{ "num_pairs": 830, "pairs": [ { "index": 1, "nt1": "///2/4", "nt2": "///2/20", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.613, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.607, "chi2": 172.590, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.830, "C1C1_dist": 10.665, "N1N9_dist": 8.815, "C6C8_dist": 9.696, "CNNC_torsion": -14.723, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 5.365, "planarity": 0.296, "simple_Shear": 0.118, "simple_Stretch": -0.377, "simple_Buckle": 4.842, "simple_Propeller": -2.312, "bp_simpleParams": [ 0.118, -0.377, 1.114, 4.842, -2.312, -1.382 ], "bp_params": [ 0.116, -0.378, 1.114, 4.827, -2.343, -1.381 ], "frame": { "rmsd": null, "origin": [ 202.776, 182.654, 190.608 ], "x_axis": [ 0.129, 0.447, -0.885 ], "y_axis": [ -0.763, -0.526, -0.377 ], "z_axis": [ -0.634, 0.724, 0.273 ], "quaternion": [ 0.468, -0.588, 0.134, 0.646 ] } }, { "index": 2, "nt1": "///2/5", "nt2": "///2/19", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.838, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.464, "chi2": -166.187, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.084, "C1C1_dist": 10.498, "N1N9_dist": 8.815, "C6C8_dist": 9.800, "CNNC_torsion": -7.396, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.82],O4(carbonyl)-N6(amino)[2.98]", "interBase_angle": 4.097, "planarity": 0.141, "simple_Shear": -0.083, "simple_Stretch": -0.158, "simple_Buckle": 2.454, "simple_Propeller": -3.280, "bp_simpleParams": [ -0.083, -0.158, 0.541, 2.454, -3.280, 1.561 ], "bp_params": [ -0.081, -0.159, 0.541, 2.497, -3.247, 1.561 ], "frame": { "rmsd": null, "origin": [ 202.201, 186.086, 192.255 ], "x_axis": [ -0.337, 0.071, -0.939 ], "y_axis": [ -0.718, -0.665, 0.207 ], "z_axis": [ -0.609, 0.744, 0.275 ], "quaternion": [ 0.261, -0.513, 0.315, 0.754 ] } }, { "index": 3, "nt1": "///2/6", "nt2": "///2/18", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.216, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.649, "chi2": -158.598, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.128, "C1C1_dist": 10.699, "N1N9_dist": 8.916, "C6C8_dist": 9.823, "CNNC_torsion": -0.207, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 11.751, "planarity": 0.144, "simple_Shear": -0.207, "simple_Stretch": -0.179, "simple_Buckle": -9.705, "simple_Propeller": -6.626, "bp_simpleParams": [ -0.207, -0.179, -0.625, -9.705, -6.626, 0.205 ], "bp_params": [ -0.204, -0.182, -0.625, -9.622, -6.747, 0.204 ], "frame": { "rmsd": null, "origin": [ 201.567, 189.789, 192.644 ], "x_axis": [ -0.517, -0.537, -0.667 ], "y_axis": [ -0.480, -0.463, 0.745 ], "z_axis": [ -0.709, 0.705, -0.019 ], "quaternion": [ -0.020, -0.491, 0.518, 0.700 ] } }, { "index": 4, "nt1": "///2/7", "nt2": "///2/17", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.267, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.532, "chi2": -155.989, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.208, "C1C1_dist": 10.866, "N1N9_dist": 9.272, "C6C8_dist": 10.337, "CNNC_torsion": -4.040, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.57],N1(imino)-N3[3.33],N2(amino)-O2(carbonyl)[2.94]", "interBase_angle": 14.285, "planarity": 0.208, "simple_Shear": -0.033, "simple_Stretch": 0.400, "simple_Buckle": -13.912, "simple_Propeller": -3.242, "bp_simpleParams": [ -0.033, 0.400, 0.142, -13.912, -3.242, 6.392 ], "bp_params": [ -0.032, 0.400, 0.142, -13.927, -3.177, 6.347 ], "frame": { "rmsd": null, "origin": [ 198.957, 192.571, 191.388 ], "x_axis": [ -0.669, -0.721, -0.181 ], "y_axis": [ -0.108, -0.146, 0.983 ], "z_axis": [ -0.735, 0.678, 0.020 ], "quaternion": [ -0.226, -0.338, 0.613, 0.677 ] } }, { "index": 5, "nt1": "///2/8", "nt2": "///2/15", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "t.W", "DSSR": "t.-W", "intra_chain": true, "chi1": -119.593, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 5.869, "chi2": -165.044, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 17.009, "C1C1_dist": 12.753, "N1N9_dist": 9.886, "C6C8_dist": 8.864, "CNNC_torsion": 113.725, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)*O4(carbonyl)[2.75]", "interBase_angle": 9.551, "planarity": 0.154, "simple_Shear": -1.654, "simple_Stretch": 2.027, "simple_Buckle": 7.510, "simple_Propeller": 5.901, "bp_simpleParams": [ -1.654, 2.027, -0.149, 7.510, 5.901, -92.386 ], "bp_params": [ -2.081, 1.585, -0.149, 5.928, 7.489, -92.432 ], "frame": { "rmsd": null, "origin": [ 195.778, 199.714, 189.153 ], "x_axis": [ -0.495, -0.816, 0.298 ], "y_axis": [ 0.293, 0.165, 0.942 ], "z_axis": [ -0.818, 0.553, 0.157 ], "quaternion": [ -0.455, -0.213, 0.613, 0.610 ] } }, { "index": 6, "nt1": "///2/8", "nt2": "///2/1196", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -119.593, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 63.209, "chi2": -166.666, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.531, "C1C1_dist": 8.527, "N1N9_dist": 6.820, "C6C8_dist": 6.388, "CNNC_torsion": 1.377, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)*OP2[2.77],N3(imino)-N7[2.90],O4(carbonyl)-N6(amino)[2.63]", "interBase_angle": 4.586, "planarity": 0.067, "simple_Shear": -2.897, "simple_Stretch": 1.326, "simple_Buckle": -0.270, "simple_Propeller": 4.578, "bp_simpleParams": [ -2.897, 1.326, -0.045, -0.270, 4.578, -72.267 ], "bp_params": [ -0.359, 3.165, -0.045, 3.783, 2.593, -72.251 ], "frame": { "rmsd": null, "origin": [ 196.166, 200.472, 188.052 ], "x_axis": [ -0.496, -0.860, 0.121 ], "y_axis": [ 0.197, 0.024, 0.980 ], "z_axis": [ -0.845, 0.510, 0.157 ], "quaternion": [ -0.414, -0.284, 0.584, 0.638 ] } }, { "index": 7, "nt1": "///2/10", "nt2": "///2/1202", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.100, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.984, "chi2": -149.795, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.279, "C1C1_dist": 9.949, "N1N9_dist": 8.416, "C6C8_dist": 9.305, "CNNC_torsion": -11.978, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O4(carbonyl)[3.26],N2(amino)-O2(carbonyl)[3.31]", "interBase_angle": 49.547, "planarity": 0.809, "simple_Shear": 1.457, "simple_Stretch": 0.250, "simple_Buckle": -47.183, "simple_Propeller": -15.123, "bp_simpleParams": [ 1.457, 0.250, 1.160, -47.183, -15.123, 1.090 ], "bp_params": [ 1.479, -0.012, 1.160, -49.211, -5.760, 0.993 ], "frame": { "rmsd": null, "origin": [ 184.342, 203.253, 202.525 ], "x_axis": [ 0.283, 0.536, -0.796 ], "y_axis": [ 0.958, -0.118, 0.261 ], "z_axis": [ 0.046, -0.836, -0.546 ], "quaternion": [ 0.393, 0.698, 0.535, -0.269 ] } }, { "index": 8, "nt1": "///2/11", "nt2": "///2/1200", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.756, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.848, "chi2": -131.495, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 70.861, "C1C1_dist": 12.040, "N1N9_dist": 10.468, "C6C8_dist": 11.280, "CNNC_torsion": 12.066, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.30]", "interBase_angle": 28.438, "planarity": 0.471, "simple_Shear": -2.302, "simple_Stretch": 1.951, "simple_Buckle": -25.730, "simple_Propeller": 12.110, "bp_simpleParams": [ -2.302, 1.951, -1.640, -25.730, 12.110, 2.952 ], "bp_params": [ -2.713, 1.320, -1.640, -27.955, 5.218, 2.867 ], "frame": { "rmsd": null, "origin": [ 185.054, 201.345, 197.119 ], "x_axis": [ 0.562, 0.665, -0.492 ], "y_axis": [ 0.778, -0.222, 0.588 ], "z_axis": [ 0.282, -0.713, -0.642 ], "quaternion": [ 0.418, 0.779, 0.463, -0.068 ] } }, { "index": 9, "nt1": "///2/11", "nt2": "///2/1201", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.756, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.204, "chi2": -155.584, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.897, "C1C1_dist": 9.972, "N1N9_dist": 8.295, "C6C8_dist": 9.116, "CNNC_torsion": 3.105, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.78],N1-N3(imino)[3.12]", "interBase_angle": 41.388, "planarity": 0.623, "simple_Shear": 1.425, "simple_Stretch": -0.252, "simple_Buckle": -39.617, "simple_Propeller": 11.977, "bp_simpleParams": [ 1.425, -0.252, 1.094, -39.617, 11.977, -0.213 ], "bp_params": [ 1.380, -0.438, 1.094, -37.865, 16.710, -0.204 ], "frame": { "rmsd": null, "origin": [ 184.238, 200.817, 199.542 ], "x_axis": [ 0.610, 0.588, -0.531 ], "y_axis": [ 0.777, -0.309, 0.549 ], "z_axis": [ 0.158, -0.747, -0.646 ], "quaternion": [ 0.405, 0.801, 0.426, -0.116 ] } }, { "index": 10, "nt1": "///2/11", "nt2": "///2/1357", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": 169.756, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.264, "chi2": -145.075, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 148.847, "C1C1_dist": 6.497, "N1N9_dist": 7.695, "C6C8_dist": 10.161, "CNNC_torsion": -25.142, "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.82]", "interBase_angle": 12.087, "planarity": 0.201, "simple_Shear": -1.412, "simple_Stretch": 6.312, "simple_Buckle": -9.948, "simple_Propeller": -6.866, "bp_simpleParams": [ -1.412, 6.312, -0.232, -9.948, -6.866, 131.490 ], "bp_params": [ -3.505, 5.437, -0.232, -6.971, -9.874, 131.569 ], "frame": { "rmsd": null, "origin": [ 181.676, 199.973, 197.586 ], "x_axis": [ -0.419, 0.406, -0.812 ], "y_axis": [ 0.813, 0.565, -0.138 ], "z_axis": [ 0.403, -0.718, -0.567 ], "quaternion": [ 0.380, 0.382, 0.799, -0.268 ] } }, { "index": 11, "nt1": "///2/12", "nt2": "///2/1199", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.316, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.068, "chi2": -159.655, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.158, "C1C1_dist": 10.635, "N1N9_dist": 8.883, "C6C8_dist": 9.798, "CNNC_torsion": 10.573, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.87],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 13.214, "planarity": 0.226, "simple_Shear": 0.026, "simple_Stretch": -0.145, "simple_Buckle": -7.687, "simple_Propeller": 10.748, "bp_simpleParams": [ 0.026, -0.145, -0.549, -7.687, 10.748, -1.537 ], "bp_params": [ 0.027, -0.145, -0.549, -7.738, 10.712, -1.541 ], "frame": { "rmsd": null, "origin": [ 185.686, 199.736, 194.070 ], "x_axis": [ 0.889, 0.452, 0.080 ], "y_axis": [ 0.196, -0.531, 0.824 ], "z_axis": [ 0.415, -0.717, -0.560 ], "quaternion": [ 0.446, 0.863, 0.188, 0.143 ] } }, { "index": 12, "nt1": "///2/12", "nt2": "///2/1356", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -159.316, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 151.295, "chi2": -139.137, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 101.606, "C1C1_dist": 5.504, "N1N9_dist": 7.175, "C6C8_dist": 9.738, "CNNC_torsion": -28.903, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.19],O2'(hydroxyl)-N3[2.87],O2(carbonyl)-N2(amino)[2.48]", "interBase_angle": 17.439, "planarity": 0.288, "simple_Shear": 0.618, "simple_Stretch": 7.184, "simple_Buckle": -11.315, "simple_Propeller": -13.270, "bp_simpleParams": [ 0.618, 7.184, -0.350, -11.315, -13.270, 150.360 ], "bp_params": [ 2.087, 6.902, -0.350, -13.802, -10.658, 150.275 ], "frame": { "rmsd": null, "origin": [ 182.479, 198.130, 193.917 ], "x_axis": [ 0.004, 0.660, -0.752 ], "y_axis": [ 0.915, 0.301, 0.269 ], "z_axis": [ 0.403, -0.689, -0.602 ], "quaternion": [ 0.419, 0.571, 0.689, -0.152 ] } }, { "index": 13, "nt1": "///2/13", "nt2": "///2/1198", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.755, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.321, "chi2": -174.717, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.050, "C1C1_dist": 10.823, "N1N9_dist": 8.989, "C6C8_dist": 9.903, "CNNC_torsion": 9.660, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 14.592, "planarity": 0.183, "simple_Shear": 0.156, "simple_Stretch": -0.118, "simple_Buckle": 0.466, "simple_Propeller": 14.585, "bp_simpleParams": [ 0.156, -0.118, -0.134, 0.466, 14.585, 0.033 ], "bp_params": [ 0.154, -0.119, -0.134, 0.627, 14.579, 0.033 ], "frame": { "rmsd": null, "origin": [ 187.792, 198.769, 191.529 ], "x_axis": [ 0.765, 0.179, 0.619 ], "y_axis": [ -0.325, -0.722, 0.611 ], "z_axis": [ 0.556, -0.668, -0.494 ], "quaternion": [ 0.370, 0.863, -0.042, 0.340 ] } }, { "index": 14, "nt1": "///2/14", "nt2": "///2/668", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -175.504, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 82.467, "chi2": -92.299, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.069, "C1C1_dist": 8.299, "N1N9_dist": 7.929, "C6C8_dist": 10.262, "CNNC_torsion": 162.877, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N1[2.91]", "interBase_angle": 22.041, "planarity": 0.304, "simple_Shear": 7.208, "simple_Stretch": 3.653, "simple_Buckle": 15.849, "simple_Propeller": -15.316, "bp_simpleParams": [ 7.208, 3.653, 1.259, 15.849, -15.316, -157.634 ], "bp_params": [ -2.844, -7.564, 1.259, -22.033, 0.573, -157.225 ], "frame": { "rmsd": null, "origin": [ 189.587, 197.648, 187.078 ], "x_axis": [ -0.515, -0.822, 0.242 ], "y_axis": [ -0.196, -0.161, -0.967 ], "z_axis": [ 0.834, -0.546, -0.078 ], "quaternion": [ -0.248, 0.426, -0.598, 0.632 ] } }, { "index": 15, "nt1": "///2/14", "nt2": "///2/1197", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.504, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.790, "chi2": 178.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.453, "C1C1_dist": 10.783, "N1N9_dist": 8.966, "C6C8_dist": 9.884, "CNNC_torsion": -1.834, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 6.647, "planarity": 0.136, "simple_Shear": 0.165, "simple_Stretch": -0.127, "simple_Buckle": -5.987, "simple_Propeller": -2.887, "bp_simpleParams": [ 0.165, -0.127, -0.236, -5.987, -2.887, 0.172 ], "bp_params": [ 0.163, -0.129, -0.236, -6.023, -2.812, 0.172 ], "frame": { "rmsd": null, "origin": [ 191.629, 198.976, 190.238 ], "x_axis": [ 0.224, -0.094, 0.970 ], "y_axis": [ -0.536, -0.843, 0.042 ], "z_axis": [ 0.814, -0.529, -0.239 ], "quaternion": [ 0.188, 0.759, -0.208, 0.587 ] } }, { "index": 16, "nt1": "///2/15", "nt2": "///2/1196", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.044, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.304, "chi2": -166.666, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.539, "C1C1_dist": 11.815, "N1N9_dist": 9.770, "C6C8_dist": 10.227, "CNNC_torsion": 6.233, "hbonds_num": 1, "hbonds_desc": "N3(imino)*N6(amino)[3.31]", "interBase_angle": 5.862, "planarity": 0.095, "simple_Shear": 2.659, "simple_Stretch": 0.809, "simple_Buckle": -5.478, "simple_Propeller": 2.087, "bp_simpleParams": [ 2.659, 0.809, -0.163, -5.478, 2.087, -20.013 ], "bp_params": [ 2.779, 0.063, -0.163, -4.714, 3.484, -20.005 ], "frame": { "rmsd": null, "origin": [ 195.358, 199.533, 187.627 ], "x_axis": [ -0.220, -0.566, 0.795 ], "y_axis": [ -0.561, -0.593, -0.578 ], "z_axis": [ 0.798, -0.573, -0.187 ], "quaternion": [ -0.002, 0.624, -0.451, 0.638 ] } }, { "index": 17, "nt1": "///2/16", "nt2": "///2/1195", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -160.146, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 95.551, "chi2": -171.703, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.362, "C1C1_dist": 10.152, "N1N9_dist": 8.930, "C6C8_dist": 9.467, "CNNC_torsion": 18.200, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[3.02],N3-N6(amino)[2.81]", "interBase_angle": 8.013, "planarity": 0.105, "simple_Shear": 6.996, "simple_Stretch": 2.535, "simple_Buckle": -0.128, "simple_Propeller": 8.012, "bp_simpleParams": [ 6.996, 2.535, -0.316, -0.128, 8.012, -0.917 ], "bp_params": [ 6.719, -3.196, -0.316, 5.611, 5.720, -0.917 ], "frame": { "rmsd": null, "origin": [ 197.720, 196.860, 189.041 ], "x_axis": [ -0.570, -0.816, 0.098 ], "y_axis": [ -0.159, -0.007, -0.987 ], "z_axis": [ 0.806, -0.578, -0.126 ], "quaternion": [ 0.272, -0.375, 0.650, -0.602 ] } }, { "index": 18, "nt1": "///2/21", "nt2": "///2/653", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.134, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.504, "chi2": -160.643, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.801, "C1C1_dist": 11.188, "N1N9_dist": 9.526, "C6C8_dist": 10.463, "CNNC_torsion": 10.868, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.79],O4(carbonyl)-N6(amino)[3.85]", "interBase_angle": 8.352, "planarity": 0.311, "simple_Shear": 0.429, "simple_Stretch": 0.395, "simple_Buckle": 7.465, "simple_Propeller": -3.745, "bp_simpleParams": [ 0.429, 0.395, -1.793, 7.465, -3.745, 1.404 ], "bp_params": [ 0.443, 0.379, -1.793, 7.323, -4.016, 1.402 ], "frame": { "rmsd": null, "origin": [ 206.900, 179.744, 186.287 ], "x_axis": [ 0.624, 0.762, -0.175 ], "y_axis": [ 0.230, 0.036, 0.973 ], "z_axis": [ 0.747, -0.647, -0.153 ], "quaternion": [ 0.614, 0.660, 0.376, 0.217 ] } }, { "index": 19, "nt1": "///2/22", "nt2": "///2/652", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.314, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.093, "chi2": -156.505, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.180, "C1C1_dist": 10.428, "N1N9_dist": 8.824, "C6C8_dist": 9.847, "CNNC_torsion": -0.916, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.03],N1-N3(imino)[2.83]", "interBase_angle": 6.312, "planarity": 0.080, "simple_Shear": 0.028, "simple_Stretch": -0.093, "simple_Buckle": -4.684, "simple_Propeller": -4.231, "bp_simpleParams": [ 0.028, -0.093, -0.331, -4.684, -4.231, 3.588 ], "bp_params": [ 0.027, -0.094, -0.331, -4.721, -4.190, 3.588 ], "frame": { "rmsd": null, "origin": [ 210.404, 178.204, 184.645 ], "x_axis": [ 0.319, 0.877, 0.360 ], "y_axis": [ -0.082, -0.353, 0.932 ], "z_axis": [ 0.944, -0.327, -0.041 ], "quaternion": [ 0.481, 0.654, 0.304, 0.498 ] } }, { "index": 20, "nt1": "///2/23", "nt2": "///2/651", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.961, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.869, "chi2": -162.033, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 73.253, "C1C1_dist": 10.487, "N1N9_dist": 8.806, "C6C8_dist": 9.565, "CNNC_torsion": -1.858, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)*O2(carbonyl)[2.44],O6(carbonyl)-N3(imino)[2.90],N1(imino)-O2(carbonyl)[2.95]", "unusual_base2base_hbonds": 1, "interBase_angle": 7.465, "planarity": 0.123, "simple_Shear": -3.906, "simple_Stretch": 0.375, "simple_Buckle": 4.133, "simple_Propeller": -6.216, "bp_simpleParams": [ -3.906, 0.375, -0.144, 4.133, -6.216, -4.056 ], "bp_params": [ -3.746, -1.169, -0.144, 6.219, -4.128, -4.053 ], "frame": { "rmsd": null, "origin": [ 213.659, 178.705, 182.847 ], "x_axis": [ 0.180, 0.836, 0.518 ], "y_axis": [ -0.188, -0.487, 0.853 ], "z_axis": [ 0.965, -0.251, 0.069 ], "quaternion": [ 0.437, 0.632, 0.256, 0.587 ] } }, { "index": 21, "nt1": "///2/24", "nt2": "///2/650", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.979, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 72.599, "chi2": -164.442, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.890, "C1C1_dist": 10.171, "N1N9_dist": 8.927, "C6C8_dist": 10.295, "CNNC_torsion": -11.102, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*N1[3.13],N3-N6(amino)[3.96]", "unusual_base2base_hbonds": 1, "interBase_angle": 15.995, "planarity": 0.198, "simple_Shear": 1.449, "simple_Stretch": 0.649, "simple_Buckle": 8.088, "simple_Propeller": -13.800, "bp_simpleParams": [ 1.449, 0.649, -0.228, 8.088, -13.800, 23.127 ], "bp_params": [ 1.525, 0.444, -0.228, 6.097, -14.788, 23.284 ], "frame": { "rmsd": null, "origin": [ 217.476, 178.893, 183.900 ], "x_axis": [ -0.028, 0.117, 0.993 ], "y_axis": [ -0.234, -0.966, 0.107 ], "z_axis": [ 0.972, -0.229, 0.054 ], "quaternion": [ 0.123, 0.686, -0.043, 0.716 ] } }, { "index": 22, "nt1": "///2/25", "nt2": "///2/649", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -119.864, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 56.393, "chi2": -160.997, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.116, "C1C1_dist": 10.656, "N1N9_dist": 9.108, "C6C8_dist": 10.168, "CNNC_torsion": -2.627, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.56],N1-N3(imino)[3.27]", "interBase_angle": 18.366, "planarity": 0.214, "simple_Shear": -0.404, "simple_Stretch": 0.293, "simple_Buckle": -15.285, "simple_Propeller": -10.183, "bp_simpleParams": [ -0.404, 0.293, -0.867, -15.285, -10.183, 7.092 ], "bp_params": [ -0.413, 0.281, -0.867, -14.997, -10.602, 7.062 ], "frame": { "rmsd": null, "origin": [ 220.526, 179.445, 185.027 ], "x_axis": [ -0.723, -0.212, 0.657 ], "y_axis": [ 0.071, -0.969, -0.235 ], "z_axis": [ 0.687, -0.123, 0.716 ], "quaternion": [ -0.077, 0.364, -0.097, 0.923 ] } }, { "index": 23, "nt1": "///2/26", "nt2": "///2/648", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -151.975, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.455, "chi2": -146.760, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.052, "C1C1_dist": 10.685, "N1N9_dist": 8.875, "C6C8_dist": 9.745, "CNNC_torsion": 5.198, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.93],O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 5.634, "planarity": 0.252, "simple_Shear": -0.085, "simple_Stretch": -0.246, "simple_Buckle": -4.130, "simple_Propeller": -3.831, "bp_simpleParams": [ -0.085, -0.246, -1.033, -4.130, -3.831, -2.144 ], "bp_params": [ -0.082, -0.247, -1.033, -4.079, -3.885, -2.144 ], "frame": { "rmsd": null, "origin": [ 223.627, 180.336, 186.816 ], "x_axis": [ -0.615, -0.683, 0.395 ], "y_axis": [ 0.398, -0.701, -0.592 ], "z_axis": [ 0.681, -0.207, 0.702 ], "quaternion": [ -0.311, 0.310, -0.230, 0.869 ] } }, { "index": 24, "nt1": "///2/27", "nt2": "///2/647", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.168, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.638, "chi2": -159.931, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.761, "C1C1_dist": 10.917, "N1N9_dist": 9.277, "C6C8_dist": 10.307, "CNNC_torsion": 8.357, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.54],N1-N3(imino)[3.29]", "interBase_angle": 6.591, "planarity": 0.148, "simple_Shear": 0.630, "simple_Stretch": 0.367, "simple_Buckle": -0.722, "simple_Propeller": 6.551, "bp_simpleParams": [ 0.630, 0.367, -0.617, -0.722, 6.551, 3.327 ], "bp_params": [ 0.653, 0.323, -0.617, -0.271, 6.585, 3.332 ], "frame": { "rmsd": null, "origin": [ 225.013, 179.041, 190.085 ], "x_axis": [ -0.418, -0.901, -0.117 ], "y_axis": [ 0.660, -0.213, -0.720 ], "z_axis": [ 0.624, -0.379, 0.684 ], "quaternion": [ 0.513, -0.166, 0.361, -0.761 ] } }, { "index": 25, "nt1": "///2/28", "nt2": "///2/646", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.348, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.196, "chi2": -174.964, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.085, "C1C1_dist": 10.936, "N1N9_dist": 9.174, "C6C8_dist": 9.990, "CNNC_torsion": 4.818, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.29],N3(imino)-O6(carbonyl)[3.21]", "interBase_angle": 10.735, "planarity": 0.138, "simple_Shear": 1.675, "simple_Stretch": 0.150, "simple_Buckle": 10.653, "simple_Propeller": 1.328, "bp_simpleParams": [ 1.675, 0.150, -0.724, 10.653, 1.328, -4.825 ], "bp_params": [ 1.677, -0.126, -0.724, 10.726, -0.439, -4.804 ], "frame": { "rmsd": null, "origin": [ 225.754, 177.708, 193.129 ], "x_axis": [ 0.020, -0.854, -0.520 ], "y_axis": [ 0.816, 0.314, -0.485 ], "z_axis": [ 0.578, -0.415, 0.703 ], "quaternion": [ 0.714, -0.025, 0.385, -0.585 ] } }, { "index": 26, "nt1": "///2/29", "nt2": "///2/645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.891, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.858, "chi2": -171.898, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.135, "C1C1_dist": 10.554, "N1N9_dist": 8.881, "C6C8_dist": 9.875, "CNNC_torsion": 8.335, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 12.574, "planarity": 0.169, "simple_Shear": -0.233, "simple_Stretch": -0.147, "simple_Buckle": 0.202, "simple_Propeller": 12.572, "bp_simpleParams": [ -0.233, -0.147, 0.168, 0.202, 12.572, 3.073 ], "bp_params": [ -0.230, -0.151, 0.168, -0.033, 12.574, 3.092 ], "frame": { "rmsd": null, "origin": [ 226.384, 174.658, 195.685 ], "x_axis": [ 0.248, -0.553, -0.796 ], "y_axis": [ 0.706, 0.665, -0.242 ], "z_axis": [ 0.663, -0.502, 0.555 ], "quaternion": [ 0.786, 0.083, 0.464, -0.401 ] } }, { "index": 27, "nt1": "///2/30", "nt2": "///2/644", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.625, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.802, "chi2": -171.273, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.804, "C1C1_dist": 10.553, "N1N9_dist": 8.915, "C6C8_dist": 9.911, "CNNC_torsion": 13.570, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 15.626, "planarity": 0.211, "simple_Shear": 0.173, "simple_Stretch": -0.105, "simple_Buckle": 5.996, "simple_Propeller": 14.430, "bp_simpleParams": [ 0.173, -0.105, -0.220, 5.996, 14.430, 2.601 ], "bp_params": [ 0.171, -0.108, -0.220, 6.207, 14.340, 2.618 ], "frame": { "rmsd": null, "origin": [ 227.500, 171.415, 197.165 ], "x_axis": [ 0.519, -0.078, -0.851 ], "y_axis": [ 0.520, 0.819, 0.242 ], "z_axis": [ 0.679, -0.568, 0.466 ], "quaternion": [ 0.837, 0.242, 0.457, -0.179 ] } }, { "index": 28, "nt1": "///2/31", "nt2": "///2/516", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -163.156, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 37.397, "chi2": -53.822, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 20.680, "C1C1_dist": 9.511, "N1N9_dist": 7.098, "C6C8_dist": 6.336, "CNNC_torsion": 157.741, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.91],N3(imino)-N7[3.01]", "interBase_angle": 11.753, "planarity": 0.269, "simple_Shear": 4.923, "simple_Stretch": 1.170, "simple_Buckle": -11.688, "simple_Propeller": -1.232, "bp_simpleParams": [ 4.923, 1.170, -0.866, -11.688, -1.232, -89.754 ], "bp_params": [ 4.312, -2.647, -0.866, -9.144, 7.384, -89.691 ], "frame": { "rmsd": null, "origin": [ 228.907, 167.229, 196.009 ], "x_axis": [ 0.628, 0.724, 0.284 ], "y_axis": [ -0.270, -0.140, 0.953 ], "z_axis": [ 0.730, -0.675, 0.108 ], "quaternion": [ 0.632, 0.644, 0.176, 0.394 ] } }, { "index": 29, "nt1": "///2/33", "nt2": "///2/643", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": 176.042, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 19.135, "chi2": -105.800, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 42.697, "C1C1_dist": 8.865, "N1N9_dist": 6.546, "C6C8_dist": 4.110, "CNNC_torsion": 150.500, "hbonds_num": 1, "hbonds_desc": "N7*N7[3.14]", "interBase_angle": 29.327, "planarity": 0.511, "simple_Shear": -9.476, "simple_Stretch": 3.253, "simple_Buckle": 15.516, "simple_Propeller": -24.886, "bp_simpleParams": [ -9.476, 3.253, 1.439, 15.516, -24.886, -161.649 ], "bp_params": [ -9.217, 3.927, 1.439, 13.566, -26.001, -161.982 ], "frame": { "rmsd": null, "origin": [ 227.295, 161.370, 201.272 ], "x_axis": [ 0.518, 0.673, 0.528 ], "y_axis": [ 0.534, -0.737, 0.414 ], "z_axis": [ 0.668, 0.067, -0.741 ], "quaternion": [ 0.100, 0.865, 0.349, 0.345 ] } }, { "index": 30, "nt1": "///2/34", "nt2": "///2/521", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.291, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.975, "chi2": -160.505, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.625, "C1C1_dist": 10.610, "N1N9_dist": 8.886, "C6C8_dist": 9.792, "CNNC_torsion": 11.333, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[2.98]", "interBase_angle": 5.509, "planarity": 0.246, "simple_Shear": -0.125, "simple_Stretch": -0.205, "simple_Buckle": -3.804, "simple_Propeller": 3.986, "bp_simpleParams": [ -0.125, -0.205, -0.981, -3.804, 3.986, -2.040 ], "bp_params": [ -0.121, -0.207, -0.981, -3.873, 3.918, -2.040 ], "frame": { "rmsd": null, "origin": [ 226.170, 155.233, 194.209 ], "x_axis": [ -0.074, 0.995, -0.070 ], "y_axis": [ 0.875, 0.098, 0.474 ], "z_axis": [ 0.479, -0.026, -0.878 ], "quaternion": [ 0.192, 0.653, 0.716, 0.156 ] } }, { "index": 31, "nt1": "///2/35", "nt2": "///2/520", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.657, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 73.226, "chi2": -163.717, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.156, "C1C1_dist": 10.475, "N1N9_dist": 9.127, "C6C8_dist": 10.348, "CNNC_torsion": 0.883, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*N1[3.04],N3-N6(amino)[3.68]", "unusual_base2base_hbonds": 1, "interBase_angle": 2.981, "planarity": 0.066, "simple_Shear": 2.047, "simple_Stretch": 0.692, "simple_Buckle": 2.555, "simple_Propeller": -1.535, "bp_simpleParams": [ 2.047, 0.692, -0.357, 2.555, -1.535, 15.882 ], "bp_params": [ 2.144, 0.267, -0.357, 2.195, -2.016, 15.881 ], "frame": { "rmsd": null, "origin": [ 226.836, 156.602, 190.931 ], "x_axis": [ 0.383, 0.856, 0.347 ], "y_axis": [ 0.755, -0.506, 0.416 ], "z_axis": [ 0.532, 0.102, -0.841 ], "quaternion": [ 0.095, 0.826, 0.488, 0.266 ] } }, { "index": 32, "nt1": "///2/36", "nt2": "///2/519", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.129, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.012, "chi2": -176.525, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.244, "C1C1_dist": 10.492, "N1N9_dist": 8.845, "C6C8_dist": 9.854, "CNNC_torsion": 6.381, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.82],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 8.393, "planarity": 0.101, "simple_Shear": -0.073, "simple_Stretch": -0.090, "simple_Buckle": 0.972, "simple_Propeller": 8.337, "bp_simpleParams": [ -0.073, -0.090, -0.053, 0.972, 8.337, 2.855 ], "bp_params": [ -0.072, -0.091, -0.053, 0.869, 8.348, 2.863 ], "frame": { "rmsd": null, "origin": [ 226.708, 157.850, 187.028 ], "x_axis": [ 0.579, 0.565, 0.588 ], "y_axis": [ 0.514, -0.812, 0.275 ], "z_axis": [ 0.633, 0.143, -0.761 ], "quaternion": [ 0.037, 0.888, 0.304, 0.344 ] } }, { "index": 33, "nt1": "///2/37", "nt2": "///2/518", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.390, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.505, "chi2": -167.940, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.977, "C1C1_dist": 10.648, "N1N9_dist": 8.921, "C6C8_dist": 9.874, "CNNC_torsion": 6.961, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 4.934, "planarity": 0.140, "simple_Shear": 0.170, "simple_Stretch": -0.161, "simple_Buckle": -3.536, "simple_Propeller": 3.440, "bp_simpleParams": [ 0.170, -0.161, -0.474, -3.536, 3.440, 0.688 ], "bp_params": [ 0.168, -0.163, -0.474, -3.495, 3.483, 0.688 ], "frame": { "rmsd": null, "origin": [ 228.222, 160.972, 184.770 ], "x_axis": [ 0.664, 0.075, 0.744 ], "y_axis": [ 0.286, -0.945, -0.159 ], "z_axis": [ 0.691, 0.319, -0.649 ], "quaternion": [ -0.132, 0.902, 0.100, 0.398 ] } }, { "index": 34, "nt1": "///2/38", "nt2": "///2/517", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm-W", "intra_chain": true, "chi1": -174.378, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 105.784, "chi2": -164.818, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.198, "C1C1_dist": 9.338, "N1N9_dist": 8.367, "C6C8_dist": 9.107, "CNNC_torsion": 62.357, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N4(amino)[3.35],N3-N4(amino)[2.68]", "interBase_angle": 8.038, "planarity": 0.131, "simple_Shear": 7.472, "simple_Stretch": 2.546, "simple_Buckle": -5.267, "simple_Propeller": 6.072, "bp_simpleParams": [ 7.472, 2.546, -0.522, -5.267, 6.072, 8.564 ], "bp_params": [ 6.815, -3.984, -0.522, 1.146, 7.956, 8.584 ], "frame": { "rmsd": null, "origin": [ 230.664, 162.566, 183.067 ], "x_axis": [ 0.565, -0.758, 0.326 ], "y_axis": [ -0.393, -0.594, -0.702 ], "z_axis": [ 0.725, 0.268, -0.634 ], "quaternion": [ -0.290, 0.836, -0.344, 0.314 ] } }, { "index": 35, "nt1": "///2/39", "nt2": "///2/515", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 179.705, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 5.022, "chi2": -150.068, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 94.817, "C1C1_dist": 9.681, "N1N9_dist": 8.484, "C6C8_dist": 8.675, "CNNC_torsion": -168.647, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.08],N6(amino)-O2'(hydroxyl)[3.60]", "interBase_angle": 7.037, "planarity": 0.104, "simple_Shear": -8.225, "simple_Stretch": 3.494, "simple_Buckle": 2.974, "simple_Propeller": 6.378, "bp_simpleParams": [ -8.225, 3.494, 0.243, 2.974, 6.378, -18.240 ], "bp_params": [ -7.331, -5.110, 0.243, -3.824, 5.907, -18.254 ], "frame": { "rmsd": null, "origin": [ 234.424, 165.146, 183.063 ], "x_axis": [ 0.569, -0.691, 0.446 ], "y_axis": [ -0.303, -0.680, -0.667 ], "z_axis": [ 0.764, 0.244, -0.597 ], "quaternion": [ -0.270, 0.844, -0.295, 0.359 ] } }, { "index": 36, "nt1": "///2/40", "nt2": "///2/514", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.539, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.021, "chi2": -162.213, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.056, "C1C1_dist": 10.643, "N1N9_dist": 8.930, "C6C8_dist": 9.866, "CNNC_torsion": -5.489, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.96]", "interBase_angle": 14.165, "planarity": 0.216, "simple_Shear": -0.052, "simple_Stretch": -0.099, "simple_Buckle": 1.688, "simple_Propeller": -14.064, "bp_simpleParams": [ -0.052, -0.099, -0.631, 1.688, -14.064, 0.939 ], "bp_params": [ -0.052, -0.099, -0.631, 1.697, -14.063, 0.946 ], "frame": { "rmsd": null, "origin": [ 237.815, 165.144, 181.614 ], "x_axis": [ -0.173, -0.932, -0.318 ], "y_axis": [ -0.591, 0.356, -0.724 ], "z_axis": [ 0.788, 0.063, -0.613 ], "quaternion": [ 0.378, -0.521, 0.732, -0.226 ] } }, { "index": 37, "nt1": "///2/41", "nt2": "///2/481", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -129.646, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 53.777, "chi2": -157.200, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.812, "C1C1_dist": 10.713, "N1N9_dist": 8.951, "C6C8_dist": 9.858, "CNNC_torsion": 0.587, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 13.165, "planarity": 0.151, "simple_Shear": -0.173, "simple_Stretch": -0.140, "simple_Buckle": 10.252, "simple_Propeller": 8.258, "bp_simpleParams": [ -0.173, -0.140, 0.553, 10.252, 8.258, 0.246 ], "bp_params": [ -0.172, -0.142, 0.553, 10.179, 8.348, 0.246 ], "frame": { "rmsd": null, "origin": [ 241.947, 181.511, 178.128 ], "x_axis": [ 0.806, -0.233, 0.544 ], "y_axis": [ -0.239, -0.969, -0.061 ], "z_axis": [ 0.542, -0.080, -0.837 ], "quaternion": [ 0.005, 0.950, -0.124, 0.286 ] } }, { "index": 38, "nt1": "///2/44", "nt2": "///2/481", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -153.062, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 65.631, "chi2": -157.200, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 127.561, "C1C1_dist": 6.381, "N1N9_dist": 6.680, "C6C8_dist": 8.803, "CNNC_torsion": -9.326, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-O2'(hydroxyl)[2.53],N3(imino)-O2(carbonyl)[3.29]", "interBase_angle": 26.334, "planarity": 0.394, "simple_Shear": -2.814, "simple_Stretch": 2.185, "simple_Buckle": 23.767, "simple_Propeller": -11.342, "bp_simpleParams": [ -2.814, 2.185, -1.847, 23.767, -11.342, 90.325 ], "bp_params": [ -3.455, 0.869, -1.847, 26.325, -0.710, 88.801 ], "frame": { "rmsd": null, "origin": [ 240.278, 182.687, 178.294 ], "x_axis": [ 0.409, -0.843, 0.350 ], "y_axis": [ -0.666, -0.538, -0.517 ], "z_axis": [ 0.624, -0.022, -0.781 ], "quaternion": [ -0.150, 0.826, -0.457, 0.295 ] } }, { "index": 39, "nt1": "///2/44", "nt2": "///2/485", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "..H", "DSSR": "..+M", "intra_chain": true, "chi1": -153.062, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.912, "chi2": -139.674, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 15.634, "C1C1_dist": 13.708, "N1N9_dist": 10.872, "C6C8_dist": 9.513, "CNNC_torsion": -29.719, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[3.48]", "interBase_angle": 33.879, "planarity": 0.438, "simple_Shear": -7.141, "simple_Stretch": 2.621, "simple_Buckle": -28.856, "simple_Propeller": -17.752, "bp_simpleParams": [ -7.141, 2.621, 0.227, -28.856, -17.752, -177.929 ], "bp_params": [ -3.256, 6.875, 0.227, -32.977, 7.767, -177.845 ], "frame": { "rmsd": null, "origin": [ 236.728, 180.950, 176.886 ], "x_axis": [ -0.601, 0.191, -0.776 ], "y_axis": [ 0.266, 0.963, 0.031 ], "z_axis": [ 0.754, -0.188, -0.629 ], "quaternion": [ 0.428, 0.128, 0.893, -0.044 ] } }, { "index": 40, "nt1": "///2/46", "nt2": "///2/97", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "cHS", "DSSR": "cM+m", "intra_chain": true, "chi1": -153.323, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 28.300, "chi2": -159.931, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 133.788, "C1C1_dist": 7.854, "N1N9_dist": 7.610, "C6C8_dist": 7.871, "CNNC_torsion": 31.526, "hbonds_num": 2, "hbonds_desc": "N7-O2'(hydroxyl)[2.93],N6(amino)-O2(carbonyl)[2.76]", "interBase_angle": 30.701, "planarity": 0.360, "simple_Shear": 0.324, "simple_Stretch": 5.946, "simple_Buckle": -24.869, "simple_Propeller": -18.002, "bp_simpleParams": [ 0.324, 5.946, 0.259, -24.869, -18.002, 21.643 ], "bp_params": [ -5.871, 0.992, 0.259, 14.987, -26.794, 22.058 ], "frame": { "rmsd": null, "origin": [ 236.192, 176.745, 158.705 ], "x_axis": [ -0.359, -0.929, 0.087 ], "y_axis": [ 0.125, 0.045, 0.991 ], "z_axis": [ -0.925, 0.367, 0.100 ], "quaternion": [ -0.443, -0.352, 0.571, 0.595 ] } }, { "index": 41, "nt1": "///2/47", "nt2": "///2/479", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.973, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.349, "chi2": -161.380, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.296, "C1C1_dist": 10.657, "N1N9_dist": 8.913, "C6C8_dist": 9.819, "CNNC_torsion": 10.817, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 6.903, "planarity": 0.202, "simple_Shear": -0.119, "simple_Stretch": -0.252, "simple_Buckle": -6.635, "simple_Propeller": 1.907, "bp_simpleParams": [ -0.119, -0.252, -1.065, -6.635, 1.907, -0.924 ], "bp_params": [ -0.117, -0.253, -1.065, -6.650, 1.854, -0.922 ], "frame": { "rmsd": null, "origin": [ 246.517, 182.746, 173.157 ], "x_axis": [ -0.577, -0.797, 0.179 ], "y_axis": [ -0.551, 0.219, -0.805 ], "z_axis": [ 0.602, -0.563, -0.566 ], "quaternion": [ 0.138, -0.439, 0.768, -0.445 ] } }, { "index": 42, "nt1": "///2/48", "nt2": "///2/478", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.721, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.407, "chi2": -161.704, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.008, "C1C1_dist": 10.652, "N1N9_dist": 8.925, "C6C8_dist": 9.846, "CNNC_torsion": 11.459, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 6.195, "planarity": 0.190, "simple_Shear": 0.115, "simple_Stretch": -0.218, "simple_Buckle": 0.277, "simple_Propeller": 6.189, "bp_simpleParams": [ 0.115, -0.218, -0.819, 0.277, 6.189, -1.082 ], "bp_params": [ 0.113, -0.219, -0.819, 0.322, 6.187, -1.084 ], "frame": { "rmsd": null, "origin": [ 249.158, 180.346, 172.570 ], "x_axis": [ -0.812, -0.534, -0.233 ], "y_axis": [ -0.181, 0.612, -0.770 ], "z_axis": [ 0.554, -0.583, -0.594 ], "quaternion": [ 0.227, -0.206, 0.869, -0.390 ] } }, { "index": 43, "nt1": "///2/49", "nt2": "///2/477", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.865, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.752, "chi2": -168.782, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.048, "C1C1_dist": 10.627, "N1N9_dist": 8.906, "C6C8_dist": 9.869, "CNNC_torsion": 1.018, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 4.012, "planarity": 0.132, "simple_Shear": 0.179, "simple_Stretch": -0.167, "simple_Buckle": -0.027, "simple_Propeller": -4.012, "bp_simpleParams": [ 0.179, -0.167, -0.510, -0.027, -4.012, 1.791 ], "bp_params": [ 0.177, -0.169, -0.510, -0.081, -4.012, 1.790 ], "frame": { "rmsd": null, "origin": [ 249.906, 175.961, 171.927 ], "x_axis": [ -0.895, -0.128, -0.428 ], "y_axis": [ 0.212, 0.721, -0.660 ], "z_axis": [ 0.393, -0.681, -0.618 ], "quaternion": [ 0.228, 0.023, 0.899, -0.373 ] } }, { "index": 44, "nt1": "///2/50", "nt2": "///2/477", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -171.872, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.905, "chi2": -168.782, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 91.070, "C1C1_dist": 10.238, "N1N9_dist": 8.902, "C6C8_dist": 9.288, "CNNC_torsion": -86.474, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.83],N6(amino)-N3[2.99]", "interBase_angle": 2.465, "planarity": 0.195, "simple_Shear": -7.065, "simple_Stretch": 2.422, "simple_Buckle": 1.718, "simple_Propeller": 1.767, "bp_simpleParams": [ -7.065, 2.422, 0.962, 1.718, 1.767, -9.556 ], "bp_params": [ -6.649, -3.403, 0.962, -0.079, 2.463, -9.558 ], "frame": { "rmsd": null, "origin": [ 253.160, 174.858, 173.709 ], "x_axis": [ -0.932, -0.160, -0.325 ], "y_axis": [ 0.121, 0.707, -0.697 ], "z_axis": [ 0.342, -0.689, -0.640 ], "quaternion": [ 0.184, -0.011, 0.905, -0.382 ] } }, { "index": 45, "nt1": "///2/51", "nt2": "///2/472", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -175.701, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 6.041, "chi2": -159.488, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.957, "C1C1_dist": 11.959, "N1N9_dist": 9.184, "C6C8_dist": 8.118, "CNNC_torsion": 145.234, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N4(amino)[3.02]", "interBase_angle": 21.455, "planarity": 0.487, "simple_Shear": -1.791, "simple_Stretch": 1.427, "simple_Buckle": 18.732, "simple_Propeller": -10.460, "bp_simpleParams": [ -1.791, 1.427, 1.884, 18.732, -10.460, -97.756 ], "bp_params": [ -2.115, 0.878, 1.884, 20.902, -4.839, -96.856 ], "frame": { "rmsd": null, "origin": [ 252.615, 172.257, 171.238 ], "x_axis": [ 0.300, 0.732, -0.612 ], "y_axis": [ 0.845, 0.094, 0.527 ], "z_axis": [ 0.443, -0.675, -0.591 ], "quaternion": [ 0.448, 0.670, 0.588, -0.063 ] } }, { "index": 46, "nt1": "///2/51", "nt2": "///2/476", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.701, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.172, "chi2": -170.882, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.254, "C1C1_dist": 10.665, "N1N9_dist": 8.854, "C6C8_dist": 9.738, "CNNC_torsion": -8.635, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.89],O4(carbonyl)-N6(amino)[2.91]", "interBase_angle": 4.340, "planarity": 0.236, "simple_Shear": -0.101, "simple_Stretch": -0.245, "simple_Buckle": 4.243, "simple_Propeller": 0.912, "bp_simpleParams": [ -0.101, -0.245, 0.947, 4.243, 0.912, -1.934 ], "bp_params": [ -0.097, -0.246, 0.947, 4.229, 0.975, -1.932 ], "frame": { "rmsd": null, "origin": [ 253.023, 171.306, 171.811 ], "x_axis": [ -0.455, 0.494, -0.741 ], "y_axis": [ 0.837, 0.521, -0.167 ], "z_axis": [ 0.304, -0.696, -0.650 ], "quaternion": [ 0.322, 0.410, 0.810, -0.266 ] } }, { "index": 47, "nt1": "///2/51", "nt2": "///2/488", "bp": "U+U", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -175.701, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 79.563, "chi2": -146.323, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.027, "C1C1_dist": 7.725, "N1N9_dist": 7.101, "C6C8_dist": 9.440, "CNNC_torsion": 175.717, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[2.85]", "interBase_angle": 11.433, "planarity": 0.208, "simple_Shear": 6.697, "simple_Stretch": 2.289, "simple_Buckle": -6.636, "simple_Propeller": -9.310, "bp_simpleParams": [ 6.697, 2.289, 1.092, -6.636, -9.310, -151.865 ], "bp_params": [ -2.910, -6.451, 1.092, -2.260, 11.207, -151.989 ], "frame": { "rmsd": null, "origin": [ 256.183, 170.891, 173.358 ], "x_axis": [ 0.723, 0.536, -0.437 ], "y_axis": [ 0.665, -0.369, 0.649 ], "z_axis": [ 0.186, -0.760, -0.623 ], "quaternion": [ 0.427, 0.824, 0.364, -0.076 ] } }, { "index": 48, "nt1": "///2/52", "nt2": "///2/475", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.960, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.182, "chi2": -160.811, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.958, "C1C1_dist": 10.639, "N1N9_dist": 8.946, "C6C8_dist": 9.904, "CNNC_torsion": -4.695, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 7.410, "planarity": 0.092, "simple_Shear": -0.160, "simple_Stretch": -0.110, "simple_Buckle": 7.249, "simple_Propeller": -1.536, "bp_simpleParams": [ -0.160, -0.110, 0.331, 7.249, -1.536, 1.042 ], "bp_params": [ -0.159, -0.112, 0.331, 7.268, -1.447, 1.040 ], "frame": { "rmsd": null, "origin": [ 252.369, 168.603, 169.732 ], "x_axis": [ -0.057, 0.952, -0.302 ], "y_axis": [ 0.981, 0.109, 0.159 ], "z_axis": [ 0.184, -0.287, -0.940 ], "quaternion": [ 0.167, 0.666, 0.726, -0.044 ] } }, { "index": 49, "nt1": "///2/53", "nt2": "///2/474", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.428, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.914, "chi2": -178.407, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.622, "C1C1_dist": 10.651, "N1N9_dist": 8.906, "C6C8_dist": 9.846, "CNNC_torsion": -10.327, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 13.368, "planarity": 0.173, "simple_Shear": 0.235, "simple_Stretch": -0.146, "simple_Buckle": 8.927, "simple_Propeller": -9.950, "bp_simpleParams": [ 0.235, -0.146, 0.152, 8.927, -9.950, 0.670 ], "bp_params": [ 0.233, -0.150, 0.152, 8.770, -10.089, 0.671 ], "frame": { "rmsd": null, "origin": [ 251.448, 168.403, 166.208 ], "x_axis": [ 0.535, 0.831, -0.150 ], "y_axis": [ 0.829, -0.484, 0.279 ], "z_axis": [ 0.160, -0.273, -0.949 ], "quaternion": [ 0.160, 0.861, 0.482, 0.003 ] } }, { "index": 50, "nt1": "///2/55", "nt2": "///2/90", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -125.245, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 54.127, "chi2": -161.155, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 86.001, "C1C1_dist": 8.508, "N1N9_dist": 7.942, "C6C8_dist": 10.182, "CNNC_torsion": 140.563, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.41]", "interBase_angle": 39.280, "planarity": 0.527, "simple_Shear": 6.106, "simple_Stretch": 2.870, "simple_Buckle": 11.884, "simple_Propeller": -37.439, "bp_simpleParams": [ 6.106, 2.870, -0.709, 11.884, -37.439, 148.359 ], "bp_params": [ 1.870, 6.482, -0.709, 35.827, -16.103, 147.117 ], "frame": { "rmsd": null, "origin": [ 251.263, 159.870, 150.831 ], "x_axis": [ -0.609, -0.200, -0.768 ], "y_axis": [ -0.791, 0.084, 0.605 ], "z_axis": [ -0.056, 0.976, -0.209 ], "quaternion": [ 0.258, -0.359, 0.690, 0.573 ] } }, { "index": 51, "nt1": "///2/56", "nt2": "///2/89", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -149.874, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.420, "chi2": -158.565, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.560, "C1C1_dist": 11.337, "N1N9_dist": 9.707, "C6C8_dist": 10.704, "CNNC_torsion": 6.546, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.96],N1(imino)-N3[3.90],N2(amino)-O2(carbonyl)[3.73]", "interBase_angle": 6.762, "planarity": 0.326, "simple_Shear": -0.290, "simple_Stretch": 0.581, "simple_Buckle": 0.118, "simple_Propeller": -6.761, "bp_simpleParams": [ -0.290, 0.581, -1.500, 0.118, -6.761, 4.410 ], "bp_params": [ -0.304, 0.574, -1.500, 0.281, -6.756, 4.417 ], "frame": { "rmsd": null, "origin": [ 254.830, 156.866, 149.010 ], "x_axis": [ 0.722, 0.604, -0.337 ], "y_axis": [ 0.396, 0.037, 0.917 ], "z_axis": [ 0.567, -0.796, -0.213 ], "quaternion": [ 0.622, 0.689, 0.363, 0.083 ] } }, { "index": 52, "nt1": "///2/57", "nt2": "///2/88", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.801, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.461, "chi2": -159.659, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.382, "C1C1_dist": 10.852, "N1N9_dist": 9.270, "C6C8_dist": 10.153, "CNNC_torsion": 5.031, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.47],N3(imino)-O6(carbonyl)[3.45]", "interBase_angle": 12.844, "planarity": 0.295, "simple_Shear": 2.806, "simple_Stretch": 0.439, "simple_Buckle": 10.300, "simple_Propeller": -7.674, "bp_simpleParams": [ 2.806, 0.439, -1.588, 10.300, -7.674, 1.718 ], "bp_params": [ 2.819, -0.345, -1.588, 7.815, -10.193, 1.721 ], "frame": { "rmsd": null, "origin": [ 257.108, 154.399, 147.218 ], "x_axis": [ 0.814, 0.516, 0.266 ], "y_axis": [ -0.076, -0.360, 0.930 ], "z_axis": [ 0.576, -0.777, -0.254 ], "quaternion": [ 0.548, 0.779, 0.141, 0.270 ] } }, { "index": 53, "nt1": "///2/58", "nt2": "///2/62", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -102.879, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 47.837, "chi2": -173.942, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 30.162, "C1C1_dist": 11.651, "N1N9_dist": 9.396, "C6C8_dist": 8.799, "CNNC_torsion": -4.483, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O6(carbonyl)[3.50]", "interBase_angle": 9.641, "planarity": 0.125, "simple_Shear": -3.906, "simple_Stretch": 2.231, "simple_Buckle": 8.102, "simple_Propeller": 5.225, "bp_simpleParams": [ -3.906, 2.231, -0.191, 8.102, 5.225, -99.852 ], "bp_params": [ -0.119, 4.496, -0.191, 8.669, -4.219, -99.729 ], "frame": { "rmsd": null, "origin": [ 261.018, 148.857, 143.386 ], "x_axis": [ 0.258, 0.496, 0.829 ], "y_axis": [ -0.533, -0.642, 0.551 ], "z_axis": [ 0.806, -0.584, 0.098 ], "quaternion": [ 0.423, 0.671, -0.014, 0.609 ] } }, { "index": 54, "nt1": "///2/59", "nt2": "///2/61", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -157.550, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.430, "chi2": -107.889, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.264, "C1C1_dist": 7.487, "N1N9_dist": 6.334, "C6C8_dist": 6.259, "CNNC_torsion": -158.188, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N7[3.18]", "interBase_angle": 46.542, "planarity": 0.447, "simple_Shear": 7.022, "simple_Stretch": 5.932, "simple_Buckle": 41.765, "simple_Propeller": 20.540, "bp_simpleParams": [ 7.022, 5.932, -1.994, 41.765, 20.540, -85.227 ], "bp_params": [ 6.411, -6.587, -1.994, 22.858, -40.542, -87.746 ], "frame": { "rmsd": null, "origin": [ 254.617, 138.786, 142.687 ], "x_axis": [ 0.398, 0.502, 0.768 ], "y_axis": [ -0.695, -0.381, 0.609 ], "z_axis": [ 0.599, -0.776, 0.198 ], "quaternion": [ 0.551, 0.629, -0.077, 0.543 ] } }, { "index": 55, "nt1": "///2/61", "nt2": "///2/335", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -107.889, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.607, "chi2": -175.071, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 85.253, "C1C1_dist": 8.394, "N1N9_dist": 8.196, "C6C8_dist": 10.472, "CNNC_torsion": 158.555, "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.56]", "interBase_angle": 36.385, "planarity": 0.455, "simple_Shear": 7.455, "simple_Stretch": 4.030, "simple_Buckle": 31.712, "simple_Propeller": -17.839, "bp_simpleParams": [ 7.455, 4.030, -2.030, 31.712, -17.839, 166.864 ], "bp_params": [ 3.036, 7.912, -2.030, 35.629, 7.378, 166.234 ], "frame": { "rmsd": null, "origin": [ 252.903, 135.884, 138.322 ], "x_axis": [ -0.800, -0.599, 0.018 ], "y_axis": [ -0.158, 0.240, 0.958 ], "z_axis": [ -0.578, 0.764, -0.287 ], "quaternion": [ -0.195, -0.248, 0.763, 0.564 ] } }, { "index": 56, "nt1": "///2/62", "nt2": "///2/86", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.942, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.375, "chi2": -175.162, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.683, "C1C1_dist": 10.514, "N1N9_dist": 8.884, "C6C8_dist": 9.899, "CNNC_torsion": 2.517, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.67]", "interBase_angle": 3.704, "planarity": 0.043, "simple_Shear": -0.200, "simple_Stretch": -0.122, "simple_Buckle": 1.941, "simple_Propeller": 3.155, "bp_simpleParams": [ -0.200, -0.122, 0.065, 1.941, 3.155, 3.266 ], "bp_params": [ -0.198, -0.126, 0.065, 1.891, 3.185, 3.267 ], "frame": { "rmsd": null, "origin": [ 262.220, 150.235, 142.281 ], "x_axis": [ -0.268, -0.117, 0.956 ], "y_axis": [ -0.579, -0.774, -0.257 ], "z_axis": [ 0.770, -0.622, 0.139 ], "quaternion": [ 0.156, 0.585, -0.298, 0.738 ] } }, { "index": 57, "nt1": "///2/62", "nt2": "///2/171", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -173.942, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 111.927, "chi2": -131.783, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 124.414, "C1C1_dist": 6.906, "N1N9_dist": 8.302, "C6C8_dist": 10.955, "CNNC_torsion": -19.220, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N3[3.27]", "interBase_angle": 31.486, "planarity": 0.399, "simple_Shear": -0.192, "simple_Stretch": 6.785, "simple_Buckle": 22.588, "simple_Propeller": -21.935, "bp_simpleParams": [ -0.192, 6.785, 1.671, 22.588, -21.935, 129.468 ], "bp_params": [ -0.737, 6.748, 1.671, 24.288, -20.037, 129.127 ], "frame": { "rmsd": null, "origin": [ 264.081, 152.110, 139.818 ], "x_axis": [ 0.243, 0.757, 0.607 ], "y_axis": [ -0.672, -0.320, 0.668 ], "z_axis": [ 0.699, -0.570, 0.431 ], "quaternion": [ 0.582, 0.532, 0.040, 0.614 ] } }, { "index": 58, "nt1": "///2/63", "nt2": "///2/85", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.999, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.227, "chi2": -173.515, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.543, "C1C1_dist": 10.081, "N1N9_dist": 8.666, "C6C8_dist": 9.812, "CNNC_torsion": 1.751, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.76],O4(carbonyl)-N6(amino)[3.10]", "interBase_angle": 3.710, "planarity": 0.076, "simple_Shear": 0.010, "simple_Stretch": -0.119, "simple_Buckle": 2.072, "simple_Propeller": 3.078, "bp_simpleParams": [ 0.010, -0.119, 0.230, 2.072, 3.078, 8.403 ], "bp_params": [ 0.010, -0.119, 0.230, 2.059, 3.087, 8.405 ], "frame": { "rmsd": null, "origin": [ 265.728, 149.548, 144.686 ], "x_axis": [ -0.518, -0.486, 0.704 ], "y_axis": [ -0.335, -0.641, -0.690 ], "z_axis": [ 0.787, -0.593, 0.169 ], "quaternion": [ -0.049, 0.488, -0.420, 0.763 ] } }, { "index": 59, "nt1": "///2/64", "nt2": "///2/83", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -100.719, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 43.823, "chi2": -176.901, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 17.435, "C1C1_dist": 11.507, "N1N9_dist": 9.154, "C6C8_dist": 8.337, "CNNC_torsion": -159.280, "hbonds_num": 2, "hbonds_desc": "N6(amino)-OP2[2.62],N1*N7[3.04]", "interBase_angle": 31.881, "planarity": 0.378, "simple_Shear": 4.914, "simple_Stretch": 3.021, "simple_Buckle": -7.913, "simple_Propeller": 30.883, "bp_simpleParams": [ 4.914, 3.021, 0.490, -7.913, 30.883, -82.695 ], "bp_params": [ 5.632, -1.247, 0.490, 15.947, 27.606, -83.813 ], "frame": { "rmsd": null, "origin": [ 271.341, 148.055, 149.586 ], "x_axis": [ -0.773, -0.558, -0.301 ], "y_axis": [ 0.467, -0.181, -0.865 ], "z_axis": [ 0.428, -0.810, 0.401 ], "quaternion": [ -0.334, 0.042, -0.546, 0.767 ] } }, { "index": 60, "nt1": "///2/66", "nt2": "///2/82", "bp": "G-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -145.976, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 15.878, "chi2": 179.200, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 81.116, "C1C1_dist": 10.602, "N1N9_dist": 9.147, "C6C8_dist": 9.060, "CNNC_torsion": 178.597, "hbonds_num": 2, "hbonds_desc": "OP1-N2(amino)[3.34],N7-N2(amino)[3.09]", "interBase_angle": 14.788, "planarity": 0.191, "simple_Shear": -8.123, "simple_Stretch": 4.721, "simple_Buckle": -10.142, "simple_Propeller": -10.762, "bp_simpleParams": [ -8.123, 4.721, -0.038, -10.142, -10.762, -42.775 ], "bp_params": [ -7.973, -4.970, -0.038, 4.769, -13.998, -43.033 ], "frame": { "rmsd": null, "origin": [ 273.044, 145.123, 150.803 ], "x_axis": [ -0.645, -0.673, -0.363 ], "y_axis": [ 0.466, 0.031, -0.884 ], "z_axis": [ 0.606, -0.739, 0.294 ], "quaternion": [ -0.412, 0.088, -0.588, 0.691 ] } }, { "index": 61, "nt1": "///2/68", "nt2": "///2/81", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.424, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.968, "chi2": -163.316, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.782, "C1C1_dist": 10.625, "N1N9_dist": 8.903, "C6C8_dist": 9.840, "CNNC_torsion": 6.617, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.88]", "interBase_angle": 4.031, "planarity": 0.142, "simple_Shear": 0.099, "simple_Stretch": -0.134, "simple_Buckle": -3.842, "simple_Propeller": 1.220, "bp_simpleParams": [ 0.099, -0.134, -0.743, -3.842, 1.220, -0.299 ], "bp_params": [ 0.097, -0.135, -0.743, -3.824, 1.276, -0.298 ], "frame": { "rmsd": null, "origin": [ 273.228, 140.801, 152.341 ], "x_axis": [ 0.274, -0.018, -0.962 ], "y_axis": [ 0.760, 0.617, 0.205 ], "z_axis": [ 0.590, -0.787, 0.182 ], "quaternion": [ 0.720, 0.344, 0.539, -0.270 ] } }, { "index": 62, "nt1": "///2/69", "nt2": "///2/80", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.876, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.245, "chi2": -170.939, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.489, "C1C1_dist": 10.814, "N1N9_dist": 8.988, "C6C8_dist": 9.888, "CNNC_torsion": 3.589, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 4.219, "planarity": 0.057, "simple_Shear": 0.142, "simple_Stretch": -0.136, "simple_Buckle": 0.700, "simple_Propeller": 4.161, "bp_simpleParams": [ 0.142, -0.136, -0.139, 0.700, 4.161, -1.033 ], "bp_params": [ 0.140, -0.138, -0.139, 0.739, 4.154, -1.033 ], "frame": { "rmsd": null, "origin": [ 274.177, 136.915, 151.611 ], "x_axis": [ 0.575, 0.297, -0.762 ], "y_axis": [ 0.554, 0.545, 0.630 ], "z_axis": [ 0.602, -0.784, 0.149 ], "quaternion": [ 0.753, 0.469, 0.453, -0.085 ] } }, { "index": 63, "nt1": "///2/70", "nt2": "///2/79", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 173.514, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 93.912, "chi2": -179.971, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.871, "C1C1_dist": 9.946, "N1N9_dist": 8.681, "C6C8_dist": 9.117, "CNNC_torsion": 111.901, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.90],N2(amino)-N7[2.88],N3-N6(amino)[2.98]", "interBase_angle": 4.835, "planarity": 0.083, "simple_Shear": 7.360, "simple_Stretch": 2.585, "simple_Buckle": 0.776, "simple_Propeller": 4.773, "bp_simpleParams": [ 7.360, 2.585, -0.336, 0.776, 4.773, -5.145 ], "bp_params": [ 6.814, -3.797, -0.336, 4.088, 2.583, -5.143 ], "frame": { "rmsd": null, "origin": [ 275.880, 134.011, 150.585 ], "x_axis": [ 0.760, 0.639, 0.114 ], "y_axis": [ -0.158, 0.012, 0.987 ], "z_axis": [ 0.630, -0.769, 0.110 ], "quaternion": [ 0.686, 0.640, 0.188, 0.291 ] } }, { "index": 64, "nt1": "///2/86", "nt2": "///2/171", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -175.162, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 95.589, "chi2": -131.783, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 43.080, "C1C1_dist": 8.942, "N1N9_dist": 8.390, "C6C8_dist": 10.270, "CNNC_torsion": -174.785, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N1[3.01]", "interBase_angle": 35.021, "planarity": 0.463, "simple_Shear": 5.887, "simple_Stretch": 3.886, "simple_Buckle": -34.526, "simple_Propeller": 5.871, "bp_simpleParams": [ 5.887, 3.886, -1.559, -34.526, 5.871, -125.962 ], "bp_params": [ -0.915, -6.994, -1.559, 26.928, 22.391, -125.530 ], "frame": { "rmsd": null, "origin": [ 263.993, 152.070, 139.892 ], "x_axis": [ 0.282, 0.750, 0.598 ], "y_axis": [ 0.652, 0.307, -0.693 ], "z_axis": [ -0.704, 0.585, -0.402 ], "quaternion": [ 0.545, -0.587, -0.597, 0.045 ] } }, { "index": 65, "nt1": "///2/87", "nt2": "///2/500", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.623, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.718, "chi2": -75.758, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 53.243, "C1C1_dist": 10.588, "N1N9_dist": 8.856, "C6C8_dist": 9.793, "CNNC_torsion": -3.601, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 5.857, "planarity": 0.194, "simple_Shear": -0.004, "simple_Stretch": -0.171, "simple_Buckle": 5.301, "simple_Propeller": 2.491, "bp_simpleParams": [ -0.004, -0.171, 0.701, 5.301, 2.491, 0.344 ], "bp_params": [ -0.003, -0.171, 0.701, 5.288, 2.517, 0.344 ], "frame": { "rmsd": null, "origin": [ 258.714, 151.447, 144.992 ], "x_axis": [ 0.330, 0.495, 0.804 ], "y_axis": [ 0.617, 0.531, -0.581 ], "z_axis": [ -0.714, 0.688, -0.130 ], "quaternion": [ 0.658, -0.482, -0.577, -0.046 ] } }, { "index": 66, "nt1": "///2/92", "nt2": "///2/444", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 49.461, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 5.146, "chi2": -162.586, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 99.161, "C1C1_dist": 9.415, "N1N9_dist": 8.298, "C6C8_dist": 8.764, "CNNC_torsion": 160.027, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.22],N6(amino)-N3[3.24]", "interBase_angle": 39.288, "planarity": 0.470, "simple_Shear": -7.523, "simple_Stretch": 2.662, "simple_Buckle": 13.509, "simple_Propeller": 36.893, "bp_simpleParams": [ -7.523, 2.662, -0.152, 13.509, 36.893, 1.106 ], "bp_params": [ -6.691, -4.349, -0.152, -21.378, 32.963, 1.135 ], "frame": { "rmsd": null, "origin": [ 246.183, 167.007, 141.843 ], "x_axis": [ 0.100, 0.450, -0.887 ], "y_axis": [ -0.874, 0.466, 0.137 ], "z_axis": [ 0.475, 0.762, 0.440 ], "quaternion": [ 0.708, -0.220, 0.481, 0.467 ] } }, { "index": 67, "nt1": "///2/95", "nt2": "///2/435", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.151, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.954, "chi2": -128.315, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 43.666, "C1C1_dist": 12.768, "N1N9_dist": 10.646, "C6C8_dist": 10.946, "CNNC_torsion": -2.815, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[2.61],N1(imino)-N1[2.81]", "interBase_angle": 17.906, "planarity": 0.266, "simple_Shear": -0.004, "simple_Stretch": 1.338, "simple_Buckle": -15.065, "simple_Propeller": -9.680, "bp_simpleParams": [ -0.004, 1.338, -0.573, -15.065, -9.680, -20.888 ], "bp_params": [ 0.004, 1.338, -0.573, -15.140, -9.562, -20.782 ], "frame": { "rmsd": null, "origin": [ 241.270, 171.079, 158.734 ], "x_axis": [ -0.329, -0.318, -0.889 ], "y_axis": [ -0.253, -0.878, 0.407 ], "z_axis": [ -0.910, 0.359, 0.208 ], "quaternion": [ -0.021, -0.579, 0.246, 0.777 ] } }, { "index": 68, "nt1": "///2/96", "nt2": "///2/434", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.037, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.127, "chi2": -147.915, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.358, "C1C1_dist": 11.357, "N1N9_dist": 9.468, "C6C8_dist": 10.226, "CNNC_torsion": 6.897, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.65],N3-N1(imino)[3.47],N4(amino)-O6(carbonyl)[3.17]", "interBase_angle": 11.124, "planarity": 0.308, "simple_Shear": 0.015, "simple_Stretch": 0.228, "simple_Buckle": -11.120, "simple_Propeller": 0.306, "bp_simpleParams": [ 0.015, 0.228, -0.932, -11.120, 0.306, -7.554 ], "bp_params": [ 0.015, 0.228, -0.932, -11.121, 0.282, -7.518 ], "frame": { "rmsd": null, "origin": [ 237.988, 173.286, 158.898 ], "x_axis": [ -0.356, -0.734, -0.578 ], "y_axis": [ 0.030, -0.627, 0.778 ], "z_axis": [ -0.934, 0.260, 0.245 ], "quaternion": [ -0.256, -0.506, 0.348, 0.746 ] } }, { "index": 69, "nt1": "///2/97", "nt2": "///2/433", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.931, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.160, "chi2": -154.168, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.202, "C1C1_dist": 10.664, "N1N9_dist": 8.892, "C6C8_dist": 9.805, "CNNC_torsion": 6.259, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 3.700, "planarity": 0.179, "simple_Shear": -0.093, "simple_Stretch": -0.178, "simple_Buckle": 1.535, "simple_Propeller": 3.366, "bp_simpleParams": [ -0.093, -0.178, -0.860, 1.535, 3.366, -1.261 ], "bp_params": [ -0.091, -0.179, -0.860, 1.486, 3.388, -1.261 ], "frame": { "rmsd": null, "origin": [ 234.798, 173.962, 158.649 ], "x_axis": [ -0.209, -0.970, -0.122 ], "y_axis": [ 0.232, -0.170, 0.958 ], "z_axis": [ -0.950, 0.172, 0.261 ], "quaternion": [ -0.470, -0.418, 0.441, 0.640 ] } }, { "index": 70, "nt1": "///2/98", "nt2": "///2/99", "bp": "C+A", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -119.197, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 137.346, "chi2": -173.304, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.147, "C1C1_dist": 6.440, "N1N9_dist": 6.343, "C6C8_dist": 6.143, "CNNC_torsion": 38.866, "hbonds_num": 2, "hbonds_desc": "O4'*N7[3.34],O2(carbonyl)-N6(amino)[2.96]", "interBase_angle": 29.636, "planarity": 0.410, "simple_Shear": 0.168, "simple_Stretch": 6.607, "simple_Buckle": -29.619, "simple_Propeller": -1.030, "bp_simpleParams": [ 0.168, 6.607, 0.700, -29.619, -1.030, 5.182 ], "bp_params": [ 6.605, -0.219, 0.700, -0.774, 29.626, 5.360 ], "frame": { "rmsd": null, "origin": [ 232.800, 176.951, 157.464 ], "x_axis": [ -0.215, -0.905, 0.367 ], "y_axis": [ 0.080, 0.358, 0.930 ], "z_axis": [ -0.973, 0.230, -0.005 ], "quaternion": [ 0.533, 0.328, -0.628, -0.462 ] } }, { "index": 71, "nt1": "///2/98", "nt2": "///2/432", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -119.197, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.884, "chi2": -168.524, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.050, "C1C1_dist": 11.291, "N1N9_dist": 9.519, "C6C8_dist": 10.382, "CNNC_torsion": -4.412, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.46],N3-N1(imino)[3.44],N4(amino)-O6(carbonyl)[3.32]", "interBase_angle": 17.302, "planarity": 0.188, "simple_Shear": -0.035, "simple_Stretch": 0.399, "simple_Buckle": 12.008, "simple_Propeller": -12.457, "bp_simpleParams": [ -0.035, 0.399, -0.572, 12.008, -12.457, -2.039 ], "bp_params": [ -0.040, 0.398, -0.572, 12.174, -12.294, -2.040 ], "frame": { "rmsd": null, "origin": [ 231.427, 173.884, 158.470 ], "x_axis": [ 0.152, -0.905, 0.397 ], "y_axis": [ 0.188, 0.421, 0.888 ], "z_axis": [ -0.970, -0.060, 0.234 ], "quaternion": [ 0.672, 0.353, -0.509, -0.407 ] } }, { "index": 72, "nt1": "///2/99", "nt2": "///2/433", "bp": "A-A", "name": "--", "Saenger": "--", "LW": ".WS", "DSSR": ".W-m", "intra_chain": true, "chi1": -173.304, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 28.952, "chi2": -154.168, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 104.925, "C1C1_dist": 9.451, "N1N9_dist": 8.590, "C6C8_dist": 9.618, "CNNC_torsion": -43.369, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[2.69],N1-O2'(hydroxyl)[3.69]", "interBase_angle": 26.665, "planarity": 0.459, "simple_Shear": -5.730, "simple_Stretch": 1.892, "simple_Buckle": 5.376, "simple_Propeller": -26.118, "bp_simpleParams": [ -5.730, 1.892, 2.263, 5.376, -26.118, 22.982 ], "bp_params": [ -5.676, -2.046, 2.263, 20.288, -17.305, 22.894 ], "frame": { "rmsd": null, "origin": [ 234.131, 176.938, 157.599 ], "x_axis": [ -0.323, -0.939, 0.116 ], "y_axis": [ 0.122, 0.081, 0.989 ], "z_axis": [ -0.939, 0.333, 0.088 ], "quaternion": [ -0.460, -0.356, 0.573, 0.577 ] } }, { "index": 73, "nt1": "///2/100", "nt2": "///2/432", "bp": "U-G", "name": "--", "Saenger": "--", "LW": ".W.", "DSSR": ".W-.", "intra_chain": true, "chi1": 178.288, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.391, "chi2": -168.524, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 98.223, "C1C1_dist": 11.860, "N1N9_dist": 10.808, "C6C8_dist": 11.948, "CNNC_torsion": -65.807, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N2(amino)[3.52]", "interBase_angle": 42.277, "planarity": 0.547, "simple_Shear": -5.877, "simple_Stretch": 4.019, "simple_Buckle": -24.048, "simple_Propeller": -34.771, "bp_simpleParams": [ -5.877, 4.019, 1.387, -24.048, -34.771, 18.828 ], "bp_params": [ -7.112, -0.346, 1.387, 2.167, -42.221, 20.153 ], "frame": { "rmsd": null, "origin": [ 230.578, 176.574, 156.138 ], "x_axis": [ -0.049, -0.785, 0.617 ], "y_axis": [ 0.216, 0.595, 0.774 ], "z_axis": [ -0.975, 0.172, 0.141 ], "quaternion": [ 0.649, 0.232, -0.613, -0.386 ] } }, { "index": 74, "nt1": "///2/102", "nt2": "///2/406", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -76.021, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 27.233, "chi2": -161.864, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.468, "C1C1_dist": 9.486, "N1N9_dist": 7.161, "C6C8_dist": 6.314, "CNNC_torsion": 148.352, "hbonds_num": 1, "hbonds_desc": "N7-N3(imino)[3.17]", "interBase_angle": 22.762, "planarity": 0.289, "simple_Shear": -4.896, "simple_Stretch": 2.243, "simple_Buckle": 19.562, "simple_Propeller": -11.639, "bp_simpleParams": [ -4.896, 2.243, 0.486, 19.562, -11.639, -99.545 ], "bp_params": [ -4.838, -2.364, 0.486, 21.380, 7.810, -98.685 ], "frame": { "rmsd": null, "origin": [ 220.309, 184.856, 158.160 ], "x_axis": [ 0.541, 0.838, 0.068 ], "y_axis": [ 0.040, 0.055, -0.998 ], "z_axis": [ -0.840, 0.543, -0.004 ], "quaternion": [ 0.631, -0.610, -0.360, 0.316 ] } }, { "index": 75, "nt1": "///2/104", "nt2": "///2/356", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": 172.680, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 14.396, "chi2": 47.034, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 33.221, "C1C1_dist": 10.461, "N1N9_dist": 7.856, "C6C8_dist": 5.590, "CNNC_torsion": 132.243, "hbonds_num": 1, "hbonds_desc": "N7-N4(amino)[3.46]", "interBase_angle": 38.698, "planarity": 0.477, "simple_Shear": -8.670, "simple_Stretch": 2.113, "simple_Buckle": 15.878, "simple_Propeller": -35.290, "bp_simpleParams": [ -8.670, 2.113, 0.503, 15.878, -35.290, -165.695 ], "bp_params": [ -7.249, 5.204, 0.503, 1.141, -38.681, -166.494 ], "frame": { "rmsd": null, "origin": [ 218.787, 183.036, 152.818 ], "x_axis": [ -0.222, 0.653, -0.724 ], "y_axis": [ 0.940, -0.053, -0.337 ], "z_axis": [ -0.258, -0.756, -0.602 ], "quaternion": [ 0.175, 0.598, 0.665, -0.410 ] } }, { "index": 76, "nt1": "///2/106", "nt2": "///2/355", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.518, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.998, "chi2": -157.197, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.200, "C1C1_dist": 10.653, "N1N9_dist": 8.920, "C6C8_dist": 9.858, "CNNC_torsion": 4.362, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 1.095, "planarity": 0.141, "simple_Shear": 0.167, "simple_Stretch": -0.185, "simple_Buckle": -0.738, "simple_Propeller": -0.808, "bp_simpleParams": [ 0.167, -0.185, -0.594, -0.738, -0.808, 0.457 ], "bp_params": [ 0.165, -0.187, -0.594, -0.748, -0.799, 0.457 ], "frame": { "rmsd": null, "origin": [ 216.200, 175.315, 150.081 ], "x_axis": [ 0.217, 0.341, -0.915 ], "y_axis": [ 0.948, -0.296, 0.115 ], "z_axis": [ -0.232, -0.892, -0.387 ], "quaternion": [ 0.365, 0.689, 0.467, -0.416 ] } }, { "index": 77, "nt1": "///2/107", "nt2": "///2/354", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.308, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.278, "chi2": -158.292, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.987, "C1C1_dist": 10.590, "N1N9_dist": 8.879, "C6C8_dist": 9.841, "CNNC_torsion": 0.743, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.84]", "interBase_angle": 1.439, "planarity": 0.044, "simple_Shear": 0.038, "simple_Stretch": -0.104, "simple_Buckle": -0.688, "simple_Propeller": -1.264, "bp_simpleParams": [ 0.038, -0.104, -0.219, -0.688, -1.264, 0.982 ], "bp_params": [ 0.037, -0.104, -0.219, -0.700, -1.258, 0.982 ], "frame": { "rmsd": null, "origin": [ 214.362, 172.678, 148.301 ], "x_axis": [ 0.702, 0.327, -0.633 ], "y_axis": [ 0.707, -0.426, 0.564 ], "z_axis": [ -0.086, -0.844, -0.530 ], "quaternion": [ 0.432, 0.815, 0.317, -0.221 ] } }, { "index": 78, "nt1": "///2/108", "nt2": "///2/353", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.963, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.800, "chi2": -161.834, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.977, "C1C1_dist": 10.718, "N1N9_dist": 8.916, "C6C8_dist": 9.799, "CNNC_torsion": 14.010, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 16.938, "planarity": 0.244, "simple_Shear": -0.180, "simple_Stretch": -0.202, "simple_Buckle": 9.244, "simple_Propeller": 14.193, "bp_simpleParams": [ -0.180, -0.202, -0.461, 9.244, 14.193, -2.414 ], "bp_params": [ -0.178, -0.203, -0.461, 9.099, 14.286, -2.425 ], "frame": { "rmsd": null, "origin": [ 213.391, 170.496, 145.800 ], "x_axis": [ 0.955, 0.248, -0.164 ], "y_axis": [ 0.280, -0.566, 0.776 ], "z_axis": [ 0.099, -0.787, -0.609 ], "quaternion": [ 0.442, 0.885, 0.149, -0.018 ] } }, { "index": 79, "nt1": "///2/108", "nt2": "///2/854", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -162.963, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 92.019, "chi2": -175.549, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.757, "C1C1_dist": 7.881, "N1N9_dist": 7.448, "C6C8_dist": 9.367, "CNNC_torsion": 173.899, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.84],N2(amino)-N3[3.07]", "interBase_angle": 52.163, "planarity": 0.719, "simple_Shear": 6.196, "simple_Stretch": 3.560, "simple_Buckle": -51.549, "simple_Propeller": -7.982, "bp_simpleParams": [ 6.196, 3.560, -2.402, -51.549, -7.982, -130.891 ], "bp_params": [ -1.803, -6.915, -2.402, 30.865, 42.051, -132.121 ], "frame": { "rmsd": null, "origin": [ 211.068, 167.998, 147.313 ], "x_axis": [ 0.652, -0.670, 0.355 ], "y_axis": [ -0.716, -0.391, 0.578 ], "z_axis": [ -0.248, -0.631, -0.735 ], "quaternion": [ 0.363, 0.833, -0.416, 0.032 ] } }, { "index": 80, "nt1": "///2/109", "nt2": "///2/352", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -146.459, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 69.099, "chi2": -157.874, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.230, "C1C1_dist": 9.476, "N1N9_dist": 7.911, "C6C8_dist": 9.003, "CNNC_torsion": -0.342, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N3(imino)[3.95],N3(imino)-O4(carbonyl)[3.41]", "interBase_angle": 18.461, "planarity": 0.320, "simple_Shear": 2.240, "simple_Stretch": -0.933, "simple_Buckle": 12.435, "simple_Propeller": -13.645, "bp_simpleParams": [ 2.240, -0.933, -1.454, 12.435, -13.645, 5.583 ], "bp_params": [ 1.984, -1.397, -1.454, 9.167, -16.025, 5.620 ], "frame": { "rmsd": null, "origin": [ 215.043, 168.772, 142.997 ], "x_axis": [ 0.835, 0.001, 0.550 ], "y_axis": [ -0.323, -0.808, 0.493 ], "z_axis": [ 0.444, -0.589, -0.675 ], "quaternion": [ 0.297, 0.911, -0.089, 0.273 ] } }, { "index": 81, "nt1": "///2/110", "nt2": "///2/351", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.788, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.012, "chi2": 172.650, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.143, "C1C1_dist": 10.146, "N1N9_dist": 8.726, "C6C8_dist": 9.944, "CNNC_torsion": -13.457, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.80],O2(carbonyl)-N2(amino)[2.83],N3(imino)-O6(carbonyl)[3.39]", "interBase_angle": 19.330, "planarity": 0.254, "simple_Shear": 1.767, "simple_Stretch": 0.178, "simple_Buckle": 7.102, "simple_Propeller": -17.978, "bp_simpleParams": [ 1.767, 0.178, -0.274, 7.102, -17.978, 15.263 ], "bp_params": [ 1.772, -0.124, -0.274, 3.907, -18.931, 15.463 ], "frame": { "rmsd": null, "origin": [ 218.784, 167.784, 140.693 ], "x_axis": [ 0.531, -0.405, 0.744 ], "y_axis": [ -0.691, -0.715, 0.105 ], "z_axis": [ 0.490, -0.570, -0.660 ], "quaternion": [ 0.198, 0.852, -0.321, 0.362 ] } }, { "index": 82, "nt1": "///2/111", "nt2": "///2/350", "bp": "A-C", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -142.132, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 72.388, "chi2": -151.245, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.904, "C1C1_dist": 10.849, "N1N9_dist": 9.396, "C6C8_dist": 10.478, "CNNC_torsion": 3.420, "hbonds_num": 1, "hbonds_desc": "N1-N4(amino)[3.00]", "interBase_angle": 17.050, "planarity": 0.218, "simple_Shear": 2.228, "simple_Stretch": 0.845, "simple_Buckle": -13.671, "simple_Propeller": -10.189, "bp_simpleParams": [ 2.228, 0.845, -1.032, -13.671, -10.189, 9.686 ], "bp_params": [ 2.364, 0.294, -1.032, -15.699, -6.652, 9.613 ], "frame": { "rmsd": null, "origin": [ 222.227, 167.219, 138.284 ], "x_axis": [ -0.120, -0.481, 0.869 ], "y_axis": [ -0.656, -0.618, -0.433 ], "z_axis": [ 0.745, -0.622, -0.241 ], "quaternion": [ 0.072, 0.660, -0.431, 0.612 ] } }, { "index": 83, "nt1": "///2/112", "nt2": "///2/349", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -145.943, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.333, "chi2": -149.374, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.006, "C1C1_dist": 10.362, "N1N9_dist": 8.718, "C6C8_dist": 9.691, "CNNC_torsion": 6.222, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 5.458, "planarity": 0.286, "simple_Shear": -0.029, "simple_Stretch": -0.331, "simple_Buckle": -3.880, "simple_Propeller": -3.838, "bp_simpleParams": [ -0.029, -0.331, -1.188, -3.880, -3.838, 1.982 ], "bp_params": [ -0.027, -0.332, -1.188, -3.850, -3.868, 1.982 ], "frame": { "rmsd": null, "origin": [ 225.438, 165.432, 137.487 ], "x_axis": [ -0.320, -0.583, 0.747 ], "y_axis": [ -0.596, -0.489, -0.637 ], "z_axis": [ 0.737, -0.649, -0.190 ], "quaternion": [ 0.005, 0.583, -0.505, 0.636 ] } }, { "index": 84, "nt1": "///2/113", "nt2": "///2/290", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -112.155, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 17.412, "chi2": -157.107, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 104.470, "C1C1_dist": 9.627, "N1N9_dist": 8.791, "C6C8_dist": 10.035, "CNNC_torsion": -157.409, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O2(carbonyl)[3.06]", "interBase_angle": 28.040, "planarity": 0.400, "simple_Shear": 3.259, "simple_Stretch": 3.692, "simple_Buckle": -17.016, "simple_Propeller": 22.286, "bp_simpleParams": [ 3.259, 3.692, 1.095, -17.016, 22.286, 92.868 ], "bp_params": [ -1.855, 4.562, 1.095, -27.545, -5.245, 91.258 ], "frame": { "rmsd": null, "origin": [ 214.564, 158.131, 121.130 ], "x_axis": [ -0.485, -0.870, -0.092 ], "y_axis": [ 0.284, -0.256, 0.924 ], "z_axis": [ -0.827, 0.422, 0.372 ], "quaternion": [ -0.397, -0.316, 0.463, 0.727 ] } }, { "index": 85, "nt1": "///2/113", "nt2": "///2/292", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW-M", "intra_chain": true, "chi1": -112.155, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 60.331, "chi2": -111.560, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.993, "C1C1_dist": 9.138, "N1N9_dist": 7.281, "C6C8_dist": 7.041, "CNNC_torsion": 38.555, "hbonds_num": 1, "hbonds_desc": "N1(imino)-N7[2.55]", "interBase_angle": 70.551, "planarity": 1.135, "simple_Shear": 3.880, "simple_Stretch": -2.004, "simple_Buckle": -15.483, "simple_Propeller": -68.831, "bp_simpleParams": [ 3.880, -2.004, -3.766, -15.483, -68.831, -9.608 ], "bp_params": [ 2.285, -3.721, -3.766, -47.499, -52.165, -9.985 ], "frame": { "rmsd": null, "origin": [ 213.859, 160.072, 125.594 ], "x_axis": [ 0.399, -0.858, 0.325 ], "y_axis": [ 0.368, 0.474, 0.800 ], "z_axis": [ -0.840, -0.199, 0.505 ], "quaternion": [ 0.771, 0.324, -0.378, -0.398 ] } }, { "index": 86, "nt1": "///2/114", "nt2": "///2/350", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -108.721, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 53.761, "chi2": -151.245, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.439, "C1C1_dist": 9.678, "N1N9_dist": 8.958, "C6C8_dist": 10.607, "CNNC_torsion": 47.511, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O2(carbonyl)[3.18]", "interBase_angle": 40.608, "planarity": 0.667, "simple_Shear": -3.332, "simple_Stretch": 1.623, "simple_Buckle": 20.245, "simple_Propeller": 35.201, "bp_simpleParams": [ -3.332, 1.623, -2.803, 20.245, 35.201, 36.187 ], "bp_params": [ -3.683, 0.412, -2.803, 6.889, 40.019, 38.289 ], "frame": { "rmsd": null, "origin": [ 222.820, 169.117, 135.474 ], "x_axis": [ -0.564, -0.384, 0.732 ], "y_axis": [ -0.445, -0.605, -0.660 ], "z_axis": [ 0.696, -0.698, 0.170 ], "quaternion": [ 0.020, 0.467, -0.444, 0.765 ] } }, { "index": 87, "nt1": "///2/115", "nt2": "///2/348", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.308, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.739, "chi2": -166.935, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.013, "C1C1_dist": 10.892, "N1N9_dist": 9.372, "C6C8_dist": 10.516, "CNNC_torsion": 14.322, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N1[3.59]", "interBase_angle": 12.783, "planarity": 0.218, "simple_Shear": 0.662, "simple_Stretch": 0.592, "simple_Buckle": 1.864, "simple_Propeller": 12.646, "bp_simpleParams": [ 0.662, 0.592, -0.876, 1.864, 12.646, 8.500 ], "bp_params": [ 0.697, 0.549, -0.876, 2.639, 12.507, 8.549 ], "frame": { "rmsd": null, "origin": [ 228.767, 164.074, 136.420 ], "x_axis": [ -0.794, -0.607, 0.023 ], "y_axis": [ -0.130, 0.134, -0.982 ], "z_axis": [ 0.594, -0.783, -0.185 ], "quaternion": [ 0.196, -0.254, 0.727, -0.607 ] } }, { "index": 88, "nt1": "///2/116", "nt2": "///2/347", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.420, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.844, "chi2": 174.924, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.280, "C1C1_dist": 10.423, "N1N9_dist": 8.560, "C6C8_dist": 9.318, "CNNC_torsion": 9.496, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.67],O2(carbonyl)-N2(amino)[3.16],N3(imino)-O6(carbonyl)[2.53]", "interBase_angle": 13.647, "planarity": 0.183, "simple_Shear": 1.692, "simple_Stretch": -0.492, "simple_Buckle": 9.680, "simple_Propeller": 9.619, "bp_simpleParams": [ 1.692, -0.492, -0.541, 9.680, 9.619, -7.718 ], "bp_params": [ 1.584, -0.771, -0.541, 11.168, 7.843, -7.700 ], "frame": { "rmsd": null, "origin": [ 231.074, 161.430, 137.433 ], "x_axis": [ -0.746, -0.393, -0.537 ], "y_axis": [ 0.356, 0.447, -0.821 ], "z_axis": [ 0.562, -0.804, -0.194 ], "quaternion": [ 0.356, -0.012, 0.773, -0.526 ] } }, { "index": 89, "nt1": "///2/117", "nt2": "///2/346", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "intra_chain": true, "chi1": -160.782, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 102.355, "chi2": -163.449, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.858, "C1C1_dist": 9.282, "N1N9_dist": 8.296, "C6C8_dist": 