{ "num_stacks": 3, "stacks": [ { "index": 1, "num_nts": 2, "nts_short": "RA", "nts_long": "///A/104,///F/2" }, { "index": 2, "num_nts": 2, "nts_short": "AU", "nts_long": "///E/2,///E/3" }, { "index": 3, "num_nts": 2, "nts_short": "AU", "nts_long": "///F/3,///F/4" } ], "num_ssSegments": 2, "ssSegments": [ { "index": 1, "num_nts": 4, "nts_short": "UAAU", "nts_long": "///E/0,///E/1,///E/2,///E/3" }, { "index": 2, "num_nts": 4, "nts_short": "UAAU", "nts_long": "///F/1,///F/2,///F/3,///F/4" } ], "dbn": { "all_chains": { "num_nts": 8, "num_chars": 9, "bseq": "UAAU&UAAU", "sstr": "....&....", "form": "...-&...-" }, "chain_E": { "num_nts": 4, "num_chars": 4, "bseq": "UAAU", "sstr": "....", "form": "...-" }, "chain_F": { "num_nts": 4, "num_chars": 4, "bseq": "UAAU", "sstr": "....", "form": "...-" } }, "chains": { "chain_E": { "num_nts": 4, "bseq": "UAAU", "sstr": "....", "form": "...-", "helical_rise": 1.535, "helical_rise_std": 0.341, "helical_axis": [ 0.147, 0.866, -0.478 ], "point1": [ 76.601, 29.525, 31.525 ], "point2": [ 77.213, 33.136, 29.530 ], "num_chars": 10, "suite": "U2[A0aA1aU" }, "chain_F": { "num_nts": 4, "bseq": "UAAU", "sstr": "....", "form": "...-", "helical_rise": 3.058, "helical_rise_std": 0.487, "helical_axis": [ -0.483, 0.846, 0.225 ], "point1": [ 81.600, -18.476, 8.951 ], "point2": [ 76.895, -10.242, 11.136 ], "num_chars": 10, "suite": "U2[A0aA1aU" } }, "num_nts": 8, "nts": [ { "index": 1, "index_chain": 1, "chain_name": "E", "nt_resnum": 0, "nt_name": "U", "nt_code": "U", "nt_id": "///E/0", "linked_nts": [ null, "///E/1" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": null, "beta": -110.504, "gamma": 69.868, "delta": 140.437, "epsilon": -96.894, "zeta": -80.051, "epsilon_zeta": -16.843, "bb_type": "--", "chi": -119.965, "glyco_bond": "anti", "C5prime_xyz": [ -2.378, 8.564, -1.362 ], "P_xyz": [ -0.468, 9.550, 0.170 ], "form": ".", "ssZp": 1.147, "Dp": 1.165, "splay_angle": 81.531, "splay_distance": 12.708, "splay_ratio": 0.654, "d22": null, "d64": null, "eta": null, "theta": -46.445, "eta_prime": null, "theta_prime": -62.911, "eta_base": null, "theta_base": -39.158, "v0": -28.488, "v1": 38.764, "v2": -33.562, "v3": 17.849, "v4": 6.498, "amplitude": 38.162, "phase_angle": 151.578, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.008, "origin": [ 82.002, 28.938, 39.371 ], "x_axis": [ -0.263, -0.717, 0.646 ], "y_axis": [ -0.867, 0.469, 0.168 ], "z_axis": [ -0.423, -0.516, -0.745 ], "quaternion": [ -0.340, -0.503, 0.787, -0.110 ] } }, { "index": 2, "index_chain": 2, "chain_name": "E", "nt_resnum": 1, "nt_name": "A", "nt_code": "A", "nt_id": "///E/1", "linked_nts": [ "///E/0", "///E/2" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": -85.876, "beta": -177.414, "gamma": 54.067, "delta": 149.470, "epsilon": -109.724, "zeta": 114.065, "epsilon_zeta": 136.211, "bb_type": "--", "chi": -137.762, "glyco_bond": "anti", "C5prime_xyz": [ -1.670, 8.711, -0.151 ], "P_xyz": [ 0.439, 9.274, 1.296 ], "form": ".", "ssZp": 0.891, "Dp": 0.961, "splay_angle": 59.845, "splay_distance": 9.536, "splay_ratio": 0.501, "d22": null, "d64": null, "eta": 149.784, "theta": 122.186, "eta_prime": -155.086, "theta_prime": 108.229, "eta_base": -131.000, "theta_base": 131.353, "v0": -19.728, "v1": 35.948, "v2": -37.543, "v3": 27.155, "v4": -4.820, "amplitude": 38.325, "phase_angle": 168.408, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.501, "filter_rmsd": 0.045, "frame": { "rmsd": 0.016, "origin": [ 69.437, 30.155, 37.908 ], "x_axis": [ 0.451, -0.144, 0.881 ], "y_axis": [ 0.767, 0.568, -0.300 ], "z_axis": [ -0.457, 0.811, 0.367 ], "quaternion": [ 0.772, -0.360, -0.433, -0.295 ] } }, { "index": 3, "index_chain": 3, "chain_name": "E", "nt_resnum": 2, "nt_name": "A", "nt_code": "A", "nt_id": "///E/2", "linked_nts": [ "///E/1", "///E/3" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -78.745, "beta": 154.708, "gamma": 44.423, "delta": 84.950, "epsilon": -152.242, "zeta": -65.014, "epsilon_zeta": -87.228, "bb_type": "BI", "chi": -159.006, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.779, 0.450 ], "P_xyz": [ 1.137, 8.925, 0.812 ], "form": ".", "ssZp": 4.207, "Dp": 4.450, "splay_angle": 13.921, "splay_distance": 2.227, "splay_ratio": 0.123, "d22": null, "d64": null, "eta": 179.856, "theta": -130.257, "eta_prime": 179.664, "theta_prime": -130.657, "eta_base": -170.152, "theta_base": -86.771, "v0": 0.161, "v1": -20.751, "v2": 32.242, "v3": -33.115, "v4": 20.695, "amplitude": 33.968, "phase_angle": 18.342, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.381, "filter_rmsd": 0.046, "frame": { "rmsd": 0.021, "origin": [ 70.399, 27.574, 28.778 ], "x_axis": [ -0.819, 0.207, 0.535 ], "y_axis": [ 0.360, 0.911, 0.199 ], "z_axis": [ -0.446, 0.356, -0.821 ], "quaternion": [ -0.260, 0.151, 0.942, 0.147 ] } }, { "index": 4, "index_chain": 4, "chain_name": "E", "nt_resnum": 3, "nt_name": "U", "nt_code": "U", "nt_id": "///E/3", "linked_nts": [ "///E/2", null ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -86.876, "beta": -166.995, "gamma": 54.757, "delta": 90.337, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -121.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.458, 8.309, -1.704 ], "P_xyz": [ 1.140, 8.551, -2.025 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 1.759, "v1": -19.899, "v2": 29.405, "v3": -29.310, "v4": 17.357, "amplitude": 30.507, "phase_angle": 15.447, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.462, "filter_rmsd": 0.109, "frame": { "rmsd": 0.011, "origin": [ 68.708, 28.733, 27.906 ], "x_axis": [ -0.317, 0.721, 0.616 ], "y_axis": [ 0.471, 0.684, -0.557 ], "z_axis": [ -0.823, 0.113, -0.557 ], "quaternion": [ -0.450, 0.373, 0.800, -0.139 ] } }, { "index": 5, "index_chain": 1, "chain_name": "F", "nt_resnum": 1, "nt_name": "U", "nt_code": "U", "nt_id": "///F/1", "linked_nts": [ null, "///F/2" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": null, "beta": 74.174, "gamma": 35.422, "delta": 135.423, "epsilon": -100.455, "zeta": -83.468, "epsilon_zeta": -16.987, "bb_type": "--", "chi": -112.168, "glyco_bond": "anti", "C5prime_xyz": [ -2.282, 8.397, -1.840 ], "P_xyz": [ 0.072, 8.109, -0.782 ], "form": ".", "ssZp": 0.847, "Dp": 0.890, "splay_angle": 77.011, "splay_distance": 12.297, "splay_ratio": 0.623, "d22": null, "d64": null, "eta": null, "theta": -44.983, "eta_prime": null, "theta_prime": -73.794, "eta_base": null, "theta_base": -48.897, "v0": -30.731, "v1": 39.073, "v2": -32.197, "v3": 15.507, "v4": 9.738, "amplitude": 38.335, "phase_angle": 147.129, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.114, "frame": { "rmsd": 0.020, "origin": [ 86.746, -11.612, 3.373 ], "x_axis": [ -0.245, 0.620, -0.745 ], "y_axis": [ -0.777, -0.586, -0.231 ], "z_axis": [ -0.580, 0.523, 0.625 ], "quaternion": [ 0.446, -0.423, 0.093, 0.784 ] } }, { "index": 6, "index_chain": 2, "chain_name": "F", "nt_resnum": 2, "nt_name": "A", "nt_code": "A", "nt_id": "///F/2", "linked_nts": [ "///F/1", "///F/3" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": -69.606, "beta": -176.166, "gamma": 39.465, "delta": 153.868, "epsilon": -116.986, "zeta": 121.051, "epsilon_zeta": 121.963, "bb_type": "--", "chi": -125.471, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.605, -0.750 ], "P_xyz": [ 0.564, 9.437, 0.621 ], "form": ".", "ssZp": 0.862, "Dp": 0.976, "splay_angle": 59.024, "splay_distance": 9.461, "splay_ratio": 0.495, "d22": null, "d64": null, "eta": 155.405, "theta": 124.459, "eta_prime": -152.020, "theta_prime": 110.563, "eta_base": -131.774, "theta_base": 134.132, "v0": -18.468, "v1": 36.058, "v2": -38.920, "v3": 29.184, "v4": -6.876, "amplitude": 39.380, "phase_angle": 171.236, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.340, "filter_rmsd": 0.060, "frame": { "rmsd": 0.032, "origin": [ 74.620, -13.560, 2.746 ], "x_axis": [ 0.582, 0.067, -0.811 ], "y_axis": [ 0.674, -0.597, 0.435 ], "z_axis": [ -0.455, -0.799, -0.393 ], "quaternion": [ 0.385, 0.802, 0.231, -0.395 ] } }, { "index": 7, "index_chain": 3, "chain_name": "F", "nt_resnum": 3, "nt_name": "A", "nt_code": "A", "nt_id": "///F/3", "linked_nts": [ "///F/2", "///F/4" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -84.482, "beta": 153.568, "gamma": 51.137, "delta": 85.555, "epsilon": -138.608, "zeta": -68.147, "epsilon_zeta": -70.461, "bb_type": "BI", "chi": -163.355, "glyco_bond": "anti", "C5prime_xyz": [ -1.826, 8.705, 0.664 ], "P_xyz": [ 0.764, 9.009, 0.909 ], "form": ".", "ssZp": 4.248, "Dp": 4.548, "splay_angle": 21.343, "splay_distance": 3.457, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": 178.778, "theta": -122.970, "eta_prime": 176.493, "theta_prime": -124.450, "eta_base": -172.909, "theta_base": -74.511, "v0": -0.139, "v1": -20.773, "v2": 32.546, "v3": -33.545, "v4": 21.100, "amplitude": 34.371, "phase_angle": 18.