9.391, "CNNC_torsion": -3.761, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[2.39]", "interBase_angle": 16.166, "planarity": 0.161, "simple_Shear": 6.091, "simple_Stretch": 1.626, "simple_Buckle": 13.301, "simple_Propeller": 9.189, "bp_simpleParams": [ 6.091, 1.626, -0.360, 13.301, 9.189, 20.541 ], "bp_params": [ 5.796, -2.479, -0.360, 16.136, -0.995, 20.343 ], "frame": { "rmsd": null, "origin": [ 232.170, 157.825, 137.568 ], "x_axis": [ -0.452, -0.055, -0.890 ], "y_axis": [ 0.716, 0.573, -0.399 ], "z_axis": [ 0.533, -0.817, -0.219 ], "quaternion": [ 0.475, 0.220, 0.749, -0.406 ] } }, { "index": 90, "nt1": "///2/119", "nt2": "///2/345", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.210, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.336, "chi2": -171.253, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 72.446, "C1C1_dist": 9.191, "N1N9_dist": 7.628, "C6C8_dist": 8.618, "CNNC_torsion": -7.142, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N3(imino)[3.19]", "interBase_angle": 27.902, "planarity": 0.437, "simple_Shear": -2.833, "simple_Stretch": -1.113, "simple_Buckle": 25.677, "simple_Propeller": 10.919, "bp_simpleParams": [ -2.833, -1.113, 1.966, 25.677, 10.919, 6.342 ], "bp_params": [ -2.423, -1.842, 1.966, 21.825, 17.384, 6.302 ], "frame": { "rmsd": null, "origin": [ 234.924, 153.390, 139.302 ], "x_axis": [ -0.262, 0.395, -0.880 ], "y_axis": [ 0.869, 0.493, -0.037 ], "z_axis": [ 0.420, -0.775, -0.473 ], "quaternion": [ 0.435, 0.423, 0.746, -0.272 ] } }, { "index": 91, "nt1": "///2/120", "nt2": "///2/344", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.957, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.514, "chi2": -159.019, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 74.405, "C1C1_dist": 9.638, "N1N9_dist": 8.128, "C6C8_dist": 9.284, "CNNC_torsion": -9.469, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O2(carbonyl)[3.70],O4(carbonyl)-N3(imino)[3.41]", "interBase_angle": 12.351, "planarity": 0.163, "simple_Shear": -2.996, "simple_Stretch": -0.344, "simple_Buckle": -6.823, "simple_Propeller": -10.295, "bp_simpleParams": [ -2.996, -0.344, -0.258, -6.823, -10.295, 6.396 ], "bp_params": [ -2.761, -1.215, -0.258, -3.465, -11.855, 6.427 ], "frame": { "rmsd": null, "origin": [ 234.429, 150.034, 136.791 ], "x_axis": [ 0.266, 0.771, -0.579 ], "y_axis": [ 0.926, -0.038, 0.375 ], "z_axis": [ 0.267, -0.636, -0.724 ], "quaternion": [ 0.355, 0.712, 0.596, -0.109 ] } }, { "index": 92, "nt1": "///2/121", "nt2": "///2/343", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.706, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.297, "chi2": -165.586, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.686, "C1C1_dist": 10.384, "N1N9_dist": 8.796, "C6C8_dist": 9.829, "CNNC_torsion": -0.428, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.83],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 4.916, "planarity": 0.131, "simple_Shear": -0.064, "simple_Stretch": -0.129, "simple_Buckle": -1.715, "simple_Propeller": -4.607, "bp_simpleParams": [ -0.064, -0.129, -0.511, -1.715, -4.607, 3.876 ], "bp_params": [ -0.063, -0.130, -0.511, -1.663, -4.626, 3.879 ], "frame": { "rmsd": null, "origin": [ 234.339, 148.109, 133.889 ], "x_axis": [ 0.815, 0.568, -0.116 ], "y_axis": [ 0.482, -0.553, 0.680 ], "z_axis": [ 0.322, -0.610, -0.724 ], "quaternion": [ 0.367, 0.879, 0.298, 0.059 ] } }, { "index": 93, "nt1": "///2/122", "nt2": "///2/342", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.992, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.989, "chi2": -159.500, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.592, "C1C1_dist": 10.563, "N1N9_dist": 9.081, "C6C8_dist": 10.271, "CNNC_torsion": 13.267, "hbonds_num": 4, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.70],N1(imino)-N3[3.19],N2(amino)-O2(carbonyl)[2.60],N2(amino)-N3[3.09]", "interBase_angle": 14.405, "planarity": 0.193, "simple_Shear": 0.420, "simple_Stretch": 0.318, "simple_Buckle": -8.471, "simple_Propeller": 11.651, "bp_simpleParams": [ 0.420, 0.318, -0.567, -8.471, 11.651, 11.365 ], "bp_params": [ 0.434, 0.299, -0.567, -7.939, 12.019, 11.401 ], "frame": { "rmsd": null, "origin": [ 235.569, 147.083, 130.593 ], "x_axis": [ 0.797, 0.389, 0.463 ], "y_axis": [ 0.019, -0.782, 0.623 ], "z_axis": [ 0.604, -0.487, -0.631 ], "quaternion": [ 0.310, 0.896, 0.114, 0.298 ] } }, { "index": 94, "nt1": "///2/123", "nt2": "///2/341", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.705, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.263, "chi2": -173.326, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.495, "C1C1_dist": 10.624, "N1N9_dist": 8.860, "C6C8_dist": 9.785, "CNNC_torsion": 4.665, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 8.294, "planarity": 0.210, "simple_Shear": -0.169, "simple_Stretch": -0.278, "simple_Buckle": -6.698, "simple_Propeller": -4.892, "bp_simpleParams": [ -0.169, -0.278, -1.050, -6.698, -4.892, 1.076 ], "bp_params": [ -0.166, -0.279, -1.050, -6.646, -4.962, 1.075 ], "frame": { "rmsd": null, "origin": [ 237.900, 146.930, 127.751 ], "x_axis": [ 0.529, 0.041, 0.848 ], "y_axis": [ -0.315, -0.918, 0.241 ], "z_axis": [ 0.788, -0.395, -0.472 ], "quaternion": [ 0.186, 0.854, -0.080, 0.479 ] } }, { "index": 95, "nt1": "///2/124", "nt2": "///2/340", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.952, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 86.726, "chi2": -156.698, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.728, "C1C1_dist": 10.891, "N1N9_dist": 9.501, "C6C8_dist": 10.423, "CNNC_torsion": 14.801, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.58]", "interBase_angle": 4.806, "planarity": 0.153, "simple_Shear": 5.397, "simple_Stretch": 1.840, "simple_Buckle": -3.369, "simple_Propeller": -3.427, "bp_simpleParams": [ 5.397, 1.840, -0.893, -3.369, -3.427, 2.278 ], "bp_params": [ 5.546, -1.327, -0.893, -4.679, -1.098, 2.276 ], "frame": { "rmsd": null, "origin": [ 241.196, 146.502, 125.487 ], "x_axis": [ 0.128, -0.619, 0.775 ], "y_axis": [ -0.602, -0.669, -0.435 ], "z_axis": [ 0.788, -0.411, -0.459 ], "quaternion": [ -0.008, 0.751, -0.407, 0.520 ] } }, { "index": 96, "nt1": "///2/126", "nt2": "///2/180", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -58.930, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 74.818, "chi2": -178.474, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 72.567, "C1C1_dist": 8.299, "N1N9_dist": 7.979, "C6C8_dist": 10.249, "CNNC_torsion": -165.354, "hbonds_num": 3, "hbonds_desc": "N2(amino)-O2'(hydroxyl)[2.92],N2(amino)-N3[2.55],N3-N2(amino)[3.21]", "interBase_angle": 48.950, "planarity": 0.750, "simple_Shear": 6.928, "simple_Stretch": 4.270, "simple_Buckle": 41.884, "simple_Propeller": 25.335, "bp_simpleParams": [ 6.928, 4.270, 1.159, 41.884, 25.335, -177.392 ], "bp_params": [ -2.316, -7.802, 1.159, -14.961, -46.608, -177.581 ], "frame": { "rmsd": null, "origin": [ 251.513, 137.091, 115.385 ], "x_axis": [ -0.850, 0.381, 0.363 ], "y_axis": [ 0.302, 0.918, -0.255 ], "z_axis": [ -0.431, -0.107, -0.896 ], "quaternion": [ -0.207, 0.178, 0.957, -0.095 ] } }, { "index": 97, "nt1": "///2/128", "nt2": "///2/311", "bp": "U+C", "name": "--", "Saenger": "--", "LW": "tW.", "DSSR": "tW+.", "intra_chain": true, "chi1": -142.266, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 28.642, "chi2": -157.879, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 77.658, "C1C1_dist": 8.128, "N1N9_dist": 6.867, "C6C8_dist": 8.639, "CNNC_torsion": 175.160, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O2(carbonyl)[2.61],O4(carbonyl)-O2'(hydroxyl)[3.28]", "interBase_angle": 20.792, "planarity": 0.205, "simple_Shear": 4.540, "simple_Stretch": 0.862, "simple_Buckle": -20.792, "simple_Propeller": 0.050, "bp_simpleParams": [ 4.540, 0.862, 0.547, -20.792, 0.050, 128.178 ], "bp_params": [ 1.490, 4.374, 0.547, -10.301, -18.062, 128.553 ], "frame": { "rmsd": null, "origin": [ 248.661, 148.483, 114.231 ], "x_axis": [ 0.354, 0.109, 0.929 ], "y_axis": [ -0.564, -0.767, 0.305 ], "z_axis": [ 0.746, -0.632, -0.210 ], "quaternion": [ 0.307, 0.763, -0.149, 0.548 ] } }, { "index": 98, "nt1": "///2/129", "nt2": "///2/183", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.637, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 55.938, "chi2": 127.513, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 50.858, "C1C1_dist": 10.675, "N1N9_dist": 8.923, "C6C8_dist": 9.884, "CNNC_torsion": -2.793, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.69],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 4.565, "planarity": 0.113, "simple_Shear": 0.194, "simple_Stretch": -0.136, "simple_Buckle": 4.478, "simple_Propeller": 0.888, "bp_simpleParams": [ 0.194, -0.136, 0.260, 4.478, 0.888, 2.490 ], "bp_params": [ 0.192, -0.139, 0.260, 4.490, 0.826, 2.488 ], "frame": { "rmsd": null, "origin": [ 245.884, 138.571, 104.858 ], "x_axis": [ -0.651, -0.076, 0.755 ], "y_axis": [ 0.147, 0.964, 0.223 ], "z_axis": [ -0.745, 0.257, -0.616 ], "quaternion": [ -0.417, 0.020, 0.899, 0.134 ] } }, { "index": 99, "nt1": "///2/130", "nt2": "///2/182", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 76.798, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 48.589, "chi2": -129.631, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 52.380, "C1C1_dist": 10.841, "N1N9_dist": 8.973, "C6C8_dist": 9.844, "CNNC_torsion": 6.762, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 2.041, "planarity": 0.138, "simple_Shear": -0.174, "simple_Stretch": -0.200, "simple_Buckle": -2.011, "simple_Propeller": 0.350, "bp_simpleParams": [ -0.174, -0.200, -0.679, -2.011, 0.350, -1.573 ], "bp_params": [ -0.171, -0.202, -0.679, -2.015, 0.326, -1.573 ], "frame": { "rmsd": null, "origin": [ 249.495, 142.554, 107.078 ], "x_axis": [ -0.582, 0.209, 0.786 ], "y_axis": [ 0.215, 0.972, -0.099 ], "z_axis": [ -0.784, 0.112, -0.610 ], "quaternion": [ -0.441, 0.119, 0.889, 0.004 ] } }, { "index": 100, "nt1": "///2/141", "nt2": "///2/177", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -130.427, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 1.862, "chi2": -177.251, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 118.803, "C1C1_dist": 9.342, "N1N9_dist": 8.681, "C6C8_dist": 9.424, "CNNC_torsion": 168.622, "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[2.93],N6(amino)-N3[2.74],N1-N2(amino)[2.97]", "interBase_angle": 0.829, "planarity": 0.027, "simple_Shear": 1.675, "simple_Stretch": 4.884, "simple_Buckle": -0.048, "simple_Propeller": -0.828, "bp_simpleParams": [ 1.675, 4.884, 0.101, -0.048, -0.828, 58.824 ], "bp_params": [ -4.024, 3.237, 0.101, 0.762, -0.327, 58.823 ], "frame": { "rmsd": null, "origin": [ 259.333, 146.768, 120.153 ], "x_axis": [ -0.234, 0.972, -0.019 ], "y_axis": [ 0.648, 0.142, -0.748 ], "z_axis": [ -0.724, -0.187, -0.663 ], "quaternion": [ -0.247, 0.567, 0.714, -0.327 ] } }, { "index": 101, "nt1": "///2/144", "nt2": "///2/175", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.766, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.833, "chi2": -178.342, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.195, "C1C1_dist": 10.545, "N1N9_dist": 8.849, "C6C8_dist": 9.834, "CNNC_torsion": -0.389, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 4.254, "planarity": 0.113, "simple_Shear": -0.034, "simple_Stretch": -0.122, "simple_Buckle": -1.363, "simple_Propeller": -4.030, "bp_simpleParams": [ -0.034, -0.122, -0.445, -1.363, -4.030, 2.170 ], "bp_params": [ -0.033, -0.122, -0.445, -1.329, -4.041, 2.172 ], "frame": { "rmsd": null, "origin": [ 264.615, 150.880, 123.673 ], "x_axis": [ -0.495, -0.568, 0.657 ], "y_axis": [ 0.449, -0.815, -0.366 ], "z_axis": [ 0.744, 0.114, 0.659 ], "quaternion": [ -0.295, 0.406, -0.073, 0.862 ] } }, { "index": 102, "nt1": "///2/145", "nt2": "///2/174", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.132, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.698, "chi2": -158.630, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.786, "C1C1_dist": 10.671, "N1N9_dist": 8.963, "C6C8_dist": 9.922, "CNNC_torsion": -1.099, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 1.831, "planarity": 0.023, "simple_Shear": -0.175, "simple_Stretch": -0.107, "simple_Buckle": -0.687, "simple_Propeller": 1.698, "bp_simpleParams": [ -0.175, -0.107, -0.022, -0.687, 1.698, 1.116 ], "bp_params": [ -0.174, -0.109, -0.022, -0.709, 1.688, 1.116 ], "frame": { "rmsd": null, "origin": [ 266.186, 153.049, 126.685 ], "x_axis": [ -0.343, -0.870, 0.354 ], "y_axis": [ 0.604, -0.493, -0.626 ], "z_axis": [ 0.719, -0.001, 0.695 ], "quaternion": [ -0.463, 0.337, -0.197, 0.796 ] } }, { "index": 103, "nt1": "///2/146", "nt2": "///2/173", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -132.544, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 40.137, "chi2": 168.366, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 40.528, "C1C1_dist": 13.169, "N1N9_dist": 10.929, "C6C8_dist": 11.130, "CNNC_torsion": 4.687, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[2.76],N1(imino)-N1[3.00]", "interBase_angle": 6.793, "planarity": 0.112, "simple_Shear": -0.314, "simple_Stretch": 1.544, "simple_Buckle": 6.527, "simple_Propeller": 1.881, "bp_simpleParams": [ -0.314, 1.544, -0.206, 6.527, 1.881, -24.991 ], "bp_params": [ -0.362, 1.534, -0.206, 6.466, 2.082, -24.956 ], "frame": { "rmsd": null, "origin": [ 267.484, 154.595, 130.012 ], "x_axis": [ 0.027, -0.996, -0.080 ], "y_axis": [ 0.749, 0.073, -0.658 ], "z_axis": [ 0.662, -0.042, 0.749 ], "quaternion": [ 0.680, -0.227, 0.273, -0.642 ] } }, { "index": 104, "nt1": "///2/148", "nt2": "///2/170", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -153.939, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 27.768, "chi2": -168.832, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 18.675, "C1C1_dist": 9.866, "N1N9_dist": 7.240, "C6C8_dist": 6.266, "CNNC_torsion": 152.224, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.02],N3(imino)-N7[3.09]", "interBase_angle": 8.349, "planarity": 0.411, "simple_Shear": 3.677, "simple_Stretch": 0.271, "simple_Buckle": -7.143, "simple_Propeller": -4.323, "bp_simpleParams": [ 3.677, 0.271, -1.905, -7.143, -4.323, -94.094 ], "bp_params": [ 3.213, -1.809, -1.905, -8.342, 0.355, -93.943 ], "frame": { "rmsd": null, "origin": [ 269.657, 153.091, 137.438 ], "x_axis": [ 0.805, 0.265, -0.530 ], "y_axis": [ -0.064, 0.928, 0.367 ], "z_axis": [ 0.589, -0.261, 0.765 ], "quaternion": [ 0.935, 0.168, 0.299, 0.088 ] } }, { "index": 105, "nt1": "///2/148", "nt2": "///2/171", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -153.939, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.764, "chi2": -131.783, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 4.421, "C1C1_dist": 11.829, "N1N9_dist": 9.450, "C6C8_dist": 8.921, "CNNC_torsion": 171.981, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.61]", "interBase_angle": 18.427, "planarity": 0.327, "simple_Shear": 4.390, "simple_Stretch": 1.936, "simple_Buckle": -13.586, "simple_Propeller": -12.449, "bp_simpleParams": [ 4.390, 1.936, 1.654, -13.586, -12.449, -69.523 ], "bp_params": [ 4.732, -0.792, 1.654, -18.191, -2.939, -68.863 ], "frame": { "rmsd": null, "origin": [ 268.151, 153.436, 136.478 ], "x_axis": [ 0.793, 0.061, -0.607 ], "y_axis": [ 0.163, 0.937, 0.308 ], "z_axis": [ 0.588, -0.343, 0.733 ], "quaternion": [ 0.930, 0.175, 0.321, -0.027 ] } }, { "index": 106, "nt1": "///2/149", "nt2": "///2/169", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 167.364, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 10.390, "chi2": -158.114, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.064, "C1C1_dist": 10.435, "N1N9_dist": 7.691, "C6C8_dist": 6.586, "CNNC_torsion": -166.771, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.12],N6(amino)-O2(carbonyl)[2.67]", "interBase_angle": 8.011, "planarity": 0.087, "simple_Shear": -3.094, "simple_Stretch": 0.645, "simple_Buckle": -7.560, "simple_Propeller": -2.649, "bp_simpleParams": [ -3.094, 0.645, -0.168, -7.560, -2.649, -95.297 ], "bp_params": [ -3.032, -0.891, -0.168, -5.418, -5.901, -95.309 ], "frame": { "rmsd": null, "origin": [ 273.434, 152.921, 140.653 ], "x_axis": [ 0.366, 0.481, -0.796 ], "y_axis": [ -0.545, 0.804, 0.235 ], "z_axis": [ 0.754, 0.348, 0.557 ], "quaternion": [ 0.826, -0.034, 0.469, 0.311 ] } }, { "index": 107, "nt1": "///2/150", "nt2": "///2/168", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 175.654, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 5.896, "chi2": -160.530, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.903, "C1C1_dist": 12.196, "N1N9_dist": 9.399, "C6C8_dist": 8.513, "CNNC_torsion": 32.517, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[2.69]", "interBase_angle": 16.824, "planarity": 0.269, "simple_Shear": -1.623, "simple_Stretch": 1.043, "simple_Buckle": -12.549, "simple_Propeller": 11.206, "bp_simpleParams": [ -1.623, 1.043, -0.625, -12.549, 11.206, -80.129 ], "bp_params": [ -1.818, 0.645, -0.625, -14.775, 8.047, -79.798 ], "frame": { "rmsd": null, "origin": [ 278.207, 152.835, 142.113 ], "x_axis": [ -0.187, 0.880, -0.436 ], "y_axis": [ -0.688, 0.200, 0.698 ], "z_axis": [ 0.702, 0.431, 0.568 ], "quaternion": [ 0.628, 0.106, 0.453, 0.624 ] } }, { "index": 108, "nt1": "///2/151", "nt2": "///2/167", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.515, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.259, "chi2": -145.844, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.557, "C1C1_dist": 10.888, "N1N9_dist": 8.983, "C6C8_dist": 9.831, "CNNC_torsion": 10.370, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 10.199, "planarity": 0.186, "simple_Shear": 0.156, "simple_Stretch": -0.197, "simple_Buckle": -3.932, "simple_Propeller": 9.411, "bp_simpleParams": [ 0.156, -0.197, -0.574, -3.932, 9.411, -3.194 ], "bp_params": [ 0.154, -0.199, -0.574, -3.838, 9.450, -3.203 ], "frame": { "rmsd": null, "origin": [ 280.708, 157.726, 141.637 ], "x_axis": [ -0.612, 0.788, -0.068 ], "y_axis": [ -0.560, -0.372, 0.741 ], "z_axis": [ 0.558, 0.491, 0.669 ], "quaternion": [ 0.414, 0.151, 0.378, 0.814 ] } }, { "index": 109, "nt1": "///2/152", "nt2": "///2/166", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.355, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.769, "chi2": -179.755, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.785, "C1C1_dist": 10.718, "N1N9_dist": 8.970, "C6C8_dist": 9.901, "CNNC_torsion": 7.459, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.90],O4(carbonyl)-N6(amino)[3.01]", "interBase_angle": 12.555, "planarity": 0.151, "simple_Shear": -0.136, "simple_Stretch": -0.030, "simple_Buckle": 7.044, "simple_Propeller": 10.393, "bp_simpleParams": [ -0.136, -0.030, -0.175, 7.044, 10.393, -0.387 ], "bp_params": [ -0.136, -0.032, -0.175, 6.873, 10.507, -0.388 ], "frame": { "rmsd": null, "origin": [ 282.433, 160.854, 142.355 ], "x_axis": [ -0.898, 0.342, 0.275 ], "y_axis": [ -0.103, -0.773, 0.626 ], "z_axis": [ 0.427, 0.534, 0.730 ], "quaternion": [ 0.121, 0.190, 0.315, 0.922 ] } }, { "index": 110, "nt1": "///2/154", "nt2": "///2/165", "bp": "U+G", "name": "~Hoogsteen", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -158.324, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.547, "chi2": 54.606, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 39.661, "C1C1_dist": 9.816, "N1N9_dist": 8.197, "C6C8_dist": 8.139, "CNNC_torsion": -0.239, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O6(carbonyl)[3.82]", "interBase_angle": 44.899, "planarity": 0.618, "simple_Shear": -2.275, "simple_Stretch": 2.309, "simple_Buckle": -21.783, "simple_Propeller": -39.260, "bp_simpleParams": [ -2.275, 2.309, 1.084, -21.783, -39.260, -79.217 ], "bp_params": [ 1.270, 2.982, 1.084, -44.655, 4.666, -74.915 ], "frame": { "rmsd": null, "origin": [ 281.074, 166.431, 143.760 ], "x_axis": [ -0.086, -0.484, 0.871 ], "y_axis": [ 0.929, 0.276, 0.245 ], "z_axis": [ -0.359, 0.831, 0.426 ], "quaternion": [ 0.635, -0.230, -0.484, -0.556 ] } }, { "index": 111, "nt1": "///2/155", "nt2": "///2/163", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.699, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.844, "chi2": -160.017, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.577, "C1C1_dist": 10.606, "N1N9_dist": 8.943, "C6C8_dist": 9.844, "CNNC_torsion": -5.097, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.98],N1(imino)-O2(carbonyl)[2.92]", "interBase_angle": 11.091, "planarity": 0.139, "simple_Shear": -2.240, "simple_Stretch": 0.129, "simple_Buckle": -11.080, "simple_Propeller": -0.482, "bp_simpleParams": [ -2.240, 0.129, -0.088, -11.080, -0.482, -0.806 ], "bp_params": [ -2.214, -0.365, -0.088, -10.705, -2.897, -0.803 ], "frame": { "rmsd": null, "origin": [ 279.032, 169.030, 149.375 ], "x_axis": [ -0.301, -0.868, 0.394 ], "y_axis": [ 0.948, -0.227, 0.224 ], "z_axis": [ -0.105, 0.441, 0.891 ], "quaternion": [ 0.584, -0.093, -0.214, -0.778 ] } }, { "index": 112, "nt1": "///2/156", "nt2": "///2/162", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -109.463, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.261, "chi2": -163.540, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.710, "C1C1_dist": 11.206, "N1N9_dist": 9.537, "C6C8_dist": 10.384, "CNNC_torsion": -5.110, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.78],N2(amino)-N3[3.90]", "interBase_angle": 39.586, "planarity": 0.601, "simple_Shear": 0.843, "simple_Stretch": 0.973, "simple_Buckle": 39.491, "simple_Propeller": -2.733, "bp_simpleParams": [ 0.843, 0.973, -0.388, 39.491, -2.733, -0.973 ], "bp_params": [ 0.923, 0.898, -0.388, 39.133, -5.970, -0.918 ], "frame": { "rmsd": null, "origin": [ 277.750, 172.108, 150.392 ], "x_axis": [ 0.307, -0.843, 0.441 ], "y_axis": [ 0.938, 0.347, 0.010 ], "z_axis": [ -0.162, 0.411, 0.897 ], "quaternion": [ 0.799, -0.125, -0.189, -0.558 ] } }, { "index": 113, "nt1": "///2/158", "nt2": "///2/466", "bp": "A-G", "name": "~rHoogsteen", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -75.378, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 21.769, "chi2": 60.568, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 19.955, "C1C1_dist": 11.294, "N1N9_dist": 8.601, "C6C8_dist": 7.340, "CNNC_torsion": 173.030, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N7[2.45]", "interBase_angle": 64.402, "planarity": 0.757, "simple_Shear": 3.158, "simple_Stretch": 2.083, "simple_Buckle": 35.493, "simple_Propeller": -53.739, "bp_simpleParams": [ 3.158, 2.083, -2.738, 35.493, -53.739, -94.704 ], "bp_params": [ 3.779, 0.158, -2.738, 1.296, -64.389, -104.125 ], "frame": { "rmsd": null, "origin": [ 275.542, 186.735, 157.622 ], "x_axis": [ 0.565, -0.707, -0.425 ], "y_axis": [ -0.092, -0.566, 0.819 ], "z_axis": [ -0.820, -0.424, -0.385 ], "quaternion": [ 0.392, 0.793, -0.252, -0.392 ] } }, { "index": 114, "nt1": "///2/176", "nt2": "///2/313", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -160.197, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.841, "chi2": -77.630, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 13.612, "C1C1_dist": 10.253, "N1N9_dist": 7.618, "C6C8_dist": 6.625, "CNNC_torsion": 165.209, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.83],N3(imino)-N7[3.13]", "interBase_angle": 2.927, "planarity": 0.155, "simple_Shear": 3.856, "simple_Stretch": 0.967, "simple_Buckle": -2.046, "simple_Propeller": -2.093, "bp_simpleParams": [ 3.856, 0.967, -0.785, -2.046, -2.093, -93.674 ], "bp_params": [ 3.709, -1.431, -0.785, -2.878, -0.532, -93.656 ], "frame": { "rmsd": null, "origin": [ 263.733, 147.522, 120.406 ], "x_axis": [ -0.543, 0.745, 0.386 ], "y_axis": [ 0.422, 0.640, -0.641 ], "z_axis": [ -0.726, -0.185, -0.663 ], "quaternion": [ -0.330, 0.346, 0.844, -0.245 ] } }, { "index": 115, "nt1": "///2/185", "nt2": "///2/214", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.493, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.738, "chi2": -131.853, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 62.310, "C1C1_dist": 10.388, "N1N9_dist": 8.595, "C6C8_dist": 9.364, "CNNC_torsion": 13.865, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.87],N1(imino)-O2(carbonyl)[2.96],N2(amino)-O2(carbonyl)[3.34]", "interBase_angle": 15.997, "planarity": 0.311, "simple_Shear": -1.714, "simple_Stretch": -0.547, "simple_Buckle": -15.992, "simple_Propeller": 0.392, "bp_simpleParams": [ -1.714, -0.547, -1.734, -15.992, 0.392, -5.355 ], "bp_params": [ -1.599, -0.825, -1.734, -15.833, -2.288, -5.306 ], "frame": { "rmsd": null, "origin": [ 242.217, 145.048, 100.708 ], "x_axis": [ 0.893, 0.175, -0.415 ], "y_axis": [ -0.073, -0.853, -0.516 ], "z_axis": [ -0.445, 0.491, -0.749 ], "quaternion": [ -0.269, 0.935, 0.027, -0.230 ] } }, { "index": 116, "nt1": "///2/186", "nt2": "///2/213", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.166, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.793, "chi2": -169.350, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.476, "C1C1_dist": 10.610, "N1N9_dist": 8.878, "C6C8_dist": 9.807, "CNNC_torsion": 9.063, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 12.062, "planarity": 0.241, "simple_Shear": 0.176, "simple_Stretch": -0.198, "simple_Buckle": -10.042, "simple_Propeller": 6.682, "bp_simpleParams": [ 0.176, -0.198, -0.599, -10.042, 6.682, -0.255 ], "bp_params": [ 0.174, -0.200, -0.599, -9.975, 6.782, -0.254 ], "frame": { "rmsd": null, "origin": [ 241.015, 147.528, 98.343 ], "x_axis": [ 0.685, -0.497, -0.533 ], "y_axis": [ -0.594, -0.805, -0.014 ], "z_axis": [ -0.422, 0.325, -0.846 ], "quaternion": [ -0.093, 0.913, -0.298, -0.261 ] } }, { "index": 117, "nt1": "///2/187", "nt2": "///2/212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.630, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.279, "chi2": -179.099, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.106, "C1C1_dist": 10.761, "N1N9_dist": 8.945, "C6C8_dist": 9.888, "CNNC_torsion": 4.572, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 13.243, "planarity": 0.209, "simple_Shear": -0.161, "simple_Stretch": -0.120, "simple_Buckle": -5.440, "simple_Propeller": 12.074, "bp_simpleParams": [ -0.161, -0.120, 0.229, -5.440, 12.074, 2.055 ], "bp_params": [ -0.159, -0.123, 0.229, -5.587, 12.007, 2.064 ], "frame": { "rmsd": null, "origin": [ 241.229, 148.966, 95.188 ], "x_axis": [ 0.345, -0.874, -0.341 ], "y_axis": [ -0.854, -0.443, 0.273 ], "z_axis": [ -0.390, 0.197, -0.899 ], "quaternion": [ 0.023, 0.820, -0.527, -0.223 ] } }, { "index": 118, "nt1": "///2/188", "nt2": "///2/211", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.353, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.407, "chi2": 153.370, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.010, "C1C1_dist": 10.744, "N1N9_dist": 8.910, "C6C8_dist": 9.858, "CNNC_torsion": 9.492, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 17.193, "planarity": 0.246, "simple_Shear": 0.202, "simple_Stretch": -0.138, "simple_Buckle": 5.847, "simple_Propeller": 16.168, "bp_simpleParams": [ 0.202, -0.138, 0.073, 5.847, 16.168, 2.918 ], "bp_params": [ 0.199, -0.142, 0.073, 6.109, 16.071, 2.943 ], "frame": { "rmsd": null, "origin": [ 242.200, 148.840, 91.459 ], "x_axis": [ -0.229, -0.972, 0.054 ], "y_axis": [ -0.902, 0.233, 0.363 ], "z_axis": [ -0.366, 0.035, -0.930 ], "quaternion": [ -0.136, -0.606, 0.773, 0.129 ] } }, { "index": 119, "nt1": "///2/189", "nt2": "///2/210", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.442, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.890, "chi2": -163.501, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.803, "C1C1_dist": 10.886, "N1N9_dist": 8.952, "C6C8_dist": 9.636, "CNNC_torsion": 27.728, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O4(carbonyl)[3.70]", "interBase_angle": 10.709, "planarity": 0.294, "simple_Shear": 3.150, "simple_Stretch": 0.071, "simple_Buckle": -10.201, "simple_Propeller": 3.261, "bp_simpleParams": [ 3.150, 0.071, -1.354, -10.201, 3.261, -17.161 ], "bp_params": [ 3.013, -0.922, -1.354, -8.664, 6.294, -17.139 ], "frame": { "rmsd": null, "origin": [ 243.693, 148.481, 87.102 ], "x_axis": [ -0.728, -0.512, 0.456 ], "y_axis": [ -0.623, 0.772, -0.128 ], "z_axis": [ -0.287, -0.377, -0.881 ], "quaternion": [ -0.202, -0.309, 0.919, -0.137 ] } }, { "index": 120, "nt1": "///2/191", "nt2": "///2/208", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 176.014, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 19.605, "chi2": -164.403, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 97.231, "C1C1_dist": 9.157, "N1N9_dist": 8.183, "C6C8_dist": 8.329, "CNNC_torsion": -163.952, "hbonds_num": 3, "hbonds_desc": "OP2-N2(amino)[2.27],N7-N2(amino)[3.95],N6(amino)-O2'(hydroxyl)[2.96]", "interBase_angle": 32.599, "planarity": 0.375, "simple_Shear": -8.933, "simple_Stretch": 4.695, "simple_Buckle": -30.909, "simple_Propeller": -10.360, "bp_simpleParams": [ -8.933, 4.695, 0.524, -30.909, -10.360, -23.672 ], "bp_params": [ -7.677, -6.550, 0.524, -2.076, -32.533, -24.626 ], "frame": { "rmsd": null, "origin": [ 241.145, 143.765, 82.392 ], "x_axis": [ -0.856, -0.257, 0.449 ], "y_axis": [ -0.355, 0.923, -0.148 ], "z_axis": [ -0.377, -0.286, -0.881 ], "quaternion": [ -0.216, -0.160, 0.957, -0.113 ] } }, { "index": 121, "nt1": "///2/192", "nt2": "///2/207", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.083, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.633, "chi2": -166.251, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.706, "C1C1_dist": 11.117, "N1N9_dist": 9.138, "C6C8_dist": 9.807, "CNNC_torsion": -13.307, "hbonds_num": 2, "hbonds_desc": "N3-N1(imino)[2.99],N4(amino)-O6(carbonyl)[2.51]", "interBase_angle": 21.861, "planarity": 0.330, "simple_Shear": -0.895, "simple_Stretch": -0.131, "simple_Buckle": -7.294, "simple_Propeller": -20.608, "bp_simpleParams": [ -0.895, -0.131, -0.503, -7.294, -20.608, -9.913 ], "bp_params": [ -0.880, -0.210, -0.503, -5.371, -21.191, -10.074 ], "frame": { "rmsd": null, "origin": [ 238.027, 141.655, 80.071 ], "x_axis": [ -0.716, 0.698, -0.007 ], "y_axis": [ 0.548, 0.556, -0.626 ], "z_axis": [ -0.433, -0.451, -0.780 ], "quaternion": [ -0.122, 0.357, 0.873, -0.308 ] } }, { "index": 122, "nt1": "///2/193", "nt2": "///2/206", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.784, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.638, "chi2": -171.270, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.428, "C1C1_dist": 10.770, "N1N9_dist": 8.932, "C6C8_dist": 9.833, "CNNC_torsion": 2.046, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 4.076, "planarity": 0.137, "simple_Shear": 0.175, "simple_Stretch": -0.190, "simple_Buckle": -3.810, "simple_Propeller": -1.447, "bp_simpleParams": [ 0.175, -0.190, -0.419, -3.810, -1.447, -0.876 ], "bp_params": [ 0.173, -0.192, -0.419, -3.829, -1.397, -0.876 ], "frame": { "rmsd": null, "origin": [ 234.249, 140.774, 78.281 ], "x_axis": [ -0.279, 0.924, -0.261 ], "y_axis": [ 0.817, 0.085, -0.571 ], "z_axis": [ -0.505, -0.372, -0.779 ], "quaternion": [ -0.083, 0.595, 0.732, -0.322 ] } }, { "index": 123, "nt1": "///2/194", "nt2": "///2/205", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.702, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.028, "chi2": -164.941, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.541, "C1C1_dist": 10.638, "N1N9_dist": 8.911, "C6C8_dist": 9.866, "CNNC_torsion": 1.578, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 3.194, "planarity": 0.146, "simple_Shear": 0.174, "simple_Stretch": -0.176, "simple_Buckle": -0.947, "simple_Propeller": -3.050, "bp_simpleParams": [ 0.174, -0.176, -0.566, -0.947, -3.050, 1.294 ], "bp_params": [ 0.172, -0.179, -0.566, -0.986, -3.038, 1.295 ], "frame": { "rmsd": null, "origin": [ 231.143, 139.794, 76.211 ], "x_axis": [ 0.245, 0.845, -0.475 ], "y_axis": [ 0.860, -0.416, -0.297 ], "z_axis": [ -0.448, -0.336, -0.828 ], "quaternion": [ 0.012, 0.789, 0.540, -0.293 ] } }, { "index": 124, "nt1": "///2/195", "nt2": "///2/204", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.478, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.748, "chi2": -176.530, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.694, "C1C1_dist": 10.686, "N1N9_dist": 8.937, "C6C8_dist": 9.897, "CNNC_torsion": 9.965, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 15.659, "planarity": 0.185, "simple_Shear": 0.184, "simple_Stretch": -0.116, "simple_Buckle": -4.985, "simple_Propeller": 14.845, "bp_simpleParams": [ 0.184, -0.116, 0.084, -4.985, 14.845, 2.094 ], "bp_params": [ 0.182, -0.118, 0.084, -4.795, 14.907, 2.110 ], "frame": { "rmsd": null, "origin": [ 228.179, 140.347, 73.451 ], "x_axis": [ 0.735, 0.549, -0.398 ], "y_axis": [ 0.613, -0.789, 0.045 ], "z_axis": [ -0.289, -0.277, -0.916 ], "quaternion": [ 0.087, 0.927, 0.313, -0.185 ] } }, { "index": 125, "nt1": "///2/196", "nt2": "///2/197", "bp": "C+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -166.973, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 116.895, "chi2": -173.398, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.928, "C1C1_dist": 6.840, "N1N9_dist": 6.813, "C6C8_dist": 6.734, "CNNC_torsion": -24.546, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O5'[2.91]", "interBase_angle": 27.102, "planarity": 0.384, "simple_Shear": 0.174, "simple_Stretch": 7.068, "simple_Buckle": 25.270, "simple_Propeller": -9.796, "bp_simpleParams": [ 0.174, 7.068, -0.678, 25.270, -9.796, 4.509 ], "bp_params": [ 6.529, 2.713, -0.678, 1.448, -27.063, 4.637 ], "frame": { "rmsd": null, "origin": [ 223.096, 142.425, 68.633 ], "x_axis": [ 0.940, 0.190, 0.282 ], "y_axis": [ 0.124, -0.963, 0.238 ], "z_axis": [ 0.317, -0.189, -0.930 ], "quaternion": [ 0.109, 0.979, 0.080, 0.153 ] } }, { "index": 126, "nt1": "///2/196", "nt2": "///2/203", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.973, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.152, "chi2": -174.823, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.479, "C1C1_dist": 10.518, "N1N9_dist": 8.864, "C6C8_dist": 9.880, "CNNC_torsion": 18.836, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[3.01]", "interBase_angle": 25.849, "planarity": 0.321, "simple_Shear": 0.283, "simple_Stretch": -0.137, "simple_Buckle": -2.738, "simple_Propeller": 25.703, "bp_simpleParams": [ 0.283, -0.137, 0.121, -2.738, 25.703, 4.909 ], "bp_params": [ 0.280, -0.143, 0.121, -2.150, 25.759, 5.035 ], "frame": { "rmsd": null, "origin": [ 226.107, 141.734, 70.286 ], "x_axis": [ 0.982, 0.096, -0.163 ], "y_axis": [ 0.129, -0.970, 0.208 ], "z_axis": [ -0.139, -0.225, -0.964 ], "quaternion": [ 0.109, 0.989, 0.057, -0.076 ] } }, { "index": 127, "nt1": "///2/197", "nt2": "///2/202", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.398, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 22.192, "chi2": 176.386, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 29.996, "C1C1_dist": 13.335, "N1N9_dist": 10.702, "C6C8_dist": 10.383, "CNNC_torsion": 63.300, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)*O6(carbonyl)[2.98]", "interBase_angle": 49.396, "planarity": 0.633, "simple_Shear": -1.644, "simple_Stretch": 1.785, "simple_Buckle": 25.159, "simple_Propeller": 42.508, "bp_simpleParams": [ -1.644, 1.785, 0.417, 25.159, 42.508, -54.711 ], "bp_params": [ -1.909, 1.499, 0.417, 17.369, 46.241, -58.209 ], "frame": { "rmsd": null, "origin": [ 221.076, 143.504, 67.346 ], "x_axis": [ 0.938, -0.297, 0.180 ], "y_axis": [ -0.323, -0.936, 0.140 ], "z_axis": [ 0.127, -0.190, -0.974 ], "quaternion": [ 0.084, 0.981, -0.158, 0.078 ] } }, { "index": 128, "nt1": "///2/198", "nt2": "///2/201", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -163.220, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.290, "chi2": -172.305, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 22.598, "C1C1_dist": 10.121, "N1N9_dist": 8.377, "C6C8_dist": 8.093, "CNNC_torsion": -168.028, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.63],N3(imino)-OP2[3.85]", "interBase_angle": 22.342, "planarity": 0.296, "simple_Shear": 7.231, "simple_Stretch": 3.597, "simple_Buckle": 20.962, "simple_Propeller": 7.728, "bp_simpleParams": [ 7.231, 3.597, -1.869, 20.962, 7.728, -65.038 ], "bp_params": [ 6.876, -4.236, -1.869, 17.599, -13.763, -64.802 ], "frame": { "rmsd": null, "origin": [ 224.861, 144.384, 64.047 ], "x_axis": [ -0.054, -0.956, 0.288 ], "y_axis": [ -0.909, -0.072, -0.410 ], "z_axis": [ 0.413, -0.284, -0.865 ], "quaternion": [ -0.046, 0.686, -0.680, 0.255 ] } }, { "index": 129, "nt1": "///2/198", "nt2": "///2/202", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW-M", "intra_chain": true, "chi1": -163.220, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 83.158, "chi2": 176.386, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 32.491, "C1C1_dist": 9.803, "N1N9_dist": 8.411, "C6C8_dist": 9.124, "CNNC_torsion": -11.501, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O6(carbonyl)[3.46]", "interBase_angle": 50.828, "planarity": 0.921, "simple_Shear": 4.363, "simple_Stretch": 0.599, "simple_Buckle": 21.255, "simple_Propeller": 46.170, "bp_simpleParams": [ 4.363, 0.599, 1.906, 21.255, 46.170, 9.691 ], "bp_params": [ 4.070, -1.682, 1.906, 41.120, 29.878, 9.436 ], "frame": { "rmsd": null, "origin": [ 224.201, 142.737, 67.165 ], "x_axis": [ 0.598, -0.765, 0.237 ], "y_axis": [ -0.789, -0.614, 0.008 ], "z_axis": [ 0.139, -0.192, -0.972 ], "quaternion": [ 0.056, 0.892, -0.436, 0.105 ] } }, { "index": 130, "nt1": "///2/216", "nt2": "///2/309", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.856, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.898, "chi2": -166.791, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.762, "C1C1_dist": 10.553, "N1N9_dist": 9.304, "C6C8_dist": 10.452, "CNNC_torsion": 16.787, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.27],N3-N2(amino)[3.39]", "interBase_angle": 41.429, "planarity": 0.461, "simple_Shear": -0.822, "simple_Stretch": 0.927, "simple_Buckle": 41.341, "simple_Propeller": -2.699, "bp_simpleParams": [ -0.822, 0.927, -2.376, 41.341, -2.699, 15.943 ], "bp_params": [ -0.904, 0.847, -2.376, 41.410, 1.253, 14.927 ], "frame": { "rmsd": null, "origin": [ 244.620, 153.755, 115.263 ], "x_axis": [ 0.245, 0.416, -0.876 ], "y_axis": [ -0.752, -0.488, -0.443 ], "z_axis": [ -0.612, 0.767, 0.193 ], "quaternion": [ -0.487, 0.621, -0.135, -0.599 ] } }, { "index": 131, "nt1": "///2/217", "nt2": "///2/304", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.894, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.852, "chi2": -158.271, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 96.634, "C1C1_dist": 9.973, "N1N9_dist": 9.108, "C6C8_dist": 10.547, "CNNC_torsion": -6.859, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.31],N1*O2(carbonyl)[2.90]", "unusual_base2base_hbonds": 1, "interBase_angle": 5.498, "planarity": 0.075, "simple_Shear": -3.909, "simple_Stretch": 1.886, "simple_Buckle": -0.274, "simple_Propeller": -5.491, "bp_simpleParams": [ -3.909, 1.886, 0.292, -0.274, -5.491, 34.942 ], "bp_params": [ -4.337, 0.155, 0.292, 1.958, -5.137, 34.970 ], "frame": { "rmsd": null, "origin": [ 243.477, 157.213, 111.334 ], "x_axis": [ 0.172, -0.440, -0.881 ], "y_axis": [ -0.342, -0.866, 0.365 ], "z_axis": [ -0.924, 0.239, -0.299 ], "quaternion": [ 0.041, 0.764, -0.256, -0.591 ] } }, { "index": 132, "nt1": "///2/218", "nt2": "///2/303", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.422, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.467, "chi2": -157.494, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.375, "C1C1_dist": 9.085, "N1N9_dist": 7.465, "C6C8_dist": 8.524, "CNNC_torsion": -4.820, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O2(carbonyl)[3.50],O4(carbonyl)-N4(amino)[3.02]", "interBase_angle": 18.157, "planarity": 0.256, "simple_Shear": -2.161, "simple_Stretch": -1.356, "simple_Buckle": -14.338, "simple_Propeller": -11.139, "bp_simpleParams": [ -2.161, -1.356, -0.905, -14.338, -11.139, 3.463 ], "bp_params": [ -1.830, -1.777, -0.905, -11.711, -13.875, 3.470 ], "frame": { "rmsd": null, "origin": [ 240.239, 160.400, 110.695 ], "x_axis": [ 0.077, -0.934, -0.348 ], "y_axis": [ -0.379, -0.350, 0.856 ], "z_axis": [ -0.922, 0.066, -0.381 ], "quaternion": [ 0.294, 0.672, -0.488, -0.472 ] } }, { "index": 133, "nt1": "///2/219", "nt2": "///2/302", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.465, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.256, "chi2": -158.766, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.760, "C1C1_dist": 10.336, "N1N9_dist": 8.665, "C6C8_dist": 9.589, "CNNC_torsion": 10.100, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.89],O4(carbonyl)-N6(amino)[2.94]", "interBase_angle": 14.481, "planarity": 0.373, "simple_Shear": -0.123, "simple_Stretch": -0.350, "simple_Buckle": -14.412, "simple_Propeller": 1.412, "bp_simpleParams": [ -0.123, -0.350, -1.129, -14.412, 1.412, -0.706 ], "bp_params": [ -0.117, -0.352, -1.129, -14.435, 1.151, -0.701 ], "frame": { "rmsd": null, "origin": [ 237.253, 161.661, 108.234 ], "x_axis": [ -0.128, -0.949, 0.287 ], "y_axis": [ -0.281, 0.312, 0.907 ], "z_axis": [ -0.951, 0.036, -0.307 ], "quaternion": [ -0.468, -0.465, 0.661, 0.357 ] } }, { "index": 134, "nt1": "///2/220", "nt2": "///2/301", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.518, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.047, "chi2": -137.013, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.161, "C1C1_dist": 10.420, "N1N9_dist": 8.813, "C6C8_dist": 9.830, "CNNC_torsion": 7.723, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.85],O4(carbonyl)-N6(amino)[3.07]", "interBase_angle": 11.723, "planarity": 0.207, "simple_Shear": -0.071, "simple_Stretch": -0.093, "simple_Buckle": -9.690, "simple_Propeller": 6.597, "bp_simpleParams": [ -0.071, -0.093, -0.457, -9.690, 6.597, 2.947 ], "bp_params": [ -0.070, -0.094, -0.457, -9.788, 6.451, 2.941 ], "frame": { "rmsd": null, "origin": [ 234.057, 161.948, 105.656 ], "x_axis": [ -0.104, -0.796, 0.596 ], "y_axis": [ -0.109, 0.605, 0.789 ], "z_axis": [ -0.989, 0.018, -0.150 ], "quaternion": [ 0.581, 0.332, -0.682, -0.296 ] } }, { "index": 135, "nt1": "///2/221", "nt2": "///2/300", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.299, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.365, "chi2": -160.631, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.025, "C1C1_dist": 10.391, "N1N9_dist": 8.995, "C6C8_dist": 10.232, "CNNC_torsion": -6.151, "hbonds_num": 1, "hbonds_desc": "N1-N3(imino)[3.19]", "interBase_angle": 10.000, "planarity": 0.123, "simple_Shear": 0.784, "simple_Stretch": 0.392, "simple_Buckle": -4.638, "simple_Propeller": -8.860, "bp_simpleParams": [ 0.784, 0.392, 0.032, -4.638, -8.860, 13.132 ], "bp_params": [ 0.815, 0.321, 0.032, -5.391, -8.423, 13.153 ], "frame": { "rmsd": null, "origin": [ 231.081, 160.316, 105.435 ], "x_axis": [ 0.178, -0.311, 0.933 ], "y_axis": [ -0.035, 0.946, 0.322 ], "z_axis": [ -0.983, -0.090, 0.158 ], "quaternion": [ 0.755, 0.136, -0.634, -0.092 ] } }, { "index": 136, "nt1": "///2/222", "nt2": "///2/299", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.076, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.648, "chi2": -166.625, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.762, "C1C1_dist": 10.313, "N1N9_dist": 8.756, "C6C8_dist": 9.815, "CNNC_torsion": 4.954, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.80],O4(carbonyl)-N6(amino)[3.05]", "interBase_angle": 6.467, "planarity": 0.135, "simple_Shear": -0.014, "simple_Stretch": -0.124, "simple_Buckle": -5.701, "simple_Propeller": 3.053, "bp_simpleParams": [ -0.014, -0.124, -0.358, -5.701, 3.053, 4.627 ], "bp_params": [ -0.014, -0.124, -0.358, -5.724, 3.010, 4.623 ], "frame": { "rmsd": null, "origin": [ 227.764, 158.040, 105.394 ], "x_axis": [ 0.230, 0.152, 0.961 ], "y_axis": [ -0.103, 0.986, -0.131 ], "z_axis": [ -0.968, -0.069, 0.242 ], "quaternion": [ 0.784, -0.020, -0.615, 0.081 ] } }, { "index": 137, "nt1": "///2/223", "nt2": "///2/298", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.766, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.675, "chi2": -177.102, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.039, "C1C1_dist": 10.723, "N1N9_dist": 8.979, "C6C8_dist": 9.914, "CNNC_torsion": 2.153, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 5.337, "planarity": 0.063, "simple_Shear": 0.164, "simple_Stretch": -0.109, "simple_Buckle": -3.793, "simple_Propeller": 3.755, "bp_simpleParams": [ 0.164, -0.109, -0.001, -3.793, 3.755, 0.342 ], "bp_params": [ 0.163, -0.111, -0.001, -3.750, 3.798, 0.342 ], "frame": { "rmsd": null, "origin": [ 225.009, 156.155, 106.777 ], "x_axis": [ 0.273, 0.684, 0.677 ], "y_axis": [ -0.222, 0.729, -0.647 ], "z_axis": [ -0.936, 0.027, 0.351 ], "quaternion": [ 0.767, -0.220, -0.526, 0.295 ] } }, { "index": 138, "nt1": "///2/224", "nt2": "///2/297", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.012, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.471, "chi2": -174.318, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.663, "C1C1_dist": 12.679, "N1N9_dist": 10.875, "C6C8_dist": 11.518, "CNNC_torsion": 20.997, "hbonds_num": 2, "hbonds_desc": "N1-N6(amino)[3.57],N1*N1[3.23]", "unusual_base2base_hbonds": 1, "interBase_angle": 19.808, "planarity": 0.362, "simple_Shear": 0.916, "simple_Stretch": 1.813, "simple_Buckle": -16.458, "simple_Propeller": 11.021, "bp_simpleParams": [ 0.916, 1.813, -1.181, -16.458, 11.021, -7.221 ], "bp_params": [ 1.070, 1.726, -1.181, -15.458, 12.386, -7.199 ], "frame": { "rmsd": null, "origin": [ 222.390, 154.565, 109.830 ], "x_axis": [ 0.162, 0.963, 0.214 ], "y_axis": [ -0.476, 0.266, -0.838 ], "z_axis": [ -0.864, 0.034, 0.502 ], "quaternion": [ 0.695, -0.314, -0.388, 0.518 ] } }, { "index": 139, "nt1": "///2/225", "nt2": "///2/288", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "c.H", "DSSR": "c.+M", "intra_chain": true, "chi1": -167.525, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 104.434, "chi2": -155.891, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 14.453, "C1C1_dist": 12.676, "N1N9_dist": 11.665, "C6C8_dist": 12.045, "CNNC_torsion": -17.933, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O6(carbonyl)[3.83]", "interBase_angle": 13.323, "planarity": 0.206, "simple_Shear": 0.161, "simple_Stretch": 7.054, "simple_Buckle": 12.746, "simple_Propeller": 3.879, "bp_simpleParams": [ 0.161, 7.054, -0.649, 12.746, 3.879, -60.473 ], "bp_params": [ 7.042, -0.433, -0.649, 3.371, -12.890, -60.768 ], "frame": { "rmsd": null, "origin": [ 219.621, 154.668, 113.736 ], "x_axis": [ -0.099, 0.629, -0.771 ], "y_axis": [ -0.420, -0.729, -0.540 ], "z_axis": [ -0.902, 0.271, 0.336 ], "quaternion": [ 0.356, -0.569, -0.091, 0.736 ] } }, { "index": 140, "nt1": "///2/225", "nt2": "///2/296", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "tW.", "DSSR": "tW-.", "intra_chain": true, "chi1": -167.525, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 72.383, "chi2": -170.548, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.502, "C1C1_dist": 13.439, "N1N9_dist": 11.599, "C6C8_dist": 11.927, "CNNC_torsion": 53.887, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[2.93]", "interBase_angle": 18.913, "planarity": 0.235, "simple_Shear": 5.619, "simple_Stretch": 3.918, "simple_Buckle": -10.839, "simple_Propeller": 15.499, "bp_simpleParams": [ 5.619, 3.918, 0.032, -10.839, 15.499, -24.235 ], "bp_params": [ 6.850, -0.041, 0.032, 0.115, 18.913, -24.558 ], "frame": { "rmsd": null, "origin": [ 220.322, 153.951, 112.542 ], "x_axis": [ -0.193, 0.873, -0.449 ], "y_axis": [ -0.485, -0.482, -0.729 ], "z_axis": [ -0.853, 0.077, 0.517 ], "quaternion": [ 0.459, -0.440, -0.220, 0.740 ] } }, { "index": 141, "nt1": "///2/287", "nt2": "///2/296", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.438, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 27.302, "chi2": -170.548, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.644, "C1C1_dist": 10.099, "N1N9_dist": 7.990, "C6C8_dist": 8.459, "CNNC_torsion": 10.466, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N3(imino)[2.33]", "interBase_angle": 12.797, "planarity": 0.173, "simple_Shear": -3.087, "simple_Stretch": -0.865, "simple_Buckle": 8.904, "simple_Propeller": -9.192, "bp_simpleParams": [ -3.087, -0.865, -0.588, 8.904, -9.192, -25.728 ], "bp_params": [ -2.654, -1.800, -0.588, 11.359, -5.895, -25.639 ], "frame": { "rmsd": null, "origin": [ 222.197, 150.243, 114.885 ], "x_axis": [ -0.366, 0.874, -0.319 ], "y_axis": [ -0.564, -0.481, -0.671 ], "z_axis": [ -0.740, -0.066, 0.669 ], "quaternion": [ 0.454, -0.334, -0.232, 0.793 ] } }, { "index": 142, "nt1": "///2/288", "nt2": "///2/295", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.891, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.870, "chi2": 178.032, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.057, "C1C1_dist": 11.251, "N1N9_dist": 9.545, "C6C8_dist": 10.565, "CNNC_torsion": 26.099, "hbonds_num": 2, "hbonds_desc": "N1(imino)-N3[3.65],N2(amino)-O2(carbonyl)[3.25]", "interBase_angle": 27.907, "planarity": 0.404, "simple_Shear": -0.294, "simple_Stretch": 0.572, "simple_Buckle": 12.766, "simple_Propeller": 24.816, "bp_simpleParams": [ -0.294, 0.572, -0.914, 12.766, 24.816, 3.144 ], "bp_params": [ -0.301, 0.568, -0.914, 12.321, 25.040, 3.203 ], "frame": { "rmsd": null, "origin": [ 219.193, 152.770, 116.541 ], "x_axis": [ -0.385, 0.221, -0.896 ], "y_axis": [ -0.249, -0.960, -0.129 ], "z_axis": [ -0.889, 0.173, 0.424 ], "quaternion": [ 0.141, -0.536, 0.013, 0.832 ] } }, { "index": 143, "nt1": "///2/312", "nt2": "///2/337", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -107.826, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 55.209, "chi2": -166.867, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.148, "C1C1_dist": 10.585, "N1N9_dist": 8.923, "C6C8_dist": 9.893, "CNNC_torsion": -3.559, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 2.877, "planarity": 0.139, "simple_Shear": -0.190, "simple_Stretch": -0.160, "simple_Buckle": 1.839, "simple_Propeller": 2.212, "bp_simpleParams": [ -0.190, -0.160, 0.657, 1.839, 2.212, 1.797 ], "bp_params": [ -0.188, -0.163, 0.657, 1.807, 2.238, 1.797 ], "frame": { "rmsd": null, "origin": [ 250.904, 142.465, 129.913 ], "x_axis": [ -0.700, -0.712, -0.062 ], "y_axis": [ 0.030, 0.058, -0.998 ], "z_axis": [ 0.714, -0.700, -0.020 ], "quaternion": [ 0.291, -0.256, 0.667, -0.637 ] } }, { "index": 144, "nt1": "///2/314", "nt2": "///2/336", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.387, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.770, "chi2": 179.220, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.164, "C1C1_dist": 10.298, "N1N9_dist": 8.707, "C6C8_dist": 9.758, "CNNC_torsion": -0.859, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.81],O4(carbonyl)-N6(amino)[3.03]", "interBase_angle": 9.458, "planarity": 0.206, "simple_Shear": -0.021, "simple_Stretch": -0.177, "simple_Buckle": 7.951, "simple_Propeller": 5.122, "bp_simpleParams": [ -0.021, -0.177, 0.587, 7.951, 5.122, 5.400 ], "bp_params": [ -0.019, -0.177, 0.587, 7.923, 5.166, 5.393 ], "frame": { "rmsd": null, "origin": [ 253.505, 140.279, 132.677 ], "x_axis": [ -0.500, -0.419, -0.758 ], "y_axis": [ 0.583, 0.485, -0.652 ], "z_axis": [ 0.641, -0.768, 0.002 ], "quaternion": [ 0.497, 0.058, 0.704, -0.504 ] } }, { "index": 145, "nt1": "///2/315", "nt2": "///2/335", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.211, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.251, "chi2": -175.071, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.220, "C1C1_dist": 10.664, "N1N9_dist": 8.937, "C6C8_dist": 9.888, "CNNC_torsion": 0.451, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 2.076, "planarity": 0.036, "simple_Shear": 0.178, "simple_Stretch": -0.138, "simple_Buckle": 1.570, "simple_Propeller": -1.359, "bp_simpleParams": [ 0.178, -0.138, -0.172, 1.570, -1.359, 0.818 ], "bp_params": [ 0.176, -0.140, -0.172, 1.552, -1.379, 0.818 ], "frame": { "rmsd": null, "origin": [ 254.043, 136.650, 134.136 ], "x_axis": [ -0.106, -0.061, -0.993 ], "y_axis": [ 0.837, 0.534, -0.122 ], "z_axis": [ 0.537, -0.843, -0.006 ], "quaternion": [ 0.596, 0.302, 0.641, -0.376 ] } }, { "index": 146, "nt1": "///2/318", "nt2": "///2/333", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.046, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 78.147, "chi2": -157.426, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.683, "C1C1_dist": 10.117, "N1N9_dist": 9.007, "C6C8_dist": 10.339, "CNNC_torsion": -6.870, "hbonds_num": 2, "hbonds_desc": "N1*O6(carbonyl)[2.54],N3-N2(amino)[3.07]", "unusual_base2base_hbonds": 1, "interBase_angle": 3.177, "planarity": 0.357, "simple_Shear": 1.834, "simple_Stretch": 0.814, "simple_Buckle": 1.718, "simple_Propeller": 2.672, "bp_simpleParams": [ 1.834, 0.814, 1.446, 1.718, 2.672, 26.643 ], "bp_params": [ 1.957, 0.445, 1.446, 2.202, 2.290, 26.644 ], "frame": { "rmsd": null, "origin": [ 255.530, 126.776, 133.750 ], "x_axis": [ 0.725, 0.562, -0.398 ], "y_axis": [ 0.514, -0.058, 0.856 ], "z_axis": [ 0.458, -0.825, -0.331 ], "quaternion": [ 0.578, 0.727, 0.370, 0.021 ] } }, { "index": 147, "nt1": "///2/319", "nt2": "///2/332", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -147.135, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.777, "chi2": -170.660, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.397, "C1C1_dist": 10.417, "N1N9_dist": 8.855, "C6C8_dist": 9.880, "CNNC_torsion": -2.571, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.70],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 2.858, "planarity": 0.148, "simple_Shear": 0.238, "simple_Stretch": -0.170, "simple_Buckle": -0.127, "simple_Propeller": 2.855, "bp_simpleParams": [ 0.238, -0.170, 0.619, -0.127, 2.855, 3.700 ], "bp_params": [ 0.235, -0.175, 0.619, -0.072, 2.857, 3.701 ], "frame": { "rmsd": null, "origin": [ 257.040, 124.348, 128.897 ], "x_axis": [ 0.743, 0.589, -0.319 ], "y_axis": [ 0.500, -0.171, 0.849 ], "z_axis": [ 0.445, -0.790, -0.422 ], "quaternion": [ 0.536, 0.764, 0.356, 0.041 ] } }, { "index": 148, "nt1": "///2/320", "nt2": "///2/331", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.606, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.124, "chi2": -168.099, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.065, "C1C1_dist": 10.711, "N1N9_dist": 8.956, "C6C8_dist": 9.893, "CNNC_torsion": -1.233, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 3.908, "planarity": 0.045, "simple_Shear": -0.179, "simple_Stretch": -0.129, "simple_Buckle": 3.877, "simple_Propeller": 0.495, "bp_simpleParams": [ -0.179, -0.129, 0.169, 3.877, 0.495, 0.414 ], "bp_params": [ -0.177, -0.131, 0.169, 3.870, 0.546, 0.414 ], "frame": { "rmsd": null, "origin": [ 258.066, 122.265, 125.787 ], "x_axis": [ 0.887, 0.460, 0.034 ], "y_axis": [ 0.186, -0.424, 0.886 ], "z_axis": [ 0.422, -0.780, -0.462 ], "quaternion": [ 0.500, 0.833, 0.194, 0.137 ] } }, { "index": 149, "nt1": "///2/321", "nt2": "///2/330", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.470, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.635, "chi2": -175.938, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.691, "C1C1_dist": 11.190, "N1N9_dist": 9.089, "C6C8_dist": 9.613, "CNNC_torsion": 2.979, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.58],N3-N1(imino)[3.04],N4(amino)-O6(carbonyl)[2.37]", "interBase_angle": 3.712, "planarity": 0.078, "simple_Shear": 0.557, "simple_Stretch": -0.286, "simple_Buckle": 3.156, "simple_Propeller": -1.954, "bp_simpleParams": [ 0.557, -0.286, -0.417, 3.156, -1.954, -17.442 ], "bp_params": [ 0.541, -0.315, -0.417, 3.048, -2.118, -17.439 ], "frame": { "rmsd": null, "origin": [ 258.411, 120.366, 122.139 ], "x_axis": [ 0.821, 0.102, 0.562 ], "y_axis": [ -0.381, -0.636, 0.671 ], "z_axis": [ 0.426, -0.765, -0.483 ], "quaternion": [ 0.419, 0.857, -0.082, 0.288 ] } }, { "index": 150, "nt1": "///2/322", "nt2": "///2/329", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.340, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.369, "chi2": -143.409, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.009, "C1C1_dist": 9.258, "N1N9_dist": 8.450, "C6C8_dist": 10.021, "CNNC_torsion": -1.627, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[2.74],O2(carbonyl)-N1(imino)[2.29],O2(carbonyl)-N2(amino)[3.24]", "interBase_angle": 5.569, "planarity": 0.086, "simple_Shear": 3.467, "simple_Stretch": 1.262, "simple_Buckle": 5.456, "simple_Propeller": -1.117, "bp_simpleParams": [ 3.467, 1.262, -0.365, 5.456, -1.117, 40.025 ], "bp_params": [ 3.689, -0.071, -0.365, 4.687, -3.007, 40.007 ], "frame": { "rmsd": null, "origin": [ 262.703, 118.014, 122.240 ], "x_axis": [ 0.413, -0.289, 0.863 ], "y_axis": [ -0.801, -0.567, 0.193 ], "z_axis": [ 0.433, -0.771, -0.466 ], "quaternion": [ 0.308, 0.782, -0.349, 0.415 ] } }, { "index": 151, "nt1": "///2/357", "nt2": "///2/405", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.251, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.139, "chi2": -173.795, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.791, "C1C1_dist": 10.650, "N1N9_dist": 8.911, "C6C8_dist": 9.858, "CNNC_torsion": -5.235, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 4.141, "planarity": 0.153, "simple_Shear": 0.186, "simple_Stretch": -0.173, "simple_Buckle": 4.118, "simple_Propeller": 0.428, "bp_simpleParams": [ 0.186, -0.173, 0.488, 4.118, 0.428, 0.927 ], "bp_params": [ 0.183, -0.175, 0.488, 4.124, 0.370, 0.926 ], "frame": { "rmsd": null, "origin": [ 218.650, 189.250, 158.548 ], "x_axis": [ 0.158, -0.192, -0.969 ], "y_axis": [ -0.528, -0.845, 0.082 ], "z_axis": [ -0.834, 0.499, -0.235 ], "quaternion": [ -0.139, 0.748, -0.241, -0.603 ] } }, { "index": 152, "nt1": "///2/358", "nt2": "///2/404", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.698, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.060, "chi2": -176.790, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.066, "C1C1_dist": 10.631, "N1N9_dist": 8.938, "C6C8_dist": 9.903, "CNNC_torsion": -2.101, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 2.835, "planarity": 0.074, "simple_Shear": 0.180, "simple_Stretch": -0.125, "simple_Buckle": 2.794, "simple_Propeller": -0.478, "bp_simpleParams": [ 0.180, -0.125, 0.201, 2.794, -0.478, 1.402 ], "bp_params": [ 0.178, -0.127, 0.201, 2.788, -0.515, 1.402 ], "frame": { "rmsd": null, "origin": [ 217.142, 192.316, 157.014 ], "x_axis": [ -0.158, -0.620, -0.768 ], "y_axis": [ -0.561, -0.584, 0.587 ], "z_axis": [ -0.813, 0.523, -0.255 ], "quaternion": [ 0.025, 0.648, -0.455, -0.610 ] } }, { "index": 153, "nt1": "///2/359", "nt2": "///2/403", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.071, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 74.595, "chi2": -173.890, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.251, "C1C1_dist": 10.491, "N1N9_dist": 9.121, "C6C8_dist": 10.323, "CNNC_torsion": -2.178, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.97],O2(carbonyl)-N2(amino)[3.34],N3(imino)-O6(carbonyl)[3.62]", "interBase_angle": 0.943, "planarity": 0.074, "simple_Shear": 2.336, "simple_Stretch": 0.655, "simple_Buckle": 0.938, "simple_Propeller": -0.096, "bp_simpleParams": [ 2.336, 0.655, 0.331, 0.938, -0.096, 13.630 ], "bp_params": [ 2.424, 0.102, 0.331, 0.891, -0.309, 13.630 ], "frame": { "rmsd": null, "origin": [ 215.053, 194.299, 154.262 ], "x_axis": [ -0.465, -0.836, -0.290 ], "y_axis": [ -0.388, -0.101, 0.916 ], "z_axis": [ -0.795, 0.539, -0.278 ], "quaternion": [ -0.197, -0.478, 0.641, 0.568 ] } }, { "index": 154, "nt1": "///2/360", "nt2": "///2/400", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -77.007, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 4.879, "chi2": -120.474, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 66.848, "C1C1_dist": 9.741, "N1N9_dist": 7.842, "C6C8_dist": 7.767, "CNNC_torsion": 176.028, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.38]", "interBase_angle": 35.484, "planarity": 0.544, "simple_Shear": -5.987, "simple_Stretch": 1.082, "simple_Buckle": -8.021, "simple_Propeller": 34.565, "bp_simpleParams": [ -5.987, 1.082, -1.935, -8.021, 34.565, -53.079 ], "bp_params": [ -4.980, -3.495, -1.935, -30.092, 18.803, -52.134 ], "frame": { "rmsd": null, "origin": [ 207.739, 197.727, 151.699 ], "x_axis": [ -0.704, -0.669, 0.238 ], "y_axis": [ -0.356, 0.622, 0.697 ], "z_axis": [ -0.614, 0.407, -0.676 ], "quaternion": [ -0.246, -0.296, 0.866, 0.318 ] } }, { "index": 155, "nt1": "///2/360", "nt2": "///2/401", "bp": "A-A", "name": "--", "Saenger": "05-V", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -77.007, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 25.660, "chi2": -174.805, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 21.288, "C1C1_dist": 13.216, "N1N9_dist": 10.574, "C6C8_dist": 9.226, "CNNC_torsion": 141.293, "hbonds_num": 1, "hbonds_desc": "N1-N6(amino)[3.93]", "interBase_angle": 23.785, "planarity": 0.316, "simple_Shear": 3.161, "simple_Stretch": 4.163, "simple_Buckle": -8.076, "simple_Propeller": -22.372, "bp_simpleParams": [ 3.161, 4.163, -1.121, -8.076, -22.372, -103.482 ], "bp_params": [ 4.906, 1.806, -1.121, -18.802, -14.568, -103.177 ], "frame": { "rmsd": null, "origin": [ 211.477, 198.500, 148.051 ], "x_axis": [ -0.498, -0.491, 0.715 ], "y_axis": [ -0.036, 0.836, 0.548 ], "z_axis": [ -0.866, 0.247, -0.434 ], "quaternion": [ -0.475, -0.158, 0.832, 0.239 ] } }, { "index": 156, "nt1": "///2/362", "nt2": "///2/402", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.911, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 84.353, "chi2": -160.008, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.725, "C1C1_dist": 8.022, "N1N9_dist": 7.005, "C6C8_dist": 8.554, "CNNC_torsion": 0.476, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*N3[2.90],N3-N4(amino)[3.25]", "unusual_base2base_hbonds": 1, "interBase_angle": 18.890, "planarity": 0.301, "simple_Shear": 2.347, "simple_Stretch": -0.898, "simple_Buckle": -13.149, "simple_Propeller": -13.563, "bp_simpleParams": [ 2.347, -0.898, -1.029, -13.149, -13.563, 31.440 ], "bp_params": [ 2.049, -1.454, -1.029, -16.110, -9.864, 31.256 ], "frame": { "rmsd": null, "origin": [ 213.207, 196.505, 152.106 ], "x_axis": [ -0.424, -0.601, 0.678 ], "y_axis": [ -0.183, 0.789, 0.586 ], "z_axis": [ -0.887, 0.124, -0.444 ], "quaternion": [ -0.480, -0.241, 0.815, 0.218 ] } }, { "index": 157, "nt1": "///2/363", "nt2": "///2/400", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tH.", "DSSR": "tM-.", "intra_chain": true, "chi1": -99.419, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 13.419, "chi2": -120.474, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 85.845, "C1C1_dist": 9.534, "N1N9_dist": 8.082, "C6C8_dist": 8.525, "CNNC_torsion": 12.977, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.54]", "interBase_angle": 53.297, "planarity": 0.734, "simple_Shear": -6.525, "simple_Stretch": 1.128, "simple_Buckle": 19.475, "simple_Propeller": 49.612, "bp_simpleParams": [ -6.525, 1.128, 1.063, 19.475, 49.612, 3.088 ], "bp_params": [ -5.494, -3.696, 1.063, -21.172, 48.912, 3.345 ], "frame": { "rmsd": null, "origin": [ 206.180, 197.150, 149.839 ], "x_axis": [ -0.682, -0.357, 0.638 ], "y_axis": [ 0.039, 0.853, 0.520 ], "z_axis": [ -0.731, 0.380, -0.568 ], "quaternion": [ -0.389, -0.090, 0.881, 0.255 ] } }, { "index": 158, "nt1": "///2/364", "nt2": "///2/396", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.404, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.285, "chi2": -171.242, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.549, "C1C1_dist": 10.082, "N1N9_dist": 8.624, "C6C8_dist": 9.768, "CNNC_torsion": 5.818, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.07],N1-N3(imino)[2.74]", "interBase_angle": 10.154, "planarity": 0.145, "simple_Shear": 0.010, "simple_Stretch": -0.148, "simple_Buckle": -5.090, "simple_Propeller": 8.786, "bp_simpleParams": [ 0.010, -0.148, 0.214, -5.090, 8.786, 8.678 ], "bp_params": [ 0.010, -0.148, 0.214, -5.045, 8.812, 8.695 ], "frame": { "rmsd": null, "origin": [ 210.539, 198.141, 138.760 ], "x_axis": [ -0.325, 0.368, -0.871 ], "y_axis": [ -0.173, 0.883, 0.437 ], "z_axis": [ 0.930, 0.293, -0.223 ], "quaternion": [ 0.578, 0.062, 0.779, 0.234 ] } }, { "index": 159, "nt1": "///2/365", "nt2": "///2/395", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.896, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.670, "chi2": -179.438, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.595, "C1C1_dist": 10.459, "N1N9_dist": 8.834, "C6C8_dist": 9.864, "CNNC_torsion": 5.804, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.69],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 13.966, "planarity": 0.209, "simple_Shear": 0.277, "simple_Stretch": -0.164, "simple_Buckle": -4.295, "simple_Propeller": 13.289, "bp_simpleParams": [ 0.277, -0.164, 0.596, -4.295, 13.289, 5.688 ], "bp_params": [ 0.274, -0.170, 0.596, -4.003, 13.380, 5.723 ], "frame": { "rmsd": null, "origin": [ 213.771, 197.451, 136.517 ], "x_axis": [ -0.435, 0.751, -0.496 ], "y_axis": [ 0.021, 0.559, 0.829 ], "z_axis": [ 0.900, 0.350, -0.259 ], "quaternion": [ 0.465, 0.257, 0.751, 0.393 ] } }, { "index": 160, "nt1": "///2/366", "nt2": "///2/394", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.958, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.020, "chi2": 155.269, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.068, "C1C1_dist": 10.577, "N1N9_dist": 8.768, "C6C8_dist": 9.610, "CNNC_torsion": 10.131, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.99],N3(imino)-O6(carbonyl)[2.84]", "interBase_angle": 23.288, "planarity": 0.343, "simple_Shear": 1.984, "simple_Stretch": -0.234, "simple_Buckle": -7.112, "simple_Propeller": 22.175, "bp_simpleParams": [ 1.984, -0.234, 0.852, -7.112, 22.175, 0.552 ], "bp_params": [ 1.903, -0.607, 0.852, -2.685, 23.132, 0.564 ], "frame": { "rmsd": null, "origin": [ 216.093, 198.292, 133.413 ], "x_axis": [ -0.389, 0.895, 0.217 ], "y_axis": [ 0.365, -0.067, 0.928 ], "z_axis": [ 0.846, 0.440, -0.301 ], "quaternion": [ 0.247, 0.495, 0.637, 0.537 ] } }, { "index": 161, "nt1": "///2/370", "nt2": "///2/373", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -129.511, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 61.846, "chi2": -169.472, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 21.314, "C1C1_dist": 11.616, "N1N9_dist": 9.583, "C6C8_dist": 9.326, "CNNC_torsion": -12.309, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O6(carbonyl)[2.65],N2(amino)-N7[3.05]", "interBase_angle": 10.294, "planarity": 0.320, "simple_Shear": -2.347, "simple_Stretch": 2.240, "simple_Buckle": -9.211, "simple_Propeller": -4.597, "bp_simpleParams": [ -2.347, 2.240, 1.378, -9.211, -4.597, -97.020 ], "bp_params": [ 1.402, 2.925, 1.378, -7.221, 7.337, -97.023 ], "frame": { "rmsd": null, "origin": [ 221.859, 191.795, 124.264 ], "x_axis": [ 0.755, 0.650, -0.082 ], "y_axis": [ 0.209, -0.120, 0.970 ], "z_axis": [ 0.621, -0.750, -0.227 ], "quaternion": [ 0.593, 0.725, 0.296, 0.186 ] } }, { "index": 162, "nt1": "///2/370", "nt2": "///2/391", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "--", "DSSR": "--", "intra_chain": true, "chi1": -129.511, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 14.355, "chi2": -167.080, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 1.915, "C1C1_dist": 13.755, "N1N9_dist": 10.863, "C6C8_dist": 9.614, "CNNC_torsion": -148.601, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.44]", "interBase_angle": 7.617, "planarity": 0.213, "simple_Shear": 0.874, "simple_Stretch": 2.846, "simple_Buckle": -5.133, "simple_Propeller": -5.628, "bp_simpleParams": [ 0.874, 2.846, 0.828, -5.133, -5.628, -95.170 ], "bp_params": [ 1.218, 2.716, 0.828, -5.788, -4.952, -95.150 ], "frame": { "rmsd": null, "origin": [ 222.126, 191.528, 124.289 ], "x_axis": [ 0.681, 0.728, -0.077 ], "y_axis": [ 0.214, -0.098, 0.972 ], "z_axis": [ 0.700, -0.678, -0.223 ], "quaternion": [ 0.583, 0.707, 0.333, 0.220 ] } }, { "index": 163, "nt1": "///2/371", "nt2": "///2/393", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 163.510, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.730, "chi2": -129.113, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 69.607, "C1C1_dist": 11.290, "N1N9_dist": 9.769, "C6C8_dist": 10.866, "CNNC_torsion": -0.791, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 12.532, "planarity": 0.172, "simple_Shear": -1.770, "simple_Stretch": 1.169, "simple_Buckle": -11.306, "simple_Propeller": 5.406, "bp_simpleParams": [ -1.770, 1.169, 0.080, -11.306, 5.406, 9.444 ], "bp_params": [ -1.947, 0.843, 0.080, -12.079, 3.339, 9.396 ], "frame": { "rmsd": null, "origin": [ 220.160, 196.615, 127.427 ], "x_axis": [ 0.715, 0.343, -0.609 ], "y_axis": [ 0.694, -0.237, 0.680 ], "z_axis": [ 0.089, -0.909, -0.408 ], "quaternion": [ 0.517, 0.768, 0.338, -0.169 ] } }, { "index": 164, "nt1": "///2/372", "nt2": "///2/392", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.609, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.281, "chi2": -165.844, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.995, "C1C1_dist": 10.346, "N1N9_dist": 8.785, "C6C8_dist": 9.846, "CNNC_torsion": 1.772, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.81],O4(carbonyl)-N6(amino)[3.05]", "interBase_angle": 5.421, "planarity": 0.087, "simple_Shear": 0.003, "simple_Stretch": -0.098, "simple_Buckle": 2.009, "simple_Propeller": 5.035, "bp_simpleParams": [ 0.003, -0.098, 0.212, 2.009, 5.035, 5.057 ], "bp_params": [ 0.004, -0.098, 0.212, 1.985, 5.044, 5.061 ], "frame": { "rmsd": null, "origin": [ 219.072, 193.671, 125.392 ], "x_axis": [ 0.980, 0.198, -0.001 ], "y_axis": [ 0.072, -0.350, 0.934 ], "z_axis": [ 0.185, -0.916, -0.357 ], "quaternion": [ 0.564, 0.820, 0.082, 0.056 ] } }, { "index": 165, "nt1": "///2/373", "nt2": "///2/391", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.472, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.073, "chi2": -167.080, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.956, "C1C1_dist": 10.596, "N1N9_dist": 8.901, "C6C8_dist": 9.869, "CNNC_torsion": -1.703, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 12.243, "planarity": 0.171, "simple_Shear": -0.210, "simple_Stretch": -0.158, "simple_Buckle": -8.190, "simple_Propeller": -9.100, "bp_simpleParams": [ -0.210, -0.158, -0.710, -8.190, -9.100, 2.555 ], "bp_params": [ -0.208, -0.161, -0.710, -8.066, -9.210, 2.557 ], "frame": { "rmsd": null, "origin": [ 220.863, 191.765, 123.083 ], "x_axis": [ 0.671, 0.345, 0.656 ], "y_axis": [ -0.373, -0.608, 0.701 ], "z_axis": [ 0.641, -0.715, -0.280 ], "quaternion": [ 0.442, 0.800, -0.009, 0.406 ] } }, { "index": 166, "nt1": "///2/374", "nt2": "///2/385", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -170.719, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.218, "chi2": 60.431, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 60.379, "C1C1_dist": 11.965, "N1N9_dist": 9.970, "C6C8_dist": 9.699, "CNNC_torsion": -13.123, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.55],O6(carbonyl)-N1(imino)[3.07]", "interBase_angle": 31.392, "planarity": 0.454, "simple_Shear": -2.600, "simple_Stretch": 2.816, "simple_Buckle": 9.931, "simple_Propeller": 29.779, "bp_simpleParams": [ -2.600, 2.816, -0.194, 9.931, 29.779, 94.496 ], "bp_params": [ -1.688, -3.441, -0.194, -31.347, -1.671, 92.335 ], "frame": { "rmsd": null, "origin": [ 223.847, 189.921, 121.751 ], "x_axis": [ 0.785, 0.490, 0.379 ], "y_axis": [ -0.130, -0.469, 0.874 ], "z_axis": [ 0.606, -0.735, -0.305 ], "quaternion": [ 0.503, 0.800, 0.113, 0.308 ] } }, { "index": 167, "nt1": "///2/374", "nt2": "///2/390", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.719, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.135, "chi2": -149.316, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.638, "C1C1_dist": 10.754, "N1N9_dist": 8.950, "C6C8_dist": 9.813, "CNNC_torsion": 10.270, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 15.994, "planarity": 0.213, "simple_Shear": -0.098, "simple_Stretch": -0.167, "simple_Buckle": -15.425, "simple_Propeller": 4.228, "bp_simpleParams": [ -0.098, -0.167, -0.955, -15.425, 4.228, -2.368 ], "bp_params": [ -0.097, -0.168, -0.955, -15.462, 4.090, -2.348 ], "frame": { "rmsd": null, "origin": [ 223.605, 189.972, 119.963 ], "x_axis": [ 0.347, 0.110, 0.931 ], "y_axis": [ -0.699, -0.631, 0.335 ], "z_axis": [ 0.625, -0.768, -0.142 ], "quaternion": [ 0.379, 0.728, -0.202, 0.534 ] } }, { "index": 168, "nt1": "///2/375", "nt2": "///2/389", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.834, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.624, "chi2": -159.782, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.830, "C1C1_dist": 10.681, "N1N9_dist": 8.934, "C6C8_dist": 9.860, "CNNC_torsion": 10.518, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.87],O4(carbonyl)-N6(amino)[3.01]", "interBase_angle": 15.953, "planarity": 0.196, "simple_Shear": -0.070, "simple_Stretch": -0.067, "simple_Buckle": -7.336, "simple_Propeller": 14.166, "bp_simpleParams": [ -0.070, -0.067, -0.097, -7.336, 14.166, -0.636 ], "bp_params": [ -0.069, -0.068, -0.097, -7.542, 14.058, -0.640 ], "frame": { "rmsd": null, "origin": [ 226.702, 188.161, 119.253 ], "x_axis": [ -0.145, -0.106, 0.984 ], "y_axis": [ -0.839, -0.513, -0.179 ], "z_axis": [ 0.524, -0.852, -0.014 ], "quaternion": [ 0.286, 0.588, -0.402, 0.641 ] } }, { "index": 169, "nt1": "///2/376", "nt2": "///2/388", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.229, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.762, "chi2": -166.993, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.536, "C1C1_dist": 10.736, "N1N9_dist": 8.943, "C6C8_dist": 9.850, "CNNC_torsion": -5.296, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.88]", "interBase_angle": 13.921, "planarity": 0.155, "simple_Shear": 0.051, "simple_Stretch": -0.061, "simple_Buckle": -9.644, "simple_Propeller": -10.040, "bp_simpleParams": [ 0.051, -0.061, -0.371, -9.644, -10.040, -0.371 ], "bp_params": [ 0.051, -0.062, -0.371, -9.784, -9.904, -0.371 ], "frame": { "rmsd": null, "origin": [ 228.652, 185.899, 120.672 ], "x_axis": [ -0.812, -0.010, 0.584 ], "y_axis": [ -0.500, -0.506, -0.703 ], "z_axis": [ 0.302, -0.863, 0.405 ], "quaternion": [ 0.149, 0.269, -0.475, 0.825 ] } }, { "index": 170, "nt1": "///2/377", "nt2": "///2/387", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.404, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.966, "chi2": -149.427, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.992, "C1C1_dist": 10.709, "N1N9_dist": 8.908, "C6C8_dist": 9.823, "CNNC_torsion": -1.879, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 12.431, "planarity": 0.155, "simple_Shear": -0.211, "simple_Stretch": -0.181, "simple_Buckle": -9.626, "simple_Propeller": -7.866, "bp_simpleParams": [ -0.211, -0.181, -0.660, -9.626, -7.866, 0.928 ], "bp_params": [ -0.209, -0.184, -0.660, -9.527, -7.986, 0.927 ], "frame": { "rmsd": null, "origin": [ 230.273, 183.610, 123.504 ], "x_axis": [ -0.952, -0.214, 0.217 ], "y_axis": [ -0.111, -0.419, -0.901 ], "z_axis": [ 0.284, -0.882, 0.375 ], "quaternion": [ -0.031, 0.151, -0.538, 0.829 ] } }, { "index": 171, "nt1": "///2/378", "nt2": "///2/386", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.286, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.646, "chi2": -165.332, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.068, "C1C1_dist": 10.850, "N1N9_dist": 8.854, "C6C8_dist": 9.639, "CNNC_torsion": -2.927, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N4(amino)[3.48]", "interBase_angle": 18.156, "planarity": 0.189, "simple_Shear": -1.199, "simple_Stretch": -0.235, "simple_Buckle": -18.156, "simple_Propeller": -0.079, "bp_simpleParams": [ -1.199, -0.235, -0.325, -18.156, -0.079, -11.802 ], "bp_params": [ -1.162, -0.376, -0.325, -18.017, -2.246, -11.660 ], "frame": { "rmsd": null, "origin": [ 232.030, 181.076, 126.202 ], "x_axis": [ -0.854, -0.370, -0.365 ], "y_axis": [ 0.432, -0.116, -0.894 ], "z_axis": [ 0.289, -0.922, 0.259 ], "quaternion": [ -0.269, -0.025, -0.608, 0.746 ] } }, { "index": 172, "nt1": "///2/380", "nt2": "///2/383", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -165.799, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 68.818, "chi2": -128.361, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.879, "C1C1_dist": 10.727, "N1N9_dist": 9.386, "C6C8_dist": 9.212, "CNNC_torsion": 160.796, "hbonds_num": 3, "hbonds_desc": "N1(imino)-OP2[2.89],N2(amino)-OP2[2.58],N2(amino)-N7[3.61]", "interBase_angle": 32.588, "planarity": 0.454, "simple_Shear": 7.371, "simple_Stretch": 6.991, "simple_Buckle": -32.382, "simple_Propeller": -3.663, "bp_simpleParams": [ 7.371, 6.991, -0.570, -32.382, -3.663, -76.509 ], "bp_params": [ 8.716, -5.219, -0.570, -12.148, 30.239, -78.168 ], "frame": { "rmsd": null, "origin": [ 228.735, 174.455, 129.721 ], "x_axis": [ 0.855, -0.051, -0.516 ], "y_axis": [ 0.518, 0.062, 0.853 ], "z_axis": [ -0.011, -0.997, 0.079 ], "quaternion": [ 0.706, 0.655, 0.179, -0.201 ] } }, { "index": 173, "nt1": "///2/385", "nt2": "///2/390", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "--", "DSSR": "--", "intra_chain": true, "chi1": 60.431, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 18.844, "chi2": -149.316, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.216, "C1C1_dist": 14.052, "N1N9_dist": 11.202, "C6C8_dist": 10.000, "CNNC_torsion": -73.406, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.81]", "interBase_angle": 18.998, "planarity": 0.320, "simple_Shear": 1.247, "simple_Stretch": 3.251, "simple_Buckle": 18.589, "simple_Propeller": -3.922, "bp_simpleParams": [ 1.247, 3.251, -0.957, 18.589, -3.922, -93.106 ], "bp_params": [ 1.784, 2.990, -0.957, 17.657, -7.011, -92.531 ], "frame": { "rmsd": null, "origin": [ 224.103, 189.507, 121.756 ], "x_axis": [ 0.736, 0.535, 0.414 ], "y_axis": [ -0.062, -0.556, 0.829 ], "z_axis": [ 0.674, -0.635, -0.377 ], "quaternion": [ 0.448, 0.817, 0.145, 0.333 ] } }, { "index": 174, "nt1": "///2/409", "nt2": "///2/431", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.895, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.387, "chi2": -164.982, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.624, "C1C1_dist": 10.684, "N1N9_dist": 8.947, "C6C8_dist": 9.886, "CNNC_torsion": 4.110, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 2.402, "planarity": 0.086, "simple_Shear": 0.154, "simple_Stretch": -0.149, "simple_Buckle": 2.369, "simple_Propeller": -0.399, "bp_simpleParams": [ 0.154, -0.149, -0.445, 2.369, -0.399, 0.346 ], "bp_params": [ 0.153, -0.150, -0.445, 2.364, -0.425, 0.346 ], "frame": { "rmsd": null, "origin": [ 227.904, 172.287, 158.042 ], "x_axis": [ 0.480, -0.463, 0.745 ], "y_axis": [ 0.009, 0.852, 0.523 ], "z_axis": [ -0.877, -0.245, 0.413 ], "quaternion": [ 0.828, 0.232, -0.490, -0.142 ] } }, { "index": 175, "nt1": "///2/410", "nt2": "///2/430", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.577, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.140, "chi2": -163.695, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.170, "C1C1_dist": 10.671, "N1N9_dist": 8.941, "C6C8_dist": 9.888, "CNNC_torsion": 3.651, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 4.381, "planarity": 0.058, "simple_Shear": -0.205, "simple_Stretch": -0.136, "simple_Buckle": -0.487, "simple_Propeller": 4.354, "bp_simpleParams": [ -0.205, -0.136, -0.014, -0.487, 4.354, 0.729 ], "bp_params": [ -0.202, -0.139, -0.014, -0.556, 4.346, 0.730 ], "frame": { "rmsd": null, "origin": [ 225.094, 169.858, 158.882 ], "x_axis": [ 0.618, 0.113, 0.778 ], "y_axis": [ -0.262, 0.963, 0.069 ], "z_axis": [ -0.742, -0.247, 0.624 ], "quaternion": [ 0.895, 0.088, -0.425, 0.105 ] } }, { "index": 176, "nt1": "///2/411", "nt2": "///2/429", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.953, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.394, "chi2": -162.304, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.932, "C1C1_dist": 10.583, "N1N9_dist": 9.048, "C6C8_dist": 10.185, "CNNC_torsion": -1.985, "hbonds_num": 4, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.44],N1(imino)-N3[3.09],N2(amino)-O2(carbonyl)[2.61],N2(amino)-N3[3.11]", "interBase_angle": 5.088, "planarity": 0.077, "simple_Shear": 0.400, "simple_Stretch": 0.197, "simple_Buckle": -1.177, "simple_Propeller": -4.950, "bp_simpleParams": [ 0.400, 0.197, -0.208, -1.177, -4.950, 9.288 ], "bp_params": [ 0.408, 0.179, -0.208, -1.401, -4.892, 9.296 ], "frame": { "rmsd": null, "origin": [ 223.940, 167.927, 161.987 ], "x_axis": [ 0.465, 0.646, 0.606 ], "y_axis": [ -0.618, 0.727, -0.300 ], "z_axis": [ -0.634, -0.235, 0.736 ], "quaternion": [ 0.856, -0.019, -0.362, 0.369 ] } }, { "index": 177, "nt1": "///2/412", "nt2": "///2/425", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -165.632, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 22.090, "chi2": -169.387, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 82.135, "C1C1_dist": 10.920, "N1N9_dist": 9.565, "C6C8_dist": 9.426, "CNNC_torsion": 170.678, "hbonds_num": 2, "hbonds_desc": "OP2-N2(amino)[2.77],N7-N2(amino)[3.57]", "interBase_angle": 