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.594, "filter_rmsd": 0.043, "frame": { "rmsd": 0.033, "origin": [ 73.369, -10.869, 11.730 ], "x_axis": [ -0.656, -0.220, -0.722 ], "y_axis": [ 0.431, -0.895, -0.119 ], "z_axis": [ -0.619, -0.389, 0.682 ], "quaternion": [ -0.181, -0.373, -0.141, 0.899 ] } }, { "index": 8, "index_chain": 4, "chain_name": "F", "nt_resnum": 4, "nt_name": "U", "nt_code": "U", "nt_id": "///F/4", "linked_nts": [ "///F/3", null ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -60.616, "beta": 176.295, "gamma": 40.420, "delta": 84.232, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -136.364, "glyco_bond": "anti", "C5prime_xyz": [ -1.560, 8.740, -0.876 ], "P_xyz": [ 0.995, 9.344, -1.012 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -2.293, "v1": -20.073, "v2": 33.268, "v3": -35.465, "v4": 23.663, "amplitude": 35.878, "phase_angle": 21.991, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.662, "filter_rmsd": 0.112, "frame": { "rmsd": 0.013, "origin": [ 70.440, -12.676, 11.397 ], "x_axis": [ -0.043, -0.786, -0.617 ], "y_axis": [ 0.536, -0.539, 0.650 ], "z_axis": [ -0.843, -0.302, 0.444 ], "quaternion": [ -0.464, -0.513, 0.122, 0.712 ] } } ], "num_hbonds": 310, "hbonds": [ { "index": 1, "atom1_serNum": 4, "atom2_serNum": 18, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "c. B & i. \\-1 & n. O", "atom2_id": "///B/2/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 2, "atom1_serNum": 4, "atom2_serNum": 27, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "c. B & i. \\-1 & n. O", "atom2_id": "///B/3/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3, "atom1_serNum": 5, "atom2_serNum": 2163, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///B/0/N", "atom2_id": "///A/126/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4, "atom1_serNum": 8, "atom2_serNum": 36, "donAcc_type": "standard", "distance": 3.093, "atom1_id": "///B/0/O", "atom2_id": "///B/4/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5, "atom1_serNum": 10, "atom2_serNum": 2144, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///B/1/N", "atom2_id": "///A/124/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6, "atom1_serNum": 13, "atom2_serNum": 45, "donAcc_type": "standard", "distance": 3.141, "atom1_id": "///B/1/O", "atom2_id": "///B/5/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7, "atom1_serNum": 13, "atom2_serNum": 57, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///B/1/O", "atom2_id": "///B/6/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 8, "atom1_serNum": 39, "atom2_serNum": 72, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///B/4/O", "atom2_id": "///B/8/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 9, "atom1_serNum": 48, "atom2_serNum": 81, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///B/5/O", "atom2_id": "///B/9/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 10, "atom1_serNum": 56, "atom2_serNum": 254, "donAcc_type": "acceptable", "distance": 2.652, "atom1_id": "///B/5/OH", "atom2_id": "///B/30/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 11, "atom1_serNum": 56, "atom2_serNum": 1408, "donAcc_type": "acceptable", "distance": 3.524, "atom1_id": "///B/5/OH", "atom2_id": "///A/25/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 12, "atom1_serNum": 60, "atom2_serNum": 89, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///B/6/O", "atom2_id": "///B/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 13, "atom1_serNum": 68, "atom2_serNum": 97, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///B/7/O", "atom2_id": "///B/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 14, "atom1_serNum": 75, "atom2_serNum": 102, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///B/8/O", "atom2_id": "///B/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 15, "atom1_serNum": 79, "atom2_serNum": 2056, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///B/8/OE1", "atom2_id": "///A/113/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 16, "atom1_serNum": 79, "atom2_serNum": 2057, "donAcc_type": "standard", "distance": 2.707, "atom1_id": "///B/8/OE1", "atom2_id": "///A/113/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 17, "atom1_serNum": 80, "atom2_serNum": 1384, "donAcc_type": "standard", "distance": 2.581, "atom1_id": "///B/8/OE2", "atom2_id": "///A/22/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 18, "atom1_serNum": 80, "atom2_serNum": 2056, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///B/8/OE2", "atom2_id": "///A/113/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 19, "atom1_serNum": 84, "atom2_serNum": 111, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///B/9/O", "atom2_id": "///B/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 20, "atom1_serNum": 92, "atom2_serNum": 120, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///B/10/O", "atom2_id": "///B/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 21, "atom1_serNum": 100, "atom2_serNum": 128, "donAcc_type": "standard", "distance": 3.186, "atom1_id": "///B/11/O", "atom2_id": "///B/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 22, "atom1_serNum": 105, "atom2_serNum": 134, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///B/12/O", "atom2_id": "///B/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 23, "atom1_serNum": 109, "atom2_serNum": 1385, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///B/12/OE1", "atom2_id": "///A/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 24, "atom1_serNum": 110, "atom2_serNum": 1375, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///B/12/OE2", "atom2_id": "///A/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 25, "atom1_serNum": 119, "atom2_serNum": 126, "donAcc_type": "standard", "distance": 3.571, "atom1_id": "///B/13/NZ", "atom2_id": "///B/14/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 26, "atom1_serNum": 145, "atom2_serNum": 163, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///B/17/O", "atom2_id": "///B/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 27, "atom1_serNum": 148, "atom2_serNum": 162, "donAcc_type": "acceptable", "distance": 2.810, "atom1_id": "///B/17/OD1", "atom2_id": "///B/19/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 28, "atom1_serNum": 149, "atom2_serNum": 157, "donAcc_type": "standard", "distance": 2.567, "atom1_id": "///B/17/OD2", "atom2_id": "///B/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 29, "atom1_serNum": 149, "atom2_serNum": 162, "donAcc_type": "acceptable", "distance": 2.643, "atom1_id": "///B/17/OD2", "atom2_id": "///B/19/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 30, "atom1_serNum": 160, "atom2_serNum": 174, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///B/19/O", "atom2_id": "///B/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 31, "atom1_serNum": 166, "atom2_serNum": 196, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///B/20/O", "atom2_id": "///B/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 32, "atom1_serNum": 177, "atom2_serNum": 204, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///B/21/O", "atom2_id": "///B/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 33, "atom1_serNum": 181, "atom2_serNum": 1304, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///B/22/N", "atom2_id": "///A/12/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 34, "atom1_serNum": 184, "atom2_serNum": 215, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///B/22/O", "atom2_id": "///B/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 35, "atom1_serNum": 187, "atom2_serNum": 214, "donAcc_type": "acceptable", "distance": 2.910, "atom1_id": "///B/22/ND1", "atom2_id": "///B/25/NH2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 36, "atom1_serNum": 190, "atom2_serNum": 1274, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///B/22/NE2", "atom2_id": "///A/8/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 37, "atom1_serNum": 191, "atom2_serNum": 1303, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///B/23/N", "atom2_id": "///A/12/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 38, "atom1_serNum": 194, "atom2_serNum": 223, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///B/23/O", "atom2_id": "///B/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 39, "atom1_serNum": 199, "atom2_serNum": 230, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///B/24/O", "atom2_id": "///B/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 40, "atom1_serNum": 207, "atom2_serNum": 238, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///B/25/O", "atom2_id": "///B/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 41, "atom1_serNum": 214, "atom2_serNum": 1250, "donAcc_type": "acceptable", "distance": 2.571, "atom1_id": "///B/25/NH2", "atom2_id": "///A/5/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 42, "atom1_serNum": 218, "atom2_serNum": 247, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///B/26/O", "atom2_id": "///B/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 43, "atom1_serNum": 226, "atom2_serNum": 256, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///B/27/O", "atom2_id": "///B/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 44, "atom1_serNum": 233, "atom2_serNum": 264, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///B/28/O", "atom2_id": "///B/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 45, "atom1_serNum": 241, "atom2_serNum": 273, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///B/29/O", "atom2_id": "///B/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 46, "atom1_serNum": 250, "atom2_serNum": 282, "donAcc_type": "standard", "distance": 3.238, "atom1_id": "///B/30/O", "atom2_id": "///B/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 47, "atom1_serNum": 254, "atom2_serNum": 1408, "donAcc_type": "standard", "distance": 3.091, "atom1_id": "///B/30/OE1", "atom2_id": "///A/25/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 48, "atom1_serNum": 259, "atom2_serNum": 293, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///B/31/O", "atom2_id": "///B/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 49, "atom1_serNum": 267, "atom2_serNum": 302, "donAcc_type": "standard", "distance": 3.339, "atom1_id": "///B/32/O", "atom2_id": "///B/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 50, "atom1_serNum": 276, "atom2_serNum": 302, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///B/33/O", "atom2_id": "///B/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 51, "atom1_serNum": 319, "atom2_serNum": 329, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///B/43/OE2", "atom2_id": "///B/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 52, "atom1_serNum": 323, "atom2_serNum": 1608, "donAcc_type": "standard", "distance": 2.792, "atom1_id": "///B/44/O", "atom2_id": "///A/58/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 53, "atom1_serNum": 340, "atom2_serNum": 2155, "donAcc_type": "acceptable", "distance": 2.986, "atom1_id": "///B/45/OH", "atom2_id": "///A/125/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 54, "atom1_serNum": 340, "atom2_serNum": 2156, "donAcc_type": "acceptable", "distance": 2.493, "atom1_id": "///B/45/OH", "atom2_id": "///A/125/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 55, "atom1_serNum": 341, "atom2_serNum": 1612, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///B/46/N", "atom2_id": "///A/59/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 56, "atom1_serNum": 344, "atom2_serNum": 1625, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///B/46/O", "atom2_id": "///A/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 57, "atom1_serNum": 352, "atom2_serNum": 379, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///B/47/O", "atom2_id": "///B/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 58, "atom1_serNum": 355, "atom2_serNum": 364, "donAcc_type": "standard", "distance": 3.280, "atom1_id": "///B/47/OD1", "atom2_id": "///B/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 59, "atom1_serNum": 404, "atom2_serNum": 1060, "donAcc_type": "standard", "distance": 2.803, "atom1_id": "///B/54/N", "atom2_id": "///B/135/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 60, "atom1_serNum": 407, "atom2_serNum": 1057, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///B/54/O", "atom2_id": "///B/135/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 61, "atom1_serNum": 421, "atom2_serNum": 1042, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///B/56/N", "atom2_id": "///B/133/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 62, "atom1_serNum": 424, "atom2_serNum": 1039, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///B/56/O", "atom2_id": "///B/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 63, "atom1_serNum": 433, "atom2_serNum": 1025, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///B/58/N", "atom2_id": "///B/131/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 64, "atom1_serNum": 436, "atom2_serNum": 1022, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///B/58/O", "atom2_id": "///B/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 65, "atom1_serNum": 440, "atom2_serNum": 2282, "donAcc_type": "acceptable", "distance": 2.605, "atom1_id": "///B/58/OE1", "atom2_id": "///A/141/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 66, "atom1_serNum": 441, "atom2_serNum": 445, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///B/58/NE2", "atom2_id": "///B/59/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 67, "atom1_serNum": 445, "atom2_serNum": 1508, "donAcc_type": "standard", "distance": 3.112, "atom1_id": "///B/59/O", "atom2_id": "///A/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 68, "atom1_serNum": 451, "atom2_serNum": 1010, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///B/60/N", "atom2_id": "///B/129/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 69, "atom1_serNum": 454, "atom2_serNum": 1007, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///B/60/O", "atom2_id": "///B/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 70, "atom1_serNum": 458, "atom2_serNum": 1511, "donAcc_type": "standard", "distance": 2.630, "atom1_id": "///B/61/N", "atom2_id": "///A/46/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 71, "atom1_serNum": 466, "atom2_serNum": 992, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///B/62/N", "atom2_id": "///B/127/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 72, "atom1_serNum": 469, "atom2_serNum": 481, "donAcc_type": "standard", "distance": 2.632, "atom1_id": "///B/62/O", "atom2_id": "///B/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 73, "atom1_serNum": 477, "atom2_serNum": 506, "donAcc_type": "standard", "distance": 3.149, "atom1_id": "///B/63/O", "atom2_id": "///B/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 74, "atom1_serNum": 536, "atom2_serNum": 552, "donAcc_type": "standard", "distance": 3.193, "atom1_id": "///B/70/O", "atom2_id": "///B/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 75, "atom1_serNum": 547, "atom2_serNum": 574, "donAcc_type": "standard", "distance": 3.162, "atom1_id": "///B/71/O", "atom2_id": "///B/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 76, "atom1_serNum": 550, "atom2_serNum": 570, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///B/71/OD1", "atom2_id": "///B/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 77, "atom1_serNum": 551, "atom2_serNum": 2423, "donAcc_type": "standard", "distance": 3.130, "atom1_id": "///B/71/ND2", "atom2_id": "///E/0/OP2", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 78, "atom1_serNum": 555, "atom2_serNum": 583, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///B/72/O", "atom2_id": "///B/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 79, "atom1_serNum": 566, "atom2_serNum": 591, "donAcc_type": "standard", "distance": 3.103, "atom1_id": "///B/73/O", "atom2_id": "///B/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 80, "atom1_serNum": 573, "atom2_serNum": 599, "donAcc_type": "standard", "distance": 3.112, "atom1_id": "///B/74/O", "atom2_id": "///B/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 81, "atom1_serNum": 577, "atom2_serNum": 638, "donAcc_type": "acceptable", "distance": 3.457, "atom1_id": "///B/75/O", "atom2_id": "///B/83/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 82, "atom1_serNum": 582, "atom2_serNum": 1196, "donAcc_type": "standard", "distance": 3.510, "atom1_id": "///B/75/NZ", "atom2_id": "///B/153/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 83, "atom1_serNum": 586, "atom2_serNum": 639, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///B/76/O", "atom2_id": "///B/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 84, "atom1_serNum": 594, "atom2_serNum": 625, "donAcc_type": "standard", "distance": 3.237, "atom1_id": "///B/77/O", "atom2_id": "///B/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 85, "atom1_serNum": 594, "atom2_serNum": 633, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///B/77/O", "atom2_id": "///B/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 86, "atom1_serNum": 594, "atom2_serNum": 639, "donAcc_type": "standard", "distance": 3.334, "atom1_id": "///B/77/O", "atom2_id": "///B/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 87, "atom1_serNum": 602, "atom2_serNum": 621, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///B/78/O", "atom2_id": "///B/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 88, "atom1_serNum": 606, "atom2_serNum": 625, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///B/79/O", "atom2_id": "///B/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 89, "atom1_serNum": 610, "atom2_serNum": 2442, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///B/80/N", "atom2_id": "///E/1/OP1", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 90, "atom1_serNum": 613, "atom2_serNum": 655, "donAcc_type": "standard", "distance": 3.390, "atom1_id": "///B/80/O", "atom2_id": "///B/85/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 91, "atom1_serNum": 617, "atom2_serNum": 631, "donAcc_type": "standard", "distance": 3.242, "atom1_id": "///B/80/NE", "atom2_id": "///B/82/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 92, "atom1_serNum": 624, "atom2_serNum": 647, "donAcc_type": "standard", "distance": 3.258, "atom1_id": "///B/81/O", "atom2_id": "///B/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 93, "atom1_serNum": 628, "atom2_serNum": 656, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///B/82/O", "atom2_id": "///B/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 94, "atom1_serNum": 636, "atom2_serNum": 667, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///B/83/O", "atom2_id": "///B/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 95, "atom1_serNum": 642, "atom2_serNum": 675, "donAcc_type": "standard", "distance": 2.970, "atom1_id": "///B/84/O", "atom2_id": "///B/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 96, "atom1_serNum": 