4.023, "planarity": 0.121, "simple_Shear": -8.191, "simple_Stretch": 5.653, "simple_Buckle": 4.019, "simple_Propeller": 0.176, "bp_simpleParams": [ -8.191, 5.653, -0.666, 4.019, 0.176, -49.158 ], "bp_params": [ -8.544, -5.102, -0.666, 1.510, 3.729, -49.178 ], "frame": { "rmsd": null, "origin": [ 219.674, 169.633, 164.258 ], "x_axis": [ -0.282, 0.948, 0.147 ], "y_axis": [ -0.698, -0.098, -0.709 ], "z_axis": [ -0.658, -0.303, 0.690 ], "quaternion": [ 0.572, -0.177, -0.352, 0.719 ] } }, { "index": 178, "nt1": "///2/412", "nt2": "///2/812", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -165.632, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 116.215, "chi2": -179.466, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 3.763, "C1C1_dist": 9.604, "N1N9_dist": 8.894, "C6C8_dist": 9.762, "CNNC_torsion": 168.023, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.98],N2(amino)-N1[2.90],N3-N6(amino)[2.96]", "interBase_angle": 0.981, "planarity": 0.073, "simple_Shear": 2.051, "simple_Stretch": 4.707, "simple_Buckle": -0.558, "simple_Propeller": 0.807, "bp_simpleParams": [ 2.051, 4.707, -0.383, -0.558, 0.807, -67.156 ], "bp_params": [ 3.609, -3.653, -0.383, 0.957, 0.219, -67.154 ], "frame": { "rmsd": null, "origin": [ 222.230, 163.752, 164.008 ], "x_axis": [ -0.370, 0.929, 0.015 ], "y_axis": [ -0.652, -0.248, -0.716 ], "z_axis": [ -0.662, -0.274, 0.698 ], "quaternion": [ 0.520, -0.213, -0.326, 0.761 ] } }, { "index": 179, "nt1": "///2/413", "nt2": "///2/424", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.217, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.449, "chi2": -164.386, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.847, "C1C1_dist": 10.698, "N1N9_dist": 8.926, "C6C8_dist": 9.841, "CNNC_torsion": 4.491, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 6.844, "planarity": 0.130, "simple_Shear": -0.189, "simple_Stretch": -0.190, "simple_Buckle": -6.647, "simple_Propeller": -1.629, "bp_simpleParams": [ -0.189, -0.190, -0.700, -6.647, -1.629, -0.008 ], "bp_params": [ -0.186, -0.192, -0.700, -6.625, -1.716, -0.008 ], "frame": { "rmsd": null, "origin": [ 215.648, 172.832, 167.540 ], "x_axis": [ -0.710, 0.348, -0.612 ], "y_axis": [ -0.090, -0.907, -0.412 ], "z_axis": [ -0.699, -0.238, 0.675 ], "quaternion": [ 0.121, -0.361, -0.179, 0.907 ] } }, { "index": 180, "nt1": "///2/414", "nt2": "///2/423", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.710, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.191, "chi2": -163.641, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.558, "C1C1_dist": 10.522, "N1N9_dist": 8.843, "C6C8_dist": 9.814, "CNNC_torsion": 7.726, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.00],N1-N3(imino)[2.84]", "interBase_angle": 9.583, "planarity": 0.140, "simple_Shear": 0.079, "simple_Stretch": -0.125, "simple_Buckle": -8.800, "simple_Propeller": 3.793, "bp_simpleParams": [ 0.079, -0.125, -0.651, -8.800, 3.793, 1.112 ], "bp_params": [ 0.078, -0.125, -0.651, -8.757, 3.891, 1.110 ], "frame": { "rmsd": null, "origin": [ 213.235, 173.653, 170.580 ], "x_axis": [ -0.612, -0.219, -0.760 ], "y_axis": [ 0.344, -0.939, -0.006 ], "z_axis": [ -0.712, -0.265, 0.650 ], "quaternion": [ -0.157, -0.411, -0.076, 0.895 ] } }, { "index": 181, "nt1": "///2/415", "nt2": "///2/422", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.837, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.065, "chi2": -165.685, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.063, "C1C1_dist": 10.703, "N1N9_dist": 8.928, "C6C8_dist": 9.843, "CNNC_torsion": 10.658, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.86]", "interBase_angle": 10.616, "planarity": 0.150, "simple_Shear": 0.121, "simple_Stretch": -0.106, "simple_Buckle": -2.842, "simple_Propeller": 10.229, "bp_simpleParams": [ 0.121, -0.106, -0.406, -2.842, 10.229, -1.433 ], "bp_params": [ 0.119, -0.108, -0.406, -2.673, 10.274, -1.438 ], "frame": { "rmsd": null, "origin": [ 210.214, 174.257, 172.613 ], "x_axis": [ -0.306, -0.646, -0.699 ], "y_axis": [ 0.605, -0.699, 0.380 ], "z_axis": [ -0.734, -0.307, 0.605 ], "quaternion": [ -0.387, -0.444, 0.023, 0.808 ] } }, { "index": 182, "nt1": "///2/416", "nt2": "///2/421", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.720, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 75.401, "chi2": 175.485, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.970, "C1C1_dist": 10.522, "N1N9_dist": 9.002, "C6C8_dist": 9.999, "CNNC_torsion": 10.294, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.89],N3(imino)-O6(carbonyl)[3.19]", "interBase_angle": 17.146, "planarity": 0.239, "simple_Shear": 3.134, "simple_Stretch": 0.549, "simple_Buckle": 5.048, "simple_Propeller": 16.386, "bp_simpleParams": [ 3.134, 0.549, -0.133, 5.048, 16.386, 6.110 ], "bp_params": [ 3.148, -0.465, -0.133, 9.923, 13.983, 6.133 ], "frame": { "rmsd": null, "origin": [ 206.999, 172.497, 173.094 ], "x_axis": [ 0.233, -0.921, -0.311 ], "y_axis": [ 0.621, -0.105, 0.777 ], "z_axis": [ -0.748, -0.374, 0.548 ], "quaternion": [ 0.647, 0.444, -0.169, -0.596 ] } }, { "index": 183, "nt1": "///2/419", "nt2": "///2/662", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -165.179, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.676, "chi2": -126.615, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 18.369, "C1C1_dist": 11.790, "N1N9_dist": 9.691, "C6C8_dist": 9.493, "CNNC_torsion": 11.285, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O6(carbonyl)[2.36],N2(amino)-N7[2.92]", "interBase_angle": 20.976, "planarity": 0.314, "simple_Shear": -2.223, "simple_Stretch": 2.134, "simple_Buckle": 2.402, "simple_Propeller": 20.838, "bp_simpleParams": [ -2.223, 2.134, -1.153, 2.402, 20.838, -102.535 ], "bp_params": [ 1.405, 2.742, -1.153, 20.645, 3.715, -101.650 ], "frame": { "rmsd": null, "origin": [ 196.465, 177.883, 174.680 ], "x_axis": [ 0.699, -0.649, 0.301 ], "y_axis": [ -0.538, -0.754, -0.376 ], "z_axis": [ 0.471, 0.101, -0.876 ], "quaternion": [ -0.131, 0.912, -0.325, 0.211 ] } }, { "index": 184, "nt1": "///2/420", "nt2": "///2/660", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -169.063, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 143.791, "chi2": -164.321, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.861, "C1C1_dist": 7.954, "N1N9_dist": 7.950, "C6C8_dist": 9.483, "CNNC_torsion": 21.467, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N3[2.55],O2'(hydroxyl)-N4(amino)[3.34],N3-N4(amino)[3.79]", "interBase_angle": 12.706, "planarity": 0.333, "simple_Shear": 5.680, "simple_Stretch": 3.346, "simple_Buckle": -10.752, "simple_Propeller": 6.771, "bp_simpleParams": [ 5.680, 3.346, -2.213, -10.752, 6.771, 68.650 ], "bp_params": [ 6.410, -1.541, -2.213, -3.037, 12.338, 68.941 ], "frame": { "rmsd": null, "origin": [ 199.443, 176.820, 171.438 ], "x_axis": [ 0.595, -0.197, 0.779 ], "y_axis": [ -0.083, -0.979, -0.184 ], "z_axis": [ 0.800, 0.045, -0.599 ], "quaternion": [ -0.064, 0.891, -0.079, 0.443 ] } }, { "index": 185, "nt1": "///2/420", "nt2": "///2/661", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -169.063, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 130.243, "chi2": -145.003, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.367, "C1C1_dist": 5.898, "N1N9_dist": 6.221, "C6C8_dist": 8.315, "CNNC_torsion": 62.789, "hbonds_num": 2, "hbonds_desc": "N2(amino)-O4(carbonyl)[3.51],N3-N3(imino)[3.67]", "interBase_angle": 36.739, "planarity": 0.552, "simple_Shear": 2.790, "simple_Stretch": 3.265, "simple_Buckle": -23.396, "simple_Propeller": 28.326, "bp_simpleParams": [ 2.790, 3.265, -0.830, -23.396, 28.326, 109.077 ], "bp_params": [ 4.058, 1.407, -0.830, -5.744, 36.287, 111.746 ], "frame": { "rmsd": null, "origin": [ 199.190, 177.238, 173.045 ], "x_axis": [ 0.749, 0.171, 0.640 ], "y_axis": [ 0.125, -0.985, 0.116 ], "z_axis": [ 0.650, -0.007, -0.760 ], "quaternion": [ 0.033, 0.935, 0.079, 0.345 ] } }, { "index": 186, "nt1": "///2/429", "nt2": "///2/811", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -162.304, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 134.036, "chi2": 175.389, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 34.859, "C1C1_dist": 9.458, "N1N9_dist": 9.279, "C6C8_dist": 10.658, "CNNC_torsion": -5.795, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.67],O2(carbonyl)-N6(amino)[3.34]", "interBase_angle": 4.214, "planarity": 0.059, "simple_Shear": 5.788, "simple_Stretch": 4.377, "simple_Buckle": 3.895, "simple_Propeller": -1.609, "bp_simpleParams": [ 5.788, 4.377, 0.081, 3.895, -1.609, 61.928 ], "bp_params": [ 7.232, -0.592, 0.081, 1.833, -3.794, 61.949 ], "frame": { "rmsd": null, "origin": [ 223.522, 164.332, 160.669 ], "x_axis": [ 0.142, 0.901, 0.410 ], "y_axis": [ 0.769, -0.362, 0.528 ], "z_axis": [ 0.624, 0.240, -0.744 ], "quaternion": [ 0.096, 0.750, 0.557, 0.345 ] } }, { "index": 187, "nt1": "///2/434", "nt2": "///2/473", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -147.915, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 83.564, "chi2": -174.232, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.346, "C1C1_dist": 8.690, "N1N9_dist": 8.255, "C6C8_dist": 10.517, "CNNC_torsion": 163.226, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.55],N2(amino)-N3[2.80]", "interBase_angle": 17.382, "planarity": 0.230, "simple_Shear": 6.808, "simple_Stretch": 3.692, "simple_Buckle": 12.258, "simple_Propeller": -12.324, "bp_simpleParams": [ 6.808, 3.692, -0.226, 12.258, -12.324, -155.846 ], "bp_params": [ -2.224, -7.419, -0.226, -17.381, 0.094, -155.574 ], "frame": { "rmsd": null, "origin": [ 239.453, 176.859, 159.008 ], "x_axis": [ -0.039, 0.373, -0.927 ], "y_axis": [ 0.498, 0.812, 0.306 ], "z_axis": [ 0.866, -0.449, -0.218 ], "quaternion": [ 0.623, 0.303, 0.719, -0.050 ] } }, { "index": 188, "nt1": "///2/436", "nt2": "///2/457", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.410, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.629, "chi2": -140.597, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.476, "C1C1_dist": 10.760, "N1N9_dist": 8.884, "C6C8_dist": 9.584, "CNNC_torsion": 13.457, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.77],N1(imino)-N3[2.98],N2(amino)-O2(carbonyl)[2.96]", "interBase_angle": 18.482, "planarity": 0.336, "simple_Shear": 0.088, "simple_Stretch": -0.451, "simple_Buckle": -18.482, "simple_Propeller": 0.090, "bp_simpleParams": [ 0.088, -0.451, -1.769, -18.482, 0.090, -7.969 ], "bp_params": [ 0.081, -0.452, -1.769, -18.478, 0.368, -7.866 ], "frame": { "rmsd": null, "origin": [ 249.945, 188.222, 155.310 ], "x_axis": [ 0.751, -0.615, -0.241 ], "y_axis": [ -0.555, -0.785, 0.275 ], "z_axis": [ -0.358, -0.073, -0.931 ], "quaternion": [ 0.093, 0.931, -0.314, -0.161 ] } }, { "index": 189, "nt1": "///2/437", "nt2": "///2/456", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -140.693, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.889, "chi2": -141.942, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.497, "C1C1_dist": 10.718, "N1N9_dist": 8.826, "C6C8_dist": 9.600, "CNNC_torsion": 14.594, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.80],N1(imino)-N3[3.00],N2(amino)-O2(carbonyl)[2.98]", "interBase_angle": 7.939, "planarity": 0.394, "simple_Shear": -0.068, "simple_Stretch": -0.512, "simple_Buckle": 6.097, "simple_Propeller": 5.084, "bp_simpleParams": [ -0.068, -0.512, -1.495, 6.097, 5.084, -7.079 ], "bp_params": [ -0.067, -0.512, -1.495, 6.082, 5.102, -7.076 ], "frame": { "rmsd": null, "origin": [ 248.758, 188.135, 152.659 ], "x_axis": [ 0.486, -0.874, -0.002 ], "y_axis": [ -0.811, -0.452, 0.371 ], "z_axis": [ -0.325, -0.179, -0.929 ], "quaternion": [ 0.162, 0.847, -0.497, -0.096 ] } }, { "index": 190, "nt1": "///2/437", "nt2": "///2/457", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -140.693, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.907, "chi2": -140.597, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.156, "C1C1_dist": 9.705, "N1N9_dist": 8.409, "C6C8_dist": 9.625, "CNNC_torsion": -3.471, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.15],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.57]", "interBase_angle": 14.378, "planarity": 0.449, "simple_Shear": -0.347, "simple_Stretch": -0.367, "simple_Buckle": -8.714, "simple_Propeller": 11.436, "bp_simpleParams": [ -0.347, -0.367, 1.297, -8.714, 11.436, 16.383 ], "bp_params": [ -0.335, -0.379, 1.297, -9.079, 11.149, 16.410 ], "frame": { "rmsd": null, "origin": [ 249.332, 188.209, 153.908 ], "x_axis": [ 0.632, -0.766, -0.119 ], "y_axis": [ -0.728, -0.639, 0.247 ], "z_axis": [ -0.265, -0.069, -0.962 ], "quaternion": [ 0.088, 0.899, -0.416, -0.107 ] } }, { "index": 191, "nt1": "///2/438", "nt2": "///2/455", "bp": "G+A", "name": "--", "Saenger": "09-IX", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 21.082, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 37.348, "chi2": 167.918, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.667, "C1C1_dist": 11.775, "N1N9_dist": 9.441, "C6C8_dist": 8.561, "CNNC_torsion": 35.964, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N6(amino)[2.94]", "interBase_angle": 24.966, "planarity": 0.425, "simple_Shear": -4.785, "simple_Stretch": 1.790, "simple_Buckle": -24.963, "simple_Propeller": -0.443, "bp_simpleParams": [ -4.785, 1.790, 1.399, -24.963, -0.443, 112.380 ], "bp_params": [ 1.287, -4.944, 1.399, 14.707, -20.175, 112.762 ], "frame": { "rmsd": null, "origin": [ 248.090, 185.714, 150.029 ], "x_axis": [ 0.646, -0.757, 0.096 ], "y_axis": [ 0.725, 0.569, -0.388 ], "z_axis": [ 0.239, 0.320, 0.917 ], "quaternion": [ 0.885, -0.200, 0.041, -0.419 ] } }, { "index": 192, "nt1": "///2/438", "nt2": "///2/456", "bp": "G+C", "name": "~Hoogsteen", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 21.082, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 51.738, "chi2": -141.942, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.941, "C1C1_dist": 8.816, "N1N9_dist": 7.115, "C6C8_dist": 6.404, "CNNC_torsion": -7.620, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.10]", "interBase_angle": 24.066, "planarity": 0.400, "simple_Shear": -3.282, "simple_Stretch": 1.761, "simple_Buckle": -18.765, "simple_Propeller": 15.068, "bp_simpleParams": [ -3.282, 1.761, -1.698, -18.765, 15.068, 67.579 ], "bp_params": [ 0.605, -3.676, -1.698, -0.468, -24.062, 68.760 ], "frame": { "rmsd": null, "origin": [ 247.602, 185.949, 151.875 ], "x_axis": [ 0.873, -0.483, -0.057 ], "y_axis": [ 0.438, 0.831, -0.342 ], "z_axis": [ 0.213, 0.274, 0.938 ], "quaternion": [ 0.954, -0.161, 0.071, -0.241 ] } }, { "index": 193, "nt1": "///2/439", "nt2": "///2/454", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.451, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.269, "chi2": -157.894, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.097, "C1C1_dist": 10.494, "N1N9_dist": 8.870, "C6C8_dist": 9.878, "CNNC_torsion": -6.454, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.03],N1-N3(imino)[2.85]", "interBase_angle": 6.232, "planarity": 0.088, "simple_Shear": 0.052, "simple_Stretch": -0.071, "simple_Buckle": -2.197, "simple_Propeller": -5.832, "bp_simpleParams": [ 0.052, -0.071, 0.140, -2.197, -5.832, 2.447 ], "bp_params": [ 0.052, -0.071, 0.140, -2.257, -5.809, 2.449 ], "frame": { "rmsd": null, "origin": [ 249.945, 183.138, 146.642 ], "x_axis": [ -0.201, -0.388, 0.899 ], "y_axis": [ -0.892, 0.452, -0.005 ], "z_axis": [ -0.404, -0.803, -0.437 ], "quaternion": [ -0.451, -0.443, 0.723, -0.280 ] } }, { "index": 194, "nt1": "///2/440", "nt2": "///2/453", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.359, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.470, "chi2": -163.292, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.413, "C1C1_dist": 10.552, "N1N9_dist": 8.896, "C6C8_dist": 9.879, "CNNC_torsion": 0.708, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 5.601, "planarity": 0.143, "simple_Shear": -0.200, "simple_Stretch": -0.166, "simple_Buckle": -2.695, "simple_Propeller": -4.910, "bp_simpleParams": [ -0.200, -0.166, -0.631, -2.695, -4.910, 2.621 ], "bp_params": [ -0.198, -0.169, -0.631, -2.620, -4.950, 2.623 ], "frame": { "rmsd": null, "origin": [ 249.942, 179.422, 145.497 ], "x_axis": [ -0.619, -0.097, 0.779 ], "y_axis": [ -0.677, 0.568, -0.468 ], "z_axis": [ -0.397, -0.818, -0.417 ], "quaternion": [ -0.364, -0.240, 0.807, -0.398 ] } }, { "index": 195, "nt1": "///2/441", "nt2": "///2/452", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.737, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.767, "chi2": -168.749, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.419, "C1C1_dist": 10.715, "N1N9_dist": 8.979, "C6C8_dist": 9.925, "CNNC_torsion": -4.480, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 5.289, "planarity": 0.088, "simple_Shear": 0.190, "simple_Stretch": -0.104, "simple_Buckle": -2.177, "simple_Propeller": -4.820, "bp_simpleParams": [ 0.190, -0.104, -0.105, -2.177, -4.820, 0.882 ], "bp_params": [ 0.189, -0.107, -0.105, -2.246, -4.788, 0.883 ], "frame": { "rmsd": null, "origin": [ 249.273, 175.640, 145.199 ], "x_axis": [ -0.883, 0.224, 0.413 ], "y_axis": [ -0.239, 0.542, -0.805 ], "z_axis": [ -0.405, -0.810, -0.425 ], "quaternion": [ -0.242, -0.005, 0.844, -0.478 ] } }, { "index": 196, "nt1": "///2/442", "nt2": "///2/449", "bp": "C-A", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -172.746, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.292, "chi2": -135.254, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 15.096, "C1C1_dist": 11.508, "N1N9_dist": 8.647, "C6C8_dist": 7.074, "CNNC_torsion": 125.108, "hbonds_num": 2, "hbonds_desc": "N3-N6(amino)[3.19],N4(amino)-N7[2.53]", "interBase_angle": 11.944, "planarity": 0.159, "simple_Shear": 1.704, "simple_Stretch": 2.042, "simple_Buckle": -11.905, "simple_Propeller": -0.966, "bp_simpleParams": [ 1.704, 2.042, 0.172, -11.905, -0.966, -115.464 ], "bp_params": [ 2.297, 1.341, 0.172, -11.523, 3.143, -115.222 ], "frame": { "rmsd": null, "origin": [ 250.545, 169.920, 145.297 ], "x_axis": [ -0.409, 0.745, -0.527 ], "y_axis": [ 0.725, -0.086, -0.684 ], "z_axis": [ -0.554, -0.662, -0.505 ], "quaternion": [ -0.010, 0.543, 0.676, -0.498 ] } }, { "index": 197, "nt1": "///2/443", "nt2": "///2/447", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -159.935, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 20.558, "chi2": -56.222, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 15.172, "C1C1_dist": 10.332, "N1N9_dist": 7.585, "C6C8_dist": 6.360, "CNNC_torsion": -177.477, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.94],N3(imino)-N7[3.01],O4(carbonyl)*N7[2.56]", "unusual_base2base_hbonds": 1, "interBase_angle": 10.894, "planarity": 0.121, "simple_Shear": 3.096, "simple_Stretch": 1.025, "simple_Buckle": -4.181, "simple_Propeller": 10.060, "bp_simpleParams": [ 3.096, 1.025, 0.417, -4.181, 10.060, -103.212 ], "bp_params": [ 3.181, -0.719, 0.417, 1.616, 10.774, -103.453 ], "frame": { "rmsd": null, "origin": [ 247.831, 167.967, 144.619 ], "x_axis": [ 0.092, 0.527, -0.845 ], "y_axis": [ 0.832, -0.506, -0.225 ], "z_axis": [ -0.547, -0.683, -0.485 ], "quaternion": [ 0.158, 0.722, 0.471, -0.482 ] } }, { "index": 198, "nt1": "///2/458", "nt2": "///2/471", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.742, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 38.725, "chi2": -125.756, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 47.189, "C1C1_dist": 12.993, "N1N9_dist": 10.846, "C6C8_dist": 11.117, "CNNC_torsion": -5.645, "hbonds_num": 3, "hbonds_desc": "N6(amino)-O6(carbonyl)[2.86],N1-N1(imino)[3.03],N1-N2(amino)[3.18]", "interBase_angle": 14.741, "planarity": 0.239, "simple_Shear": -0.791, "simple_Stretch": 1.550, "simple_Buckle": -13.752, "simple_Propeller": -5.308, "bp_simpleParams": [ -0.791, 1.550, -0.307, -13.752, -5.308, -21.822 ], "bp_params": [ -0.913, 1.482, -0.307, -13.291, -6.376, -21.712 ], "frame": { "rmsd": null, "origin": [ 252.626, 186.170, 158.763 ], "x_axis": [ 0.439, -0.017, -0.898 ], "y_axis": [ -0.075, 0.996, -0.055 ], "z_axis": [ 0.896, 0.091, 0.436 ], "quaternion": [ 0.847, -0.043, 0.529, 0.017 ] } }, { "index": 199, "nt1": "///2/459", "nt2": "///2/470", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.363, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 64.776, "chi2": -156.888, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.405, "C1C1_dist": 11.085, "N1N9_dist": 9.575, "C6C8_dist": 10.717, "CNNC_torsion": 2.382, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.40]", "interBase_angle": 9.584, "planarity": 0.240, "simple_Shear": 1.160, "simple_Stretch": 0.813, "simple_Buckle": -9.446, "simple_Propeller": -1.623, "bp_simpleParams": [ 1.160, 0.813, -0.680, -9.446, -1.623, 10.552 ], "bp_params": [ 1.243, 0.679, -0.680, -9.568, -0.559, 10.516 ], "frame": { "rmsd": null, "origin": [ 256.728, 186.734, 158.699 ], "x_axis": [ 0.234, 0.602, -0.764 ], "y_axis": [ -0.376, 0.780, 0.500 ], "z_axis": [ 0.896, 0.170, 0.409 ], "quaternion": [ 0.778, 0.106, 0.533, 0.314 ] } }, { "index": 200, "nt1": "///2/461", "nt2": "///2/468", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.750, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.214, "chi2": -162.460, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.086, "C1C1_dist": 10.467, "N1N9_dist": 8.823, "C6C8_dist": 9.812, "CNNC_torsion": 8.665, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[3.00]", "interBase_angle": 6.798, "planarity": 0.177, "simple_Shear": -0.108, "simple_Stretch": -0.147, "simple_Buckle": -4.625, "simple_Propeller": 4.982, "bp_simpleParams": [ -0.108, -0.147, -0.587, -4.625, 4.982, 1.438 ], "bp_params": [ -0.105, -0.149, -0.587, -4.706, 4.906, 1.438 ], "frame": { "rmsd": null, "origin": [ 265.063, 184.803, 159.027 ], "x_axis": [ -0.382, 0.843, -0.380 ], "y_axis": [ -0.489, 0.165, 0.857 ], "z_axis": [ 0.784, 0.513, 0.349 ], "quaternion": [ 0.532, 0.162, 0.547, 0.626 ] } }, { "index": 201, "nt1": "///2/462", "nt2": "///2/467", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.721, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.292, "chi2": -163.593, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.434, "C1C1_dist": 10.663, "N1N9_dist": 8.922, "C6C8_dist": 9.862, "CNNC_torsion": 7.532, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 8.370, "planarity": 0.113, "simple_Shear": 0.173, "simple_Stretch": -0.153, "simple_Buckle": 4.659, "simple_Propeller": 6.953, "bp_simpleParams": [ 0.173, -0.153, -0.233, 4.659, 6.953, 0.320 ], "bp_params": [ 0.171, -0.155, -0.233, 4.754, 6.889, 0.320 ], "frame": { "rmsd": null, "origin": [ 268.525, 186.004, 158.814 ], "x_axis": [ -0.653, 0.756, 0.040 ], "y_axis": [ -0.275, -0.286, 0.918 ], "z_axis": [ 0.705, 0.589, 0.395 ], "quaternion": [ 0.337, 0.244, 0.493, 0.764 ] } }, { "index": 202, "nt1": "///2/463", "nt2": "///2/466", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "t.W", "DSSR": "t.+W", "intra_chain": true, "chi1": -158.546, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 92.842, "chi2": 60.568, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 17.046, "C1C1_dist": 10.265, "N1N9_dist": 9.127, "C6C8_dist": 10.429, "CNNC_torsion": -178.989, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.14]", "interBase_angle": 18.590, "planarity": 0.251, "simple_Shear": 3.383, "simple_Stretch": 3.258, "simple_Buckle": 18.323, "simple_Propeller": -3.138, "bp_simpleParams": [ 3.383, 3.258, 0.221, 18.323, -3.138, -106.120 ], "bp_params": [ 1.564, -4.429, 0.221, -10.427, -15.390, -106.388 ], "frame": { "rmsd": null, "origin": [ 271.396, 188.620, 158.539 ], "x_axis": [ -0.262, -0.342, 0.902 ], "y_axis": [ 0.819, -0.573, 0.021 ], "z_axis": [ 0.510, 0.745, 0.431 ], "quaternion": [ -0.386, 0.469, 0.254, 0.753 ] } }, { "index": 203, "nt1": "///2/472", "nt2": "///2/476", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -159.488, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.411, "chi2": -170.882, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 15.218, "C1C1_dist": 10.887, "N1N9_dist": 9.024, "C6C8_dist": 9.220, "CNNC_torsion": -7.482, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.16]", "interBase_angle": 17.484, "planarity": 0.241, "simple_Shear": -0.859, "simple_Stretch": 1.983, "simple_Buckle": 0.346, "simple_Propeller": -17.481, "bp_simpleParams": [ -0.859, 1.983, 0.961, 0.346, -17.481, -95.261 ], "bp_params": [ 1.849, 1.118, 0.961, -17.275, -2.694, -94.625 ], "frame": { "rmsd": null, "origin": [ 252.552, 172.675, 171.489 ], "x_axis": [ 0.305, 0.748, -0.589 ], "y_axis": [ -0.825, -0.101, -0.556 ], "z_axis": [ -0.475, 0.656, 0.587 ], "quaternion": [ 0.669, -0.453, 0.042, 0.588 ] } }, { "index": 204, "nt1": "///2/476", "nt2": "///2/488", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -170.882, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 93.792, "chi2": -146.323, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 153.107, "C1C1_dist": 5.510, "N1N9_dist": 7.045, "C6C8_dist": 9.523, "CNNC_torsion": -40.176, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.01],N3-O2'(hydroxyl)[2.38]", "interBase_angle": 15.641, "planarity": 0.256, "simple_Shear": -0.905, "simple_Stretch": 7.025, "simple_Buckle": -8.228, "simple_Propeller": -13.303, "bp_simpleParams": [ -0.905, 7.025, 0.089, -8.228, -13.303, 149.700 ], "bp_params": [ -2.886, 6.468, 0.089, -4.037, -15.111, 149.933 ], "frame": { "rmsd": null, "origin": [ 256.120, 171.309, 173.609 ], "x_axis": [ 0.727, 0.555, -0.404 ], "y_axis": [ -0.649, 0.365, -0.667 ], "z_axis": [ -0.222, 0.748, 0.626 ], "quaternion": [ 0.824, -0.429, 0.055, 0.365 ] } }, { "index": 205, "nt1": "///2/486", "nt2": "///2/513", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -123.643, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 112.707, "chi2": 179.360, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.667, "C1C1_dist": 9.274, "N1N9_dist": 9.053, "C6C8_dist": 10.885, "CNNC_torsion": -7.626, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[3.47],N3-N1(imino)[3.33]", "interBase_angle": 7.780, "planarity": 0.226, "simple_Shear": 3.260, "simple_Stretch": 3.058, "simple_Buckle": 3.013, "simple_Propeller": -7.173, "bp_simpleParams": [ 3.260, 3.058, -0.821, 3.013, -7.173, 63.072 ], "bp_params": [ 4.196, 1.541, -0.821, -0.032, -7.780, 63.190 ], "frame": { "rmsd": null, "origin": [ 240.252, 164.647, 179.181 ], "x_axis": [ -0.609, 0.009, -0.793 ], "y_axis": [ 0.075, 0.996, -0.046 ], "z_axis": [ 0.789, -0.087, -0.608 ], "quaternion": [ 0.441, 0.023, 0.896, -0.037 ] } }, { "index": 206, "nt1": "///2/487", "nt2": "///2/512", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -87.010, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 57.152, "chi2": -172.545, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.669, "C1C1_dist": 10.336, "N1N9_dist": 8.751, "C6C8_dist": 9.782, "CNNC_torsion": 6.446, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.81],O4(carbonyl)-N6(amino)[3.01]", "interBase_angle": 1.438, "planarity": 0.158, "simple_Shear": -0.054, "simple_Stretch": -0.189, "simple_Buckle": -1.437, "simple_Propeller": 0.050, "bp_simpleParams": [ -0.054, -0.189, -0.686, -1.437, 0.050, 3.455 ], "bp_params": [ -0.052, -0.189, -0.686, -1.438, 0.035, 3.455 ], "frame": { "rmsd": null, "origin": [ 244.398, 160.737, 179.335 ], "x_axis": [ -0.704, 0.165, -0.691 ], "y_axis": [ 0.355, 0.924, -0.141 ], "z_axis": [ 0.616, -0.344, -0.709 ], "quaternion": [ 0.358, 0.142, 0.913, -0.133 ] } }, { "index": 207, "nt1": "///2/489", "nt2": "///2/511", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 162.761, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.358, "chi2": -161.807, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.012, "C1C1_dist": 10.777, "N1N9_dist": 8.944, "C6C8_dist": 9.831, "CNNC_torsion": 6.992, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.87]", "interBase_angle": 4.706, "planarity": 0.116, "simple_Shear": 0.073, "simple_Stretch": -0.123, "simple_Buckle": -3.623, "simple_Propeller": 3.004, "bp_simpleParams": [ 0.073, -0.123, -0.569, -3.623, 3.004, -1.824 ], "bp_params": [ 0.071, -0.124, -0.569, -3.586, 3.048, -1.824 ], "frame": { "rmsd": null, "origin": [ 246.040, 157.989, 176.961 ], "x_axis": [ -0.475, 0.662, -0.580 ], "y_axis": [ 0.717, 0.674, 0.181 ], "z_axis": [ 0.511, -0.329, -0.794 ], "quaternion": [ 0.318, 0.402, 0.858, -0.043 ] } }, { "index": 208, "nt1": "///2/490", "nt2": "///2/510", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.930, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.699, "chi2": -174.458, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.493, "C1C1_dist": 10.684, "N1N9_dist": 8.931, "C6C8_dist": 9.863, "CNNC_torsion": 9.506, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 7.680, "planarity": 0.136, "simple_Shear": 0.164, "simple_Stretch": -0.174, "simple_Buckle": 0.657, "simple_Propeller": 7.652, "bp_simpleParams": [ 0.164, -0.174, -0.496, 0.657, 7.652, -0.321 ], "bp_params": [ 0.162, -0.176, -0.496, 0.749, 7.644, -0.322 ], "frame": { "rmsd": null, "origin": [ 246.249, 155.707, 173.905 ], "x_axis": [ 0.041, 0.957, -0.286 ], "y_axis": [ 0.856, 0.114, 0.504 ], "z_axis": [ 0.516, -0.265, -0.815 ], "quaternion": [ 0.292, 0.660, 0.687, 0.087 ] } }, { "index": 209, "nt1": "///2/490", "nt2": "///2/574", "bp": "C-A", "name": "--", "Saenger": "--", "LW": ".SW", "DSSR": ".m-W", "intra_chain": true, "chi1": -165.930, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 113.420, "chi2": 166.174, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.884, "C1C1_dist": 9.438, "N1N9_dist": 8.789, "C6C8_dist": 9.884, "CNNC_torsion": -55.013, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.64],O2(carbonyl)-N6(amino)[2.77]", "interBase_angle": 36.415, "planarity": 0.500, "simple_Shear": 6.398, "simple_Stretch": 3.138, "simple_Buckle": 34.193, "simple_Propeller": -12.527, "bp_simpleParams": [ 6.398, 3.138, 1.221, 34.193, -12.527, 37.813 ], "bp_params": [ 6.866, -1.908, 1.221, 17.490, -31.940, 38.821 ], "frame": { "rmsd": null, "origin": [ 247.893, 153.130, 175.563 ], "x_axis": [ -0.428, 0.891, -0.149 ], "y_axis": [ 0.731, 0.439, 0.522 ], "z_axis": [ 0.531, 0.114, -0.840 ], "quaternion": [ 0.207, 0.493, 0.823, 0.193 ] } }, { "index": 210, "nt1": "///2/491", "nt2": "///2/493", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -157.181, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 136.843, "chi2": -171.520, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 27.758, "C1C1_dist": 7.846, "N1N9_dist": 7.629, "C6C8_dist": 7.917, "CNNC_torsion": -8.389, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N7[3.24],O2(carbonyl)-N6(amino)[2.89]", "interBase_angle": 57.219, "planarity": 0.585, "simple_Shear": 0.212, "simple_Stretch": 6.505, "simple_Buckle": -20.123, "simple_Propeller": -53.564, "bp_simpleParams": [ 0.212, 6.505, 2.052, -20.123, -53.564, -14.727 ], "bp_params": [ 6.450, -0.869, 2.052, -51.803, 24.301, -13.631 ], "frame": { "rmsd": null, "origin": [ 244.842, 152.775, 171.517 ], "x_axis": [ 0.542, 0.840, 0.012 ], "y_axis": [ 0.840, -0.543, 0.001 ], "z_axis": [ 0.007, 0.010, -1.000 ], "quaternion": [ -0.003, 0.878, 0.478, 0.005 ] } }, { "index": 211, "nt1": "///2/491", "nt2": "///2/509", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.181, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.025, "chi2": -164.540, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.232, "C1C1_dist": 10.644, "N1N9_dist": 8.913, "C6C8_dist": 9.853, "CNNC_torsion": 5.960, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 0.603, "planarity": 0.162, "simple_Shear": 0.180, "simple_Stretch": -0.198, "simple_Buckle": -0.377, "simple_Propeller": -0.471, "bp_simpleParams": [ 0.180, -0.198, -0.703, -0.377, -0.471, 0.561 ], "bp_params": [ 0.177, -0.201, -0.703, -0.383, -0.466, 0.561 ], "frame": { "rmsd": null, "origin": [ 246.446, 155.589, 170.252 ], "x_axis": [ 0.394, 0.904, 0.163 ], "y_axis": [ 0.784, -0.424, 0.454 ], "z_axis": [ 0.479, -0.051, -0.876 ], "quaternion": [ 0.154, 0.821, 0.514, 0.196 ] } }, { "index": 212, "nt1": "///2/492", "nt2": "///2/508", "bp": "C-A", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -142.876, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 30.163, "chi2": -174.005, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 8.055, "C1C1_dist": 11.224, "N1N9_dist": 8.543, "C6C8_dist": 7.572, "CNNC_torsion": -163.217, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.35],N3-N6(amino)[3.34],N4(amino)-N7[3.61]", "interBase_angle": 19.106, "planarity": 0.225, "simple_Shear": 3.428, "simple_Stretch": 1.194, "simple_Buckle": 16.481, "simple_Propeller": -9.665, "bp_simpleParams": [ 3.428, 1.194, -1.466, 16.481, -9.665, -86.195 ], "bp_params": [ 3.581, -0.594, -1.466, 9.871, -16.358, -86.568 ], "frame": { "rmsd": null, "origin": [ 243.430, 153.597, 165.096 ], "x_axis": [ 0.909, 0.362, 0.206 ], "y_axis": [ 0.306, -0.916, 0.257 ], "z_axis": [ 0.282, -0.171, -0.944 ], "quaternion": [ 0.110, 0.971, 0.172, 0.126 ] } }, { "index": 213, "nt1": "///2/493", "nt2": "///2/510", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -171.520, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 30.405, "chi2": -174.458, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 120.201, "C1C1_dist": 9.035, "N1N9_dist": 8.521, "C6C8_dist": 9.416, "CNNC_torsion": -4.740, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.14],N1-O2'(hydroxyl)[3.26]", "interBase_angle": 64.549, "planarity": 0.864, "simple_Shear": -5.343, "simple_Stretch": 3.317, "simple_Buckle": 50.092, "simple_Propeller": -40.710, "bp_simpleParams": [ -5.343, 3.317, 2.031, 50.092, -40.710, 42.449 ], "bp_params": [ -6.198, -1.066, 2.031, 64.447, 3.622, 36.398 ], "frame": { "rmsd": null, "origin": [ 244.949, 152.697, 173.138 ], "x_axis": [ 0.331, 0.934, -0.133 ], "y_axis": [ 0.943, -0.323, 0.077 ], "z_axis": [ 0.029, -0.151, -0.988 ], "quaternion": [ 0.070, 0.813, 0.578, -0.032 ] } }, { "index": 214, "nt1": "///2/495", "nt2": "///2/508", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.960, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.930, "chi2": -174.005, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.549, "C1C1_dist": 10.264, "N1N9_dist": 8.600, "C6C8_dist": 9.589, "CNNC_torsion": 1.359, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.87],O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 11.780, "planarity": 0.344, "simple_Shear": -0.081, "simple_Stretch": -0.432, "simple_Buckle": -6.112, "simple_Propeller": -10.070, "bp_simpleParams": [ -0.081, -0.432, -1.287, -6.112, -10.070, 3.985 ], "bp_params": [ -0.077, -0.432, -1.287, -5.991, -10.142, 3.995 ], "frame": { "rmsd": null, "origin": [ 241.945, 152.896, 164.677 ], "x_axis": [ 0.834, -0.385, 0.396 ], "y_axis": [ -0.436, -0.899, 0.044 ], "z_axis": [ 0.339, -0.209, -0.917 ], "quaternion": [ 0.066, 0.955, -0.215, 0.192 ] } }, { "index": 215, "nt1": "///2/496", "nt2": "///2/506", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.527, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.626, "chi2": -161.221, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.907, "C1C1_dist": 10.735, "N1N9_dist": 8.966, "C6C8_dist": 9.902, "CNNC_torsion": -1.469, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 3.460, "planarity": 0.074, "simple_Shear": 0.156, "simple_Stretch": -0.125, "simple_Buckle": -0.179, "simple_Propeller": -3.455, "bp_simpleParams": [ 0.156, -0.125, -0.231, -0.179, -3.455, 0.524 ], "bp_params": [ 0.155, -0.127, -0.231, -0.217, -3.453, 0.524 ], "frame": { "rmsd": null, "origin": [ 244.786, 151.028, 161.864 ], "x_axis": [ 0.405, -0.849, 0.340 ], "y_axis": [ -0.865, -0.477, -0.159 ], "z_axis": [ 0.297, -0.229, -0.927 ], "quaternion": [ 0.021, 0.838, -0.511, 0.190 ] } }, { "index": 216, "nt1": "///2/497", "nt2": "///2/505", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.417, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.047, "chi2": -163.039, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.368, "C1C1_dist": 10.659, "N1N9_dist": 8.911, "C6C8_dist": 9.832, "CNNC_torsion": 7.008, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 0.749, "planarity": 0.167, "simple_Shear": 0.161, "simple_Stretch": -0.222, "simple_Buckle": 0.721, "simple_Propeller": 0.200, "bp_simpleParams": [ 0.161, -0.222, -0.767, 0.721, 0.200, -0.186 ], "bp_params": [ 0.158, -0.224, -0.767, 0.724, 0.192, -0.186 ], "frame": { "rmsd": null, "origin": [ 247.209, 150.880, 158.783 ], "x_axis": [ -0.114, -0.964, 0.240 ], "y_axis": [ -0.945, 0.031, -0.325 ], "z_axis": [ 0.306, -0.264, -0.915 ], "quaternion": [ 0.023, -0.665, 0.718, -0.205 ] } }, { "index": 217, "nt1": "///2/498", "nt2": "///2/504", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.071, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.720, "chi2": -173.097, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.405, "C1C1_dist": 11.173, "N1N9_dist": 9.300, "C6C8_dist": 10.130, "CNNC_torsion": 18.922, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.35],N3-N1(imino)[3.18],N4(amino)-O6(carbonyl)[3.12]", "interBase_angle": 23.639, "planarity": 0.302, "simple_Shear": 0.078, "simple_Stretch": 0.114, "simple_Buckle": 2.641, "simple_Propeller": 23.491, "bp_simpleParams": [ 0.078, 0.114, -0.126, 2.641, 23.491, -4.065 ], "bp_params": [ 0.079, 0.113, -0.126, 2.743, 23.480, -4.151 ], "frame": { "rmsd": null, "origin": [ 249.700, 149.484, 156.240 ], "x_axis": [ -0.635, -0.724, 0.271 ], "y_axis": [ -0.761, 0.524, -0.382 ], "z_axis": [ 0.135, -0.449, -0.883 ], "quaternion": [ -0.039, -0.426, 0.872, -0.238 ] } }, { "index": 218, "nt1": "///2/510", "nt2": "///2/574", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -174.458, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 99.398, "chi2": 166.174, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.710, "C1C1_dist": 10.766, "N1N9_dist": 9.891, "C6C8_dist": 9.851, "CNNC_torsion": 51.373, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N6(amino)[3.22]", "interBase_angle": 43.880, "planarity": 0.571, "simple_Shear": -0.480, "simple_Stretch": 6.829, "simple_Buckle": -34.539, "simple_Propeller": 27.066, "bp_simpleParams": [ -0.480, 6.829, -1.227, -34.539, 27.066, -36.823 ], "bp_params": [ 6.591, 1.852, -1.227, 19.279, 39.418, -38.486 ], "frame": { "rmsd": null, "origin": [ 248.093, 152.996, 175.428 ], "x_axis": [ -0.393, 0.897, -0.204 ], "y_axis": [ -0.740, -0.440, -0.509 ], "z_axis": [ -0.546, -0.049, 0.836 ], "quaternion": [ 0.501, -0.230, -0.171, 0.817 ] } }, { "index": 219, "nt1": "///2/523", "nt2": "///2/594", "bp": "A+A", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W+M", "intra_chain": true, "chi1": 164.313, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 21.314, "chi2": -119.053, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 27.878, "C1C1_dist": 12.157, "N1N9_dist": 9.494, "C6C8_dist": 7.992, "CNNC_torsion": 45.436, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N7[3.07]", "interBase_angle": 9.186, "planarity": 0.337, "simple_Shear": -6.535, "simple_Stretch": 1.814, "simple_Buckle": 9.156, "simple_Propeller": -0.737, "bp_simpleParams": [ -6.535, 1.814, -1.655, 9.156, -0.737, -131.159 ], "bp_params": [ -3.525, 5.795, -1.655, 6.174, -6.801, -131.172 ], "frame": { "rmsd": null, "origin": [ 225.597, 160.855, 203.214 ], "x_axis": [ -0.560, -0.293, -0.775 ], "y_axis": [ 0.200, -0.956, 0.216 ], "z_axis": [ -0.804, -0.034, 0.594 ], "quaternion": [ -0.140, -0.447, 0.052, 0.882 ] } }, { "index": 220, "nt1": "///2/523", "nt2": "///2/643", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "intra_chain": true, "chi1": 164.313, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 17.862, "chi2": -105.800, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 64.504, "C1C1_dist": 11.033, "N1N9_dist": 9.047, "C6C8_dist": 6.999, "CNNC_torsion": 43.245, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N7[3.63]", "interBase_angle": 10.743, "planarity": 0.312, "simple_Shear": -0.549, "simple_Stretch": 7.211, "simple_Buckle": 9.236, "simple_Propeller": -5.486, "bp_simpleParams": [ -0.549, 7.211, 1.369, 9.236, -5.486, 171.170 ], "bp_params": [ -4.561, -5.612, 1.369, -2.938, 10.333, 171.203 ], "frame": { "rmsd": null, "origin": [ 227.992, 162.250, 204.069 ], "x_axis": [ 0.385, 0.717, 0.582 ], "y_axis": [ -0.451, 0.696, -0.559 ], "z_axis": [ -0.805, -0.048, 0.591 ], "quaternion": [ 0.817, -0.156, -0.424, 0.357 ] } }, { "index": 221, "nt1": "///2/524", "nt2": "///2/594", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -170.556, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.377, "chi2": -119.053, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 49.205, "C1C1_dist": 8.087, "N1N9_dist": 6.461, "C6C8_dist": 6.036, "CNNC_torsion": -26.903, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)*OP1[3.15],N3(imino)-N7[2.97],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 3.629, "planarity": 0.398, "simple_Shear": -2.938, "simple_Stretch": 0.860, "simple_Buckle": 3.383, "simple_Propeller": -1.313, "bp_simpleParams": [ -2.938, 0.860, 1.889, 3.383, -1.313, -70.075 ], "bp_params": [ -0.850, 2.941, 1.889, 0.707, -3.559, -70.100 ], "frame": { "rmsd": null, "origin": [ 223.423, 162.329, 203.347 ], "x_axis": [ -0.342, -0.735, -0.585 ], "y_axis": [ 0.466, -0.674, 0.574 ], "z_axis": [ -0.816, -0.076, 0.573 ], "quaternion": [ -0.373, -0.435, 0.155, 0.804 ] } }, { "index": 222, "nt1": "///2/526", "nt2": "///2/559", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.350, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.181, "chi2": -178.545, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.240, "C1C1_dist": 13.216, "N1N9_dist": 11.251, "C6C8_dist": 11.776, "CNNC_torsion": 0.692, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O6(carbonyl)[3.64],N1-N1(imino)[3.46]", "interBase_angle": 12.746, "planarity": 0.249, "simple_Shear": 0.313, "simple_Stretch": 1.993, "simple_Buckle": 11.413, "simple_Propeller": -5.673, "bp_simpleParams": [ 0.313, 1.993, -0.946, 11.413, -5.673, -11.266 ], "bp_params": [ 0.370, 1.983, -0.946, 11.252, -5.987, -11.228 ], "frame": { "rmsd": null, "origin": [ 222.810, 144.157, 217.361 ], "x_axis": [ 0.454, 0.828, 0.328 ], "y_axis": [ -0.545, 0.550, -0.633 ], "z_axis": [ -0.705, 0.109, 0.701 ], "quaternion": [ 0.822, -0.225, -0.314, 0.417 ] } }, { "index": 223, "nt1": "///2/526", "nt2": "///2/588", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "..H", "DSSR": "..-M", "intra_chain": true, "chi1": -161.350, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 8.026, "chi2": 49.340, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 21.342, "C1C1_dist": 13.881, "N1N9_dist": 11.063, "C6C8_dist": 9.129, "CNNC_torsion": 51.880, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O6(carbonyl)[3.37]", "interBase_angle": 34.698, "planarity": 0.477, "simple_Shear": 0.882, "simple_Stretch": 5.155, "simple_Buckle": -22.477, "simple_Propeller": 26.434, "bp_simpleParams": [ 0.882, 5.155, 0.878, -22.477, 26.434, -130.582 ], "bp_params": [ 1.839, 4.896, 0.878, -17.007, 30.245, -131.604 ], "frame": { "rmsd": null, "origin": [ 225.164, 145.183, 217.328 ], "x_axis": [ -0.474, 0.876, -0.091 ], "y_axis": [ -0.752, -0.456, -0.476 ], "z_axis": [ -0.459, -0.157, 0.875 ], "quaternion": [ 0.486, -0.164, -0.189, 0.837 ] } }, { "index": 224, "nt1": "///2/528", "nt2": "///2/557", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.275, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.549, "chi2": -157.942, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.238, "C1C1_dist": 10.482, "N1N9_dist": 8.825, "C6C8_dist": 9.810, "CNNC_torsion": 5.499, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.84]", "interBase_angle": 0.790, "planarity": 0.141, "simple_Shear": 0.081, "simple_Stretch": -0.158, "simple_Buckle": 0.542, "simple_Propeller": 0.574, "bp_simpleParams": [ 0.081, -0.158, -0.645, 0.542, 0.574, 1.766 ], "bp_params": [ 0.079, -0.159, -0.645, 0.550, 0.567, 1.766 ], "frame": { "rmsd": null, "origin": [ 219.469, 145.865, 224.156 ], "x_axis": [ -0.097, 0.868, -0.487 ], "y_axis": [ -0.646, -0.427, -0.633 ], "z_axis": [ -0.757, 0.253, 0.602 ], "quaternion": [ 0.519, -0.427, -0.130, 0.729 ] } }, { "index": 225, "nt1": "///2/529", "nt2": "///2/556", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.075, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.751, "chi2": -161.404, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.055, "C1C1_dist": 10.410, "N1N9_dist": 8.715, "C6C8_dist": 9.655, "CNNC_torsion": 14.632, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.83]", "interBase_angle": 14.774, "planarity": 0.318, "simple_Shear": 0.047, "simple_Stretch": -0.289, "simple_Buckle": 11.273, "simple_Propeller": 9.549, "bp_simpleParams": [ 0.047, -0.289, -0.893, 11.273, 9.549, -1.017 ], "bp_params": [ 0.043, -0.289, -0.893, 11.404, 9.392, -1.015 ], "frame": { "rmsd": null, "origin": [ 217.756, 147.254, 226.802 ], "x_axis": [ -0.310, 0.476, -0.823 ], "y_axis": [ -0.540, -0.800, -0.259 ], "z_axis": [ -0.782, 0.365, 0.505 ], "quaternion": [ 0.314, -0.496, 0.033, 0.809 ] } }, { "index": 226, "nt1": "///2/530", "nt2": "///2/556", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.586, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 89.157, "chi2": -161.404, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.381, "C1C1_dist": 7.007, "N1N9_dist": 6.279, "C6C8_dist": 7.950, "CNNC_torsion": -4.019, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N3(imino)[2.71],N3(imino)-O4(carbonyl)[3.35]", "interBase_angle": 25.118, "planarity": 0.455, "simple_Shear": 2.087, "simple_Stretch": -1.337, "simple_Buckle": 20.860, "simple_Propeller": 13.991, "bp_simpleParams": [ 2.087, -1.337, 1.753, 20.860, 13.991, 41.084 ], "bp_params": [ 1.718, -1.787, 1.753, 23.572, 8.676, 40.398 ], "frame": { "rmsd": null, "origin": [ 216.689, 148.597, 226.585 ], "x_axis": [ -0.454, 0.148, -0.878 ], "y_axis": [ -0.461, -0.883, 0.089 ], "z_axis": [ -0.762, 0.445, 0.469 ], "quaternion": [ 0.182, -0.490, 0.160, 0.838 ] } }, { "index": 227, "nt1": "///2/532", "nt2": "///2/533", "bp": "C+A", "name": "Platform", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -131.709, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 112.542, "chi2": -140.229, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.134, "C1C1_dist": 6.660, "N1N9_dist": 6.084, "C6C8_dist": 6.175, "CNNC_torsion": 14.297, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N7[2.59],O2(carbonyl)-N6(amino)[2.98],N3-N6(amino)[2.92]", "interBase_angle": 7.277, "planarity": 0.435, "simple_Shear": 0.022, "simple_Stretch": 2.760, "simple_Buckle": 7.277, "simple_Propeller": 0.046, "bp_simpleParams": [ 0.022, 2.760, -2.080, 7.277, 0.046, -36.491 ], "bp_params": [ 2.757, 0.118, -2.080, 0.413, -7.265, -36.560 ], "frame": { "rmsd": null, "origin": [ 205.741, 152.284, 225.227 ], "x_axis": [ 0.384, -0.884, 0.266 ], "y_axis": [ -0.073, 0.258, 0.963 ], "z_axis": [ -0.920, -0.389, 0.034 ], "quaternion": [ 0.647, 0.522, -0.458, -0.313 ] } }, { "index": 228, "nt1": "///2/532", "nt2": "///2/552", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -131.709, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 62.245, "chi2": -172.762, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.349, "C1C1_dist": 10.305, "N1N9_dist": 8.805, "C6C8_dist": 9.880, "CNNC_torsion": 7.178, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.66],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[3.02]", "interBase_angle": 12.226, "planarity": 0.190, "simple_Shear": 0.322, "simple_Stretch": -0.143, "simple_Buckle": -0.934, "simple_Propeller": 12.190, "bp_simpleParams": [ 0.322, -0.143, 0.405, -0.934, 12.190, 6.644 ], "bp_params": [ 0.318, -0.151, 0.405, -0.602, 12.211, 6.681 ], "frame": { "rmsd": null, "origin": [ 207.387, 151.678, 225.702 ], "x_axis": [ 0.228, -0.968, -0.105 ], "y_axis": [ 0.043, -0.097, 0.994 ], "z_axis": [ -0.973, -0.231, 0.020 ], "quaternion": [ 0.536, 0.571, -0.405, -0.471 ] } }, { "index": 229, "nt1": "///2/533", "nt2": "///2/551", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -140.229, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.136, "chi2": -151.266, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.936, "C1C1_dist": 10.677, "N1N9_dist": 8.860, "C6C8_dist": 9.716, "CNNC_torsion": 7.893, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.89],N1-N3(imino)[2.88]", "interBase_angle": 6.244, "planarity": 0.216, "simple_Shear": 0.095, "simple_Stretch": -0.274, "simple_Buckle": -5.043, "simple_Propeller": -3.681, "bp_simpleParams": [ 0.095, -0.274, -1.120, -5.043, -3.681, -2.235 ], "bp_params": [ 0.091, -0.276, -1.120, -5.101, -3.601, -2.234 ], "frame": { "rmsd": null, "origin": [ 203.717, 152.911, 224.946 ], "x_axis": [ 0.421, -0.708, 0.567 ], "y_axis": [ -0.252, 0.509, 0.823 ], "z_axis": [ -0.871, -0.489, 0.036 ], "quaternion": [ 0.701, 0.468, -0.513, -0.163 ] } }, { "index": 230, "nt1": "///2/534", "nt2": "///2/550", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.883, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.075, "chi2": -179.191, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.222, "C1C1_dist": 10.683, "N1N9_dist": 8.857, "C6C8_dist": 9.733, "CNNC_torsion": 11.264, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 3.194, "planarity": 0.255, "simple_Shear": -0.107, "simple_Stretch": -0.362, "simple_Buckle": -3.148, "simple_Propeller": -0.535, "bp_simpleParams": [ -0.107, -0.362, -1.220, -3.148, -0.535, -1.540 ], "bp_params": [ -0.105, -0.363, -1.220, -3.145, -0.554, -1.539 ], "frame": { "rmsd": null, "origin": [ 200.860, 148.137, 226.709 ], "x_axis": [ 0.020, -0.656, 0.754 ], "y_axis": [ -0.333, 0.707, 0.624 ], "z_axis": [ -0.943, -0.264, -0.205 ], "quaternion": [ 0.617, 0.360, -0.688, -0.131 ] } }, { "index": 231, "nt1": "///2/535", "nt2": "///2/547", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tH.", "DSSR": "tM-.", "intra_chain": true, "chi1": -170.702, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 5.552, "chi2": -169.982, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 83.345, "C1C1_dist": 11.425, "N1N9_dist": 9.880, "C6C8_dist": 10.162, "CNNC_torsion": -131.456, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.35],O6(carbonyl)-N2(amino)[2.94]", "interBase_angle": 24.461, "planarity": 0.325, "simple_Shear": -6.836, "simple_Stretch": 3.226, "simple_Buckle": -6.810, "simple_Propeller": -23.494, "bp_simpleParams": [ -6.836, 3.226, 0.448, -6.810, -23.494, -19.036 ], "bp_params": [ -7.103, -2.585, 0.448, 11.970, -21.332, -19.265 ], "frame": { "rmsd": null, "origin": [ 198.383, 147.424, 227.775 ], "x_axis": [ 0.011, -0.188, 0.982 ], "y_axis": [ -0.082, 0.979, 0.188 ], "z_axis": [ -0.997, -0.082, -0.005 ], "quaternion": [ 0.704, 0.096, -0.702, -0.038 ] } }, { "index": 232, "nt1": "///2/535", "nt2": "///2/549", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.702, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.982, "chi2": -173.666, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 29.003, "C1C1_dist": 12.399, "N1N9_dist": 10.249, "C6C8_dist": 10.616, "CNNC_torsion": 14.439, "hbonds_num": 2, "hbonds_desc": "N1(imino)*N4(amino)[2.95],N2(amino)-N3[3.67]", "unusual_base2base_hbonds": 1, "interBase_angle": 9.932, "planarity": 0.145, "simple_Shear": 2.370, "simple_Stretch": 1.117, "simple_Buckle": -9.596, "simple_Propeller": -2.564, "bp_simpleParams": [ 2.370, 1.117, -0.678, -9.596, -2.564, -23.848 ], "bp_params": [ 2.572, 0.503, -0.678, -9.931, -0.130, -23.761 ], "frame": { "rmsd": null, "origin": [ 198.200, 146.708, 222.693 ], "x_axis": [ -0.179, -0.171, 0.969 ], "y_axis": [ -0.261, 0.958, 0.121 ], "z_axis": [ -0.949, -0.231, -0.216 ], "quaternion": [ 0.625, 0.141, -0.767, 0.036 ] } }, { "index": 233, "nt1": "///2/537", "nt2": "///2/546", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.917, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.304, "chi2": -175.167, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.925, "C1C1_dist": 10.464, "N1N9_dist": 8.859, "C6C8_dist": 9.890, "CNNC_torsion": 5.259, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.69],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 11.855, "planarity": 0.178, "simple_Shear": 0.234, "simple_Stretch": -0.141, "simple_Buckle": -2.955, "simple_Propeller": 11.481, "bp_simpleParams": [ 0.234, -0.141, 0.471, -2.955, 11.481, 5.011 ], "bp_params": [ 0.232, -0.145, 0.471, -2.743, 11.533, 5.035 ], "frame": { "rmsd": null, "origin": [ 193.237, 144.824, 228.845 ], "x_axis": [ 0.478, 0.878, -0.033 ], "y_axis": [ -0.424, 0.198, -0.884 ], "z_axis": [ -0.770, 0.436, 0.467 ], "quaternion": [ 0.732, -0.451, -0.252, 0.445 ] } }, { "index": 234, "nt1": "///2/538", "nt2": "///2/545", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.002, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.682, "chi2": -170.076, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.360, "C1C1_dist": 10.551, "N1N9_dist": 8.760, "C6C8_dist": 9.622, "CNNC_torsion": 15.028, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.65],O4(carbonyl)-N6(amino)[2.62]", "interBase_angle": 22.425, "planarity": 0.269, "simple_Shear": -0.680, "simple_Stretch": -0.303, "simple_Buckle": 3.437, "simple_Propeller": 22.160, "bp_simpleParams": [ -0.680, -0.303, 0.241, 3.437, 22.160, -2.717 ], "bp_params": [ -0.657, -0.350, 0.241, 1.809, 22.352, -2.769 ], "frame": { "rmsd": null, "origin": [ 191.405, 145.477, 232.443 ], "x_axis": [ 0.319, 0.845, -0.429 ], "y_axis": [ -0.592, -0.176, -0.787 ], "z_axis": [ -0.740, 0.505, 0.444 ], "quaternion": [ 0.630, -0.513, -0.124, 0.570 ] } }, { "index": 235, "nt1": "///2/539", "nt2": "///2/544", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.341, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.427, "chi2": -174.732, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.759, "C1C1_dist": 10.769, "N1N9_dist": 8.781, "C6C8_dist": 9.499, "CNNC_torsion": 17.830, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.06],N3-N1(imino)[2.66],N4(amino)-O6(carbonyl)[2.37]", "interBase_angle": 26.269, "planarity": 0.378, "simple_Shear": -0.517, "simple_Stretch": -0.385, "simple_Buckle": 16.796, "simple_Propeller": 20.198, "bp_simpleParams": [ -0.517, -0.385, -0.020, 16.796, 20.198, -8.335 ], "bp_params": [ -0.499, -0.407, -0.020, 15.869, 20.935, -8.398 ], "frame": { "rmsd": null, "origin": [ 190.359, 147.331, 235.556 ], "x_axis": [ 0.003, 0.622, -0.783 ], "y_axis": [ -0.690, -0.566, -0.452 ], "z_axis": [ -0.724, 0.541, 0.427 ], "quaternion": [ 0.465, -0.534, 0.032, 0.705 ] } }, { "index": 236, "nt1": "///2/540", "nt2": "///2/543", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -166.443, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.063, "chi2": -165.415, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.954, "C1C1_dist": 9.618, "N1N9_dist": 7.698, "C6C8_dist": 7.301, "CNNC_torsion": -161.330, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.17],O4(carbonyl)*OP2[3.19]", "interBase_angle": 20.629, "planarity": 0.238, "simple_Shear": 6.740, "simple_Stretch": 3.242, "simple_Buckle": 19.817, "simple_Propeller": 5.730, "bp_simpleParams": [ 6.740, 3.242, -0.659, 19.817, 5.730, -77.220 ], "bp_params": [ 6.292, -4.042, -0.659, 15.228, -13.916, -77.139 ], "frame": { "rmsd": null, "origin": [ 190.941, 150.699, 240.912 ], "x_axis": [ -0.578, -0.384, -0.720 ], "y_axis": [ -0.313, -0.711, 0.630 ], "z_axis": [ -0.753, 0.590, 0.291 ], "quaternion": [ -0.022, -0.459, 0.380, 0.803 ] } }, { "index": 237, "nt1": "///2/560", "nt2": "///2/588", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 174.524, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 15.265, "chi2": 49.340, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 27.730, "C1C1_dist": 14.194, "N1N9_dist": 11.487, "C6C8_dist": 10.500, "CNNC_torsion": 65.251, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O6(carbonyl)[3.34]", "interBase_angle": 43.672, "planarity": 0.604, "simple_Shear": -4.485, "simple_Stretch": 2.958, "simple_Buckle": -21.008, "simple_Propeller": 38.287, "bp_simpleParams": [ -4.485, 2.958, 1.226, -21.008, 38.287, 138.604 ], "bp_params": [ -0.084, -5.372, 1.226, -21.439, -38.047, 139.986 ], "frame": { "rmsd": null, "origin": [ 225.891, 144.529, 216.333 ], "x_axis": [ -0.382, 0.915, -0.127 ], "y_axis": [ 0.773, 0.392, 0.499 ], "z_axis": [ 0.506, 0.093, -0.857 ], "quaternion": [ 0.195, 0.520, 0.811, 0.182 ] } }, { "index": 238, "nt1": "///2/561", "nt2": "///2/590", "bp": "A-A", "name": "--", "Saenger": "05-V", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -172.842, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 22.341, "chi2": 72.528, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 28.171, "C1C1_dist": 12.353, "N1N9_dist": 9.765, "C6C8_dist": 8.290, "CNNC_torsion": -166.557, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N7[3.44],N1-N6(amino)[3.58]", "interBase_angle": 6.027, "planarity": 0.171, "simple_Shear": 3.130, "simple_Stretch": 3.920, "simple_Buckle": 5.694, "simple_Propeller": 1.973, "bp_simpleParams": [ 3.130, 3.920, -0.746, 5.694, 1.973, -113.005 ], "bp_params": [ 4.830, 1.353, -0.746, 5.774, -1.727, -112.944 ], "frame": { "rmsd": null, "origin": [ 226.564, 148.833, 212.321 ], "x_axis": [ 0.400, -0.804, 0.440 ], "y_axis": [ -0.491, -0.594, -0.638 ], "z_axis": [ 0.774, 0.039, -0.632 ], "quaternion": [ -0.209, 0.810, -0.400, 0.375 ] } }, { "index": 239, "nt1": "///2/562", "nt2": "///2/587", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -167.306, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 18.997, "chi2": -64.126, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 17.266, "C1C1_dist": 10.887, "N1N9_dist": 8.137, "C6C8_dist": 6.834, "CNNC_torsion": 163.963, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.65],O4(carbonyl)*N7[2.87]", "unusual_base2base_hbonds": 1, "interBase_angle": 15.394, "planarity": 0.218, "simple_Shear": 2.788, "simple_Stretch": 1.708, "simple_Buckle": 0.959, "simple_Propeller": -15.364, "bp_simpleParams": [ 2.788, 1.708, -0.084, 0.959, -15.364, -108.456 ], "bp_params": [ 3.268, 0.088, -0.084, -6.845, -13.788, -108.753 ], "frame": { "rmsd": null, "origin": [ 230.294, 149.072, 210.038 ], "x_axis": [ 0.116, -0.970, 0.213 ], "y_axis": [ -0.535, -0.242, -0.809 ], "z_axis": [ 0.837, -0.020, -0.547 ], "quaternion": [ -0.286, 0.690, -0.545, 0.380 ] } }, { "index": 240, "nt1": "///2/563", "nt2": "///2/592", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.145, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.521, "chi2": -153.607, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 58.008, "C1C1_dist": 10.476, "N1N9_dist": 8.883, "C6C8_dist": 9.890, "CNNC_torsion": -3.073, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 5.942, "planarity": 0.095, "simple_Shear": -0.200, "simple_Stretch": -0.142, "simple_Buckle": 5.731, "simple_Propeller": 1.572, "bp_simpleParams": [ -0.200, -0.142, 0.506, 5.731, 1.572, 2.892 ], "bp_params": [ -0.198, -0.145, 0.506, 5.707, 1.658, 2.889 ], "frame": { "rmsd": null, "origin": [ 233.460, 149.549, 209.073 ], "x_axis": [ 0.510, -0.691, 0.512 ], "y_axis": [ -0.460, -0.722, -0.517 ], "z_axis": [ 0.727, 0.028, -0.686 ], "quaternion": [ -0.159, 0.854, -0.337, 0.363 ] } }, { "index": 241, "nt1": "///2/564", "nt2": "///2/586", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 178.088, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.056, "chi2": -170.305, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 91.410, "C1C1_dist": 10.080, "N1N9_dist": 8.752, "C6C8_dist": 9.214, "CNNC_torsion": 46.716, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.68],N6(amino)-N3[2.68]", "interBase_angle": 14.239, "planarity": 0.168, "simple_Shear": -6.969, "simple_Stretch": 2.271, "simple_Buckle": 6.639, "simple_Propeller": 12.596, "bp_simpleParams": [ -6.969, 2.271, -0.027, 6.639, 12.596, -5.365 ], "bp_params": [ -6.519, -3.352, -0.027, -4.290, 13.577, -5.399 ], "frame": { "rmsd": null, "origin": [ 236.477, 146.731, 207.131 ], "x_axis": [ -0.072, -0.992, 0.100 ], "y_axis": [ -0.747, -0.013, -0.665 ], "z_axis": [ 0.661, -0.122, -0.740 ], "quaternion": [ 0.209, -0.648, 0.671, -0.293 ] } }, { "index": 242, "nt1": "///2/565", "nt2": "///2/585", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.612, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.060, "chi2": 174.744, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.584, "C1C1_dist": 11.007, "N1N9_dist": 9.031, "C6C8_dist": 9.761, "CNNC_torsion": 10.253, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.54],N1(imino)-N3[2.82],N2(amino)-O2(carbonyl)[2.98]", "interBase_angle": 15.442, "planarity": 0.179, "simple_Shear": 0.614, "simple_Stretch": -0.203, "simple_Buckle": 4.641, "simple_Propeller": 14.729, "bp_simpleParams": [ 0.614, -0.203, -0.019, 4.641, 14.729, -8.177 ], "bp_params": [ 0.598, -0.244, -0.019, 5.616, 14.385, -8.232 ], "frame": { "rmsd": null, "origin": [ 239.449, 145.583, 206.091 ], "x_axis": [ -0.726, -0.459, -0.512 ], "y_axis": [ -0.264, 0.873, -0.409 ], "z_axis": [ 0.635, -0.162, -0.756 ], "quaternion": [ 0.313, -0.197, 0.916, -0.156 ] } }, { "index": 243, "nt1": "///2/566", "nt2": "///2/584", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.644, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.692, "chi2": -171.489, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.202, "C1C1_dist": 11.242, "N1N9_dist": 9.382, "C6C8_dist": 10.154, "CNNC_torsion": 13.109, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.30],O4(carbonyl)-N6(amino)[3.15]", "interBase_angle": 18.556, "planarity": 0.227, "simple_Shear": -0.025, "simple_Stretch": 0.292, "simple_Buckle": 14.265, "simple_Propeller": 11.867, "bp_simpleParams": [ -0.025, 0.292, -0.510, 14.265, 11.867, -7.714 ], "bp_params": [ -0.025, 0.292, -0.510, 14.275, 11.856, -7.696 ], "frame": { "rmsd": null, "origin": [ 242.408, 142.934, 204.834 ], "x_axis": [ -0.798, -0.075, -0.599 ], "y_axis": [ 0.052, 0.980, -0.191 ], "z_axis": [ 0.601, -0.183, -0.778 ], "quaternion": [ 0.318, -0.006, 0.943, -0.099 ] } }, { "index": 244, "nt1": "///2/567", "nt2": "///2/583", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -160.960, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.504, "chi2": -177.113, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 17.217, "C1C1_dist": 10.854, "N1N9_dist": 9.002, "C6C8_dist": 9.359, "CNNC_torsion": 0.419, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.38]", "interBase_angle": 18.622, "planarity": 0.273, "simple_Shear": 5.150, "simple_Stretch": 0.955, "simple_Buckle": 8.259, "simple_Propeller": -16.691, "bp_simpleParams": [ 5.150, 0.955, -0.975, 8.259, -16.691, -18.137 ], "bp_params": [ 4.889, -1.880, -0.975, -1.732, -18.541, -18.371 ], "frame": { "rmsd": null, "origin": [ 243.800, 140.516, 201.609 ], "x_axis": [ -0.486, 0.781, -0.392 ], "y_axis": [ 0.800, 0.579, 0.160 ], "z_axis": [ 0.352, -0.236, -0.906 ], "quaternion": [ 0.216, 0.458, 0.862, -0.022 ] } }, { "index": 245, "nt1": "///2/568", "nt2": "///2/582", "bp": "C-U", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W-W", "intra_chain": true, "chi1": -172.246, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.203, "chi2": -157.784, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 70.979, "C1C1_dist": 10.417, "N1N9_dist": 8.569, "C6C8_dist": 9.073, "CNNC_torsion": -19.765, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O2(carbonyl)[2.58]", "interBase_angle": 10.997, "planarity": 0.124, "simple_Shear": -5.098, "simple_Stretch": 0.535, "simple_Buckle": -10.396, "simple_Propeller": -3.583, "bp_simpleParams": [ -5.098, 0.535, -0.267, -10.396, -3.583, -20.472 ], "bp_params": [ -4.657, -2.142, -0.267, -7.118, -8.382, -20.487 ], "frame": { "rmsd": null, "origin": [ 242.376, 137.392, 198.007 ], "x_axis": [ -0.703, 0.708, -0.062 ], "y_axis": [ 0.700, 0.705, 0.111 ], "z_axis": [ 0.123, 0.034, -0.992 ], "quaternion": [ 0.050, 0.382, 0.922, 0.039 ] } }, { "index": 246, "nt1": "///2/569", "nt2": "///2/581", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.938, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.579, "chi2": -158.914, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.463, "C1C1_dist": 10.574, "N1N9_dist": 8.900, "C6C8_dist": 9.873, "CNNC_torsion": 0.862, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.87]", "interBase_angle": 9.273, "planarity": 0.103, "simple_Shear": 0.054, "simple_Stretch": -0.054, "simple_Buckle": -9.060, "simple_Propeller": -1.973, "bp_simpleParams": [ 0.054, -0.054, -0.371, -9.060, -1.973, 1.503 ], "bp_params": [ 0.053, -0.055, -0.371, -9.083, -1.866, 1.499 ], "frame": { "rmsd": null, "origin": [ 241.404, 138.705, 194.125 ], "x_axis": [ 0.064, 0.995, 0.080 ], "y_axis": [ 0.988, -0.074, 0.135 ], "z_axis": [ 0.140, 0.070, -0.988 ], "quaternion": [ 0.022, 0.729, 0.680, 0.075 ] } }, { "index": 247, "nt1": "///2/570", "nt2": "///2/580", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 164.621, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.080, "chi2": -174.424, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.432, "C1C1_dist": 11.034, "N1N9_dist": 8.772, "C6C8_dist": 9.297, "CNNC_torsion": -15.159, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[2.84]", "interBase_angle": 14.976, "planarity": 0.222, "simple_Shear": 0.460, "simple_Stretch": -0.562, "simple_Buckle": -14.848, "simple_Propeller": -1.956, "bp_simpleParams": [ 0.460, -0.562, 0.809, -14.848, -1.956, -22.897 ], "bp_params": [ 0.433, -0.583, 0.809, -14.926, -1.231, -22.709 ], "frame": { "rmsd": null, "origin": [ 239.396, 139.601, 190.262 ], "x_axis": [ 0.485, 0.852, 0.197 ], "y_axis": [ 0.846, -0.514, 0.139 ], "z_axis": [ 0.219, 0.099, -0.971 ], "quaternion": [ 0.011, 0.862, 0.493, 0.121 ] } }, { "index": 248, "nt1": "///2/571", "nt2": "///2/579", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.985, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 84.992, "chi2": -175.384, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.489, "C1C1_dist": 10.221, "N1N9_dist": 8.794, "C6C8_dist": 9.680, "CNNC_torsion": -0.626, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.29]", "interBase_angle": 23.911, "planarity": 0.334, "simple_Shear": 5.149, "simple_Stretch": 1.015, "simple_Buckle": -23.756, "simple_Propeller": 2.716, "bp_simpleParams": [ 5.149, 1.015, 1.569, -23.756, 2.716, 5.094 ], "bp_params": [ 4.951, -1.740, 1.569, -19.108, 14.374, 5.065 ], "frame": { "rmsd": null, "origin": [ 240.475, 142.142, 187.403 ], "x_axis": [ 0.961, 0.064, 0.271 ], "y_axis": [ 0.091, -0.992, -0.088 ], "z_axis": [ 0.263, 0.109, -0.959 ], "quaternion": [ -0.050, 0.989, 0.039, 0.135 ] } }, { "index": 249, "nt1": "///2/573", "nt2": "///2/576", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -162.112, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 86.647, "chi2": -176.792, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 33.976, "C1C1_dist": 7.101, "N1N9_dist": 6.233, "C6C8_dist": 6.256, "CNNC_torsion": 178.941, "hbonds_num": 1, "hbonds_desc": "N3(imino)-OP2[2.34]", "interBase_angle": 34.101, "planarity": 0.367, "simple_Shear": 8.839, "simple_Stretch": 5.338, "simple_Buckle": -34.009, "simple_Propeller": 2.498, "bp_simpleParams": [ 8.839, 5.338, 0.591, -34.009, 2.498, -51.376 ], "bp_params": [ 6.170, -8.279, 0.591, -0.887, 34.089, -53.414 ], "frame": { "rmsd": null, "origin": [ 246.381, 146.226, 181.891 ], "x_axis": [ -0.305, -0.886, -0.348 ], "y_axis": [ -0.760, 0.447, -0.472 ], "z_axis": [ 0.573, 0.121, -0.810 ], "quaternion": [ 0.288, -0.514, 0.800, -0.110 ] } }, { "index": 250, "nt1": "///2/596", "nt2": "///2/640", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -142.184, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.377, "chi2": -140.754, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.334, "C1C1_dist": 10.486, "N1N9_dist": 8.744, "C6C8_dist": 9.621, "CNNC_torsion": 12.597, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.93],O4(carbonyl)-N6(amino)[2.98]", "interBase_angle": 13.647, "planarity": 0.380, "simple_Shear": -0.162, "simple_Stretch": -0.354, "simple_Buckle": -12.082, "simple_Propeller": 6.344, "bp_simpleParams": [ -0.162, -0.354, -1.244, -12.082, 6.344, -3.577 ], "bp_params": [ -0.154, -0.357, -1.244, -12.235, 6.045, -3.562 ], "frame": { "rmsd": null, "origin": [ 217.644, 172.127, 205.403 ], "x_axis": [ 0.156, -0.255, 0.954 ], "y_axis": [ 0.927, 0.373, -0.052 ], "z_axis": [ -0.342, 0.892, 0.294 ], "quaternion": [ 0.675, -0.350, -0.480, -0.437 ] } }, { "index": 251, "nt1": "///2/596", "nt2": "///2/641", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -142.184, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 69.604, "chi2": -124.608, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.927, "C1C1_dist": 9.054, "N1N9_dist": 8.030, "C6C8_dist": 9.434, "CNNC_torsion": -3.446, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N1[2.81]", "interBase_angle": 33.132, "planarity": 0.387, "simple_Shear": -0.127, "simple_Stretch": -0.010, "simple_Buckle": -31.019, "simple_Propeller": 11.642, "bp_simpleParams": [ -0.127, -0.010, 1.655, -31.019, 11.642, 30.005 ], "bp_params": [ -0.127, -0.014, 1.655, -31.490, 10.301, 29.047 ], "frame": { "rmsd": null, "origin": [ 218.071, 170.800, 205.058 ], "x_axis": [ -0.136, -0.288, 0.948 ], "y_axis": [ 0.869, 0.425, 0.254 ], "z_axis": [ -0.476, 0.858, 0.192 ], "quaternion": [ 0.608, -0.248, -0.585, -0.475 ] } }, { "index": 252, "nt1": "///2/597", "nt2": "///2/604", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "t.W", "DSSR": "t.+W", "intra_chain": true, "chi1": -171.211, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 81.974, "chi2": -165.001, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.591, "C1C1_dist": 13.690, "N1N9_dist": 12.376, "C6C8_dist": 13.635, "CNNC_torsion": 122.727, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[4.00]", "interBase_angle": 57.391, "planarity": 0.636, "simple_Shear": 2.670, "simple_Stretch": 5.238, "simple_Buckle": 12.607, "simple_Propeller": -55.989, "bp_simpleParams": [ 2.670, 5.238, 1.619, 12.607, -55.989, -132.604 ], "bp_params": [ 4.115, -4.199, 1.619, -56.984, 6.828, -126.992 ], "frame": { "rmsd": null, "origin": [ 214.222, 174.910, 206.405 ], "x_axis": [ 0.940, 0.316, -0.129 ], "y_axis": [ -0.334, 0.771, -0.542 ], "z_axis": [ -0.072, 0.553, 0.830 ], "quaternion": [ 0.941, -0.291, 0.015, 0.173 ] } }, { "index": 253, "nt1": "///2/597", "nt2": "///2/639", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.211, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.480, "chi2": -160.001, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.368, "C1C1_dist": 11.727, "N1N9_dist": 9.970, "C6C8_dist": 10.891, "CNNC_torsion": -16.831, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.93],N1(imino)-N3[3.88],N2(amino)-O2(carbonyl)[3.79]", "interBase_angle": 20.299, "planarity": 0.246, "simple_Shear": 0.060, "simple_Stretch": 0.890, "simple_Buckle": -8.187, "simple_Propeller": -18.575, "bp_simpleParams": [ 0.060, 0.890, 0.149, -8.187, -18.575, -0.431 ], "bp_params": [ 0.074, 0.889, 0.149, -8.441, -18.461, -0.435 ], "frame": { "rmsd": null, "origin": [ 216.465, 174.126, 208.105 ], "x_axis": [ 0.692, -0.377, 0.615 ], "y_axis": [ 0.713, 0.489, -0.502 ], "z_axis": [ -0.111, 0.786, 0.608 ], "quaternion": [ 0.835, -0.386, -0.218, -0.326 ] } }, { "index": 254, "nt1": "///2/598", "nt2": "///2/605", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -176.216, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.577, "chi2": -114.529, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.577, "C1C1_dist": 8.223, "N1N9_dist": 7.840, "C6C8_dist": 10.075, "CNNC_torsion": 159.601, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.48],N2(amino)-N3[3.04]", "interBase_angle": 31.140, "planarity": 0.352, "simple_Shear": 7.033, "simple_Stretch": 3.610, "simple_Buckle": 26.775, "simple_Propeller": -15.898, "bp_simpleParams": [ 7.033, 3.610, 0.945, 26.775, -15.898, -153.218 ], "bp_params": [ -2.703, -7.429, 0.945, -30.408, -6.713, -152.327 ], "frame": { "rmsd": null, "origin": [ 213.051, 177.024, 209.162 ], "x_axis": [ 0.485, 0.541, -0.687 ], "y_axis": [ -0.874, 0.326, -0.360 ], "z_axis": [ 0.029, 0.775, 0.631 ], "quaternion": [ 0.781, -0.363, 0.229, 0.453 ] } }, { "index": 255, "nt1": "///2/598", "nt2": "///2/638", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.216, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.359, "chi2": -162.158, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.192, "C1C1_dist": 10.347, "N1N9_dist": 8.759, "C6C8_dist": 9.865, "CNNC_torsion": -17.706, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.32],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.54]", "interBase_angle": 20.710, "planarity": 0.257, "simple_Shear": -0.755, "simple_Stretch": -0.098, "simple_Buckle": -4.764, "simple_Propeller": -20.154, "bp_simpleParams": [ -0.755, -0.098, 0.140, -4.764, -20.154, 8.830 ], "bp_params": [ -0.747, -0.148, 0.140, -3.349, -20.437, 8.968 ], "frame": { "rmsd": null, "origin": [ 216.038, 175.380, 211.740 ], "x_axis": [ 0.941, -0.159, 0.299 ], "y_axis": [ 0.331, 0.622, -0.710 ], "z_axis": [ -0.073, 0.767, 0.638 ], "quaternion": [ 0.895, -0.413, -0.104, -0.137 ] } }, { "index": 256, "nt1": "///2/599", "nt2": "///2/637", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.011, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.865, "chi2": -165.380, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.620, "C1C1_dist": 10.792, "N1N9_dist": 9.155, "C6C8_dist": 10.171, "CNNC_torsion": -10.358, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.42],N1-N3(imino)[3.17]", "interBase_angle": 20.630, "planarity": 0.238, "simple_Shear": 0.587, "simple_Stretch": 0.321, "simple_Buckle": -13.016, "simple_Propeller": -16.005, "bp_simpleParams": [ 0.587, 0.321, -0.182, -13.016, -16.005, 4.061 ], "bp_params": [ 0.609, 0.277, -0.182, -14.133, -15.028, 4.066 ], "frame": { "rmsd": null, "origin": [ 215.140, 177.401, 215.272 ], "x_axis": [ 0.931, 0.278, -0.235 ], "y_axis": [ -0.359, 0.591, -0.722 ], "z_axis": [ -0.062, 0.757, 0.651 ], "quaternion": [ 0.891, -0.415, 0.049, 0.179 ] } }, { "index": 257, "nt1": "///2/600", "nt2": "///2/622", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.077, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.155, "chi2": -156.835, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.894, "C1C1_dist": 10.734, "N1N9_dist": 8.956, "C6C8_dist": 9.874, "CNNC_torsion": 0.968, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 4.020, "planarity": 0.099, "simple_Shear": -0.184, "simple_Stretch": -0.158, "simple_Buckle": -2.589, "simple_Propeller": -3.075, "bp_simpleParams": [ -0.184, -0.158, -0.470, -2.589, -3.075, 0.014 ], "bp_params": [ -0.182, -0.161, -0.470, -2.548, -3.109, 0.014 ], "frame": { "rmsd": null, "origin": [ 207.234, 190.030, 205.428 ], "x_axis": [ 0.989, 0.001, -0.146 ], "y_axis": [ 0.112, -0.647, 0.754 ], "z_axis": [ -0.094, -0.763, -0.640 ], "quaternion": [ 0.419, 0.905, 0.031, -0.066 ] } }, { "index": 258, "nt1": "///2/601", "nt2": "///2/621", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.485, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.844, "chi2": -158.418, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.728, "C1C1_dist": 10.745, "N1N9_dist": 8.918, "C6C8_dist": 9.794, "CNNC_torsion": 12.604, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 9.132, "planarity": 0.199, "simple_Shear": -0.149, "simple_Stretch": -0.257, "simple_Buckle": 0.047, "simple_Propeller": 9.131, "bp_simpleParams": [ -0.149, -0.257, -0.786, 0.047, 9.131, -2.765 ], "bp_params": [ -0.147, -0.258, -0.786, -0.047, 9.131, -2.773 ], "frame": { "rmsd": null, "origin": [ 206.734, 188.119, 202.305 ], "x_axis": [ 0.900, -0.228, 0.372 ], "y_axis": [ -0.435, -0.544, 0.717 ], "z_axis": [ 0.039, -0.807, -0.589 ], "quaternion": [ 0.438, 0.871, -0.190, 0.118 ] } }, { "index": 259, "nt1": "///2/603", "nt2": "///2/605", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -129.020, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 112.897, "chi2": -114.529, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.617, "C1C1_dist": 10.001, "N1N9_dist": 9.306, "C6C8_dist": 10.053, "CNNC_torsion": 64.514, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.46]", "interBase_angle": 40.925, "planarity": 0.560, "simple_Shear": 0.951, "simple_Stretch": 5.213, "simple_Buckle": -17.505, "simple_Propeller": -36.993, "bp_simpleParams": [ 0.951, 5.213, -0.614, -17.505, -36.993, -55.816 ], "bp_params": [ 4.894, -2.031, -0.614, -32.728, 24.572, -55.011 ], "frame": { "rmsd": null, "origin": [ 210.595, 179.976, 204.318 ], "x_axis": [ -0.336, 0.560, -0.757 ], "y_axis": [ -0.941, -0.243, 0.237 ], "z_axis": [ -0.051, 0.792, 0.609 ], "quaternion": [ 0.507, -0.273, 0.348, 0.740 ] } }, { "index": 260, "nt1": "///2/603", "nt2": "///2/620", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "--", "DSSR": "--", "intra_chain": true, "chi1": -129.020, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 10.178, "chi2": -68.270, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 9.808, "C1C1_dist": 14.116, "N1N9_dist": 11.225, "C6C8_dist": 9.864, "CNNC_torsion": -134.503, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O6(carbonyl)[2.81]", "interBase_angle": 61.847, "planarity": 0.602, "simple_Shear": -0.910, "simple_Stretch": 4.102, "simple_Buckle": 4.895, "simple_Propeller": 61.653, "bp_simpleParams": [ -0.910, 4.102, 1.432, 4.895, 61.653, -106.542 ], "bp_params": [ -1.603, 3.884, 1.432, -6.274, 61.528, -114.579 ], "frame": { "rmsd": null, "origin": [ 211.301, 182.374, 200.147 ], "x_axis": [ -0.776, 0.502, -0.381 ], "y_axis": [ -0.628, -0.562, 0.539 ], "z_axis": [ 0.056, 0.658, 0.751 ], "quaternion": [ 0.321, -0.093, 0.340, 0.879 ] } }, { "index": 261, "nt1": "///2/606", "nt2": "///2/636", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 80.331, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 33.280, "chi2": -166.294, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.822, "C1C1_dist": 10.922, "N1N9_dist": 8.704, "C6C8_dist": 8.129, "CNNC_torsion": -3.712, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.70]", "interBase_angle": 8.992, "planarity": 0.111, "simple_Shear": -3.716, "simple_Stretch": 1.354, "simple_Buckle": 7.773, "simple_Propeller": 4.521, "bp_simpleParams": [ -3.716, 1.354, 0.199, 7.773, 4.521, 101.674 ], "bp_params": [ 0.628, -3.905, 0.199, -7.733, 4.589, 101.592 ], "frame": { "rmsd": null, "origin": [ 214.214, 179.389, 217.665 ], "x_axis": [ 0.967, 0.105, -0.232 ], "y_axis": [ 0.248, -0.599, 0.761 ], "z_axis": [ -0.059, -0.794, -0.606 ], "quaternion": [ 0.436, 0.890, 0.099, -0.082 ] } }, { "index": 262, "nt1": "///2/608", "nt2": "///2/635", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.812, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.082, "chi2": -170.413, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.418, "C1C1_dist": 10.736, "N1N9_dist": 8.928, "C6C8_dist": 9.847, "CNNC_torsion": 3.081, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 8.857, "planarity": 0.155, "simple_Shear": 0.195, "simple_Stretch": -0.173, "simple_Buckle": 2.240, "simple_Propeller": 8.569, "bp_simpleParams": [ 0.195, -0.173, 0.308, 2.240, 8.569, 0.450 ], "bp_params": [ 0.193, -0.176, 0.308, 2.366, 8.535, 0.451 ], "frame": { "rmsd": null, "origin": [ 216.577, 180.877, 220.721 ], "x_axis": [ -0.077, 0.515, -0.854 ], "y_axis": [ -0.991, 0.051, 0.120 ], "z_axis": [ 0.106, 0.856, 0.507 ], "quaternion": [ 0.608, -0.302, 0.394, 0.619 ] } }, { "index": 263, "nt1": "///2/609", "nt2": "///2/634", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.541, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.269, "chi2": 177.016, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.711, "C1C1_dist": 10.587, "N1N9_dist": 8.870, "C6C8_dist": 9.828, "CNNC_torsion": 0.274, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.86],O4(carbonyl)-N6(amino)[2.98]", "interBase_angle": 6.962, "planarity": 0.135, "simple_Shear": -0.006, "simple_Stretch": -0.111, "simple_Buckle": 5.940, "simple_Propeller": 3.632, "bp_simpleParams": [ -0.006, -0.111, 0.333, 5.940, 3.632, 1.089 ], "bp_params": [ -0.005, -0.111, 0.333, 5.923, 3.660, 1.088 ], "frame": { "rmsd": null, "origin": [ 218.211, 184.137, 220.844 ], "x_axis": [ -0.627, 0.385, -0.678 ], "y_axis": [ -0.773, -0.200, 0.601 ], "z_axis": [ 0.096, 0.901, 0.423 ], "quaternion": [ 0.386, -0.194, 0.501, 0.750 ] } }, { "index": 264, "nt1": "///2/610", "nt2": "///2/633", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.577, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.103, "chi2": -161.332, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.639, "C1C1_dist": 10.647, "N1N9_dist": 8.924, "C6C8_dist": 9.886, "CNNC_torsion": -3.455, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 8.522, "planarity": 0.134, "simple_Shear": -0.201, "simple_Stretch": -0.144, "simple_Buckle": -1.980, "simple_Propeller": -8.289, "bp_simpleParams": [ -0.201, -0.144, -0.393, -1.980, -8.289, 1.990 ], "bp_params": [ -0.199, -0.147, -0.393, -1.856, -8.317, 1.995 ], "frame": { "rmsd": null, "origin": [ 219.182, 187.467, 220.379 ], "x_axis": [ -0.915, -0.183, -0.359 ], "y_axis": [ -0.319, -0.216, 0.923 ], "z_axis": [ -0.246, 0.959, 0.140 ], "quaternion": [ 0.045, -0.201, 0.624, 0.754 ] } }, { "index": 265, "nt1": "///2/611", "nt2": "///2/632", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.666, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.523, "chi2": -167.434, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.922, "C1C1_dist": 10.668, "N1N9_dist": 8.857, "C6C8_dist": 9.711, "CNNC_torsion": 2.081, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 25.952, "planarity": 0.300, "simple_Shear": -0.158, "simple_Stretch": -0.074, "simple_Buckle": -25.764, "simple_Propeller": -3.119, "bp_simpleParams": [ -0.158, -0.074, -0.612, -25.764, -3.119, -1.466 ], "bp_params": [ -0.157, -0.075, -0.612, -25.745, -3.269, -1.430 ], "frame": { "rmsd": null, "origin": [ 217.886, 191.254, 218.975 ], "x_axis": [ -0.800, -0.543, 0.255 ], "y_axis": [ 0.310, -0.010, 0.951 ], "z_axis": [ -0.514, 0.840, 0.176 ], "quaternion": [ -0.302, -0.092, 0.635, 0.705 ] } }, { "index": 266, "nt1": "///2/612", "nt2": "///2/615", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.073, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 105.470, "chi2": -169.883, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.032, "C1C1_dist": 7.903, "N1N9_dist": 7.304, "C6C8_dist": 8.955, "CNNC_torsion": -17.312, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[2.93]", "interBase_angle": 23.315, "planarity": 0.314, "simple_Shear": 4.146, "simple_Stretch": 0.742, "simple_Buckle": 23.027, "simple_Propeller": 3.649, "bp_simpleParams": [ 4.146, 0.742, 1.396, 23.027, 3.649, 46.143 ], "bp_params": [ 4.037, -1.199, 1.396, 22.199, -7.127, 45.449 ], "frame": { "rmsd": null, "origin": [ 218.794, 196.427, 217.672 ], "x_axis": [ -0.798, -0.581, 0.157 ], "y_axis": [ 0.545, -0.588, 0.598 ], "z_axis": [ -0.255, 0.563, 0.786 ], "quaternion": [ -0.316, -0.027, 0.326, 0.891 ] } }, { "index": 267, "nt1": "///2/616", "nt2": "///2/625", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -161.066, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.119, "chi2": -164.362, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 91.454, "C1C1_dist": 9.948, "N1N9_dist": 8.643, "C6C8_dist": 9.093, "CNNC_torsion": -54.860, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.57],N6(amino)-N3[2.81]", "interBase_angle": 24.177, "planarity": 0.416, "simple_Shear": -6.761, "simple_Stretch": 2.104, "simple_Buckle": -6.916, "simple_Propeller": 23.167, "bp_simpleParams": [ -6.761, 2.104, 1.070, -6.916, 23.167, -3.789 ], "bp_params": [ -6.277, -3.277, 1.070, -21.202, 11.620, -3.744 ], "frame": { "rmsd": null, "origin": [ 217.407, 198.161, 211.696 ], "x_axis": [ -0.703, 0.525, -0.480 ], "y_axis": [ 0.703, 0.613, -0.360 ], "z_axis": [ 0.105, -0.591, -0.800 ], "quaternion": [ 0.166, 0.348, 0.882, -0.270 ] } }, { "index": 268, "nt1": "///2/616", "nt2": "///2/629", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -161.066, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 39.373, "chi2": -108.510, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 13.138, "C1C1_dist": 13.737, "N1N9_dist": 11.233, "C6C8_dist": 11.093, "CNNC_torsion": -143.375, "hbonds_num": 1, "hbonds_desc": "N1-N6(amino)[3.22]", "interBase_angle": 69.879, "planarity": 0.744, "simple_Shear": -0.592, "simple_Stretch": 2.333, "simple_Buckle": -38.745, "simple_Propeller": 58.154, "bp_simpleParams": [ -0.592, 2.333, 0.515, -38.745, 58.154, -146.356 ], "bp_params": [ 2.208, 0.957, 0.515, 52.454, 46.170, -145.034 ], "frame": { "rmsd": null, "origin": [ 217.485, 194.742, 213.861 ], "x_axis": [ 0.513, 0.606, -0.609 ], "y_axis": [ 0.776, -0.024, 0.630 ], "z_axis": [ 0.367, -0.795, -0.482 ], "quaternion": [ 0.502, 0.710, 0.486, -0.085 ] } }, { "index": 269, "nt1": "///2/617", "nt2": "///2/624", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.239, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.201, "chi2": -160.386, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.520, "C1C1_dist": 10.703, "N1N9_dist": 8.961, "C6C8_dist": 9.899, "CNNC_torsion": 4.326, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 6.322, "planarity": 0.089, "simple_Shear": -0.191, "simple_Stretch": -0.128, "simple_Buckle": 0.376, "simple_Propeller": 6.311, "bp_simpleParams": [ -0.191, -0.128, 0.143, 0.376, 6.311, 0.536 ], "bp_params": [ -0.189, -0.131, 0.143, 0.286, 6.316, 0.537 ], "frame": { "rmsd": null, "origin": [ 215.610, 196.487, 209.021 ], "x_axis": [ -0.135, 0.852, -0.506 ], "y_axis": [ 0.990, 0.137, -0.033 ], "z_axis": [ 0.041, -0.505, -0.862 ], "quaternion": [ 0.187, 0.630, 0.730, -0.184 ] } }, { "index": 270, "nt1": "///2/618", "nt2": "///2/623", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.592, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.780, "chi2": -179.185, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.295, "C1C1_dist": 10.476, "N1N9_dist": 8.869, "C6C8_dist": 9.892, "CNNC_torsion": 4.909, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 8.780, "planarity": 0.150, "simple_Shear": 0.213, "simple_Stretch": -0.130, "simple_Buckle": 3.971, "simple_Propeller": 7.830, "bp_simpleParams": [ 0.213, -0.130, 0.201, 3.971, 7.830, 3.862 ], "bp_params": [ 0.211, -0.134, 0.201, 4.108, 7.759, 3.869 ], "frame": { "rmsd": null, "origin": [ 213.329, 195.526, 205.498 ], "x_axis": [ 0.412, 0.810, -0.417 ], "y_axis": [ 0.908, -0.326, 0.262 ], "z_axis": [ 0.076, -0.487, -0.870 ], "quaternion": [ 0.232, 0.807, 0.532, -0.106 ] } }, { "index": 271, "nt1": "///2/623", "nt2": "///2/631", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -179.185, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 95.952, "chi2": -141.801, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 49.322, "C1C1_dist": 9.180, "N1N9_dist": 8.740, "C6C8_dist": 10.891, "CNNC_torsion": 152.592, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.61]", "interBase_angle": 34.490, "planarity": 0.410, "simple_Shear": 6.160, "simple_Stretch": 3.997, "simple_Buckle": 23.176, "simple_Propeller": -25.543, "bp_simpleParams": [ 6.160, 3.997, 1.215, 23.176, -25.543, -136.139 ], "bp_params": [ -1.144, -7.254, 1.215, -34.490, -0.114, -134.283 ], "frame": { "rmsd": null, "origin": [ 210.303, 193.825, 207.039 ], "x_axis": [ -0.697, 0.564, -0.444 ], "y_axis": [ -0.705, -0.423, 0.570 ], "z_axis": [ 0.133, 0.710, 0.692 ], "quaternion": [ 0.378, -0.093, 0.382, 0.838 ] } }, { "index": 272, "nt1": "///2/656", "nt2": "///2/1156", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -100.407, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 41.138, "chi2": -118.147, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 60.379, "C1C1_dist": 10.866, "N1N9_dist": 9.040, "C6C8_dist": 9.827, "CNNC_torsion": 4.661, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.97],N1(imino)-O2(carbonyl)[3.08]", "interBase_angle": 3.893, "planarity": 0.058, "simple_Shear": -1.773, "simple_Stretch": -0.011, "simple_Buckle": -2.203, "simple_Propeller": 3.209, "bp_simpleParams": [ -1.773, -0.011, -0.212, -2.203, 3.209, -6.129 ], "bp_params": [ -1.744, -0.318, -0.212, -2.725, 2.779, -6.129 ], "frame": { "rmsd": null, "origin": [ 188.525, 179.951, 176.006 ], "x_axis": [ 0.043, -0.987, 0.156 ], "y_axis": [ 0.861, 0.116, 0.496 ], "z_axis": [ -0.508, 0.113, 0.854 ], "quaternion": [ 0.709, 0.135, -0.234, -0.651 ] } }, { "index": 273, "nt1": "///2/659", "nt2": "///2/1165", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 97.406, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 10.516, "chi2": 71.268, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 28.644, "C1C1_dist": 12.134, "N1N9_dist": 9.440, "C6C8_dist": 7.834, "CNNC_torsion": -175.965, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)*N7[2.93],N1(imino)-O6(carbonyl)[3.36]", "unusual_base2base_hbonds": 1, "interBase_angle": 5.352, "planarity": 0.200, "simple_Shear": 2.769, "simple_Stretch": 3.515, "simple_Buckle": 4.266, "simple_Propeller": 3.232, "bp_simpleParams": [ 2.769, 3.515, 0.970, 4.266, 3.232, -117.545 ], "bp_params": [ 4.237, 1.438, 0.970, 5.338, 0.384, -117.490 ], "frame": { "rmsd": null, "origin": [ 197.853, 192.778, 171.973 ], "x_axis": [ -0.179, -0.639, 0.748 ], "y_axis": [ -0.464, -0.616, -0.637 ], "z_axis": [ 0.868, -0.461, -0.186 ], "quaternion": [ -0.069, 0.637, -0.433, 0.634 ] } }, { "index": 274, "nt1": "///2/663", "nt2": "///2/1164", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.406, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.709, "chi2": -160.540, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.000, "C1C1_dist": 10.787, "N1N9_dist": 8.941, "C6C8_dist": 9.841, "CNNC_torsion": -3.786, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 2.639, "planarity": 0.070, "simple_Shear": 0.190, "simple_Stretch": -0.174, "simple_Buckle": 0.801, "simple_Propeller": 2.514, "bp_simpleParams": [ 0.190, -0.174, 0.209, 0.801, 2.514, -0.502 ], "bp_params": [ 0.187, -0.176, 0.209, 0.837, 2.502, -0.502 ], "frame": { "rmsd": null, "origin": [ 193.871, 193.319, 171.693 ], "x_axis": [ -0.068, -0.138, -0.988 ], "y_axis": [ -0.261, -0.953, 0.152 ], "z_axis": [ -0.963, 0.268, 0.029 ], "quaternion": [ 0.043, -0.681, 0.147, 0.716 ] } }, { "index": 275, "nt1": "///2/664", "nt2": "///2/1163", "bp": "A-C", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.910, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.188, "chi2": -160.702, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 71.491, "C1C1_dist": 10.464, "N1N9_dist": 8.955, "C6C8_dist": 10.012, "CNNC_torsion": -24.763, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.30],N1*O2(carbonyl)[2.84]", "unusual_base2base_hbonds": 1, "interBase_angle": 25.368, "planarity": 0.338, "simple_Shear": -2.650, "simple_Stretch": 0.495, "simple_Buckle": -17.170, "simple_Propeller": -18.674, "bp_simpleParams": [ -2.650, 0.495, 0.448, -17.170, -18.674, 9.177 ], "bp_params": [ -2.689, -0.191, 0.448, -11.878, -22.415, 9.307 ], "frame": { "rmsd": null, "origin": [ 192.083, 195.406, 168.515 ], "x_axis": [ 0.122, -0.592, -0.796 ], "y_axis": [ -0.370, -0.772, 0.518 ], "z_axis": [ -0.921, 0.231, -0.313 ], "quaternion": [ 0.096, 0.743, -0.324, -0.578 ] } }, { "index": 276, "nt1": "///2/665", "nt2": "///2/1162", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -149.772, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.083, "chi2": -159.