642, "atom2_serNum": 683, "donAcc_type": "standard", "distance": 3.309, "atom1_id": "///B/84/O", "atom2_id": "///B/88/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 97, "atom1_serNum": 650, "atom2_serNum": 684, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///B/85/O", "atom2_id": "///B/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 98, "atom1_serNum": 655, "atom2_serNum": 2471, "donAcc_type": "standard", "distance": 3.012, "atom1_id": "///B/85/NZ", "atom2_id": "///E/2/O3'", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 99, "atom1_serNum": 655, "atom2_serNum": 2473, "donAcc_type": "acceptable", "distance": 2.641, "atom1_id": "///B/85/NZ", "atom2_id": "///E/2/O2'", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 100, "atom1_serNum": 659, "atom2_serNum": 693, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///B/86/O", "atom2_id": "///B/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 101, "atom1_serNum": 665, "atom2_serNum": 692, "donAcc_type": "standard", "distance": 3.989, "atom1_id": "///B/86/NH1", "atom2_id": "///B/89/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 102, "atom1_serNum": 670, "atom2_serNum": 702, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///B/87/O", "atom2_id": "///B/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 103, "atom1_serNum": 670, "atom2_serNum": 707, "donAcc_type": "acceptable", "distance": 2.565, "atom1_id": "///B/87/O", "atom2_id": "///B/91/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 104, "atom1_serNum": 678, "atom2_serNum": 707, "donAcc_type": "acceptable", "distance": 3.191, "atom1_id": "///B/88/O", "atom2_id": "///B/91/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 105, "atom1_serNum": 678, "atom2_serNum": 709, "donAcc_type": "standard", "distance": 2.623, "atom1_id": "///B/88/O", "atom2_id": "///B/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 106, "atom1_serNum": 678, "atom2_serNum": 717, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///B/88/O", "atom2_id": "///B/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 107, "atom1_serNum": 682, "atom2_serNum": 733, "donAcc_type": "standard", "distance": 3.045, "atom1_id": "///B/88/OE1", "atom2_id": "///B/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 108, "atom1_serNum": 700, "atom2_serNum": 1174, "donAcc_type": "questionable", "distance": 2.895, "atom1_id": "///B/90/OE1", "atom2_id": "///B/150/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 109, "atom1_serNum": 701, "atom2_serNum": 1144, "donAcc_type": "standard", "distance": 2.585, "atom1_id": "///B/90/OE2", "atom2_id": "///B/146/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 110, "atom1_serNum": 707, "atom2_serNum": 722, "donAcc_type": "acceptable", "distance": 2.993, "atom1_id": "///B/91/OG1", "atom2_id": "///B/93/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 111, "atom1_serNum": 712, "atom2_serNum": 1121, "donAcc_type": "standard", "distance": 3.937, "atom1_id": "///B/92/O", "atom2_id": "///B/143/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 112, "atom1_serNum": 724, "atom2_serNum": 1033, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///B/94/N", "atom2_id": "///B/132/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 113, "atom1_serNum": 727, "atom2_serNum": 1030, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///B/94/O", "atom2_id": "///B/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 114, "atom1_serNum": 732, "atom2_serNum": 746, "donAcc_type": "acceptable", "distance": 2.946, "atom1_id": "///B/94/NZ", "atom2_id": "///B/96/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 115, "atom1_serNum": 741, "atom2_serNum": 1017, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///B/96/N", "atom2_id": "///B/130/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 116, "atom1_serNum": 744, "atom2_serNum": 1014, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///B/96/O", "atom2_id": "///B/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 117, "atom1_serNum": 746, "atom2_serNum": 2499, "donAcc_type": "acceptable", "distance": 3.796, "atom1_id": "///B/96/OG", "atom2_id": "///E/3/O2", "atom_pair": "O:O", "residue_pair": "aa:nt" }, { "index": 118, "atom1_serNum": 747, "atom2_serNum": 2481, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///B/97/N", "atom2_id": "///E/2/N1", "atom_pair": "N:N", "residue_pair": "aa:nt" }, { "index": 119, "atom1_serNum": 750, "atom2_serNum": 2480, "donAcc_type": "standard", "distance": 3.056, "atom1_id": "///B/97/O", "atom2_id": "///E/2/N6", "atom_pair": "O:N", "residue_pair": "aa:nt" }, { "index": 120, "atom1_serNum": 755, "atom2_serNum": 1000, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///B/98/N", "atom2_id": "///B/128/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 121, "atom1_serNum": 758, "atom2_serNum": 997, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///B/98/O", "atom2_id": "///B/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 122, "atom1_serNum": 763, "atom2_serNum": 950, "donAcc_type": "standard", "distance": 3.160, "atom1_id": "///B/99/N", "atom2_id": "///B/122/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 123, "atom1_serNum": 766, "atom2_serNum": 785, "donAcc_type": "acceptable", "distance": 2.266, "atom1_id": "///B/99/O", "atom2_id": "///B/102/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 124, "atom1_serNum": 767, "atom2_serNum": 976, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///B/100/N", "atom2_id": "///B/125/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 125, "atom1_serNum": 775, "atom2_serNum": 950, "donAcc_type": "standard", "distance": 3.090, "atom1_id": "///B/100/NZ", "atom2_id": "///B/122/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 126, "atom1_serNum": 775, "atom2_serNum": 976, "donAcc_type": "standard", "distance": 2.187, "atom1_id": "///B/100/NZ", "atom2_id": "///B/125/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 127, "atom1_serNum": 776, "atom2_serNum": 844, "donAcc_type": "standard", "distance": 3.312, "atom1_id": "///B/101/N", "atom2_id": "///B/109/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 128, "atom1_serNum": 780, "atom2_serNum": 844, "donAcc_type": "standard", "distance": 3.098, "atom1_id": "///B/102/N", "atom2_id": "///B/109/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 129, "atom1_serNum": 786, "atom2_serNum": 844, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///B/103/N", "atom2_id": "///B/109/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 130, "atom1_serNum": 789, "atom2_serNum": 821, "donAcc_type": "standard", "distance": 2.637, "atom1_id": "///B/103/O", "atom2_id": "///B/106/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 131, "atom1_serNum": 804, "atom2_serNum": 2443, "donAcc_type": "standard", "distance": 3.271, "atom1_id": "///B/104/NH2", "atom2_id": "///E/1/OP2", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 132, "atom1_serNum": 808, "atom2_serNum": 836, "donAcc_type": "standard", "distance": 3.554, "atom1_id": "///B/105/O", "atom2_id": "///B/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 133, "atom1_serNum": 812, "atom2_serNum": 827, "donAcc_type": "standard", "distance": 3.190, "atom1_id": "///B/105/OD2", "atom2_id": "///B/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 134, "atom1_serNum": 821, "atom2_serNum": 843, "donAcc_type": "standard", "distance": 3.597, "atom1_id": "///B/106/NZ", "atom2_id": "///B/109/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 135, "atom1_serNum": 825, "atom2_serNum": 845, "donAcc_type": "standard", "distance": 3.441, "atom1_id": "///B/107/O", "atom2_id": "///B/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 136, "atom1_serNum": 830, "atom2_serNum": 854, "donAcc_type": "standard", "distance": 2.478, "atom1_id": "///B/108/O", "atom2_id": "///B/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 137, "atom1_serNum": 830, "atom2_serNum": 863, "donAcc_type": "standard", "distance": 3.405, "atom1_id": "///B/108/O", "atom2_id": "///B/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 138, "atom1_serNum": 835, "atom2_serNum": 861, "donAcc_type": "standard", "distance": 2.962, "atom1_id": "///B/108/NZ", "atom2_id": "///B/111/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 139, "atom1_serNum": 835, "atom2_serNum": 862, "donAcc_type": "standard", "distance": 2.450, "atom1_id": "///B/108/NZ", "atom2_id": "///B/111/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 140, "atom1_serNum": 839, "atom2_serNum": 880, "donAcc_type": "standard", "distance": 3.917, "atom1_id": "///B/109/O", "atom2_id": "///B/113/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 141, "atom1_serNum": 848, "atom2_serNum": 880, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///B/110/O", "atom2_id": "///B/113/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 142, "atom1_serNum": 857, "atom2_serNum": 882, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///B/111/O", "atom2_id": "///B/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 143, "atom1_serNum": 857, "atom2_serNum": 885, "donAcc_type": "questionable", "distance": 2.992, "atom1_id": "///B/111/O", "atom2_id": "///B/114/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 144, "atom1_serNum": 874, "atom2_serNum": 909, "donAcc_type": "questionable", "distance": 3.031, "atom1_id": "///B/113/O", "atom2_id": "///B/117/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 145, "atom1_serNum": 878, "atom2_serNum": 960, "donAcc_type": "standard", "distance": 2.499, "atom1_id": "///B/113/NE", "atom2_id": "///B/123/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 146, "atom1_serNum": 878, "atom2_serNum": 971, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///B/113/NE", "atom2_id": "///B/124/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 147, "atom1_serNum": 885, "atom2_serNum": 897, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///B/114/O", "atom2_id": "///B/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 148, "atom1_serNum": 927, "atom2_serNum": 957, "donAcc_type": "standard", "distance": 3.390, "atom1_id": "///B/120/O", "atom2_id": "///B/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 149, "atom1_serNum": 939, "atom2_serNum": 972, "donAcc_type": "standard", "distance": 3.095, "atom1_id": "///B/121/O", "atom2_id": "///B/124/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 150, "atom1_serNum": 939, "atom2_serNum": 979, "donAcc_type": "questionable", "distance": 2.710, "atom1_id": "///B/121/O", "atom2_id": "///B/125/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 151, "atom1_serNum": 965, "atom2_serNum": 979, "donAcc_type": "standard", "distance": 3.121, "atom1_id": "///B/124/N", "atom2_id": "///B/125/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 152, "atom1_serNum": 973, "atom2_serNum": 979, "donAcc_type": "standard", "distance": 2.315, "atom1_id": "///B/125/N", "atom2_id": "///B/125/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 153, "atom1_serNum": 980, "atom2_serNum": 1507, "donAcc_type": "acceptable", "distance": 3.311, "atom1_id": "///B/125/OD2", "atom2_id": "///A/45/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 154, "atom1_serNum": 981, "atom2_serNum": 988, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///B/126/N", "atom2_id": "///B/126/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 155, "atom1_serNum": 984, "atom2_serNum": 1003, "donAcc_type": "acceptable", "distance": 2.716, "atom1_id": "///B/126/O", "atom2_id": "///B/128/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 156, "atom1_serNum": 1065, "atom2_serNum": 1090, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///B/136/O", "atom2_id": "///B/140/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 157, "atom1_serNum": 1072, "atom2_serNum": 1095, "donAcc_type": "standard", "distance": 3.085, "atom1_id": "///B/137/O", "atom2_id": "///B/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 158, "atom1_serNum": 1079, "atom2_serNum": 1107, "donAcc_type": "standard", "distance": 3.023, "atom1_id": "///B/138/O", "atom2_id": "///B/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 159, "atom1_serNum": 1084, "atom2_serNum": 1112, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///B/139/O", "atom2_id": "///B/143/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 160, "atom1_serNum": 1093, "atom2_serNum": 1123, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///B/140/O", "atom2_id": "///B/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 161, "atom1_serNum": 1098, "atom2_serNum": 1131, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///B/141/O", "atom2_id": "///B/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 162, "atom1_serNum": 1106, "atom2_serNum": 1607, "donAcc_type": "acceptable", "distance": 2.607, "atom1_id": "///B/141/OH", "atom2_id": "///A/58/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 163, "atom1_serNum": 1110, "atom2_serNum": 1135, "donAcc_type": "standard", "distance": 3.056, "atom1_id": "///B/142/O", "atom2_id": "///B/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 164, "atom1_serNum": 1115, "atom2_serNum": 1145, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///B/143/O", "atom2_id": "///B/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 165, "atom1_serNum": 1126, "atom2_serNum": 1150, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///B/144/O", "atom2_id": "///B/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 166, "atom1_serNum": 1134, "atom2_serNum": 1158, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///B/145/O", "atom2_id": "///B/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 167, "atom1_serNum": 1138, "atom2_serNum": 1167, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///B/146/O", "atom2_id": "///B/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 168, "atom1_serNum": 1148, "atom2_serNum": 1176, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///B/147/O", "atom2_id": "///B/151/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 169, "atom1_serNum": 1161, "atom2_serNum": 1184, "donAcc_type": "standard", "distance": 3.211, "atom1_id": "///B/149/O", "atom2_id": "///B/152/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 170, "atom1_serNum": 1165, "atom2_serNum": 2265, "donAcc_type": "questionable", "distance": 3.189, "atom1_id": "///B/149/OE1", "atom2_id": "///A/139/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 171, "atom1_serNum": 1166, "atom2_serNum": 1192, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///B/149/OE2", "atom2_id": "///B/152/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 172, "atom1_serNum": 1175, "atom2_serNum": 1201, "donAcc_type": "standard", "distance": 2.535, "atom1_id": "///B/150/OE2", "atom2_id": "///B/153/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 173, "atom1_serNum": 1179, "atom2_serNum": 1202, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///B/151/O", "atom2_id": "///B/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 174, "atom1_serNum": 1187, "atom2_serNum": 1213, "donAcc_type": "standard", "distance": 2.817, "atom1_id": "///B/152/O", "atom2_id": "///B/155/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 175, "atom1_serNum": 1233, "atom2_serNum": 1266, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///A/4/O", "atom2_id": "///A/8/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 176, "atom1_serNum": 1242, "atom2_serNum": 1275, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///A/5/O", "atom2_id": "///A/9/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 177, "atom1_serNum": 1250, "atom2_serNum": 1449, "donAcc_type": "acceptable", "distance": 3.350, "atom1_id": "///A/5/OH", "atom2_id": "///A/30/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 178, "atom1_serNum": 1254, "atom2_serNum": 1283, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///A/6/O", "atom2_id": "///A/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 179, "atom1_serNum": 1262, "atom2_serNum": 1291, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///A/7/O", "atom2_id": "///A/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 180, "atom1_serNum": 1269, "atom2_serNum": 1296, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///A/8/O", "atom2_id": "///A/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 181, "atom1_serNum": 1278, "atom2_serNum": 1305, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/9/O", "atom2_id": "///A/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 182, "atom1_serNum": 1286, "atom2_serNum": 1314, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///A/10/O", "atom2_id": "///A/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 183, "atom1_serNum": 1294, "atom2_serNum": 1322, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/11/O", "atom2_id": "///A/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 184, "atom1_serNum": 1294, "atom2_serNum": 1327, "donAcc_type": "acceptable", "distance": 2.653, "atom1_id": "///A/11/O", "atom2_id": "///A/15/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 185, "atom1_serNum": 1299, "atom2_serNum": 1328, "donAcc_type": "standard", "distance": 2.743, "atom1_id": "///A/12/O", "atom2_id": "///A/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 186, "atom1_serNum": 1313, "atom2_serNum": 1430, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///A/13/NZ", "atom2_id": "///A/28/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 187, "atom1_serNum": 1339, "atom2_serNum": 1357, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///A/17/O", "atom2_id": "///A/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 188, "atom1_serNum": 1343, "atom2_serNum": 1356, "donAcc_type": "acceptable", "distance": 2.140, "atom1_id": "///A/17/OD2", "atom2_id": "///A/19/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 189, "atom1_serNum": 1360, "atom2_serNum": 1390, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/20/O", "atom2_id": "///A/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 190, "atom1_serNum": 1371, "atom2_serNum": 1398, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///A/21/O", "atom2_id": "///A/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 191, "atom1_serNum": 1378, "atom2_serNum": 1409, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/22/O", "atom2_id": "///A/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 192, "atom1_serNum": 1388, "atom2_serNum": 1417, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///A/23/O", "atom2_id": "///A/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 