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.185, "C1C1_dist": 10.576, "N1N9_dist": 8.907, "C6C8_dist": 9.881, "CNNC_torsion": -1.367, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 10.612, "planarity": 0.159, "simple_Shear": -0.209, "simple_Stretch": -0.152, "simple_Buckle": -7.808, "simple_Propeller": -7.187, "bp_simpleParams": [ -0.209, -0.152, -0.720, -7.808, -7.187, 2.655 ], "bp_params": [ -0.207, -0.155, -0.720, -7.708, -7.294, 2.655 ], "frame": { "rmsd": null, "origin": [ 189.643, 197.623, 166.806 ], "x_axis": [ -0.120, -0.970, -0.211 ], "y_axis": [ -0.427, -0.141, 0.893 ], "z_axis": [ -0.896, 0.197, -0.398 ], "quaternion": [ 0.292, 0.596, -0.587, -0.465 ] } }, { "index": 277, "nt1": "///2/666", "nt2": "///2/1145", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.209, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.806, "chi2": -157.635, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.489, "C1C1_dist": 10.851, "N1N9_dist": 8.976, "C6C8_dist": 9.843, "CNNC_torsion": -4.414, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.90],O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 8.014, "planarity": 0.140, "simple_Shear": -0.084, "simple_Stretch": -0.093, "simple_Buckle": -4.267, "simple_Propeller": -6.783, "bp_simpleParams": [ -0.084, -0.093, -0.365, -4.267, -6.783, -2.233 ], "bp_params": [ -0.083, -0.094, -0.365, -4.181, -6.837, -2.235 ], "frame": { "rmsd": null, "origin": [ 179.229, 201.204, 181.288 ], "x_axis": [ -0.243, -0.949, -0.202 ], "y_axis": [ 0.412, 0.088, -0.907 ], "z_axis": [ 0.878, -0.303, 0.369 ], "quaternion": [ 0.551, -0.274, 0.490, -0.617 ] } }, { "index": 278, "nt1": "///2/667", "nt2": "///2/1144", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.591, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.023, "chi2": -155.708, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.353, "C1C1_dist": 10.543, "N1N9_dist": 8.834, "C6C8_dist": 9.795, "CNNC_torsion": -2.017, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 6.667, "planarity": 0.147, "simple_Shear": -0.077, "simple_Stretch": -0.149, "simple_Buckle": -4.228, "simple_Propeller": -5.154, "bp_simpleParams": [ -0.077, -0.149, -0.466, -4.228, -5.154, 1.444 ], "bp_params": [ -0.075, -0.150, -0.466, -4.165, -5.205, 1.445 ], "frame": { "rmsd": null, "origin": [ 181.918, 199.953, 183.397 ], "x_axis": [ 0.024, -0.696, -0.717 ], "y_axis": [ 0.475, 0.639, -0.605 ], "z_axis": [ 0.880, -0.326, 0.346 ], "quaternion": [ 0.709, -0.098, 0.563, -0.413 ] } }, { "index": 279, "nt1": "///2/668", "nt2": "///2/670", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM-W", "intra_chain": true, "chi1": -92.299, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.953, "chi2": -107.855, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 27.632, "C1C1_dist": 10.839, "N1N9_dist": 9.016, "C6C8_dist": 7.339, "CNNC_torsion": 63.405, "hbonds_num": 1, "hbonds_desc": "N7-N6(amino)[3.58]", "interBase_angle": 57.890, "planarity": 0.671, "simple_Shear": 0.300, "simple_Stretch": 7.256, "simple_Buckle": 14.642, "simple_Propeller": -56.008, "bp_simpleParams": [ 0.300, 7.256, 0.224, 14.642, -56.008, 175.664 ], "bp_params": [ 5.458, -4.790, 0.224, -52.319, 24.779, 175.258 ], "frame": { "rmsd": null, "origin": [ 189.034, 197.248, 180.645 ], "x_axis": [ -0.305, -0.841, 0.447 ], "y_axis": [ 0.299, -0.530, -0.793 ], "z_axis": [ 0.904, -0.108, 0.413 ], "quaternion": [ -0.380, 0.451, -0.301, 0.750 ] } }, { "index": 280, "nt1": "///2/668", "nt2": "///2/1197", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -92.299, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 155.720, "chi2": 178.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 101.702, "C1C1_dist": 5.587, "N1N9_dist": 7.315, "C6C8_dist": 9.828, "CNNC_torsion": -28.977, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.52],N3-N2(amino)[3.16]", "interBase_angle": 18.680, "planarity": 0.319, "simple_Shear": 0.515, "simple_Stretch": 7.746, "simple_Buckle": 15.954, "simple_Propeller": 9.717, "bp_simpleParams": [ 0.515, 7.746, -1.849, 15.954, 9.717, 156.647 ], "bp_params": [ 2.702, 7.278, -1.849, 18.071, 4.732, 156.380 ], "frame": { "rmsd": null, "origin": [ 189.630, 197.539, 186.973 ], "x_axis": [ -0.475, -0.848, 0.236 ], "y_axis": [ -0.165, -0.177, -0.970 ], "z_axis": [ 0.864, -0.500, -0.056 ], "quaternion": [ -0.270, 0.435, -0.582, 0.632 ] } }, { "index": 281, "nt1": "///2/671", "nt2": "///2/1161", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -67.308, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 61.521, "chi2": -179.433, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.772, "C1C1_dist": 10.232, "N1N9_dist": 8.700, "C6C8_dist": 9.793, "CNNC_torsion": 2.153, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.06],N1-N3(imino)[2.78]", "interBase_angle": 8.553, "planarity": 0.113, "simple_Shear": 0.080, "simple_Stretch": -0.128, "simple_Buckle": -8.447, "simple_Propeller": -1.340, "bp_simpleParams": [ 0.080, -0.128, -0.552, -8.447, -1.340, 6.375 ], "bp_params": [ 0.079, -0.129, -0.552, -8.464, -1.226, 6.358 ], "frame": { "rmsd": null, "origin": [ 187.120, 198.150, 163.820 ], "x_axis": [ -0.309, -0.824, 0.475 ], "y_axis": [ -0.241, 0.551, 0.799 ], "z_axis": [ -0.920, 0.132, -0.369 ], "quaternion": [ -0.467, -0.357, 0.747, 0.312 ] } }, { "index": 282, "nt1": "///2/673", "nt2": "///2/1032", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.132, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.702, "chi2": -166.518, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.252, "C1C1_dist": 10.697, "N1N9_dist": 8.940, "C6C8_dist": 9.862, "CNNC_torsion": 9.453, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 10.961, "planarity": 0.151, "simple_Shear": -0.150, "simple_Stretch": -0.151, "simple_Buckle": -8.241, "simple_Propeller": 7.228, "bp_simpleParams": [ -0.150, -0.151, -0.524, -8.241, 7.228, -0.512 ], "bp_params": [ -0.148, -0.153, -0.524, -8.334, 7.120, -0.511 ], "frame": { "rmsd": null, "origin": [ 188.360, 215.454, 156.425 ], "x_axis": [ 0.965, -0.139, -0.224 ], "y_axis": [ 0.150, -0.409, 0.900 ], "z_axis": [ -0.217, -0.902, -0.374 ], "quaternion": [ 0.543, 0.829, 0.003, -0.133 ] } }, { "index": 283, "nt1": "///2/674", "nt2": "///2/1031", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.224, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.773, "chi2": -169.972, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.443, "C1C1_dist": 10.956, "N1N9_dist": 9.165, "C6C8_dist": 10.006, "CNNC_torsion": 16.243, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*N1[3.25],N3-N6(amino)[3.21]", "unusual_base2base_hbonds": 1, "interBase_angle": 16.739, "planarity": 0.212, "simple_Shear": 1.578, "simple_Stretch": 0.169, "simple_Buckle": -3.290, "simple_Propeller": 16.413, "bp_simpleParams": [ 1.578, 0.169, -0.303, -3.290, 16.413, -2.769 ], "bp_params": [ 1.585, -0.076, -0.303, -0.705, 16.724, -2.799 ], "frame": { "rmsd": null, "origin": [ 187.680, 213.066, 153.747 ], "x_axis": [ 0.876, -0.286, 0.389 ], "y_axis": [ -0.461, -0.252, 0.851 ], "z_axis": [ -0.145, -0.924, -0.352 ], "quaternion": [ 0.564, 0.787, -0.237, 0.077 ] } }, { "index": 284, "nt1": "///2/675", "nt2": "///2/1030", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.964, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.606, "chi2": -170.633, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.233, "C1C1_dist": 10.628, "N1N9_dist": 9.026, "C6C8_dist": 10.088, "CNNC_torsion": 16.782, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N1[3.07]", "interBase_angle": 17.254, "planarity": 0.224, "simple_Shear": -0.903, "simple_Stretch": 0.196, "simple_Buckle": 7.031, "simple_Propeller": 15.756, "bp_simpleParams": [ -0.903, 0.196, -0.498, 7.031, 15.756, 4.976 ], "bp_params": [ -0.917, 0.111, -0.498, 5.503, 16.353, 5.021 ], "frame": { "rmsd": null, "origin": [ 189.166, 210.085, 151.562 ], "x_axis": [ 0.670, -0.328, 0.666 ], "y_axis": [ -0.734, -0.160, 0.660 ], "z_axis": [ -0.110, -0.931, -0.348 ], "quaternion": [ 0.539, 0.738, -0.360, 0.188 ] } }, { "index": 285, "nt1": "///2/676", "nt2": "///2/1029", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.998, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.278, "chi2": -167.049, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.701, "C1C1_dist": 11.119, "N1N9_dist": 9.362, "C6C8_dist": 10.275, "CNNC_torsion": 4.313, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.22],N3-N1(imino)[3.32],N4(amino)-O6(carbonyl)[3.26]", "interBase_angle": 3.656, "planarity": 0.190, "simple_Shear": -0.291, "simple_Stretch": 0.224, "simple_Buckle": -1.263, "simple_Propeller": -3.431, "bp_simpleParams": [ -0.291, 0.224, -0.793, -1.263, -3.431, -0.336 ], "bp_params": [ -0.298, 0.214, -0.793, -1.148, -3.471, -0.337 ], "frame": { "rmsd": null, "origin": [ 190.634, 207.044, 149.616 ], "x_axis": [ 0.159, -0.224, 0.961 ], "y_axis": [ -0.987, -0.066, 0.148 ], "z_axis": [ 0.031, -0.972, -0.232 ], "quaternion": [ 0.464, 0.604, -0.502, 0.411 ] } }, { "index": 286, "nt1": "///2/677", "nt2": "///2/1028", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -166.271, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 90.364, "chi2": -168.915, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 9.308, "C1C1_dist": 10.239, "N1N9_dist": 8.883, "C6C8_dist": 9.281, "CNNC_torsion": 80.661, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.83],N3-N6(amino)[3.00]", "interBase_angle": 1.457, "planarity": 0.125, "simple_Shear": 7.169, "simple_Stretch": 2.546, "simple_Buckle": 0.479, "simple_Propeller": -1.376, "bp_simpleParams": [ 7.169, 2.546, -0.632, 0.479, -1.376, -8.604 ], "bp_params": [ 6.757, -3.496, -0.632, -0.678, -1.290, -8.604 ], "frame": { "rmsd": null, "origin": [ 191.829, 203.517, 148.320 ], "x_axis": [ -0.755, -0.155, 0.637 ], "y_axis": [ -0.656, 0.177, -0.734 ], "z_axis": [ 0.001, -0.972, -0.235 ], "quaternion": [ -0.216, -0.276, 0.736, -0.579 ] } }, { "index": 287, "nt1": "///2/678", "nt2": "///2/1027", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -156.736, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 28.131, "chi2": 170.787, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 22.327, "C1C1_dist": 9.651, "N1N9_dist": 7.091, "C6C8_dist": 6.062, "CNNC_torsion": 167.894, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.99],N3(imino)-N7[2.83]", "interBase_angle": 4.414, "planarity": 0.247, "simple_Shear": 4.119, "simple_Stretch": 1.059, "simple_Buckle": -2.534, "simple_Propeller": -3.614, "bp_simpleParams": [ 4.119, 1.059, -1.262, -2.534, -3.614, -99.987 ], "bp_params": [ 3.806, -1.897, -1.262, -4.282, -1.072, -99.950 ], "frame": { "rmsd": null, "origin": [ 197.556, 199.301, 147.718 ], "x_axis": [ -0.991, 0.130, 0.038 ], "y_axis": [ -0.044, -0.048, -0.998 ], "z_axis": [ -0.128, -0.990, 0.053 ], "quaternion": [ 0.060, -0.031, -0.687, 0.723 ] } }, { "index": 288, "nt1": "///2/679", "nt2": "///2/1026", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 163.957, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 4.055, "chi2": -165.749, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.823, "C1C1_dist": 9.855, "N1N9_dist": 8.010, "C6C8_dist": 7.950, "CNNC_torsion": -173.034, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.60]", "interBase_angle": 18.277, "planarity": 0.229, "simple_Shear": -6.821, "simple_Stretch": 1.576, "simple_Buckle": -18.182, "simple_Propeller": 1.860, "bp_simpleParams": [ -6.821, 1.576, -1.293, -18.182, 1.860, -39.743 ], "bp_params": [ -5.813, -3.901, -1.293, -13.777, -12.011, -39.681 ], "frame": { "rmsd": null, "origin": [ 191.540, 197.059, 149.167 ], "x_axis": [ -0.816, 0.569, -0.098 ], "y_axis": [ 0.084, -0.050, -0.995 ], "z_axis": [ -0.571, -0.821, -0.007 ], "quaternion": [ 0.178, -0.245, -0.666, 0.682 ] } }, { "index": 289, "nt1": "///2/680", "nt2": "///2/1025", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.622, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.618, "chi2": -143.430, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.851, "C1C1_dist": 11.500, "N1N9_dist": 9.616, "C6C8_dist": 10.299, "CNNC_torsion": 16.790, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.70],N1(imino)-O2(carbonyl)[3.94]", "interBase_angle": 15.380, "planarity": 0.276, "simple_Shear": -1.321, "simple_Stretch": 0.382, "simple_Buckle": -14.234, "simple_Propeller": 5.824, "bp_simpleParams": [ -1.321, 0.382, -1.610, -14.234, 5.824, -11.457 ], "bp_params": [ -1.360, 0.204, -1.610, -14.885, 3.871, -11.368 ], "frame": { "rmsd": null, "origin": [ 188.353, 194.522, 150.426 ], "x_axis": [ -0.406, 0.351, -0.844 ], "y_axis": [ 0.713, -0.455, -0.533 ], "z_axis": [ -0.571, -0.818, -0.066 ], "quaternion": [ -0.135, -0.528, -0.504, 0.670 ] } }, { "index": 290, "nt1": "///2/681", "nt2": "///2/1024", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.846, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.418, "chi2": -155.385, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.580, "C1C1_dist": 11.060, "N1N9_dist": 9.300, "C6C8_dist": 10.189, "CNNC_torsion": 19.168, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.64],O4(carbonyl)-N6(amino)[3.75]", "interBase_angle": 13.050, "planarity": 0.300, "simple_Shear": 1.201, "simple_Stretch": 0.267, "simple_Buckle": -5.976, "simple_Propeller": 11.601, "bp_simpleParams": [ 1.201, 0.267, -1.098, -5.976, 11.601, -2.819 ], "bp_params": [ 1.224, 0.128, -1.098, -4.599, 12.213, -2.833 ], "frame": { "rmsd": null, "origin": [ 185.536, 192.184, 149.821 ], "x_axis": [ 0.154, 0.126, -0.980 ], "y_axis": [ 0.862, -0.502, 0.071 ], "z_axis": [ -0.483, -0.856, -0.186 ], "quaternion": [ 0.341, 0.679, 0.364, -0.539 ] } }, { "index": 291, "nt1": "///2/682", "nt2": "///2/1023", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.553, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.056, "chi2": -168.121, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.655, "C1C1_dist": 10.315, "N1N9_dist": 8.764, "C6C8_dist": 9.836, "CNNC_torsion": -0.171, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.80],O4(carbonyl)-N6(amino)[3.06]", "interBase_angle": 0.924, "planarity": 0.030, "simple_Shear": 0.027, "simple_Stretch": -0.100, "simple_Buckle": -0.394, "simple_Propeller": -0.836, "bp_simpleParams": [ 0.027, -0.100, -0.117, -0.394, -0.836, 5.597 ], "bp_params": [ 0.028, -0.100, -0.117, -0.392, -0.837, 5.597 ], "frame": { "rmsd": null, "origin": [ 183.345, 190.556, 147.106 ], "x_axis": [ 0.660, 0.108, -0.743 ], "y_axis": [ 0.672, -0.526, 0.521 ], "z_axis": [ -0.335, -0.844, -0.419 ], "quaternion": [ 0.423, 0.807, 0.242, -0.334 ] } }, { "index": 292, "nt1": "///2/685", "nt2": "///2/917", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.451, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.705, "chi2": -169.376, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.212, "C1C1_dist": 10.546, "N1N9_dist": 8.792, "C6C8_dist": 9.662, "CNNC_torsion": 16.396, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.89]", "interBase_angle": 18.692, "planarity": 0.369, "simple_Shear": 0.127, "simple_Stretch": -0.256, "simple_Buckle": 13.980, "simple_Propeller": 12.407, "bp_simpleParams": [ 0.127, -0.256, -0.941, 13.980, 12.407, -4.144 ], "bp_params": [ 0.121, -0.259, -0.941, 14.272, 12.070, -4.135 ], "frame": { "rmsd": null, "origin": [ 170.124, 180.686, 140.040 ], "x_axis": [ 0.946, 0.165, -0.278 ], "y_axis": [ 0.260, 0.123, 0.958 ], "z_axis": [ 0.192, -0.979, 0.074 ], "quaternion": [ 0.732, 0.661, 0.160, -0.032 ] } }, { "index": 293, "nt1": "///2/685", "nt2": "///2/918", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.451, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.175, "chi2": -140.396, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 65.466, "C1C1_dist": 8.864, "N1N9_dist": 7.658, "C6C8_dist": 8.917, "CNNC_torsion": 3.682, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.91],N1-N3(imino)[2.69]", "interBase_angle": 22.896, "planarity": 0.547, "simple_Shear": -0.002, "simple_Stretch": -1.122, "simple_Buckle": 4.088, "simple_Propeller": 22.528, "bp_simpleParams": [ -0.002, -1.122, 1.979, 4.088, 22.528, 24.291 ], "bp_params": [ -0.015, -1.122, 1.979, 4.285, 22.492, 24.736 ], "frame": { "rmsd": null, "origin": [ 170.236, 182.182, 140.287 ], "x_axis": [ 0.858, 0.066, -0.509 ], "y_axis": [ 0.502, 0.105, 0.859 ], "z_axis": [ 0.110, -0.992, 0.057 ], "quaternion": [ 0.711, 0.651, 0.218, -0.153 ] } }, { "index": 294, "nt1": "///2/686", "nt2": "///2/917", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.546, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 99.848, "chi2": -169.376, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.650, "C1C1_dist": 7.007, "N1N9_dist": 6.368, "C6C8_dist": 7.972, "CNNC_torsion": -6.758, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N3(imino)[2.47],N3(imino)-O4(carbonyl)[3.17]", "interBase_angle": 30.221, "planarity": 0.458, "simple_Shear": 3.231, "simple_Stretch": -0.747, "simple_Buckle": 24.318, "simple_Propeller": 17.943, "bp_simpleParams": [ 3.231, -0.747, 1.612, 24.318, 17.943, 43.654 ], "bp_params": [ 2.739, -1.870, 1.612, 29.203, 7.779, 42.465 ], "frame": { "rmsd": null, "origin": [ 171.805, 179.793, 139.440 ], "x_axis": [ 0.968, 0.220, 0.124 ], "y_axis": [ -0.116, -0.049, 0.992 ], "z_axis": [ 0.224, -0.974, -0.022 ], "quaternion": [ 0.689, 0.714, 0.036, 0.122 ] } }, { "index": 295, "nt1": "///2/690", "nt2": "///2/736", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -131.710, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.236, "chi2": -154.954, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.147, "C1C1_dist": 10.506, "N1N9_dist": 8.819, "C6C8_dist": 9.777, "CNNC_torsion": 2.713, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 15.302, "planarity": 0.257, "simple_Shear": -0.195, "simple_Stretch": -0.168, "simple_Buckle": -13.282, "simple_Propeller": 7.598, "bp_simpleParams": [ -0.195, -0.168, 0.200, -13.282, 7.598, 2.119 ], "bp_params": [ -0.192, -0.172, 0.200, -13.429, 7.335, 2.109 ], "frame": { "rmsd": null, "origin": [ 170.362, 154.252, 140.828 ], "x_axis": [ 0.634, -0.061, 0.771 ], "y_axis": [ -0.744, 0.225, 0.629 ], "z_axis": [ -0.211, -0.973, 0.097 ], "quaternion": [ 0.699, 0.573, -0.351, 0.244 ] } }, { "index": 296, "nt1": "///2/691", "nt2": "///2/735", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.343, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.425, "chi2": -155.020, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.237, "C1C1_dist": 10.723, "N1N9_dist": 8.923, "C6C8_dist": 9.811, "CNNC_torsion": 18.448, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 20.074, "planarity": 0.268, "simple_Shear": -0.125, "simple_Stretch": -0.185, "simple_Buckle": -8.893, "simple_Propeller": 17.996, "bp_simpleParams": [ -0.125, -0.185, -0.507, -8.893, 17.996, -1.836 ], "bp_params": [ -0.123, -0.187, -0.507, -9.101, 17.892, -1.853 ], "frame": { "rmsd": null, "origin": [ 169.189, 150.068, 141.312 ], "x_axis": [ 0.370, 0.124, 0.921 ], "y_axis": [ -0.911, 0.240, 0.334 ], "z_axis": [ -0.179, -0.963, 0.202 ], "quaternion": [ 0.673, 0.482, -0.409, 0.385 ] } }, { "index": 297, "nt1": "///2/692", "nt2": "///2/734", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.198, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.119, "chi2": -159.271, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.402, "C1C1_dist": 10.823, "N1N9_dist": 8.942, "C6C8_dist": 9.796, "CNNC_torsion": 25.491, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.85]", "interBase_angle": 28.050, "planarity": 0.349, "simple_Shear": -0.214, "simple_Stretch": -0.221, "simple_Buckle": 4.272, "simple_Propeller": 27.723, "bp_simpleParams": [ -0.214, -0.221, -0.418, 4.272, 27.723, -3.323 ], "bp_params": [ -0.211, -0.224, -0.418, 3.841, 27.786, -3.422 ], "frame": { "rmsd": null, "origin": [ 169.809, 146.666, 142.034 ], "x_axis": [ -0.035, 0.408, 0.912 ], "y_axis": [ -0.979, 0.171, -0.114 ], "z_axis": [ -0.203, -0.897, 0.394 ], "quaternion": [ 0.618, 0.316, -0.451, 0.561 ] } }, { "index": 298, "nt1": "///2/693", "nt2": "///2/733", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.351, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.468, "chi2": -162.661, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 68.597, "C1C1_dist": 10.220, "N1N9_dist": 8.847, "C6C8_dist": 10.063, "CNNC_torsion": 9.987, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.76],N1*O2(carbonyl)[3.19]", "unusual_base2base_hbonds": 1, "interBase_angle": 17.963, "planarity": 0.335, "simple_Shear": -1.367, "simple_Stretch": 0.365, "simple_Buckle": 17.792, "simple_Propeller": 2.476, "bp_simpleParams": [ -1.367, 0.365, -0.796, 17.792, 2.476, 15.154 ], "bp_params": [ -1.402, 0.184, -0.796, 17.325, 4.747, 14.996 ], "frame": { "rmsd": null, "origin": [ 169.734, 145.303, 145.285 ], "x_axis": [ -0.342, 0.811, 0.474 ], "y_axis": [ -0.896, -0.130, -0.425 ], "z_axis": [ -0.284, -0.570, 0.771 ], "quaternion": [ 0.570, 0.064, -0.332, 0.749 ] } }, { "index": 299, "nt1": "///2/694", "nt2": "///2/732", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.262, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 74.308, "chi2": -169.130, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 70.466, "C1C1_dist": 10.108, "N1N9_dist": 9.222, "C6C8_dist": 10.901, "CNNC_torsion": 17.866, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 21.889, "planarity": 0.490, "simple_Shear": 0.058, "simple_Stretch": 1.344, "simple_Buckle": 16.474, "simple_Propeller": 14.413, "bp_simpleParams": [ 0.058, 1.344, -1.729, 16.474, 14.413, 34.226 ], "bp_params": [ 0.088, 1.342, -1.729, 16.804, 14.027, 34.124 ], "frame": { "rmsd": null, "origin": [ 168.976, 144.350, 150.132 ], "x_axis": [ -0.727, 0.639, 0.249 ], "y_axis": [ -0.624, -0.465, -0.629 ], "z_axis": [ -0.286, -0.613, 0.737 ], "quaternion": [ 0.369, -0.011, -0.363, 0.856 ] } }, { "index": 300, "nt1": "///2/695", "nt2": "///2/731", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.209, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.290, "chi2": 162.492, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 40.937, "C1C1_dist": 10.508, "N1N9_dist": 8.496, "C6C8_dist": 9.069, "CNNC_torsion": 22.344, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.13],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.57]", "interBase_angle": 18.710, "planarity": 0.366, "simple_Shear": 0.716, "simple_Stretch": -0.913, "simple_Buckle": 18.654, "simple_Propeller": 1.438, "bp_simpleParams": [ 0.716, -0.913, -1.869, 18.654, 1.438, -13.716 ], "bp_params": [ 0.651, -0.961, -1.869, 18.709, 0.139, -13.535 ], "frame": { "rmsd": null, "origin": [ 170.557, 142.315, 153.760 ], "x_axis": [ -0.960, 0.202, -0.192 ], "y_axis": [ -0.041, -0.783, -0.621 ], "z_axis": [ -0.276, -0.589, 0.760 ], "quaternion": [ 0.065, -0.125, -0.323, 0.936 ] } }, { "index": 301, "nt1": "///2/695", "nt2": "///2/732", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.209, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.251, "chi2": -169.130, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 87.769, "C1C1_dist": 6.644, "N1N9_dist": 5.991, "C6C8_dist": 7.780, "CNNC_torsion": 0.970, "hbonds_num": 1, "hbonds_desc": "N3-N3(imino)[3.25]", "interBase_angle": 22.215, "planarity": 0.467, "simple_Shear": -1.409, "simple_Stretch": -1.449, "simple_Buckle": 20.552, "simple_Propeller": 8.433, "bp_simpleParams": [ -1.409, -1.449, 1.670, 20.552, 8.433, 49.416 ], "bp_params": [ -1.180, -1.641, 1.670, 19.115, 11.318, 49.025 ], "frame": { "rmsd": null, "origin": [ 169.850, 143.705, 152.233 ], "x_axis": [ -0.803, 0.571, 0.168 ], "y_axis": [ -0.525, -0.547, -0.652 ], "z_axis": [ -0.280, -0.612, 0.740 ], "quaternion": [ 0.312, -0.032, -0.359, 0.879 ] } }, { "index": 302, "nt1": "///2/696", "nt2": "///2/730", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.128, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.791, "chi2": -153.578, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.670, "C1C1_dist": 10.138, "N1N9_dist": 8.581, "C6C8_dist": 9.516, "CNNC_torsion": -0.783, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 37.200, "planarity": 0.476, "simple_Shear": -0.201, "simple_Stretch": 0.008, "simple_Buckle": -37.042, "simple_Propeller": -3.421, "bp_simpleParams": [ -0.201, 0.008, -0.233, -37.042, -3.421, 2.314 ], "bp_params": [ -0.201, 0.005, -0.233, -37.014, -3.712, 2.195 ], "frame": { "rmsd": null, "origin": [ 164.589, 143.203, 155.312 ], "x_axis": [ -0.479, 0.132, -0.868 ], "y_axis": [ 0.131, -0.967, -0.220 ], "z_axis": [ -0.868, -0.219, 0.445 ], "quaternion": [ 0.000, -0.511, -0.129, 0.850 ] } }, { "index": 303, "nt1": "///2/743", "nt2": "///2/798", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -162.162, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.229, "chi2": -103.248, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 111.561, "C1C1_dist": 7.236, "N1N9_dist": 6.766, "C6C8_dist": 8.241, "CNNC_torsion": 20.878, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N3[3.03]", "interBase_angle": 70.238, "planarity": 0.890, "simple_Shear": -3.169, "simple_Stretch": 1.257, "simple_Buckle": -50.983, "simple_Propeller": 48.313, "bp_simpleParams": [ -3.169, 1.257, -1.208, -50.983, 48.313, 54.321 ], "bp_params": [ -3.387, -0.390, -1.208, -67.841, 18.191, 46.793 ], "frame": { "rmsd": null, "origin": [ 188.792, 156.103, 128.577 ], "x_axis": [ 0.800, -0.488, 0.350 ], "y_axis": [ -0.592, -0.736, 0.328 ], "z_axis": [ 0.097, -0.470, -0.877 ], "quaternion": [ 0.216, 0.924, -0.292, 0.121 ] } }, { "index": 304, "nt1": "///2/744", "nt2": "///2/797", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.477, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.992, "chi2": -151.833, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 50.948, "C1C1_dist": 10.689, "N1N9_dist": 8.815, "C6C8_dist": 9.581, "CNNC_torsion": 33.979, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.85]", "interBase_angle": 31.124, "planarity": 0.432, "simple_Shear": 0.144, "simple_Stretch": -0.328, "simple_Buckle": -22.750, "simple_Propeller": 21.239, "bp_simpleParams": [ 0.144, -0.328, -1.395, -22.750, 21.239, -9.220 ], "bp_params": [ 0.144, -0.328, -1.395, -22.769, 21.220, -9.202 ], "frame": { "rmsd": null, "origin": [ 187.036, 155.068, 124.148 ], "x_axis": [ 0.281, -0.922, 0.264 ], "y_axis": [ -0.952, -0.302, -0.042 ], "z_axis": [ 0.119, -0.240, -0.964 ], "quaternion": [ 0.062, 0.798, -0.587, 0.120 ] } }, { "index": 305, "nt1": "///2/745", "nt2": "///2/796", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.204, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.957, "chi2": -159.812, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.807, "C1C1_dist": 10.621, "N1N9_dist": 8.911, "C6C8_dist": 9.832, "CNNC_torsion": 28.288, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.83],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[3.06]", "interBase_angle": 36.438, "planarity": 0.424, "simple_Shear": 0.420, "simple_Stretch": -0.119, "simple_Buckle": -15.310, "simple_Propeller": 33.066, "bp_simpleParams": [ 0.420, -0.119, -0.207, -15.310, 33.066, 0.618 ], "bp_params": [ 0.418, -0.127, -0.207, -14.396, 33.474, 0.641 ], "frame": { "rmsd": null, "origin": [ 189.487, 151.610, 121.509 ], "x_axis": [ -0.096, -0.863, 0.496 ], "y_axis": [ -0.995, 0.078, -0.056 ], "z_axis": [ 0.010, -0.499, -0.867 ], "quaternion": [ -0.170, -0.651, 0.714, -0.194 ] } }, { "index": 306, "nt1": "///2/749", "nt2": "///2/794", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.604, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.922, "chi2": -174.844, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.054, "C1C1_dist": 10.329, "N1N9_dist": 8.781, "C6C8_dist": 9.860, "CNNC_torsion": -4.104, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.81],O4(carbonyl)-N6(amino)[3.08]", "interBase_angle": 3.183, "planarity": 0.067, "simple_Shear": -0.009, "simple_Stretch": -0.080, "simple_Buckle": 2.565, "simple_Propeller": -1.885, "bp_simpleParams": [ -0.009, -0.080, 0.179, 2.565, -1.885, 5.762 ], "bp_params": [ -0.008, -0.080, 0.179, 2.577, -1.869, 5.761 ], "frame": { "rmsd": null, "origin": [ 189.991, 147.653, 121.180 ], "x_axis": [ -0.920, 0.265, 0.289 ], "y_axis": [ -0.179, 0.371, -0.911 ], "z_axis": [ -0.348, -0.890, -0.294 ], "quaternion": [ -0.198, 0.027, 0.804, -0.560 ] } }, { "index": 307, "nt1": "///2/750", "nt2": "///2/793", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.506, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.235, "chi2": -171.800, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.674, "C1C1_dist": 10.658, "N1N9_dist": 8.878, "C6C8_dist": 9.790, "CNNC_torsion": 8.513, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 1.058, "planarity": 0.191, "simple_Shear": 0.155, "simple_Stretch": -0.271, "simple_Buckle": 1.023, "simple_Propeller": 0.269, "bp_simpleParams": [ 0.155, -0.271, -0.880, 1.023, 0.269, -0.511 ], "bp_params": [ 0.152, -0.273, -0.880, 1.026, 0.258, -0.511 ], "frame": { "rmsd": null, "origin": [ 190.014, 143.523, 122.021 ], "x_axis": [ -0.894, 0.383, -0.233 ], "y_axis": [ 0.311, 0.156, -0.937 ], "z_axis": [ -0.323, -0.910, -0.258 ], "quaternion": [ -0.030, 0.229, 0.760, -0.608 ] } }, { "index": 308, "nt1": "///2/751", "nt2": "///2/792", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.665, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.730, "chi2": -160.881, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.440, "C1C1_dist": 9.952, "N1N9_dist": 8.012, "C6C8_dist": 8.222, "CNNC_torsion": 41.066, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 37.196, "planarity": 0.772, "simple_Shear": 1.722, "simple_Stretch": -1.709, "simple_Buckle": -29.825, "simple_Propeller": -22.227, "bp_simpleParams": [ 1.722, -1.709, -3.522, -29.825, -22.227, -22.663 ], "bp_params": [ 1.335, -2.026, -3.522, -33.833, -15.457, -21.917 ], "frame": { "rmsd": null, "origin": [ 186.725, 138.269, 122.761 ], "x_axis": [ -0.434, 0.518, -0.737 ], "y_axis": [ 0.631, -0.409, -0.659 ], "z_axis": [ -0.643, -0.751, -0.149 ], "quaternion": [ -0.043, -0.530, -0.542, 0.651 ] } }, { "index": 309, "nt1": "///2/752", "nt2": "///2/791", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -141.699, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 47.175, "chi2": -164.902, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.178, "C1C1_dist": 11.749, "N1N9_dist": 9.608, "C6C8_dist": 9.656, "CNNC_torsion": 14.764, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.73]", "interBase_angle": 54.685, "planarity": 0.764, "simple_Shear": 0.996, "simple_Stretch": 1.252, "simple_Buckle": -54.586, "simple_Propeller": 3.288, "bp_simpleParams": [ 0.996, 1.252, -0.009, -54.586, 3.288, -41.576 ], "bp_params": [ 1.116, 1.146, -0.009, -54.025, 8.471, -37.486 ], "frame": { "rmsd": null, "origin": [ 183.771, 134.428, 123.994 ], "x_axis": [ 0.104, 0.151, -0.983 ], "y_axis": [ 0.870, -0.492, 0.017 ], "z_axis": [ -0.481, -0.857, -0.182 ], "quaternion": [ 0.328, 0.667, 0.383, -0.549 ] } }, { "index": 310, "nt1": "///2/754", "nt2": "///2/790", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -147.381, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.633, "chi2": -164.576, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.574, "C1C1_dist": 10.820, "N1N9_dist": 8.933, "C6C8_dist": 9.739, "CNNC_torsion": 25.232, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.85]", "interBase_angle": 22.659, "planarity": 0.325, "simple_Shear": 0.004, "simple_Stretch": -0.263, "simple_Buckle": -12.992, "simple_Propeller": 18.565, "bp_simpleParams": [ 0.004, -0.263, -1.038, -12.992, 18.565, -6.318 ], "bp_params": [ 0.005, -0.263, -1.038, -13.035, 18.535, -6.361 ], "frame": { "rmsd": null, "origin": [ 180.676, 133.444, 120.744 ], "x_axis": [ 0.425, -0.078, -0.902 ], "y_axis": [ 0.616, -0.706, 0.350 ], "z_axis": [ -0.664, -0.704, -0.252 ], "quaternion": [ 0.342, 0.772, 0.174, -0.507 ] } }, { "index": 311, "nt1": "///2/755", "nt2": "///2/789", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.686, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.418, "chi2": 179.996, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.415, "C1C1_dist": 10.861, "N1N9_dist": 8.931, "C6C8_dist": 9.764, "CNNC_torsion": 29.688, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 30.098, "planarity": 0.386, "simple_Shear": 0.190, "simple_Stretch": -0.268, "simple_Buckle": -1.827, "simple_Propeller": 30.043, "bp_simpleParams": [ 0.190, -0.268, -0.629, -1.827, 30.043, -4.859 ], "bp_params": [ 0.186, -0.270, -0.629, -1.401, 30.065, -5.031 ], "frame": { "rmsd": null, "origin": [ 178.674, 131.698, 117.100 ], "x_axis": [ 0.745, -0.166, -0.646 ], "y_axis": [ 0.429, -0.622, 0.655 ], "z_axis": [ -0.511, -0.765, -0.393 ], "quaternion": [ 0.427, 0.831, 0.079, -0.348 ] } }, { "index": 312, "nt1": "///2/756", "nt2": "///2/788", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -151.349, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.542, "chi2": -168.562, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.249, "C1C1_dist": 10.531, "N1N9_dist": 8.873, "C6C8_dist": 9.854, "CNNC_torsion": 4.033, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 3.717, "planarity": 0.187, "simple_Shear": 0.192, "simple_Stretch": -0.195, "simple_Buckle": -2.834, "simple_Propeller": -2.405, "bp_simpleParams": [ 0.192, -0.195, -0.682, -2.834, -2.405, 2.235 ], "bp_params": [ 0.189, -0.198, -0.682, -2.869, -2.363, 2.235 ], "frame": { "rmsd": null, "origin": [ 179.654, 129.671, 113.853 ], "x_axis": [ 0.967, -0.092, 0.239 ], "y_axis": [ -0.233, -0.701, 0.674 ], "z_axis": [ 0.106, -0.707, -0.699 ], "quaternion": [ 0.376, 0.917, -0.088, 0.094 ] } }, { "index": 313, "nt1": "///2/794", "nt2": "///2/796", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -174.844, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 69.339, "chi2": -159.812, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 32.404, "C1C1_dist": 9.806, "N1N9_dist": 8.064, "C6C8_dist": 7.476, "CNNC_torsion": -22.465, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O6(carbonyl)[2.92]", "interBase_angle": 63.606, "planarity": 0.805, "simple_Shear": -2.046, "simple_Stretch": 2.254, "simple_Buckle": 63.287, "simple_Propeller": -6.367, "bp_simpleParams": [ -2.046, 2.254, -2.652, 63.287, -6.367, -71.603 ], "bp_params": [ 1.463, 2.669, -2.652, 15.271, -61.746, -79.618 ], "frame": { "rmsd": null, "origin": [ 189.728, 149.746, 121.242 ], "x_axis": [ -0.691, -0.483, 0.537 ], "y_axis": [ 0.712, -0.581, 0.394 ], "z_axis": [ 0.122, 0.655, 0.746 ], "quaternion": [ -0.344, 0.190, 0.302, 0.869 ] } }, { "index": 314, "nt1": "///2/799", "nt2": "///2/866", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -134.543, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 33.327, "chi2": -159.955, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 83.494, "C1C1_dist": 9.686, "N1N9_dist": 8.307, "C6C8_dist": 9.356, "CNNC_torsion": -3.449, "hbonds_num": 2, "hbonds_desc": "O4(carbonyl)*O2(carbonyl)[3.12],O4(carbonyl)-N3(imino)[3.53]", "unusual_base2base_hbonds": 1, "interBase_angle": 19.743, "planarity": 0.310, "simple_Shear": -4.488, "simple_Stretch": 0.283, "simple_Buckle": -2.510, "simple_Propeller": -19.583, "bp_simpleParams": [ -4.488, 0.283, -1.084, -2.510, -19.583, 8.605 ], "bp_params": [ -4.134, -1.770, -1.084, 6.608, -18.605, 8.705 ], "frame": { "rmsd": null, "origin": [ 184.337, 173.335, 135.591 ], "x_axis": [ -0.758, -0.027, 0.651 ], "y_axis": [ -0.102, -0.982, -0.159 ], "z_axis": [ 0.644, -0.187, 0.742 ], "quaternion": [ 0.020, 0.347, -0.093, 0.933 ] } }, { "index": 315, "nt1": "///2/800", "nt2": "///2/865", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.995, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.853, "chi2": -163.380, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.276, "C1C1_dist": 11.336, "N1N9_dist": 9.506, "C6C8_dist": 10.242, "CNNC_torsion": -0.639, "hbonds_num": 2, "hbonds_desc": "O4(carbonyl)-N6(amino)[3.33],O4(carbonyl)*N1[2.99]", "unusual_base2base_hbonds": 1, "interBase_angle": 18.826, "planarity": 0.327, "simple_Shear": -1.761, "simple_Stretch": 0.375, "simple_Buckle": 0.646, "simple_Propeller": -18.815, "bp_simpleParams": [ -1.761, 0.375, -1.491, 0.646, -18.815, -5.268 ], "bp_params": [ -1.800, 0.044, -1.491, 4.092, -18.376, -5.333 ], "frame": { "rmsd": null, "origin": [ 186.675, 173.464, 138.831 ], "x_axis": [ -0.695, -0.595, 0.403 ], "y_axis": [ 0.399, -0.786, -0.473 ], "z_axis": [ 0.598, -0.168, 0.784 ], "quaternion": [ -0.275, 0.277, -0.177, 0.903 ] } }, { "index": 316, "nt1": "///2/801", "nt2": "///2/864", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.541, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.088, "chi2": -159.389, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.123, "C1C1_dist": 10.389, "N1N9_dist": 8.785, "C6C8_dist": 9.819, "CNNC_torsion": 11.075, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.81],O4(carbonyl)-N6(amino)[3.04]", "interBase_angle": 20.168, "planarity": 0.234, "simple_Shear": 0.014, "simple_Stretch": -0.107, "simple_Buckle": -7.610, "simple_Propeller": 18.678, "bp_simpleParams": [ 0.014, -0.107, 0.344, -7.610, 18.678, 5.135 ], "bp_params": [ 0.015, -0.107, 0.344, -7.726, 18.630, 5.192 ], "frame": { "rmsd": null, "origin": [ 186.783, 172.083, 143.388 ], "x_axis": [ -0.581, -0.792, -0.186 ], "y_axis": [ 0.675, -0.342, -0.654 ], "z_axis": [ 0.454, -0.506, 0.733 ], "quaternion": [ -0.450, 0.082, -0.356, 0.815 ] } }, { "index": 317, "nt1": "///2/802", "nt2": "///2/863", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.467, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.788, "chi2": -160.922, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.192, "C1C1_dist": 10.557, "N1N9_dist": 8.841, "C6C8_dist": 9.762, "CNNC_torsion": -11.149, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.00],N1-N3(imino)[2.87]", "interBase_angle": 21.786, "planarity": 0.282, "simple_Shear": -0.004, "simple_Stretch": -0.051, "simple_Buckle": -18.672, "simple_Propeller": -11.223, "bp_simpleParams": [ -0.004, -0.051, 0.078, -18.672, -11.223, -0.229 ], "bp_params": [ -0.005, -0.051, 0.078, -18.841, -10.938, -0.227 ], "frame": { "rmsd": null, "origin": [ 186.505, 169.838, 146.170 ], "x_axis": [ -0.223, -0.485, -0.846 ], "y_axis": [ 0.960, 0.042, -0.278 ], "z_axis": [ 0.170, -0.874, 0.456 ], "quaternion": [ 0.564, 0.264, 0.450, -0.640 ] } }, { "index": 318, "nt1": "///2/803", "nt2": "///2/861", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.108, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.445, "chi2": -117.045, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 72.589, "C1C1_dist": 10.352, "N1N9_dist": 8.988, "C6C8_dist": 10.288, "CNNC_torsion": 25.776, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N1[3.33]", "interBase_angle": 38.397, "planarity": 0.485, "simple_Shear": -1.440, "simple_Stretch": 0.748, "simple_Buckle": -15.211, "simple_Propeller": 35.255, "bp_simpleParams": [ -1.440, 0.748, -0.532, -15.211, 35.255, 19.553 ], "bp_params": [ -1.552, 0.472, -0.532, -21.080, 32.093, 20.018 ], "frame": { "rmsd": null, "origin": [ 188.299, 164.414, 144.582 ], "x_axis": [ 0.601, -0.363, -0.712 ], "y_axis": [ 0.776, 0.478, 0.411 ], "z_axis": [ 0.191, -0.800, 0.569 ], "quaternion": [ 0.814, 0.372, 0.278, -0.350 ] } }, { "index": 319, "nt1": "///2/803", "nt2": "///2/862", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.108, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 89.139, "chi2": -169.163, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.163, "C1C1_dist": 10.804, "N1N9_dist": 9.495, "C6C8_dist": 10.282, "CNNC_torsion": 6.960, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.88]", "interBase_angle": 26.927, "planarity": 0.295, "simple_Shear": 5.489, "simple_Stretch": 2.182, "simple_Buckle": -26.891, "simple_Propeller": -1.394, "bp_simpleParams": [ 5.489, 2.182, 1.111, -26.891, -1.394, 8.559 ], "bp_params": [ 5.786, -1.189, 1.111, -23.231, 13.616, 8.446 ], "frame": { "rmsd": null, "origin": [ 186.459, 166.289, 147.351 ], "x_axis": [ 0.620, -0.176, -0.765 ], "y_axis": [ 0.736, 0.468, 0.489 ], "z_axis": [ 0.272, -0.866, 0.419 ], "quaternion": [ 0.792, 0.428, 0.328, -0.288 ] } }, { "index": 320, "nt1": "///2/804", "nt2": "///2/860", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.384, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.863, "chi2": -146.542, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.526, "C1C1_dist": 9.158, "N1N9_dist": 8.203, "C6C8_dist": 9.685, "CNNC_torsion": 16.771, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.30],O2(carbonyl)-N2(amino)[3.14],N3(imino)-O6(carbonyl)[3.36]", "interBase_angle": 29.818, "planarity": 0.478, "simple_Shear": 2.715, "simple_Stretch": 0.579, "simple_Buckle": 5.626, "simple_Propeller": 29.283, "bp_simpleParams": [ 2.715, 0.579, 0.236, 5.626, 29.283, 34.885 ], "bp_params": [ 2.766, -0.243, 0.236, 13.859, 26.402, 35.538 ], "frame": { "rmsd": null, "origin": [ 190.232, 162.399, 146.148 ], "x_axis": [ 0.902, 0.109, -0.417 ], "y_axis": [ 0.259, 0.636, 0.727 ], "z_axis": [ 0.345, -0.764, 0.546 ], "quaternion": [ 0.878, 0.424, 0.217, -0.043 ] } }, { "index": 321, "nt1": "///2/805", "nt2": "///2/858", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.214, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.506, "chi2": -147.116, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.359, "C1C1_dist": 10.345, "N1N9_dist": 8.755, "C6C8_dist": 9.791, "CNNC_torsion": -5.893, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 13.961, "planarity": 0.225, "simple_Shear": -0.026, "simple_Stretch": -0.148, "simple_Buckle": -6.781, "simple_Propeller": -12.203, "bp_simpleParams": [ -0.026, -0.148, -0.514, -6.781, -12.203, 5.001 ], "bp_params": [ -0.025, -0.149, -0.514, -6.709, -12.243, 5.021 ], "frame": { "rmsd": null, "origin": [ 194.134, 159.049, 146.280 ], "x_axis": [ 0.238, 0.959, -0.151 ], "y_axis": [ -0.247, 0.210, 0.946 ], "z_axis": [ 0.939, -0.188, 0.286 ], "quaternion": [ 0.658, 0.431, 0.414, 0.458 ] } }, { "index": 322, "nt1": "///2/807", "nt2": "///2/856", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.706, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.715, "chi2": -166.067, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.940, "C1C1_dist": 10.557, "N1N9_dist": 8.896, "C6C8_dist": 9.873, "CNNC_torsion": 3.183, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 4.458, "planarity": 0.153, "simple_Shear": -0.206, "simple_Stretch": -0.180, "simple_Buckle": -3.531, "simple_Propeller": -2.721, "bp_simpleParams": [ -0.206, -0.180, -0.759, -3.531, -2.721, 2.286 ], "bp_params": [ -0.203, -0.183, -0.759, -3.488, -2.776, 2.285 ], "frame": { "rmsd": null, "origin": [ 201.609, 158.717, 146.078 ], "x_axis": [ -0.398, 0.667, 0.630 ], "y_axis": [ -0.325, -0.744, 0.584 ], "z_axis": [ 0.858, 0.028, 0.513 ], "quaternion": [ 0.304, 0.456, 0.188, 0.815 ] } }, { "index": 323, "nt1": "///2/808", "nt2": "///2/855", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.857, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.449, "chi2": 178.305, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.272, "C1C1_dist": 12.303, "N1N9_dist": 10.501, "C6C8_dist": 11.167, "CNNC_torsion": 8.335, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O6(carbonyl)[3.14],N1-N1(imino)[2.77]", "interBase_angle": 3.305, "planarity": 0.260, "simple_Shear": 0.218, "simple_Stretch": 1.273, "simple_Buckle": -3.035, "simple_Propeller": 1.308, "bp_simpleParams": [ 0.218, 1.273, -1.141, -3.035, 1.308, -6.438 ], "bp_params": [ 0.245, 1.268, -1.141, -3.007, 1.372, -6.436 ], "frame": { "rmsd": null, "origin": [ 205.065, 160.348, 147.002 ], "x_axis": [ -0.534, 0.169, 0.829 ], "y_axis": [ -0.021, -0.982, 0.186 ], "z_axis": [ 0.845, 0.082, 0.528 ], "quaternion": [ 0.055, 0.480, 0.077, 0.872 ] } }, { "index": 324, "nt1": "///2/815", "nt2": "///2/849", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.158, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.670, "chi2": -163.934, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.752, "C1C1_dist": 10.591, "N1N9_dist": 8.862, "C6C8_dist": 9.814, "CNNC_torsion": -7.497, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 5.228, "planarity": 0.186, "simple_Shear": -0.078, "simple_Stretch": -0.147, "simple_Buckle": 5.190, "simple_Propeller": -0.628, "bp_simpleParams": [ -0.078, -0.147, 0.662, 5.190, -0.628, 0.719 ], "bp_params": [ -0.076, -0.147, 0.662, 5.198, -0.561, 0.718 ], "frame": { "rmsd": null, "origin": [ 209.968, 155.604, 165.955 ], "x_axis": [ 0.793, -0.469, -0.390 ], "y_axis": [ 0.608, 0.650, 0.456 ], "z_axis": [ 0.040, -0.598, 0.800 ], "quaternion": [ 0.900, 0.293, 0.119, -0.299 ] } }, { "index": 325, "nt1": "///2/816", "nt2": "///2/848", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.659, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.425, "chi2": -168.332, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.765, "C1C1_dist": 10.726, "N1N9_dist": 8.910, "C6C8_dist": 9.813, "CNNC_torsion": -12.383, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.90]", "interBase_angle": 22.515, "planarity": 0.281, "simple_Shear": 0.030, "simple_Stretch": -0.145, "simple_Buckle": -5.011, "simple_Propeller": -21.950, "bp_simpleParams": [ 0.030, -0.145, -0.698, -5.011, -21.950, 1.130 ], "bp_params": [ 0.028, -0.145, -0.698, -5.234, -21.898, 1.149 ], "frame": { "rmsd": null, "origin": [ 209.800, 152.553, 167.262 ], "x_axis": [ 0.929, 0.287, -0.234 ], "y_axis": [ 0.004, 0.623, 0.782 ], "z_axis": [ 0.370, -0.727, 0.578 ], "quaternion": [ 0.885, 0.427, 0.171, 0.080 ] } }, { "index": 326, "nt1": "///2/817", "nt2": "///2/847", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -158.516, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.840, "chi2": -147.010, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 6.563, "C1C1_dist": 10.102, "N1N9_dist": 8.859, "C6C8_dist": 9.300, "CNNC_torsion": -139.555, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.32],N2(amino)-N7[3.17],N3-N6(amino)[3.23]", "interBase_angle": 26.444, "planarity": 0.324, "simple_Shear": 7.361, "simple_Stretch": 2.878, "simple_Buckle": 7.799, "simple_Propeller": -25.268, "bp_simpleParams": [ 7.361, 2.878, -0.035, 7.799, -25.268, -3.288 ], "bp_params": [ 6.962, -3.741, -0.035, -14.283, -22.255, -3.326 ], "frame": { "rmsd": null, "origin": [ 210.357, 148.599, 169.462 ], "x_axis": [ 0.491, 0.679, 0.546 ], "y_axis": [ -0.825, 0.161, 0.541 ], "z_axis": [ 0.279, -0.716, 0.639 ], "quaternion": [ 0.757, 0.415, -0.088, 0.497 ] } }, { "index": 327, "nt1": "///2/819", "nt2": "///2/829", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.811, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.155, "chi2": -142.317, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 56.237, "C1C1_dist": 10.540, "N1N9_dist": 8.860, "C6C8_dist": 9.818, "CNNC_torsion": -6.840, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 9.389, "planarity": 0.222, "simple_Shear": -0.213, "simple_Stretch": -0.191, "simple_Buckle": -9.349, "simple_Propeller": -0.869, "bp_simpleParams": [ -0.213, -0.191, 0.534, -9.349, -0.869, 1.096 ], "bp_params": [ -0.210, -0.194, 0.534, -9.334, -1.020, 1.093 ], "frame": { "rmsd": null, "origin": [ 215.921, 144.682, 173.107 ], "x_axis": [ -0.267, 0.935, 0.235 ], "y_axis": [ -0.954, -0.291, 0.073 ], "z_axis": [ 0.137, -0.205, 0.969 ], "quaternion": [ 0.594, 0.117, -0.041, 0.795 ] } }, { "index": 328, "nt1": "///2/820", "nt2": "///2/828", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.691, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.741, "chi2": -171.631, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.114, "C1C1_dist": 10.620, "N1N9_dist": 9.036, "C6C8_dist": 10.034, "CNNC_torsion": -3.980, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.23],N3(imino)-O6(carbonyl)[3.41]", "interBase_angle": 11.974, "planarity": 0.233, "simple_Shear": 1.736, "simple_Stretch": 0.137, "simple_Buckle": -9.789, "simple_Propeller": 6.895, "bp_simpleParams": [ 1.736, 0.137, 1.195, -9.789, 6.895, 4.911 ], "bp_params": [ 1.735, -0.154, 1.195, -8.511, 8.422, 4.911 ], "frame": { "rmsd": null, "origin": [ 217.189, 144.911, 176.908 ], "x_axis": [ -0.801, 0.575, 0.165 ], "y_axis": [ -0.594, -0.797, -0.107 ], "z_axis": [ 0.069, -0.184, 0.981 ], "quaternion": [ 0.309, 0.062, -0.077, 0.946 ] } }, { "index": 329, "nt1": "///2/822", "nt2": "///2/826", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -168.470, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.930, "chi2": -157.824, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 14.488, "C1C1_dist": 10.697, "N1N9_dist": 8.008, "C6C8_dist": 6.950, "CNNC_torsion": 147.761, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.17],O4(carbonyl)*N7[3.22]", "unusual_base2base_hbonds": 1, "interBase_angle": 19.707, "planarity": 0.273, "simple_Shear": 3.437, "simple_Stretch": 1.269, "simple_Buckle": -4.497, "simple_Propeller": -19.187, "bp_simpleParams": [ 3.437, 1.269, -0.567, -4.497, -19.187, -95.577 ], "bp_params": [ 3.582, -0.766, -0.567, -14.034, -13.835, -95.564 ], "frame": { "rmsd": null, "origin": [ 223.431, 150.629, 183.291 ], "x_axis": [ -0.798, -0.602, 0.023 ], "y_axis": [ 0.592, -0.791, -0.154 ], "z_axis": [ 0.110, -0.110, 0.988 ], "quaternion": [ -0.315, 0.035, -0.070, 0.946 ] } }, { "index": 330, "nt1": "///2/830", "nt2": "///2/844", "bp": "A+U", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": 24.781, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 25.177, "chi2": -166.307, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.350, "C1C1_dist": 11.067, "N1N9_dist": 8.809, "C6C8_dist": 9.663, "CNNC_torsion": 179.438, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.90],N1-N3(imino)[2.87]", "interBase_angle": 8.003, "planarity": 0.247, "simple_Shear": 1.170, "simple_Stretch": -0.190, "simple_Buckle": 7.937, "simple_Propeller": -1.031, "bp_simpleParams": [ 1.170, -0.190, 1.311, 7.937, -1.031, 164.697 ], "bp_params": [ 0.325, 1.140, 1.311, 1.946, 7.763, 164.729 ], "frame": { "rmsd": null, "origin": [ 220.100, 135.827, 170.398 ], "x_axis": [ -0.210, -0.640, -0.739 ], "y_axis": [ -0.926, -0.112, 0.360 ], "z_axis": [ -0.314, 0.760, -0.570 ], "quaternion": [ 0.165, -0.607, 0.646, 0.434 ] } }, { "index": 331, "nt1": "///2/831", "nt2": "///2/843", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.987, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.193, "chi2": -147.422, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.889, "C1C1_dist": 10.666, "N1N9_dist": 8.867, "C6C8_dist": 9.770, "CNNC_torsion": 4.962, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 3.995, "planarity": 0.243, "simple_Shear": -0.177, "simple_Stretch": -0.301, "simple_Buckle": 0.401, "simple_Propeller": -3.975, "bp_simpleParams": [ -0.177, -0.301, -1.016, 0.401, -3.975, 0.288 ], "bp_params": [ -0.174, -0.303, -1.016, 0.451, -3.969, 0.288 ], "frame": { "rmsd": null, "origin": [ 221.307, 131.112, 170.473 ], "x_axis": [ 0.861, -0.027, -0.508 ], "y_axis": [ 0.404, 0.643, 0.650 ], "z_axis": [ 0.309, -0.765, 0.565 ], "quaternion": [ 0.876, 0.404, 0.233, -0.123 ] } }, { "index": 332, "nt1": "///2/832", "nt2": "///2/842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -135.595, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.563, "chi2": -159.452, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.409, "C1C1_dist": 10.441, "N1N9_dist": 8.766, "C6C8_dist": 9.766, "CNNC_torsion": -2.552, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 12.948, "planarity": 0.317, "simple_Shear": -0.226, "simple_Stretch": -0.256, "simple_Buckle": 8.416, "simple_Propeller": -9.839, "bp_simpleParams": [ -0.226, -0.256, -0.799, 8.416, -9.839, 4.571 ], "bp_params": [ -0.221, -0.260, -0.799, 8.614, -9.667, 4.575 ], "frame": { "rmsd": null, "origin": [ 222.472, 127.205, 172.045 ], "x_axis": [ 0.948, 0.314, -0.046 ], "y_axis": [ -0.134, 0.528, 0.838 ], "z_axis": [ 0.287, -0.789, 0.543 ], "quaternion": [ 0.869, 0.468, 0.096, 0.129 ] } }, { "index": 333, "nt1": "///2/833", "nt2": "///2/841", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.573, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 35.167, "chi2": -177.951, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.396, "C1C1_dist": 12.098, "N1N9_dist": 9.891, "C6C8_dist": 10.163, "CNNC_torsion": 2.163, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O6(carbonyl)[2.69]", "interBase_angle": 30.701, "planarity": 0.404, "simple_Shear": -1.241, "simple_Stretch": 0.429, "simple_Buckle": 12.374, "simple_Propeller": -28.097, "bp_simpleParams": [ -1.241, 0.429, -1.841, 12.374, -28.097, -23.071 ], "bp_params": [ -1.291, 0.243, -1.841, 16.189, -26.086, -23.447 ], "frame": { "rmsd": null, "origin": [ 222.970, 123.855, 172.682 ], "x_axis": [ 0.784, 0.463, 0.413 ], "y_axis": [ -0.559, 0.238, 0.794 ], "z_axis": [ 0.270, -0.854, 0.445 ], "quaternion": [ 0.785, 0.525, -0.046, 0.325 ] } }, { "index": 334, "nt1": "///2/861", "nt2": "///2/862", "bp": "A+A", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -117.045, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 142.703, "chi2": -169.163, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.969, "C1C1_dist": 7.042, "N1N9_dist": 7.107, "C6C8_dist": 7.063, "CNNC_torsion": 25.606, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.99]", "interBase_angle": 20.446, "planarity": 0.230, "simple_Shear": 0.037, "simple_Stretch": 7.634, "simple_Buckle": -20.446, "simple_Propeller": -0.051, "bp_simpleParams": [ 0.037, 7.634, -0.026, -20.446, -0.051, 6.725 ], "bp_params": [ 7.621, 0.432, -0.026, -1.308, 20.404, 6.832 ], "frame": { "rmsd": null, "origin": [ 186.793, 165.681, 146.853 ], "x_axis": [ 0.531, -0.474, -0.702 ], "y_axis": [ -0.846, -0.257, -0.467 ], "z_axis": [ 0.041, 0.842, -0.538 ], "quaternion": [ -0.429, 0.762, -0.433, -0.217 ] } }, { "index": 335, "nt1": "///2/869", "nt2": "///2/872", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -69.380, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 140.392, "chi2": 65.477, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 47.917, "C1C1_dist": 6.225, "N1N9_dist": 6.373, "C6C8_dist": 6.428, "CNNC_torsion": 4.789, "hbonds_num": 2, "hbonds_desc": "N3*N7[3.36],N3-N6(amino)[3.77]", "interBase_angle": 33.615, "planarity": 0.409, "simple_Shear": 0.137, "simple_Stretch": 6.953, "simple_Buckle": 23.045, "simple_Propeller": 24.472, "bp_simpleParams": [ 0.137, 6.953, -1.220, 23.045, 24.472, 7.757 ], "bp_params": [ 6.859, 1.145, -1.220, 28.311, -18.123, 7.623 ], "frame": { "rmsd": null, "origin": [ 170.953, 175.483, 120.116 ], "x_axis": [ 0.138, -0.576, 0.806 ], "y_axis": [ 0.851, 0.485, 0.201 ], "z_axis": [ -0.506, 0.658, 0.557 ], "quaternion": [ 0.738, -0.155, -0.445, -0.483 ] } }, { "index": 336, "nt1": "///2/872", "nt2": "///2/914", "bp": "A+U", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": 65.477, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 23.091, "chi2": -158.362, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.154, "C1C1_dist": 10.456, "N1N9_dist": 8.283, "C6C8_dist": 9.200, "CNNC_torsion": 161.127, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.37],N1-N3(imino)[2.52]", "interBase_angle": 9.585, "planarity": 0.295, "simple_Shear": 1.451, "simple_Stretch": -0.467, "simple_Buckle": 1.644, "simple_Propeller": -9.442, "bp_simpleParams": [ 1.451, -0.467, 1.077, 1.644, -9.442, 154.706 ], "bp_params": [ 0.675, 1.367, 1.077, 9.581, 0.242, 154.620 ], "frame": { "rmsd": null, "origin": [ 169.864, 177.859, 116.704 ], "x_axis": [ -0.905, -0.421, 0.067 ], "y_axis": [ 0.362, -0.676, 0.642 ], "z_axis": [ -0.225, 0.605, 0.764 ], "quaternion": [ -0.214, -0.043, 0.341, 0.914 ] } }, { "index": 337, "nt1": "///2/874", "nt2": "///2/912", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.669, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.929, "chi2": -110.231, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 50.339, "C1C1_dist": 10.906, "N1N9_dist": 8.999, "C6C8_dist": 9.857, "CNNC_torsion": -1.772, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 1.334, "planarity": 0.023, "simple_Shear": -0.171, "simple_Stretch": -0.155, "simple_Buckle": 1.204, "simple_Propeller": -0.573, "bp_simpleParams": [ -0.171, -0.155, 0.115, 1.204, -0.573, -2.246 ], "bp_params": [ -0.169, -0.157, 0.115, 1.211, -0.559, -2.246 ], "frame": { "rmsd": null, "origin": [ 170.828, 172.784, 116.204 ], "x_axis": [ -0.351, 0.334, -0.875 ], "y_axis": [ 0.765, 0.641, -0.063 ], "z_axis": [ 0.540, -0.691, -0.481 ], "quaternion": [ 0.450, 0.349, 0.786, -0.240 ] } }, { "index": 338, "nt1": "///2/875", "nt2": "///2/911", "bp": "A-C", "name": "--", "Saenger": "--", "LW": ".HW", "DSSR": ".M-W", "intra_chain": true, "chi1": 165.641, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 20.299, "chi2": -152.863, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.643, "C1C1_dist": 10.955, "N1N9_dist": 8.762, "C6C8_dist": 8.847, "CNNC_torsion": 8.824, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.14],N6(amino)-N3[2.66]", "interBase_angle": 30.692, "planarity": 0.459, "simple_Shear": -3.489, "simple_Stretch": -0.322, "simple_Buckle": -18.196, "simple_Propeller": -24.717, "bp_simpleParams": [ -3.489, -0.322, -2.287, -18.196, -24.717, -26.030 ], "bp_params": [ -3.153, -1.528, -2.287, -8.245, -29.564, -26.827 ], "frame": { "rmsd": null, "origin": [ 171.175, 168.923, 113.948 ], "x_axis": [ -0.420, 0.789, -0.449 ], "y_axis": [ 0.831, 0.533, 0.159 ], "z_axis": [ 0.365, -0.306, -0.879 ], "quaternion": [ 0.242, 0.481, 0.841, -0.044 ] } }, { "index": 339, "nt1": "///2/876", "nt2": "///2/910", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -146.817, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.824, "chi2": -164.907, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.539, "C1C1_dist": 10.356, "N1N9_dist": 8.688, "C6C8_dist": 9.682, "CNNC_torsion": -0.540, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 16.043, "planarity": 0.406, "simple_Shear": 0.216, "simple_Stretch": -0.324, "simple_Buckle": -12.618, "simple_Propeller": -9.908, "bp_simpleParams": [ 0.216, -0.324, -1.011, -12.618, -9.908, 5.092 ], "bp_params": [ 0.209, -0.328, -1.011, -12.831, -9.631, 5.078 ], "frame": { "rmsd": null, "origin": [ 172.106, 168.815, 109.771 ], "x_axis": [ 0.434, 0.893, -0.118 ], "y_axis": [ 0.784, -0.311, 0.537 ], "z_axis": [ 0.443, -0.325, -0.836 ], "quaternion": [ 0.268, 0.803, 0.522, 0.101 ] } }, { "index": 340, "nt1": "///2/877", "nt2": "///2/909", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.075, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 34.945, "chi2": -165.123, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.604, "C1C1_dist": 12.799, "N1N9_dist": 10.759, "C6C8_dist": 11.262, "CNNC_torsion": -16.499, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 19.197, "planarity": 0.279, "simple_Shear": -2.141, "simple_Stretch": 1.689, "simple_Buckle": -17.615, "simple_Propeller": -7.630, "bp_simpleParams": [ -2.141, 1.689, 0.076, -17.615, -7.630, -17.961 ], "bp_params": [ -2.453, 1.190, 0.076, -15.593, -11.198, -17.883 ], "frame": { "rmsd": null, "origin": [ 172.302, 166.912, 106.247 ], "x_axis": [ 0.704, 0.707, 0.069 ], "y_axis": [ 0.548, -0.602, 0.581 ], "z_axis": [ 0.452, -0.372, -0.811 ], "quaternion": [ 0.270, 0.883, 0.355, 0.147 ] } }, { "index": 341, "nt1": "///2/878", "nt2": "///2/908", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.131, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.773, "chi2": -166.847, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.707, "C1C1_dist": 13.100, "N1N9_dist": 11.141, "C6C8_dist": 11.648, "CNNC_torsion": 3.480, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N6(amino)[3.48],N1(imino)-N1[3.32],N2(amino)-N1[3.23]", "interBase_angle": 3.266, "planarity": 0.136, "simple_Shear": 0.830, "simple_Stretch": 1.878, "simple_Buckle": -2.705, "simple_Propeller": -1.831, "bp_simpleParams": [ 0.830, 1.878, -0.615, -2.705, -1.831, -12.675 ], "bp_params": [ 0.988, 1.800, -0.615, -2.852, -1.593, -12.673 ], "frame": { "rmsd": null, "origin": [ 174.822, 167.594, 103.478 ], "x_axis": [ 0.872, 0.272, 0.407 ], "y_axis": [ 0.117, -0.924, 0.365 ], "z_axis": [ 0.475, -0.271, -0.838 ], "quaternion": [ 0.167, 0.953, 0.102, 0.231 ] } }, { "index": 342, "nt1": "///2/879", "nt2": "///2/907", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.780, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.787, "chi2": -157.962, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.535, "C1C1_dist": 10.743, "N1N9_dist": 8.930, "C6C8_dist": 9.829, "CNNC_torsion": 4.588, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 1.786, "planarity": 0.115, "simple_Shear": 0.179, "simple_Stretch": -0.203, "simple_Buckle": 1.540, "simple_Propeller": -0.904, "bp_simpleParams": [ 0.179, -0.203, -0.552, 1.540, -0.904, -0.766 ], "bp_params": [ 0.177, -0.205, -0.552, 1.528, -0.924, -0.766 ], "frame": { "rmsd": null, "origin": [ 177.928, 169.271, 101.081 ], "x_axis": [ 0.768, -0.013, 0.640 ], "y_axis": [ -0.151, -0.975, 0.161 ], "z_axis": [ 0.622, -0.221, -0.751 ], "quaternion": [ 0.102, 0.935, -0.044, 0.337 ] } }, { "index": 343, "nt1": "///2/880", "nt2": "///2/906", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.714, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.892, "chi2": -161.570, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 62.111, "C1C1_dist": 10.148, "N1N9_dist": 8.498, "C6C8_dist": 9.492, "CNNC_torsion": -23.176, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.04],N1(imino)-O2(carbonyl)[2.72],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 29.092, "planarity": 0.372, "simple_Shear": -1.452, "simple_Stretch": -0.305, "simple_Buckle": -20.058, "simple_Propeller": -21.071, "bp_simpleParams": [ -1.452, -0.305, 0.361, -20.058, -21.071, 2.710 ], "bp_params": [ -1.402, -0.486, 0.361, -17.217, -23.450, 2.738 ], "frame": { "rmsd": null, "origin": [ 181.296, 168.761, 100.679 ], "x_axis": [ 0.013, -0.443, 0.896 ], "y_axis": [ -0.499, -0.780, -0.378 ], "z_axis": [ 0.867, -0.442, -0.231 ], "quaternion": [ 0.022, 0.711, -0.331, 0.620 ] } }, { "index": 344, "nt1": "///2/881", "nt2": "///2/905", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.558, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.655, "chi2": -145.733, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.204, "C1C1_dist": 10.663, "N1N9_dist": 8.863, "C6C8_dist": 9.724, "CNNC_torsion": 12.536, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 9.074, "planarity": 0.235, "simple_Shear": -0.098, "simple_Stretch": -0.344, "simple_Buckle": -8.991, "simple_Propeller": 1.225, "bp_simpleParams": [ -0.098, -0.344, -1.245, -8.991, 1.225, -2.391 ], "bp_params": [ -0.097, -0.345, -1.245, -8.998, 1.173, -2.383 ], "frame": { "rmsd": null, "origin": [ 185.871, 169.910, 99.866 ], "x_axis": [ -0.299, -0.615, 0.730 ], "y_axis": [ -0.399, -0.614, -0.681 ], "z_axis": [ 0.867, -0.495, -0.061 ], "quaternion": [ -0.079, 0.587, -0.432, 0.680 ] } }, { "index": 345, "nt1": "///2/882", "nt2": "///2/904", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.206, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.041, "chi2": -174.278, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.047, "C1C1_dist": 10.669, "N1N9_dist": 8.720, "C6C8_dist": 9.420, "CNNC_torsion": 23.986, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.92],O4(carbonyl)-N6(amino)[2.84]", "interBase_angle": 9.370, "planarity": 0.431, "simple_Shear": -0.275, "simple_Stretch": -0.620, "simple_Buckle": -5.296, "simple_Propeller": 7.729, "bp_simpleParams": [ -0.275, -0.620, -1.656, -5.296, 7.729, -11.506 ], "bp_params": [ -0.254, -0.628, -1.656, -5.544, 7.553, -11.518 ], "frame": { "rmsd": null, "origin": [ 190.486, 168.723, 100.270 ], "x_axis": [ -0.497, -0.826, 0.265 ], "y_axis": [ -0.251, -0.156, -0.955 ], "z_axis": [ 0.831, -0.541, -0.130 ], "quaternion": [ -0.233, 0.444, -0.606, 0.617 ] } }, { "index": 346, "nt1": "///2/883", "nt2": "///2/903", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.988, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.321, "chi2": -163.471, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.322, "C1C1_dist": 10.781, "N1N9_dist": 8.882, "C6C8_dist": 9.656, "CNNC_torsion": 23.427, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.86],O4(carbonyl)-N6(amino)[2.90]", "interBase_angle": 14.144, "planarity": 0.311, "simple_Shear": -0.260, "simple_Stretch": -0.333, "simple_Buckle": 2.903, "simple_Propeller": 13.843, "bp_simpleParams": [ -0.260, -0.333, -1.174, 2.903, 13.843, -8.484 ], "bp_params": [ -0.250, -0.340, -1.174, 2.491, 13.923, -8.545 ], "frame": { "rmsd": null, "origin": [ 193.667, 166.277, 101.015 ], "x_axis": [ -0.605, -0.751, -0.263 ], "y_axis": [ 0.039, 0.303, -0.952 ], "z_axis": [ 0.795, -0.587, -0.154 ], "quaternion": [ 0.369, -0.248, 0.718, -0.536 ] } }, { "index": 347, "nt1": "///2/884", "nt2": "///2/902", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -149.662, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.342, "chi2": 170.205, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 48.849, "C1C1_dist": 10.721, "N1N9_dist": 8.892, "C6C8_dist": 9.739, "CNNC_torsion": 20.192, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 23.662, "planarity": 0.317, "simple_Shear": 0.050, "simple_Stretch": -0.194, "simple_Buckle": 17.753, "simple_Propeller": 15.644, "bp_simpleParams": [ 0.050, -0.194, -0.893, 17.753, 15.644, -3.572 ], "bp_params": [ 0.048, -0.195, -0.893, 17.937, 15.433, -3.561 ], "frame": { "rmsd": null, "origin": [ 195.727, 162.218, 100.748 ], "x_axis": [ -0.561, -0.464, -0.686 ], "y_axis": [ 0.352, 0.616, -0.705 ], "z_axis": [ 0.750, -0.636, -0.182 ], "quaternion": [ 0.467, -0.037, 0.768, -0.437 ] } }, { "index": 348, "nt1": "///2/885", "nt2": "///2/901", "bp": "U-G", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.283, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.241, "chi2": -147.653, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.184, "C1C1_dist": 10.229, "N1N9_dist": 8.675, "C6C8_dist": 9.685, "CNNC_torsion": -6.305, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N1(imino)[2.71]", "interBase_angle": 24.144, "planarity": 0.519, "simple_Shear": -1.748, "simple_Stretch": -0.287, "simple_Buckle": -5.655, "simple_Propeller": -23.473, "bp_simpleParams": [ -1.748, -0.287, -1.509, -5.655, -23.473, 8.547 ], "bp_params": [ -1.668, -0.594, -1.509, -1.293, -24.109, 8.738 ], "frame": { "rmsd": null, "origin": [ 195.024, 158.033, 98.789 ], "x_axis": [ -0.596, 0.092, -0.798 ], "y_axis": [ 0.768, 0.357, -0.533 ], "z_axis": [ 0.236, -0.930, -0.283 ], "quaternion": [ 0.346, 0.287, 0.748, -0.489 ] } }, { "index": 349, "nt1": "///2/885", "nt2": "///2/902", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW-M", "intra_chain": true, "chi1": -155.283, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 79.764, "chi2": 170.205, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 47.801, "C1C1_dist": 8.102, "N1N9_dist": 6.860, "C6C8_dist": 7.888, "CNNC_torsion": -11.432, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O6(carbonyl)[2.52]", "interBase_angle": 39.971, "planarity": 0.984, "simple_Shear": 2.697, "simple_Stretch": -1.458, "simple_Buckle": 27.683, "simple_Propeller": 28.833, "bp_simpleParams": [ 2.697, -1.458, 2.035, 27.683, 28.833, 21.050 ], "bp_params": [ 2.122, -2.212, 2.035, 35.153, 19.025, 20.388 ], "frame": { "rmsd": null, "origin": [ 195.612, 160.278, 100.220 ], "x_axis": [ -0.522, -0.280, -0.805 ], "y_axis": [ 0.549, 0.613, -0.569 ], "z_axis": [ 0.653, -0.739, -0.166 ], "quaternion": [ 0.481, 0.088, 0.758, -0.431 ] } }, { "index": 350, "nt1": "///2/889", "nt2": "///2/899", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.774, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.826, "chi2": -164.015, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.716, "C1C1_dist": 8.078, "N1N9_dist": 6.638, "C6C8_dist": 7.863, "CNNC_torsion": -12.268, "hbonds_num": 2, "hbonds_desc": "O4(carbonyl)-N3(imino)[3.45],O4(carbonyl)*O4(carbonyl)[2.76]", "unusual_base2base_hbonds": 1, "interBase_angle": 13.213, "planarity": 0.438, "simple_Shear": -0.512, "simple_Stretch": -2.410, "simple_Buckle": 8.419, "simple_Propeller": 10.183, "bp_simpleParams": [ -0.512, -2.410, 1.981, 8.419, 10.183, 12.685 ], "bp_params": [ -0.396, -2.432, 1.981, 7.916, 10.579, 12.709 ], "frame": { "rmsd": null, "origin": [ 196.525, 150.187, 94.260 ], "x_axis": [ 0.668, 0.665, 0.335 ], "y_axis": [ 0.669, -0.733, 0.120 ], "z_axis": [ 0.325, 0.144, -0.935 ], "quaternion": [ -0.006, 0.913, 0.365, 0.181 ] } }, { "index": 351, "nt1": "///2/890", "nt2": "///2/897", "bp": "U-U", "name": "Calcutta", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -160.764, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 32.841, "chi2": -134.393, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 2.117, "C1C1_dist": 11.198, "N1N9_dist": 8.510, "C6C8_dist": 7.874, "CNNC_torsion": -155.035, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O4(carbonyl)[2.39]", "interBase_angle": 17.522, "planarity": 0.258, "simple_Shear": 3.015, "simple_Stretch": 0.529, "simple_Buckle": -2.163, "simple_Propeller": -17.388, "bp_simpleParams": [ 3.015, 0.529, 0.256, -2.163, -17.388, -77.419 ], "bp_params": [ 2.984, -0.682, 0.256, -8.724, -15.195, -77.751 ], "frame": { "rmsd": null, "origin": [ 195.010, 152.917, 85.236 ], "x_axis": [ 0.866, -0.150, 0.477 ], "y_axis": [ -0.037, -0.970, -0.239 ], "z_axis": [ 0.499, 0.189, -0.846 ], "quaternion": [ -0.112, 0.959, -0.049, 0.255 ] } }, { "index": 352, "nt1": "///2/920", "nt2": "///2/1021", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -159.254, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 15.492, "chi2": -146.041, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 23.912, "C1C1_dist": 10.143, "N1N9_dist": 7.453, "C6C8_dist": 6.280, "CNNC_torsion": 169.151, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[2.94],N6(amino)-O2(carbonyl)[2.87]", "interBase_angle": 6.070, "planarity": 0.156, "simple_Shear": -3.348, "simple_Stretch": 1.010, "simple_Buckle": 4.183, "simple_Propeller": -4.398, "bp_simpleParams": [ -3.348, 1.010, 0.602, 4.183, -4.398, -102.704 ], "bp_params": [ -3.350, -1.005, 0.602, 5.915, -1.361, -102.633 ], "frame": { "rmsd": null, "origin": [ 171.999, 188.233, 146.379 ], "x_axis": [ -0.226, -0.041, -0.973 ], "y_axis": [ -0.943, -0.242, 0.229 ], "z_axis": [ -0.245, 0.969, 0.016 ], "quaternion": [ 0.370, -0.500, 0.492, 0.609 ] } }, { "index": 353, "nt1": "///2/922", "nt2": "///2/1020", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "t.S", "DSSR": "t.