193, "atom1_serNum": 1393, "atom2_serNum": 1424, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/24/O", "atom2_id": "///A/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 194, "atom1_serNum": 1401, "atom2_serNum": 1432, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/25/O", "atom2_id": "///A/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 195, "atom1_serNum": 1407, "atom2_serNum": 1439, "donAcc_type": "standard", "distance": 2.693, "atom1_id": "///A/25/NH1", "atom2_id": "///A/29/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 196, "atom1_serNum": 1412, "atom2_serNum": 1441, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///A/26/O", "atom2_id": "///A/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 197, "atom1_serNum": 1420, "atom2_serNum": 1450, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/27/O", "atom2_id": "///A/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 198, "atom1_serNum": 1427, "atom2_serNum": 1458, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///A/28/O", "atom2_id": "///A/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 199, "atom1_serNum": 1435, "atom2_serNum": 1467, "donAcc_type": "standard", "distance": 3.331, "atom1_id": "///A/29/O", "atom2_id": "///A/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 200, "atom1_serNum": 1453, "atom2_serNum": 1476, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///A/31/O", "atom2_id": "///A/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 201, "atom1_serNum": 1519, "atom2_serNum": 1546, "donAcc_type": "standard", "distance": 3.308, "atom1_id": "///A/47/O", "atom2_id": "///A/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 202, "atom1_serNum": 1519, "atom2_serNum": 1562, "donAcc_type": "standard", "distance": 2.116, "atom1_id": "///A/47/O", "atom2_id": "///A/52/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 203, "atom1_serNum": 1522, "atom2_serNum": 1531, "donAcc_type": "standard", "distance": 3.301, "atom1_id": "///A/47/OD1", "atom2_id": "///A/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 204, "atom1_serNum": 1571, "atom2_serNum": 2236, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///A/54/N", "atom2_id": "///A/135/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 205, "atom1_serNum": 1574, "atom2_serNum": 2233, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///A/54/O", "atom2_id": "///A/135/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 206, "atom1_serNum": 1588, "atom2_serNum": 2218, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///A/56/N", "atom2_id": "///A/133/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 207, "atom1_serNum": 1591, "atom2_serNum": 2215, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///A/56/O", "atom2_id": "///A/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 208, "atom1_serNum": 1600, "atom2_serNum": 2201, "donAcc_type": "standard", "distance": 2.830, "atom1_id": "///A/58/N", "atom2_id": "///A/131/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 209, "atom1_serNum": 1603, "atom2_serNum": 2198, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///A/58/O", "atom2_id": "///A/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 210, "atom1_serNum": 1608, "atom2_serNum": 1612, "donAcc_type": "standard", "distance": 3.286, "atom1_id": "///A/58/NE2", "atom2_id": "///A/59/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 211, "atom1_serNum": 1618, "atom2_serNum": 2186, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///A/60/N", "atom2_id": "///A/129/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 212, "atom1_serNum": 1621, "atom2_serNum": 2183, "donAcc_type": "standard", "distance": 2.835, "atom1_id": "///A/60/O", "atom2_id": "///A/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 213, "atom1_serNum": 1633, "atom2_serNum": 2168, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///A/62/N", "atom2_id": "///A/127/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 214, "atom1_serNum": 1636, "atom2_serNum": 1648, "donAcc_type": "standard", "distance": 2.657, "atom1_id": "///A/62/O", "atom2_id": "///A/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 215, "atom1_serNum": 1644, "atom2_serNum": 1673, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///A/63/O", "atom2_id": "///A/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 216, "atom1_serNum": 1703, "atom2_serNum": 1719, "donAcc_type": "standard", "distance": 3.078, "atom1_id": "///A/70/O", "atom2_id": "///A/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 217, "atom1_serNum": 1714, "atom2_serNum": 1741, "donAcc_type": "standard", "distance": 3.096, "atom1_id": "///A/71/O", "atom2_id": "///A/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 218, "atom1_serNum": 1717, "atom2_serNum": 1737, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/71/OD1", "atom2_id": "///A/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 219, "atom1_serNum": 1718, "atom2_serNum": 2507, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///A/71/ND2", "atom2_id": "///F/1/OP1", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 220, "atom1_serNum": 1722, "atom2_serNum": 1750, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///A/72/O", "atom2_id": "///A/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 221, "atom1_serNum": 1733, "atom2_serNum": 1758, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/73/O", "atom2_id": "///A/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 222, "atom1_serNum": 1740, "atom2_serNum": 1766, "donAcc_type": "standard", "distance": 3.117, "atom1_id": "///A/74/O", "atom2_id": "///A/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 223, "atom1_serNum": 1749, "atom2_serNum": 2372, "donAcc_type": "standard", "distance": 3.403, "atom1_id": "///A/75/NZ", "atom2_id": "///A/153/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 224, "atom1_serNum": 1753, "atom2_serNum": 1806, "donAcc_type": "standard", "distance": 3.280, "atom1_id": "///A/76/O", "atom2_id": "///A/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 225, "atom1_serNum": 1761, "atom2_serNum": 1800, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/77/O", "atom2_id": "///A/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 226, "atom1_serNum": 1761, "atom2_serNum": 1806, "donAcc_type": "standard", "distance": 3.121, "atom1_id": "///A/77/O", "atom2_id": "///A/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 227, "atom1_serNum": 1769, "atom2_serNum": 1788, "donAcc_type": "standard", "distance": 3.208, "atom1_id": "///A/78/O", "atom2_id": "///A/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 228, "atom1_serNum": 1769, "atom2_serNum": 2516, "donAcc_type": "acceptable", "distance": 2.791, "atom1_id": "///A/78/O", "atom2_id": "///F/1/O2'", "atom_pair": "O:O", "residue_pair": "aa:nt" }, { "index": 229, "atom1_serNum": 1773, "atom2_serNum": 1792, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///A/79/O", "atom2_id": "///A/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 230, "atom1_serNum": 1777, "atom2_serNum": 2527, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///A/80/N", "atom2_id": "///F/2/OP1", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 231, "atom1_serNum": 1791, "atom2_serNum": 1814, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///A/81/O", "atom2_id": "///A/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 232, "atom1_serNum": 1795, "atom2_serNum": 1823, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/82/O", "atom2_id": "///A/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 233, "atom1_serNum": 1803, "atom2_serNum": 1834, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/83/O", "atom2_id": "///A/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 234, "atom1_serNum": 1809, "atom2_serNum": 1842, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///A/84/O", "atom2_id": "///A/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 235, "atom1_serNum": 1817, "atom2_serNum": 1851, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/85/O", "atom2_id": "///A/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 236, "atom1_serNum": 1826, "atom2_serNum": 1860, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/86/O", "atom2_id": "///A/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 237, "atom1_serNum": 1837, "atom2_serNum": 1869, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/87/O", "atom2_id": "///A/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 238, "atom1_serNum": 1837, "atom2_serNum": 1874, "donAcc_type": "acceptable", "distance": 2.553, "atom1_id": "///A/87/O", "atom2_id": "///A/91/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 239, "atom1_serNum": 1845, "atom2_serNum": 1876, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/88/O", "atom2_id": "///A/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 240, "atom1_serNum": 1845, "atom2_serNum": 1884, "donAcc_type": "standard", "distance": 3.272, "atom1_id": "///A/88/O", "atom2_id": "///A/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 241, "atom1_serNum": 1850, "atom2_serNum": 1900, "donAcc_type": "questionable", "distance": 2.806, "atom1_id": "///A/88/NE2", "atom2_id": "///A/95/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 242, "atom1_serNum": 1874, "atom2_serNum": 1889, "donAcc_type": "acceptable", "distance": 2.789, "atom1_id": "///A/91/OG1", "atom2_id": "///A/93/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 243, "atom1_serNum": 1879, "atom2_serNum": 2297, "donAcc_type": "standard", "distance": 3.609, "atom1_id": "///A/92/O", "atom2_id": "///A/143/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 244, "atom1_serNum": 1891, "atom2_serNum": 2209, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///A/94/N", "atom2_id": "///A/132/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 245, "atom1_serNum": 1894, "atom2_serNum": 2206, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///A/94/O", "atom2_id": "///A/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 246, "atom1_serNum": 1899, "atom2_serNum": 1913, "donAcc_type": "acceptable", "distance": 3.436, "atom1_id": "///A/94/NZ", "atom2_id": "///A/96/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 247, "atom1_serNum": 1899, "atom2_serNum": 2580, "donAcc_type": "acceptable", "distance": 3.462, "atom1_id": "///A/94/NZ", "atom2_id": "///F/4/O2'", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 248, "atom1_serNum": 1908, "atom2_serNum": 2193, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///A/96/N", "atom2_id": "///A/130/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 249, "atom1_serNum": 1911, "atom2_serNum": 2190, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///A/96/O", "atom2_id": "///A/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 250, "atom1_serNum": 1914, "atom2_serNum": 2566, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///A/97/N", "atom2_id": "///F/3/N1", "atom_pair": "N:N", "residue_pair": "aa:nt" }, { "index": 251, "atom1_serNum": 1917, "atom2_serNum": 2565, "donAcc_type": "standard", "distance": 2.803, "atom1_id": "///A/97/O", "atom2_id": "///F/3/N6", "atom_pair": "O:N", "residue_pair": "aa:nt" }, { "index": 252, "atom1_serNum": 1922, "atom2_serNum": 2176, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///A/98/N", "atom2_id": "///A/128/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 253, "atom1_serNum": 1925, "atom2_serNum": 2173, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///A/98/O", "atom2_id": "///A/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 254, "atom1_serNum": 1930, "atom2_serNum": 2129, "donAcc_type": "acceptable", "distance": 3.015, "atom1_id": "///A/99/N", "atom2_id": "///A/122/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 255, "atom1_serNum": 1933, "atom2_serNum": 1947, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///A/99/O", "atom2_id": "///A/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 256, "atom1_serNum": 1933, "atom2_serNum": 1952, "donAcc_type": "acceptable", "distance": 2.640, "atom1_id": "///A/99/O", "atom2_id": "///A/102/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 257, "atom1_serNum": 1934, "atom2_serNum": 2152, "donAcc_type": "standard", "distance": 2.605, "atom1_id": "///A/100/N", "atom2_id": "///A/125/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 258, "atom1_serNum": 1943, "atom2_serNum": 2019, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///A/101/N", "atom2_id": "///A/109/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 259, "atom1_serNum": 1953, "atom2_serNum": 2020, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/103/N", "atom2_id": "///A/109/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 260, "atom1_serNum": 1970, "atom2_serNum": 2528, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///A/104/NH1", "atom2_id": "///F/2/OP2", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 261, "atom1_serNum": 1971, "atom2_serNum": 2509, "donAcc_type": "standard", "distance": 2.505, "atom1_id": "///A/104/NH2", "atom2_id": "///F/1/O5'", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 262, "atom1_serNum": 1975, "atom2_serNum": 2012, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/105/O", "atom2_id": "///A/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 263, "atom1_serNum": 1978, "atom2_serNum": 1989, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///A/105/OD1", "atom2_id": "///A/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 264, "atom1_serNum": 1978, "atom2_serNum": 1994, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/105/OD1", "atom2_id": "///A/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 265, "atom1_serNum": 1983, "atom2_serNum": 2021, "donAcc_type": "standard", "distance": 3.006, "atom1_id": "///A/106/O", "atom2_id": "///A/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 266, "atom1_serNum": 1992, "atom2_serNum": 2030, "donAcc_type": "standard", "distance": 3.196, "atom1_id": "///A/107/O", "atom2_id": "///A/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 267, "atom1_serNum": 2000, "atom2_serNum": 2039, "donAcc_type": "standard", "distance": 3.114, "atom1_id": "///A/108/O", "atom2_id": "///A/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 268, "atom1_serNum": 2015, "atom2_serNum": 2047, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/109/O", "atom2_id": "///A/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 269, "atom1_serNum": 2024, "atom2_serNum": 2058, "donAcc_type": "standard", "distance": 3.023, "atom1_id": "///A/110/O", "atom2_id": "///A/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 270, "atom1_serNum": 2028, "atom2_serNum": 2057, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/110/OE1", "atom2_id": "///A/113/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 271, "atom1_serNum": 2028, "atom2_serNum": 2066, "donAcc_type": "standard", "distance": 2.661, "atom1_id": "///A/110/OE1", "atom2_id": "///A/114/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 272, "atom1_serNum": 2029, "atom2_serNum": 2054, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///A/110/OE2", "atom2_id": "///A/113/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 273, "atom1_serNum": 2033, "atom2_serNum": 2067, "donAcc_type": "standard", "distance": 3.203, "atom1_id": "///A/111/O", "atom2_id": "///A/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 274, "atom1_serNum": 2042, "atom2_serNum": 2067, "donAcc_type": "standard", "distance": 3.147, "atom1_id": "///A/112/O", "atom2_id": "///A/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 275, "atom1_serNum": 2042, "atom2_serNum": 2072, "donAcc_type": "acceptable", "distance": 2.690, "atom1_id": "///A/112/O", "atom2_id": "///A/115/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 276, "atom1_serNum": 2050, "atom2_serNum": 2073, "donAcc_type": "standard", "distance": 3.402, "atom1_id": "///A/113/O", "atom2_id": "///A/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 277, "atom1_serNum": 2056, "atom2_serNum": 2147, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/113/NH1", "atom2_id": "///A/124/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 278, "atom1_serNum": 2080, "atom2_serNum": 2100, "donAcc_type": "standard", "distance": 3.034, "atom1_id": "///A/117/O", "atom2_id": "///A/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 279, "atom1_serNum": 2080, "atom2_serNum": 2112, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///A/117/O", "atom2_id": "///A/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 280, "atom1_serNum": 2089, "atom2_serNum": 2112, "donAcc_type": "standard", "distance": 3.094, "atom1_id": "///A/118/O", "atom2_id": "///A/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 281, "atom1_serNum": 2103, "atom2_serNum": 2133, "donAcc_type": "standard", "distance": 3.093, "atom1_id": "///A/120/O", "atom2_id": "///A/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 282, "atom1_serNum": 2115, "atom2_serNum": 2141, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///A/121/O", "atom2_id": "///A/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 283, "atom1_serNum": 2115, "atom2_serNum": 2148, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///A/121/O", "atom2_id": "///A/124/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 284, "atom1_serNum": 2126, "atom2_serNum": 2149, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///A/122/O", "atom2_id": "///A/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 285, "atom1_serNum": 2155, "atom2_serNum": 2157, "donAcc_type": "standard", "distance": 2.585, "atom1_id": "///A/125/OD1", "atom2_id": "///A/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 286, "atom1_serNum": 2160, "atom2_serNum": 2179, "donAcc_type": "acceptable", "distance": 2.660, "atom1_id": "///A/126/O", "atom2_id": "///A/128/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 287, "atom1_serNum": 2241, "atom2_serNum": 2257, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///A/136/O", "atom2_id": "///A/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 288, "atom1_serNum": 2241, "atom2_serNum": 2266, "donAcc_type": "standard", "distance": 2.689, "atom1_id": "///A/136/O", "atom2_id": "///A/140/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 289, "atom1_serNum": 2248, "atom2_serNum": 2271, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///A/137/O", "atom2_id": "///A/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 290, "atom1_serNum": 2255, "atom2_serNum": 2283, "donAcc_type": "standard", "distance": 