-m", "intra_chain": true, "chi1": -162.694, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 15.057, "chi2": -128.616, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 92.573, "C1C1_dist": 11.294, "N1N9_dist": 10.005, "C6C8_dist": 10.640, "CNNC_torsion": 64.006, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.51]", "interBase_angle": 37.808, "planarity": 0.451, "simple_Shear": -6.364, "simple_Stretch": 3.337, "simple_Buckle": 7.236, "simple_Propeller": 37.109, "bp_simpleParams": [ -6.364, 3.337, -1.098, 7.236, 37.109, 1.123 ], "bp_params": [ -6.941, -1.863, -1.098, -20.050, 32.054, 1.152 ], "frame": { "rmsd": null, "origin": [ 169.027, 191.843, 140.300 ], "x_axis": [ -0.781, -0.150, -0.606 ], "y_axis": [ -0.620, 0.075, 0.781 ], "z_axis": [ -0.072, 0.986, -0.152 ], "quaternion": [ 0.188, -0.272, 0.709, 0.623 ] } }, { "index": 354, "nt1": "///2/922", "nt2": "///2/1022", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.694, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.609, "chi2": 158.074, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 50.038, "C1C1_dist": 10.377, "N1N9_dist": 8.609, "C6C8_dist": 9.509, "CNNC_torsion": -5.111, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.89],N1-N3(imino)[2.95]", "interBase_angle": 35.697, "planarity": 0.489, "simple_Shear": 0.056, "simple_Stretch": -0.498, "simple_Buckle": -18.131, "simple_Propeller": -30.750, "bp_simpleParams": [ 0.056, -0.498, -1.872, -18.131, -30.750, 9.071 ], "bp_params": [ 0.039, -0.499, -1.872, -18.942, -30.257, 9.277 ], "frame": { "rmsd": null, "origin": [ 171.777, 192.494, 141.524 ], "x_axis": [ -0.563, -0.633, -0.532 ], "y_axis": [ -0.698, 0.019, 0.716 ], "z_axis": [ -0.443, 0.774, -0.452 ], "quaternion": [ 0.031, -0.467, 0.713, 0.522 ] } }, { "index": 355, "nt1": "///2/923", "nt2": "///2/1019", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.541, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.351, "chi2": -163.135, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.148, "C1C1_dist": 10.755, "N1N9_dist": 8.948, "C6C8_dist": 9.874, "CNNC_torsion": 14.831, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 22.311, "planarity": 0.269, "simple_Shear": -0.212, "simple_Stretch": -0.142, "simple_Buckle": 3.562, "simple_Propeller": 22.025, "bp_simpleParams": [ -0.212, -0.142, 0.086, 3.562, 22.025, 1.114 ], "bp_params": [ -0.210, -0.145, 0.086, 3.224, 22.077, 1.135 ], "frame": { "rmsd": null, "origin": [ 168.773, 195.046, 139.851 ], "x_axis": [ -0.971, -0.106, 0.217 ], "y_axis": [ 0.216, 0.019, 0.976 ], "z_axis": [ -0.107, 0.994, 0.004 ], "quaternion": [ -0.115, 0.039, 0.704, 0.699 ] } }, { "index": 356, "nt1": "///2/924", "nt2": "///2/1018", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.073, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.790, "chi2": -160.001, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.445, "C1C1_dist": 10.599, "N1N9_dist": 8.902, "C6C8_dist": 9.780, "CNNC_torsion": 2.421, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.98],N1(imino)-O2(carbonyl)[2.99]", "interBase_angle": 8.721, "planarity": 0.164, "simple_Shear": -1.953, "simple_Stretch": -0.061, "simple_Buckle": -7.321, "simple_Propeller": -4.740, "bp_simpleParams": [ -1.953, -0.061, -0.857, -7.321, -4.740, -1.413 ], "bp_params": [ -1.906, -0.430, -0.857, -6.292, -6.039, -1.413 ], "frame": { "rmsd": null, "origin": [ 166.605, 197.843, 138.468 ], "x_axis": [ -0.598, -0.491, 0.634 ], "y_axis": [ 0.616, 0.225, 0.755 ], "z_axis": [ -0.513, 0.842, 0.168 ], "quaternion": [ -0.446, 0.049, 0.643, 0.621 ] } }, { "index": 357, "nt1": "///2/925", "nt2": "///2/1017", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.546, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.174, "chi2": -159.426, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.259, "C1C1_dist": 10.921, "N1N9_dist": 9.349, "C6C8_dist": 10.374, "CNNC_torsion": 8.495, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.14]", "interBase_angle": 17.280, "planarity": 0.244, "simple_Shear": 0.979, "simple_Stretch": 0.439, "simple_Buckle": -16.478, "simple_Propeller": -5.203, "bp_simpleParams": [ 0.979, 0.439, -1.356, -16.478, -5.203, 4.607 ], "bp_params": [ 1.020, 0.332, -1.356, -16.943, -3.394, 4.559 ], "frame": { "rmsd": null, "origin": [ 163.411, 200.532, 138.765 ], "x_axis": [ -0.011, -0.260, 0.965 ], "y_axis": [ 0.856, 0.497, 0.143 ], "z_axis": [ -0.517, 0.828, 0.217 ], "quaternion": [ 0.653, -0.262, -0.568, -0.428 ] } }, { "index": 358, "nt1": "///2/926", "nt2": "///2/1015", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.791, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.037, "chi2": -155.324, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.556, "C1C1_dist": 11.511, "N1N9_dist": 9.850, "C6C8_dist": 10.747, "CNNC_torsion": -3.703, "hbonds_num": 1, "hbonds_desc": "N1*O2(carbonyl)[3.79]", "interBase_angle": 3.250, "planarity": 0.136, "simple_Shear": -2.131, "simple_Stretch": 1.011, "simple_Buckle": -1.031, "simple_Propeller": 3.082, "bp_simpleParams": [ -2.131, 1.011, 0.652, -1.031, 3.082, -0.415 ], "bp_params": [ -2.296, 0.542, 0.652, -1.654, 2.798, -0.416 ], "frame": { "rmsd": null, "origin": [ 160.712, 202.171, 140.671 ], "x_axis": [ 0.435, -0.031, 0.900 ], "y_axis": [ 0.862, 0.302, -0.406 ], "z_axis": [ -0.259, 0.953, 0.158 ], "quaternion": [ 0.688, -0.494, -0.421, -0.325 ] } }, { "index": 359, "nt1": "///2/927", "nt2": "///2/1014", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.059, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.325, "chi2": -162.516, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.767, "C1C1_dist": 10.611, "N1N9_dist": 8.918, "C6C8_dist": 9.881, "CNNC_torsion": -7.116, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 2.538, "planarity": 0.162, "simple_Shear": 0.178, "simple_Stretch": -0.163, "simple_Buckle": 2.536, "simple_Propeller": -0.108, "bp_simpleParams": [ 0.178, -0.163, 0.613, 2.536, -0.108, 1.538 ], "bp_params": [ 0.176, -0.165, 0.613, 2.534, -0.142, 1.537 ], "frame": { "rmsd": null, "origin": [ 158.905, 205.027, 142.289 ], "x_axis": [ 0.890, 0.124, 0.439 ], "y_axis": [ 0.407, 0.219, -0.887 ], "z_axis": [ -0.206, 0.968, 0.145 ], "quaternion": [ 0.751, -0.618, -0.215, -0.094 ] } }, { "index": 360, "nt1": "///2/929", "nt2": "///2/1013", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -148.653, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.618, "chi2": -159.925, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.276, "C1C1_dist": 10.389, "N1N9_dist": 9.102, "C6C8_dist": 10.448, "CNNC_torsion": -19.820, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 12.324, "planarity": 0.400, "simple_Shear": -0.572, "simple_Stretch": 0.490, "simple_Buckle": -7.625, "simple_Propeller": -9.682, "bp_simpleParams": [ -0.572, 0.490, 1.626, -7.625, -9.682, 17.770 ], "bp_params": [ -0.595, 0.461, 1.626, -7.137, -10.047, 17.804 ], "frame": { "rmsd": null, "origin": [ 158.183, 208.981, 145.806 ], "x_axis": [ 0.854, -0.082, -0.514 ], "y_axis": [ -0.391, 0.551, -0.737 ], "z_axis": [ 0.343, 0.831, 0.438 ], "quaternion": [ 0.843, -0.465, 0.254, 0.092 ] } }, { "index": 361, "nt1": "///2/931", "nt2": "///2/1010", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.734, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.304, "chi2": -161.982, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.921, "C1C1_dist": 11.364, "N1N9_dist": 9.452, "C6C8_dist": 10.192, "CNNC_torsion": -17.252, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.60],N3-N1(imino)[3.32],N4(amino)-O6(carbonyl)[3.06]", "interBase_angle": 19.206, "planarity": 0.257, "simple_Shear": 0.125, "simple_Stretch": 0.208, "simple_Buckle": -6.694, "simple_Propeller": -18.002, "bp_simpleParams": [ 0.125, 0.208, 0.244, -6.694, -18.002, -8.468 ], "bp_params": [ 0.128, 0.207, 0.244, -6.895, -17.926, -8.557 ], "frame": { "rmsd": null, "origin": [ 163.713, 215.682, 148.001 ], "x_axis": [ -0.288, 0.349, -0.892 ], "y_axis": [ -0.881, 0.268, 0.389 ], "z_axis": [ 0.375, 0.898, 0.231 ], "quaternion": [ 0.550, -0.231, 0.576, 0.559 ] } }, { "index": 362, "nt1": "///2/932", "nt2": "///2/1009", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -147.362, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.026, "chi2": -168.530, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.378, "C1C1_dist": 13.357, "N1N9_dist": 11.315, "C6C8_dist": 11.691, "CNNC_torsion": 2.347, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[3.30],N1(imino)-N1[3.38]", "interBase_angle": 3.335, "planarity": 0.108, "simple_Shear": 0.035, "simple_Stretch": 1.961, "simple_Buckle": 1.172, "simple_Propeller": -3.122, "bp_simpleParams": [ 0.035, 1.961, -0.462, 1.172, -3.122, -18.629 ], "bp_params": [ 0.044, 1.961, -0.462, 1.157, -3.127, -18.635 ], "frame": { "rmsd": null, "origin": [ 166.209, 218.460, 148.049 ], "x_axis": [ -0.705, 0.381, -0.598 ], "y_axis": [ -0.575, 0.185, 0.797 ], "z_axis": [ 0.414, 0.906, 0.088 ], "quaternion": [ 0.377, -0.072, 0.671, 0.634 ] } }, { "index": 363, "nt1": "///2/933", "nt2": "///2/992", "bp": "G+A", "name": "--", "Saenger": "09-IX", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -151.484, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.007, "chi2": -179.855, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.362, "C1C1_dist": 11.719, "N1N9_dist": 9.531, "C6C8_dist": 9.021, "CNNC_torsion": 21.029, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N6(amino)[2.65]", "interBase_angle": 9.406, "planarity": 0.180, "simple_Shear": -3.219, "simple_Stretch": 2.142, "simple_Buckle": -5.922, "simple_Propeller": 7.307, "bp_simpleParams": [ -3.219, 2.142, 0.829, -5.922, 7.307, 100.686 ], "bp_params": [ -0.606, -3.819, 0.829, -4.176, -8.429, 100.801 ], "frame": { "rmsd": null, "origin": [ 167.387, 223.184, 164.055 ], "x_axis": [ 0.132, -0.427, 0.895 ], "y_axis": [ -0.838, -0.530, -0.129 ], "z_axis": [ 0.529, -0.733, -0.428 ], "quaternion": [ 0.209, 0.723, -0.437, 0.492 ] } }, { "index": 364, "nt1": "///2/934", "nt2": "///2/1008", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.587, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.557, "chi2": -167.793, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.090, "C1C1_dist": 12.468, "N1N9_dist": 10.557, "C6C8_dist": 11.103, "CNNC_torsion": 6.454, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[3.02],N1(imino)-N1[2.79]", "interBase_angle": 7.871, "planarity": 0.122, "simple_Shear": -0.935, "simple_Stretch": 1.354, "simple_Buckle": -5.567, "simple_Propeller": 5.565, "bp_simpleParams": [ -0.935, 1.354, -0.233, -5.567, 5.565, -11.235 ], "bp_params": [ -1.060, 1.259, -0.233, -6.074, 5.006, -11.230 ], "frame": { "rmsd": null, "origin": [ 169.307, 221.674, 145.999 ], "x_axis": [ -0.914, 0.376, -0.154 ], "y_axis": [ -0.183, -0.040, 0.982 ], "z_axis": [ 0.363, 0.926, 0.106 ], "quaternion": [ 0.194, 0.073, 0.665, 0.718 ] } }, { "index": 365, "nt1": "///2/935", "nt2": "///2/1007", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.660, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.058, "chi2": -159.073, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.217, "C1C1_dist": 10.860, "N1N9_dist": 9.005, "C6C8_dist": 9.888, "CNNC_torsion": 5.467, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 7.692, "planarity": 0.101, "simple_Shear": -0.162, "simple_Stretch": -0.130, "simple_Buckle": -2.430, "simple_Propeller": 7.299, "bp_simpleParams": [ -0.162, -0.130, -0.123, -2.430, 7.299, -1.276 ], "bp_params": [ -0.160, -0.132, -0.123, -2.512, 7.271, -1.279 ], "frame": { "rmsd": null, "origin": [ 169.823, 225.229, 144.538 ], "x_axis": [ -0.908, 0.232, 0.349 ], "y_axis": [ 0.294, -0.241, 0.925 ], "z_axis": [ 0.299, 0.942, 0.151 ], "quaternion": [ -0.020, 0.213, 0.616, 0.758 ] } }, { "index": 366, "nt1": "///2/936", "nt2": "///2/1006", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.541, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.550, "chi2": -170.253, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.571, "C1C1_dist": 10.613, "N1N9_dist": 8.920, "C6C8_dist": 9.891, "CNNC_torsion": 2.237, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 6.711, "planarity": 0.101, "simple_Shear": -0.180, "simple_Stretch": -0.138, "simple_Buckle": 1.630, "simple_Propeller": 6.510, "bp_simpleParams": [ -0.180, -0.138, 0.280, 1.630, 6.510, 1.804 ], "bp_params": [ -0.178, -0.140, 0.280, 1.542, 6.532, 1.807 ], "frame": { "rmsd": null, "origin": [ 169.425, 228.829, 143.910 ], "x_axis": [ -0.605, -0.048, 0.795 ], "y_axis": [ 0.763, -0.321, 0.561 ], "z_axis": [ 0.229, 0.946, 0.231 ], "quaternion": [ -0.276, 0.348, 0.513, 0.734 ] } }, { "index": 367, "nt1": "///2/937", "nt2": "///2/1005", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.807, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.093, "chi2": -177.509, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.766, "C1C1_dist": 10.589, "N1N9_dist": 8.891, "C6C8_dist": 9.855, "CNNC_torsion": -1.577, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 4.950, "planarity": 0.163, "simple_Shear": 0.214, "simple_Stretch": -0.176, "simple_Buckle": 3.620, "simple_Propeller": 3.376, "bp_simpleParams": [ 0.214, -0.176, 0.507, 3.620, 3.376, 1.872 ], "bp_params": [ 0.211, -0.180, 0.507, 3.677, 3.314, 1.872 ], "frame": { "rmsd": null, "origin": [ 168.203, 232.466, 144.446 ], "x_axis": [ -0.102, -0.246, 0.964 ], "y_axis": [ 0.975, -0.216, 0.048 ], "z_axis": [ 0.197, 0.945, 0.262 ], "quaternion": [ -0.486, 0.462, 0.395, 0.629 ] } }, { "index": 368, "nt1": "///2/938", "nt2": "///2/1004", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.866, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.118, "chi2": -160.343, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.282, "C1C1_dist": 10.600, "N1N9_dist": 8.912, "C6C8_dist": 9.866, "CNNC_torsion": 4.022, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.88]", "interBase_angle": 5.886, "planarity": 0.115, "simple_Shear": 0.112, "simple_Stretch": -0.092, "simple_Buckle": -5.705, "simple_Propeller": -1.447, "bp_simpleParams": [ 0.112, -0.092, -0.625, -5.705, -1.447, 0.611 ], "bp_params": [ 0.110, -0.094, -0.625, -5.728, -1.352, 0.610 ], "frame": { "rmsd": null, "origin": [ 166.808, 235.315, 146.400 ], "x_axis": [ 0.400, -0.536, 0.743 ], "y_axis": [ 0.915, 0.193, -0.354 ], "z_axis": [ 0.047, 0.822, 0.568 ], "quaternion": [ 0.735, -0.400, -0.237, -0.494 ] } }, { "index": 369, "nt1": "///2/939", "nt2": "///2/1003", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.609, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.989, "chi2": -162.875, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.561, "C1C1_dist": 10.126, "N1N9_dist": 8.059, "C6C8_dist": 8.724, "CNNC_torsion": 14.333, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O4(carbonyl)[2.84]", "interBase_angle": 4.423, "planarity": 0.180, "simple_Shear": 2.123, "simple_Stretch": -1.063, "simple_Buckle": -4.230, "simple_Propeller": 1.291, "bp_simpleParams": [ 2.123, -1.063, -0.819, -4.230, 1.291, -18.201 ], "bp_params": [ 1.848, -1.490, -0.819, -3.859, 2.160, -18.194 ], "frame": { "rmsd": null, "origin": [ 165.014, 238.138, 148.835 ], "x_axis": [ 0.856, -0.352, 0.379 ], "y_axis": [ 0.512, 0.465, -0.723 ], "z_axis": [ 0.079, 0.812, 0.578 ], "quaternion": [ 0.851, -0.451, -0.088, -0.254 ] } }, { "index": 370, "nt1": "///2/940", "nt2": "///2/1002", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.021, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.629, "chi2": -165.522, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.340, "C1C1_dist": 8.851, "N1N9_dist": 7.265, "C6C8_dist": 8.472, "CNNC_torsion": 3.257, "hbonds_num": 3, "hbonds_desc": "N3(imino)*N3(imino)[3.24],N3(imino)-O4(carbonyl)[3.37],O4(carbonyl)*O4(carbonyl)[2.86]", "unusual_base2base_hbonds": 2, "interBase_angle": 7.816, "planarity": 0.141, "simple_Shear": 0.787, "simple_Stretch": -1.584, "simple_Buckle": -6.724, "simple_Propeller": -3.986, "bp_simpleParams": [ 0.787, -1.584, -0.608, -6.724, -3.986, 6.003 ], "bp_params": [ 0.659, -1.641, -0.608, -7.019, -3.439, 5.995 ], "frame": { "rmsd": null, "origin": [ 166.499, 239.450, 152.559 ], "x_axis": [ 0.982, -0.114, -0.152 ], "y_axis": [ -0.051, 0.615, -0.787 ], "z_axis": [ 0.184, 0.780, 0.598 ], "quaternion": [ 0.894, -0.438, 0.094, -0.018 ] } }, { "index": 371, "nt1": "///2/941", "nt2": "///2/985", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.290, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.545, "chi2": -140.473, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.621, "C1C1_dist": 10.750, "N1N9_dist": 8.959, "C6C8_dist": 9.875, "CNNC_torsion": -0.089, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 4.698, "planarity": 0.144, "simple_Shear": 0.192, "simple_Stretch": -0.154, "simple_Buckle": -3.352, "simple_Propeller": -3.292, "bp_simpleParams": [ 0.192, -0.154, -0.432, -3.352, -3.292, 0.062 ], "bp_params": [ 0.189, -0.157, -0.432, -3.399, -3.243, 0.062 ], "frame": { "rmsd": null, "origin": [ 167.371, 240.444, 156.661 ], "x_axis": [ 0.824, 0.155, -0.544 ], "y_axis": [ -0.521, 0.584, -0.623 ], "z_axis": [ 0.221, 0.797, 0.562 ], "quaternion": [ 0.862, -0.412, 0.222, 0.196 ] } }, { "index": 372, "nt1": "///2/942", "nt2": "///2/984", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.029, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.950, "chi2": -166.208, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.359, "C1C1_dist": 10.638, "N1N9_dist": 8.945, "C6C8_dist": 9.924, "CNNC_torsion": -2.329, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.99],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 7.637, "planarity": 0.121, "simple_Shear": -0.236, "simple_Stretch": -0.107, "simple_Buckle": -4.904, "simple_Propeller": -5.854, "bp_simpleParams": [ -0.236, -0.107, -0.519, -4.904, -5.854, 2.950 ], "bp_params": [ -0.235, -0.111, -0.519, -4.801, -5.939, 2.952 ], "frame": { "rmsd": null, "origin": [ 169.229, 243.091, 158.767 ], "x_axis": [ 0.404, 0.396, -0.825 ], "y_axis": [ -0.879, 0.419, -0.229 ], "z_axis": [ 0.255, 0.817, 0.517 ], "quaternion": [ 0.765, -0.342, 0.353, 0.417 ] } }, { "index": 373, "nt1": "///2/943", "nt2": "///2/983", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "intra_chain": true, "chi1": -179.902, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 19.611, "chi2": -172.618, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.049, "C1C1_dist": 13.764, "N1N9_dist": 11.196, "C6C8_dist": 10.935, "CNNC_torsion": -0.403, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[3.18]", "interBase_angle": 2.570, "planarity": 0.032, "simple_Shear": -1.579, "simple_Stretch": 2.094, "simple_Buckle": 0.559, "simple_Propeller": 2.509, "bp_simpleParams": [ -1.579, 2.094, 0.132, 0.559, 2.509, -50.746 ], "bp_params": [ -1.918, 1.788, 0.132, 0.116, 2.568, -50.757 ], "frame": { "rmsd": null, "origin": [ 170.564, 244.477, 162.975 ], "x_axis": [ 0.046, 0.444, -0.895 ], "y_axis": [ -0.957, 0.276, 0.088 ], "z_axis": [ 0.286, 0.853, 0.438 ], "quaternion": [ 0.663, -0.288, 0.445, 0.528 ] } }, { "index": 374, "nt1": "///2/944", "nt2": "///2/982", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.246, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.917, "chi2": -167.502, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.256, "C1C1_dist": 12.685, "N1N9_dist": 10.599, "C6C8_dist": 10.947, "CNNC_torsion": -2.913, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O6(carbonyl)[2.88],N1-N1(imino)[2.92]", "interBase_angle": 2.714, "planarity": 0.086, "simple_Shear": 1.239, "simple_Stretch": 1.314, "simple_Buckle": -2.033, "simple_Propeller": 1.798, "bp_simpleParams": [ 1.239, 1.314, 0.378, -2.033, 1.798, -18.971 ], "bp_params": [ 1.396, 1.146, 0.378, -1.788, 2.041, -18.972 ], "frame": { "rmsd": null, "origin": [ 172.443, 248.096, 161.865 ], "x_axis": [ -0.630, 0.456, -0.629 ], "y_axis": [ -0.740, -0.107, 0.664 ], "z_axis": [ 0.236, 0.884, 0.404 ], "quaternion": [ 0.409, -0.134, 0.529, 0.732 ] } }, { "index": 375, "nt1": "///2/945", "nt2": "///2/981", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.670, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.137, "chi2": -163.050, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.797, "C1C1_dist": 10.857, "N1N9_dist": 8.995, "C6C8_dist": 9.844, "CNNC_torsion": -4.618, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.92],O4(carbonyl)-N6(amino)[2.91]", "interBase_angle": 4.895, "planarity": 0.144, "simple_Shear": -0.078, "simple_Stretch": -0.117, "simple_Buckle": -0.472, "simple_Propeller": 4.872, "bp_simpleParams": [ -0.078, -0.117, 0.657, -0.472, 4.872, -2.923 ], "bp_params": [ -0.076, -0.118, 0.657, -0.535, 4.865, -2.925 ], "frame": { "rmsd": null, "origin": [ 173.628, 251.556, 161.548 ], "x_axis": [ -0.927, 0.257, -0.272 ], "y_axis": [ -0.350, -0.337, 0.874 ], "z_axis": [ 0.133, 0.906, 0.402 ], "quaternion": [ 0.186, -0.043, 0.545, 0.816 ] } }, { "index": 376, "nt1": "///2/946", "nt2": "///2/980", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.094, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.111, "chi2": -168.596, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.316, "C1C1_dist": 10.615, "N1N9_dist": 8.885, "C6C8_dist": 9.823, "CNNC_torsion": -0.167, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.89],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 9.527, "planarity": 0.184, "simple_Shear": -0.054, "simple_Stretch": -0.125, "simple_Buckle": 5.889, "simple_Propeller": 7.488, "bp_simpleParams": [ -0.054, -0.125, 0.523, 5.889, 7.488, 0.703 ], "bp_params": [ -0.053, -0.125, 0.523, 5.820, 7.542, 0.704 ], "frame": { "rmsd": null, "origin": [ 173.371, 254.945, 161.428 ], "x_axis": [ -0.974, -0.071, 0.215 ], "y_axis": [ 0.225, -0.391, 0.893 ], "z_axis": [ 0.021, 0.918, 0.397 ], "quaternion": [ -0.089, 0.071, 0.545, 0.831 ] } }, { "index": 377, "nt1": "///2/947", "nt2": "///2/979", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.594, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.859, "chi2": -159.715, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.901, "C1C1_dist": 10.595, "N1N9_dist": 8.895, "C6C8_dist": 9.858, "CNNC_torsion": -0.023, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 7.874, "planarity": 0.202, "simple_Shear": -0.212, "simple_Stretch": -0.173, "simple_Buckle": 4.568, "simple_Propeller": -6.413, "bp_simpleParams": [ -0.212, -0.173, -0.555, 4.568, -6.413, 2.212 ], "bp_params": [ -0.208, -0.177, -0.555, 4.678, -6.334, 2.213 ], "frame": { "rmsd": null, "origin": [ 172.299, 258.037, 161.446 ], "x_axis": [ -0.684, -0.448, 0.575 ], "y_axis": [ 0.687, -0.132, 0.714 ], "z_axis": [ -0.244, 0.884, 0.398 ], "quaternion": [ -0.381, 0.111, 0.537, 0.744 ] } }, { "index": 378, "nt1": "///2/948", "nt2": "///2/978", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.025, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.337, "chi2": -171.188, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.005, "C1C1_dist": 11.527, "N1N9_dist": 9.679, "C6C8_dist": 10.442, "CNNC_torsion": 1.486, "hbonds_num": 2, "hbonds_desc": "N3-N1(imino)[3.61],N4(amino)-O6(carbonyl)[3.28]", "interBase_angle": 16.155, "planarity": 0.260, "simple_Shear": -0.715, "simple_Stretch": 0.420, "simple_Buckle": 8.474, "simple_Propeller": -13.754, "bp_simpleParams": [ -0.715, 0.420, -1.234, 8.474, -13.754, -5.299 ], "bp_params": [ -0.746, 0.361, -1.234, 9.535, -13.040, -5.315 ], "frame": { "rmsd": null, "origin": [ 170.218, 261.178, 161.600 ], "x_axis": [ -0.264, -0.434, 0.861 ], "y_axis": [ 0.922, 0.147, 0.357 ], "z_axis": [ -0.282, 0.889, 0.362 ], "quaternion": [ 0.558, -0.238, -0.512, -0.608 ] } }, { "index": 379, "nt1": "///2/949", "nt2": "///2/977", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.643, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.339, "chi2": -158.561, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.221, "C1C1_dist": 10.615, "N1N9_dist": 8.909, "C6C8_dist": 9.861, "CNNC_torsion": -4.786, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 4.672, "planarity": 0.184, "simple_Shear": -0.182, "simple_Stretch": -0.179, "simple_Buckle": -4.279, "simple_Propeller": 1.874, "bp_simpleParams": [ -0.182, -0.179, 0.607, -4.279, 1.874, 1.291 ], "bp_params": [ -0.179, -0.182, 0.607, -4.305, 1.815, 1.290 ], "frame": { "rmsd": null, "origin": [ 167.830, 263.792, 163.421 ], "x_axis": [ 0.331, -0.660, 0.674 ], "y_axis": [ 0.943, 0.225, -0.243 ], "z_axis": [ 0.009, 0.717, 0.697 ], "quaternion": [ 0.751, -0.320, -0.222, -0.534 ] } }, { "index": 380, "nt1": "///2/950", "nt2": "///2/976", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.679, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.304, "chi2": -165.074, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.293, "C1C1_dist": 10.537, "N1N9_dist": 8.897, "C6C8_dist": 9.894, "CNNC_torsion": 1.255, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 6.125, "planarity": 0.121, "simple_Shear": 0.202, "simple_Stretch": -0.142, "simple_Buckle": -0.972, "simple_Propeller": 6.047, "bp_simpleParams": [ 0.202, -0.142, 0.408, -0.972, 6.047, 2.868 ], "bp_params": [ 0.200, -0.145, 0.408, -0.877, 6.062, 2.872 ], "frame": { "rmsd": null, "origin": [ 166.416, 265.657, 166.522 ], "x_axis": [ 0.786, -0.468, 0.404 ], "y_axis": [ 0.615, 0.530, -0.584 ], "z_axis": [ 0.059, 0.707, 0.704 ], "quaternion": [ 0.869, -0.371, -0.099, -0.312 ] } }, { "index": 381, "nt1": "///2/951", "nt2": "///2/975", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.365, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.202, "chi2": -169.242, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.355, "C1C1_dist": 10.586, "N1N9_dist": 8.902, "C6C8_dist": 9.868, "CNNC_torsion": -7.352, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 1.855, "planarity": 0.160, "simple_Shear": 0.164, "simple_Stretch": -0.185, "simple_Buckle": 1.188, "simple_Propeller": -1.424, "bp_simpleParams": [ 0.164, -0.185, 0.676, 1.188, -1.424, 1.184 ], "bp_params": [ 0.162, -0.187, 0.676, 1.171, -1.438, 1.184 ], "frame": { "rmsd": null, "origin": [ 165.921, 266.504, 170.073 ], "x_axis": [ 0.970, -0.240, -0.047 ], "y_axis": [ 0.143, 0.713, -0.686 ], "z_axis": [ 0.198, 0.659, 0.726 ], "quaternion": [ 0.923, -0.364, 0.066, -0.104 ] } }, { "index": 382, "nt1": "///2/952", "nt2": "///2/974", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -138.444, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.303, "chi2": -172.028, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.880, "C1C1_dist": 11.193, "N1N9_dist": 9.568, "C6C8_dist": 10.618, "CNNC_torsion": 11.579, "hbonds_num": 2, "hbonds_desc": "N1(imino)-N3[3.78],N2(amino)-O2(carbonyl)[3.36]", "interBase_angle": 22.851, "planarity": 0.361, "simple_Shear": -0.535, "simple_Stretch": 0.757, "simple_Buckle": 20.379, "simple_Propeller": 10.336, "bp_simpleParams": [ -0.535, 0.757, -0.624, 20.379, 10.336, 5.898 ], "bp_params": [ -0.565, 0.734, -0.624, 19.981, 11.086, 5.837 ], "frame": { "rmsd": null, "origin": [ 166.652, 266.822, 172.870 ], "x_axis": [ 0.846, 0.064, -0.529 ], "y_axis": [ -0.321, 0.853, -0.411 ], "z_axis": [ 0.425, 0.517, 0.743 ], "quaternion": [ 0.928, -0.250, 0.257, 0.104 ] } }, { "index": 383, "nt1": "///2/954", "nt2": "///2/972", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -161.699, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.165, "chi2": 170.981, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 8.380, "C1C1_dist": 11.007, "N1N9_dist": 8.764, "C6C8_dist": 8.600, "CNNC_torsion": -91.695, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.47]", "interBase_angle": 28.361, "planarity": 0.288, "simple_Shear": 4.747, "simple_Stretch": 0.876, "simple_Buckle": 25.934, "simple_Propeller": -11.479, "bp_simpleParams": [ 4.747, 0.876, -1.258, 25.934, -11.479, -45.718 ], "bp_params": [ 4.524, -1.684, -1.258, 16.492, -23.072, -46.142 ], "frame": { "rmsd": null, "origin": [ 171.526, 268.138, 178.966 ], "x_axis": [ -0.156, 0.894, -0.419 ], "y_axis": [ -0.774, 0.153, 0.615 ], "z_axis": [ 0.614, 0.420, 0.668 ], "quaternion": [ 0.645, 0.075, 0.400, 0.647 ] } }, { "index": 384, "nt1": "///2/955", "nt2": "///2/971", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -116.174, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 10.995, "chi2": -112.437, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 88.082, "C1C1_dist": 10.049, "N1N9_dist": 8.645, "C6C8_dist": 9.040, "CNNC_torsion": 37.697, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.57],N6(amino)-N3[2.68]", "interBase_angle": 28.993, "planarity": 0.381, "simple_Shear": -6.844, "simple_Stretch": 2.006, "simple_Buckle": 13.726, "simple_Propeller": 25.538, "bp_simpleParams": [ -6.844, 2.006, 0.522, 13.726, 25.538, -7.388 ], "bp_params": [ -6.270, -3.399, 0.522, -8.393, 27.751, -7.590 ], "frame": { "rmsd": null, "origin": [ 174.346, 272.533, 178.971 ], "x_axis": [ -0.137, 0.850, -0.508 ], "y_axis": [ -0.546, 0.363, 0.755 ], "z_axis": [ 0.826, 0.381, 0.414 ], "quaternion": [ 0.640, 0.146, 0.521, 0.545 ] } }, { "index": 385, "nt1": "///2/956", "nt2": "///2/967", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.760, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.487, "chi2": -143.119, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.575, "C1C1_dist": 10.456, "N1N9_dist": 8.767, "C6C8_dist": 9.650, "CNNC_torsion": 14.878, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 20.309, "planarity": 0.301, "simple_Shear": -0.052, "simple_Stretch": -0.345, "simple_Buckle": -20.192, "simple_Propeller": 2.174, "bp_simpleParams": [ -0.052, -0.345, -1.542, -20.192, 2.174, -1.562 ], "bp_params": [ -0.051, -0.345, -1.542, -20.200, 2.101, -1.538 ], "frame": { "rmsd": null, "origin": [ 179.703, 263.310, 183.456 ], "x_axis": [ 0.708, 0.080, 0.702 ], "y_axis": [ -0.701, 0.207, 0.683 ], "z_axis": [ -0.090, -0.975, 0.202 ], "quaternion": [ 0.727, 0.570, -0.272, 0.268 ] } }, { "index": 386, "nt1": "///2/957", "nt2": "///2/966", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.250, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.508, "chi2": -156.243, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.923, "C1C1_dist": 10.399, "N1N9_dist": 8.755, "C6C8_dist": 9.682, "CNNC_torsion": -2.302, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.85]", "interBase_angle": 29.701, "planarity": 0.321, "simple_Shear": 0.041, "simple_Stretch": -0.004, "simple_Buckle": -27.476, "simple_Propeller": -11.278, "bp_simpleParams": [ 0.041, -0.004, -0.721, -27.476, -11.278, 1.607 ], "bp_params": [ 0.041, -0.005, -0.721, -27.766, -10.546, 1.567 ], "frame": { "rmsd": null, "origin": [ 181.049, 259.675, 184.341 ], "x_axis": [ 0.215, 0.515, 0.830 ], "y_axis": [ -0.976, 0.128, 0.174 ], "z_axis": [ -0.017, -0.848, 0.530 ], "quaternion": [ 0.684, 0.373, -0.309, 0.545 ] } }, { "index": 387, "nt1": "///2/964", "nt2": "///2/1054", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "c.S", "DSSR": "c.-m", "intra_chain": true, "chi1": -123.005, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 104.400, "chi2": -152.063, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 148.080, "C1C1_dist": 4.938, "N1N9_dist": 6.591, "C6C8_dist": 9.184, "CNNC_torsion": 3.570, "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[3.61]", "interBase_angle": 26.725, "planarity": 0.325, "simple_Shear": -0.625, "simple_Stretch": 6.440, "simple_Buckle": 25.953, "simple_Propeller": -6.377, "bp_simpleParams": [ -0.625, 6.440, 0.265, 25.953, -6.377, 147.281 ], "bp_params": [ -1.893, 6.187, 0.265, 26.706, -0.988, 146.423 ], "frame": { "rmsd": null, "origin": [ 187.785, 249.630, 187.306 ], "x_axis": [ -0.306, -0.928, -0.212 ], "y_axis": [ -0.939, 0.257, 0.229 ], "z_axis": [ -0.158, 0.269, -0.950 ], "quaternion": [ 0.017, -0.589, 0.793, 0.157 ] } }, { "index": 388, "nt1": "///2/965", "nt2": "///2/1065", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -141.983, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.462, "chi2": -175.537, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 90.565, "C1C1_dist": 8.626, "N1N9_dist": 7.911, "C6C8_dist": 9.937, "CNNC_torsion": 164.252, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.56],O4(carbonyl)-O2'(hydroxyl)[3.68]", "interBase_angle": 24.363, "planarity": 0.341, "simple_Shear": 5.371, "simple_Stretch": 2.862, "simple_Buckle": -18.233, "simple_Propeller": -16.159, "bp_simpleParams": [ 5.371, 2.862, 0.096, -18.233, -16.159, 128.871 ], "bp_params": [ 0.999, 6.004, 0.096, 1.698, -24.304, 129.870 ], "frame": { "rmsd": null, "origin": [ 188.500, 250.909, 183.658 ], "x_axis": [ -0.628, -0.774, 0.081 ], "y_axis": [ -0.759, 0.632, 0.157 ], "z_axis": [ -0.173, 0.038, -0.984 ], "quaternion": [ -0.070, -0.426, 0.901, 0.054 ] } }, { "index": 389, "nt1": "///2/982", "nt2": "///2/1045", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "tSS", "DSSR": "tm-m", "intra_chain": true, "chi1": -167.502, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 87.345, "chi2": -171.511, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.542, "C1C1_dist": 4.533, "N1N9_dist": 4.579, "C6C8_dist": 5.920, "CNNC_torsion": 146.159, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.03]", "interBase_angle": 51.887, "planarity": 0.898, "simple_Shear": 1.704, "simple_Stretch": 7.658, "simple_Buckle": 48.008, "simple_Propeller": 19.685, "bp_simpleParams": [ 1.704, 7.658, 1.865, 48.008, 19.685, -127.438 ], "bp_params": [ 1.227, -7.749, 1.865, -38.078, -35.248, -126.911 ], "frame": { "rmsd": null, "origin": [ 176.651, 245.636, 162.639 ], "x_axis": [ 0.341, 0.580, -0.740 ], "y_axis": [ 0.816, -0.573, -0.074 ], "z_axis": [ -0.466, -0.579, -0.669 ], "quaternion": [ 0.157, 0.803, 0.435, -0.375 ] } }, { "index": 390, "nt1": "///2/990", "nt2": "///2/1001", "bp": "A+A", "name": "--", "Saenger": "01-I", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": 64.224, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 30.030, "chi2": -102.529, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 28.477, "C1C1_dist": 14.540, "N1N9_dist": 12.058, "C6C8_dist": 12.246, "CNNC_torsion": -146.213, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N1[3.96],N1-N6(amino)[3.83]", "interBase_angle": 20.298, "planarity": 0.257, "simple_Shear": -1.244, "simple_Stretch": 2.546, "simple_Buckle": 7.905, "simple_Propeller": 18.696, "bp_simpleParams": [ -1.244, 2.546, -0.226, 7.905, 18.696, -177.767 ], "bp_params": [ 2.381, 1.537, -0.226, 19.515, -5.587, -177.737 ], "frame": { "rmsd": null, "origin": [ 163.892, 225.177, 164.458 ], "x_axis": [ -0.745, -0.550, 0.377 ], "y_axis": [ 0.530, -0.145, 0.836 ], "z_axis": [ -0.405, 0.822, 0.399 ], "quaternion": [ -0.357, -0.009, 0.548, 0.757 ] } }, { "index": 391, "nt1": "///2/993", "nt2": "///2/1000", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.928, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.853, "chi2": -158.273, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.177, "C1C1_dist": 10.724, "N1N9_dist": 8.966, "C6C8_dist": 9.888, "CNNC_torsion": 2.953, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 1.705, "planarity": 0.064, "simple_Shear": -0.182, "simple_Stretch": -0.142, "simple_Buckle": -1.630, "simple_Propeller": 0.499, "bp_simpleParams": [ -0.182, -0.142, -0.336, -1.630, 0.499, -0.307 ], "bp_params": [ -0.180, -0.145, -0.336, -1.637, 0.477, -0.307 ], "frame": { "rmsd": null, "origin": [ 169.098, 221.148, 161.474 ], "x_axis": [ 0.356, -0.155, 0.922 ], "y_axis": [ -0.758, -0.624, 0.188 ], "z_axis": [ 0.546, -0.766, -0.340 ], "quaternion": [ 0.313, 0.762, -0.300, 0.482 ] } }, { "index": 392, "nt1": "///2/994", "nt2": "///2/999", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.797, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.706, "chi2": -161.489, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.665, "C1C1_dist": 10.670, "N1N9_dist": 8.941, "C6C8_dist": 9.875, "CNNC_torsion": 4.641, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 1.981, "planarity": 0.088, "simple_Shear": 0.191, "simple_Stretch": -0.160, "simple_Buckle": 1.907, "simple_Propeller": 0.536, "bp_simpleParams": [ 0.191, -0.160, -0.450, 1.907, 0.536, 0.106 ], "bp_params": [ 0.188, -0.163, -0.450, 1.914, 0.508, 0.106 ], "frame": { "rmsd": null, "origin": [ 172.317, 219.209, 160.295 ], "x_axis": [ -0.109, -0.440, 0.891 ], "y_axis": [ -0.835, -0.446, -0.322 ], "z_axis": [ 0.539, -0.780, -0.319 ], "quaternion": [ 0.178, 0.643, -0.496, 0.556 ] } }, { "index": 393, "nt1": "///2/995", "nt2": "///2/998", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -160.764, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 79.607, "chi2": -169.660, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 20.613, "C1C1_dist": 10.405, "N1N9_dist": 8.967, "C6C8_dist": 8.798, "CNNC_torsion": -159.027, "hbonds_num": 3, "hbonds_desc": "N1(imino)-OP2[2.97],N2(amino)-OP2[2.95],N2(amino)-N7[2.89]", "interBase_angle": 24.714, "planarity": 0.360, "simple_Shear": 7.758, "simple_Stretch": 4.896, "simple_Buckle": 1.151, "simple_Propeller": 24.687, "bp_simpleParams": [ 7.758, 4.896, -0.416, 1.151, 24.687, -52.746 ], "bp_params": [ 7.787, -4.849, -0.416, 22.714, 9.738, -52.017 ], "frame": { "rmsd": null, "origin": [ 177.243, 219.461, 158.084 ], "x_axis": [ -0.765, -0.619, 0.177 ], "y_axis": [ -0.368, 0.196, -0.909 ], "z_axis": [ 0.528, -0.761, -0.378 ], "quaternion": [ 0.115, -0.323, 0.765, -0.546 ] } }, { "index": 394, "nt1": "///2/1033", "nt2": "///2/1084", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -167.093, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 123.612, "chi2": -140.526, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 75.230, "C1C1_dist": 9.365, "N1N9_dist": 9.807, "C6C8_dist": 12.061, "CNNC_torsion": -1.761, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.45]", "interBase_angle": 5.521, "planarity": 0.081, "simple_Shear": 2.284, "simple_Stretch": 5.391, "simple_Buckle": 5.453, "simple_Propeller": 0.863, "bp_simpleParams": [ 2.284, 5.391, -0.174, 5.453, 0.863, 89.101 ], "bp_params": [ 3.878, 4.386, -0.174, 5.445, -0.914, 89.038 ], "frame": { "rmsd": null, "origin": [ 191.251, 217.460, 159.270 ], "x_axis": [ 0.919, -0.146, -0.367 ], "y_axis": [ -0.271, 0.444, -0.854 ], "z_axis": [ 0.288, 0.884, 0.369 ], "quaternion": [ 0.826, -0.526, 0.198, 0.038 ] } }, { "index": 395, "nt1": "///2/1034", "nt2": "///2/1081", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 169.164, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.989, "chi2": -165.602, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.145, "C1C1_dist": 10.129, "N1N9_dist": 7.654, "C6C8_dist": 6.917, "CNNC_torsion": 130.018, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.30],N6(amino)-O2(carbonyl)[2.84]", "interBase_angle": 22.574, "planarity": 0.370, "simple_Shear": -4.391, "simple_Stretch": 0.876, "simple_Buckle": 16.316, "simple_Propeller": -15.600, "bp_simpleParams": [ -4.391, 0.876, -0.838, 16.316, -15.600, -81.824 ], "bp_params": [ -4.040, -1.931, -0.838, 22.411, -2.703, -80.749 ], "frame": { "rmsd": null, "origin": [ 187.904, 222.865, 165.336 ], "x_axis": [ 0.266, -0.632, -0.728 ], "y_axis": [ -0.864, 0.178, -0.470 ], "z_axis": [ 0.427, 0.754, -0.499 ], "quaternion": [ -0.486, 0.630, -0.594, -0.120 ] } }, { "index": 396, "nt1": "///2/1035", "nt2": "///2/1081", "bp": "A-U", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W-W", "intra_chain": true, "chi1": -146.160, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 24.559, "chi2": -165.602, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 71.101, "C1C1_dist": 10.395, "N1N9_dist": 8.626, "C6C8_dist": 9.134, "CNNC_torsion": -46.031, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.56]", "interBase_angle": 37.066, "planarity": 0.501, "simple_Shear": -3.542, "simple_Stretch": 0.101, "simple_Buckle": 22.152, "simple_Propeller": -29.719, "bp_simpleParams": [ -3.542, 0.101, 2.085, 22.152, -29.719, -19.809 ], "bp_params": [ -3.293, -1.306, 2.085, 31.994, -18.716, -19.328 ], "frame": { "rmsd": null, "origin": [ 189.195, 223.143, 164.252 ], "x_axis": [ -0.188, -0.423, -0.887 ], "y_axis": [ -0.820, 0.564, -0.095 ], "z_axis": [ 0.540, 0.709, -0.453 ], "quaternion": [ 0.480, -0.418, 0.742, 0.207 ] } }, { "index": 397, "nt1": "///2/1035", "nt2": "///2/1843", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -146.160, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.089, "chi2": -155.973, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 83.154, "C1C1_dist": 8.502, "N1N9_dist": 8.096, "C6C8_dist": 10.377, "CNNC_torsion": -178.521, "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.09]", "interBase_angle": 20.514, "planarity": 0.316, "simple_Shear": 7.038, "simple_Stretch": 3.873, "simple_Buckle": -20.335, "simple_Propeller": -2.705, "bp_simpleParams": [ 7.038, 3.873, -0.517, -20.335, -2.705, 157.284 ], "bp_params": [ 2.526, 7.626, -0.517, -13.089, -15.795, 157.348 ], "frame": { "rmsd": null, "origin": [ 190.189, 226.273, 168.733 ], "x_axis": [ 0.522, -0.831, 0.194 ], "y_axis": [ -0.006, -0.232, -0.973 ], "z_axis": [ 0.853, 0.506, -0.126 ], "quaternion": [ 0.539, -0.685, 0.305, -0.382 ] } }, { "index": 398, "nt1": "///2/1037", "nt2": "///2/1078", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.480, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.920, "chi2": 161.516, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.779, "C1C1_dist": 10.385, "N1N9_dist": 8.703, "C6C8_dist": 9.655, "CNNC_torsion": -9.082, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.94],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 19.467, "planarity": 0.331, "simple_Shear": -0.175, "simple_Stretch": -0.395, "simple_Buckle": 17.140, "simple_Propeller": 9.229, "bp_simpleParams": [ -0.175, -0.395, 1.671, 17.140, 9.229, 5.078 ], "bp_params": [ -0.173, -0.396, 1.671, 17.101, 9.300, 5.039 ], "frame": { "rmsd": null, "origin": [ 194.215, 228.908, 157.294 ], "x_axis": [ -0.988, 0.108, -0.113 ], "y_axis": [ -0.113, 0.008, 0.994 ], "z_axis": [ 0.108, 0.994, 0.005 ], "quaternion": [ 0.078, -0.002, 0.706, 0.704 ] } }, { "index": 399, "nt1": "///2/1037", "nt2": "///2/1181", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": 174.480, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 119.000, "chi2": -156.437, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.143, "C1C1_dist": 9.895, "N1N9_dist": 9.976, "C6C8_dist": 12.002, "CNNC_torsion": -35.429, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.42]", "interBase_angle": 41.066, "planarity": 0.502, "simple_Shear": 2.556, "simple_Stretch": 5.121, "simple_Buckle": -14.957, "simple_Propeller": -38.245, "bp_simpleParams": [ 2.556, 5.121, 0.581, -14.957, -38.245, 80.896 ], "bp_params": [ 4.289, 3.789, 0.581, -27.870, -30.160, 81.208 ], "frame": { "rmsd": null, "origin": [ 197.267, 229.466, 157.358 ], "x_axis": [ -0.728, -0.322, -0.605 ], "y_axis": [ -0.685, 0.368, 0.629 ], "z_axis": [ 0.020, 0.872, -0.489 ], "quaternion": [ 0.194, -0.313, 0.804, 0.467 ] } }, { "index": 400, "nt1": "///2/1038", "nt2": "///2/1077", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.325, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.609, "chi2": -173.811, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.555, "C1C1_dist": 10.224, "N1N9_dist": 8.661, "C6C8_dist": 9.711, "CNNC_torsion": -2.307, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.82],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 14.054, "planarity": 0.260, "simple_Shear": 0.022, "simple_Stretch": -0.181, "simple_Buckle": 13.409, "simple_Propeller": 4.211, "bp_simpleParams": [ 0.022, -0.181, 0.569, 13.409, 4.211, 5.390 ], "bp_params": [ 0.022, -0.181, 0.569, 13.409, 4.211, 5.357 ], "frame": { "rmsd": null, "origin": [ 195.119, 232.094, 154.073 ], "x_axis": [ -0.938, 0.063, 0.340 ], "y_axis": [ 0.344, 0.077, 0.936 ], "z_axis": [ 0.033, 0.995, -0.094 ], "quaternion": [ -0.106, 0.140, 0.726, 0.665 ] } }, { "index": 401, "nt1": "///2/1038", "nt2": "///2/1180", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -166.325, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 135.643, "chi2": -165.458, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.562, "C1C1_dist": 8.449, "N1N9_dist": 8.172, "C6C8_dist": 9.368, "CNNC_torsion": -3.149, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N3[3.21],O2(carbonyl)-N4(amino)[2.99]", "interBase_angle": 39.158, "planarity": 0.361, "simple_Shear": 6.227, "simple_Stretch": 3.446, "simple_Buckle": -24.281, "simple_Propeller": -30.720, "bp_simpleParams": [ 6.227, 3.446, 0.100, -24.281, -30.720, 53.582 ], "bp_params": [ 6.776, -2.177, 0.100, -38.998, -3.532, 50.930 ], "frame": { "rmsd": null, "origin": [ 198.397, 233.143, 155.020 ], "x_axis": [ -0.997, -0.079, -0.027 ], "y_axis": [ -0.063, 0.504, 0.861 ], "z_axis": [ -0.054, 0.860, -0.507 ], "quaternion": [ -0.008, -0.041, 0.867, 0.496 ] } }, { "index": 402, "nt1": "///2/1039", "nt2": "///2/1076", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.060, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.488, "chi2": 178.708, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.912, "C1C1_dist": 10.697, "N1N9_dist": 8.813, "C6C8_dist": 9.559, "CNNC_torsion": -7.234, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.15],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.61]", "interBase_angle": 18.090, "planarity": 0.201, "simple_Shear": 0.862, "simple_Stretch": -0.387, "simple_Buckle": 10.798, "simple_Propeller": -14.513, "bp_simpleParams": [ 0.862, -0.387, -0.499, 10.798, -14.513, -6.583 ], "bp_params": [ 0.830, -0.452, -0.499, 9.635, -15.310, -6.619 ], "frame": { "rmsd": null, "origin": [ 194.375, 234.910, 151.818 ], "x_axis": [ -0.514, 0.044, 0.857 ], "y_axis": [ 0.845, 0.198, 0.497 ], "z_axis": [ -0.148, 0.979, -0.139 ], "quaternion": [ -0.369, 0.327, 0.680, 0.542 ] } }, { "index": 403, "nt1": "///2/1040", "nt2": "///2/1075", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.619, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.244, "chi2": -157.460, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.936, "C1C1_dist": 10.674, "N1N9_dist": 8.961, "C6C8_dist": 9.896, "CNNC_torsion": 5.498, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 7.942, "planarity": 0.107, "simple_Shear": -0.163, "simple_Stretch": -0.124, "simple_Buckle": -7.577, "simple_Propeller": 2.379, "bp_simpleParams": [ -0.163, -0.124, -0.483, -7.577, 2.379, 0.009 ], "bp_params": [ -0.161, -0.126, -0.483, -7.607, 2.282, 0.009 ], "frame": { "rmsd": null, "origin": [ 191.743, 238.294, 150.814 ], "x_axis": [ -0.044, -0.381, 0.924 ], "y_axis": [ 0.969, 0.209, 0.132 ], "z_axis": [ -0.243, 0.901, 0.360 ], "quaternion": [ 0.617, -0.311, -0.473, -0.546 ] } }, { "index": 404, "nt1": "///2/1041", "nt2": "///2/1074", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.926, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.832, "chi2": -161.954, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.622, "C1C1_dist": 10.751, "N1N9_dist": 8.943, "C6C8_dist": 9.836, "CNNC_torsion": 11.622, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 8.199, "planarity": 0.180, "simple_Shear": -0.167, "simple_Stretch": -0.215, "simple_Buckle": -0.116, "simple_Propeller": 8.198, "bp_simpleParams": [ -0.167, -0.215, -0.716, -0.116, 8.198, -1.861 ], "bp_params": [ -0.165, -0.217, -0.716, -0.213, 8.196, -1.866 ], "frame": { "rmsd": null, "origin": [ 189.374, 240.617, 152.136 ], "x_axis": [ 0.461, -0.313, 0.830 ], "y_axis": [ 0.864, 0.372, -0.340 ], "z_axis": [ -0.202, 0.874, 0.442 ], "quaternion": [ 0.754, -0.402, -0.342, -0.390 ] } }, { "index": 405, "nt1": "///2/1042", "nt2": "///2/1073", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.658, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.454, "chi2": -164.217, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.085, "C1C1_dist": 10.375, "N1N9_dist": 8.910, "C6C8_dist": 10.103, "CNNC_torsion": 4.260, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.61],N1-N3(imino)[3.11]", "interBase_angle": 9.206, "planarity": 0.201, "simple_Shear": 0.211, "simple_Stretch": 0.221, "simple_Buckle": 9.159, "simple_Propeller": 0.929, "bp_simpleParams": [ 0.211, 0.221, -0.586, 9.159, 0.929, 11.309 ], "bp_params": [ 0.217, 0.215, -0.586, 9.182, 0.671, 11.273 ], "frame": { "rmsd": null, "origin": [ 188.162, 242.549, 154.779 ], "x_axis": [ 0.895, -0.196, 0.400 ], "y_axis": [ 0.438, 0.551, -0.710 ], "z_axis": [ -0.082, 0.811, 0.579 ], "quaternion": [ 0.870, -0.437, -0.139, -0.182 ] } }, { "index": 406, "nt1": "///2/1046", "nt2": "///2/1072", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.503, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 32.492, "chi2": -160.944, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.696, "C1C1_dist": 9.824, "N1N9_dist": 8.082, "C6C8_dist": 8.967, "CNNC_torsion": -5.880, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N3(imino)[2.87]", "interBase_angle": 6.639, "planarity": 0.084, "simple_Shear": -3.458, "simple_Stretch": -0.507, "simple_Buckle": -4.530, "simple_Propeller": -4.853, "bp_simpleParams": [ -3.458, -0.507, -0.182, -4.530, -4.853, -6.333 ], "bp_params": [ -3.076, -1.660, -0.182, -2.595, -6.111, -6.340 ], "frame": { "rmsd": null, "origin": [ 184.004, 244.042, 164.576 ], "x_axis": [ 0.638, 0.418, -0.647 ], "y_axis": [ -0.425, 0.891, 0.156 ], "z_axis": [ 0.642, 0.176, 0.746 ], "quaternion": [ 0.905, -0.005, 0.356, 0.233 ] } }, { "index": 407, "nt1": "///2/1047", "nt2": "///2/1071", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.974, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.645, "chi2": -173.829, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.629, "C1C1_dist": 11.426, "N1N9_dist": 9.677, "C6C8_dist": 10.634, "CNNC_torsion": 0.859, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.41],N4(amino)-O6(carbonyl)[3.66]", "interBase_angle": 2.977, "planarity": 0.119, "simple_Shear": -0.643, "simple_Stretch": 0.625, "simple_Buckle": -1.945, "simple_Propeller": -2.254, "bp_simpleParams": [ -0.643, 0.625, -0.461, -1.945, -2.254, 1.598 ], "bp_params": [ -0.685, 0.579, -0.461, -1.785, -2.383, 1.598 ], "frame": { "rmsd": null, "origin": [ 187.184, 243.946, 166.708 ], "x_axis": [ 0.126, 0.923, -0.365 ], "y_axis": [ -0.745, 0.330, 0.579 ], "z_axis": [ 0.655, 0.199, 0.729 ], "quaternion": [ 0.739, 0.129, 0.345, 0.564 ] } }, { "index": 408, "nt1": "///2/1048", "nt2": "///2/1070", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -163.218, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.720, "chi2": -171.003, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 8.290, "C1C1_dist": 10.705, "N1N9_dist": 9.222, "C6C8_dist": 9.563, "CNNC_torsion": 46.631, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.80],N3-N6(amino)[2.98]", "interBase_angle": 1.014, "planarity": 0.049, "simple_Shear": 6.860, "simple_Stretch": 2.591, "simple_Buckle": 1.011, "simple_Propeller": -0.084, "bp_simpleParams": [ 6.860, 2.591, -0.239, 1.011, -0.084, -13.466 ], "bp_params": [ 6.704, -2.970, -0.239, 0.661, -0.770, -13.466 ], "frame": { "rmsd": null, "origin": [ 190.450, 243.953, 169.024 ], "x_axis": [ -0.606, 0.735, 0.303 ], "y_axis": [ -0.487, -0.645, 0.589 ], "z_axis": [ 0.628, 0.210, 0.749 ], "quaternion": [ 0.353, 0.269, 0.231, 0.866 ] } }, { "index": 409, "nt1": "///2/1049", "nt2": "///2/1069", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 169.328, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.841, "chi2": -162.222, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 22.998, "C1C1_dist": 10.157, "N1N9_dist": 7.449, "C6C8_dist": 6.276, "CNNC_torsion": 173.386, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.00],N6(amino)-O2(carbonyl)[2.90]", "interBase_angle": 3.694, "planarity": 0.221, "simple_Shear": -3.255, "simple_Stretch": 0.746, "simple_Buckle": -0.951, "simple_Propeller": -3.570, "bp_simpleParams": [ -3.255, 0.746, -1.244, -0.951, -3.570, -100.652 ], "bp_params": [ -3.162, -1.074, -1.244, 1.064, -3.538, -100.676 ], "frame": { "rmsd": null, "origin": [ 196.965, 242.079, 169.756 ], "x_axis": [ -0.823, 0.564, 0.071 ], "y_axis": [ -0.409, -0.675, 0.615 ], "z_axis": [ 0.395, 0.477, 0.786 ], "quaternion": [ 0.268, 0.129, 0.301, 0.906 ] } }, { "index": 410, "nt1": "///2/1050", "nt2": "///2/1068", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -175.815, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.885, "chi2": -170.765, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 98.170, "C1C1_dist": 9.806, "N1N9_dist": 8.651, "C6C8_dist": 9.174, "CNNC_torsion": 38.260, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.97],N6(amino)-O2'(hydroxyl)[2.85],N6(amino)-N3[2.86]", "interBase_angle": 0.652, "planarity": 0.101, "simple_Shear": -7.244, "simple_Stretch": 2.470, "simple_Buckle": -0.572, "simple_Propeller": 0.313, "bp_simpleParams": [ -7.244, 2.470, -0.524, -0.572, 0.313, -0.374 ], "bp_params": [ -6.730, -3.645, -0.524, -0.618, -0.208, -0.374 ], "frame": { "rmsd": null, "origin": [ 192.622, 246.655, 173.590 ], "x_axis": [ -0.972, 0.054, 0.231 ], "y_axis": [ 0.026, -0.943, 0.330 ], "z_axis": [ 0.236, 0.327, 0.915 ], "quaternion": [ 0.007, 0.119, 0.168, 0.979 ] } }, { "index": 411, "nt1": "///2/1051", "nt2": "///2/1067", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.389, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.482, "chi2": -175.947, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.884, "C1C1_dist": 10.762, "N1N9_dist": 8.969, "C6C8_dist": 9.890, "CNNC_torsion": 2.177, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 1.463, "planarity": 0.083, "simple_Shear": -0.152, "simple_Stretch": -0.143, "simple_Buckle": -0.968, "simple_Propeller": -1.098, "bp_simpleParams": [ -0.152, -0.143, -0.392, -0.968, -1.098, -0.106 ], "bp_params": [ -0.150, -0.144, -0.392, -0.956, -1.108, -0.106 ], "frame": { "rmsd": null, "origin": [ 192.961, 248.723, 176.598 ], "x_axis": [ -0.493, -0.783, 0.380 ], "y_axis": [ 0.844, -0.536, -0.011 ], "z_axis": [ 0.212, 0.316, 0.925 ], "quaternion": [ -0.473, 0.172, 0.089, 0.859 ] } }, { "index": 412, "nt1": "///2/1052", "nt2": "///2/1066", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.013, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.648, "chi2": -158.800, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.635, "C1C1_dist": 10.579, "N1N9_dist": 8.890, "C6C8_dist": 9.865, "CNNC_torsion": 4.227, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.85]", "interBase_angle": 7.233, "planarity": 0.088, "simple_Shear": 0.057, "simple_Stretch": -0.083, "simple_Buckle": -0.117, "simple_Propeller": 7.232, "bp_simpleParams": [ 0.057, -0.083, 0.096, -0.117, 7.232, 1.396 ], "bp_params": [ 0.056, -0.084, 0.096, -0.039, 7.233, 1.397 ], "frame": { "rmsd": null, "origin": [ 192.032, 250.311, 179.738 ], "x_axis": [ -0.020, -0.990, 0.138 ], "y_axis": [ 0.967, -0.054, -0.249 ], "z_axis": [ 0.254, 0.129, 0.958 ], "quaternion": [ 0.686, -0.138, 0.042, -0.713 ] } }, { "index": 413, "nt1": "///2/1053", "nt2": "///2/1065", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.068, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.659, "chi2": -175.537, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.103, "C1C1_dist": 10.465, "N1N9_dist": 8.849, "C6C8_dist": 9.863, "CNNC_torsion": -2.206, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.70],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 6.191, "planarity": 0.207, "simple_Shear": 0.218, "simple_Stretch": -0.177, "simple_Buckle": 4.367, "simple_Propeller": 4.388, "bp_simpleParams": [ 0.218, -0.177, 0.642, 4.367, 4.388, 3.955 ], "bp_params": [ 0.214, -0.181, 0.642, 4.444, 4.310, 3.955 ], "frame": { "rmsd": null, "origin": [ 191.169, 249.282, 183.516 ], "x_axis": [ 0.457, -0.886, -0.082 ], "y_axis": [ 0.838, 0.460, -0.293 ], "z_axis": [ 0.297, 0.066, 0.953 ], "quaternion": [ 0.847, -0.106, 0.112, -0.509 ] } }, { "index": 414, "nt1": "///2/1054", "nt2": "///2/1064", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.063, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.247, "chi2": -160.485, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.842, "C1C1_dist": 10.585, "N1N9_dist": 8.891, "C6C8_dist": 9.850, "CNNC_torsion": 5.641, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 2.870, "planarity": 0.178, "simple_Shear": -0.170, "simple_Stretch": -0.214, "simple_Buckle": -2.524, "simple_Propeller": -1.365, "bp_simpleParams": [ -0.170, -0.214, -0.866, -2.524, -1.365, 1.480 ], "bp_params": [ -0.167, -0.216, -0.866, -2.508, -1.395, 1.480 ], "frame": { "rmsd": null, "origin": [ 190.704, 247.824, 186.866 ], "x_axis": [ 0.740, -0.457, -0.494 ], "y_axis": [ 0.562, 0.823, 0.080 ], "z_axis": [ 0.370, -0.337, 0.866 ], "quaternion": [ 0.926, 0.113, 0.233, -0.275 ] } }, { "index": 415, "nt1": "///2/1055", "nt2": "///2/1063", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cW.", "DSSR": "cW-.", "intra_chain": true, "chi1": -158.641, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.411, "chi2": 177.309, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 17.604, "C1C1_dist": 12.326, "N1N9_dist": 10.296, "C6C8_dist": 10.579, "CNNC_torsion": 42.776, "hbonds_num": 1, "hbonds_desc": "N1-N4(amino)[3.08]", "interBase_angle": 1.857, "planarity": 0.313, "simple_Shear": 4.241, "simple_Stretch": 1.724, "simple_Buckle": 1.003, "simple_Propeller": 1.562, "bp_simpleParams": [ 4.241, 1.724, -1.635, 1.003, 1.562, -25.963 ], "bp_params": [ 4.567, -0.307, -1.635, 1.586, 0.965, -25.962 ], "frame": { "rmsd": null, "origin": [ 190.159, 245.252, 190.518 ], "x_axis": [ 0.911, 0.312, -0.270 ], "y_axis": [ -0.140, 0.849, 0.509 ], "z_axis": [ 0.388, -0.426, 0.817 ], "quaternion": [ 0.946, 0.247, 0.174, 0.120 ] } }, { "index": 416, "nt1": "///2/1085", "nt2": "///2/1861", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -142.220, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 46.536, "chi2": 51.314, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 49.525, "C1C1_dist": 10.778, "N1N9_dist": 8.821, "C6C8_dist": 9.513, "CNNC_torsion": 17.378, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.94],N3-N1(imino)[2.72],N4(amino)-O6(carbonyl)[2.47]", "interBase_angle": 16.333, "planarity": 0.280, "simple_Shear": -0.125, "simple_Stretch": -0.457, "simple_Buckle": -9.645, "simple_Propeller": 13.181, "bp_simpleParams": [ -0.125, -0.457, -0.638, -9.645, 13.181, -11.154 ], "bp_params": [ -0.116, -0.460, -0.638, -9.909, 12.984, -11.185 ], "frame": { "rmsd": null, "origin": [ 184.765, 213.735, 177.245 ], "x_axis": [ 0.989, -0.019, -0.144 ], "y_axis": [ -0.145, -0.105, -0.984 ], "z_axis": [ 0.004, 0.994, -0.107 ], "quaternion": [ 0.667, -0.742, 0.055, 0.047 ] } }, { "index": 417, "nt1": "///2/1088", "nt2": "///2/1150", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -137.274, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 60.442, "chi2": -148.681, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 63.989, "C1C1_dist": 7.630, "N1N9_dist": 6.265, "C6C8_dist": 5.734, "CNNC_torsion": -9.574, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N7[2.75]", "interBase_angle": 28.058, "planarity": 0.374, "simple_Shear": -3.220, "simple_Stretch": 2.509, "simple_Buckle": -18.480, "simple_Propeller": -21.113, "bp_simpleParams": [ -3.220, 2.509, 1.032, -18.480, -21.113, -55.477 ], "bp_params": [ -0.704, 4.022, 1.032, -27.865, -3.291, -54.099 ], "frame": { "rmsd": null, "origin": [ 176.563, 201.865, 177.818 ], "x_axis": [ -0.135, 0.979, 0.152 ], "y_axis": [ 0.430, 0.196, -0.882 ], "z_axis": [ -0.893, -0.053, -0.447 ], "quaternion": [ -0.392, 0.528, 0.667, -0.351 ] } }, { "index": 418, "nt1": "///2/1089", "nt2": "///2/1160", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.758, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.099, "chi2": -157.770, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.048, "C1C1_dist": 10.844, "N1N9_dist": 9.293, "C6C8_dist": 10.376, "CNNC_torsion": 5.164, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.14]", "interBase_angle": 13.618, "planarity": 0.203, "simple_Shear": -1.000, "simple_Stretch": 0.484, "simple_Buckle": -10.880, "simple_Propeller": 8.190, "bp_simpleParams": [ -1.000, 0.484, -0.008, -10.880, 8.190, 6.519 ], "bp_params": [ -1.043, 0.383, -0.008, -11.638, 7.071, 6.498 ], "frame": { "rmsd": null, "origin": [ 184.290, 195.290, 161.886 ], "x_axis": [ -0.055, -0.662, 0.747 ], "y_axis": [ -0.176, 0.743, 0.645 ], "z_axis": [ -0.983, -0.096, -0.158 ], "quaternion": [ 0.619, 0.300, -0.699, -0.196 ] } }, { "index": 419, "nt1": "///2/1090", "nt2": "///2/1159", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.605, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.074, "chi2": -158.493, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.765, "C1C1_dist": 10.666, "N1N9_dist": 8.948, "C6C8_dist": 9.897, "CNNC_torsion": 9.642, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 10.815, "planarity": 0.136, "simple_Shear": 0.214, "simple_Stretch": -0.130, "simple_Buckle": -2.082, "simple_Propeller": 10.613, "bp_simpleParams": [ 0.214, -0.130, -0.140, -2.082, 10.613, 0.736 ], "bp_params": [ 0.212, -0.134, -0.140, -1.907, 10.646, 0.739 ], "frame": { "rmsd": null, "origin": [ 181.195, 193.879, 160.229 ], "x_axis": [ -0.100, -0.192, 0.976 ], "y_axis": [ -0.106, 0.978, 0.182 ], "z_axis": [ -0.989, -0.085, -0.118 ], "quaternion": [ 0.663, 0.101, -0.741, -0.033 ] } }, { "index": 420, "nt1": "///2/1091", "nt2": "///2/1158", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.202, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.458, "chi2": -171.020, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.332, "C1C1_dist": 10.640, "N1N9_dist": 8.941, "C6C8_dist": 9.896, "CNNC_torsion": -1.101, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 2.791, "planarity": 0.097, "simple_Shear": 0.195, "simple_Stretch": -0.135, "simple_Buckle": 2.343, "simple_Propeller": 1.516, "bp_simpleParams": [ 0.195, -0.135, 0.308, 2.343, 1.516, 1.043 ], "bp_params": [ 0.193, -0.138, 0.308, 2.365, 1.481, 1.043 ], "frame": { "rmsd": null, "origin": [ 178.311, 191.648, 160.656 ], "x_axis": [ 0.060, 0.374, 0.925 ], "y_axis": [ -0.076, 0.926, -0.369 ], "z_axis": [ -0.995, -0.048, 0.084 ], "quaternion": [ 0.719, -0.112, -0.667, 0.156 ] } }, { "index": 421, "nt1": "///2/1093", "nt2": "///2/1152", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.841, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.559, "chi2": -158.716, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.665, "C1C1_dist": 10.592, "N1N9_dist": 8.904, "C6C8_dist": 9.861, "CNNC_torsion": -13.898, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.85]", "interBase_angle": 11.265, "planarity": 0.163, "simple_Shear": 0.096, "simple_Stretch": -0.097, "simple_Buckle": 2.541, "simple_Propeller": -10.975, "bp_simpleParams": [ 0.096, -0.097, 0.427, 2.541, -10.975, 0.132 ], "bp_params": [ 0.095, -0.098, 0.427, 2.386, -11.010, 0.133 ], "frame": { "rmsd": null, "origin": [ 173.043, 188.795, 165.726 ], "x_axis": [ 0.592, 0.805, 0.032 ], "y_axis": [ -0.211, 0.194, -0.958 ], "z_axis": [ -0.778, 0.560, 0.285 ], "quaternion": [ 0.720, -0.528, -0.281, 0.353 ] } }, { "index": 422, "nt1": "///2/1094", "nt2": "///2/1151", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.287, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.137, "chi2": 172.059, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.147, "C1C1_dist": 10.852, "N1N9_dist": 8.980, "C6C8_dist": 9.873, "CNNC_torsion": -14.274, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 14.738, "planarity": 0.195, "simple_Shear": 0.195, "simple_Stretch": -0.141, "simple_Buckle": -1.779, "simple_Propeller": -14.630, "bp_simpleParams": [ 0.195, -0.141, 0.046, -1.779, -14.630, -0.420 ], "bp_params": [ 0.193, -0.143, 0.046, -1.990, -14.603, -0.424 ], "frame": { "rmsd": null, "origin": [ 170.852, 190.918, 168.144 ], "x_axis": [ 0.305, 0.766, -0.567 ], "y_axis": [ -0.520, -0.365, -0.772 ], "z_axis": [ -0.798, 0.530, 0.287 ], "quaternion": [ 0.554, -0.588, -0.105, 0.580 ] } }, { "index": 423, "nt1": "///2/1095", "nt2": "///2/1149", "bp": "C+A", "name": "~rWobble", "Saenger": "26-XXVI", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -161.451, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 36.995, "chi2": 62.462, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 26.629, "C1C1_dist": 11.695, "N1N9_dist": 9.321, "C6C8_dist": 9.971, "CNNC_torsion": 153.829, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.43],N4(amino)-N1[3.19]", "interBase_angle": 16.360, "planarity": 0.229, "simple_Shear": 0.283, "simple_Stretch": 0.105, "simple_Buckle": -9.406, "simple_Propeller": -13.385, "bp_simpleParams": [ 0.283, 0.105, 0.019, -9.406, -13.385, -168.657 ], "bp_params": [ 0.095, -0.287, 0.019, -13.087, 9.817, -168.625 ], "frame": { "rmsd": null, "origin": [ 168.255, 192.603, 171.152 ], "x_axis": [ -0.602, -0.584, -0.545 ], "y_axis": [ -0.029, -0.666, 0.745 ], "z_axis": [ -0.798, 0.465, 0.384 ], "quaternion": [ -0.170, -0.412, 0.371, 0.814 ] } }, { "index": 424, "nt1": "///2/1096", "nt2": "///2/1136", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.747, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.078, "chi2": -161.806, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.321, "C1C1_dist": 11.005, "N1N9_dist": 9.196, "C6C8_dist": 10.044, "CNNC_torsion": 4.609, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)*O4(carbonyl)[3.06],N1(imino)*N3(imino)[3.26],N2(amino)-O2(carbonyl)[3.24]", "unusual_base2base_hbonds": 2, "interBase_angle": 11.010, "planarity": 0.179, "simple_Shear": -0.394, "simple_Stretch": 0.045, "simple_Buckle": -2.338, "simple_Propeller": 10.759, "bp_simpleParams": [ -0.394, 0.045, 0.353, -2.338, 10.759, -4.236 ], "bp_params": [ -0.395, 0.031, 0.353, -2.718, 10.669, -4.253 ], "frame": { "rmsd": null, "origin": [ 160.926, 196.690, 177.300 ], "x_axis": [ 0.694, 0.549, -0.466 ], "y_axis": [ 0.166, -0.752, -0.638 ], "z_axis": [ -0.701, 0.365, -0.613 ], "quaternion": [ -0.287, 0.874, 0.205, -0.333 ] } }, { "index": 425, "nt1": "///2/1097", "nt2": "///2/1135", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.254, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.720, "chi2": -168.064, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.286, "C1C1_dist": 10.598, "N1N9_dist": 8.903, "C6C8_dist": 9.865, "CNNC_torsion": -4.133, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 4.480, "planarity": 0.144, "simple_Shear": -0.155, "simple_Stretch": -0.182, "simple_Buckle": 2.516, "simple_Propeller": 3.706, "bp_simpleParams": [ -0.155, -0.182, 0.664, 2.516, 3.706, 1.729 ], "bp_params": [ -0.153, -0.184, 0.664, 2.476, 3.733, 1.729 ], "frame": { "rmsd": null, "origin": [ 159.537, 199.845, 175.657 ], "x_axis": [ 0.731, 0.100, -0.675 ], "y_axis": [ -0.185, -0.923, -0.337 ], "z_axis": [ -0.657, 0.372, -0.656 ], "quaternion": [ -0.195, 0.910, -0.023, -0.366 ] } }, { "index": 426, "nt1": "///2/1098", "nt2": "///2/1134", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.742, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.310, "chi2": 175.639, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.335, "C1C1_dist": 10.665, "N1N9_dist": 8.939, "C6C8_dist": 9.884, "CNNC_torsion": -6.236, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 0.229, "planarity": 0.136, "simple_Shear": 0.178, "simple_Stretch": -0.163, "simple_Buckle": 0.195, "simple_Propeller": -0.119, "bp_simpleParams": [ 0.178, -0.163, 0.598, 0.195, -0.119, 1.003 ], "bp_params": [ 0.176, -0.165, 0.598, 0.188, -0.130, 1.003 ], "frame": { "rmsd": null, "origin": [ 158.656, 202.884, 173.369 ], "x_axis": [ 0.489, -0.486, -0.724 ], "y_axis": [ -0.626, -0.774, 0.096 ], "z_axis": [ -0.607, 0.407, -0.683 ], "quaternion": [ -0.090, 0.858, -0.324, -0.388 ] } }, { "index": 427, "nt1": "///2/1099", "nt2": "///2/1133", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.773, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 37.325, "chi2": -175.975, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.544, "C1C1_dist": 13.328, "N1N9_dist": 11.285, "C6C8_dist": 11.669, "CNNC_torsion": -18.909, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)*N1[3.17]", "interBase_angle": 22.337, "planarity": 0.256, "simple_Shear": -1.621, "simple_Stretch": 2.095, "simple_Buckle": -11.434, "simple_Propeller": -19.189, "bp_simpleParams": [ -1.621, 2.095, -0.196, -11.434, -19.189, -17.315 ], "bp_params": [ -1.935, 1.810, -0.196, -8.169, -20.790, -17.557 ], "frame": { "rmsd": null, "origin": [ 158.586, 206.332, 170.702 ], "x_axis": [ 0.221, -0.662, -0.717 ], "y_axis": [ -0.892, -0.433, 0.125 ], "z_axis": [ -0.393, 0.612, -0.686 ], "quaternion": [ -0.159, 0.765, -0.508, -0.363 ] } }, { "index": 428, "nt1": "///2/1100", "nt2": "///2/1132", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.528, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.201, "chi2": -155.681, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.903, "C1C1_dist": 13.340, "N1N9_dist": 11.150, "C6C8_dist": 11.418, "CNNC_torsion": 4.721, "hbonds_num": 1, "hbonds_desc": "N1-N4(amino)[3.67]", "interBase_angle": 5.429, "planarity": 0.093, "simple_Shear": 2.210, "simple_Stretch": 1.999, "simple_Buckle": -2.028, "simple_Propeller": -5.036, "bp_simpleParams": [ 2.210, 1.999, -0.566, -2.028, -5.036, -27.827 ], "bp_params": [ 2.610, 1.438, -0.566, -3.129, -4.437, -27.837 ], "frame": { "rmsd": null, "origin": [ 159.658, 209.517, 167.783 ], "x_axis": [ -0.245, -0.903, -0.353 ], "y_axis": [ -0.900, 0.076, 0.430 ], "z_axis": [ -0.362, 0.423, -0.831 ], "quaternion": [ -0.003, -0.614, 0.733, 0.291 ] } }, { "index": 429, "nt1": "///2/1101", "nt2": "///2/1131", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.842, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.185, "chi2": -168.150, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.197, "C1C1_dist": 11.445, "N1N9_dist": 9.835, "C6C8_dist": 10.873, "CNNC_torsion": -5.639, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.70]", "interBase_angle": 12.478, "planarity": 0.146, "simple_Shear": 1.075, "simple_Stretch": 0.942, "simple_Buckle": 8.632, "simple_Propeller": -9.011, "bp_simpleParams": [ 1.075, 0.942, -0.480, 8.632, -9.011, 5.111 ], "bp_params": [ 1.163, 0.830, -0.480, 7.692, -9.826, 5.118 ], "frame": { "rmsd": null, "origin": [ 158.923, 207.909, 163.963 ], "x_axis": [ -0.632, -0.770, -0.088 ], "y_axis": [ -0.695, 0.513, 0.504 ], "z_axis": [ -0.343, 0.380, -0.859 ], "quaternion": [ -0.073, -0.422, 0.867, 0.255 ] } }, { "index": 430, "nt1": "///2/1103", "nt2": "///2/1129", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -147.647, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.234, "chi2": -131.250, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.300, "C1C1_dist": 10.405, "N1N9_dist": 8.721, "C6C8_dist": 9.672, "CNNC_torsion": 8.698, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.96],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 9.012, "planarity": 0.390, "simple_Shear": 0.139, "simple_Stretch": -0.417, "simple_Buckle": -8.826, "simple_Propeller": -1.820, "bp_simpleParams": [ 0.139, -0.417, -1.330, -8.826, -1.820, 1.798 ], "bp_params": [ 0.135, -0.419, -1.330, -8.844, -1.733, 1.793 ], "frame": { "rmsd": null, "origin": [ 156.143, 206.050, 157.669 ], "x_axis": [ -0.634, -0.038, 0.772 ], "y_axis": [ -0.188, 0.977, -0.106 ], "z_axis": [ -0.750, -0.212, -0.627 ], "quaternion": [ -0.423, -0.063, 0.900, -0.088 ] } }, { "index": 431, "nt1": "///2/1104", "nt2": "///2/1128", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.306, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.194, "chi2": -157.311, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.345, "C1C1_dist": 10.591, "N1N9_dist": 8.929, "C6C8_dist": 9.904, "CNNC_torsion": -4.899, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 8.372, "planarity": 0.095, "simple_Shear": -0.203, "simple_Stretch": -0.113, "simple_Buckle": -5.023, "simple_Propeller": -6.698, "bp_simpleParams": [ -0.203, -0.113, -0.054, -5.023, -6.698, 1.743 ], "bp_params": [ -0.201, -0.116, -0.054, -4.923, -6.771, 1.744 ], "frame": { "rmsd": null, "origin": [ 153.079, 205.175, 156.690 ], "x_axis": [ -0.173, 0.470, 0.866 ], "y_axis": [ 0.203, 0.877, -0.436 ], "z_axis": [ -0.964, 0.100, -0.247 ], "quaternion": [ 0.604, -0.222, -0.758, 0.111 ] } }, { "index": 432, "nt1": "///2/1105", "nt2": "///2/1127", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.780, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.753, "chi2": -160.180, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.802, "C1C1_dist": 10.628, "N1N9_dist": 8.923, "C6C8_dist": 9.873, "CNNC_torsion": 5.311, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 3.005, "planarity": 0.138, "simple_Shear": -0.161, "simple_Stretch": -0.179, "simple_Buckle": -2.976, "simple_Propeller": -0.416, "bp_simpleParams": [ -0.161, -0.179, -0.700, -2.976, -0.416, 0.761 ], "bp_params": [ -0.159, -0.181, -0.700, -2.971, -0.451, 0.761 ], "frame": { "rmsd": null, "origin": [ 149.441, 204.293, 156.870 ], "x_axis": [ 0.025, 0.830, 0.558 ], "y_axis": [ 0.251, 0.535, -0.807 ], "z_axis": [ -0.968, 0.160, -0.195 ], "quaternion": [ 0.584, -0.414, -0.653, 0.248 ] } }, { "index": 433, "nt1": "///2/1106", "nt2": "///2/1126", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.492, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.862, "chi2": -178.396, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.480, "C1C1_dist": 10.668, "N1N9_dist": 8.910, "C6C8_dist": 9.778, "CNNC_torsion": 1.447, "hbonds_num": 4, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.96],O2(carbonyl)-N2(amino)[3.37],N3*O6(carbonyl)[2.87],N4(amino)-O6(carbonyl)[3.39]", "unusual_base2base_hbonds": 1, "interBase_angle": 1.134, "planarity": 0.028, "simple_Shear": 1.972, "simple_Stretch": -0.051, "simple_Buckle": 0.754, "simple_Propeller": 0.847, "bp_simpleParams": [ 1.972, -0.051, -0.150, 0.754, 0.847, -1.451 ], "bp_params": [ 1.926, -0.429, -0.150, 0.903, 0.686, -1.451 ], "frame": { "rmsd": null, "origin": [ 145.842, 204.527, 157.729 ], "x_axis": [ 0.227, 0.968, -0.110 ], "y_axis": [ 0.188, -0.154, -0.970 ], "z_axis": [ -0.956, 0.200, -0.217 ], "quaternion": [ -0.463, 0.632, 0.457, -0.421 ] } }, { "index": 434, "nt1": "///2/1107", "nt2": "///2/1125", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.535, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.616, "chi2": -157.154, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.609, "C1C1_dist": 10.597, "N1N9_dist": 8.927, "C6C8_dist": 9.897, "CNNC_torsion": -1.494, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 7.276, "planarity": 0.103, "simple_Shear": -0.192, "simple_Stretch": -0.133, "simple_Buckle": -4.333, "simple_Propeller": -5.845, "bp_simpleParams": [ -0.192, -0.133, -0.398, -4.333, -5.845, 1.789 ], "bp_params": [ -0.191, -0.136, -0.398, -4.251, -5.905, 1.790 ], "frame": { "rmsd": null, "origin": [ 142.153, 205.727, 159.421 ], "x_axis": [ 0.596, 0.754, -0.277 ], "y_axis": [ 0.056, -0.383, -0.922 ], "z_axis": [ -0.801, 0.534, -0.270 ], "quaternion": [ -0.485, 0.750, 0.270, -0.359 ] } }, { "index": 435, "nt1": "///2/1108", "nt2": "///2/1124", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.073, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.838, "chi2": -168.282, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.167, "C1C1_dist": 10.962, "N1N9_dist": 9.444, "C6C8_dist": 10.611, "CNNC_torsion": -1.577, "hbonds_num": 2, "hbonds_desc": "N2(amino)-O2(carbonyl)[2.97],N2(amino)-N3[3.30]", "interBase_angle": 8.562, "planarity": 0.093, "simple_Shear": 0.526, "simple_Stretch": 0.660, "simple_Buckle": -7.021, "simple_Propeller": -4.901, "bp_simpleParams": [ 0.526, 0.660, -0.290, -7.021, -4.901, 11.018 ], "bp_params": [ 0.565, 0.628, -0.290, -7.302, -4.471, 11.004 ], "frame": { "rmsd": null, "origin": [ 139.919, 209.016, 159.190 ], "x_axis": [ 0.534, 0.389, -0.751 ], "y_axis": [ -0.296, -0.746, -0.596 ], "z_axis": [ -0.792, 0.541, -0.283 ], "quaternion": [ -0.355, 0.800, 0.029, -0.482 ] } }, { "index": 436, "nt1": "///2/1109", "nt2": "///2/1124", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -164.177, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.625, "chi2": -168.282, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 82.860, "C1C1_dist": 9.544, "N1N9_dist": 8.017, "C6C8_dist": 8.335, "CNNC_torsion": -116.728, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O2(carbonyl)[2.60]", "interBase_angle": 17.447, "planarity": 0.394, "simple_Shear": -7.327, "simple_Stretch": 1.310, "simple_Buckle": 12.889, "simple_Propeller": 11.759, "bp_simpleParams": [ -7.327, 1.310, 1.977, 12.889, 11.759, -17.099 ], "bp_params": [ -5.958, -4.461, 1.977, 0.210, 17.446, -17.296 ], "frame": { "rmsd": null, "origin": [ 137.354, 209.935, 162.479 ], "x_axis": [ 0.737, 0.431, -0.520 ], "y_axis": [ -0.198, -0.597, -0.777 ], "z_axis": [ -0.646, 0.676, -0.355 ], "quaternion": [ -0.443, 0.820, 0.071, -0.355 ] } }, { "index": 437, "nt1": "///2/1110", "nt2": "///2/1123", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.524, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.360, "chi2": -171.530, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.775, "C1C1_dist": 9.957, "N1N9_dist": 8.499, "C6C8_dist": 9.655, "CNNC_torsion": 3.503, "hbonds_num": 3, "hbonds_desc": "N1(imino)-O2(carbonyl)[2.99],N1(imino)-N3[3.11],N2(amino)-O2(carbonyl)[2.88]", "interBase_angle": 18.737, "planarity": 0.345, "simple_Shear": -1.527, "simple_Stretch": -0.245, "simple_Buckle": 9.899, "simple_Propeller": 15.908, "bp_simpleParams": [ -1.527, -0.245, 1.234, 9.899, 15.908, 15.714 ], "bp_params": [ -1.476, -0.461, 1.234, 7.490, 17.175, 15.858 ], "frame": { "rmsd": null, "origin": [ 137.558, 213.294, 159.962 ], "x_axis": [ 0.384, -0.215, -0.898 ], "y_axis": [ -0.674, -0.730, -0.113 ], "z_axis": [ -0.631, 0.649, -0.425 ], "quaternion": [ -0.239, 0.797, -0.279, -0.480 ] } }, { "index": 438, "nt1": "///2/1111", "nt2": "///2/1122", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.629, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.246, "chi2": -171.020, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.513, "C1C1_dist": 10.617, "N1N9_dist": 8.875, "C6C8_dist": 9.833, "CNNC_torsion": 7.729, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.83],O4(carbonyl)-N6(amino)[2.98]", "interBase_angle": 6.962, "planarity": 0.112, "simple_Shear": -0.080, "simple_Stretch": -0.116, "simple_Buckle": 0.463, "simple_Propeller": 6.947, "bp_simpleParams": [ -0.080, -0.116, -0.340, 0.463, 6.947, 0.601 ], "bp_params": [ -0.078, -0.117, -0.340, 0.374, 6.952, 0.602 ], "frame": { "rmsd": null, "origin": [ 137.459, 217.430, 158.642 ], "x_axis": [ -0.049, -0.706, -0.706 ], "y_axis": [ -0.904, -0.269, 0.331 ], "z_axis": [ -0.424, 0.655, -0.626 ], "quaternion": [ -0.119, 0.679, -0.593, -0.416 ] } }, { "index": 439, "nt1": "///2/1112", "nt2": "///2/1121", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.972, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.388, "chi2": 177.422, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 27.836, "C1C1_dist": 10.438, "N1N9_dist": 8.692, "C6C8_dist": 9.357, "CNNC_torsion": 6.602, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)*O6(carbonyl)[2.26],O2(carbonyl)-N1(imino)[2.99],N3(imino)-O6(carbonyl)[2.81]", "unusual_base2base_hbonds": 1, "interBase_angle": 2.706, "planarity": 0.112, "simple_Shear": 4.071, "simple_Stretch": 0.235, "simple_Buckle": -0.633, "simple_Propeller": -2.631, "bp_simpleParams": [ 4.071, 0.235, -0.467, -0.633, -2.631, -8.674 ], "bp_params": [ 3.819, -1.431, -0.467, -1.642, -2.151, -8.675 ], "frame": { "rmsd": null, "origin": [ 137.740, 219.689, 155.692 ], "x_axis": [ -0.677, -0.729, -0.098 ], "y_axis": [ -0.601, 0.471, 0.645 ], "z_axis": [ -0.424, 0.496, -0.758 ], "quaternion": [ -0.096, -0.390, 0.852, 0.335 ] } }, { "index": 440, "nt1": "///2/1113", "nt2": "///2/1120", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.969, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.275, "chi2": -162.566, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.668, "C1C1_dist": 10.567, "N1N9_dist": 8.870, "C6C8_dist": 9.838, "CNNC_torsion": -3.109, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.85]", "interBase_angle": 10.575, "planarity": 0.127, "simple_Shear": 0.044, "simple_Stretch": -0.100, "simple_Buckle": -7.346, "simple_Propeller": -7.607, "bp_simpleParams": [ 0.044, -0.100, -0.468, -7.346, -7.607, 1.711 ], "bp_params": [ 0.043, -0.100, -0.468, -7.434, -7.521, 1.711 ], "frame": { "rmsd": null, "origin": [ 137.158, 219.585, 151.967 ], "x_axis": [ -0.560, -0.698, 0.446 ], "y_axis": [ -0.512, 0.715, 0.475 ], "z_axis": [ -0.651, 0.038, -0.758 ], "quaternion": [ -0.315, -0.347, 0.871, 0.147 ] } }, { "index": 441, "nt1": "///2/1115", "nt2": "///z/136", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": false, "chi1": -125.504, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 52.280, "chi2": -73.288, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 62.841, "C1C1_dist": 10.151, "N1N9_dist": 8.584, "C6C8_dist": 9.621, "CNNC_torsion": 4.321, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[3.01]", "interBase_angle": 9.250, "planarity": 0.306, "simple_Shear": -1.002, "simple_Stretch": -0.367, "simple_Buckle": 0.321, "simple_Propeller": -9.245, "bp_simpleParams": [ -1.002, -0.367, -1.375, 0.321, -9.245, 6.124 ], "bp_params": [ -0.957, -0.472, -1.375, 1.308, -9.157, 6.143 ], "frame": { "rmsd": null, "origin": [ 120.877, 227.287, 157.935 ], "x_axis": [ 0.261, 0.953, -0.155 ], "y_axis": [ 0.644, -0.291, -0.708 ], "z_axis": [ -0.720, 0.085, -0.689 ], "quaternion": [ -0.265, 0.748, 0.533, -0.292 ] } }, { "index": 442, "nt1": "///2/1116", "nt2": "///z/268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": false, "chi1": -166.071, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.182, "chi2": -170.928, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.028, "C1C1_dist": 10.563, "N1N9_dist": 8.934, "C6C8_dist": 9.935, "CNNC_torsion": -1.889, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 4.512, "planarity": 0.049, "simple_Shear": 0.206, "simple_Stretch": -0.092, "simple_Buckle": 3.929, "simple_Propeller": -2.218, "bp_simpleParams": [ 0.206, -0.092, -0.139, 3.929, -2.218, 2.673 ], "bp_params": [ 0.204, -0.095, -0.139, 3.894, -2.280, 2.672 ], "frame": { "rmsd": null, "origin": [ 126.960, 221.345, 144.981 ], "x_axis": [ 0.430, 0.809, 0.401 ], "y_axis": [ -0.477, -0.173, 0.861 ], "z_axis": [ 0.766, -0.561, 0.312 ], "quaternion": [ 0.626, 0.568, 0.146, 0.514 ] } }, { "index": 443, "nt1": "///2/1117", "nt2": "///z/267", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": false, "chi1": -161.417, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.994, "chi2": 179.707, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.478, "C1C1_dist": 10.768, "N1N9_dist": 8.977, "C6C8_dist": 9.899, "CNNC_torsion": 1.797, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 3.016, "planarity": 0.087, "simple_Shear": 0.196, "simple_Stretch": -0.135, "simple_Buckle": 2.696, "simple_Propeller": -1.353, "bp_simpleParams": [ 0.196, -0.135, -0.450, 2.696, -1.353, 0.124 ], "bp_params": [ 0.194, -0.138, -0.450, 2.676, -1.391, 0.124 ], "frame": { "rmsd": null, "origin": [ 130.455, 220.146, 144.395 ], "x_axis": [ 0.088, 0.608, 0.789 ], "y_axis": [ -0.600, -0.600, 0.529 ], "z_axis": [ 0.795, -0.520, 0.312 ], "quaternion": [ 0.447, 0.587, 0.003, 0.675 ] } }, { "index": 444, "nt1": "///2/1118", "nt2": "///z/266", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": false, "chi1": -170.053, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.659, "chi2": -149.067, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.299, "C1C1_dist": 10.829, "N1N9_dist": 8.970, "C6C8_dist": 9.834, "CNNC_torsion": 15.830, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.83],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 17.150, "planarity": 0.232, "simple_Shear": 0.067, "simple_Stretch": -0.164, "simple_Buckle": 10.025, "simple_Propeller": 13.914, "bp_simpleParams": [ 0.067, -0.164, -0.581, 10.025, 13.914, -3.050 ], "bp_params": [ 0.065, -0.165, -0.581, 10.113, 13.850, -3.061 ], "frame": { "rmsd": null, "origin": [ 133.945, 219.697, 144.782 ], "x_axis": [ -0.423, 0.466, 0.777 ], "y_axis": [ -0.502, -0.835, 0.227 ], "z_axis": [ 0.755, -0.293, 0.587 ], "quaternion": [ 0.287, 0.454, -0.020, 0.843 ] } }, { "index": 445, "nt1": "///2/1137", "nt2": "///2/1148", "bp": "U+A", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -156.510, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.770, "chi2": 49.104, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 36.794, "C1C1_dist": 11.858, "N1N9_dist": 9.489, "C6C8_dist": 10.168, "CNNC_torsion": -179.911, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N1[3.19]", "interBase_angle": 0.666, "planarity": 0.044, "simple_Shear": 0.311, "simple_Stretch": 0.268, "simple_Buckle": -0.622, "simple_Propeller": 0.239, "bp_simpleParams": [ 0.311, 0.268, -0.193, -0.622, 0.239, 169.533 ], "bp_params": [ -0.258, 0.320, -0.193, -0.259, -0.613, 169.533 ], "frame": { "rmsd": null, "origin": [ 163.908, 194.660, 177.874 ], "x_axis": [ 0.389, -0.250, -0.887 ], "y_axis": [ 0.374, 0.922, -0.096 ], "z_axis": [ 0.842, -0.295, 0.452 ], "quaternion": [ 0.831, 0.060, 0.520, -0.188 ] } }, { "index": 446, "nt1": "///2/1140", "nt2": "///2/1147", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.773, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.212, "chi2": -161.492, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.509, "C1C1_dist": 10.657, "N1N9_dist": 8.877, "C6C8_dist": 9.756, "CNNC_torsion": 16.083, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 7.929, "planarity": 0.227, "simple_Shear": -0.111, "simple_Stretch": -0.317, "simple_Buckle": -4.216, "simple_Propeller": 6.716, "bp_simpleParams": [ -0.111, -0.317, -1.065, -4.216, 6.716, -2.794 ], "bp_params": [ -0.108, -0.318, -1.065, -4.266, 6.684, -2.797 ], "frame": { "rmsd": null, "origin": [ 170.524, 193.931, 179.994 ], "x_axis": [ -0.579, 0.151, 0.801 ], "y_axis": [ -0.164, -0.984, 0.067 ], "z_axis": [ 0.798, -0.093, 0.595 ], "quaternion": [ 0.089, 0.450, -0.007, 0.889 ] } }, { "index": 447, "nt1": "///2/1141", "nt2": "///2/1146", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.771, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.965, "chi2": -162.711, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.659, "C1C1_dist": 10.688, "N1N9_dist": 8.944, "C6C8_dist": 9.866, "CNNC_torsion": 13.227, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 10.655, "planarity": 0.186, "simple_Shear": -0.150, "simple_Stretch": -0.183, "simple_Buckle": 0.778, "simple_Propeller": 10.627, "bp_simpleParams": [ -0.150, -0.183, -0.625, 0.778, 10.627, -1.141 ], "bp_params": [ -0.148, -0.185, -0.625, 0.665, 10.635, -1.146 ], "frame": { "rmsd": null, "origin": [ 173.136, 195.107, 182.944 ], "x_axis": [ -0.637, -0.291, 0.714 ], "y_axis": [ 0.109, -0.951, -0.290 ], "z_axis": [ 0.763, -0.106, 0.637 ], "quaternion": [ -0.111, 0.411, -0.110, 0.898 ] } }, { "index": 448, "nt1": "///2/1142", "nt2": "///2/1145", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -154.343, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.810, "chi2": -157.635, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 23.540, "C1C1_dist": 10.130, "N1N9_dist": 8.859, "C6C8_dist": 8.832, "CNNC_torsion": -131.714, "hbonds_num": 3, "hbonds_desc": "N1(imino)-OP2[3.29],N2(amino)-OP2[2.60],N2(amino)-N7[3.00]", "interBase_angle": 31.171, "planarity": 0.471, "simple_Shear": 7.949, "simple_Stretch": 4.604, "simple_Buckle": 18.585, "simple_Propeller": 25.024, "bp_simpleParams": [ 7.949, 4.604, 0.735, 18.585, 25.024, -38.547 ], "bp_params": [ 7.796, -4.859, 0.735, 30.836, -4.559, -37.286 ], "frame": { "rmsd": null, "origin": [ 176.847, 198.137, 183.725 ], "x_axis": [ -0.382, -0.921, 0.075 ], "y_axis": [ 0.549, -0.292, -0.783 ], "z_axis": [ 0.743, -0.258, 0.617 ], "quaternion": [ -0.486, 0.270, -0.344, 0.757 ] } }, { "index": 449, "nt1": "///2/1143", "nt2": "///2/1198", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "t.S", "DSSR": "t.