3.084, "atom1_id": "///A/138/O", "atom2_id": "///A/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 291, "atom1_serNum": 2260, "atom2_serNum": 2288, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/139/O", "atom2_id": "///A/143/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 292, "atom1_serNum": 2269, "atom2_serNum": 2299, "donAcc_type": "standard", "distance": 3.010, "atom1_id": "///A/140/O", "atom2_id": "///A/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 293, "atom1_serNum": 2274, "atom2_serNum": 2307, "donAcc_type": "standard", "distance": 3.034, "atom1_id": "///A/141/O", "atom2_id": "///A/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 294, "atom1_serNum": 2286, "atom2_serNum": 2311, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///A/142/O", "atom2_id": "///A/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 295, "atom1_serNum": 2291, "atom2_serNum": 2321, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/143/O", "atom2_id": "///A/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 296, "atom1_serNum": 2302, "atom2_serNum": 2326, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/144/O", "atom2_id": "///A/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 297, "atom1_serNum": 2310, "atom2_serNum": 2334, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///A/145/O", "atom2_id": "///A/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 298, "atom1_serNum": 2314, "atom2_serNum": 2343, "donAcc_type": "standard", "distance": 3.012, "atom1_id": "///A/146/O", "atom2_id": "///A/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 299, "atom1_serNum": 2320, "atom2_serNum": 2351, "donAcc_type": "standard", "distance": 2.650, "atom1_id": "///A/146/NE2", "atom2_id": "///A/150/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 300, "atom1_serNum": 2324, "atom2_serNum": 2352, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///A/147/O", "atom2_id": "///A/151/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 301, "atom1_serNum": 2329, "atom2_serNum": 2360, "donAcc_type": "standard", "distance": 3.436, "atom1_id": "///A/148/O", "atom2_id": "///A/152/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 302, "atom1_serNum": 2342, "atom2_serNum": 2368, "donAcc_type": "standard", "distance": 2.473, "atom1_id": "///A/149/OE2", "atom2_id": "///A/152/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 303, "atom1_serNum": 2346, "atom2_serNum": 2369, "donAcc_type": "standard", "distance": 3.080, "atom1_id": "///A/150/O", "atom2_id": "///A/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 304, "atom1_serNum": 2350, "atom2_serNum": 2377, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///A/150/OE1", "atom2_id": "///A/153/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 305, "atom1_serNum": 2355, "atom2_serNum": 2378, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///A/151/O", "atom2_id": "///A/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 306, "atom1_serNum": 2355, "atom2_serNum": 2389, "donAcc_type": "standard", "distance": 3.171, "atom1_id": "///A/151/O", "atom2_id": "///A/155/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 307, "atom1_serNum": 2363, "atom2_serNum": 2397, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///A/152/O", "atom2_id": "///A/156/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 308, "atom1_serNum": 2400, "atom2_serNum": 2418, "donAcc_type": "questionable", "distance": 3.263, "atom1_id": "///A/156/O", "atom2_id": "///A/158/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 309, "atom1_serNum": 2423, "atom2_serNum": 2455, "donAcc_type": "questionable", "distance": 2.814, "atom1_id": "///E/0/OP2", "atom2_id": "///E/1/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 310, "atom1_serNum": 2507, "atom2_serNum": 2540, "donAcc_type": "questionable", "distance": 3.058, "atom1_id": "///F/1/OP1", "atom2_id": "///F/2/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" } ], "refCoords": { "purine": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 -0.5000 0.4000", " 3 N -2.2500 -0.5000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 1.2500 5.0000 0.4000", " 6 C 1.2500 -0.5000 0.4000", " 7 C 1.2500 -0.5000 -0.4000", " 8 C 1.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 -0.5000 0.4000", " 11 C -2.2500 -0.5000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ], "pyrimidine": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 1.0000 0.4000", " 3 N -2.2500 1.0000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 1.2500 5.0000 0.4000", " 6 C 1.2500 1.0000 0.4000", " 7 C 1.2500 1.0000 -0.4000", " 8 C 1.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 1.0000 0.4000", " 11 C -2.2500 1.0000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ], "wc_pair": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 -5.0000 0.4000", " 3 N -2.2500 -5.0000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 2.2500 5.0000 0.4000", " 6 C 2.2500 -5.0000 0.4000", " 7 C 2.2500 -5.0000 -0.4000", " 8 C 2.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 -5.0000 0.4000", " 11 C -2.2500 -5.0000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ] }, "metadata": { "license": "http://innovation.columbia.edu/technologies/CU20391", "url": "http://x3dna.org/", "url_alt": "http://home.x3dna.org/", "forum": "http://forum.x3dna.org/", "citation": "Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].", "str_id": "5elt", "num_aaChains": 2, "aaChains": "A=146,B=152", "num_naChains": 2, "naChains": "E=4,F=4", "num_atoms": 2588, "num_waters": 11, "num_notes": 52, "notes": [ { "Aminors": "A-minor interactions (including types I and II)" }, { "Cstem_index": "stem index of the 'Canonical' helix in k-turn" }, { "Cstem_pair": "Cstem bp delineating the k-turn internal loop" }, { "Dp": "perpendicular distance of the 3' P atom to the glycosidic bond" }, { "GA_pair": "sheared G-A pair in k-turn" }, { "HtypePknot": "H-type pseudoknot" }, { "Kturn": "kink-turn (k-turn)" }, { "LW": "Leontis-Westhof" }, { "NCstem_index": "stem index of the 'Non-Canonical' helix in k-turn" }, { "NCstem_pair": "NCstem bp delineating the k-turn internal loop" }, { "Uturn": "U-turn of the UNR- or GNRA-type" }, { "aa": "amino acid" }, { "atom_pair": "symbols of the two atoms involved in an H-bond" }, { "auxfiles": "auxiliary files" }, { "glyco_bond": "conformation of base related to sugar (syn or anti)" }, { "bb_type": "backbone conformation, BI or BII" }, { "bending_angle": "angle between two helical axes" }, { "bp": "base pair" }, { "bseq": "base sequence in one-letter code" }, { "bulge": "bulge loop" }, { "coaxStacks": "coaxial stacking of stems within a helix" }, { "dbn": "dot bracket notation" }, { "desc": "description" }, { "donAcc_type": "donor/acceptor type of the atom pair in an H-bond" }, { "epsilon_zeta": "difference between epsilon and zeta torsion angles" }, { "hairpin": "hairpin loop" }, { "hbond": "hydrogen bond (H-bond)" }, { "helix": "defined by base-stacking interactions, regardless of bp type and backbone connectivity" }, { "id": "identifier" }, { "iloop": "internal loop" }, { "index": "serial number" }, { "isoCanonPairs": "isolated canonical pairs" }, { "junction": "(multi-branched) junction loop" }, { "kissingLoop": "kissing loop" }, { "multiplet": "3+ bases in a coplanar geometry" }, { "na": "nucleic acid" }, { "nonPair": "two nts not forming a pair, but with H-bonding/stacking interactions" }, { "nonStack": "nucleotide not involved in stacking interactions" }, { "nt": "nucleotide" }, { "num": "number" }, { "oArea": "overlap areas between two bases, including exocyclic atoms" }, { "oArea_ring": "overlap areas between two bases, including only ring atoms" }, { "phosContacts": "H-bonding and atom-capping interactions involving a phosphate" }, { "residue_pair": "types of the two residues involved in an H-bond" }, { "rmsd": "root-mean-squares deviation" }, { "serNum": "serial number" }, { "ssSegments": "single-stranded segments not involved in loops" }, { "ssZp": "Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane" }, { "sstr": "secondary structure in dbn" }, { "stem": "helix consisting of only canonical pairs, with a continuous backbone" }, { "str_id": "structure identifier, derived from inpfile with extension removed" }, { "vert_dist": "vertical distance from an atom to a base plane" } ], "num_auxfiles": 9, "auxfiles": [ { "index": 1, "name": "dssr-2ndstrs.bpseq", "desc": "secondary structure in bpseq format" }, { "index": 2, "name": "dssr-2ndstrs.ct", "desc": "secondary structure in connectivity table format" }, { "index": 3, "name": "dssr-2ndstrs.dbn", "desc": "secondary structure in dot-bracket notation" }, { "index": 4, "name": "dssr-torsions.txt", "desc": "backbone torsion angles and suite names" }, { "index": 5, "name": "dssr-stacks.pdb", "desc": "an ensemble of base stacks" }, { "index": 6, "name": "dssr-rotmat.txt", "desc": "position vector and rotation matrix" }, { "index": 7, "name": "dssr-viewV.pdb", "desc": "vertical view of the principal moment of inertia" }, { "index": 8, "name": "dssr-viewH.pdb", "desc": "horizontal view of the principal moment of inertia" }, { "index": 9, "name": "dssr-viewT.pdb", "desc": "top view of the principal moment of inertia" } ], "time_used": "999" } }