+m", "intra_chain": true, "chi1": -158.827, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.675, "chi2": -174.717, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 79.369, "C1C1_dist": 8.519, "N1N9_dist": 7.803, "C6C8_dist": 9.708, "CNNC_torsion": -143.575, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.61],N3-N2(amino)[2.81]", "interBase_angle": 60.112, "planarity": 0.658, "simple_Shear": 6.631, "simple_Stretch": 2.928, "simple_Buckle": -49.038, "simple_Propeller": 34.767, "bp_simpleParams": [ 6.631, 2.928, 0.890, -49.038, 34.767, 154.559 ], "bp_params": [ 2.361, 6.854, 0.890, -58.621, -13.306, 151.115 ], "frame": { "rmsd": null, "origin": [ 186.578, 199.037, 188.047 ], "x_axis": [ 0.449, 0.793, -0.411 ], "y_axis": [ -0.393, -0.238, -0.888 ], "z_axis": [ -0.802, 0.561, 0.205 ], "quaternion": [ 0.595, -0.609, -0.164, 0.498 ] } }, { "index": 450, "nt1": "///2/1146", "nt2": "///2/1150", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -162.711, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 103.622, "chi2": -148.681, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 50.632, "C1C1_dist": 8.475, "N1N9_dist": 8.299, "C6C8_dist": 10.386, "CNNC_torsion": 168.655, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.22],O2'(hydroxyl)-N1[2.40]", "interBase_angle": 23.809, "planarity": 0.309, "simple_Shear": 6.593, "simple_Stretch": 4.584, "simple_Buckle": 22.580, "simple_Propeller": -7.551, "bp_simpleParams": [ 6.593, 4.584, 1.177, 22.580, -7.551, -125.513 ], "bp_params": [ -1.791, -7.828, 1.177, -21.749, -9.688, -124.828 ], "frame": { "rmsd": null, "origin": [ 174.726, 198.404, 181.522 ], "x_axis": [ -0.285, 0.693, 0.663 ], "y_axis": [ 0.282, 0.721, -0.633 ], "z_axis": [ -0.916, 0.007, -0.401 ], "quaternion": [ 0.509, -0.314, -0.776, 0.202 ] } }, { "index": 451, "nt1": "///2/1166", "nt2": "///2/1193", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.886, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.937, "chi2": -159.628, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.908, "C1C1_dist": 10.614, "N1N9_dist": 8.924, "C6C8_dist": 9.886, "CNNC_torsion": -3.922, "hbonds_num": 4, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.39],O6(carbonyl)*O4(carbonyl)[3.20],N1(imino)-O2(carbonyl)[3.26],N2(amino)-O2(carbonyl)[2.86]", "unusual_base2base_hbonds": 1, "interBase_angle": 11.865, "planarity": 0.135, "simple_Shear": -0.884, "simple_Stretch": -0.044, "simple_Buckle": -10.878, "simple_Propeller": -4.738, "bp_simpleParams": [ -0.884, -0.044, -0.148, -10.878, -4.738, 0.978 ], "bp_params": [ -0.878, -0.116, -0.148, -10.460, -5.601, 0.975 ], "frame": { "rmsd": null, "origin": [ 207.346, 200.529, 185.958 ], "x_axis": [ 0.795, -0.430, -0.428 ], "y_axis": [ -0.603, -0.485, -0.633 ], "z_axis": [ 0.065, 0.762, -0.645 ], "quaternion": [ -0.408, 0.855, -0.302, -0.106 ] } }, { "index": 452, "nt1": "///2/1167", "nt2": "///2/1192", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.510, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.897, "chi2": -162.606, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 71.289, "C1C1_dist": 10.808, "N1N9_dist": 9.331, "C6C8_dist": 10.436, "CNNC_torsion": 0.533, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.70],N1(imino)-O2(carbonyl)[3.24]", "interBase_angle": 10.535, "planarity": 0.114, "simple_Shear": -2.207, "simple_Stretch": 0.732, "simple_Buckle": -10.535, "simple_Propeller": 0.034, "bp_simpleParams": [ -2.207, 0.732, -0.481, -10.535, 0.034, 9.082 ], "bp_params": [ -2.313, 0.238, -0.481, -10.294, -2.243, 9.047 ], "frame": { "rmsd": null, "origin": [ 209.230, 203.644, 184.298 ], "x_axis": [ 0.438, -0.621, -0.650 ], "y_axis": [ -0.897, -0.254, -0.362 ], "z_axis": [ 0.060, 0.742, -0.668 ], "quaternion": [ -0.359, 0.768, -0.494, -0.192 ] } }, { "index": 453, "nt1": "///2/1168", "nt2": "///2/1191", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.137, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.973, "chi2": -177.850, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.630, "C1C1_dist": 10.789, "N1N9_dist": 8.961, "C6C8_dist": 9.858, "CNNC_torsion": 6.716, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 4.637, "planarity": 0.152, "simple_Shear": -0.130, "simple_Stretch": -0.178, "simple_Buckle": 2.641, "simple_Propeller": 3.811, "bp_simpleParams": [ -0.130, -0.178, -0.573, 2.641, 3.811, -1.229 ], "bp_params": [ -0.128, -0.179, -0.573, 2.610, 3.832, -1.229 ], "frame": { "rmsd": null, "origin": [ 211.509, 205.655, 182.226 ], "x_axis": [ -0.150, -0.711, -0.687 ], "y_axis": [ -0.979, 0.203, 0.004 ], "z_axis": [ 0.136, 0.673, -0.726 ], "quaternion": [ 0.286, -0.586, 0.721, 0.235 ] } }, { "index": 454, "nt1": "///2/1169", "nt2": "///2/1190", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -159.063, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 96.797, "chi2": -179.748, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 8.735, "C1C1_dist": 9.705, "N1N9_dist": 8.513, "C6C8_dist": 8.966, "CNNC_torsion": -90.531, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.11],N2(amino)-N7[2.95],N3-N6(amino)[2.93]", "interBase_angle": 11.515, "planarity": 0.187, "simple_Shear": 7.409, "simple_Stretch": 2.512, "simple_Buckle": 11.376, "simple_Propeller": 1.783, "bp_simpleParams": [ 7.409, 2.512, -0.336, 11.376, 1.783, -2.835 ], "bp_params": [ 6.769, -3.922, -0.336, 8.828, -7.393, -2.832 ], "frame": { "rmsd": null, "origin": [ 212.306, 207.119, 179.087 ], "x_axis": [ -0.947, -0.137, -0.289 ], "y_axis": [ -0.285, 0.775, 0.565 ], "z_axis": [ 0.147, 0.617, -0.773 ], "quaternion": [ 0.117, -0.113, 0.935, 0.316 ] } }, { "index": 455, "nt1": "///2/1170", "nt2": "///2/1189", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -122.259, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 11.960, "chi2": -175.795, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 17.148, "C1C1_dist": 11.050, "N1N9_dist": 8.224, "C6C8_dist": 6.391, "CNNC_torsion": -101.891, "hbonds_num": 3, "hbonds_desc": "N7-N6(amino)[3.17],N6(amino)-OP2[3.09],N6(amino)-N7[2.60]", "interBase_angle": 21.086, "planarity": 0.261, "simple_Shear": -7.705, "simple_Stretch": 0.419, "simple_Buckle": -16.803, "simple_Propeller": -12.740, "bp_simpleParams": [ -7.705, 0.419, 0.600, -16.803, -12.740, -168.138 ], "bp_params": [ -5.814, 5.073, 0.600, -21.084, 0.334, -167.936 ], "frame": { "rmsd": null, "origin": [ 212.071, 207.839, 175.430 ], "x_axis": [ 0.177, 0.795, 0.581 ], "y_axis": [ -0.959, 0.271, -0.078 ], "z_axis": [ -0.220, -0.543, 0.810 ], "quaternion": [ 0.751, 0.155, -0.266, 0.584 ] } }, { "index": 456, "nt1": "///2/1171", "nt2": "///2/1172", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -116.096, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 147.157, "chi2": 178.289, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.012, "C1C1_dist": 6.940, "N1N9_dist": 7.305, "C6C8_dist": 7.214, "CNNC_torsion": 25.254, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-OP2[3.00],N2(amino)-O4(carbonyl)[3.77]", "interBase_angle": 16.434, "planarity": 0.227, "simple_Shear": 0.263, "simple_Stretch": 8.983, "simple_Buckle": -15.795, "simple_Propeller": 4.535, "bp_simpleParams": [ 0.263, 8.983, 0.138, -15.795, 4.535, 21.150 ], "bp_params": [ 8.867, 1.467, 0.138, 1.392, 16.374, 21.361 ], "frame": { "rmsd": null, "origin": [ 207.347, 208.225, 170.297 ], "x_axis": [ -0.901, -0.385, -0.198 ], "y_axis": [ -0.433, 0.798, 0.420 ], "z_axis": [ -0.004, 0.464, -0.886 ], "quaternion": [ 0.051, -0.216, 0.947, 0.233 ] } }, { "index": 457, "nt1": "///2/1172", "nt2": "///2/1188", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 178.289, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 28.948, "chi2": -173.490, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 23.440, "C1C1_dist": 9.397, "N1N9_dist": 6.872, "C6C8_dist": 5.937, "CNNC_torsion": -174.028, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.96],N3(imino)-N7[2.85]", "interBase_angle": 5.765, "planarity": 0.315, "simple_Shear": 4.452, "simple_Stretch": 1.070, "simple_Buckle": 5.125, "simple_Propeller": -2.640, "bp_simpleParams": [ 4.452, 1.070, 1.313, 5.125, -2.640, -99.436 ], "bp_params": [ 3.921, -2.365, 1.313, 1.797, -5.478, -99.494 ], "frame": { "rmsd": null, "origin": [ 213.780, 209.458, 172.005 ], "x_axis": [ -0.971, 0.229, 0.061 ], "y_axis": [ 0.225, 0.804, 0.550 ], "z_axis": [ 0.077, 0.548, -0.833 ], "quaternion": [ 0.004, 0.119, 0.950, 0.289 ] } }, { "index": 458, "nt1": "///2/1173", "nt2": "///2/1187", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -157.991, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.066, "chi2": -153.235, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 97.091, "C1C1_dist": 10.385, "N1N9_dist": 9.206, "C6C8_dist": 9.601, "CNNC_torsion": 104.654, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.57],N6(amino)-O2'(hydroxyl)[3.59]", "interBase_angle": 11.229, "planarity": 0.269, "simple_Shear": -7.619, "simple_Stretch": 3.356, "simple_Buckle": 1.070, "simple_Propeller": -11.177, "bp_simpleParams": [ -7.619, 3.356, -1.145, 1.070, -11.177, -4.926 ], "bp_params": [ -7.396, -3.823, -1.145, 9.370, -6.188, -4.917 ], "frame": { "rmsd": null, "origin": [ 209.429, 211.338, 168.684 ], "x_axis": [ -0.991, 0.062, -0.119 ], "y_axis": [ 0.014, 0.931, 0.366 ], "z_axis": [ 0.133, 0.361, -0.923 ], "quaternion": [ 0.064, 0.019, 0.980, 0.185 ] } }, { "index": 459, "nt1": "///2/1175", "nt2": "///2/1186", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.174, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.177, "chi2": -161.643, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.779, "C1C1_dist": 10.468, "N1N9_dist": 8.930, "C6C8_dist": 9.989, "CNNC_torsion": 5.570, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.25],N1(imino)-O2(carbonyl)[2.92],N2(amino)-O2(carbonyl)[3.11]", "interBase_angle": 7.475, "planarity": 0.103, "simple_Shear": -1.806, "simple_Stretch": 0.163, "simple_Buckle": -3.358, "simple_Propeller": 6.679, "bp_simpleParams": [ -1.806, 0.163, -0.099, -3.358, 6.679, 5.820 ], "bp_params": [ -1.806, -0.159, -0.099, -4.485, 5.980, 5.823 ], "frame": { "rmsd": null, "origin": [ 209.769, 212.034, 162.567 ], "x_axis": [ -0.285, 0.702, 0.652 ], "y_axis": [ 0.950, 0.297, 0.095 ], "z_axis": [ -0.127, 0.647, -0.752 ], "quaternion": [ -0.255, 0.541, 0.764, 0.243 ] } }, { "index": 460, "nt1": "///2/1176", "nt2": "///2/1185", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.908, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.973, "chi2": -163.819, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.149, "C1C1_dist": 10.667, "N1N9_dist": 8.953, "C6C8_dist": 9.907, "CNNC_torsion": 3.986, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 4.890, "planarity": 0.062, "simple_Shear": -0.169, "simple_Stretch": -0.121, "simple_Buckle": 0.508, "simple_Propeller": 4.864, "bp_simpleParams": [ -0.169, -0.121, -0.070, 0.508, 4.864, 0.886 ], "bp_params": [ -0.167, -0.123, -0.070, 0.448, 4.869, 0.886 ], "frame": { "rmsd": null, "origin": [ 207.895, 214.095, 160.006 ], "x_axis": [ 0.275, 0.734, 0.621 ], "y_axis": [ 0.955, -0.135, -0.263 ], "z_axis": [ -0.109, 0.666, -0.738 ], "quaternion": [ -0.317, 0.733, 0.576, 0.175 ] } }, { "index": 461, "nt1": "///2/1177", "nt2": "///2/1184", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.031, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 75.548, "chi2": 177.208, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.820, "C1C1_dist": 10.315, "N1N9_dist": 8.942, "C6C8_dist": 10.149, "CNNC_torsion": -0.111, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.77],O2(carbonyl)-N2(amino)[3.21],N3(imino)-O6(carbonyl)[3.47]", "interBase_angle": 5.001, "planarity": 0.102, "simple_Shear": 2.397, "simple_Stretch": 0.526, "simple_Buckle": 3.557, "simple_Propeller": 3.515, "bp_simpleParams": [ 2.397, 0.526, 0.174, 3.557, 3.515, 14.853 ], "bp_params": [ 2.453, -0.055, 0.174, 4.287, 2.575, 14.846 ], "frame": { "rmsd": null, "origin": [ 207.423, 217.856, 159.006 ], "x_axis": [ 0.854, 0.425, 0.300 ], "y_axis": [ 0.512, -0.586, -0.628 ], "z_axis": [ -0.091, 0.690, -0.718 ], "quaternion": [ -0.371, 0.889, 0.264, 0.059 ] } }, { "index": 462, "nt1": "///2/1178", "nt2": "///2/1183", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.010, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.004, "chi2": -156.713, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.984, "C1C1_dist": 10.610, "N1N9_dist": 9.177, "C6C8_dist": 10.350, "CNNC_torsion": 6.163, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.54],O4(carbonyl)-N6(amino)[3.94]", "interBase_angle": 6.562, "planarity": 0.316, "simple_Shear": -0.247, "simple_Stretch": 0.341, "simple_Buckle": -1.464, "simple_Propeller": -6.397, "bp_simpleParams": [ -0.247, 0.341, -1.529, -1.464, -6.397, 12.062 ], "bp_params": [ -0.258, 0.333, -1.529, -1.263, -6.439, 12.080 ], "frame": { "rmsd": null, "origin": [ 206.771, 221.190, 158.982 ], "x_axis": [ 0.979, -0.040, 0.201 ], "y_axis": [ 0.175, -0.338, -0.925 ], "z_axis": [ 0.105, 0.940, -0.323 ], "quaternion": [ 0.574, -0.812, -0.042, -0.094 ] } }, { "index": 463, "nt1": "///2/1179", "nt2": "///2/1182", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -172.135, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 99.233, "chi2": -154.714, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 18.433, "C1C1_dist": 9.311, "N1N9_dist": 8.289, "C6C8_dist": 8.469, "CNNC_torsion": -112.270, "hbonds_num": 2, "hbonds_desc": "N2(amino)-OP2[2.42],N2(amino)-N7[3.78]", "interBase_angle": 23.396, "planarity": 0.517, "simple_Shear": 8.387, "simple_Stretch": 3.428, "simple_Buckle": -0.523, "simple_Propeller": 23.390, "bp_simpleParams": [ 8.387, 3.428, 2.118, -0.523, 23.390, -10.359 ], "bp_params": [ 7.083, -5.650, 2.118, 20.167, 11.859, -10.256 ], "frame": { "rmsd": null, "origin": [ 204.489, 224.585, 158.807 ], "x_axis": [ 0.613, -0.674, -0.412 ], "y_axis": [ -0.743, -0.315, -0.591 ], "z_axis": [ 0.268, 0.669, -0.694 ], "quaternion": [ -0.389, 0.810, -0.438, -0.045 ] } }, { "index": 464, "nt1": "///2/1200", "nt2": "///2/1357", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -131.495, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.447, "chi2": -145.075, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.199, "C1C1_dist": 8.769, "N1N9_dist": 8.395, "C6C8_dist": 10.486, "CNNC_torsion": -165.465, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 16.354, "planarity": 0.233, "simple_Shear": 6.066, "simple_Stretch": 4.155, "simple_Buckle": 2.896, "simple_Propeller": 16.096, "bp_simpleParams": [ 6.066, 4.155, -0.012, 2.896, 16.096, -128.606 ], "bp_params": [ -1.270, -7.242, -0.012, 9.498, -13.313, -128.754 ], "frame": { "rmsd": null, "origin": [ 182.155, 200.437, 196.004 ], "x_axis": [ -0.500, 0.537, -0.680 ], "y_axis": [ -0.845, -0.474, 0.247 ], "z_axis": [ -0.190, 0.698, 0.691 ], "quaternion": [ 0.423, -0.266, 0.289, 0.816 ] } }, { "index": 465, "nt1": "///2/1203", "nt2": "///2/1697", "bp": "U-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.956, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.934, "chi2": -139.733, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 77.764, "C1C1_dist": 9.861, "N1N9_dist": 8.572, "C6C8_dist": 9.911, "CNNC_torsion": 38.057, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)*N1[2.99]", "interBase_angle": 47.215, "planarity": 0.558, "simple_Shear": -2.796, "simple_Stretch": 0.722, "simple_Buckle": 29.489, "simple_Propeller": 36.874, "bp_simpleParams": [ -2.796, 0.722, -0.794, 29.489, 36.874, 22.473 ], "bp_params": [ -2.887, -0.060, -0.794, 18.155, 43.585, 23.899 ], "frame": { "rmsd": null, "origin": [ 185.843, 206.954, 204.458 ], "x_axis": [ -0.065, -0.395, -0.916 ], "y_axis": [ -0.965, -0.209, 0.159 ], "z_axis": [ -0.254, 0.895, -0.368 ], "quaternion": [ -0.299, 0.615, -0.553, -0.476 ] } }, { "index": 466, "nt1": "///2/1203", "nt2": "///2/1699", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": 175.956, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 72.072, "chi2": -156.685, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.924, "C1C1_dist": 9.532, "N1N9_dist": 8.626, "C6C8_dist": 10.661, "CNNC_torsion": -116.214, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N1[3.24]", "interBase_angle": 64.606, "planarity": 0.846, "simple_Shear": 4.275, "simple_Stretch": 2.506, "simple_Buckle": 9.792, "simple_Propeller": 63.860, "bp_simpleParams": [ 4.275, 2.506, -0.041, 9.792, 63.860, -161.191 ], "bp_params": [ -0.156, -4.953, -0.041, 49.493, -41.526, -160.403 ], "frame": { "rmsd": null, "origin": [ 186.360, 208.052, 208.221 ], "x_axis": [ -0.895, -0.346, 0.280 ], "y_axis": [ 0.150, 0.357, 0.922 ], "z_axis": [ -0.419, 0.867, -0.268 ], "quaternion": [ -0.220, -0.062, 0.794, 0.563 ] } }, { "index": 467, "nt1": "///2/1205", "nt2": "///2/1694", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -101.109, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 75.082, "chi2": -155.589, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.839, "C1C1_dist": 9.412, "N1N9_dist": 8.413, "C6C8_dist": 9.681, "CNNC_torsion": -20.397, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O4(carbonyl)[3.91]", "interBase_angle": 64.604, "planarity": 0.837, "simple_Shear": 1.570, "simple_Stretch": 1.383, "simple_Buckle": 62.431, "simple_Propeller": -16.613, "bp_simpleParams": [ 1.570, 1.383, 0.318, 62.431, -16.613, 29.302 ], "bp_params": [ 1.741, 1.160, 0.318, 60.219, -23.396, 26.163 ], "frame": { "rmsd": null, "origin": [ 182.160, 213.815, 202.273 ], "x_axis": [ -0.918, -0.336, 0.212 ], "y_axis": [ -0.005, 0.544, 0.839 ], "z_axis": [ -0.397, 0.769, -0.501 ], "quaternion": [ -0.177, -0.099, 0.861, 0.467 ] } }, { "index": 468, "nt1": "///2/1206", "nt2": "///2/1692", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -71.979, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 0.686, "chi2": -162.529, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.597, "C1C1_dist": 11.388, "N1N9_dist": 9.248, "C6C8_dist": 9.774, "CNNC_torsion": -176.063, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O2(carbonyl)[3.14]", "interBase_angle": 30.947, "planarity": 0.368, "simple_Shear": -0.387, "simple_Stretch": 0.901, "simple_Buckle": -8.235, "simple_Propeller": 29.831, "bp_simpleParams": [ -0.387, 0.901, 2.009, -8.235, 29.831, 124.143 ], "bp_params": [ -0.877, -0.439, 2.009, -29.354, -9.800, 122.725 ], "frame": { "rmsd": null, "origin": [ 178.463, 217.191, 200.970 ], "x_axis": [ -0.524, -0.816, -0.243 ], "y_axis": [ -0.475, 0.517, -0.713 ], "z_axis": [ 0.707, -0.259, -0.658 ], "quaternion": [ 0.289, -0.393, 0.822, -0.296 ] } }, { "index": 469, "nt1": "///2/1206", "nt2": "///2/1693", "bp": "C+G", "name": "--", "Saenger": "--", "LW": ".WS", "DSSR": ".W+m", "intra_chain": true, "chi1": -71.979, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 33.325, "chi2": -154.871, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.326, "C1C1_dist": 9.163, "N1N9_dist": 7.481, "C6C8_dist": 8.046, "CNNC_torsion": -64.299, "hbonds_num": 1, "hbonds_desc": "N3-N1(imino)[3.15]", "interBase_angle": 62.820, "planarity": 1.091, "simple_Shear": 1.105, "simple_Stretch": 0.033, "simple_Buckle": -25.010, "simple_Propeller": 57.627, "bp_simpleParams": [ 1.105, 0.033, -0.788, -25.010, 57.627, 92.221 ], "bp_params": [ 0.124, 1.099, -0.788, -61.028, -14.898, 84.182 ], "frame": { "rmsd": null, "origin": [ 179.873, 216.652, 200.800 ], "x_axis": [ -0.739, -0.561, -0.373 ], "y_axis": [ -0.106, 0.643, -0.758 ], "z_axis": [ 0.665, -0.521, -0.535 ], "quaternion": [ 0.304, -0.195, 0.854, -0.374 ] } }, { "index": 470, "nt1": "///2/1208", "nt2": "///2/1691", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.212, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.622, "chi2": -164.509, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.584, "C1C1_dist": 10.502, "N1N9_dist": 8.833, "C6C8_dist": 9.820, "CNNC_torsion": 1.274, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.84]", "interBase_angle": 4.434, "planarity": 0.117, "simple_Shear": 0.040, "simple_Stretch": -0.141, "simple_Buckle": -1.927, "simple_Propeller": -3.993, "bp_simpleParams": [ 0.040, -0.141, -0.567, -1.927, -3.993, 2.266 ], "bp_params": [ 0.038, -0.142, -0.567, -1.964, -3.975, 2.267 ], "frame": { "rmsd": null, "origin": [ 173.723, 218.960, 201.110 ], "x_axis": [ 0.441, -0.175, 0.880 ], "y_axis": [ 0.494, 0.866, -0.076 ], "z_axis": [ -0.749, 0.468, 0.468 ], "quaternion": [ 0.833, -0.163, -0.489, -0.201 ] } }, { "index": 471, "nt1": "///2/1209", "nt2": "///2/1690", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.244, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.636, "chi2": -165.323, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.396, "C1C1_dist": 10.768, "N1N9_dist": 8.950, "C6C8_dist": 9.772, "CNNC_torsion": -3.336, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.66],N1-N3(imino)[2.80]", "interBase_angle": 5.531, "planarity": 0.075, "simple_Shear": 0.479, "simple_Stretch": -0.144, "simple_Buckle": -4.663, "simple_Propeller": -2.975, "bp_simpleParams": [ 0.479, -0.144, 0.055, -4.663, -2.975, -5.583 ], "bp_params": [ 0.471, -0.169, 0.055, -4.814, -2.724, -5.580 ], "frame": { "rmsd": null, "origin": [ 170.471, 219.339, 202.932 ], "x_axis": [ 0.687, 0.285, 0.669 ], "y_axis": [ 0.198, 0.811, -0.550 ], "z_axis": [ -0.699, 0.510, 0.501 ], "quaternion": [ 0.866, -0.306, -0.395, 0.025 ] } }, { "index": 472, "nt1": "///2/1210", "nt2": "///2/1689", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.182, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.029, "chi2": 176.801, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.550, "C1C1_dist": 11.369, "N1N9_dist": 9.619, "C6C8_dist": 10.574, "CNNC_torsion": -4.608, "hbonds_num": 2, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.33],N2(amino)-N3[3.26]", "interBase_angle": 3.274, "planarity": 0.095, "simple_Shear": 1.070, "simple_Stretch": 0.609, "simple_Buckle": -2.881, "simple_Propeller": -1.556, "bp_simpleParams": [ 1.070, 0.609, 0.312, -2.881, -1.556, 1.526 ], "bp_params": [ 1.132, 0.486, 0.312, -3.037, -1.224, 1.526 ], "frame": { "rmsd": null, "origin": [ 169.192, 220.118, 206.395 ], "x_axis": [ 0.707, 0.676, 0.207 ], "y_axis": [ -0.283, 0.540, -0.793 ], "z_axis": [ -0.648, 0.502, 0.573 ], "quaternion": [ 0.840, -0.385, -0.255, 0.286 ] } }, { "index": 473, "nt1": "///2/1211", "nt2": "///2/1688", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.645, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.717, "chi2": -167.540, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.873, "C1C1_dist": 10.747, "N1N9_dist": 8.959, "C6C8_dist": 9.889, "CNNC_torsion": 1.701, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 8.328, "planarity": 0.131, "simple_Shear": -0.205, "simple_Stretch": -0.139, "simple_Buckle": 0.836, "simple_Propeller": 8.286, "bp_simpleParams": [ -0.205, -0.139, 0.332, 0.836, 8.286, 1.026 ], "bp_params": [ -0.203, -0.142, 0.332, 0.711, 8.298, 1.029 ], "frame": { "rmsd": null, "origin": [ 168.689, 221.173, 210.028 ], "x_axis": [ 0.594, 0.772, -0.226 ], "y_axis": [ -0.585, 0.222, -0.780 ], "z_axis": [ -0.552, 0.595, 0.584 ], "quaternion": [ 0.774, -0.444, -0.105, 0.438 ] } }, { "index": 474, "nt1": "///2/1212", "nt2": "///2/1687", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.682, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.555, "chi2": -157.115, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.291, "C1C1_dist": 10.642, "N1N9_dist": 8.921, "C6C8_dist": 9.856, "CNNC_torsion": 1.502, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 9.648, "planarity": 0.139, "simple_Shear": -0.189, "simple_Stretch": -0.167, "simple_Buckle": -8.634, "simple_Propeller": -4.305, "bp_simpleParams": [ -0.189, -0.167, -0.703, -8.634, -4.305, 0.981 ], "bp_params": [ -0.186, -0.169, -0.703, -8.582, -4.409, 0.979 ], "frame": { "rmsd": null, "origin": [ 168.454, 223.310, 213.269 ], "x_axis": [ 0.254, 0.622, -0.741 ], "y_axis": [ -0.905, -0.118, -0.410 ], "z_axis": [ -0.342, 0.774, 0.532 ], "quaternion": [ 0.646, -0.458, 0.154, 0.591 ] } }, { "index": 475, "nt1": "///2/1213", "nt2": "///2/1686", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.672, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.748, "chi2": -158.970, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.802, "C1C1_dist": 10.804, "N1N9_dist": 8.973, "C6C8_dist": 9.861, "CNNC_torsion": 3.619, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 4.333, "planarity": 0.151, "simple_Shear": 0.148, "simple_Stretch": -0.166, "simple_Buckle": -4.184, "simple_Propeller": 1.127, "bp_simpleParams": [ 0.148, -0.166, -0.501, -4.184, 1.127, -1.249 ], "bp_params": [ 0.147, -0.168, -0.501, -4.173, 1.167, -1.248 ], "frame": { "rmsd": null, "origin": [ 168.219, 226.078, 215.691 ], "x_axis": [ -0.248, 0.430, -0.868 ], "y_axis": [ -0.888, -0.460, 0.026 ], "z_axis": [ -0.388, 0.777, 0.496 ], "quaternion": [ 0.444, -0.423, 0.270, 0.742 ] } }, { "index": 476, "nt1": "///2/1214", "nt2": "///2/1682", "bp": "A-C", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -160.921, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 10.293, "chi2": -123.576, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 23.135, "C1C1_dist": 10.996, "N1N9_dist": 8.237, "C6C8_dist": 7.098, "CNNC_torsion": 178.349, "hbonds_num": 3, "hbonds_desc": "N7-N4(amino)[2.91],N6(amino)-O2(carbonyl)[3.25],N6(amino)-N3[2.98]", "interBase_angle": 2.837, "planarity": 0.124, "simple_Shear": -2.922, "simple_Stretch": 1.020, "simple_Buckle": -2.669, "simple_Propeller": -0.963, "bp_simpleParams": [ -2.922, 1.020, -0.736, -2.669, -0.963, -95.128 ], "bp_params": [ -3.069, -0.397, -0.736, -1.955, -2.056, -95.129 ], "frame": { "rmsd": null, "origin": [ 166.586, 228.580, 217.568 ], "x_axis": [ -0.884, -0.370, -0.287 ], "y_axis": [ -0.077, -0.490, 0.868 ], "z_axis": [ -0.462, 0.789, 0.404 ], "quaternion": [ -0.088, -0.225, 0.497, 0.833 ] } }, { "index": 477, "nt1": "///2/1214", "nt2": "///2/1685", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.921, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.047, "chi2": -162.284, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.550, "C1C1_dist": 11.437, "N1N9_dist": 9.496, "C6C8_dist": 10.185, "CNNC_torsion": -17.014, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.03],N1-N3(imino)[3.30]", "interBase_angle": 18.459, "planarity": 0.229, "simple_Shear": 0.618, "simple_Stretch": 0.332, "simple_Buckle": 9.701, "simple_Propeller": -15.704, "bp_simpleParams": [ 0.618, 0.332, 0.238, 9.701, -15.704, -11.154 ], "bp_params": [ 0.637, 0.294, 0.238, 8.706, -16.277, -11.235 ], "frame": { "rmsd": null, "origin": [ 168.459, 228.976, 217.850 ], "x_axis": [ -0.544, -0.037, -0.838 ], "y_axis": [ -0.608, -0.670, 0.425 ], "z_axis": [ -0.578, 0.741, 0.342 ], "quaternion": [ 0.179, -0.443, 0.365, 0.800 ] } }, { "index": 478, "nt1": "///2/1215", "nt2": "///2/1220", "bp": "C+A", "name": "~rWobble", "Saenger": "26-XXVI", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -111.215, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 36.875, "chi2": -167.742, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 14.208, "C1C1_dist": 12.345, "N1N9_dist": 9.798, "C6C8_dist": 9.768, "CNNC_torsion": 128.345, "hbonds_num": 2, "hbonds_desc": "N3-N6(amino)[3.19],N4(amino)-N1[3.39]", "interBase_angle": 41.685, "planarity": 0.455, "simple_Shear": -1.606, "simple_Stretch": 0.752, "simple_Buckle": -40.699, "simple_Propeller": 9.015, "bp_simpleParams": [ -1.606, 0.752, 1.031, -40.699, 9.015, -155.263 ], "bp_params": [ 0.448, 1.716, 1.031, 1.112, 41.670, -156.835 ], "frame": { "rmsd": null, "origin": [ 160.095, 237.481, 226.248 ], "x_axis": [ 0.149, -0.776, 0.613 ], "y_axis": [ 0.831, -0.238, -0.503 ], "z_axis": [ 0.536, 0.584, 0.609 ], "quaternion": [ 0.617, -0.441, -0.031, -0.652 ] } }, { "index": 479, "nt1": "///2/1217", "nt2": "///2/1681", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.135, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.841, "chi2": -159.324, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.149, "C1C1_dist": 10.728, "N1N9_dist": 8.950, "C6C8_dist": 9.856, "CNNC_torsion": -12.851, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.87]", "interBase_angle": 11.254, "planarity": 0.160, "simple_Shear": 0.053, "simple_Stretch": -0.092, "simple_Buckle": -2.314, "simple_Propeller": -11.014, "bp_simpleParams": [ 0.053, -0.092, 0.282, -2.314, -11.014, -1.573 ], "bp_params": [ 0.052, -0.092, 0.282, -2.432, -10.988, -1.579 ], "frame": { "rmsd": null, "origin": [ 162.282, 229.829, 218.803 ], "x_axis": [ -0.327, -0.729, 0.601 ], "y_axis": [ 0.860, 0.034, 0.509 ], "z_axis": [ -0.392, 0.683, 0.616 ], "quaternion": [ 0.575, -0.076, -0.432, -0.691 ] } }, { "index": 480, "nt1": "///2/1217", "nt2": "///2/1684", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -166.135, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 132.425, "chi2": -163.355, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 34.767, "C1C1_dist": 7.821, "N1N9_dist": 7.618, "C6C8_dist": 9.151, "CNNC_torsion": -31.217, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[3.32],O2'(hydroxyl)-N3[3.09],N3-N4(amino)[3.18]", "interBase_angle": 44.196, "planarity": 0.540, "simple_Shear": 4.969, "simple_Stretch": 2.834, "simple_Buckle": -17.831, "simple_Propeller": -40.439, "bp_simpleParams": [ 4.969, 2.834, 1.107, -17.831, -40.439, 64.678 ], "bp_params": [ 5.611, -1.111, 1.107, -39.707, -19.408, 62.318 ], "frame": { "rmsd": null, "origin": [ 164.650, 231.420, 218.606 ], "x_axis": [ -0.683, -0.696, 0.220 ], "y_axis": [ 0.375, -0.076, 0.924 ], "z_axis": [ -0.626, 0.714, 0.313 ], "quaternion": [ -0.372, -0.141, 0.569, 0.720 ] } }, { "index": 481, "nt1": "///2/1218", "nt2": "///2/1680", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.308, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.118, "chi2": -160.161, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.780, "C1C1_dist": 10.769, "N1N9_dist": 8.967, "C6C8_dist": 9.880, "CNNC_torsion": -7.698, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 10.896, "planarity": 0.170, "simple_Shear": 0.153, "simple_Stretch": -0.130, "simple_Buckle": -5.413, "simple_Propeller": -9.456, "bp_simpleParams": [ 0.153, -0.130, -0.109, -5.413, -9.456, 0.010 ], "bp_params": [ 0.152, -0.132, -0.109, -5.525, -9.391, 0.010 ], "frame": { "rmsd": null, "origin": [ 159.694, 232.382, 220.330 ], "x_axis": [ 0.180, -0.567, 0.804 ], "y_axis": [ 0.913, 0.401, 0.078 ], "z_axis": [ -0.367, 0.719, 0.590 ], "quaternion": [ 0.737, -0.218, -0.397, -0.502 ] } }, { "index": 482, "nt1": "///2/1221", "nt2": "///2/1645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.518, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.169, "chi2": -159.004, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.418, "C1C1_dist": 10.325, "N1N9_dist": 8.560, "C6C8_dist": 9.465, "CNNC_torsion": -2.169, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.57],N1(imino)-N3[2.60],N2(amino)-O2(carbonyl)[2.50]", "interBase_angle": 8.648, "planarity": 0.129, "simple_Shear": -0.606, "simple_Stretch": -0.515, "simple_Buckle": -8.642, "simple_Propeller": 0.332, "bp_simpleParams": [ -0.606, -0.515, 0.043, -8.642, 0.332, -0.657 ], "bp_params": [ -0.577, -0.548, 0.043, -8.647, -0.152, -0.655 ], "frame": { "rmsd": null, "origin": [ 162.059, 238.525, 228.164 ], "x_axis": [ 0.649, -0.107, -0.753 ], "y_axis": [ -0.482, 0.708, -0.516 ], "z_axis": [ 0.588, 0.698, 0.408 ], "quaternion": [ 0.831, -0.365, 0.403, 0.113 ] } }, { "index": 483, "nt1": "///2/1222", "nt2": "///2/1644", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.431, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.066, "chi2": -157.931, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.603, "C1C1_dist": 10.724, "N1N9_dist": 8.940, "C6C8_dist": 9.846, "CNNC_torsion": 8.525, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 5.138, "planarity": 0.122, "simple_Shear": -0.162, "simple_Stretch": -0.188, "simple_Buckle": -2.768, "simple_Propeller": 4.328, "bp_simpleParams": [ -0.162, -0.188, -0.571, -2.768, 4.328, -1.010 ], "bp_params": [ -0.159, -0.190, -0.571, -2.818, 4.296, -1.010 ], "frame": { "rmsd": null, "origin": [ 164.601, 240.057, 230.572 ], "x_axis": [ 0.254, 0.289, -0.923 ], "y_axis": [ -0.747, 0.665, 0.002 ], "z_axis": [ 0.615, 0.688, 0.385 ], "quaternion": [ 0.759, -0.226, 0.507, 0.341 ] } }, { "index": 484, "nt1": "///2/1223", "nt2": "///2/1643", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.553, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.171, "chi2": -165.810, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.235, "C1C1_dist": 10.731, "N1N9_dist": 8.961, "C6C8_dist": 9.880, "CNNC_torsion": 0.621, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.88]", "interBase_angle": 4.273, "planarity": 0.049, "simple_Shear": 0.089, "simple_Stretch": -0.062, "simple_Buckle": 3.042, "simple_Propeller": 3.000, "bp_simpleParams": [ 0.089, -0.062, 0.066, 3.042, 3.000, -0.737 ], "bp_params": [ 0.088, -0.064, 0.066, 3.085, 2.957, -0.737 ], "frame": { "rmsd": null, "origin": [ 167.725, 242.001, 230.988 ], "x_axis": [ -0.209, 0.545, -0.812 ], "y_axis": [ -0.778, 0.411, 0.476 ], "z_axis": [ 0.593, 0.731, 0.338 ], "quaternion": [ 0.621, -0.103, 0.566, 0.533 ] } }, { "index": 485, "nt1": "///2/1224", "nt2": "///2/1642", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.659, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.520, "chi2": -170.420, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.400, "C1C1_dist": 10.282, "N1N9_dist": 8.667, "C6C8_dist": 9.691, "CNNC_torsion": -2.285, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.02],N1(imino)-O2(carbonyl)[2.79],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 2.637, "planarity": 0.076, "simple_Shear": -1.446, "simple_Stretch": -0.219, "simple_Buckle": 2.143, "simple_Propeller": 1.538, "bp_simpleParams": [ -1.446, -0.219, 0.380, 2.143, 1.538, 3.915 ], "bp_params": [ -1.401, -0.418, 0.380, 1.908, 1.821, 3.915 ], "frame": { "rmsd": null, "origin": [ 170.819, 244.911, 228.409 ], "x_axis": [ -0.398, 0.597, -0.697 ], "y_axis": [ -0.714, 0.275, 0.643 ], "z_axis": [ 0.576, 0.754, 0.317 ], "quaternion": [ 0.546, -0.051, 0.582, 0.600 ] } }, { "index": 486, "nt1": "///2/1225", "nt2": "///2/1641", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.874, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.013, "chi2": -174.362, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.494, "C1C1_dist": 10.496, "N1N9_dist": 8.833, "C6C8_dist": 9.839, "CNNC_torsion": 0.385, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.81],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 2.094, "planarity": 0.039, "simple_Shear": -0.052, "simple_Stretch": -0.107, "simple_Buckle": 0.640, "simple_Propeller": 1.994, "bp_simpleParams": [ -0.052, -0.107, 0.128, 0.640, 1.994, 2.656 ], "bp_params": [ -0.051, -0.108, 0.128, 0.620, 2.000, 2.656 ], "frame": { "rmsd": null, "origin": [ 174.106, 247.012, 228.065 ], "x_axis": [ -0.754, 0.638, -0.156 ], "y_axis": [ -0.321, -0.151, 0.935 ], "z_axis": [ 0.573, 0.755, 0.318 ], "quaternion": [ 0.322, 0.140, 0.567, 0.745 ] } }, { "index": 487, "nt1": "///2/1226", "nt2": "///2/1640", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -171.491, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 95.860, "chi2": -169.989, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 6.231, "C1C1_dist": 9.686, "N1N9_dist": 8.472, "C6C8_dist": 8.892, "CNNC_torsion": 163.495, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.99],N2(amino)-N7[2.82],N3-N6(amino)[3.02]", "interBase_angle": 3.874, "planarity": 0.056, "simple_Shear": 7.522, "simple_Stretch": 2.555, "simple_Buckle": 0.236, "simple_Propeller": 3.867, "bp_simpleParams": [ 7.522, 2.555, -0.172, 0.236, 3.867, -5.416 ], "bp_params": [ 6.798, -4.111, -0.172, 3.111, 2.309, -5.415 ], "frame": { "rmsd": null, "origin": [ 176.764, 249.441, 227.963 ], "x_axis": [ -0.674, 0.186, 0.715 ], "y_axis": [ 0.493, -0.608, 0.623 ], "z_axis": [ 0.550, 0.772, 0.318 ], "quaternion": [ -0.095, 0.392, 0.433, 0.806 ] } }, { "index": 488, "nt1": "///2/1227", "nt2": "///2/1531", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.183, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 38.980, "chi2": -172.512, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.441, "C1C1_dist": 13.987, "N1N9_dist": 11.734, "C6C8_dist": 11.825, "CNNC_torsion": 1.794, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[3.47],N1(imino)-N1[3.99]", "interBase_angle": 21.632, "planarity": 0.360, "simple_Shear": -0.216, "simple_Stretch": 2.449, "simple_Buckle": 20.060, "simple_Propeller": -8.094, "bp_simpleParams": [ -0.216, 2.449, -0.719, 20.060, -8.094, -30.067 ], "bp_params": [ -0.282, 2.442, -0.719, 20.294, -7.488, -29.679 ], "frame": { "rmsd": null, "origin": [ 173.652, 253.806, 238.811 ], "x_axis": [ -0.221, -0.970, -0.098 ], "y_axis": [ 0.491, -0.023, -0.871 ], "z_axis": [ 0.843, -0.240, 0.481 ], "quaternion": [ 0.556, -0.284, 0.423, -0.657 ] } }, { "index": 489, "nt1": "///2/1228", "nt2": "///2/1530", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.423, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.078, "chi2": -156.734, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.583, "C1C1_dist": 10.744, "N1N9_dist": 8.958, "C6C8_dist": 9.847, "CNNC_torsion": -8.530, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.89]", "interBase_angle": 2.354, "planarity": 0.133, "simple_Shear": 0.061, "simple_Stretch": -0.120, "simple_Buckle": 0.977, "simple_Propeller": -2.141, "bp_simpleParams": [ 0.061, -0.120, 0.624, 0.977, -2.141, -2.077 ], "bp_params": [ 0.059, -0.120, 0.624, 0.953, -2.152, -2.077 ], "frame": { "rmsd": null, "origin": [ 175.571, 251.844, 242.019 ], "x_axis": [ -0.316, -0.660, -0.682 ], "y_axis": [ 0.356, 0.584, -0.730 ], "z_axis": [ 0.880, -0.473, 0.050 ], "quaternion": [ 0.574, -0.112, 0.680, -0.442 ] } }, { "index": 490, "nt1": "///2/1228", "nt2": "///2/1634", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -179.423, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 156.306, "chi2": -169.511, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.010, "C1C1_dist": 5.711, "N1N9_dist": 7.209, "C6C8_dist": 9.681, "CNNC_torsion": -17.556, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.13],O2'(hydroxyl)-N3[2.41]", "interBase_angle": 32.611, "planarity": 0.371, "simple_Shear": 0.791, "simple_Stretch": 7.103, "simple_Buckle": -26.502, "simple_Propeller": -19.002, "bp_simpleParams": [ 0.791, 7.103, -0.053, -26.502, -19.002, 148.850 ], "bp_params": [ 2.948, 6.510, -0.053, -31.121, -9.744, 147.829 ], "frame": { "rmsd": null, "origin": [ 176.436, 254.646, 243.890 ], "x_axis": [ -0.503, -0.698, 0.510 ], "y_axis": [ 0.044, -0.610, -0.791 ], "z_axis": [ 0.863, -0.375, 0.337 ], "quaternion": [ -0.237, 0.439, -0.373, 0.783 ] } }, { "index": 491, "nt1": "///2/1229", "nt2": "///2/1529", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.751, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.202, "chi2": -163.262, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.812, "C1C1_dist": 10.721, "N1N9_dist": 8.943, "C6C8_dist": 9.868, "CNNC_torsion": -0.943, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 2.090, "planarity": 0.048, "simple_Shear": -0.192, "simple_Stretch": -0.154, "simple_Buckle": -0.636, "simple_Propeller": -1.991, "bp_simpleParams": [ -0.192, -0.154, -0.193, -0.636, -1.991, 0.098 ], "bp_params": [ -0.190, -0.157, -0.193, -0.607, -2.000, 0.098 ], "frame": { "rmsd": null, "origin": [ 178.118, 249.192, 243.506 ], "x_axis": [ -0.119, -0.225, -0.967 ], "y_axis": [ 0.456, 0.853, -0.254 ], "z_axis": [ 0.882, -0.471, 0.001 ], "quaternion": [ 0.659, 0.082, 0.702, -0.258 ] } }, { "index": 492, "nt1": "///2/1230", "nt2": "///2/1528", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.287, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.946, "chi2": 178.125, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.324, "C1C1_dist": 10.747, "N1N9_dist": 8.972, "C6C8_dist": 9.902, "CNNC_torsion": -3.100, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 3.843, "planarity": 0.043, "simple_Shear": 0.188, "simple_Stretch": -0.119, "simple_Buckle": 2.510, "simple_Propeller": -2.910, "bp_simpleParams": [ 0.188, -0.119, -0.090, 2.510, -2.910, 0.397 ], "bp_params": [ 0.187, -0.122, -0.090, 2.470, -2.944, 0.397 ], "frame": { "rmsd": null, "origin": [ 180.226, 246.531, 242.860 ], "x_axis": [ 0.167, 0.374, -0.912 ], "y_axis": [ 0.435, 0.802, 0.408 ], "z_axis": [ 0.885, -0.465, -0.029 ], "quaternion": [ 0.697, 0.314, 0.645, -0.022 ] } }, { "index": 493, "nt1": "///2/1230", "nt2": "///2/1665", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -167.287, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.632, "chi2": -115.855, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 44.134, "C1C1_dist": 9.225, "N1N9_dist": 8.625, "C6C8_dist": 10.515, "CNNC_torsion": 146.156, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O6(carbonyl)[3.08],O2'(hydroxyl)-N1(imino)[3.11],O2(carbonyl)-N2(amino)[2.74]", "interBase_angle": 47.068, "planarity": 0.680, "simple_Shear": 5.831, "simple_Stretch": 3.618, "simple_Buckle": 30.348, "simple_Propeller": -35.977, "bp_simpleParams": [ 5.831, 3.618, 2.149, 30.348, -35.977, -132.658 ], "bp_params": [ -0.976, -6.792, 2.149, -47.068, 0.118, -128.892 ], "frame": { "rmsd": null, "origin": [ 180.822, 246.825, 246.277 ], "x_axis": [ 0.492, 0.870, -0.023 ], "y_axis": [ 0.369, -0.185, 0.911 ], "z_axis": [ 0.788, -0.457, -0.412 ], "quaternion": [ 0.473, 0.723, 0.429, 0.265 ] } }, { "index": 494, "nt1": "///2/1231", "nt2": "///2/1253", "bp": "C-A", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -162.299, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 87.403, "chi2": -99.232, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 1.138, "C1C1_dist": 9.737, "N1N9_dist": 8.333, "C6C8_dist": 8.588, "CNNC_torsion": -176.581, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.98],O2(carbonyl)-N6(amino)[2.98]", "interBase_angle": 19.818, "planarity": 0.245, "simple_Shear": 7.584, "simple_Stretch": 2.537, "simple_Buckle": 10.460, "simple_Propeller": 16.832, "bp_simpleParams": [ 7.584, 2.537, -0.980, 10.460, 16.832, -20.304 ], "bp_params": [ 6.693, -4.378, -0.980, 19.688, 2.268, -20.016 ], "frame": { "rmsd": null, "origin": [ 182.524, 240.988, 245.774 ], "x_axis": [ 0.105, 0.905, -0.412 ], "y_axis": [ 0.214, 0.384, 0.898 ], "z_axis": [ 0.971, -0.182, -0.154 ], "quaternion": [ 0.578, 0.468, 0.599, 0.299 ] } }, { "index": 495, "nt1": "///2/1232", "nt2": "///2/1527", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -148.999, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 79.152, "chi2": -138.317, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.630, "C1C1_dist": 9.222, "N1N9_dist": 7.883, "C6C8_dist": 9.119, "CNNC_torsion": -10.168, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.77]", "interBase_angle": 18.248, "planarity": 0.249, "simple_Shear": 2.982, "simple_Stretch": -0.408, "simple_Buckle": -16.981, "simple_Propeller": -6.681, "bp_simpleParams": [ 2.982, -0.408, 1.089, -16.981, -6.681, 12.723 ], "bp_params": [ 2.720, -1.288, 1.089, -18.207, -1.212, 12.565 ], "frame": { "rmsd": null, "origin": [ 184.164, 241.923, 241.263 ], "x_axis": [ 0.142, 0.990, -0.014 ], "y_axis": [ 0.581, -0.072, 0.811 ], "z_axis": [ 0.801, -0.123, -0.585 ], "quaternion": [ 0.348, 0.671, 0.586, 0.293 ] } }, { "index": 496, "nt1": "///2/1233", "nt2": "///2/1252", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -165.996, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 107.361, "chi2": -160.909, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 145.790, "C1C1_dist": 5.627, "N1N9_dist": 7.318, "C6C8_dist": 9.768, "CNNC_torsion": -10.169, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.20],N2(amino)-O2(carbonyl)[3.08],N3-O2'(hydroxyl)[3.04]", "interBase_angle": 40.973, "planarity": 0.471, "simple_Shear": -0.488, "simple_Stretch": 7.751, "simple_Buckle": -38.619, "simple_Propeller": 13.687, "bp_simpleParams": [ -0.488, 7.751, -1.019, -38.619, 13.687, 156.278 ], "bp_params": [ -1.928, 7.523, -1.019, -40.562, 5.790, 154.787 ], "frame": { "rmsd": null, "origin": [ 187.843, 239.974, 234.589 ], "x_axis": [ -0.056, 0.708, -0.704 ], "y_axis": [ 0.382, 0.666, 0.641 ], "z_axis": [ 0.923, -0.233, -0.307 ], "quaternion": [ 0.571, 0.383, 0.712, 0.143 ] } }, { "index": 497, "nt1": "///2/1233", "nt2": "///2/1525", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.996, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.737, "chi2": -163.891, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.494, "C1C1_dist": 10.776, "N1N9_dist": 8.923, "C6C8_dist": 9.789, "CNNC_torsion": 5.654, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 8.558, "planarity": 0.145, "simple_Shear": -0.172, "simple_Stretch": -0.227, "simple_Buckle": -8.424, "simple_Propeller": -1.512, "bp_simpleParams": [ -0.172, -0.227, -0.776, -8.424, -1.512, -1.744 ], "bp_params": [ -0.170, -0.229, -0.776, -8.406, -1.607, -1.740 ], "frame": { "rmsd": null, "origin": [ 189.265, 241.962, 237.914 ], "x_axis": [ 0.003, 0.829, 0.559 ], "y_axis": [ 0.183, -0.551, 0.815 ], "z_axis": [ 0.983, 0.100, -0.153 ], "quaternion": [ 0.274, 0.653, 0.387, 0.590 ] } }, { "index": 498, "nt1": "///2/1234", "nt2": "///2/1524", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.414, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.833, "chi2": -153.299, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.753, "C1C1_dist": 10.657, "N1N9_dist": 8.871, "C6C8_dist": 9.773, "CNNC_torsion": 9.917, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 0.695, "planarity": 0.240, "simple_Shear": 0.151, "simple_Stretch": -0.310, "simple_Buckle": -0.068, "simple_Propeller": 0.692, "bp_simpleParams": [ 0.151, -0.310, -1.068, -0.068, 0.692, -0.781 ], "bp_params": [ 0.147, -0.311, -1.068, -0.061, 0.692, -0.780 ], "frame": { "rmsd": null, "origin": [ 192.483, 243.209, 236.237 ], "x_axis": [ 0.017, 0.462, 0.887 ], "y_axis": [ 0.107, -0.882, 0.458 ], "z_axis": [ 0.994, 0.087, -0.064 ], "quaternion": [ 0.132, 0.701, 0.203, 0.671 ] } }, { "index": 499, "nt1": "///2/1235", "nt2": "///2/1523", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.095, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.624, "chi2": -170.809, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.094, "C1C1_dist": 10.707, "N1N9_dist": 8.943, "C6C8_dist": 9.873, "CNNC_torsion": 11.971, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 12.470, "planarity": 0.171, "simple_Shear": -0.135, "simple_Stretch": -0.147, "simple_Buckle": -6.697, "simple_Propeller": 10.519, "bp_simpleParams": [ -0.135, -0.147, -0.467, -6.697, 10.519, -0.412 ], "bp_params": [ -0.133, -0.149, -0.467, -6.813, 10.444, -0.413 ], "frame": { "rmsd": null, "origin": [ 196.189, 245.081, 236.522 ], "x_axis": [ -0.066, -0.089, 0.994 ], "y_axis": [ 0.006, -0.996, -0.089 ], "z_axis": [ 0.998, -0.000, 0.066 ], "quaternion": [ -0.033, 0.683, -0.031, 0.729 ] } }, { "index": 500, "nt1": "///2/1236", "nt2": "///2/1521", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.510, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.134, "chi2": -126.419, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 54.498, "C1C1_dist": 10.662, "N1N9_dist": 8.923, "C6C8_dist": 9.860, "CNNC_torsion": 0.310, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 7.973, "planarity": 0.116, "simple_Shear": -0.191, "simple_Stretch": -0.163, "simple_Buckle": -6.355, "simple_Propeller": -4.816, "bp_simpleParams": [ -0.191, -0.163, -0.552, -6.355, -4.816, 1.025 ], "bp_params": [ -0.189, -0.166, -0.552, -6.293, -4.896, 1.025 ], "frame": { "rmsd": null, "origin": [ 198.946, 245.102, 239.463 ], "x_axis": [ -0.325, -0.748, 0.579 ], "y_axis": [ 0.141, -0.644, -0.752 ], "z_axis": [ 0.935, -0.163, 0.315 ], "quaternion": [ -0.294, 0.501, -0.303, 0.756 ] } }, { "index": 501, "nt1": "///2/1236", "nt2": "///2/1522", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -173.510, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 93.556, "chi2": 26.224, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 10.930, "C1C1_dist": 11.193, "N1N9_dist": 9.981, "C6C8_dist": 10.919, "CNNC_torsion": 156.813, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[2.64]", "interBase_angle": 20.947, "planarity": 0.377, "simple_Shear": 2.089, "simple_Stretch": 3.999, "simple_Buckle": -17.163, "simple_Propeller": 12.009, "bp_simpleParams": [ 2.089, 3.999, -1.816, -17.163, 12.009, -94.829 ], "bp_params": [ 3.250, -3.130, -1.816, 16.330, 13.119, -94.622 ], "frame": { "rmsd": null, "origin": [ 199.836, 247.077, 238.210 ], "x_axis": [ -0.014, -0.989, -0.150 ], "y_axis": [ 0.132, 0.147, -0.980 ], "z_axis": [ 0.991, -0.034, 0.128 ], "quaternion": [ 0.562, -0.421, 0.508, -0.499 ] } }, { "index": 502, "nt1": "///2/1237", "nt2": "///2/1520", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.930, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.653, "chi2": 115.900, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 46.358, "C1C1_dist": 10.928, "N1N9_dist": 8.986, "C6C8_dist": 9.846, "CNNC_torsion": -4.499, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 7.027, "planarity": 0.152, "simple_Shear": 0.181, "simple_Stretch": -0.155, "simple_Buckle": 7.025, "simple_Propeller": -0.187, "bp_simpleParams": [ 0.181, -0.155, 0.311, 7.025, -0.187, -0.953 ], "bp_params": [ 0.179, -0.157, 0.311, 7.022, -0.271, -0.952 ], "frame": { "rmsd": null, "origin": [ 201.521, 244.002, 241.378 ], "x_axis": [ -0.161, -0.960, -0.229 ], "y_axis": [ 0.219, 0.192, -0.957 ], "z_axis": [ 0.962, -0.204, 0.179 ], "quaternion": [ 0.550, -0.342, 0.542, -0.536 ] } }, { "index": 503, "nt1": "///2/1238", "nt2": "///2/1242", "bp": "U+U", "name": "--", "Saenger": "13-XIII", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -168.456, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.104, "chi2": 56.471, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 44.536, "C1C1_dist": 9.098, "N1N9_dist": 7.397, "C6C8_dist": 9.182, "CNNC_torsion": -173.987, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N3(imino)[3.44],N3(imino)-O2(carbonyl)[3.56]", "interBase_angle": 6.323, "planarity": 0.189, "simple_Shear": 4.211, "simple_Stretch": -0.051, "simple_Buckle": -1.800, "simple_Propeller": 6.061, "bp_simpleParams": [ 4.211, -0.051, -1.028, -1.800, 6.061, -178.303 ], "bp_params": [ -1.786, -3.814, -1.028, 6.263, -0.865, -178.300 ], "frame": { "rmsd": null, "origin": [ 204.682, 243.251, 243.568 ], "x_axis": [ 0.367, 0.718, -0.591 ], "y_axis": [ -0.126, 0.668, 0.734 ], "z_axis": [ 0.921, -0.195, 0.336 ], "quaternion": [ 0.770, 0.302, 0.491, 0.274 ] } }, { "index": 504, "nt1": "///2/1239", "nt2": "///2/1241", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -168.617, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 84.190, "chi2": -109.485, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.271, "C1C1_dist": 6.954, "N1N9_dist": 6.173, "C6C8_dist": 6.172, "CNNC_torsion": -173.760, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N7[2.74]", "interBase_angle": 30.209, "planarity": 0.304, "simple_Shear": 8.387, "simple_Stretch": 6.356, "simple_Buckle": 28.261, "simple_Propeller": 10.673, "bp_simpleParams": [ 8.387, 6.356, -1.208, 28.261, 10.673, -62.830 ], "bp_params": [ 6.221, -8.487, -1.208, 10.054, -28.487, -64.240 ], "frame": { "rmsd": null, "origin": [ 207.605, 240.078, 246.999 ], "x_axis": [ 0.114, 0.608, -0.786 ], "y_axis": [ -0.117, 0.794, 0.597 ], "z_axis": [ 0.987, 0.024, 0.161 ], "quaternion": [ 0.719, 0.199, 0.616, 0.252 ] } }, { "index": 505, "nt1": "///2/1240", "nt2": "///2/1267", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "cHS", "DSSR": "cM+m", "intra_chain": true, "chi1": 24.828, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 73.365, "chi2": -161.892, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 145.780, "C1C1_dist": 4.859, "N1N9_dist": 5.691, "C6C8_dist": 5.933, "CNNC_torsion": -3.621, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.36],N7*O2(carbonyl)[3.29]", "interBase_angle": 45.006, "planarity": 0.488, "simple_Shear": 2.204, "simple_Stretch": 8.580, "simple_Buckle": -41.852, "simple_Propeller": -16.553, "bp_simpleParams": [ 2.204, 8.580, -1.607, -41.852, -16.553, -43.087 ], "bp_params": [ -8.356, -2.940, -1.607, 36.686, -26.071, -42.158 ], "frame": { "rmsd": null, "origin": [ 209.143, 239.470, 253.767 ], "x_axis": [ -0.454, -0.697, 0.555 ], "y_axis": [ 0.355, -0.713, -0.605 ], "z_axis": [ 0.817, -0.078, 0.571 ], "quaternion": [ -0.318, 0.415, -0.206, 0.827 ] } }, { "index": 506, "nt1": "///2/1241", "nt2": "///2/1516", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -109.485, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.394, "chi2": 176.837, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 80.493, "C1C1_dist": 8.699, "N1N9_dist": 8.168, "C6C8_dist": 10.376, "CNNC_torsion": 152.737, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.19],N3-N2(amino)[2.77]", "interBase_angle": 32.784, "planarity": 0.403, "simple_Shear": 6.729, "simple_Stretch": 3.347, "simple_Buckle": 19.343, "simple_Propeller": -26.470, "bp_simpleParams": [ 6.729, 3.347, -1.322, 19.343, -26.470, 161.419 ], "bp_params": [ 2.324, 7.147, -1.322, 32.421, -4.866, 160.680 ], "frame": { "rmsd": null, "origin": [ 206.517, 237.915, 252.790 ], "x_axis": [ -0.096, 0.508, 0.856 ], "y_axis": [ 0.081, 0.861, -0.502 ], "z_axis": [ -0.992, 0.021, -0.124 ], "quaternion": [ 0.641, -0.204, -0.721, 0.166 ] } }, { "index": 507, "nt1": "///2/1244", "nt2": "///2/1257", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -151.528, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.734, "chi2": -126.744, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 42.048, "C1C1_dist": 11.965, "N1N9_dist": 9.988, "C6C8_dist": 11.180, "CNNC_torsion": 174.876, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N2(amino)[3.48]", "interBase_angle": 7.910, "planarity": 0.148, "simple_Shear": 2.091, "simple_Stretch": 1.375, "simple_Buckle": -7.842, "simple_Propeller": -1.039, "bp_simpleParams": [ 2.091, 1.375, 0.952, -7.842, -1.039, 179.682 ], "bp_params": [ -0.907, 2.332, 0.952, -0.625, -7.885, 179.683 ], "frame": { "rmsd": null, "origin": [ 195.150, 228.836, 244.951 ], "x_axis": [ -0.815, -0.178, 0.551 ], "y_axis": [ -0.234, 0.972, -0.033 ], "z_axis": [ -0.530, -0.156, -0.834 ], "quaternion": [ -0.284, -0.108, 0.951, -0.050 ] } }, { "index": 508, "nt1": "///2/1245", "nt2": "///2/1254", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.045, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.583, "chi2": -160.980, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.034, "C1C1_dist": 10.531, "N1N9_dist": 8.849, "C6C8_dist": 9.783, "CNNC_torsion": 7.774, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 14.850, "planarity": 0.210, "simple_Shear": -0.166, "simple_Stretch": -0.221, "simple_Buckle": -14.805, "simple_Propeller": -1.167, "bp_simpleParams": [ -0.166, -0.221, -1.087, -14.805, -1.167, 1.002 ], "bp_params": [ -0.163, -0.223, -1.087, -14.791, -1.326, 0.994 ], "frame": { "rmsd": null, "origin": [ 191.613, 229.756, 239.772 ], "x_axis": [ 0.314, 0.891, 0.327 ], "y_axis": [ 0.939, -0.240, -0.246 ], "z_axis": [ -0.141, 0.384, -0.912 ], "quaternion": [ -0.201, 0.785, 0.583, 0.059 ] } }, { "index": 509, "nt1": "///2/1260", "nt2": "///2/1617", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -154.423, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.589, "chi2": -154.740, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 95.700, "C1C1_dist": 10.920, "N1N9_dist": 9.786, "C6C8_dist": 10.716, "CNNC_torsion": -123.056, "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.57]", "interBase_angle": 43.710, "planarity": 0.550, "simple_Shear": 2.305, "simple_Stretch": 4.128, "simple_Buckle": -23.375, "simple_Propeller": 36.934, "bp_simpleParams": [ 2.305, 4.128, 0.365, -23.375, 36.934, 90.779 ], "bp_params": [ -3.156, 3.520, 0.365, -42.622, -9.692, 86.929 ], "frame": { "rmsd": null, "origin": [ 194.068, 239.292, 268.677 ], "x_axis": [ -0.561, -0.260, 0.786 ], "y_axis": [ -0.253, -0.850, -0.461 ], "z_axis": [ 0.788, -0.458, 0.411 ], "quaternion": [ -0.002, 0.469, -0.274, 0.840 ] } }, { "index": 510, "nt1": "///2/1260", "nt2": "///2/1661", "bp": "A-A", "name": "--", "Saenger": "05-V", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -154.423, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.955, "chi2": 169.135, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 23.740, "C1C1_dist": 13.473, "N1N9_dist": 10.712, "C6C8_dist": 9.454, "CNNC_torsion": -150.997, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.71]", "interBase_angle": 50.126, "planarity": 0.597, "simple_Shear": -2.869, "simple_Stretch": 3.545, "simple_Buckle": 11.476, "simple_Propeller": 48.795, "bp_simpleParams": [ -2.869, 3.545, 2.299, 11.476, 48.795, -89.976 ], "bp_params": [ -4.177, 1.832, 2.299, -12.843, 48.453, -94.888 ], "frame": { "rmsd": null, "origin": [ 192.780, 236.560, 265.937 ], "x_axis": [ -0.208, -0.869, -0.449 ], "y_axis": [ 0.589, 0.255, -0.767 ], "z_axis": [ 0.781, -0.424, 0.459 ], "quaternion": [ 0.614, -0.140, 0.501, -0.594 ] } }, { "index": 511, "nt1": "///2/1261", "nt2": "///2/1618", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..-W", "intra_chain": true, "chi1": -162.446, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 89.640, "chi2": -167.338, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 23.993, "C1C1_dist": 9.087, "N1N9_dist": 7.795, "C6C8_dist": 8.610, "CNNC_torsion": 49.357, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[2.47]", "interBase_angle": 54.979, "planarity": 0.685, "simple_Shear": 6.085, "simple_Stretch": 0.806, "simple_Buckle": -46.539, "simple_Propeller": 29.271, "bp_simpleParams": [ 6.085, 0.806, 0.730, -46.539, 29.271, 19.643 ], "bp_params": [ 5.391, -2.935, 0.730, -21.199, 50.727, 21.398 ], "frame": { "rmsd": null, "origin": [ 197.330, 232.092, 266.486 ], "x_axis": [ -0.794, -0.236, -0.561 ], "y_axis": [ 0.429, 0.436, -0.791 ], "z_axis": [ 0.431, -0.869, -0.245 ], "quaternion": [ 0.315, 0.062, 0.787, -0.527 ] } }, { "index": 512, "nt1": "///2/1264", "nt2": "///2/1266", "bp": "C+C", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W+M", "intra_chain": true, "chi1": -136.830, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 96.955, "chi2": -169.948, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 32.875, "C1C1_dist": 8.817, "N1N9_dist": 7.890, "C6C8_dist": 8.044, "CNNC_torsion": 88.164, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.12]", "interBase_angle": 66.428, "planarity": 0.842, "simple_Shear": 0.058, "simple_Stretch": 4.901, "simple_Buckle": -48.507, "simple_Propeller": 45.384, "bp_simpleParams": [ 0.058, 4.901, -3.683, -48.507, 45.384, -38.152 ], "bp_params": [ 4.891, 0.314, -3.683, 41.332, 52.004, -40.017 ], "frame": { "rmsd": null, "origin": [ 202.447, 233.832, 253.337 ], "x_axis": [ -0.824, -0.274, 0.496 ], "y_axis": [ 0.127, -0.942, -0.309 ], "z_axis": [ 0.552, -0.192, 0.811 ], "quaternion": [ -0.106, 0.277, -0.132, 0.946 ] } }, { "index": 513, "nt1": "///2/1266", "nt2": "///2/1516", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.948, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.920, "chi2": 176.837, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.657, "C1C1_dist": 10.758, "N1N9_dist": 8.951, "C6C8_dist": 9.870, "CNNC_torsion": 8.120, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 10.133, "planarity": 0.134, "simple_Shear": 0.166, "simple_Stretch": -0.148, "simple_Buckle": 3.026, "simple_Propeller": 9.671, "bp_simpleParams": [ 0.166, -0.148, -0.166, 3.026, 9.671, -0.104 ], "bp_params": [ 0.164, -0.150, -0.166, 3.143, 9.633, -0.105 ], "frame": { "rmsd": null, "origin": [ 205.571, 234.279, 253.586 ], "x_axis": [ -0.437, -0.696, 0.570 ], "y_axis": [ 0.019, -0.640, -0.768 ], "z_axis": [ 0.899, -0.324, 0.293 ], "quaternion": [ -0.232, 0.477, -0.355, 0.770 ] } }, { "index": 514, "nt1": "///2/1267", "nt2": "///2/1515", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.892, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.378, "chi2": 174.914, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.829, "C1C1_dist": 11.484, "N1N9_dist": 9.277, "C6C8_dist": 9.666, "CNNC_torsion": 12.865, "hbonds_num": 2, "hbonds_desc": "N3-N1(imino)[3.21],N4(amino)-O6(carbonyl)[2.43]", "interBase_angle": 18.109, "planarity": 0.250, "simple_Shear": 0.387, "simple_Stretch": -0.079, "simple_Buckle": 14.796, "simple_Propeller": 10.440, "bp_simpleParams": [ 0.387, -0.079, -0.503, 14.796, 10.440, -23.386 ], "bp_params": [ 0.383, -0.095, -0.503, 15.240, 9.781, -23.269 ], "frame": { "rmsd": null, "origin": [ 208.735, 235.516, 255.699 ], "x_axis": [ -0.413, -0.911, -0.017 ], "y_axis": [ 0.319, -0.128, -0.939 ], "z_axis": [ 0.853, -0.393, 0.343 ], "quaternion": [ -0.448, 0.305, -0.485, 0.686 ] } }, { "index": 515, "nt1": "///2/1268", "nt2": "///2/1514", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.673, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.337, "chi2": -163.549, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.942, "C1C1_dist": 11.349, "N1N9_dist": 9.624, "C6C8_dist": 10.504, "CNNC_torsion": 4.833, "hbonds_num": 2, "hbonds_desc": "N3-N2(amino)[3.47],N4(amino)-O6(carbonyl)[3.60]", "interBase_angle": 23.900, "planarity": 0.262, "simple_Shear": -0.916, "simple_Stretch": 0.683, "simple_Buckle": 22.559, "simple_Propeller": -7.893, "bp_simpleParams": [ -0.916, 0.683, -0.970, 22.559, -7.893, -0.615 ], "bp_params": [ -0.982, 0.585, -0.970, 23.271, -5.447, -0.603 ], "frame": { "rmsd": null, "origin": [ 210.332, 233.666, 258.717 ], "x_axis": [ -0.403, -0.842, -0.357 ], "y_axis": [ 0.455, 0.154, -0.877 ], "z_axis": [ 0.794, -0.516, 0.321 ], "quaternion": [ 0.518, -0.174, 0.556, -0.627 ] } }, { "index": 516, "nt1": "///2/1269", "nt2": "///2/1298", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -170.567, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 112.193, "chi2": 126.648, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 38.262, "C1C1_dist": 10.717, "N1N9_dist": 10.129, "C6C8_dist": 11.473, "CNNC_torsion": 7.385, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O6(carbonyl)[2.79]", "interBase_angle": 27.090, "planarity": 0.548, "simple_Shear": 4.796, "simple_Stretch": 3.823, "simple_Buckle": -19.140, "simple_Propeller": -19.171, "bp_simpleParams": [ 4.796, 3.823, -1.692, -19.140, -19.171, 47.365 ], "bp_params": [ 6.103, 0.610, -1.692, -26.479, -5.721, 46.293 ], "frame": { "rmsd": null, "origin": [ 213.623, 231.263, 261.225 ], "x_axis": [ -0.573, -0.420, -0.704 ], "y_axis": [ 0.767, 0.029, -0.641 ], "z_axis": [ 0.290, -0.907, 0.305 ], "quaternion": [ -0.436, -0.152, -0.569, 0.680 ] } }, { "index": 517, "nt1": "///2/1269", "nt2": "///2/1513", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.567, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 65.807, "chi2": -165.803, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.194, "C1C1_dist": 11.255, "N1N9_dist": 10.077, "C6C8_dist": 11.490, "CNNC_torsion": 4.314, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.62]", "interBase_angle": 24.936, "planarity": 0.403, "simple_Shear": -0.315, "simple_Stretch": 1.904, "simple_Buckle": 24.850, "simple_Propeller": 2.073, "bp_simpleParams": [ -0.315, 1.904, -0.561, 24.850, 2.073, 24.473 ], "bp_params": [ -0.360, 1.896, -0.561, 24.798, 2.625, 23.925 ], "frame": { "rmsd": null, "origin": [ 211.360, 230.000, 259.048 ], "x_axis": [ -0.398, -0.429, -0.811 ], "y_axis": [ 0.648, 0.494, -0.579 ], "z_axis": [ 0.649, -0.756, 0.081 ], "quaternion": [ 0.542, 0.082, 0.673, -0.496 ] } }, { "index": 518, "nt1": "///2/1270", "nt2": "///2/1298", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -117.111, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 116.020, "chi2": 126.648, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 43.932, "C1C1_dist": 9.331, "N1N9_dist": 8.928, "C6C8_dist": 10.464, "CNNC_torsion": 13.724, "hbonds_num": 2, "hbonds_desc": "O4'-N2(amino)[3.98],N2(amino)-O6(carbonyl)[2.67]", "interBase_angle": 18.240, "planarity": 0.518, "simple_Shear": 4.259, "simple_Stretch": 2.776, "simple_Buckle": -10.105, "simple_Propeller": 15.185, "bp_simpleParams": [ 4.259, 2.776, 1.693, -10.105, 15.185, 61.402 ], "bp_params": [ 5.075, 0.292, 1.693, -1.192, 18.201, 62.038 ], "frame": { "rmsd": null, "origin": [ 214.321, 230.311, 261.846 ], "x_axis": [ -0.473, -0.247, -0.846 ], "y_axis": [ 0.881, -0.119, -0.457 ], "z_axis": [ 0.012, -0.962, 0.274 ], "quaternion": [ -0.413, -0.305, -0.520, 0.683 ] } }, { "index": 519, "nt1": "///2/1270", "nt2": "///2/1513", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -117.111, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 73.785, "chi2": -165.803, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 83.219, "C1C1_dist": 9.092, "N1N9_dist": 8.506, "C6C8_dist": 10.100, "CNNC_torsion": 5.002, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[2.28]", "interBase_angle": 55.178, "planarity": 0.578, "simple_Shear": -0.949, "simple_Stretch": 1.822, "simple_Buckle": 54.388, "simple_Propeller": 9.302, "bp_simpleParams": [ -0.949, 1.822, 1.366, 54.388, 9.302, 52.787 ], "bp_params": [ -1.088, 1.743, 1.366, 53.668, 12.817, 48.078 ], "frame": { "rmsd": null, "origin": [ 212.058, 229.048, 259.669 ], "x_axis": [ -0.338, -0.212, -0.917 ], "y_axis": [ 0.847, 0.357, -0.395 ], "z_axis": [ 0.411, -0.910, 0.059 ], "quaternion": [ 0.519, 0.248, 0.639, -0.510 ] } }, { "index": 520, "nt1": "///2/1271", "nt2": "///2/1512", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.130, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.930, "chi2": -157.795, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 77.058, "C1C1_dist": 8.230, "N1N9_dist": 6.972, "C6C8_dist": 8.271, "CNNC_torsion": -7.266, "hbonds_num": 2, "hbonds_desc": "N3*O2(carbonyl)[2.98],N4(amino)-N3[2.91]", "unusual_base2base_hbonds": 1, "interBase_angle": 42.739, "planarity": 0.449, "simple_Shear": -1.915, "simple_Stretch": -0.988, "simple_Buckle": 32.858, "simple_Propeller": -27.331, "bp_simpleParams": [ -1.915, -0.988, -0.471, 32.858, -27.331, 20.994 ], "bp_params": [ -1.635, -1.404, -0.471, 38.373, -18.817, 20.147 ], "frame": { "rmsd": null, "origin": [ 212.556, 225.561, 261.191 ], "x_axis": [ -0.087, 0.122, -0.989 ], "y_axis": [ 0.977, 0.207, -0.060 ], "z_axis": [ 0.197, -0.971, -0.137 ], "quaternion": [ 0.496, 0.459, 0.598, -0.431 ] } }, { "index": 521, "nt1": "///2/1272", "nt2": "///2/1511", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.126, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 30.758, "chi2": -161.544, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 89.895, "C1C1_dist": 10.405, "N1N9_dist": 9.158, "C6C8_dist": 10.289, "CNNC_torsion": -13.149, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O2(carbonyl)[3.63]", "interBase_angle": 5.345, "planarity": 0.188, "simple_Shear": -4.902, "simple_Stretch": 1.471, "simple_Buckle": -2.636, "simple_Propeller": 4.650, "bp_simpleParams": [ -4.902, 1.471, 1.106, -2.636, 4.650, 13.132 ], "bp_params": [ -4.995, -1.114, 1.106, -4.573, 2.768, 13.126 ], "frame": { "rmsd": null, "origin": [ 213.379, 220.455, 260.762 ], "x_axis": [ 0.166, 0.639, -0.751 ], "y_axis": [ 0.758, 0.404, 0.512 ], "z_axis": [ 0.631, -0.655, -0.417 ], "quaternion": [ 0.537, 0.543, 0.643, -0.056 ] } }, { "index": 522, "nt1": "///2/1273", "nt2": "///2/1508", "bp": "C-A", "name": "~rHoogsteen", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -174.333, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 26.370, "chi2": -105.145, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 12.548, "C1C1_dist": 9.928, "N1N9_dist": 7.245, "C6C8_dist": 6.186, "CNNC_torsion": 170.144, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.57],N3-N6(amino)[3.04],N4(amino)-N7[2.82]", "interBase_angle": 6.850, "planarity": 0.352, "simple_Shear": 3.363, "simple_Stretch": -0.044, "simple_Buckle": 5.922, "simple_Propeller": -3.442, "bp_simpleParams": [ 3.363, -0.044, -1.913, 5.922, -3.442, -92.064 ], "bp_params": [ 2.896, -1.711, -1.913, 3.427, -5.931, -92.115 ], "frame": { "rmsd": null, "origin": [ 214.884, 216.158, 257.112 ], "x_axis": [ 0.704, 0.518, 0.486 ], "y_axis": [ -0.101, -0.604, 0.790 ], "z_axis": [ 0.703, -0.605, -0.373 ], "quaternion": [ 0.426, 0.819, 0.127, 0.363 ] } }, { "index": 523, "nt1": "///2/1273", "nt2": "///2/1510", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.333, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 54.885, "chi2": -164.799, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.466, "C1C1_dist": 10.474, "N1N9_dist": 8.772, "C6C8_dist": 9.735, "CNNC_torsion": -9.053, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 3.452, "planarity": 0.278, "simple_Shear": 0.173, "simple_Stretch": -0.360, "simple_Buckle": 0.030, "simple_Propeller": 3.452, "bp_simpleParams": [ 0.173, -0.360, 1.180, 0.030, 3.452, 2.245 ], "bp_params": [ 0.168, -0.363, 1.180, 0.074, 3.451, 2.245 ], "frame": { "rmsd": null, "origin": [ 214.972, 218.303, 257.920 ], "x_axis": [ 0.581, 0.769, -0.267 ], "y_axis": [ 0.487, -0.066, 0.871 ], "z_axis": [ 0.652, -0.636, -0.413 ], "quaternion": [ 0.525, 0.718, 0.438, 0.134 ] } }, { "index": 524, "nt1": "///2/1276", "nt2": "///2/1321", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 177.769, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 10.281, "chi2": -163.625, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 96.855, "C1C1_dist": 9.537, "N1N9_dist": 8.349, "C6C8_dist": 8.839, "CNNC_torsion": 36.526, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.82],N6(amino)-O2'(hydroxyl)[2.84],N6(amino)-N3[2.82]", "interBase_angle": 4.549, "planarity": 0.121, "simple_Shear": -7.380, "simple_Stretch": 2.290, "simple_Buckle": -3.478, "simple_Propeller": -2.931, "bp_simpleParams": [ -7.380, 2.290, -0.472, -3.478, -2.931, -0.963 ], "bp_params": [ -6.608, -4.006, -0.472, -0.112, -4.547, -0.960 ], "frame": { "rmsd": null, "origin": [ 218.421, 202.731, 253.177 ], "x_axis": [ 0.527, 0.561, -0.638 ], "y_axis": [ -0.078, 0.780, 0.621 ], "z_axis": [ 0.846, -0.278, 0.454 ], "quaternion": [ 0.831, 0.270, 0.447, 0.192 ] } }, { "index": 525, "nt1": "///2/1277", "nt2": "///2/1320", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.921, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.395, "chi2": -174.658, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.175, "C1C1_dist": 10.693, "N1N9_dist": 8.923, "C6C8_dist": 9.861, "CNNC_torsion": 0.566, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 3.155, "planarity": 0.122, "simple_Shear": 0.177, "simple_Stretch": -0.174, "simple_Buckle": 0.215, "simple_Propeller": -3.147, "bp_simpleParams": [ 0.177, -0.174, -0.503, 0.215, -3.147, 0.830 ], "bp_params": [ 0.175, -0.176, -0.503, 0.175, -3.150, 0.826 ], "frame": { "rmsd": null, "origin": [ 221.501, 201.444, 254.523 ], "x_axis": [ 0.134, 0.943, 0.306 ], "y_axis": [ -0.546, -0.187, 0.816 ], "z_axis": [ 0.827, -0.277, 0.490 ], "quaternion": [ 0.599, 0.456, 0.217, 0.621 ] } }, { "index": 526, "nt1": "///2/1278", "nt2": "///2/1319", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.895, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.217, "chi2": -157.749, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.023, "C1C1_dist": 10.725, "N1N9_dist": 8.893, "C6C8_dist": 9.761, "CNNC_torsion": 11.685, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.84]", "interBase_angle": 11.289, "planarity": 0.164, "simple_Shear": 0.124, "simple_Stretch": -0.163, "simple_Buckle": -8.543, "simple_Propeller": 7.379, "bp_simpleParams": [ 0.124, -0.163, -0.636, -8.543, 7.379, -3.051 ], "bp_params": [ 0.122, -0.165, -0.636, -8.434, 7.504, -3.049 ], "frame": { "rmsd": null, "origin": [ 225.455, 199.845, 255.034 ], "x_axis": [ -0.280, 0.734, 0.618 ], "y_axis": [ -0.610, -0.634, 0.476 ], "z_axis": [ 0.741, -0.244, 0.625 ], "quaternion": [ 0.422, 0.427, 0.073, 0.797 ] } }, { "index": 527, "nt1": "///2/1279", "nt2": "///2/1318", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.201, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.629, "chi2": 177.897, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.222, "C1C1_dist": 10.787, "N1N9_dist": 8.964, "C6C8_dist": 9.881, "CNNC_torsion": 8.164, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 12.853, "planarity": 0.156, "simple_Shear": 0.198, "simple_Stretch": -0.136, "simple_Buckle": -2.595, "simple_Propeller": 12.588, "bp_simpleParams": [ 0.198, -0.136, 0.060, -2.595, 12.588, 0.342 ], "bp_params": [ 0.197, -0.138, 0.060, -2.416, 12.623, 0.344 ], "frame": { "rmsd": null, "origin": [ 228.399, 200.893, 257.105 ], "x_axis": [ -0.671, 0.249, 0.699 ], "y_axis": [ -0.362, -0.932, -0.016 ], "z_axis": [ 0.647, -0.264, 0.715 ], "quaternion": [ 0.168, 0.370, -0.077, 0.911 ] } }, { "index": 528, "nt1": "///2/1280", "nt2": "///2/1317", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.012, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.951, "chi2": -159.841, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.401, "C1C1_dist": 10.711, "N1N9_dist": 8.941, "C6C8_dist": 9.870, "CNNC_torsion": -7.319, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 12.385, "planarity": 0.139, "simple_Shear": -0.226, "simple_Stretch": -0.136, "simple_Buckle": -6.596, "simple_Propeller": -10.483, "bp_simpleParams": [ -0.226, -0.136, -0.157, -6.596, -10.483, 0.580 ], "bp_params": [ -0.224, -0.139, -0.157, -6.430, -10.585, 0.582 ], "frame": { "rmsd": null, "origin": [ 229.916, 201.504, 259.884 ], "x_axis": [ -0.936, -0.266, 0.231 ], "y_axis": [ 0.195, -0.938, -0.288 ], "z_axis": [ 0.293, -0.224, 0.929 ], "quaternion": [ -0.118, 0.134, -0.131, 0.975 ] } }, { "index": 529, "nt1": "///2/1281", "nt2": "///2/1316", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.533, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.620, "chi2": -164.852, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.039, "C1C1_dist": 10.709, "N1N9_dist": 8.923, "C6C8_dist": 9.837, "CNNC_torsion": 4.708, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 9.038, "planarity": 0.137, "simple_Shear": -0.170, "simple_Stretch": -0.183, "simple_Buckle": -8.912, "simple_Propeller": -1.505, "bp_simpleParams": [ -0.170, -0.183, -0.729, -8.912, -1.505, 0.076 ], "bp_params": [ -0.168, -0.185, -0.729, -8.895, -1.604, 0.076 ], "frame": { "rmsd": null, "origin": [ 229.937, 202.237, 263.794 ], "x_axis": [ -0.706, -0.708, 0.002 ], "y_axis": [ 0.661, -0.660, -0.356 ], "z_axis": [ 0.253, -0.250, 0.935 ], "quaternion": [ -0.377, 0.070, -0.167, 0.908 ] } }, { "index": 530, "nt1": "///2/1286", "nt2": "///2/1313", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -119.005, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 86.893, "chi2": -127.779, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 11.085, "C1C1_dist": 10.516, "N1N9_dist": 9.086, "C6C8_dist": 9.445, "CNNC_torsion": -80.980, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.78],N3-N6(amino)[2.99]", "interBase_angle": 5.431, "planarity": 0.206, "simple_Shear": 6.851, "simple_Stretch": 2.413, "simple_Buckle": 1.878, "simple_Propeller": 5.096, "bp_simpleParams": [ 6.851, 2.413, 0.954, 1.878, 5.096, -12.099 ], "bp_params": [ 6.578, -3.082, 0.954, 4.911, 2.319, -12.090 ], "frame": { "rmsd": null, "origin": [ 229.047, 202.094, 278.687 ], "x_axis": [ 0.192, 0.229, 0.954 ], "y_axis": [ 0.883, 0.384, -0.270 ], "z_axis": [ -0.428, 0.895, -0.129 ], "quaternion": [ 0.601, -0.484, -0.575, -0.272 ] } }, { "index": 531, "nt1": "///2/1287", "nt2": "///2/1312", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -150.869, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 6.103, "chi2": -109.002, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 85.461, "C1C1_dist": 10.355, "N1N9_dist": 8.868, "C6C8_dist": 9.129, "CNNC_torsion": -174.239, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.86],N6(amino)-N3[2.89]", "interBase_angle": 25.382, "planarity": 0.414, "simple_Shear": -6.780, "simple_Stretch": 2.403, "simple_Buckle": -12.228, "simple_Propeller": 22.242, "bp_simpleParams": [ -6.780, 2.403, -1.126, -12.228, 22.242, -19.527 ], "bp_params": [ -6.439, -3.207, -1.126, -24.468, 6.751, -19.125 ], "frame": { "rmsd": null, "origin": [ 226.902, 205.107, 277.482 ], "x_axis": [ 0.204, 0.271, 0.941 ], "y_axis": [ 0.760, 0.562, -0.327 ], "z_axis": [ -0.617, 0.781, -0.092 ], "quaternion": [ 0.647, -0.428, -0.602, -0.189 ] } }, { "index": 532, "nt1": "///2/1287", "nt2": "///2/1314", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -150.869, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.738, "chi2": 105.236, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 47.636, "C1C1_dist": 10.672, "N1N9_dist": 8.817, "C6C8_dist": 9.739, "CNNC_torsion": -9.560, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.86]", "interBase_angle": 20.478, "planarity": 0.260, "simple_Shear": 0.120, "simple_Stretch": -0.053, "simple_Buckle": 19.327, "simple_Propeller": -6.771, "bp_simpleParams": [ 0.120, -0.053, 0.072, 19.327, -6.771, 1.081 ], "bp_params": [ 0.120, -0.054, 0.072, 19.261, -6.954, 1.067 ], "frame": { "rmsd": null, "origin": [ 225.405, 202.859, 274.968 ], "x_axis": [ 0.099, 0.095, 0.991 ], "y_axis": [ 0.958, 0.258, -0.121 ], "z_axis": [ -0.267, 0.961, -0.065 ], "quaternion": [ 0.568, -0.476, -0.553, -0.380 ] } }, { "index": 533, "nt1": "///2/1287", "nt2": "///2/1315", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -150.869, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 81.826, "chi2": -153.113, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.908, "C1C1_dist": 6.790, "N1N9_dist": 5.743, "C6C8_dist": 7.570, "CNNC_torsion": -128.497, "hbonds_num": 1, "hbonds_desc": "N3-N3(imino)[2.48]", "interBase_angle": 65.142, "planarity": 1.001, "simple_Shear": 4.658, "simple_Stretch": -0.887, "simple_Buckle": -3.244, "simple_Propeller": 65.061, "bp_simpleParams": [ 4.658, -0.887, -3.159, -3.244, 65.061, -158.146 ], "bp_params": [ -3.355, -3.351, -3.159, 55.413, -34.247, -156.219 ], "frame": { "rmsd": null, "origin": [ 227.283, 203.678, 273.064 ], "x_axis": [ 0.973, 0.168, 0.158 ], "y_axis": [ 0.223, -0.501, -0.837 ], "z_axis": [ -0.062, 0.849, -0.525 ], "quaternion": [ -0.487, 0.866, 0.113, 0.028 ] } }, { "index": 534, "nt1": "///2/1288", "nt2": "///2/1311", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.770, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.986, "chi2": -145.672, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.963, "C1C1_dist": 8.665, "N1N9_dist": 6.859, "C6C8_dist": 7.826, "CNNC_torsion": 32.478, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N3[2.99],O4(carbonyl)-N4(amino)[2.81]", "interBase_angle": 23.364, "planarity": 0.507, "simple_Shear": 0.476, "simple_Stretch": -2.362, "simple_Buckle": -19.748, "simple_Propeller": 12.487, "bp_simpleParams": [ 0.476, -2.362, -1.870, -19.748, 12.487, -5.886 ], "bp_params": [ 0.387, -2.378, -1.870, -19.298, 13.171, -5.842 ], "frame": { "rmsd": null, "origin": [ 224.103, 209.457, 278.844 ], "x_axis": [ 0.630, 0.582, 0.514 ], "y_axis": [ 0.519, 0.178, -0.836 ], "z_axis": [ -0.578, 0.793, -0.190 ], "quaternion": [ 0.636, -0.641, -0.429, 0.025 ] } }, { "index": 535, "nt1": "///2/1289", "nt2": "///2/1310", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.277, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.115, "chi2": -165.882, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.576, "C1C1_dist": 8.429, "N1N9_dist": 6.956, "C6C8_dist": 8.113, "CNNC_torsion": -7.654, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N3(imino)[3.38],N3(imino)-O4(carbonyl)[3.13]", "interBase_angle": 45.909, "planarity": 0.471, "simple_Shear": 1.028, "simple_Stretch": -1.270, "simple_Buckle": -37.992, "simple_Propeller": -25.774, "bp_simpleParams": [ 1.028, -1.270, -0.537, -37.992, -25.774, 10.431 ], "bp_params": [ 0.837, -1.403, -0.537, -41.462, -19.713, 9.925 ], "frame": { "rmsd": null, "origin": [ 225.806, 214.054, 279.275 ], "x_axis": [ 0.961, -0.128, -0.244 ], "y_axis": [ -0.250, -0.029, -0.968 ], "z_axis": [ 0.117, 0.991, -0.060 ], "quaternion": [ 0.684, -0.716, 0.132, 0.044 ] } }, { "index": 536, "nt1": "///2/1290", "nt2": "///2/1309", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.901, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.200, "chi2": -171.822, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.807, "C1C1_dist": 11.105, "N1N9_dist": 8.932, "C6C8_dist": 9.207, "CNNC_torsion": 22.769, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.19],N1(imino)-N3[3.06]", "interBase_angle": 43.536, "planarity": 0.581, "simple_Shear": 0.537, "simple_Stretch": 0.093, "simple_Buckle": -41.917, "simple_Propeller": 11.761, "bp_simpleParams": [ 0.537, 0.093, -0.675, -41.917, 11.761, -29.744 ], "bp_params": [ 0.540, 0.071, -0.675, -41.561, 12.965, -28.081 ], "frame": { "rmsd": null, "origin": [ 225.057, 217.727, 281.356 ], "x_axis": [ 0.598, -0.193, -0.778 ], "y_axis": [ -0.781, 0.078, -0.620 ], "z_axis": [ 0.180, 0.978, -0.104 ], "quaternion": [ 0.627, -0.637, 0.382, 0.234 ] } }, { "index": 537, "nt1": "///2/1291", "nt2": "///2/1308", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -140.320, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.967, "chi2": -140.147, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.746, "C1C1_dist": 10.828, "N1N9_dist": 9.000, "C6C8_dist": 9.847, "CNNC_torsion": 4.930, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.91],N1-N3(imino)[2.91]", "interBase_angle": 5.260, "planarity": 0.119, "simple_Shear": 0.116, "simple_Stretch": -0.101, "simple_Buckle": -5.260, "simple_Propeller": 0.068, "bp_simpleParams": [ 0.116, -0.101, -0.650, -5.260, 0.068, -3.552 ], "bp_params": [ 0.115, -0.103, -0.650, -5.258, 0.155, -3.549 ], "frame": { "rmsd": null, "origin": [ 228.301, 220.266, 280.098 ], "x_axis": [ 0.329, 0.049, -0.943 ], "y_axis": [ -0.894, 0.338, -0.294 ], "z_axis": [ 0.304, 0.940, 0.155 ], "quaternion": [ 0.675, -0.457, 0.462, 0.350 ] } }, { "index": 538, "nt1": "///2/1292", "nt2": "///2/1307", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "--", "DSSR": "--", "intra_chain": true, "chi1": -158.683, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.390, "chi2": -119.629, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 91.905, "C1C1_dist": 10.741, "N1N9_dist": 9.429, "C6C8_dist": 9.994, "CNNC_torsion": -80.249, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O2(carbonyl)[3.29]", "interBase_angle": 19.253, "planarity": 0.252, "simple_Shear": -7.021, "simple_Stretch": 2.940, "simple_Buckle": -12.009, "simple_Propeller": 15.049, "bp_simpleParams": [ -7.021, 2.940, 0.684, -12.009, 15.049, -10.125 ], "bp_params": [ -7.042, -2.889, 0.684, -19.132, 2.161, -9.987 ], "frame": { "rmsd": null, "origin": [ 228.497, 225.413, 282.072 ], "x_axis": [ 0.434, -0.064, -0.899 ], "y_axis": [ -0.886, 0.150, -0.438 ], "z_axis": [ 0.163, 0.987, 0.008 ], "quaternion": [ 0.631, -0.565, 0.421, 0.326 ] } }, { "index": 539, "nt1": "///2/1293", "nt2": "///2/1306", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -25.531, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 19.748, "chi2": -168.452, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.189, "C1C1_dist": 9.736, "N1N9_dist": 7.705, "C6C8_dist": 8.388, "CNNC_torsion": -123.345, "hbonds_num": 1, "hbonds_desc": "N1-N3(imino)[2.77]", "interBase_angle": 26.793, "planarity": 0.621, "simple_Shear": 1.270, "simple_Stretch": -0.878, "simple_Buckle": -14.186, "simple_Propeller": 22.729, "bp_simpleParams": [ 1.270, -0.878, -1.977, -14.186, 22.729, 127.901 ], "bp_params": [ 1.031, 1.149, -1.977, -24.377, -11.117, 127.073 ], "frame": { "rmsd": null, "origin": [ 228.216, 228.570, 281.402 ], "x_axis": [ 0.372, -0.259, -0.891 ], "y_axis": [ 0.793, 0.588, 0.160 ], "z_axis": [ 0.482, -0.767, 0.424 ], "quaternion": [ 0.772, 0.300, 0.445, -0.341 ] } }, { "index": 540, "nt1": "///2/1294", "nt2": "///2/1305", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.900, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.901, "chi2": -159.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.479, "C1C1_dist": 10.764, "N1N9_dist": 8.918, "C6C8_dist": 9.765, "CNNC_torsion": 20.635, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 24.081, "planarity": 0.324, "simple_Shear": -0.066, "simple_Stretch": -0.174, "simple_Buckle": -16.502, "simple_Propeller": 17.538, "bp_simpleParams": [ -0.066, -0.174, -0.767, -16.502, 17.538, -3.440 ], "bp_params": [ -0.064, -0.175, -0.767, -16.721, 17.329, -3.443 ], "frame": { "rmsd": null, "origin": [ 227.826, 230.708, 276.668 ], "x_axis": [ -0.677, -0.727, 0.118 ], "y_axis": [ -0.465, 0.546, 0.696 ], "z_axis": [ -0.571, 0.416, -0.708 ], "quaternion": [ -0.201, -0.348, 0.856, 0.325 ] } }, { "index": 541, "nt1": "///2/1295", "nt2": "///2/1304", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.821, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.918, "chi2": -164.238, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.735, "C1C1_dist": 10.879, "N1N9_dist": 8.906, "C6C8_dist": 9.593, "CNNC_torsion": 28.648, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.86]", "interBase_angle": 25.824, "planarity": 0.376, "simple_Shear": 0.486, "simple_Stretch": -0.264, "simple_Buckle": -18.871, "simple_Propeller": 17.629, "bp_simpleParams": [ 0.486, -0.264, -1.320, -18.871, 17.629, -12.562 ], "bp_params": [ 0.475, -0.283, -1.320, -18.151, 18.369, -12.570 ], "frame": { "rmsd": null, "origin": [ 225.945, 231.396, 273.088 ], "x_axis": [ -0.434, -0.335, 0.836 ], "y_axis": [ -0.015, 0.931, 0.366 ], "z_axis": [ -0.901, 0.147, -0.409 ], "quaternion": [ 0.521, 0.105, -0.833, -0.154 ] } }, { "index": 542, "nt1": "///2/1296", "nt2": "///2/1303", "bp": "U+C", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W+M", "intra_chain": true, "chi1": -169.462, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 22.835, "chi2": 36.433, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 29.618, "C1C1_dist": 12.214, "N1N9_dist": 9.577, "C6C8_dist": 8.493, "CNNC_torsion": 64.489, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N4(amino)[3.15]", "interBase_angle": 45.348, "planarity": 0.587, "simple_Shear": -5.573, "simple_Stretch": 1.594, "simple_Buckle": -13.440, "simple_Propeller": 43.311, "bp_simpleParams": [ -5.573, 1.594, -2.082, -13.440, 43.311, -132.566 ], "bp_params": [ -2.515, 5.223, -2.082, 23.897, 38.541, -133.982 ], "frame": { "rmsd": null, "origin": [ 222.200, 230.662, 269.913 ], "x_axis": [ -0.056, 0.621, 0.782 ], "y_axis": [ 0.246, 0.767, -0.592 ], "z_axis": [ -0.968, 0.159, -0.196 ], "quaternion": [ 0.615, -0.305, -0.711, 0.153 ] } }, { "index": 543, "nt1": "///2/1297", "nt2": "///2/1301", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -164.105, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 72.635, "chi2": 62.399, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 36.739, "C1C1_dist": 10.638, "N1N9_dist": 9.272, "C6C8_dist": 10.903, "CNNC_torsion": -148.501, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N1[3.14]", "interBase_angle": 34.661, "planarity": 0.422, "simple_Shear": 3.788, "simple_Stretch": 2.214, "simple_Buckle": 12.683, "simple_Propeller": 32.258, "bp_simpleParams": [ 3.788, 2.214, -1.763, 12.683, 32.258, -152.238 ], "bp_params": [ 0.417, -4.368, -1.763, 24.134, -24.879, -152.250 ], "frame": { "rmsd": null, "origin": [ 220.499, 231.138, 270.936 ], "x_axis": [ 0.265, 0.906, -0.330 ], "y_axis": [ -0.075, -0.322, -0.944 ], "z_axis": [ -0.961, 0.275, -0.017 ], "quaternion": [ -0.481, 0.633, 0.328, -0.510 ] } }, { "index": 544, "nt1": "///2/1297", "nt2": "///2/1303", "bp": "U+C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -164.105, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 81.387, "chi2": 36.433, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 22.606, "C1C1_dist": 9.762, "N1N9_dist": 8.218, "C6C8_dist": 8.563, "CNNC_torsion": 8.413, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[2.45]", "interBase_angle": 48.351, "planarity": 0.580, "simple_Shear": -0.171, "simple_Stretch": 2.367, "simple_Buckle": -16.531, "simple_Propeller": 45.437, "bp_simpleParams": [ -0.171, 2.367, -0.900, -16.531, 45.437, -76.195 ], "bp_params": [ 2.351, 0.321, -0.900, 44.583, 18.712, -72.680 ], "frame": { "rmsd": null, "origin": [ 221.023, 230.696, 272.591 ], "x_axis": [ 0.060, 0.931, 0.361 ], "y_axis": [ 0.203, 0.343, -0.917 ], "z_axis": [ -0.977, 0.128, -0.168 ], "quaternion": [ 0.556, -0.471, -0.602, 0.328 ] } }, { "index": 545, "nt1": "///2/1302", "nt2": "///2/1307", "bp": "G+U", "name": "rWobble", "Saenger": "27-XXVII", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -112.903, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 10.670, "chi2": -119.629, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.667, "C1C1_dist": 11.467, "N1N9_dist": 8.943, "C6C8_dist": 9.127, "CNNC_torsion": -150.671, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.32],N1(imino)-O4(carbonyl)[2.89]", "interBase_angle": 19.940, "planarity": 0.337, "simple_Shear": -1.420, "simple_Stretch": -0.576, "simple_Buckle": 11.940, "simple_Propeller": 15.970, "bp_simpleParams": [ -1.420, -0.576, 1.333, 11.940, 15.970, 156.608 ], "bp_params": [ 0.771, -1.325, 1.333, -17.511, 9.539, 156.418 ], "frame": { "rmsd": null, "origin": [ 228.984, 224.266, 277.721 ], "x_axis": [ 0.961, -0.232, 0.153 ], "y_axis": [ -0.133, 0.100, 0.986 ], "z_axis": [ -0.244, -0.967, 0.066 ], "quaternion": [ 0.729, 0.670, -0.136, -0.034 ] } }, { "index": 546, "nt1": "///2/1323", "nt2": "///2/1505", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.070, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.202, "chi2": -161.548, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.966, "C1C1_dist": 9.050, "N1N9_dist": 7.330, "C6C8_dist": 8.295, "CNNC_torsion": -13.910, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O2(carbonyl)[3.43],O4(carbonyl)-N3(imino)[2.77]", "interBase_angle": 8.819, "planarity": 0.295, "simple_Shear": -2.038, "simple_Stretch": -1.707, "simple_Buckle": -3.780, "simple_Propeller": 7.968, "bp_simpleParams": [ -2.038, -1.707, 1.430, -3.780, 7.968, -2.431 ], "bp_params": [ -1.648, -2.086, 1.430, -5.319, 7.035, -2.433 ], "frame": { "rmsd": null, "origin": [ 215.140, 209.834, 250.236 ], "x_axis": [ 0.290, -0.335, -0.896 ], "y_axis": [ -0.402, -0.893, 0.203 ], "z_axis": [ -0.868, 0.302, -0.394 ], "quaternion": [ -0.031, 0.803, -0.230, -0.550 ] } }, { "index": 547, "nt1": "///2/1324", "nt2": "///2/1504", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.137, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.446, "chi2": -165.083, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.944, "C1C1_dist": 10.336, "N1N9_dist": 8.718, "C6C8_dist": 9.622, "CNNC_torsion": -6.235, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.88],N1(imino)-O2(carbonyl)[2.84]", "interBase_angle": 7.256, "planarity": 0.260, "simple_Shear": -2.750, "simple_Stretch": -0.071, "simple_Buckle": 2.842, "simple_Propeller": 6.676, "bp_simpleParams": [ -2.750, -0.071, 1.161, 2.842, 6.676, 1.587 ], "bp_params": [ -2.629, -0.811, 1.161, 0.932, 7.195, 1.590 ], "frame": { "rmsd": null, "origin": [ 213.135, 211.865, 248.016 ], "x_axis": [ 0.082, -0.751, -0.655 ], "y_axis": [ -0.493, -0.601, 0.628 ], "z_axis": [ -0.866, 0.272, -0.420 ], "quaternion": [ 0.123, 0.725, -0.429, -0.524 ] } }, { "index": 548, "nt1": "///2/1325", "nt2": "///2/1503", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.083, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.736, "chi2": -170.329, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.220, "C1C1_dist": 10.497, "N1N9_dist": 8.823, "C6C8_dist": 9.774, "CNNC_torsion": -8.426, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 7.235, "planarity": 0.245, "simple_Shear": -0.141, "simple_Stretch": -0.318, "simple_Buckle": 6.357, "simple_Propeller": 3.455, "bp_simpleParams": [ -0.141, -0.318, 1.231, 6.357, 3.455, 1.749 ], "bp_params": [ -0.139, -0.319, 1.231, 6.328, 3.508, 1.747 ], "frame": { "rmsd": null, "origin": [ 211.046, 212.699, 245.020 ], "x_axis": [ -0.189, -0.978, -0.089 ], "y_axis": [ -0.482, 0.013, 0.876 ], "z_axis": [ -0.855, 0.209, -0.474 ], "quaternion": [ -0.296, -0.564, 0.647, 0.419 ] } }, { "index": 549, "nt1": "///2/1327", "nt2": "///2/1502", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.992, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.986, "chi2": -170.734, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.620, "C1C1_dist": 10.550, "N1N9_dist": 8.980, "C6C8_dist": 10.101, "CNNC_torsion": -14.304, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.53],N1(imino)-N3[3.11],N2(amino)-O2(carbonyl)[2.55]", "interBase_angle": 11.357, "planarity": 0.194, "simple_Shear": -0.363, "simple_Stretch": 0.092, "simple_Buckle": 6.769, "simple_Propeller": -9.119, "bp_simpleParams": [ -0.363, 0.092, 0.909, 6.769, -9.119, 8.449 ], "bp_params": [ -0.366, 0.080, 0.909, 7.064, -8.892, 8.459 ], "frame": { "rmsd": null, "origin": [ 209.163, 213.241, 241.993 ], "x_axis": [ -0.457, -0.759, 0.464 ], "y_axis": [ -0.317, 0.626, 0.713 ], "z_axis": [ -0.831, 0.179, -0.526 ], "quaternion": [ -0.401, -0.333, 0.808, 0.276 ] } }, { "index": 550, "nt1": "///2/1328", "nt2": "///2/1501", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.331, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.767, "chi2": -174.548, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.677, "C1C1_dist": 10.638, "N1N9_dist": 8.929, "C6C8_dist": 9.894, "CNNC_torsion": -3.224, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 1.314, "planarity": 0.096, "simple_Shear": -0.187, "simple_Stretch": -0.140, "simple_Buckle": -0.235, "simple_Propeller": 1.293, "bp_simpleParams": [ -0.187, -0.140, 0.400, -0.235, 1.293, 1.603 ], "bp_params": [ -0.185, -0.143, 0.400, -0.254, 1.289, 1.603 ], "frame": { "rmsd": null, "origin": [ 207.068, 212.168, 238.991 ], "x_axis": [ -0.433, -0.263, 0.862 ], "y_axis": [ -0.055, 0.962, 0.266 ], "z_axis": [ -0.900, 0.068, -0.431 ], "quaternion": [ 0.524, 0.095, -0.841, -0.099 ] } }, { "index": 551, "nt1": "///2/1329", "nt2": "///2/1500", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.663, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.352, "chi2": -178.467, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 32.914, "C1C1_dist": 11.529, "N1N9_dist": 9.372, "C6C8_dist": 9.733, "CNNC_torsion": -15.352, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.79],N3(imino)-O6(carbonyl)[2.94]", "interBase_angle": 0.581, "planarity": 0.205, "simple_Shear": 1.784, "simple_Stretch": 0.069, "simple_Buckle": 0.313, "simple_Propeller": 0.490, "bp_simpleParams": [ 1.784, 0.069, 1.022, 0.313, 0.490, -24.995 ], "bp_params": [ 1.767, -0.252, 1.022, 0.396, 0.426, -24.995 ], "frame": { "rmsd": null, "origin": [ 204.303, 210.894, 236.194 ], "x_axis": [ -0.361, 0.406, 0.840 ], "y_axis": [ 0.194, 0.913, -0.358 ], "z_axis": [ -0.912, 0.034, -0.408 ], "quaternion": [ 0.535, -0.183, -0.819, 0.099 ] } }, { "index": 552, "nt1": "///2/1330", "nt2": "///2/1334", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -97.622, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 65.015, "chi2": -175.426, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 32.303, "C1C1_dist": 11.892, "N1N9_dist": 10.042, "C6C8_dist": 9.634, "CNNC_torsion": 11.093, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O6(carbonyl)[3.62],N2(amino)-N7[3.39]", "interBase_angle": 16.413, "planarity": 0.247, "simple_Shear": -2.685, "simple_Stretch": 3.774, "simple_Buckle": -10.051, "simple_Propeller": 12.976, "bp_simpleParams": [ -2.685, 3.774, 0.091, -10.051, 12.976, -81.252 ], "bp_params": [ 2.309, 4.015, 0.091, 7.610, 14.542, -81.584 ], "frame": { "rmsd": null, "origin": [ 193.624, 211.174, 239.669 ], "x_axis": [ 0.221, 0.930, 0.295 ], "y_axis": [ 0.346, 0.208, -0.915 ], "z_axis": [ -0.912, 0.304, -0.276 ], "quaternion": [ 0.537, -0.568, -0.562, 0.272 ] } }, { "index": 553, "nt1": "///2/1332", "nt2": "///2/1493", "bp": "A-C", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -145.280, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.960, "chi2": -124.667, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 16.250, "C1C1_dist": 11.183, "N1N9_dist": 8.361, "C6C8_dist": 7.093, "CNNC_torsion": 162.619, "hbonds_num": 2, "hbonds_desc": "N7-N4(amino)[2.70],N6(amino)-N3[2.94]", "interBase_angle": 11.798, "planarity": 0.125, "simple_Shear": -2.493, "simple_Stretch": 1.293, "simple_Buckle": 9.043, "simple_Propeller": 7.577, "bp_simpleParams": [ -2.493, 1.293, 0.278, 9.043, 7.577, -101.231 ], "bp_params": [ -2.804, 0.161, 0.278, 5.158, 10.610, -101.415 ], "frame": { "rmsd": null, "origin": [ 201.351, 208.695, 236.452 ], "x_axis": [ -0.165, 0.922, -0.350 ], "y_axis": [ 0.176, -0.321, -0.930 ], "z_axis": [ -0.970, -0.215, -0.109 ], "quaternion": [ 0.318, -0.562, -0.488, 0.587 ] } }, { "index": 554, "nt1": "///2/1334", "nt2": "///2/1496", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.426, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.581, "chi2": -161.407, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 32.235, "C1C1_dist": 12.263, "N1N9_dist": 10.128, "C6C8_dist": 10.271, "CNNC_torsion": 27.652, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O4(carbonyl)[3.03]", "interBase_angle": 39.155, "planarity": 0.487, "simple_Shear": 2.488, "simple_Stretch": 1.568, "simple_Buckle": -37.961, "simple_Propeller": -9.593, "bp_simpleParams": [ 2.488, 1.568, -0.887, -37.961, -9.593, -36.323 ], "bp_params": [ 2.823, 0.822, -0.887, -39.123, 1.565, -34.357 ], "frame": { "rmsd": null, "origin": [ 191.844, 209.149, 242.331 ], "x_axis": [ 0.388, 0.676, -0.626 ], "y_axis": [ -0.186, -0.608, -0.772 ], "z_axis": [ -0.903, 0.416, -0.110 ], "quaternion": [ -0.409, 0.726, 0.169, -0.527 ] } }, { "index": 555, "nt1": "///2/1335", "nt2": "///2/1492", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.389, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 35.699, "chi2": -157.412, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.468, "C1C1_dist": 10.873, "N1N9_dist": 9.027, "C6C8_dist": 9.736, "CNNC_torsion": 3.082, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.82],N1(imino)-O2(carbonyl)[3.03]", "interBase_angle": 3.779, "planarity": 0.054, "simple_Shear": -2.624, "simple_Stretch": 0.111, "simple_Buckle": -2.118, "simple_Propeller": 3.130, "bp_simpleParams": [ -2.624, 0.111, -0.205, -2.118, 3.130, -8.947 ], "bp_params": [ -2.563, -0.573, -0.205, -2.857, 2.474, -8.946 ], "frame": { "rmsd": null, "origin": [ 191.229, 212.458, 237.237 ], "x_axis": [ 0.364, 0.033, -0.931 ], "y_axis": [ -0.224, -0.967, -0.122 ], "z_axis": [ -0.904, 0.253, -0.345 ], "quaternion": [ -0.114, 0.818, -0.058, -0.561 ] } }, { "index": 556, "nt1": "///2/1335", "nt2": "///2/1495", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "t.H", "DSSR": "t.-M", "intra_chain": true, "chi1": -167.389, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 82.168, "chi2": -160.021, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 18.249, "C1C1_dist": 11.858, "N1N9_dist": 10.344, "C6C8_dist": 10.666, "CNNC_torsion": 90.083, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O6(carbonyl)[3.09]", "interBase_angle": 35.107, "planarity": 0.468, "simple_Shear": 6.751, "simple_Stretch": 3.744, "simple_Buckle": -34.564, "simple_Propeller": 6.152, "bp_simpleParams": [ 6.751, 3.744, -0.664, -34.564, 6.152, -17.607 ], "bp_params": [ 7.484, -1.893, -0.664, -21.126, 28.039, -17.853 ], "frame": { "rmsd": null, "origin": [ 189.703, 211.826, 242.080 ], "x_axis": [ 0.144, 0.030, -0.989 ], "y_axis": [ -0.399, -0.913, -0.086 ], "z_axis": [ -0.906, 0.407, -0.119 ], "quaternion": [ -0.167, 0.738, -0.125, -0.642 ] } }, { "index": 557, "nt1": "///2/1336", "nt2": "///2/1491", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.412, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.449, "chi2": -160.129, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.413, "C1C1_dist": 10.710, "N1N9_dist": 8.969, "C6C8_dist": 9.904, "CNNC_torsion": 3.288, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 4.606, "planarity": 0.062, "simple_Shear": 0.182, "simple_Stretch": -0.120, "simple_Buckle": 3.489, "simple_Propeller": 3.007, "bp_simpleParams": [ 0.182, -0.120, -0.200, 3.489, 3.007, 0.293 ], "bp_params": [ 0.180, -0.123, -0.200, 3.531, 2.958, 0.293 ], "frame": { "rmsd": null, "origin": [ 188.662, 214.100, 235.168 ], "x_axis": [ 0.180, -0.605, -0.776 ], "y_axis": [ -0.394, -0.767, 0.506 ], "z_axis": [ -0.901, 0.215, -0.376 ], "quaternion": [ 0.096, 0.762, -0.328, -0.550 ] } }, { "index": 558, "nt1": "///2/1337", "nt2": "///2/1490", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.663, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.113, "chi2": 179.665, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 52.506, "C1C1_dist": 10.703, "N1N9_dist": 8.958, "C6C8_dist": 9.899, "CNNC_torsion": -7.354, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 6.081, "planarity": 0.086, "simple_Shear": 0.209, "simple_Stretch": -0.128, "simple_Buckle": 1.106, "simple_Propeller": -5.980, "bp_simpleParams": [ 0.209, -0.128, 0.183, 1.106, -5.980, 0.686 ], "bp_params": [ 0.207, -0.131, 0.183, 1.010, -5.996, 0.687 ], "frame": { "rmsd": null, "origin": [ 186.768, 214.939, 232.136 ], "x_axis": [ 0.166, -0.960, -0.226 ], "y_axis": [ -0.480, -0.278, 0.832 ], "z_axis": [ -0.862, -0.030, -0.507 ], "quaternion": [ 0.308, 0.698, -0.515, -0.389 ] } }, { "index": 559, "nt1": "///2/1338", "nt2": "///2/1488", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.783, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.839, "chi2": -129.377, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 56.202, "C1C1_dist": 11.207, "N1N9_dist": 9.297, "C6C8_dist": 9.991, "CNNC_torsion": 17.988, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)*N3[3.26],O6(carbonyl)-N4(amino)[3.32]", "unusual_base2base_hbonds": 1, "interBase_angle": 14.483, "planarity": 0.238, "simple_Shear": -1.300, "simple_Stretch": 0.073, "simple_Buckle": -8.786, "simple_Propeller": 11.513, "bp_simpleParams": [ -1.300, 0.073, -1.020, -8.786, 11.513, -10.640 ], "bp_params": [ -1.298, -0.098, -1.020, -10.214, 10.268, -10.641 ], "frame": { "rmsd": null, "origin": [ 184.360, 215.140, 228.787 ], "x_axis": [ -0.074, -0.959, 0.274 ], "y_axis": [ -0.522, 0.272, 0.809 ], "z_axis": [ -0.850, -0.083, -0.520 ], "quaternion": [ -0.411, -0.542, 0.683, 0.265 ] } }, { "index": 560, "nt1": "///2/1340", "nt2": "///2/1486", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.958, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.754, "chi2": -169.061, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.207, "C1C1_dist": 11.321, "N1N9_dist": 9.699, "C6C8_dist": 10.665, "CNNC_torsion": 19.199, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N1[3.82]", "interBase_angle": 15.579, "planarity": 0.294, "simple_Shear": -1.107, "simple_Stretch": 0.726, "simple_Buckle": 13.751, "simple_Propeller": 7.321, "bp_simpleParams": [ -1.107, 0.726, -1.555, 13.751, 7.321, 0.269 ], "bp_params": [ -1.181, 0.597, -1.555, 12.851, 8.806, 0.268 ], "frame": { "rmsd": null, "origin": [ 179.353, 211.593, 224.323 ], "x_axis": [ -0.387, -0.324, 0.863 ], "y_axis": [ -0.268, 0.935, 0.231 ], "z_axis": [ -0.882, -0.142, -0.449 ], "quaternion": [ 0.524, 0.178, -0.832, -0.027 ] } }, { "index": 561, "nt1": "///2/1340", "nt2": "///2/1487", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.958, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 64.217, "chi2": -174.114, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 62.565, "C1C1_dist": 9.307, "N1N9_dist": 7.982, "C6C8_dist": 9.155, "CNNC_torsion": -3.787, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.82],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 16.796, "planarity": 0.514, "simple_Shear": 0.058, "simple_Stretch": -0.894, "simple_Buckle": 8.388, "simple_Propeller": 14.551, "bp_simpleParams": [ 0.058, -0.894, 1.819, 8.388, 14.551, 15.659 ], "bp_params": [ 0.055, -0.895, 1.819, 8.421, 14.532, 15.743 ], "frame": { "rmsd": null, "origin": [ 180.828, 212.715, 224.802 ], "x_axis": [ -0.378, -0.455, 0.807 ], "y_axis": [ -0.342, 0.878, 0.335 ], "z_axis": [ -0.860, -0.150, -0.487 ], "quaternion": [ 0.503, 0.241, -0.828, -0.056 ] } }, { "index": 562, "nt1": "///2/1341", "nt2": "///2/1485", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "--", "DSSR": "--", "intra_chain": true, "chi1": -133.864, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 13.853, "chi2": -173.140, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.856, "C1C1_dist": 13.387, "N1N9_dist": 10.511, "C6C8_dist": 9.262, "CNNC_torsion": -39.604, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[2.78]", "interBase_angle": 23.175, "planarity": 0.315, "simple_Shear": -6.744, "simple_Stretch": 2.017, "simple_Buckle": -21.804, "simple_Propeller": 7.851, "bp_simpleParams": [ -6.744, 2.017, 0.879, -21.804, 7.851, -166.339 ], "bp_params": [ -3.117, 6.312, 0.879, -9.176, 21.281, -166.528 ], "frame": { "rmsd": null, "origin": [ 176.257, 210.238, 223.328 ], "x_axis": [ 0.085, 0.807, -0.584 ], "y_axis": [ -0.412, 0.562, 0.717 ], "z_axis": [ 0.907, 0.179, 0.380 ], "quaternion": [ 0.712, 0.189, 0.524, 0.428 ] } }, { "index": 563, "nt1": "///2/1342", "nt2": "///2/1344", "bp": "U+A", "name": "--", "Saenger": "--", "LW": ".SW", "DSSR": ".m+W", "intra_chain": true, "chi1": -131.984, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 123.819, "chi2": -121.810, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 30.489, "C1C1_dist": 8.938, "N1N9_dist": 8.594, "C6C8_dist": 9.359, "CNNC_torsion": 86.798, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.59]", "interBase_angle": 56.570, "planarity": 0.715, "simple_Shear": 0.943, "simple_Stretch": 5.687, "simple_Buckle": -47.957, "simple_Propeller": -30.004, "bp_simpleParams": [ 0.943, 5.687, -1.425, -47.957, -30.004, -41.842 ], "bp_params": [ 5.226, -2.432, -1.425, -15.077, 54.524, -46.241 ], "frame": { "rmsd": null, "origin": [ 170.174, 210.946, 228.318 ], "x_axis": [ 0.187, 0.458, 0.869 ], "y_axis": [ -0.499, 0.806, -0.318 ], "z_axis": [ -0.846, -0.374, 0.379 ], "quaternion": [ 0.770, 0.018, -0.557, 0.311 ] } }, { "index": 564, "nt1": "///2/1345", "nt2": "///2/1385", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -159.650, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.864, "chi2": 170.062, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 102.827, "C1C1_dist": 7.630, "N1N9_dist": 7.007, "C6C8_dist": 8.194, "CNNC_torsion": 20.457, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N1(imino)[3.23]", "interBase_angle": 39.643, "planarity": 0.873, "simple_Shear": -4.222, "simple_Stretch": 0.286, "simple_Buckle": 36.117, "simple_Propeller": 16.344, "bp_simpleParams": [ -4.222, 0.286, 2.117, 36.117, 16.344, 62.806 ], "bp_params": [ -3.830, -1.799, 2.117, 23.967, 31.577, 63.686 ], "frame": { "rmsd": null, "origin": [ 164.504, 205.443, 222.552 ], "x_axis": [ -0.850, -0.527, -0.002 ], "y_axis": [ -0.446, 0.720, -0.531 ], "z_axis": [ 0.282, -0.450, -0.847 ], "quaternion": [ 0.077, -0.263, 0.924, -0.266 ] } }, { "index": 565, "nt1": "///2/1346", "nt2": "///2/1384", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.111, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.853, "chi2": -162.957, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.510, "C1C1_dist": 8.117, "N1N9_dist": 6.922, "C6C8_dist": 8.450, "CNNC_torsion": 2.411, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[3.04],N3(imino)-N3[3.19],O4(carbonyl)-N4(amino)[3.41]", "unusual_base2base_hbonds": 1, "interBase_angle": 12.825, "planarity": 0.266, "simple_Shear": 0.124, "simple_Stretch": -1.500, "simple_Buckle": 0.048, "simple_Propeller": 12.824, "bp_simpleParams": [ 0.124, -1.500, 0.941, 0.048, 12.824, 24.919 ], "bp_params": [ 0.105, -1.502, 0.941, 0.212, 12.823, 25.071 ], "frame": { "rmsd": null, "origin": [ 167.227, 202.526, 220.609 ], "x_axis": [ -0.912, 0.098, -0.399 ], "y_axis": [ 0.366, 0.632, -0.683 ], "z_axis": [ 0.185, -0.769, -0.612 ], "quaternion": [ 0.164, 0.131, 0.888, -0.409 ] } }, { "index": 566, "nt1": "///2/1347", "nt2": "///2/1382", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -148.823, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.089, "chi2": -178.567, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.982, "C1C1_dist": 10.650, "N1N9_dist": 8.915, "C6C8_dist": 9.825, "CNNC_torsion": 7.977, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 10.111, "planarity": 0.160, "simple_Shear": -0.106, "simple_Stretch": -0.118, "simple_Buckle": 9.887, "simple_Propeller": 2.116, "bp_simpleParams": [ -0.106, -0.118, -0.808, 9.887, 2.116, -1.168 ], "bp_params": [ -0.104, -0.120, -0.808, 9.856, 2.258, -1.164 ], "frame": { "rmsd": null, "origin": [ 165.743, 197.457, 217.583 ], "x_axis": [ -0.434, 0.542, -0.720 ], "y_axis": [ 0.887, 0.397, -0.236 ], "z_axis": [ 0.158, -0.741, -0.653 ], "quaternion": [ 0.278, 0.453, 0.788, -0.310 ] } }, { "index": 567, "nt1": "///2/1348", "nt2": "///2/1381", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 12.529, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 28.443, "chi2": -163.571, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.397, "C1C1_dist": 11.793, "N1N9_dist": 9.926, "C6C8_dist": 9.776, "CNNC_torsion": 13.609, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.16],O6(carbonyl)-N1(imino)[2.82]", "interBase_angle": 28.009, "planarity": 0.383, "simple_Shear": -2.120, "simple_Stretch": 3.031, "simple_Buckle": -10.438, "simple_Propeller": -25.991, "bp_simpleParams": [ -2.120, 3.031, -0.215, -10.438, -25.991, 91.021 ], "bp_params": [ -2.263, -2.926, -0.215, 27.930, -2.094, 89.312 ], "frame": { "rmsd": null, "origin": [ 165.259, 195.485, 214.255 ], "x_axis": [ -0.865, 0.330, -0.378 ], "y_axis": [ -0.495, -0.680, 0.541 ], "z_axis": [ -0.078, 0.655, 0.752 ], "quaternion": [ 0.227, -0.126, 0.329, 0.908 ] } }, { "index": 568, "nt1": "///2/1349", "nt2": "///2/1380", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 167.349, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 52.266, "chi2": -160.407, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.200, "C1C1_dist": 10.563, "N1N9_dist": 8.732, "C6C8_dist": 9.607, "CNNC_torsion": -6.886, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.85],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 18.908, "planarity": 0.382, "simple_Shear": -0.137, "simple_Stretch": -0.288, "simple_Buckle": -18.868, "simple_Propeller": 1.225, "bp_simpleParams": [ -0.137, -0.288, 0.709, -18.868, 1.225, -0.200 ], "bp_params": [ -0.134, -0.289, 0.709, -18.879, 1.043, -0.197 ], "frame": { "rmsd": null, "origin": [ 163.689, 191.764, 212.330 ], "x_axis": [ 0.394, 0.885, -0.248 ], "y_axis": [ 0.819, -0.215, 0.532 ], "z_axis": [ 0.418, -0.413, -0.809 ], "quaternion": [ 0.304, 0.777, 0.548, 0.055 ] } }, { "index": 569, "nt1": "///2/1350", "nt2": "///2/1379", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 165.779, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 54.847, "chi2": -158.667, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.651, "C1C1_dist": 10.284, "N1N9_dist": 8.574, "C6C8_dist": 9.384, "CNNC_torsion": -6.465, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.01],O4(carbonyl)-N6(amino)[2.95]", "interBase_angle": 41.361, "planarity": 0.507, "simple_Shear": -0.049, "simple_Stretch": -0.431, "simple_Buckle": -31.980, "simple_Propeller": 26.230, "bp_simpleParams": [ -0.049, -0.431, 2.268, -31.980, 26.230, 7.442 ], "bp_params": [ -0.030, -0.433, 2.268, -33.213, 24.650, 7.315 ], "frame": { "rmsd": null, "origin": [ 164.714, 191.056, 208.363 ], "x_axis": [ 0.726, 0.637, 0.259 ], "y_axis": [ 0.333, -0.656, 0.678 ], "z_axis": [ 0.602, -0.406, -0.688 ], "quaternion": [ 0.309, 0.876, 0.277, 0.246 ] } }, { "index": 570, "nt1": "///2/1351", "nt2": "///2/1353", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": 117.757, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 54.582, "chi2": 102.902, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 75.646, "C1C1_dist": 9.503, "N1N9_dist": 8.310, "C6C8_dist": 7.584, "CNNC_torsion": 36.270, "hbonds_num": 2, "hbonds_desc": "N1(imino)-N7[3.23],N2(amino)-OP2[2.97]", "interBase_angle": 44.274, "planarity": 0.572, "simple_Shear": -2.698, "simple_Stretch": 5.549, "simple_Buckle": -8.343, "simple_Propeller": 43.481, "bp_simpleParams": [ -2.698, 5.549, -1.299, -8.343, 43.481, -40.975 ], "bp_params": [ 0.953, 6.096, -1.299, 18.323, 40.305, -42.950 ], "frame": { "rmsd": null, "origin": [ 169.878, 193.517, 201.441 ], "x_axis": [ 0.273, 0.239, 0.932 ], "y_axis": [ -0.647, -0.671, 0.362 ], "z_axis": [ 0.712, -0.702, -0.028 ], "quaternion": [ 0.379, 0.702, -0.145, 0.585 ] } }, { "index": 571, "nt1": "///2/1353", "nt2": "///2/1358", "bp": "A-U", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 102.902, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 22.923, "chi2": -160.678, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.890, "C1C1_dist": 11.600, "N1N9_dist": 9.434, "C6C8_dist": 9.756, "CNNC_torsion": 32.803, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.55],N6(amino)*N3(imino)[3.03]", "unusual_base2base_hbonds": 1, "interBase_angle": 26.782, "planarity": 0.361, "simple_Shear": -2.442, "simple_Stretch": 0.410, "simple_Buckle": -10.611, "simple_Propeller": 24.590, "bp_simpleParams": [ -2.442, 0.410, -1.004, -10.611, 24.590, -26.518 ], "bp_params": [ -2.463, -0.255, -1.004, -16.675, 20.957, -26.685 ], "frame": { "rmsd": null, "origin": [ 172.458, 193.986, 200.709 ], "x_axis": [ 0.069, -0.481, 0.874 ], "y_axis": [ -0.808, -0.541, -0.234 ], "z_axis": [ 0.585, -0.690, -0.426 ], "quaternion": [ 0.160, 0.713, -0.452, 0.511 ] } }, { "index": 572, "nt1": "///2/1354", "nt2": "///2/1358", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -111.171, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 56.571, "chi2": -160.678, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.748, "C1C1_dist": 9.318, "N1N9_dist": 7.913, "C6C8_dist": 9.074, "CNNC_torsion": 20.305, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)*O4(carbonyl)[2.95]", "interBase_angle": 41.449, "planarity": 0.790, "simple_Shear": -0.716, "simple_Stretch": -0.970, "simple_Buckle": 0.040, "simple_Propeller": 41.449, "bp_simpleParams": [ -0.716, -0.970, 1.638, 0.040, 41.449, 25.328 ], "bp_params": [ -0.645, -1.019, 1.638, -2.931, 41.345, 27.001 ], "frame": { "rmsd": null, "origin": [ 173.687, 192.678, 201.360 ], "x_axis": [ -0.383, -0.578, 0.720 ], "y_axis": [ -0.738, -0.277, -0.615 ], "z_axis": [ 0.555, -0.767, -0.321 ], "quaternion": [ -0.069, -0.551, 0.597, -0.579 ] } }, { "index": 573, "nt1": "///2/1360", "nt2": "///2/1362", "bp": "U+U", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": 112.676, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 71.508, "chi2": -106.866, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.716, "C1C1_dist": 8.848, "N1N9_dist": 7.472, "C6C8_dist": 7.254, "CNNC_torsion": 8.526, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O4(carbonyl)[3.83]", "interBase_angle": 10.131, "planarity": 0.127, "simple_Shear": -1.994, "simple_Stretch": 3.749, "simple_Buckle": 3.445, "simple_Propeller": 9.528, "bp_simpleParams": [ -1.994, 3.749, -0.841, 3.445, 9.528, -47.256 ], "bp_params": [ 2.268, 3.590, -0.841, 9.982, 1.735, -47.101 ], "frame": { "rmsd": null, "origin": [ 170.293, 200.502, 209.993 ], "x_axis": [ 0.572, -0.758, -0.313 ], "y_axis": [ -0.729, -0.296, -0.617 ], "z_axis": [ 0.375, 0.581, -0.722 ], "quaternion": [ -0.372, 0.805, -0.462, 0.019 ] } }, { "index": 574, "nt1": "///2/1363", "nt2": "///2/1375", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.189, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 52.670, "chi2": -167.635, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.347, "C1C1_dist": 10.715, "N1N9_dist": 8.905, "C6C8_dist": 9.800, "CNNC_torsion": 9.443, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 4.033, "planarity": 0.156, "simple_Shear": 0.149, "simple_Stretch": -0.246, "simple_Buckle": 3.404, "simple_Propeller": 2.162, "bp_simpleParams": [ 0.149, -0.246, -0.788, 3.404, 2.162, -1.333 ], "bp_params": [ 0.146, -0.248, -0.788, 3.427, 2.126, -1.333 ], "frame": { "rmsd": null, "origin": [ 155.367, 204.681, 208.877 ], "x_axis": [ 0.197, -0.601, 0.775 ], "y_axis": [ 0.978, 0.071, -0.194 ], "z_axis": [ 0.062, 0.796, 0.602 ], "quaternion": [ 0.684, -0.362, -0.261, -0.577 ] } }, { "index": 575, "nt1": "///2/1364", "nt2": "///2/1375", "bp": "U-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -159.660, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 8.570, "chi2": -167.635, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 89.953, "C1C1_dist": 10.824, "N1N9_dist": 9.455, "C6C8_dist": 9.883, "CNNC_torsion": 108.508, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N2(amino)[2.60]", "interBase_angle": 15.843, "planarity": 0.188, "simple_Shear": -7.423, "simple_Stretch": 3.410, "simple_Buckle": 8.620, "simple_Propeller": -13.292, "bp_simpleParams": [ -7.423, 3.410, -0.399, 8.620, -13.292, -13.592 ], "bp_params": [ -7.430, -3.395, -0.399, 15.693, -2.169, -13.468 ], "frame": { "rmsd": null, "origin": [ 153.468, 206.847, 205.973 ], "x_axis": [ 0.095, -0.572, 0.815 ], "y_axis": [ 0.994, 0.096, -0.048 ], "z_axis": [ -0.051, 0.815, 0.578 ], "quaternion": [ 0.665, -0.324, -0.325, -0.589 ] } }, { "index": 576, "nt1": "///2/1365", "nt2": "///2/1374", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.049, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.338, "chi2": -167.898, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.665, "C1C1_dist": 10.729, "N1N9_dist": 8.970, "C6C8_dist": 9.904, "CNNC_torsion": -0.981, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 2.124, "planarity": 0.026, "simple_Shear": -0.173, "simple_Stretch": -0.121, "simple_Buckle": 2.122, "simple_Propeller": 0.093, "bp_simpleParams": [ -0.173, -0.121, 0.047, 2.122, 0.093, 0.269 ], "bp_params": [ -0.172, -0.124, 0.047, 2.121, 0.120, 0.269 ], "frame": { "rmsd": null, "origin": [ 153.497, 209.015, 209.784 ], "x_axis": [ 0.911, -0.322, 0.259 ], "y_axis": [ 0.399, 0.524, -0.752 ], "z_axis": [ 0.107, 0.788, 0.606 ], "quaternion": [ 0.872, -0.442, -0.044, -0.207 ] } }, { "index": 577, "nt1": "///2/1366", "nt2": "///2/1373", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.854, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.776, "chi2": -169.705, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.692, "C1C1_dist": 10.658, "N1N9_dist": 8.911, "C6C8_dist": 9.850, "CNNC_torsion": 8.707, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 7.057, "planarity": 0.132, "simple_Shear": -0.181, "simple_Stretch": -0.180, "simple_Buckle": 2.454, "simple_Propeller": 6.616, "bp_simpleParams": [ -0.181, -0.180, -0.413, 2.454, 6.616, 0.114 ], "bp_params": [ -0.179, -0.182, -0.413, 2.365, 6.649, 0.114 ], "frame": { "rmsd": null, "origin": [ 153.564, 210.679, 213.029 ], "x_axis": [ 0.968, -0.054, -0.247 ], "y_axis": [ -0.159, 0.630, -0.761 ], "z_axis": [ 0.197, 0.775, 0.601 ], "quaternion": [ 0.894, -0.429, 0.124, 0.029 ] } }, { "index": 578, "nt1": "///2/1366", "nt2": "///2/1465", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -175.854, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.580, "chi2": -155.706, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 68.197, "C1C1_dist": 8.113, "N1N9_dist": 7.965, "C6C8_dist": 10.395, "CNNC_torsion": 165.419, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.10],N2(amino)-N3[3.10]", "interBase_angle": 18.577, "planarity": 0.284, "simple_Shear": 7.334, "simple_Stretch": 4.171, "simple_Buckle": -8.401, "simple_Propeller": -16.569, "bp_simpleParams": [ 7.334, 4.171, -0.304, -8.401, -16.569, -162.004 ], "bp_params": [ -2.948, -7.906, -0.304, -4.229, 18.090, -162.212 ], "frame": { "rmsd": null, "origin": [ 149.769, 212.525, 212.845 ], "x_axis": [ 0.038, 0.733, -0.679 ], "y_axis": [ -0.957, 0.223, 0.188 ], "z_axis": [ 0.289, 0.642, 0.710 ], "quaternion": [ 0.702, -0.162, 0.345, 0.602 ] } }, { "index": 579, "nt1": "///2/1367", "nt2": "///2/1372", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.242, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 68.839, "chi2": -155.236, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.071, "C1C1_dist": 8.687, "N1N9_dist": 7.170, "C6C8_dist": 8.366, "CNNC_torsion": 8.184, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N3(imino)[3.16],N3(imino)-O4(carbonyl)[2.92]", "interBase_angle": 12.337, "planarity": 0.200, "simple_Shear": 1.814, "simple_Stretch": -1.541, "simple_Buckle": 11.438, "simple_Propeller": 4.624, "bp_simpleParams": [ 1.814, -1.541, -0.827, 11.438, 4.624, 5.868 ], "bp_params": [ 1.503, -1.845, -0.827, 12.091, 2.452, 5.837 ], "frame": { "rmsd": null, "origin": [ 155.100, 212.266, 215.971 ], "x_axis": [ 0.668, 0.272, -0.692 ], "y_axis": [ -0.704, 0.531, -0.471 ], "z_axis": [ 0.240, 0.802, 0.547 ], "quaternion": [ 0.829, -0.384, 0.281, 0.295 ] } }, { "index": 580, "nt1": "///2/1389", "nt2": "///2/1481", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.961, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.608, "chi2": -169.019, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.972, "C1C1_dist": 10.630, "N1N9_dist": 8.821, "C6C8_dist": 9.737, "CNNC_torsion": -7.900, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 7.646, "planarity": 0.305, "simple_Shear": 0.178, "simple_Stretch": -0.322, "simple_Buckle": 5.879, "simple_Propeller": 4.888, "bp_simpleParams": [ 0.178, -0.322, 1.017, 5.879, 4.888, 1.196 ], "bp_params": [ 0.174, -0.324, 1.017, 5.946, 4.807, 1.196 ], "frame": { "rmsd": null, "origin": [ 162.680, 210.146, 237.521 ], "x_axis": [ -0.529, 0.631, -0.567 ], "y_axis": [ -0.505, -0.771, -0.387 ], "z_axis": [ -0.681, 0.082, 0.727 ], "quaternion": [ 0.327, -0.359, -0.088, 0.870 ] } }, { "index": 581, "nt1": "///2/1390", "nt2": "///2/1480", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.408, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.396, "chi2": 168.713, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.283, "C1C1_dist": 10.595, "N1N9_dist": 8.789, "C6C8_dist": 9.697, "CNNC_torsion": -7.103, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.90]", "interBase_angle": 4.417, "planarity": 0.222, "simple_Shear": -0.082, "simple_Stretch": -0.283, "simple_Buckle": 2.480, "simple_Propeller": 3.655, "bp_simpleParams": [ -0.082, -0.283, 0.933, 2.480, 3.655, -0.136 ], "bp_params": [ -0.078, -0.285, 0.933, 2.431, 3.688, -0.136 ], "frame": { "rmsd": null, "origin": [ 160.912, 212.259, 240.004 ], "x_axis": [ -0.678, -0.025, -0.735 ], "y_axis": [ -0.055, -0.995, 0.085 ], "z_axis": [ -0.733, 0.098, 0.673 ], "quaternion": [ 0.008, -0.401, 0.050, 0.914 ] } }, { "index": 582, "nt1": "///2/1391", "nt2": "///2/1479", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.016, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.158, "chi2": -170.682, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.411, "C1C1_dist": 10.656, "N1N9_dist": 8.890, "C6C8_dist": 9.823, "CNNC_torsion": 0.950, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 8.931, "planarity": 0.205, "simple_Shear": 0.172, "simple_Stretch": -0.208, "simple_Buckle": 3.141, "simple_Propeller": 8.361, "bp_simpleParams": [ 0.172, -0.208, 0.570, 3.141, 8.361, 1.335 ], "bp_params": [ 0.169, -0.210, 0.570, 3.247, 8.320, 1.338 ], "frame": { "rmsd": null, "origin": [ 158.814, 214.880, 241.862 ], "x_axis": [ -0.538, -0.561, -0.629 ], "y_axis": [ 0.287, -0.824, 0.489 ], "z_axis": [ -0.793, 0.083, 0.604 ], "quaternion": [ -0.246, -0.413, 0.166, 0.861 ] } }, { "index": 583, "nt1": "///2/1395", "nt2": "///2/1450", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -90.828, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 55.067, "chi2": -159.228, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.794, "C1C1_dist": 10.592, "N1N9_dist": 8.899, "C6C8_dist": 9.810, "CNNC_torsion": 5.877, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 21.207, "planarity": 0.251, "simple_Shear": 0.118, "simple_Stretch": -0.069, "simple_Buckle": 21.187, "simple_Propeller": 0.912, "bp_simpleParams": [ 0.118, -0.069, -0.610, 21.187, 0.912, -0.210 ], "bp_params": [ 0.118, -0.070, -0.610, 21.194, 0.731, -0.206 ], "frame": { "rmsd": null, "origin": [ 144.766, 210.774, 247.612 ], "x_axis": [ 0.976, -0.162, 0.147 ], "y_axis": [ 0.114, 0.951, 0.288 ], "z_axis": [ -0.186, -0.264, 0.946 ], "quaternion": [ 0.984, 0.140, -0.085, -0.070 ] } }, { "index": 584, "nt1": "///2/1396", "nt2": "///2/1449", "bp": "A+G", "name": "--", "Saenger": "09-IX", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 64.717, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 32.698, "chi2": -177.533, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.523, "C1C1_dist": 11.738, "N1N9_dist": 9.555, "C6C8_dist": 9.073, "CNNC_torsion": 12.179, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O6(carbonyl)[2.35]", "interBase_angle": 47.919, "planarity": 0.583, "simple_Shear": -3.332, "simple_Stretch": 1.959, "simple_Buckle": -13.878, "simple_Propeller": -45.865, "bp_simpleParams": [ -3.332, 1.959, 0.120, -13.878, -45.865, 104.231 ], "bp_params": [ -0.209, -3.859, 0.120, 46.987, 9.403, 99.563 ], "frame": { "rmsd": null, "origin": [ 144.617, 210.567, 251.945 ], "x_axis": [ 0.943, -0.315, -0.102 ], "y_axis": [ -0.331, -0.880, -0.341 ], "z_axis": [ 0.018, 0.356, -0.934 ], "quaternion": [ -0.180, 0.969, -0.167, -0.022 ] } }, { "index": 585, "nt1": "///2/1398", "nt2": "///2/1448", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.141, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.218, "chi2": -156.873, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.399, "C1C1_dist": 12.967, "N1N9_dist": 11.025, "C6C8_dist": 11.569, "CNNC_torsion": -6.213, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[3.37],N1(imino)-N1[3.19]", "interBase_angle": 15.122, "planarity": 0.264, "simple_Shear": -0.336, "simple_Stretch": 1.752, "simple_Buckle": 4.700, "simple_Propeller": -14.373, "bp_simpleParams": [ -0.336, 1.752, -0.768, 4.700, -14.373, -9.912 ], "bp_params": [ -0.400, 1.739, -0.768, 5.203, -14.199, -9.978 ], "frame": { "rmsd": null, "origin": [ 143.495, 207.016, 254.963 ], "x_axis": [ 0.505, 0.863, -0.017 ], "y_axis": [ -0.851, 0.501, 0.160 ], "z_axis": [ 0.147, -0.066, 0.987 ], "quaternion": [ 0.865, 0.065, 0.047, 0.495 ] } }, { "index": 586, "nt1": "///2/1399", "nt2": "///2/1447", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.084, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.812, "chi2": -157.257, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.992, "C1C1_dist": 11.195, "N1N9_dist": 9.496, "C6C8_dist": 10.468, "CNNC_torsion": 5.644, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.23],N3-N1(imino)[3.45],N4(amino)-O6(carbonyl)[3.51]", "interBase_angle": 1.355, "planarity": 0.131, "simple_Shear": -0.387, "simple_Stretch": 0.428, "simple_Buckle": 1.307, "simple_Propeller": 0.356, "bp_simpleParams": [ -0.387, 0.428, -0.672, 1.307, 0.356, 1.728 ], "bp_params": [ -0.406, 0.411, -0.672, 1.291, 0.412, 1.728 ], "frame": { "rmsd": null, "origin": [ 145.762, 207.045, 258.149 ], "x_axis": [ -0.038, 0.993, -0.114 ], "y_axis": [ -0.990, -0.023, 0.138 ], "z_axis": [ 0.134, 0.118, 0.984 ], "quaternion": [ 0.693, 0.007, 0.090, 0.715 ] } }, { "index": 587, "nt1": "///2/1401", "nt2": "///2/1445", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.141, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 76.884, "chi2": -150.401, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.952, "C1C1_dist": 11.193, "N1N9_dist": 9.854, "C6C8_dist": 11.060, "CNNC_torsion": 1.800, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 7.318, "planarity": 0.160, "simple_Shear": 2.686, "simple_Stretch": 1.525, "simple_Buckle": -3.977, "simple_Propeller": -6.143, "bp_simpleParams": [ 2.686, 1.525, -0.952, -3.977, -6.143, 14.065 ], "bp_params": [ 3.006, 0.712, -0.952, -5.536, -4.786, 14.061 ], "frame": { "rmsd": null, "origin": [ 146.796, 211.209, 263.310 ], "x_axis": [ -0.847, 0.016, -0.532 ], "y_axis": [ -0.383, -0.712, 0.589 ], "z_axis": [ -0.369, 0.702, 0.609 ], "quaternion": [ 0.112, -0.253, 0.363, 0.890 ] } }, { "index": 588, "nt1": "///2/1402", "nt2": "///2/1444", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.442, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.651, "chi2": -149.900, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.606, "C1C1_dist": 10.613, "N1N9_dist": 8.840, "C6C8_dist": 9.735, "CNNC_torsion": 6.926, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.92],N1-N3(imino)[2.89]", "interBase_angle": 3.600, "planarity": 0.231, "simple_Shear": 0.103, "simple_Stretch": -0.275, "simple_Buckle": -1.995, "simple_Propeller": -2.997, "bp_simpleParams": [ 0.103, -0.275, -1.130, -1.995, -2.997, -1.250 ], "bp_params": [ 0.098, -0.277, -1.130, -2.041, -2.965, -1.250 ], "frame": { "rmsd": null, "origin": [ 146.403, 214.664, 266.114 ], "x_axis": [ -0.904, -0.193, -0.382 ], "y_axis": [ -0.150, -0.692, 0.706 ], "z_axis": [ -0.401, 0.696, 0.596 ], "quaternion": [ -0.012, -0.219, 0.392, 0.893 ] } }, { "index": 589, "nt1": "///2/1405", "nt2": "///2/1441", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.655, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.495, "chi2": -138.623, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 53.347, "C1C1_dist": 10.639, "N1N9_dist": 8.969, "C6C8_dist": 9.880, "CNNC_torsion": -2.854, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.05],N1-N3(imino)[3.00]", "interBase_angle": 25.045, "planarity": 0.288, "simple_Shear": 0.284, "simple_Stretch": 0.146, "simple_Buckle": -23.595, "simple_Propeller": -8.397, "bp_simpleParams": [ 0.284, 0.146, -0.303, -23.595, -8.397, -0.669 ], "bp_params": [ 0.290, 0.135, -0.303, -23.946, -7.336, -0.656 ], "frame": { "rmsd": null, "origin": [ 145.099, 215.420, 269.717 ], "x_axis": [ -0.017, -0.620, 0.785 ], "y_axis": [ 0.865, 0.384, 0.322 ], "z_axis": [ -0.501, 0.684, 0.530 ], "quaternion": [ 0.689, -0.132, -0.467, -0.539 ] } }, { "index": 590, "nt1": "///2/1406", "nt2": "///2/1440", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.796, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.718, "chi2": -162.892, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.433, "C1C1_dist": 10.593, "N1N9_dist": 8.880, "C6C8_dist": 9.814, "CNNC_torsion": 6.910, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 8.821, "planarity": 0.192, "simple_Shear": -0.146, "simple_Stretch": -0.242, "simple_Buckle": -8.581, "simple_Propeller": -2.045, "bp_simpleParams": [ -0.146, -0.242, -1.035, -8.581, -2.045, 0.647 ], "bp_params": [ -0.144, -0.244, -1.035, -8.562, -2.122, 0.645 ], "frame": { "rmsd": null, "origin": [ 141.899, 216.069, 272.008 ], "x_axis": [ 0.299, -0.430, 0.852 ], "y_axis": [ 0.746, 0.662, 0.072 ], "z_axis": [ -0.595, 0.613, 0.519 ], "quaternion": [ 0.788, -0.172, -0.459, -0.373 ] } }, { "index": 591, "nt1": "///2/1406", "nt2": "///2/1442", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -166.796, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 108.812, "chi2": 154.553, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 42.056, "C1C1_dist": 10.334, "N1N9_dist": 9.715, "C6C8_dist": 11.384, "CNNC_torsion": 4.138, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[2.99]", "interBase_angle": 1.583, "planarity": 0.102, "simple_Shear": 4.216, "simple_Stretch": 3.204, "simple_Buckle": -1.490, "simple_Propeller": 0.536, "bp_simpleParams": [ 4.216, 3.204, -0.660, -1.490, 0.536, 46.584 ], "bp_params": [ 5.223, 0.872, -0.660, -1.069, 1.168, 46.584 ], "frame": { "rmsd": null, "origin": [ 141.673, 217.359, 269.622 ], "x_axis": [ -0.047, -0.618, 0.785 ], "y_axis": [ 0.833, 0.409, 0.372 ], "z_axis": [ -0.551, 0.671, 0.496 ], "quaternion": [ 0.681, -0.110, -0.490, -0.532 ] } }, { "index": 592, "nt1": "///2/1406", "nt2": "///2/1443", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -166.796, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 149.793, "chi2": 178.807, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 20.277, "C1C1_dist": 7.868, "N1N9_dist": 7.758, "C6C8_dist": 8.882, "CNNC_torsion": -15.991, "hbonds_num": 1, "hbonds_desc": "N3-N4(amino)[3.46]", "interBase_angle": 5.021, "planarity": 0.238, "simple_Shear": 6.887, "simple_Stretch": 3.667, "simple_Buckle": 3.505, "simple_Propeller": 3.595, "bp_simpleParams": [ 6.887, 3.667, 1.327, 3.505, 3.595, 62.169 ], "bp_params": [ 7.017, -3.411, 1.327, 4.969, -0.719, 62.122 ], "frame": { "rmsd": null, "origin": [ 144.409, 218.117, 269.555 ], "x_axis": [ -0.151, -0.678, 0.720 ], "y_axis": [ 0.848, 0.285, 0.447 ], "z_axis": [ -0.508, 0.678, 0.532 ], "quaternion": [ 0.645, -0.089, -0.476, -0.591 ] } }, { "index": 593, "nt1": "///2/1407", "nt2": "///2/1439", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.667, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.114, "chi2": -172.529, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.638, "C1C1_dist": 10.702, "N1N9_dist": 8.897, "C6C8_dist": 9.784, "CNNC_torsion": 7.537, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.89],O4(carbonyl)-N6(amino)[2.94]", "interBase_angle": 7.509, "planarity": 0.213, "simple_Shear": -0.063, "simple_Stretch": -0.166, "simple_Buckle": -7.163, "simple_Propeller": 2.254, "bp_simpleParams": [ -0.063, -0.166, -0.695, -7.163, 2.254, -2.115 ], "bp_params": [ -0.061, -0.167, -0.695, -7.190, 2.166, -2.111 ], "frame": { "rmsd": null, "origin": [ 138.898, 217.166, 273.970 ], "x_axis": [ 0.672, -0.017, 0.740 ], "y_axis": [ 0.496, 0.752, -0.433 ], "z_axis": [ -0.549, 0.659, 0.514 ], "quaternion": [ 0.857, -0.318, -0.376, -0.150 ] } }, { "index": 594, "nt1": "///2/1408", "nt2": "///2/1438", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.082, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.138, "chi2": -168.656, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.895, "C1C1_dist": 10.594, "N1N9_dist": 8.878, "C6C8_dist": 9.844, "CNNC_torsion": 5.555, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[3.00]", "interBase_angle": 8.522, "planarity": 0.115, "simple_Shear": -0.031, "simple_Stretch": -0.092, "simple_Buckle": -5.078, "simple_Propeller": 6.844, "bp_simpleParams": [ -0.031, -0.092, -0.123, -5.078, 6.844, 1.225 ], "bp_params": [ -0.030, -0.092, -0.123, -5.142, 6.795, 1.226 ], "frame": { "rmsd": null, "origin": [ 137.212, 218.471, 276.973 ], "x_axis": [ 0.880, 0.345, 0.326 ], "y_axis": [ 0.068, 0.589, -0.805 ], "z_axis": [ -0.470, 0.731, 0.495 ], "quaternion": [ 0.861, -0.446, -0.231, 0.080 ] } }, { "index": 595, "nt1": "///2/1409", "nt2": "///2/1432", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.725, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.746, "chi2": -165.507, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.432, "C1C1_dist": 10.673, "N1N9_dist": 8.879, "C6C8_dist": 9.786, "CNNC_torsion": -7.696, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.86]", "interBase_angle": 2.096, "planarity": 0.164, "simple_Shear": 0.039, "simple_Stretch": -0.179, "simple_Buckle": -2.080, "simple_Propeller": -0.257, "bp_simpleParams": [ 0.039, -0.179, 0.687, -2.080, -0.257, -1.026 ], "bp_params": [ 0.038, -0.180, 0.687, -2.082, -0.238, -1.026 ], "frame": { "rmsd": null, "origin": [ 137.574, 220.526, 279.302 ], "x_axis": [ 0.737, 0.477, -0.478 ], "y_axis": [ -0.616, 0.185, -0.766 ], "z_axis": [ -0.277, 0.859, 0.430 ], "quaternion": [ 0.767, -0.530, 0.066, 0.356 ] } }, { "index": 596, "nt1": "///2/1410", "nt2": "///2/1431", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.510, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.736, "chi2": -174.788, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.928, "C1C1_dist": 10.610, "N1N9_dist": 8.886, "C6C8_dist": 9.846, "CNNC_torsion": -3.077, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 3.825, "planarity": 0.159, "simple_Shear": 0.193, "simple_Stretch": -0.197, "simple_Buckle": 0.888, "simple_Propeller": 3.720, "bp_simpleParams": [ 0.193, -0.197, 0.609, 0.888, 3.720, 1.722 ], "bp_params": [ 0.190, -0.199, 0.609, 0.942, 3.707, 1.723 ], "frame": { "rmsd": null, "origin": [ 137.958, 223.142, 281.684 ], "x_axis": [ 0.221, 0.448, -0.866 ], "y_axis": [ -0.938, -0.145, -0.314 ], "z_axis": [ -0.266, 0.882, 0.388 ], "quaternion": [ 0.605, -0.494, 0.248, 0.573 ] } }, { "index": 597, "nt1": "///2/1411", "nt2": "///2/1430", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.904, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.705, "chi2": -161.874, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.077, "C1C1_dist": 10.649, "N1N9_dist": 8.928, "C6C8_dist": 9.885, "CNNC_torsion": -2.074, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 7.135, "planarity": 0.154, "simple_Shear": -0.200, "simple_Stretch": -0.151, "simple_Buckle": 1.021, "simple_Propeller": -7.062, "bp_simpleParams": [ -0.200, -0.151, -0.465, 1.021, -7.062, 1.899 ], "bp_params": [ -0.198, -0.154, -0.465, 1.129, -7.045, 1.903 ], "frame": { "rmsd": null, "origin": [ 139.466, 225.971, 284.296 ], "x_axis": [ -0.068, 0.145, -0.987 ], "y_axis": [ -0.965, -0.259, 0.028 ], "z_axis": [ -0.252, 0.955, 0.158 ], "quaternion": [ 0.456, -0.508, 0.403, 0.609 ] } }, { "index": 598, "nt1": "///2/1412", "nt2": "///2/1429", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.514, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.385, "chi2": -167.262, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.830, "C1C1_dist": 10.509, "N1N9_dist": 8.881, "C6C8_dist": 9.887, "CNNC_torsion": -1.127, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 6.685, "planarity": 0.158, "simple_Shear": 0.195, "simple_Stretch": -0.157, "simple_Buckle": 1.016, "simple_Propeller": -6.608, "bp_simpleParams": [ 0.195, -0.157, -0.583, 1.016, -6.608, 3.533 ], "bp_params": [ 0.193, -0.160, -0.583, 0.916, -6.622, 3.539 ], "frame": { "rmsd": null, "origin": [ 140.058, 229.559, 284.145 ], "x_axis": [ -0.608, -0.030, -0.794 ], "y_axis": [ -0.748, -0.315, 0.585 ], "z_axis": [ -0.267, 0.949, 0.169 ], "quaternion": [ 0.248, -0.367, 0.530, 0.723 ] } }, { "index": 599, "nt1": "///2/1413", "nt2": "///2/1427", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.127, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.498, "chi2": -156.927, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.755, "C1C1_dist": 10.644, "N1N9_dist": 8.912, "C6C8_dist": 9.868, "CNNC_torsion": 5.559, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 12.699, "planarity": 0.211, "simple_Shear": -0.210, "simple_Stretch": -0.134, "simple_Buckle": -7.342, "simple_Propeller": 10.362, "bp_simpleParams": [ -0.210, -0.134, 0.211, -7.342, 10.362, 2.074 ], "bp_params": [ -0.207, -0.138, 0.211, -7.530, 10.226, 2.077 ], "frame": { "rmsd": null, "origin": [ 139.005, 233.265, 283.177 ], "x_axis": [ -0.888, -0.386, -0.251 ], "y_axis": [ -0.105, -0.361, 0.927 ], "z_axis": [ -0.448, 0.849, 0.280 ], "quaternion": [ -0.088, -0.220, 0.558, 0.795 ] } }, { "index": 600, "nt1": "///2/1414", "nt2": "///2/1426", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.416, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.872, "chi2": -163.940, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.359, "C1C1_dist": 10.421, "N1N9_dist": 8.775, "C6C8_dist": 9.799, "CNNC_torsion": 12.684, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.02],N1-N3(imino)[2.81]", "interBase_angle": 20.918, "planarity": 0.259, "simple_Shear": 0.008, "simple_Stretch": -0.144, "simple_Buckle": -2.784, "simple_Propeller": 20.732, "bp_simpleParams": [ 0.008, -0.144, 0.266, -2.784, 20.732, 4.643 ], "bp_params": [ 0.007, -0.144, 0.266, -2.669, 20.747, 4.719 ], "frame": { "rmsd": null, "origin": [ 137.231, 236.441, 282.510 ], "x_axis": [ -0.732, -0.637, 0.242 ], "y_axis": [ 0.412, -0.130, 0.902 ], "z_axis": [ -0.543, 0.760, 0.357 ], "quaternion": [ -0.352, -0.101, 0.558, 0.745 ] } }, { "index": 601, "nt1": "///2/1415", "nt2": "///2/1425", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.778, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.634, "chi2": 178.231, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.640, "C1C1_dist": 10.595, "N1N9_dist": 8.959, "C6C8_dist": 10.030, "CNNC_torsion": 23.023, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.09],N3-N1(imino)[3.02],N4(amino)-O6(carbonyl)[3.37]", "interBase_angle": 32.692, "planarity": 0.457, "simple_Shear": 0.143, "simple_Stretch": 0.059, "simple_Buckle": 8.699, "simple_Propeller": 31.513, "bp_simpleParams": [ 0.143, 0.059, 0.111, 8.699, 31.513, 8.647 ], "bp_params": [ 0.144, 0.056, 0.111, 9.127, 31.392, 8.954 ], "frame": { "rmsd": null, "origin": [ 134.048, 238.593, 282.067 ], "x_axis": [ -0.355, -0.718, 0.598 ], "y_axis": [ 0.694, 0.225, 0.683 ], "z_axis": [ -0.626, 0.658, 0.419 ], "quaternion": [ 0.568, 0.011, -0.539, -0.622 ] } }, { "index": 602, "nt1": "///2/1416", "nt2": "///2/1424", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.033, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.004, "chi2": -160.301, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.890, "C1C1_dist": 10.682, "N1N9_dist": 8.906, "C6C8_dist": 9.801, "CNNC_torsion": 15.588, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 11.261, "planarity": 0.192, "simple_Shear": 0.111, "simple_Stretch": -0.238, "simple_Buckle": 4.874, "simple_Propeller": 10.151, "bp_simpleParams": [ 0.111, -0.238, -0.752, 4.874, 10.151, -2.175 ], "bp_params": [ 0.109, -0.239, -0.752, 4.955, 10.112, -2.181 ], "frame": { "rmsd": null, "origin": [ 130.408, 240.069, 282.136 ], "x_axis": [ 0.154, -0.605, 0.781 ], "y_axis": [ 0.617, 0.676, 0.402 ], "z_axis": [ -0.772, 0.420, 0.477 ], "quaternion": [ 0.760, -0.006, -0.511, -0.402 ] } }, { "index": 603, "nt1": "///2/1440", "nt2": "///2/1442", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -162.892, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 115.718, "chi2": 154.553, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 22.520, "C1C1_dist": 9.519, "N1N9_dist": 8.823, "C6C8_dist": 9.287, "CNNC_torsion": -2.157, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*O4(carbonyl)[2.99]", "interBase_angle": 8.808, "planarity": 0.093, "simple_Shear": 0.513, "simple_Stretch": 5.392, "simple_Buckle": 5.728, "simple_Propeller": 6.691, "bp_simpleParams": [ 0.513, 5.392, -0.561, 5.728, 6.691, -45.807 ], "bp_params": [ 5.290, -1.160, -0.561, 5.951, -6.493, -45.817 ], "frame": { "rmsd": null, "origin": [ 141.477, 217.726, 269.960 ], "x_axis": [ -0.025, -0.650, 0.759 ], "y_axis": [ -0.798, -0.445, -0.408 ], "z_axis": [ 0.603, -0.616, -0.508 ], "quaternion": [ 0.075, 0.694, -0.522, 0.491 ] } }, { "index": 604, "nt1": "///2/1441", "nt2": "///2/1443", "bp": "U+C", "name": "--", "Saenger": "--", "LW": "c.H", "DSSR": "c.+M", "intra_chain": true, "chi1": -138.623, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 108.358, "chi2": 178.807, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.557, "C1C1_dist": 9.749, "N1N9_dist": 9.024, "C6C8_dist": 9.303, "CNNC_torsion": -12.051, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.77]", "interBase_angle": 14.148, "planarity": 0.302, "simple_Shear": -0.377, "simple_Stretch": 5.616, "simple_Buckle": 8.431, "simple_Propeller": 11.362, "bp_simpleParams": [ -0.377, 5.616, 0.884, 8.431, 11.362, -40.885 ], "bp_params": [ 5.546, 0.966, 0.884, 12.191, -7.180, -40.747 ], "frame": { "rmsd": null, "origin": [ 145.845, 218.060, 268.551 ], "x_axis": [ -0.274, -0.759, 0.591 ], "y_axis": [ -0.771, -0.194, -0.607 ], "z_axis": [ 0.575, -0.622, -0.532 ], "quaternion": [ -0.006, -0.602, 0.635, -0.484 ] } }, { "index": 605, "nt1": "///2/1445", "nt2": "///2/1580", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm-M", "intra_chain": true, "chi1": -150.401, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 145.025, "chi2": -108.380, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 25.929, "C1C1_dist": 7.998, "N1N9_dist": 7.907, "C6C8_dist": 8.769, "CNNC_torsion": 36.377, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.24]", "interBase_angle": 39.159, "planarity": 0.697, "simple_Shear": 5.936, "simple_Stretch": 3.999, "simple_Buckle": 6.450, "simple_Propeller": 38.624, "bp_simpleParams": [ 5.936, 3.999, 1.941, 6.450, 38.624, 81.049 ], "bp_params": [ 6.699, -2.519, 1.941, 35.108, 17.345, 79.018 ], "frame": { "rmsd": null, "origin": [ 150.127, 214.737, 264.937 ], "x_axis": [ -0.852, -0.467, -0.238 ], "y_axis": [ -0.240, 0.750, -0.617 ], "z_axis": [ 0.466, -0.468, -0.751 ], "quaternion": [ 0.192, -0.193, 0.915, -0.296 ] } }, { "index": 606, "nt1": "///2/1451", "nt2": "///2/1474", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -163.049, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 103.118, "chi2": -122.464, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.828, "C1C1_dist": 10.094, "N1N9_dist": 9.155, "C6C8_dist": 10.182, "CNNC_torsion": -148.458, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N1[2.79],N3-N6(amino)[3.50]", "interBase_angle": 16.221, "planarity": 0.448, "simple_Shear": 2.392, "simple_Stretch": 3.887, "simple_Buckle": 15.932, "simple_Propeller": -3.050, "bp_simpleParams": [ 2.392, 3.887, 2.265, 15.932, -3.050, -84.483 ], "bp_params": [ 2.780, -3.619, 2.265, -8.508, -13.811, -84.741 ], "frame": { "rmsd": null, "origin": [ 145.032, 212.638, 245.358 ], "x_axis": [ -0.070, -0.997, 0.039 ], "y_axis": [ -0.960, 0.057, -0.274 ], "z_axis": [ 0.271, -0.057, -0.961 ], "quaternion": [ 0.080, -0.677, 0.723, -0.115 ] } }, { "index": 607, "nt1": "///2/1451", "nt2": "///2/1475", "bp": "G-G", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -163.049, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.398, "chi2": 51.507, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 8.185, "C1C1_dist": 10.891, "N1N9_dist": 9.530, "C6C8_dist": 9.682, "CNNC_torsion": -161.639, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O6(carbonyl)[3.90],N2(amino)-N7[3.86]", "interBase_angle": 34.053, "planarity": 0.439, "simple_Shear": 7.977, "simple_Stretch": 4.072, "simple_Buckle": 30.236, "simple_Propeller": -15.663, "bp_simpleParams": [ 7.977, 4.072, -0.553, 30.236, -15.663, -18.697 ], "bp_params": [ 7.946, -4.131, -0.553, 5.042, -33.677, -19.502 ], "frame": { "rmsd": null, "origin": [ 143.635, 213.394, 242.918 ], "x_axis": [ 0.417, -0.849, 0.326 ], "y_axis": [ -0.857, -0.486, -0.170 ], "z_axis": [ 0.302, -0.209, -0.930 ], "quaternion": [ 0.012, 0.842, -0.507, 0.187 ] } }, { "index": 608, "nt1": "///2/1452", "nt2": "///2/1473", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -117.171, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 8.675, "chi2": -176.060, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 112.712, "C1C1_dist": 9.460, "N1N9_dist": 8.726, "C6C8_dist": 9.735, "CNNC_torsion": -176.295, "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[2.84],N6(amino)-N3[3.10],N1-N2(amino)[2.84]", "interBase_angle": 8.358, "planarity": 0.144, "simple_Shear": 2.543, "simple_Stretch": 4.412, "simple_Buckle": -8.349, "simple_Propeller": 0.367, "bp_simpleParams": [ 2.543, 4.412, -0.255, -8.349, 0.367, 73.415 ], "bp_params": [ -2.898, 4.187, -0.255, -3.906, -7.389, 73.497 ], "frame": { "rmsd": null, "origin": [ 138.944, 219.174, 236.726 ], "x_axis": [ -0.836, 0.480, 0.266 ], "y_axis": [ -0.274, -0.786, 0.555 ], "z_axis": [ 0.475, 0.391, 0.788 ], "quaternion": [ 0.204, 0.201, 0.256, 0.923 ] } }, { "index": 609, "nt1": "///2/1453", "nt2": "///2/1476", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 98.710, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 53.626, "chi2": -72.208, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 80.057, "C1C1_dist": 9.730, "N1N9_dist": 8.611, "C6C8_dist": 10.187, "CNNC_torsion": -25.988, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N1[3.61]", "interBase_angle": 19.182, "planarity": 0.338, "simple_Shear": -1.509, "simple_Stretch": 0.697, "simple_Buckle": -10.880, "simple_Propeller": -15.798, "bp_simpleParams": [ -1.509, 0.697, 1.630, -10.880, -15.798, 31.670 ], "bp_params": [ -1.602, 0.444, 1.630, -8.158, -17.361, 31.943 ], "frame": { "rmsd": null, "origin": [ 139.543, 214.663, 234.696 ], "x_axis": [ -0.828, 0.182, 0.530 ], "y_axis": [ -0.204, -0.979, 0.018 ], "z_axis": [ 0.522, -0.093, 0.848 ], "quaternion": [ 0.101, 0.275, -0.020, 0.956 ] } }, { "index": 610, "nt1": "///2/1455", "nt2": "///2/1471", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 164.180, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 54.161, "chi2": -165.808, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.888, "C1C1_dist": 12.764, "N1N9_dist": 10.750, "C6C8_dist": 11.382, "CNNC_torsion": 13.352, "hbonds_num": 1, "hbonds_desc": "N1-N4(amino)[3.89]", "interBase_angle": 21.221, "planarity": 0.237, "simple_Shear": 1.412, "simple_Stretch": 1.594, "simple_Buckle": 4.692, "simple_Propeller": 20.695, "bp_simpleParams": [ 1.412, 1.594, 0.173, 4.692, 20.695, -11.311 ], "bp_params": [ 1.638, 1.361, 0.173, 7.738, 19.759, -11.454 ], "frame": { "rmsd": null, "origin": [ 135.665, 216.428, 231.851 ], "x_axis": [ 0.868, 0.406, -0.286 ], "y_axis": [ 0.431, -0.902, 0.028 ], "z_axis": [ -0.247, -0.147, -0.958 ], "quaternion": [ 0.045, 0.965, 0.217, -0.138 ] } }, { "index": 611, "nt1": "///2/1456", "nt2": "///2/1470", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.688, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.318, "chi2": -157.752, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.614, "C1C1_dist": 10.625, "N1N9_dist": 8.907, "C6C8_dist": 9.866, "CNNC_torsion": -2.084, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 9.374, "planarity": 0.146, "simple_Shear": -0.221, "simple_Stretch": -0.166, "simple_Buckle": -5.375, "simple_Propeller": -7.680, "bp_simpleParams": [ -0.221, -0.166, -0.595, -5.375, -7.680, 2.085 ], "bp_params": [ -0.218, -0.169, -0.595, -5.252, -7.764, 2.088 ], "frame": { "rmsd": null, "origin": [ 135.266, 218.367, 228.222 ], "x_axis": [ 0.990, -0.121, 0.067 ], "y_axis": [ -0.122, -0.992, 0.009 ], "z_axis": [ 0.065, -0.017, -0.998 ], "quaternion": [ 0.007, 0.998, -0.061, 0.033 ] } }, { "index": 612, "nt1": "///2/1457", "nt2": "///2/1469", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.478, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.196, "chi2": -158.011, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.197, "C1C1_dist": 10.736, "N1N9_dist": 8.904, "C6C8_dist": 9.754, "CNNC_torsion": 5.792, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[2.88]", "interBase_angle": 4.009, "planarity": 0.221, "simple_Shear": -0.149, "simple_Stretch": -0.225, "simple_Buckle": -2.709, "simple_Propeller": -2.956, "bp_simpleParams": [ -0.149, -0.225, -0.942, -2.709, -2.956, -3.207 ], "bp_params": [ -0.145, -0.228, -0.942, -2.651, -3.008, -3.208 ], "frame": { "rmsd": null, "origin": [ 135.121, 219.841, 224.757 ], "x_axis": [ 0.763, -0.641, 0.089 ], "y_axis": [ -0.643, -0.765, 0.002 ], "z_axis": [ 0.067, -0.059, -0.996 ], "quaternion": [ 0.016, 0.939, -0.342, 0.042 ] } }, { "index": 613, "nt1": "///2/1458", "nt2": "///2/1468", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.686, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.960, "chi2": -158.089, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.151, "C1C1_dist": 10.614, "N1N9_dist": 8.900, "C6C8_dist": 9.832, "CNNC_torsion": 5.414, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 8.923, "planarity": 0.141, "simple_Shear": -0.165, "simple_Stretch": -0.189, "simple_Buckle": -8.827, "simple_Propeller": -1.303, "bp_simpleParams": [ -0.165, -0.189, -0.755, -8.827, -1.303, 0.550 ], "bp_params": [ -0.162, -0.191, -0.755, -8.812, -1.401, 0.548 ], "frame": { "rmsd": null, "origin": [ 136.545, 219.150, 221.406 ], "x_axis": [ 0.262, -0.843, 0.471 ], "y_axis": [ -0.943, -0.327, -0.060 ], "z_axis": [ 0.205, -0.428, -0.880 ], "quaternion": [ 0.117, 0.786, -0.568, 0.215 ] } }, { "index": 614, "nt1": "///2/1459", "nt2": "///2/1467", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.751, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.665, "chi2": -162.501, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.843, "C1C1_dist": 10.672, "N1N9_dist": 8.926, "C6C8_dist": 9.842, "CNNC_torsion": 10.701, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 10.389, "planarity": 0.166, "simple_Shear": -0.116, "simple_Stretch": -0.187, "simple_Buckle": -8.848, "simple_Propeller": 5.445, "bp_simpleParams": [ -0.116, -0.187, -0.790, -8.848, 5.445, -0.876 ], "bp_params": [ -0.114, -0.188, -0.790, -8.899, 5.361, -0.874 ], "frame": { "rmsd": null, "origin": [ 138.644, 217.855, 218.647 ], "x_axis": [ -0.295, -0.855, 0.426 ], "y_axis": [ -0.944, 0.193, -0.267 ], "z_axis": [ 0.146, -0.481, -0.864 ], "quaternion": [ -0.091, -0.587, 0.767, -0.244 ] } }, { "index": 615, "nt1": "///2/1460", "nt2": "///2/1466", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.636, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.501, "chi2": -174.810, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.396, "C1C1_dist": 10.717, "N1N9_dist": 8.937, "C6C8_dist": 9.861, "CNNC_torsion": 11.871, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 14.366, "planarity": 0.179, "simple_Shear": 0.214, "simple_Stretch": -0.155, "simple_Buckle": -4.817, "simple_Propeller": 13.535, "bp_simpleParams": [ 0.214, -0.155, -0.196, -4.817, 13.535, -0.172 ], "bp_params": [ 0.212, -0.158, -0.196, -4.605, 13.608, -0.173 ], "frame": { "rmsd": null, "origin": [ 140.452, 215.397, 216.485 ], "x_axis": [ -0.781, -0.556, 0.286 ], "y_axis": [ -0.624, 0.665, -0.410 ], "z_axis": [ 0.037, -0.498, -0.866 ], "quaternion": [ -0.068, -0.324, 0.910, -0.250 ] } }, { "index": 616, "nt1": "///2/1461", "nt2": "///2/1465", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -171.351, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 97.664, "chi2": -155.706, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 9.975, "C1C1_dist": 9.369, "N1N9_dist": 8.226, "C6C8_dist": 8.614, "CNNC_torsion": -113.407, "hbonds_num": 3, "hbonds_desc": "N2(amino)-OP2[3.02],N2(amino)-N7[2.98],N3-N6(amino)[3.40]", "interBase_angle": 2.940, "planarity": 0.249, "simple_Shear": 7.758, "simple_Stretch": 2.458, "simple_Buckle": 2.373, "simple_Propeller": -1.736, "bp_simpleParams": [ 7.758, 2.458, 1.343, 2.373, -1.736, -7.070 ], "bp_params": [ 6.707, -4.609, 1.343, 0.089, -2.938, -7.072 ], "frame": { "rmsd": null, "origin": [ 142.337, 213.426, 213.961 ], "x_axis": [ -0.941, 0.307, 0.142 ], "y_axis": [ 0.173, 0.798, -0.578 ], "z_axis": [ -0.290, -0.519, -0.804 ], "quaternion": [ -0.115, 0.127, 0.941, -0.291 ] } }, { "index": 617, "nt1": "///2/1472", "nt2": "///2/1476", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -163.655, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.519, "chi2": -72.208, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 6.576, "C1C1_dist": 11.950, "N1N9_dist": 9.052, "C6C8_dist": 7.676, "CNNC_torsion": -169.903, "hbonds_num": 2, "hbonds_desc": "N3-N6(amino)[2.91],N4(amino)-N7[3.00]", "interBase_angle": 15.611, "planarity": 0.207, "simple_Shear": 1.496, "simple_Stretch": 1.694, "simple_Buckle": 0.093, "simple_Propeller": 15.610, "bp_simpleParams": [ 1.496, 1.694, 0.051, 0.093, 15.610, -103.964 ], "bp_params": [ 1.890, 1.240, 0.051, 4.207, 15.033, -104.405 ], "frame": { "rmsd": null, "origin": [ 137.747, 215.909, 234.672 ], "x_axis": [ -0.229, 0.972, -0.047 ], "y_axis": [ -0.883, -0.187, 0.431 ], "z_axis": [ 0.411, 0.140, 0.901 ], "quaternion": [ 0.609, 0.119, 0.188, 0.761 ] } }, { "index": 618, "nt1": "///2/1473", "nt2": "///2/1475", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -176.060, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 83.553, "chi2": 51.507, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 55.788, "C1C1_dist": 9.409, "N1N9_dist": 8.830, "C6C8_dist": 10.839, "CNNC_torsion": -175.084, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1(imino)[3.55],N3-N2(amino)[2.63]", "interBase_angle": 47.315, "planarity": 0.718, "simple_Shear": 6.414, "simple_Stretch": 4.414, "simple_Buckle": 44.203, "simple_Propeller": 16.875, "bp_simpleParams": [ 6.414, 4.414, -1.438, 44.203, 16.875, -152.098 ], "bp_params": [ -1.283, -7.680, -1.438, -19.225, -43.233, -153.584 ], "frame": { "rmsd": null, "origin": [ 139.329, 218.634, 238.534 ], "x_axis": [ -0.917, -0.331, 0.223 ], "y_axis": [ 0.398, -0.801, 0.447 ], "z_axis": [ 0.031, 0.499, 0.866 ], "quaternion": [ -0.192, 0.067, 0.250, 0.947 ] } }, { "index": 619, "nt1": "///2/1493", "nt2": "///2/1499", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -124.667, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 82.997, "chi2": -161.498, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.453, "C1C1_dist": 7.863, "N1N9_dist": 7.270, "C6C8_dist": 9.564, "CNNC_torsion": 170.159, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[3.20]", "interBase_angle": 16.685, "planarity": 0.310, "simple_Shear": 6.685, "simple_Stretch": 2.415, "simple_Buckle": 0.382, "simple_Propeller": -16.681, "bp_simpleParams": [ 6.685, 2.415, 1.791, 0.382, -16.681, -148.950 ], "bp_params": [ -2.859, -6.507, 1.791, -12.345, 11.225, -148.919 ], "frame": { "rmsd": null, "origin": [ 200.060, 211.071, 239.366 ], "x_axis": [ -0.226, 0.973, 0.049 ], "y_axis": [ 0.005, -0.049, 0.999 ], "z_axis": [ 0.974, 0.226, 0.006 ], "quaternion": [ 0.427, 0.452, 0.541, 0.566 ] } }, { "index": 620, "nt1": "///2/1521", "nt2": "///2/1522", "bp": "C-A", "name": "Platform", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -126.419, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 127.493, "chi2": 26.224, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 73.995, "C1C1_dist": 7.610, "N1N9_dist": 8.109, "C6C8_dist": 10.344, "CNNC_torsion": -13.696, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N1[3.18]", "interBase_angle": 26.853, "planarity": 0.376, "simple_Shear": 2.318, "simple_Stretch": 4.290, "simple_Buckle": 26.609, "simple_Propeller": -3.614, "bp_simpleParams": [ 2.318, 4.290, 1.129, 26.609, -3.614, 97.714 ], "bp_params": [ 3.583, 3.307, 1.129, 24.030, -11.985, 96.765 ], "frame": { "rmsd": null, "origin": [ 200.075, 246.908, 238.289 ], "x_axis": [ -0.004, -0.991, -0.135 ], "y_axis": [ -0.200, -0.131, 0.971 ], "z_axis": [ -0.980, 0.030, -0.197 ], "quaternion": [ 0.409, 0.576, -0.517, -0.484 ] } }, { "index": 621, "nt1": "///2/1529", "nt2": "///2/1665", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -163.262, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 131.531, "chi2": -115.855, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 99.686, "C1C1_dist": 4.978, "N1N9_dist": 6.413, "C6C8_dist": 8.535, "CNNC_torsion": 61.223, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.37]", "interBase_angle": 47.080, "planarity": 0.649, "simple_Shear": 0.435, "simple_Stretch": 7.414, "simple_Buckle": -47.077, "simple_Propeller": -0.548, "bp_simpleParams": [ 0.435, 7.414, 0.861, -47.077, -0.548, 169.111 ], "bp_params": [ 2.836, 6.864, 0.861, -44.657, 14.909, 168.318 ], "frame": { "rmsd": null, "origin": [ 179.848, 248.152, 246.598 ], "x_axis": [ 0.334, 0.885, -0.324 ], "y_axis": [ -0.511, -0.119, -0.851 ], "z_axis": [ -0.792, 0.450, 0.412 ], "quaternion": [ 0.638, -0.510, -0.183, 0.547 ] } }, { "index": 622, "nt1": "///2/1532", "nt2": "///2/1638", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.702, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.544, "chi2": -77.121, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 55.891, "C1C1_dist": 10.636, "N1N9_dist": 8.930, "C6C8_dist": 9.879, "CNNC_torsion": -8.452, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 4.219, "planarity": 0.100, "simple_Shear": 0.143, "simple_Stretch": -0.157, "simple_Buckle": -0.678, "simple_Propeller": -4.164, "bp_simpleParams": [ 0.143, -0.157, 0.414, -0.678, -4.164, 0.405 ], "bp_params": [ 0.141, -0.158, 0.414, -0.720, -4.157, 0.406 ], "frame": { "rmsd": null, "origin": [ 170.961, 254.588, 237.602 ], "x_axis": [ -0.324, -0.928, 0.181 ], "y_axis": [ -0.260, 0.271, 0.927 ], "z_axis": [ -0.909, 0.254, -0.330 ], "quaternion": [ -0.393, -0.428, 0.694, 0.425 ] } }, { "index": 623, "nt1": "///2/1533", "nt2": "///2/1602", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 143.476, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 13.573, "chi2": -166.891, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 29.126, "C1C1_dist": 10.252, "N1N9_dist": 7.581, "C6C8_dist": 6.637, "CNNC_torsion": 145.313, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.16],N6(amino)-O2(carbonyl)[2.68]", "interBase_angle": 12.506, "planarity": 0.325, "simple_Shear": -3.311, "simple_Stretch": 0.016, "simple_Buckle": 4.039, "simple_Propeller": -11.836, "bp_simpleParams": [ -3.311, 0.016, -1.584, 4.039, -11.836, -84.743 ], "bp_params": [ -2.942, -1.519, -1.584, 9.051, -8.629, -84.726 ], "frame": { "rmsd": null, "origin": [ 164.498, 263.856, 248.868 ], "x_axis": [ 0.945, 0.055, -0.323 ], "y_axis": [ -0.122, -0.856, -0.503 ], "z_axis": [ -0.304, 0.515, -0.802 ], "quaternion": [ -0.268, 0.949, -0.018, -0.165 ] } }, { "index": 624, "nt1": "///2/1534", "nt2": "///2/1598", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -141.145, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 35.595, "chi2": -95.752, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 79.153, "C1C1_dist": 8.773, "N1N9_dist": 7.611, "C6C8_dist": 9.301, "CNNC_torsion": -143.955, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.51]", "interBase_angle": 18.790, "planarity": 0.575, "simple_Shear": 4.534, "simple_Stretch": 1.130, "simple_Buckle": -8.586, "simple_Propeller": 16.714, "bp_simpleParams": [ 4.534, 1.130, -1.957, -8.586, 16.714, 127.737 ], "bp_params": [ 1.333, 4.478, -1.957, -18.755, 1.152, 127.127 ], "frame": { "rmsd": null, "origin": [ 156.646, 265.947, 250.589 ], "x_axis": [ 0.313, 0.784, 0.537 ], "y_axis": [ 0.785, 0.105, -0.611 ], "z_axis": [ -0.535, 0.612, -0.582 ], "quaternion": [ -0.457, 0.669, 0.586, 0.001 ] } }, { "index": 625, "nt1": "///2/1534", "nt2": "///2/1600", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "cH.", "DSSR": "cM+.", "intra_chain": true, "chi1": -141.145, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 14.100, "chi2": 63.866, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 14.162, "C1C1_dist": 13.648, "N1N9_dist": 10.790, "C6C8_dist": 9.702, "CNNC_torsion": -8.723, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O6(carbonyl)[2.55]", "interBase_angle": 23.853, "planarity": 0.310, "simple_Shear": -6.016, "simple_Stretch": 1.887, "simple_Buckle": 18.364, "simple_Propeller": 15.223, "bp_simpleParams": [ -6.016, 1.887, -0.036, 18.364, 15.223, 159.356 ], "bp_params": [ 2.134, -5.933, -0.036, -23.220, 5.458, 158.957 ], "frame": { "rmsd": null, "origin": [ 161.497, 266.283, 248.068 ], "x_axis": [ 0.046, 0.774, 0.631 ], "y_axis": [ 0.816, 0.335, -0.471 ], "z_axis": [ -0.576, 0.537, -0.617 ], "quaternion": [ -0.437, 0.576, 0.690, 0.024 ] } }, { "index": 626, "nt1": "///2/1536", "nt2": "///2/1597", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.366, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.225, "chi2": -154.894, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.019, "C1C1_dist": 10.523, "N1N9_dist": 8.897, "C6C8_dist": 9.890, "CNNC_torsion": 1.417, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.98],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 7.797, "planarity": 0.116, "simple_Shear": -0.235, "simple_Stretch": -0.137, "simple_Buckle": -7.273, "simple_Propeller": -2.809, "bp_simpleParams": [ -0.235, -0.137, -0.603, -7.273, -2.809, 2.908 ], "bp_params": [ -0.233, -0.142, -0.603, -7.223, -2.936, 2.903 ], "frame": { "rmsd": null, "origin": [ 157.570, 262.350, 252.300 ], "x_axis": [ -0.998, 0.053, -0.039 ], "y_axis": [ -0.021, -0.814, -0.581 ], "z_axis": [ -0.062, -0.579, 0.813 ], "quaternion": [ 0.019, -0.027, -0.305, 0.952 ] } }, { "index": 627, "nt1": "///2/1537", "nt2": "///2/1596", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.369, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.930, "chi2": -162.784, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.640, "C1C1_dist": 10.711, "N1N9_dist": 8.863, "C6C8_dist": 9.698, "CNNC_torsion": 9.448, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.88],N1-N3(imino)[2.90]", "interBase_angle": 5.698, "planarity": 0.239, "simple_Shear": 0.123, "simple_Stretch": -0.303, "simple_Buckle": -4.674, "simple_Propeller": -3.259, "bp_simpleParams": [ 0.123, -0.303, -1.223, -4.674, -3.259, -3.309 ], "bp_params": [ 0.118, -0.306, -1.223, -4.732, -3.175, -3.308 ], "frame": { "rmsd": null, "origin": [ 158.550, 261.443, 256.122 ], "x_axis": [ -0.841, -0.308, -0.444 ], "y_axis": [ 0.521, -0.680, -0.516 ], "z_axis": [ -0.143, -0.666, 0.732 ], "quaternion": [ -0.230, -0.163, -0.328, 0.902 ] } }, { "index": 628, "nt1": "///2/1538", "nt2": "///2/1595", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.093, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.605, "chi2": -177.523, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.984, "C1C1_dist": 11.331, "N1N9_dist": 9.062, "C6C8_dist": 9.506, "CNNC_torsion": 13.274, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[2.98]", "interBase_angle": 6.843, "planarity": 0.192, "simple_Shear": 0.911, "simple_Stretch": -0.344, "simple_Buckle": -6.403, "simple_Propeller": -2.414, "bp_simpleParams": [ 0.911, -0.344, -1.035, -6.403, -2.414, -26.484 ], "bp_params": [ 0.875, -0.427, -1.035, -6.601, -1.804, -26.445 ], "frame": { "rmsd": null, "origin": [ 157.490, 260.844, 259.831 ], "x_axis": [ -0.325, -0.635, -0.701 ], "y_axis": [ 0.935, -0.327, -0.137 ], "z_axis": [ -0.142, -0.700, 0.700 ], "quaternion": [ 0.512, 0.275, 0.273, -0.767 ] } }, { "index": 629, "nt1": "///2/1539", "nt2": "///2/1594", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.376, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.098, "chi2": -152.106, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.925, "C1C1_dist": 10.553, "N1N9_dist": 8.879, "C6C8_dist": 9.856, "CNNC_torsion": 4.052, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.87],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 0.805, "planarity": 0.126, "simple_Shear": -0.030, "simple_Stretch": -0.115, "simple_Buckle": -0.078, "simple_Propeller": -0.802, "bp_simpleParams": [ -0.030, -0.115, -0.592, -0.078, -0.802, 1.440 ], "bp_params": [ -0.029, -0.115, -0.592, -0.071, -0.802, 1.439 ], "frame": { "rmsd": null, "origin": [ 154.861, 257.984, 260.716 ], "x_axis": [ 0.113, -0.653, -0.749 ], "y_axis": [ 0.985, -0.025, 0.170 ], "z_axis": [ -0.129, -0.757, 0.640 ], "quaternion": [ 0.657, 0.353, 0.236, -0.623 ] } }, { "index": 630, "nt1": "///2/1540", "nt2": "///2/1593", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.488, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.939, "chi2": -166.540, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.591, "C1C1_dist": 10.681, "N1N9_dist": 8.955, "C6C8_dist": 9.909, "CNNC_torsion": -6.494, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 4.123, "planarity": 0.077, "simple_Shear": -0.194, "simple_Stretch": -0.122, "simple_Buckle": 2.991, "simple_Propeller": -2.838, "bp_simpleParams": [ -0.194, -0.122, 0.366, 2.991, -2.838, 1.103 ], "bp_params": [ -0.192, -0.125, 0.366, 3.032, -2.794, 1.103 ], "frame": { "rmsd": null, "origin": [ 153.862, 254.947, 261.155 ], "x_axis": [ 0.641, -0.239, -0.729 ], "y_axis": [ 0.760, 0.329, 0.560 ], "z_axis": [ 0.106, -0.913, 0.393 ], "quaternion": [ 0.769, 0.479, 0.272, -0.325 ] } }, { "index": 631, "nt1": "///2/1541", "nt2": "///2/1592", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.649, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.801, "chi2": -169.016, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.758, "C1C1_dist": 10.526, "N1N9_dist": 8.885, "C6C8_dist": 9.888, "CNNC_torsion": -6.500, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 9.589, "planarity": 0.155, "simple_Shear": -0.184, "simple_Stretch": -0.130, "simple_Buckle": 4.641, "simple_Propeller": -8.391, "bp_simpleParams": [ -0.184, -0.130, -0.151, 4.641, -8.391, 2.976 ], "bp_params": [ -0.181, -0.133, -0.151, 4.768, -8.320, 2.982 ], "frame": { "rmsd": null, "origin": [ 153.183, 251.430, 260.948 ], "x_axis": [ 0.950, 0.011, -0.313 ], "y_axis": [ 0.288, 0.364, 0.886 ], "z_axis": [ 0.124, -0.931, 0.342 ], "quaternion": [ 0.815, 0.558, 0.134, -0.085 ] } }, { "index": 632, "nt1": "///2/1542", "nt2": "///2/1591", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.280, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.605, "chi2": 169.463, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.350, "C1C1_dist": 10.829, "N1N9_dist": 8.831, "C6C8_dist": 9.470, "CNNC_torsion": -0.340, "hbonds_num": 1, "hbonds_desc": "N3-N4(amino)[3.19]", "interBase_angle": 18.766, "planarity": 0.232, "simple_Shear": 3.341, "simple_Stretch": -0.008, "simple_Buckle": -1.606, "simple_Propeller": -18.697, "bp_simpleParams": [ 3.341, -0.008, -0.705, -1.606, -18.697, -13.570 ], "bp_params": [ 3.142, -1.136, -0.705, -7.815, -17.062, -13.689 ], "frame": { "rmsd": null, "origin": [ 153.077, 247.423, 260.403 ], "x_axis": [ 0.817, 0.229, 0.529 ], "y_axis": [ -0.566, 0.145, 0.812 ], "z_axis": [ 0.109, -0.963, 0.248 ], "quaternion": [ 0.743, 0.597, -0.141, 0.267 ] } }, { "index": 633, "nt1": "///2/1544", "nt2": "///2/1589", "bp": "C-A", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -154.686, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.014, "chi2": -167.195, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 10.473, "C1C1_dist": 10.943, "N1N9_dist": 8.250, "C6C8_dist": 7.246, "CNNC_torsion": -146.678, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.17],N3-N6(amino)[3.17],N4(amino)-N7[3.28]", "interBase_angle": 19.006, "planarity": 0.266, "simple_Shear": 3.335, "simple_Stretch": 1.122, "simple_Buckle": 7.107, "simple_Propeller": 17.627, "bp_simpleParams": [ 3.335, 1.122, 0.279, 7.107, 17.627, -90.625 ], "bp_params": [ 3.452, -0.680, 0.279, 14.885, 11.818, -90.445 ], "frame": { "rmsd": null, "origin": [ 156.515, 240.175, 256.355 ], "x_axis": [ -0.197, 0.258, 0.946 ], "y_axis": [ -0.868, -0.494, -0.046 ], "z_axis": [ 0.455, -0.830, 0.322 ], "quaternion": [ 0.397, 0.494, -0.309, 0.709 ] } }, { "index": 634, "nt1": "///2/1545", "nt2": "///2/1654", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -157.427, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.563, "chi2": -175.466, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 103.965, "C1C1_dist": 10.163, "N1N9_dist": 9.710, "C6C8_dist": 11.430, "CNNC_torsion": 133.402, "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.91]", "interBase_angle": 60.592, "planarity": 0.830, "simple_Shear": 3.989, "simple_Stretch": 5.249, "simple_Buckle": -37.795, "simple_Propeller": -47.360, "bp_simpleParams": [ 3.989, 5.249, -0.653, -37.795, -47.360, 110.631 ], "bp_params": [ -1.973, 6.290, -0.653, 17.450, -58.025, 116.973 ], "frame": { "rmsd": null, "origin": [ 162.984, 234.799, 254.749 ], "x_axis": [ 0.669, 0.731, -0.137 ], "y_axis": [ -0.141, 0.305, 0.942 ], "z_axis": [ 0.730, -0.611, 0.307 ], "quaternion": [ 0.755, 0.514, 0.287, 0.288 ] } }, { "index": 635, "nt1": "///2/1546", "nt2": "///2/1655", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -145.056, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.423, "chi2": -161.929, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 105.795, "C1C1_dist": 9.147, "N1N9_dist": 8.890, "C6C8_dist": 10.635, "CNNC_torsion": 177.228, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.19]", "interBase_angle": 52.261, "planarity": 0.552, "simple_Shear": 5.847, "simple_Stretch": 5.517, "simple_Buckle": -43.480, "simple_Propeller": -28.995, "bp_simpleParams": [ 5.847, 5.517, -1.271, -43.480, -28.995, 111.075 ], "bp_params": [ 0.611, 8.016, -1.271, -13.336, -50.531, 115.968 ], "frame": { "rmsd": null, "origin": [ 164.939, 231.906, 255.933 ], "x_axis": [ 0.406, 0.825, 0.394 ], "y_axis": [ -0.491, -0.167, 0.855 ], "z_axis": [ 0.771, -0.540, 0.337 ], "quaternion": [ 0.628, 0.556, 0.150, 0.524 ] } }, { "index": 636, "nt1": "///2/1546", "nt2": "///2/1670", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -145.056, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 93.975, "chi2": -160.097, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 126.243, "C1C1_dist": 6.585, "N1N9_dist": 7.826, "C6C8_dist": 10.251, "CNNC_torsion": -85.807, "hbonds_num": 4, "hbonds_desc": "O2'(hydroxyl)-O3'[2.95],N2(amino)-O2'(hydroxyl)[3.10],N2(amino)-O2(carbonyl)[2.91],N3-O2'(hydroxyl)[2.88]", "interBase_angle": 49.464, "planarity": 0.645, "simple_Shear": -0.613, "simple_Stretch": 8.234, "simple_Buckle": -22.844, "simple_Propeller": -43.873, "bp_simpleParams": [ -0.613, 8.234, 1.230, -22.844, -43.873, 158.359 ], "bp_params": [ -2.894, 7.733, 1.230, -8.882, -48.660, 160.172 ], "frame": { "rmsd": null, "origin": [ 163.788, 233.142, 255.483 ], "x_axis": [ 0.575, 0.815, 0.079 ], "y_axis": [ -0.216, 0.058, 0.975 ], "z_axis": [ 0.789, -0.577, 0.209 ], "quaternion": [ 0.679, 0.572, 0.262, 0.380 ] } }, { "index": 637, "nt1": "///2/1547", "nt2": "///2/1586", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "intra_chain": true, "chi1": -162.662, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 25.915, "chi2": -135.528, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 25.256, "C1C1_dist": 12.195, "N1N9_dist": 9.533, "C6C8_dist": 7.349, "CNNC_torsion": -1.943, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[2.39]", "interBase_angle": 34.315, "planarity": 0.355, "simple_Shear": -0.015, "simple_Stretch": 5.397, "simple_Buckle": -13.511, "simple_Propeller": -31.543, "bp_simpleParams": [ -0.015, 5.397, -1.116, -13.511, -31.543, -159.523 ], "bp_params": [ 0.069, 5.397, -1.116, -13.759, -31.436, -160.123 ], "frame": { "rmsd": null, "origin": [ 166.269, 229.651, 261.974 ], "x_axis": [ -0.951, -0.302, -0.072 ], "y_axis": [ 0.183, -0.356, -0.916 ], "z_axis": [ 0.251, -0.884, 0.394 ], "quaternion": [ -0.147, 0.054, -0.548, 0.822 ] } }, { "index": 638, "nt1": "///2/1548", "nt2": "///2/1584", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..-W", "intra_chain": true, "chi1": 7.202, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 8.621, "chi2": -124.993, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 29.604, "C1C1_dist": 13.729, "N1N9_dist": 11.005, "C6C8_dist": 10.175, "CNNC_torsion": 13.713, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N1(imino)[2.74]", "interBase_angle": 16.241, "planarity": 0.237, "simple_Shear": -1.731, "simple_Stretch": 2.357, "simple_Buckle": 12.948, "simple_Propeller": -9.805, "bp_simpleParams": [ -1.731, 2.357, 0.307, 12.948, -9.805, -71.166 ], "bp_params": [ -2.207, 1.919, 0.307, 14.793, -6.706, -70.807 ], "frame": { "rmsd": null, "origin": [ 162.746, 225.926, 265.030 ], "x_axis": [ 0.685, 0.628, 0.370 ], "y_axis": [ 0.643, -0.280, -0.713 ], "z_axis": [ -0.344, 0.726, -0.595 ], "quaternion": [ -0.450, 0.800, 0.397, 0.008 ] } }, { "index": 639, "nt1": "///2/1550", "nt2": "///2/1559", "bp": "G-C", "name": "--", "Saenger": "--", "LW": ".SS", "DSSR": ".m-m", "intra_chain": true, "chi1": -162.533, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.434, "chi2": -140.443, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.891, "C1C1_dist": 5.274, "N1N9_dist": 6.109, "C6C8_dist": 8.258, "CNNC_torsion": 105.870, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[2.34]", "interBase_angle": 63.038, "planarity": 0.856, "simple_Shear": 0.038, "simple_Stretch": 7.558, "simple_Buckle": 42.771, "simple_Propeller": 46.307, "bp_simpleParams": [ 0.038, 7.558, -0.209, 42.771, 46.307, -173.734 ], "bp_params": [ 1.418, -7.424, -0.209, -32.798, -53.833, -174.114 ], "frame": { "rmsd": null, "origin": [ 168.708, 224.152, 273.777 ], "x_axis": [ 0.576, 0.140, -0.805 ], "y_axis": [ 0.736, 0.341, 0.585 ], "z_axis": [ 0.356, -0.930, 0.094 ], "quaternion": [ 0.709, 0.534, 0.410, -0.210 ] } }, { "index": 640, "nt1": "///2/1550", "nt2": "///2/1576", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -162.533, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.204, "chi2": -161.023, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.114, "C1C1_dist": 12.478, "N1N9_dist": 11.555, "C6C8_dist": 13.367, "CNNC_torsion": -177.145, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N2(amino)[2.98]", "interBase_angle": 45.965, "planarity": 0.659, "simple_Shear": 5.325, "simple_Stretch": 5.730, "simple_Buckle": 45.928, "simple_Propeller": 1.831, "bp_simpleParams": [ 5.325, 5.730, 0.150, 45.928, 1.831, -169.576 ], "bp_params": [ 1.897, -7.589, 0.150, -23.605, -39.440, -169.946 ], "frame": { "rmsd": null, "origin": [ 168.538, 224.682, 273.844 ], "x_axis": [ 0.597, 0.003, -0.802 ], "y_axis": [ 0.733, 0.404, 0.547 ], "z_axis": [ 0.326, -0.915, 0.239 ], "quaternion": [ 0.748, 0.488, 0.377, -0.244 ] } }, { "index": 641, "nt1": "///2/1550", "nt2": "///2/1577", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -162.533, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.582, "chi2": -154.739, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.936, "C1C1_dist": 8.353, "N1N9_dist": 7.938, "C6C8_dist": 10.000, "CNNC_torsion": -177.460, "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.19]", "interBase_angle": 46.623, "planarity": 0.806, "simple_Shear": 6.813, "simple_Stretch": 3.595, "simple_Buckle": 46.477, "simple_Propeller": 3.685, "bp_simpleParams": [ 6.813, 3.595, -2.844, 46.477, 3.685, 151.494 ], "bp_params": [ 2.370, 7.330, -2.844, 30.864, 34.944, 151.694 ], "frame": { "rmsd": null, "origin": [ 169.622, 223.543, 273.459 ], "x_axis": [ -0.783, -0.173, 0.598 ], "y_axis": [ -0.492, -0.416, -0.765 ], "z_axis": [ 0.381, -0.893, 0.240 ], "quaternion": [ 0.102, 0.313, -0.531, 0.781 ] } }, { "index": 642, "nt1": "///2/1550", "nt2": "///2/1582", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.533, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.048, "chi2": -141.349, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.900, "C1C1_dist": 10.631, "N1N9_dist": 8.874, "C6C8_dist": 9.772, "CNNC_torsion": 11.509, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 2.367, "planarity": 0.235, "simple_Shear": -0.131, "simple_Stretch": -0.311, "simple_Buckle": -0.140, "simple_Propeller": 2.363, "bp_simpleParams": [ -0.131, -0.311, -1.048, -0.140, 2.363, -1.349 ], "bp_params": [ -0.128, -0.312, -1.048, -0.160, 2.362, -1.348 ], "frame": { "rmsd": null, "origin": [ 166.564, 222.614, 271.216 ], "x_axis": [ -0.595, -0.621, -0.510 ], "y_axis": [ 0.761, -0.231, -0.606 ], "z_axis": [ 0.258, -0.749, 0.610 ], "quaternion": [ -0.443, -0.081, -0.434, 0.781 ] } }, { "index": 643, "nt1": "///2/1558", "nt2": "///2/1577", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.096, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.582, "chi2": -154.739, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.350, "C1C1_dist": 10.585, "N1N9_dist": 8.887, "C6C8_dist": 9.856, "CNNC_torsion": 1.546, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 4.992, "planarity": 0.197, "simple_Shear": 0.218, "simple_Stretch": -0.187, "simple_Buckle": -3.286, "simple_Propeller": -3.757, "bp_simpleParams": [ 0.218, -0.187, -0.677, -3.286, -3.757, 2.349 ], "bp_params": [ 0.214, -0.191, -0.677, -3.350, -3.700, 2.349 ], "frame": { "rmsd": null, "origin": [ 173.017, 223.670, 275.992 ], "x_axis": [ 0.429, 0.098, 0.898 ], "y_axis": [ 0.786, 0.448, -0.425 ], "z_axis": [ -0.444, 0.888, 0.116 ], "quaternion": [ 0.706, -0.465, -0.475, -0.244 ] } }, { "index": 644, "nt1": "///2/1559", "nt2": "///2/1576", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -140.443, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.103, "chi2": -161.023, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.935, "C1C1_dist": 10.718, "N1N9_dist": 8.920, "C6C8_dist": 9.767, "CNNC_torsion": 12.934, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 17.124, "planarity": 0.243, "simple_Shear": 0.035, "simple_Stretch": -0.221, "simple_Buckle": 15.768, "simple_Propeller": 6.678, "bp_simpleParams": [ 0.035, -0.221, -1.099, 15.768, 6.678, -3.521 ], "bp_params": [ 0.035, -0.221, -1.099, 15.800, 6.601, -3.494 ], "frame": { "rmsd": null, "origin": [ 170.898, 225.750, 276.597 ], "x_axis": [ 0.850, 0.178, 0.495 ], "y_axis": [ 0.383, 0.436, -0.815 ], "z_axis": [ -0.361, 0.882, 0.302 ], "quaternion": [ 0.804, -0.527, -0.266, -0.064 ] } }, { "index": 645, "nt1": "///2/1559", "nt2": "///2/1577", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -140.443, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.371, "chi2": -154.739, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 73.294, "C1C1_dist": 8.755, "N1N9_dist": 7.666, "C6C8_dist": 9.083, "CNNC_torsion": -1.816, "hbonds_num": 1, "hbonds_desc": "N3-N1(imino)[3.03]", "interBase_angle": 17.366, "planarity": 0.675, "simple_Shear": -0.764, "simple_Stretch": -0.823, "simple_Buckle": 9.580, "simple_Propeller": 14.485, "bp_simpleParams": [ -0.764, -0.823, 1.991, 9.580, 14.485, 31.085 ], "bp_params": [ -0.694, -0.883, 1.991, 8.340, 15.232, 31.270 ], "frame": { "rmsd": null, "origin": [ 171.982, 224.612, 276.212 ], "x_axis": [ 0.681, 0.070, 0.729 ], "y_axis": [ 0.606, 0.505, -0.614 ], "z_axis": [ -0.412, 0.860, 0.301 ], "quaternion": [ 0.789, -0.467, -0.362, -0.170 ] } }, { "index": 646, "nt1": "///2/1560", "nt2": "///2/1575", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.164, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 82.254, "chi2": -164.837, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.170, "C1C1_dist": 10.054, "N1N9_dist": 8.879, "C6C8_dist": 10.028, "CNNC_torsion": 4.497, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.11],N3(imino)-O6(carbonyl)[3.80]", "interBase_angle": 37.368, "planarity": 0.395, "simple_Shear": 2.600, "simple_Stretch": 0.851, "simple_Buckle": 36.944, "simple_Propeller": 5.611, "bp_simpleParams": [ 2.600, 0.851, -1.784, 36.944, 5.611, 18.806 ], "bp_params": [ 2.732, 0.133, -1.784, 37.090, -4.553, 17.861 ], "frame": { "rmsd": null, "origin": [ 172.561, 228.899, 279.198 ], "x_axis": [ 0.939, 0.338, 0.057 ], "y_axis": [ -0.098, 0.423, -0.901 ], "z_axis": [ -0.329, 0.841, 0.430 ], "quaternion": [ 0.835, -0.521, -0.115, 0.131 ] } }, { "index": 647, "nt1": "///2/1560", "nt2": "///2/1576", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.164, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 100.680, "chi2": -161.023, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.973, "C1C1_dist": 9.114, "N1N9_dist": 8.375, "C6C8_dist": 9.686, "CNNC_torsion": -11.871, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.28]", "interBase_angle": 34.933, "planarity": 0.719, "simple_Shear": 4.129, "simple_Stretch": 1.368, "simple_Buckle": 29.384, "simple_Propeller": 18.891, "bp_simpleParams": [ 4.129, 1.368, 1.713, 29.384, 18.891, 35.772 ], "bp_params": [ 4.303, -0.633, 1.713, 34.761, 3.465, 34.252 ], "frame": { "rmsd": null, "origin": [ 172.429, 227.460, 277.748 ], "x_axis": [ 0.936, 0.292, 0.198 ], "y_axis": [ 0.033, 0.486, -0.873 ], "z_axis": [ -0.351, 0.823, 0.446 ], "quaternion": [ 0.847, -0.501, -0.162, 0.077 ] } }, { "index": 648, "nt1": "///2/1563", "nt2": "///2/1573", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "intra_chain": true, "chi1": -162.744, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 82.057, "chi2": -142.690, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.687, "C1C1_dist": 10.835, "N1N9_dist": 9.569, "C6C8_dist": 10.466, "CNNC_torsion": 24.966, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O6(carbonyl)[3.13],N2(amino)-O6(carbonyl)[2.39]", "interBase_angle": 52.908, "planarity": 0.765, "simple_Shear": 3.570, "simple_Stretch": 2.059, "simple_Buckle": -51.637, "simple_Propeller": 11.525, "bp_simpleParams": [ 3.570, 2.059, 0.689, -51.637, 11.525, 16.770 ], "bp_params": [ 4.060, 0.702, 0.689, -44.899, 27.988, 16.060 ], "frame": { "rmsd": null, "origin": [ 171.869, 239.494, 285.727 ], "x_axis": [ 0.069, 0.034, -0.997 ], "y_axis": [ -0.966, 0.252, -0.058 ], "z_axis": [ 0.250, 0.967, 0.050 ], "quaternion": [ 0.586, -0.438, 0.532, 0.427 ] } }, { "index": 649, "nt1": "///2/1564", "nt2": "///2/1571", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.118, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.381, "chi2": -178.384, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.827, "C1C1_dist": 10.876, "N1N9_dist": 8.947, "C6C8_dist": 9.751, "CNNC_torsion": 24.559, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.85],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 20.100, "planarity": 0.333, "simple_Shear": 0.108, "simple_Stretch": -0.305, "simple_Buckle": -4.623, "simple_Propeller": 19.561, "bp_simpleParams": [ 0.108, -0.305, -0.966, -4.623, 19.561, -6.669 ], "bp_params": [ 0.107, -0.305, -0.966, -4.520, 19.585, -6.762 ], "frame": { "rmsd": null, "origin": [ 174.228, 243.443, 282.545 ], "x_axis": [ -0.481, -0.030, -0.876 ], "y_axis": [ -0.870, 0.142, 0.472 ], "z_axis": [ 0.111, 0.989, -0.094 ], "quaternion": [ 0.377, -0.343, 0.655, 0.558 ] } }, { "index": 650, "nt1": "///2/1564", "nt2": "///2/1572", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.118, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.276, "chi2": -166.074, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 30.896, "C1C1_dist": 9.950, "N1N9_dist": 8.202, "C6C8_dist": 8.903, "CNNC_torsion": -5.594, "hbonds_num": 1, "hbonds_desc": "N3-N4(amino)[3.13]", "interBase_angle": 34.150, "planarity": 0.501, "simple_Shear": 4.017, "simple_Stretch": -0.587, "simple_Buckle": -24.502, "simple_Propeller": 23.787, "bp_simpleParams": [ 4.017, -0.587, 2.142, -24.502, 23.787, 0.838 ], "bp_params": [ 3.482, -2.088, 2.142, -13.476, 31.378, 0.865 ], "frame": { "rmsd": null, "origin": [ 173.822, 241.998, 284.513 ], "x_axis": [ -0.402, 0.065, -0.913 ], "y_axis": [ -0.890, 0.206, 0.406 ], "z_axis": [ 0.214, 0.976, -0.025 ], "quaternion": [ 0.441, -0.323, 0.639, 0.541 ] } }, { "index": 651, "nt1": "///2/1565", "nt2": "///2/1570", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.281, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.382, "chi2": -176.527, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.676, "C1C1_dist": 10.640, "N1N9_dist": 8.886, "C6C8_dist": 9.805, "CNNC_torsion": 10.929, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 4.081, "planarity": 0.234, "simple_Shear": 0.160, "simple_Stretch": -0.253, "simple_Buckle": -3.614, "simple_Propeller": 1.896, "bp_simpleParams": [ 0.160, -0.253, -0.900, -3.614, 1.896, -0.274 ], "bp_params": [ 0.157, -0.255, -0.900, -3.594, 1.934, -0.274 ], "frame": { "rmsd": null, "origin": [ 174.579, 246.003, 279.992 ], "x_axis": [ -0.906, -0.298, -0.300 ], "y_axis": [ -0.396, 0.350, 0.849 ], "z_axis": [ -0.148, 0.888, -0.435 ], "quaternion": [ 0.046, -0.211, 0.820, 0.530 ] } }, { "index": 652, "nt1": "///2/1566", "nt2": "///2/1568", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -170.997, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 89.059, "chi2": -147.442, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 33.223, "C1C1_dist": 8.136, "N1N9_dist": 7.235, "C6C8_dist": 7.199, "CNNC_torsion": -165.587, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N4(amino)[3.26]", "interBase_angle": 26.975, "planarity": 0.395, "simple_Shear": 8.458, "simple_Stretch": 5.679, "simple_Buckle": -4.220, "simple_Propeller": 26.643, "bp_simpleParams": [ 8.458, 5.679, -1.410, -4.220, 26.643, -58.951 ], "bp_params": [ 6.845, -7.546, -1.410, 25.772, 7.966, -57.827 ], "frame": { "rmsd": null, "origin": [ 176.055, 250.732, 276.930 ], "x_axis": [ -0.515, -0.141, 0.845 ], "y_axis": [ 0.662, 0.561, 0.497 ], "z_axis": [ -0.544, 0.816, -0.195 ], "quaternion": [ -0.461, 0.173, 0.754, 0.436 ] } }, { "index": 653, "nt1": "///2/1569", "nt2": "///2/1613", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -163.612, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.458, "chi2": -168.515, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 90.343, "C1C1_dist": 8.663, "N1N9_dist": 8.256, "C6C8_dist": 10.453, "CNNC_torsion": 168.986, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.90],N3-N2(amino)[3.14]", "interBase_angle": 21.024, "planarity": 0.314, "simple_Shear": 6.542, "simple_Stretch": 3.994, "simple_Buckle": -17.058, "simple_Propeller": -12.290, "bp_simpleParams": [ 6.542, 3.994, 0.323, -17.058, -12.290, 142.361 ], "bp_params": [ 1.849, 7.438, 0.323, -3.540, -20.724, 142.916 ], "frame": { "rmsd": null, "origin": [ 182.761, 249.861, 272.405 ], "x_axis": [ 0.623, 0.562, 0.544 ], "y_axis": [ -0.579, -0.136, 0.804 ], "z_axis": [ 0.526, -0.816, 0.241 ], "quaternion": [ 0.657, 0.616, -0.007, 0.434 ] } }, { "index": 654, "nt1": "///2/1576", "nt2": "///2/1582", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -161.023, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 106.193, "chi2": -141.349, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 123.490, "C1C1_dist": 4.924, "N1N9_dist": 6.431, "C6C8_dist": 8.851, "CNNC_torsion": 73.459, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O4'[3.33],N2(amino)-O2(carbonyl)[2.45]", "interBase_angle": 47.528, "planarity": 0.641, "simple_Shear": -0.311, "simple_Stretch": 7.684, "simple_Buckle": 33.449, "simple_Propeller": 33.765, "bp_simpleParams": [ -0.311, 7.684, -1.074, 33.449, 33.765, 169.035 ], "bp_params": [ -1.782, 7.481, -1.074, 26.324, 39.572, 169.366 ], "frame": { "rmsd": null, "origin": [ 168.753, 224.213, 274.037 ], "x_axis": [ 0.604, 0.004, -0.797 ], "y_axis": [ 0.721, 0.424, 0.549 ], "z_axis": [ 0.340, -0.906, 0.253 ], "quaternion": [ 0.755, 0.482, 0.376, -0.237 ] } }, { "index": 655, "nt1": "///2/1604", "nt2": "///2/1635", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.783, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.771, "chi2": -161.952, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.933, "C1C1_dist": 10.520, "N1N9_dist": 8.881, "C6C8_dist": 9.866, "CNNC_torsion": 1.674, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 10.022, "planarity": 0.177, "simple_Shear": -0.195, "simple_Stretch": -0.178, "simple_Buckle": -8.345, "simple_Propeller": -5.549, "bp_simpleParams": [ -0.195, -0.178, -0.893, -8.345, -5.549, 3.216 ], "bp_params": [ -0.193, -0.181, -0.893, -8.275, -5.654, 3.211 ], "frame": { "rmsd": null, "origin": [ 172.897, 262.344, 246.293 ], "x_axis": [ 0.247, 0.956, 0.159 ], "y_axis": [ -0.609, 0.025, 0.792 ], "z_axis": [ 0.753, -0.293, 0.589 ], "quaternion": [ 0.682, 0.398, 0.218, 0.574 ] } }, { "index": 656, "nt1": "///2/1605", "nt2": "///2/1634", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -159.338, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.046, "chi2": -169.511, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 14.297, "C1C1_dist": 10.054, "N1N9_dist": 8.807, "C6C8_dist": 9.315, "CNNC_torsion": 62.753, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.92],N3-N6(amino)[2.92]", "interBase_angle": 5.496, "planarity": 0.237, "simple_Shear": 6.992, "simple_Stretch": 2.316, "simple_Buckle": -4.778, "simple_Propeller": -2.716, "bp_simpleParams": [ 6.992, 2.316, -1.162, -4.778, -2.716, -2.581 ], "bp_params": [ 6.567, -3.336, -1.162, -5.292, 1.484, -2.578 ], "frame": { "rmsd": null, "origin": [ 176.129, 260.834, 247.426 ], "x_axis": [ -0.415, 0.505, 0.756 ], "y_axis": [ -0.521, -0.814, 0.258 ], "z_axis": [ 0.746, -0.287, 0.601 ], "quaternion": [ 0.305, 0.447, -0.008, 0.841 ] } }, { "index": 657, "nt1": "///2/1607", "nt2": "///2/1632", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 174.022, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 13.367, "chi2": -67.793, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 109.013, "C1C1_dist": 8.860, "N1N9_dist": 7.980, "C6C8_dist": 8.435, "CNNC_torsion": -69.973, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4'[2.82],N6(amino)-N3[2.82]", "interBase_angle": 59.324, "planarity": 0.804, "simple_Shear": -6.816, "simple_Stretch": 3.139, "simple_Buckle": -25.141, "simple_Propeller": 53.734, "bp_simpleParams": [ -6.816, 3.139, -0.574, -25.141, 53.734, 3.979 ], "bp_params": [ -6.546, -3.669, -0.574, -57.957, 12.662, 3.509 ], "frame": { "rmsd": null, "origin": [ 180.552, 261.750, 254.953 ], "x_axis": [ -0.684, 0.283, 0.672 ], "y_axis": [ -0.216, -0.959, 0.184 ], "z_axis": [ 0.697, -0.020, 0.717 ], "quaternion": [ 0.136, 0.373, 0.045, 0.916 ] } }, { "index": 658, "nt1": "///2/1608", "nt2": "///2/1631", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.178, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.050, "chi2": -156.332, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.704, "C1C1_dist": 8.954, "N1N9_dist": 7.236, "C6C8_dist": 8.157, "CNNC_torsion": 19.763, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O2(carbonyl)[3.47],O4(carbonyl)-N3(imino)[2.90]", "interBase_angle": 20.902, "planarity": 0.397, "simple_Shear": -1.839, "simple_Stretch": -1.784, "simple_Buckle": -20.181, "simple_Propeller": 5.442, "bp_simpleParams": [ -1.839, -1.784, -1.740, -20.181, 5.442, -5.685 ], "bp_params": [ -1.474, -2.095, -1.740, -20.845, 1.533, -5.592 ], "frame": { "rmsd": null, "origin": [ 183.549, 261.236, 256.714 ], "x_axis": [ -0.873, -0.446, 0.199 ], "y_axis": [ 0.327, -0.837, -0.439 ], "z_axis": [ 0.362, -0.318, 0.876 ], "quaternion": [ -0.204, 0.148, -0.200, 0.947 ] } }, { "index": 659, "nt1": "///2/1608", "nt2": "///2/1632", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -164.178, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 36.225, "chi2": -67.793, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 105.487, "C1C1_dist": 9.599, "N1N9_dist": 8.814, "C6C8_dist": 9.831, "CNNC_torsion": 13.078, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N2(amino)[2.40]", "interBase_angle": 61.069, "planarity": 0.769, "simple_Shear": -4.757, "simple_Stretch": 2.254, "simple_Buckle": -16.539, "simple_Propeller": 58.786, "bp_simpleParams": [ -4.757, 2.254, 2.637, -16.539, 58.786, 51.421 ], "bp_params": [ -5.100, -1.305, 2.637, -49.489, 35.779, 49.641 ], "frame": { "rmsd": null, "origin": [ 180.825, 261.815, 256.981 ], "x_axis": [ -0.722, -0.116, 0.682 ], "y_axis": [ 0.063, -0.993, -0.102 ], "z_axis": [ 0.689, -0.031, 0.725 ], "quaternion": [ -0.048, 0.369, -0.036, 0.927 ] } }, { "index": 660, "nt1": "///2/1609", "nt2": "///2/1630", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.216, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.075, "chi2": -149.805, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.708, "C1C1_dist": 9.965, "N1N9_dist": 8.523, "C6C8_dist": 9.697, "CNNC_torsion": 20.676, "hbonds_num": 2, "hbonds_desc": "N3*N1[3.01],N4(amino)-N1[3.38]", "unusual_base2base_hbonds": 1, "interBase_angle": 16.648, "planarity": 0.448, "simple_Shear": -0.797, "simple_Stretch": -0.271, "simple_Buckle": -10.305, "simple_Propeller": 13.075, "bp_simpleParams": [ -0.797, -0.271, -1.624, -10.305, 13.075, 10.027 ], "bp_params": [ -0.769, -0.343, -1.624, -11.453, 12.082, 10.034 ], "frame": { "rmsd": null, "origin": [ 183.593, 260.292, 260.350 ], "x_axis": [ -0.583, -0.807, -0.088 ], "y_axis": [ 0.733, -0.477, -0.484 ], "z_axis": [ 0.349, -0.347, 0.871 ], "quaternion": [ -0.450, 0.076, -0.243, 0.856 ] } }, { "index": 661, "nt1": "///2/1609", "nt2": "///2/1631", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.216, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 64.893, "chi2": -156.332, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 76.775, "C1C1_dist": 7.207, "N1N9_dist": 6.242, "C6C8_dist": 7.812, "CNNC_torsion": -5.713, "hbonds_num": 2, "hbonds_desc": "N3-N3(imino)[3.12],N4(amino)-O4(carbonyl)[3.42]", "interBase_angle": 20.200, "planarity": 0.466, "simple_Shear": -0.875, "simple_Stretch": -2.005, "simple_Buckle": -16.008, "simple_Propeller": 12.320, "bp_simpleParams": [ -0.875, -2.005, 1.857, -16.008, 12.320, 33.820 ], "bp_params": [ -0.673, -2.082, 1.857, -17.161, 10.656, 33.602 ], "frame": { "rmsd": null, "origin": [ 183.486, 260.360, 258.462 ], "x_axis": [ -0.718, -0.696, 0.022 ], "y_axis": [ 0.609, -0.643, -0.465 ], "z_axis": [ 0.338, -0.320, 0.885 ], "quaternion": [ -0.362, 0.100, -0.218, 0.901 ] } }, { "index": 662, "nt1": "///2/1610", "nt2": "///2/1629", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.005, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.241, "chi2": -154.618, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.043, "C1C1_dist": 10.637, "N1N9_dist": 8.888, "C6C8_dist": 9.778, "CNNC_torsion": 12.063, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 14.045, "planarity": 0.201, "simple_Shear": -0.117, "simple_Stretch": -0.221, "simple_Buckle": -13.155, "simple_Propeller": 4.920, "bp_simpleParams": [ -0.117, -0.221, -0.925, -13.155, 4.920, -1.689 ], "bp_params": [ -0.115, -0.222, -0.925, -13.208, 4.778, -1.680 ], "frame": { "rmsd": null, "origin": [ 184.402, 259.336, 264.697 ], "x_axis": [ -0.244, -0.776, -0.581 ], "y_axis": [ 0.935, -0.030, -0.352 ], "z_axis": [ 0.256, -0.630, 0.734 ], "quaternion": [ 0.604, 0.115, 0.346, -0.708 ] } }, { "index": 663, "nt1": "///2/1611", "nt2": "///2/1628", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.367, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.381, "chi2": -150.321, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.854, "C1C1_dist": 10.630, "N1N9_dist": 8.924, "C6C8_dist": 9.855, "CNNC_torsion": 16.879, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 14.616, "planarity": 0.215, "simple_Shear": -0.117, "simple_Stretch": -0.186, "simple_Buckle": -6.131, "simple_Propeller": 13.268, "bp_simpleParams": [ -0.117, -0.186, -0.702, -6.131, 13.268, -1.150 ], "bp_params": [ -0.115, -0.187, -0.702, -6.256, 13.209, -1.156 ], "frame": { "rmsd": null, "origin": [ 184.211, 256.781, 267.351 ], "x_axis": [ 0.144, -0.647, -0.749 ], "y_axis": [ 0.939, 0.328, -0.103 ], "z_axis": [ 0.312, -0.688, 0.655 ], "quaternion": [ 0.729, 0.201, 0.364, -0.544 ] } }, { "index": 664, "nt1": "///2/1612", "nt2": "///2/1627", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.521, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.498, "chi2": -162.449, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.031, "C1C1_dist": 10.574, "N1N9_dist": 8.889, "C6C8_dist": 9.861, "CNNC_torsion": 2.421, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 5.423, "planarity": 0.158, "simple_Shear": -0.203, "simple_Stretch": -0.189, "simple_Buckle": -3.177, "simple_Propeller": -4.395, "bp_simpleParams": [ -0.203, -0.189, -0.732, -3.177, -4.395, 2.198 ], "bp_params": [ -0.200, -0.192, -0.732, -3.111, -4.442, 2.199 ], "frame": { "rmsd": null, "origin": [ 184.064, 253.389, 268.521 ], "x_axis": [ 0.491, -0.142, -0.859 ], "y_axis": [ 0.745, 0.579, 0.330 ], "z_axis": [ 0.451, -0.802, 0.391 ], "quaternion": [ 0.784, 0.361, 0.418, -0.283 ] } }, { "index": 665, "nt1": "///2/1613", "nt2": "///2/1626", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.515, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.510, "chi2": -163.085, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.874, "C1C1_dist": 10.699, "N1N9_dist": 8.949, "C6C8_dist": 9.873, "CNNC_torsion": 6.329, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 7.826, "planarity": 0.121, "simple_Shear": -0.167, "simple_Stretch": -0.150, "simple_Buckle": -7.438, "simple_Propeller": 2.432, "bp_simpleParams": [ -0.167, -0.150, -0.606, -7.438, 2.432, -0.124 ], "bp_params": [ -0.165, -0.152, -0.606, -7.469, 2.335, -0.124 ], "frame": { "rmsd": null, "origin": [ 184.524, 249.827, 268.964 ], "x_axis": [ 0.709, 0.360, -0.606 ], "y_axis": [ 0.352, 0.565, 0.746 ], "z_axis": [ 0.611, -0.743, 0.274 ], "quaternion": [ 0.798, 0.466, 0.381, 0.002 ] } }, { "index": 666, "nt1": "///2/1614", "nt2": "///2/1625", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.909, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.796, "chi2": -162.811, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.989, "C1C1_dist": 10.729, "N1N9_dist": 8.909, "C6C8_dist": 9.755, "CNNC_torsion": 19.381, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.87]", "interBase_angle": 13.338, "planarity": 0.268, "simple_Shear": 0.214, "simple_Stretch": -0.237, "simple_Buckle": -5.294, "simple_Propeller": 12.242, "bp_simpleParams": [ 0.214, -0.237, -1.070, -5.294, 12.242, -5.169 ], "bp_params": [ 0.209, -0.242, -1.070, -4.989, 12.370, -5.194 ], "frame": { "rmsd": null, "origin": [ 185.955, 246.106, 268.508 ], "x_axis": [ 0.762, 0.628, -0.160 ], "y_axis": [ -0.057, 0.311, 0.949 ], "z_axis": [ 0.645, -0.713, 0.273 ], "quaternion": [ 0.766, 0.543, 0.263, 0.224 ] } }, { "index": 667, "nt1": "///2/1615", "nt2": "///2/1624", "bp": "U+U", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -169.078, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 37.173, "chi2": -2.186, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 20.161, "C1C1_dist": 12.106, "N1N9_dist": 9.542, "C6C8_dist": 9.057, "CNNC_torsion": 36.330, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O4(carbonyl)[3.52],O4(carbonyl)*O4(carbonyl)[3.15]", "unusual_base2base_hbonds": 1, "interBase_angle": 26.393, "planarity": 0.367, "simple_Shear": -4.026, "simple_Stretch": 0.886, "simple_Buckle": 1.731, "simple_Propeller": 26.336, "bp_simpleParams": [ -4.026, 0.886, -1.781, 1.731, 26.336, -129.877 ], "bp_params": [ -1.053, 3.986, -1.781, 24.201, 10.532, -129.065 ], "frame": { "rmsd": null, "origin": [ 188.346, 242.582, 267.817 ], "x_axis": [ 0.082, 0.463, 0.883 ], "y_axis": [ -0.693, -0.610, 0.384 ], "z_axis": [ 0.717, -0.643, 0.271 ], "quaternion": [ 0.431, 0.596, -0.096, 0.671 ] } }, { "index": 668, "nt1": "///2/1616", "nt2": "///2/1620", "bp": "U+A", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -156.424, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 39.601, "chi2": 96.510, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 35.000, "C1C1_dist": 10.697, "N1N9_dist": 8.536, "C6C8_dist": 9.587, "CNNC_torsion": -166.456, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N1[2.95]", "interBase_angle": 13.416, "planarity": 0.352, "simple_Shear": 1.952, "simple_Stretch": -0.277, "simple_Buckle": 11.752, "simple_Propeller": 6.471, "bp_simpleParams": [ 1.952, -0.277, -1.878, 11.752, 6.471, 176.121 ], "bp_params": [ 0.664, 1.857, -1.878, -3.963, 12.817, 176.143 ], "frame": { "rmsd": null, "origin": [ 190.224, 240.347, 267.698 ], "x_axis": [ 0.508, 0.489, -0.709 ], "y_axis": [ 0.190, 0.740, 0.646 ], "z_axis": [ 0.840, -0.463, 0.283 ], "quaternion": [ 0.795, 0.348, 0.487, 0.094 ] } }, { "index": 669, "nt1": "///2/1616", "nt2": "///2/1624", "bp": "U+U", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -156.424, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.815, "chi2": -2.186, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 36.739, "C1C1_dist": 9.198, "N1N9_dist": 7.375, "C6C8_dist": 7.480, "CNNC_torsion": -25.174, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O4(carbonyl)[2.52]", "interBase_angle": 31.735, "planarity": 0.582, "simple_Shear": -1.811, "simple_Stretch": 0.246, "simple_Buckle": 9.051, "simple_Propeller": 30.417, "bp_simpleParams": [ -1.811, 0.246, 0.663, 9.051, 30.417, -89.855 ], "bp_params": [ -0.241, 1.812, 0.663, 31.731, -0.504, -87.631 ], "frame": { "rmsd": null, "origin": [ 190.094, 242.550, 267.777 ], "x_axis": [ -0.159, 0.206, 0.966 ], "y_axis": [ -0.642, -0.765, 0.058 ], "z_axis": [ 0.750, -0.611, 0.253 ], "quaternion": [ 0.287, 0.582, -0.187, 0.738 ] } }, { "index": 670, "nt1": "///2/1616", "nt2": "///2/1661", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -156.424, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 151.484, "chi2": 169.135, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 97.233, "C1C1_dist": 5.766, "N1N9_dist": 7.300, "C6C8_dist": 9.727, "CNNC_torsion": -13.265, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.99],O2'(hydroxyl)-N3[2.46]", "interBase_angle": 34.124, "planarity": 0.387, "simple_Shear": 0.865, "simple_Stretch": 7.063, "simple_Buckle": 30.826, "simple_Propeller": 14.637, "bp_simpleParams": [ 0.865, 7.063, -1.225, 30.826, 14.637, 147.516 ], "bp_params": [ 2.689, 6.588, -1.225, 33.631, 5.783, 146.184 ], "frame": { "rmsd": null, "origin": [ 190.344, 238.315, 266.485 ], "x_axis": [ 0.482, 0.697, -0.530 ], "y_axis": [ -0.210, 0.680, 0.703 ], "z_axis": [ 0.850, -0.227, 0.474 ], "quaternion": [ 0.812, 0.286, 0.425, 0.279 ] } }, { "index": 671, "nt1": "///2/1620", "nt2": "///2/1661", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..-W", "intra_chain": true, "chi1": 96.510, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 17.570, "chi2": 169.135, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 52.776, "C1C1_dist": 13.981, "N1N9_dist": 11.722, "C6C8_dist": 11.709, "CNNC_torsion": 63.728, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.53]", "interBase_angle": 34.679, "planarity": 0.380, "simple_Shear": -3.601, "simple_Stretch": 3.078, "simple_Buckle": 20.551, "simple_Propeller": 27.934, "bp_simpleParams": [ -3.601, 3.078, -0.159, 20.551, 27.934, -32.737 ], "bp_params": [ -4.495, 1.496, -0.159, 8.375, 33.653, -34.039 ], "frame": { "rmsd": null, "origin": [ 190.788, 237.031, 266.387 ], "x_axis": [ 0.218, -0.669, -0.711 ], "y_axis": [ 0.579, 0.675, -0.457 ], "z_axis": [ 0.786, -0.312, 0.535 ], "quaternion": [ 0.779, -0.047, 0.480, -0.400 ] } }, { "index": 672, "nt1": "///2/1648", "nt2": "///2/1649", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -101.230, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 143.348, "chi2": -174.946, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.541, "C1C1_dist": 6.632, "N1N9_dist": 6.848, "C6C8_dist": 6.841, "CNNC_torsion": 2.433, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-OP2[2.47],N2(amino)-O4(carbonyl)[2.62]", "interBase_angle": 3.326, "planarity": 0.129, "simple_Shear": 0.030, "simple_Stretch": 7.516, "simple_Buckle": 3.326, "simple_Propeller": 0.058, "bp_simpleParams": [ 0.030, 7.516, 0.653, 3.326, 0.058, 8.632 ], "bp_params": [ 7.428, 1.144, 0.653, 0.576, -3.276, 8.636 ], "frame": { "rmsd": null, "origin": [ 150.892, 237.302, 240.942 ], "x_axis": [ -0.747, -0.190, 0.637 ], "y_axis": [ 0.377, -0.910, 0.171 ], "z_axis": [ 0.548, 0.369, 0.751 ], "quaternion": [ -0.154, 0.321, 0.146, 0.923 ] } }, { "index": 673, "nt1": "///2/1648", "nt2": "///2/1675", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -101.230, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 80.202, "chi2": -135.709, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 30.120, "C1C1_dist": 10.645, "N1N9_dist": 9.348, "C6C8_dist": 9.140, "CNNC_torsion": 143.880, "hbonds_num": 3, "hbonds_desc": "N1(imino)-OP2[2.82],N2(amino)-OP2[2.45],N2(amino)-N7[3.38]", "interBase_angle": 42.219, "planarity": 0.584, "simple_Shear": 7.389, "simple_Stretch": 6.128, "simple_Buckle": -0.149, "simple_Propeller": -42.219, "bp_simpleParams": [ 7.389, 6.128, 0.176, -0.149, -42.219, -63.624 ], "bp_params": [ 8.318, -4.793, 0.176, -39.627, -14.566, -60.964 ], "frame": { "rmsd": null, "origin": [ 152.384, 237.973, 241.437 ], "x_axis": [ -0.435, -0.721, 0.540 ], "y_axis": [ 0.870, -0.492, 0.043 ], "z_axis": [ 0.235, 0.488, 0.841 ], "quaternion": [ -0.478, 0.233, 0.160, 0.832 ] } }, { "index": 674, "nt1": "///2/1649", "nt2": "///2/1675", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -174.946, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.742, "chi2": -135.709, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.916, "C1C1_dist": 9.670, "N1N9_dist": 7.071, "C6C8_dist": 6.389, "CNNC_torsion": 65.247, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N7[3.03],O4(carbonyl)*N7[2.33]", "unusual_base2base_hbonds": 1, "interBase_angle": 39.923, "planarity": 0.741, "simple_Shear": 2.466, "simple_Stretch": -1.063, "simple_Buckle": -29.779, "simple_Propeller": -26.592, "bp_simpleParams": [ 2.466, -1.063, -2.116, -29.779, -26.592, -72.968 ], "bp_params": [ 1.943, -1.854, -2.116, -37.200, -14.493, -70.501 ], "frame": { "rmsd": null, "origin": [ 154.762, 239.078, 238.727 ], "x_axis": [ -0.508, -0.694, 0.510 ], "y_axis": [ 0.835, -0.543, 0.094 ], "z_axis": [ 0.212, 0.474, 0.855 ], "quaternion": [ -0.448, 0.212, 0.166, 0.852 ] } }, { "index": 675, "nt1": "///2/1650", "nt2": "///2/1674", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -166.605, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.110, "chi2": -166.748, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.205, "C1C1_dist": 10.542, "N1N9_dist": 9.046, "C6C8_dist": 9.334, "CNNC_torsion": -101.602, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.79],N6(amino)-N3[3.24]", "interBase_angle": 7.440, "planarity": 0.252, "simple_Shear": -7.061, "simple_Stretch": 2.558, "simple_Buckle": -4.406, "simple_Propeller": 5.995, "bp_simpleParams": [ -7.061, 2.558, 1.181, -4.406, 5.995, -15.015 ], "bp_params": [ -6.711, -3.371, 1.181, -7.383, 0.920, -14.984 ], "frame": { "rmsd": null, "origin": [ 156.686, 237.978, 242.178 ], "x_axis": [ -0.430, -0.518, 0.740 ], "y_axis": [ 0.585, -0.784, -0.209 ], "z_axis": [ 0.688, 0.343, 0.639 ], "quaternion": [ -0.326, 0.423, 0.040, 0.845 ] } }, { "index": 676, "nt1": "///2/1651", "nt2": "///2/1673", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.298, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.630, "chi2": -158.096, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.012, "C1C1_dist": 10.676, "N1N9_dist": 8.910, "C6C8_dist": 9.816, "CNNC_torsion": -6.647, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.87]", "interBase_angle": 5.580, "planarity": 0.129, "simple_Shear": 0.102, "simple_Stretch": -0.140, "simple_Buckle": 5.379, "simple_Propeller": 1.482, "bp_simpleParams": [ 0.102, -0.140, 0.694, 5.379, 1.482, -1.034 ], "bp_params": [ 0.100, -0.142, 0.694, 5.402, 1.396, -1.033 ], "frame": { "rmsd": null, "origin": [ 158.040, 238.368, 244.914 ], "x_axis": [ 0.229, -0.960, 0.160 ], "y_axis": [ 0.686, 0.042, -0.727 ], "z_axis": [ 0.691, 0.276, 0.668 ], "quaternion": [ 0.696, -0.360, 0.190, -0.591 ] } }, { "index": 677, "nt1": "///2/1652", "nt2": "///2/1672", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.398, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.263, "chi2": -169.278, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.010, "C1C1_dist": 10.590, "N1N9_dist": 8.867, "C6C8_dist": 9.749, "CNNC_torsion": 3.009, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.92],N1(imino)-O2(carbonyl)[2.91],N2(amino)-O2(carbonyl)[3.37]", "interBase_angle": 11.953, "planarity": 0.136, "simple_Shear": -1.912, "simple_Stretch": -0.063, "simple_Buckle": 9.255, "simple_Propeller": 7.564, "bp_simpleParams": [ -1.912, -0.063, 0.420, 9.255, 7.564, -1.478 ], "bp_params": [ -1.867, -0.415, 0.420, 7.705, 9.138, -1.480 ], "frame": { "rmsd": null, "origin": [ 159.177, 238.274, 248.123 ], "x_axis": [ 0.356, -0.860, -0.367 ], "y_axis": [ 0.487, 0.505, -0.713 ], "z_axis": [ 0.798, 0.075, 0.598 ], "quaternion": [ 0.784, -0.251, 0.371, -0.429 ] } }, { "index": 678, "nt1": "///2/1653", "nt2": "///2/1671", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.729, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.111, "chi2": 156.886, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.325, "C1C1_dist": 10.625, "N1N9_dist": 8.836, "C6C8_dist": 9.662, "CNNC_torsion": 4.423, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.92],O2(carbonyl)-N2(amino)[3.26],N3(imino)-O6(carbonyl)[2.92]", "interBase_angle": 15.388, "planarity": 0.181, "simple_Shear": 1.703, "simple_Stretch": -0.123, "simple_Buckle": 15.017, "simple_Propeller": 3.362, "bp_simpleParams": [ 1.703, -0.123, -0.608, 15.017, 3.362, -3.458 ], "bp_params": [ 1.658, -0.405, -0.608, 15.368, 0.790, -3.427 ], "frame": { "rmsd": null, "origin": [ 161.449, 236.477, 250.115 ], "x_axis": [ 0.580, -0.192, -0.792 ], "y_axis": [ 0.159, 0.980, -0.121 ], "z_axis": [ 0.799, -0.056, 0.599 ], "quaternion": [ 0.889, -0.018, 0.447, -0.099 ] } }, { "index": 679, "nt1": "///2/1654", "nt2": "///2/1670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.466, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.971, "chi2": -160.097, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.067, "C1C1_dist": 10.548, "N1N9_dist": 8.895, "C6C8_dist": 9.882, "CNNC_torsion": -4.039, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 11.486, "planarity": 0.167, "simple_Shear": -0.239, "simple_Stretch": -0.148, "simple_Buckle": -5.532, "simple_Propeller": -10.066, "bp_simpleParams": [ -0.239, -0.148, -0.589, -5.532, -10.066, 3.534 ], "bp_params": [ -0.237, -0.152, -0.589, -5.353, -10.162, 3.544 ], "frame": { "rmsd": null, "origin": [ 164.647, 234.405, 251.726 ], "x_axis": [ 0.269, 0.155, -0.951 ], "y_axis": [ 0.117, 0.974, 0.192 ], "z_axis": [ 0.956, -0.162, 0.244 ], "quaternion": [ 0.788, 0.112, 0.605, 0.012 ] } }, { "index": 680, "nt1": "///2/1655", "nt2": "///2/1669", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.929, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.564, "chi2": -171.240, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.583, "C1C1_dist": 10.737, "N1N9_dist": 8.940, "C6C8_dist": 9.859, "CNNC_torsion": -0.015, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 5.365, "planarity": 0.158, "simple_Shear": 0.173, "simple_Stretch": -0.171, "simple_Buckle": -2.997, "simple_Propeller": -4.450, "bp_simpleParams": [ 0.173, -0.171, -0.489, -2.997, -4.450, 0.223 ], "bp_params": [ 0.171, -0.173, -0.489, -3.054, -4.411, 0.223 ], "frame": { "rmsd": null, "origin": [ 167.460, 231.955, 252.795 ], "x_axis": [ 0.310, 0.692, -0.652 ], "y_axis": [ -0.159, 0.713, 0.682 ], "z_axis": [ 0.937, -0.108, 0.331 ], "quaternion": [ 0.767, 0.257, 0.518, 0.277 ] } }, { "index": 681, "nt1": "///2/1656", "nt2": "///2/1668", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.408, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.699, "chi2": -154.527, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.372, "C1C1_dist": 10.658, "N1N9_dist": 8.670, "C6C8_dist": 9.356, "CNNC_torsion": 0.605, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.81],O6(carbonyl)*O4(carbonyl)[2.45],N2(amino)-O2(carbonyl)[2.94]", "unusual_base2base_hbonds": 1, "interBase_angle": 7.186, "planarity": 0.084, "simple_Shear": -0.783, "simple_Stretch": -0.558, "simple_Buckle": -7.166, "simple_Propeller": 0.538, "bp_simpleParams": [ -0.783, -0.558, -0.313, -7.166, 0.538, -10.708 ], "bp_params": [ -0.740, -0.614, -0.313, -7.186, 0.004, -10.687 ], "frame": { "rmsd": null, "origin": [ 171.139, 229.858, 252.969 ], "x_axis": [ 0.109, 0.934, -0.341 ], "y_axis": [ -0.354, 0.357, 0.864 ], "z_axis": [ 0.929, 0.027, 0.370 ], "quaternion": [ 0.677, 0.309, 0.469, 0.476 ] } }, { "index": 682, "nt1": "///2/1657", "nt2": "///2/1667", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.747, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.709, "chi2": -163.381, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.449, "C1C1_dist": 10.753, "N1N9_dist": 8.831, "C6C8_dist": 9.560, "CNNC_torsion": 0.383, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.84],N1(imino)-O2(carbonyl)[3.05],N2(amino)-O2(carbonyl)[3.22]", "interBase_angle": 6.979, "planarity": 0.097, "simple_Shear": -1.219, "simple_Stretch": -0.329, "simple_Buckle": -5.273, "simple_Propeller": 4.571, "bp_simpleParams": [ -1.219, -0.329, -0.059, -5.273, 4.571, -9.149 ], "bp_params": [ -1.172, -0.471, -0.059, -5.780, 3.910, -9.143 ], "frame": { "rmsd": null, "origin": [ 174.603, 229.746, 252.853 ], "x_axis": [ -0.233, 0.953, 0.194 ], "y_axis": [ -0.397, -0.276, 0.875 ], "z_axis": [ 0.888, 0.127, 0.443 ], "quaternion": [ 0.483, 0.387, 0.359, 0.698 ] } }, { "index": 683, "nt1": "///2/1658", "nt2": "///2/1666", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.884, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.231, "chi2": -169.507, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.691, "C1C1_dist": 10.832, "N1N9_dist": 8.990, "C6C8_dist": 9.889, "CNNC_torsion": 5.388, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 8.903, "planarity": 0.112, "simple_Shear": -0.172, "simple_Stretch": -0.133, "simple_Buckle": 0.162, "simple_Propeller": 8.901, "bp_simpleParams": [ -0.172, -0.133, 0.018, 0.162, 8.901, -0.758 ], "bp_params": [ -0.170, -0.135, 0.018, 0.053, 8.903, -0.759 ], "frame": { "rmsd": null, "origin": [ 177.636, 231.193, 253.181 ], "x_axis": [ -0.530, 0.548, 0.647 ], "y_axis": [ -0.156, -0.813, 0.561 ], "z_axis": [ 0.834, 0.196, 0.516 ], "quaternion": [ 0.208, 0.438, 0.224, 0.845 ] } }, { "index": 684, "nt1": "///2/1659", "nt2": "///2/1664", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -155.882, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.611, "chi2": -109.764, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 15.820, "C1C1_dist": 9.620, "N1N9_dist": 7.254, "C6C8_dist": 6.549, "CNNC_torsion": -170.695, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.79],N3(imino)-N7[3.12],O4(carbonyl)*OP2[2.88]", "interBase_angle": 2.713, "planarity": 0.098, "simple_Shear": 5.251, "simple_Stretch": 1.359, "simple_Buckle": 2.222, "simple_Propeller": 1.557, "bp_simpleParams": [ 5.251, 1.359, 0.445, 2.222, 1.557, -84.521 ], "bp_params": [ 4.625, -2.833, 0.445, 2.664, -0.517, -84.506 ], "frame": { "rmsd": null, "origin": [ 180.916, 234.157, 253.867 ], "x_axis": [ -0.294, -0.675, 0.676 ], "y_axis": [ 0.618, -0.674, -0.404 ], "z_axis": [ 0.729, 0.299, 0.616 ], "quaternion": [ -0.402, 0.437, -0.033, 0.804 ] } }, { "index": 685, "nt1": "///2/1674", "nt2": "///2/1675", "bp": "G+A", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -166.748, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 126.368, "chi2": -135.709, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.694, "C1C1_dist": 6.549, "N1N9_dist": 6.391, "C6C8_dist": 6.524, "CNNC_torsion": -43.458, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[2.92]", "interBase_angle": 48.163, "planarity": 0.885, "simple_Shear": -0.140, "simple_Stretch": 6.809, "simple_Buckle": -4.088, "simple_Propeller": -47.989, "bp_simpleParams": [ -0.140, 6.809, -1.141, -4.088, -47.989, 32.876 ], "bp_params": [ 6.790, -0.532, -1.141, -47.396, 8.560, 30.330 ], "frame": { "rmsd": null, "origin": [ 156.039, 237.234, 241.576 ], "x_axis": [ -0.185, -0.802, 0.568 ], "y_axis": [ -0.940, 0.313, 0.136 ], "z_axis": [ -0.287, -0.509, -0.812 ], "quaternion": [ -0.281, -0.573, 0.760, -0.123 ] } }, { "index": 686, "nt1": "///2/1681", "nt2": "///2/1683", "bp": "U+C", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -159.324, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 116.689, "chi2": -166.255, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.174, "C1C1_dist": 8.972, "N1N9_dist": 8.360, "C6C8_dist": 8.686, "CNNC_torsion": -22.470, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[2.89]", "interBase_angle": 44.456, "planarity": 0.518, "simple_Shear": 0.037, "simple_Stretch": 5.906, "simple_Buckle": 2.654, "simple_Propeller": -44.377, "bp_simpleParams": [ 0.037, 5.906, 1.344, 2.654, -44.377, -30.193 ], "bp_params": [ 5.905, -0.112, 1.344, -44.413, -1.956, -28.050 ], "frame": { "rmsd": null, "origin": [ 163.322, 232.445, 217.699 ], "x_axis": [ -0.484, -0.771, 0.415 ], "y_axis": [ -0.542, -0.109, -0.834 ], "z_axis": [ 0.687, -0.628, -0.365 ], "quaternion": [ 0.103, -0.497, 0.660, -0.554 ] } }, { "index": 687, "nt1": "///2/1682", "nt2": "///2/1684", "bp": "C+C", "name": "--", "Saenger": "--", "LW": "c.H", "DSSR": "c.+M", "intra_chain": true, "chi1": -123.576, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 107.047, "chi2": -163.355, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.007, "C1C1_dist": 9.081, "N1N9_dist": 8.268, "C6C8_dist": 8.495, "CNNC_torsion": 2.935, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.06]", "interBase_angle": 31.952, "planarity": 0.327, "simple_Shear": -0.344, "simple_Stretch": 4.774, "simple_Buckle": -23.653, "simple_Propeller": -21.482, "bp_simpleParams": [ -0.344, 4.774, 2.135, -23.653, -21.482, -44.129 ], "bp_params": [ 4.733, 0.714, 2.135, -23.228, 21.941, -44.061 ], "frame": { "rmsd": null, "origin": [ 166.084, 230.571, 217.889 ], "x_axis": [ -0.715, -0.696, 0.055 ], "y_axis": [ -0.183, 0.111, -0.977 ], "z_axis": [ 0.674, -0.709, -0.207 ], "quaternion": [ 0.217, -0.308, 0.713, -0.591 ] } }, { "index": 688, "nt1": "///2/1693", "nt2": "///2/1834", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm+m", "intra_chain": true, "chi1": -154.871, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 91.745, "chi2": 129.949, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 146.080, "C1C1_dist": 5.760, "N1N9_dist": 7.098, "C6C8_dist": 8.270, "CNNC_torsion": 29.741, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-OP1[3.09],N2(amino)-O4'[3.03]", "interBase_angle": 30.515, "planarity": 0.391, "simple_Shear": 4.809, "simple_Stretch": 9.147, "simple_Buckle": -12.849, "simple_Propeller": 27.678, "bp_simpleParams": [ 4.809, 9.147, 0.955, -12.849, 27.678, 60.109 ], "bp_params": [ 6.602, 7.950, 0.955, -6.651, 29.782, 61.738 ], "frame": { "rmsd": null, "origin": [ 183.606, 220.077, 201.091 ], "x_axis": [ -0.294, -0.597, 0.746 ], "y_axis": [ -0.683, -0.415, -0.601 ], "z_axis": [ 0.668, -0.687, -0.286 ], "quaternion": [ 0.036, 0.593, -0.540, 0.596 ] } }, { "index": 689, "nt1": "///2/1700", "nt2": "///2/1836", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 28.353, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 54.591, "chi2": -98.276, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 52.147, "C1C1_dist": 10.726, "N1N9_dist": 8.976, "C6C8_dist": 8.129, "CNNC_torsion": -11.625, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 2.180, "planarity": 0.291, "simple_Shear": -4.345, "simple_Stretch": 3.332, "simple_Buckle": -2.090, "simple_Propeller": 0.619, "bp_simpleParams": [ -4.345, 3.332, -1.313, -2.090, 0.619, 78.905 ], "bp_params": [ 0.435, -5.458, -1.313, 0.940, -1.966, 78.911 ], "frame": { "rmsd": null, "origin": [ 188.830, 218.379, 201.235 ], "x_axis": [ -0.414, -0.463, -0.784 ], "y_axis": [ -0.081, 0.876, -0.475 ], "z_axis": [ 0.907, -0.133, -0.400 ], "quaternion": [ 0.515, -0.166, 0.820, -0.186 ] } }, { "index": 690, "nt1": "///2/1702", "nt2": "///2/1833", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.646, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.945, "chi2": -158.680, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.305, "C1C1_dist": 10.617, "N1N9_dist": 8.885, "C6C8_dist": 9.825, "CNNC_torsion": 7.148, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 4.231, "planarity": 0.219, "simple_Shear": -0.187, "simple_Stretch": -0.231, "simple_Buckle": 4.153, "simple_Propeller": 0.810, "bp_simpleParams": [ -0.187, -0.231, -0.811, 4.153, 0.810, 0.545 ], "bp_params": [ -0.184, -0.234, -0.811, 4.142, 0.866, 0.544 ], "frame": { "rmsd": null, "origin": [ 191.976, 220.340, 199.709 ], "x_axis": [ 0.187, 0.981, 0.047 ], "y_axis": [ 0.360, -0.113, 0.926 ], "z_axis": [ 0.914, -0.156, -0.374 ], "quaternion": [ 0.418, 0.647, 0.518, 0.371 ] } }, { "index": 691, "nt1": "///2/1702", "nt2": "///2/1836", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -167.646, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 25.229, "chi2": -98.276, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 39.843, "C1C1_dist": 12.753, "N1N9_dist": 10.411, "C6C8_dist": 10.898, "CNNC_torsion": 169.531, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N1(imino)[3.17],O6(carbonyl)-N2(amino)[2.80]", "interBase_angle": 0.838, "planarity": 0.497, "simple_Shear": 0.054, "simple_Stretch": 0.861, "simple_Buckle": -0.727, "simple_Propeller": -0.417, "bp_simpleParams": [ 0.054, 0.861, 2.131, -0.727, -0.417, 164.393 ], "bp_params": [ -0.861, 0.063, 2.131, 0.409, -0.731, 164.393 ], "frame": { "rmsd": null, "origin": [ 190.421, 220.555, 199.797 ], "x_axis": [ -0.369, 0.256, -0.893 ], "y_axis": [ 0.230, 0.957, 0.179 ], "z_axis": [ 0.900, -0.139, -0.412 ], "quaternion": [ 0.542, 0.147, 0.827, 0.012 ] } }, { "index": 692, "nt1": "///2/1703", "nt2": "///2/1832", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.210, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 81.775, "chi2": -168.252, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.415, "C1C1_dist": 10.181, "N1N9_dist": 9.074, "C6C8_dist": 10.460, "CNNC_torsion": -2.735, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*N1[2.99],N3-N6(amino)[3.98]", "unusual_base2base_hbonds": 1, "interBase_angle": 13.362, "planarity": 0.178, "simple_Shear": 2.474, "simple_Stretch": 1.096, "simple_Buckle": 12.708, "simple_Propeller": -4.130, "bp_simpleParams": [ 2.474, 1.096, -0.825, 12.708, -4.130, 26.934 ], "bp_params": [ 2.667, 0.456, -0.825, 11.317, -7.105, 26.858 ], "frame": { "rmsd": null, "origin": [ 195.195, 221.980, 198.031 ], "x_axis": [ 0.354, 0.693, 0.628 ], "y_axis": [ 0.204, -0.713, 0.671 ], "z_axis": [ 0.913, -0.109, -0.393 ], "quaternion": [ 0.249, 0.784, 0.286, 0.491 ] } }, { "index": 693, "nt1": "///2/1704", "nt2": "///2/1831", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -161.369, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 110.806, "chi2": 174.759, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 31.514, "C1C1_dist": 9.852, "N1N9_dist": 9.143, "C6C8_dist": 10.353, "CNNC_torsion": -14.106, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.36],O2(carbonyl)-N6(amino)[2.62]", "interBase_angle": 11.714, "planarity": 0.154, "simple_Shear": 5.785, "simple_Stretch": 2.864, "simple_Buckle": 7.231, "simple_Propeller": -9.216, "bp_simpleParams": [ 5.785, 2.864, 0.091, 7.231, -9.216, 36.320 ], "bp_params": [ 6.342, -1.204, 0.091, 0.205, -11.712, 36.498 ], "frame": { "rmsd": null, "origin": [ 199.148, 222.947, 196.930 ], "x_axis": [ 0.399, -0.008, 0.917 ], "y_axis": [ -0.072, -0.997, 0.022 ], "z_axis": [ 0.914, -0.075, -0.399 ], "quaternion": [ 0.029, 0.836, -0.024, 0.548 ] } }, { "index": 694, "nt1": "///2/1705", "nt2": "///2/1829", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.575, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 45.009, "chi2": -174.974, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.685, "C1C1_dist": 11.486, "N1N9_dist": 9.533, "C6C8_dist": 10.288, "CNNC_torsion": 23.985, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.60],N3-N1(imino)[3.36],N4(amino)-O6(carbonyl)[3.31]", "interBase_angle": 33.215, "planarity": 0.387, "simple_Shear": -0.377, "simple_Stretch": 0.361, "simple_Buckle": -12.627, "simple_Propeller": 30.722, "bp_simpleParams": [ -0.377, 0.361, -0.141, -12.627, 30.722, -7.037 ], "bp_params": [ -0.397, 0.338, -0.141, -14.179, 30.037, -7.233 ], "frame": { "rmsd": null, "origin": [ 202.763, 226.456, 195.441 ], "x_axis": [ 0.241, -0.437, 0.866 ], "y_axis": [ -0.208, -0.895, -0.394 ], "z_axis": [ 0.948, -0.085, -0.307 ], "quaternion": [ -0.099, 0.782, -0.206, 0.580 ] } }, { "index": 695, "nt1": "///2/1706", "nt2": "///2/1828", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.016, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.216, "chi2": -157.631, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.797, "C1C1_dist": 12.088, "N1N9_dist": 10.039, "C6C8_dist": 10.584, "CNNC_torsion": 2.175, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.19],N2(amino)-N3[3.75]", "interBase_angle": 6.144, "planarity": 0.103, "simple_Shear": 1.439, "simple_Stretch": 0.773, "simple_Buckle": -4.270, "simple_Propeller": 4.417, "bp_simpleParams": [ 1.439, 0.773, 0.172, -4.270, 4.417, -16.686 ], "bp_params": [ 1.537, 0.553, 0.172, -3.572, 4.998, -16.694 ], "frame": { "rmsd": null, "origin": [ 206.259, 228.023, 194.942 ], "x_axis": [ -0.161, -0.791, 0.590 ], "y_axis": [ -0.241, -0.548, -0.801 ], "z_axis": [ 0.957, -0.272, -0.103 ], "quaternion": [ -0.217, 0.610, -0.423, 0.634 ] } }, { "index": 696, "nt1": "///2/1706", "nt2": "///2/1849", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -172.016, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 104.470, "chi2": -171.841, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.014, "C1C1_dist": 10.497, "N1N9_dist": 10.767, "C6C8_dist": 12.977, "CNNC_torsion": -43.308, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N2(amino)[3.00]", "interBase_angle": 55.438, "planarity": 0.735, "simple_Shear": 0.206, "simple_Stretch": 6.514, "simple_Buckle": -37.114, "simple_Propeller": -41.182, "bp_simpleParams": [ 0.206, 6.514, -0.259, -37.114, -41.182, 97.719 ], "bp_params": [ 0.816, 6.466, -0.259, -40.639, -37.707, 97.148 ], "frame": { "rmsd": null, "origin": [ 206.266, 230.437, 194.533 ], "x_axis": [ -0.206, 0.073, 0.976 ], "y_axis": [ 0.029, -0.996, 0.081 ], "z_axis": [ 0.978, 0.045, 0.203 ], "quaternion": [ 0.014, 0.630, 0.041, 0.775 ] } }, { "index": 697, "nt1": "///2/1707", "nt2": "///2/1827", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.282, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.068, "chi2": -155.216, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.966, "C1C1_dist": 10.690, "N1N9_dist": 8.629, "C6C8_dist": 9.300, "CNNC_torsion": 14.839, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)*O4(carbonyl)[3.05]", "interBase_angle": 6.372, "planarity": 0.174, "simple_Shear": -1.058, "simple_Stretch": -0.647, "simple_Buckle": 1.293, "simple_Propeller": 6.240, "bp_simpleParams": [ -1.058, -0.647, -0.688, 1.293, 6.240, -19.027 ], "bp_params": [ -0.984, -0.756, -0.688, 0.623, 6.342, -19.056 ], "frame": { "rmsd": null, "origin": [ 210.314, 228.182, 195.360 ], "x_axis": [ -0.273, -0.924, 0.267 ], "y_axis": [ -0.181, -0.223, -0.958 ], "z_axis": [ 0.945, -0.310, -0.106 ], "quaternion": [ -0.315, 0.514, -0.538, 0.589 ] } }, { "index": 698, "nt1": "///2/1708", "nt2": "///2/1826", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.259, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.582, "chi2": -177.223, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.379, "C1C1_dist": 10.739, "N1N9_dist": 8.939, "C6C8_dist": 9.832, "CNNC_torsion": 7.103, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 6.638, "planarity": 0.110, "simple_Shear": 0.182, "simple_Stretch": -0.182, "simple_Buckle": 6.082, "simple_Propeller": 2.660, "bp_simpleParams": [ 0.182, -0.182, -0.537, 6.082, 2.660, -0.960 ], "bp_params": [ 0.179, -0.185, -0.537, 6.120, 2.572, -0.958 ], "frame": { "rmsd": null, "origin": [ 212.949, 225.490, 196.727 ], "x_axis": [ -0.369, -0.845, -0.387 ], "y_axis": [ 0.004, 0.415, -0.910 ], "z_axis": [ 0.929, -0.337, -0.150 ], "quaternion": [ 0.473, -0.302, 0.695, -0.448 ] } }, { "index": 699, "nt1": "///2/1710", "nt2": "///2/1823", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -174.555, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.121, "chi2": 33.292, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 27.994, "C1C1_dist": 10.822, "N1N9_dist": 8.691, "C6C8_dist": 8.484, "CNNC_torsion": 24.217, "hbonds_num": 2, "hbonds_desc": "N3-N6(amino)[3.34],N4(amino)*N6(amino)[3.00]", "unusual_base2base_hbonds": 1, "interBase_angle": 24.712, "planarity": 0.302, "simple_Shear": -2.578, "simple_Stretch": 1.331, "simple_Buckle": -20.608, "simple_Propeller": -13.639, "bp_simpleParams": [ -2.578, 1.331, 0.088, -20.608, -13.639, -100.570 ], "bp_params": [ 0.362, 2.878, 0.088, -19.858, 14.708, -100.182 ], "frame": { "rmsd": null, "origin": [ 216.193, 217.967, 194.928 ], "x_axis": [ -0.001, 0.919, -0.394 ], "y_axis": [ 0.920, 0.155, 0.360 ], "z_axis": [ 0.392, -0.363, -0.846 ], "quaternion": [ 0.278, 0.650, 0.707, -0.001 ] } }, { "index": 700, "nt1": "///2/1711", "nt2": "///2/1822", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.962, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.608, "chi2": -144.526, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.078, "C1C1_dist": 10.805, "N1N9_dist": 8.981, "C6C8_dist": 9.810, "CNNC_torsion": 12.642, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.95],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 12.795, "planarity": 0.267, "simple_Shear": -0.172, "simple_Stretch": -0.125, "simple_Buckle": -9.451, "simple_Propeller": 8.624, "bp_simpleParams": [ -0.172, -0.125, -0.730, -9.451, 8.624, -5.391 ], "bp_params": [ -0.169, -0.129, -0.730, -9.665, 8.384, -5.386 ], "frame": { "rmsd": null, "origin": [ 218.675, 214.612, 193.374 ], "x_axis": [ -0.462, 0.780, -0.422 ], "y_axis": [ 0.793, 0.576, 0.196 ], "z_axis": [ 0.396, -0.244, -0.885 ], "quaternion": [ 0.239, 0.460, 0.855, -0.014 ] } }, { "index": 701, "nt1": "///2/1712", "nt2": "///2/1821", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.687, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.820, "chi2": -159.341, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.212, "C1C1_dist": 10.615, "N1N9_dist": 8.898, "C6C8_dist": 9.856, "CNNC_torsion": -5.464, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.86]", "interBase_angle": 8.646, "planarity": 0.122, "simple_Shear": 0.035, "simple_Stretch": -0.085, "simple_Buckle": 2.318, "simple_Propeller": -8.330, "bp_simpleParams": [ 0.035, -0.085, -0.249, 2.318, -8.330, 1.498 ], "bp_params": [ 0.035, -0.085, -0.249, 2.246, -8.350, 1.501 ], "frame": { "rmsd": null, "origin": [ 219.144, 214.367, 190.265 ], "x_axis": [ -0.128, 0.989, 0.072 ], "y_axis": [ 0.916, 0.090, 0.391 ], "z_axis": [ 0.380, 0.116, -0.918 ], "quaternion": [ 0.106, 0.652, 0.731, 0.173 ] } }, { "index": 702, "nt1": "///2/1713", "nt2": "///2/1820", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -151.858, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.033, "chi2": -155.888, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.445, "C1C1_dist": 10.402, "N1N9_dist": 8.803, "C6C8_dist": 9.809, "CNNC_torsion": -3.975, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 17.946, "planarity": 0.230, "simple_Shear": 0.275, "simple_Stretch": -0.196, "simple_Buckle": 12.796, "simple_Propeller": -12.582, "bp_simpleParams": [ 0.275, -0.196, -0.923, 12.796, -12.582, 5.126 ], "bp_params": [ 0.272, -0.201, -0.923, 12.588, -12.791, 5.127 ], "frame": { "rmsd": null, "origin": [ 219.297, 215.099, 187.081 ], "x_axis": [ 0.366, 0.896, 0.253 ], "y_axis": [ 0.876, -0.423, 0.231 ], "z_axis": [ 0.314, 0.137, -0.940 ], "quaternion": [ 0.029, 0.826, 0.536, 0.171 ] } }, { "index": 703, "nt1": "///2/1715", "nt2": "///2/1818", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.406, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.195, "chi2": -158.250, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 62.693, "C1C1_dist": 12.420, "N1N9_dist": 10.763, "C6C8_dist": 11.575, "CNNC_torsion": -3.194, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.28]", "interBase_angle": 18.226, "planarity": 0.255, "simple_Shear": -1.319, "simple_Stretch": 1.978, "simple_Buckle": 15.649, "simple_Propeller": -9.343, "bp_simpleParams": [ -1.319, 1.978, -0.223, 15.649, -9.343, 1.860 ], "bp_params": [ -1.584, 1.773, -0.223, 16.821, -7.018, 1.843 ], "frame": { "rmsd": null, "origin": [ 221.759, 217.721, 180.403 ], "x_axis": [ 0.752, 0.252, 0.609 ], "y_axis": [ 0.305, -0.952, 0.018 ], "z_axis": [ 0.584, 0.172, -0.793 ], "quaternion": [ -0.041, 0.935, 0.149, 0.319 ] } }, { "index": 704, "nt1": "///2/1716", "nt2": "///2/1817", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.924, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.754, "chi2": -162.370, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.177, "C1C1_dist": 10.551, "N1N9_dist": 8.710, "C6C8_dist": 9.516, "CNNC_torsion": -7.587, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.63],N4(amino)-O6(carbonyl)[2.40]", "interBase_angle": 21.651, "planarity": 0.251, "simple_Shear": -0.069, "simple_Stretch": -0.473, "simple_Buckle": 11.937, "simple_Propeller": -18.063, "bp_simpleParams": [ -0.069, -0.473, -0.714, 11.937, -18.063, -3.420 ], "bp_params": [ -0.060, -0.474, -0.714, 12.251, -17.851, -3.443 ], "frame": { "rmsd": null, "origin": [ 223.622, 219.449, 177.302 ], "x_axis": [ 0.772, -0.385, 0.506 ], "y_axis": [ -0.226, -0.910, -0.348 ], "z_axis": [ 0.594, 0.154, -0.789 ], "quaternion": [ -0.135, 0.932, -0.164, 0.295 ] } }, { "index": 705, "nt1": "///2/1717", "nt2": "///2/1816", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.774, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.018, "chi2": -172.266, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.532, "C1C1_dist": 10.678, "N1N9_dist": 8.951, "C6C8_dist": 9.902, "CNNC_torsion": 1.068, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 5.481, "planarity": 0.098, "simple_Shear": 0.194, "simple_Stretch": -0.119, "simple_Buckle": 4.338, "simple_Propeller": 3.350, "bp_simpleParams": [ 0.194, -0.119, 0.113, 4.338, 3.350, 1.113 ], "bp_params": [ 0.192, -0.122, 0.113, 4.388, 3.283, 1.113 ], "frame": { "rmsd": null, "origin": [ 226.844, 220.213, 175.380 ], "x_axis": [ 0.336, -0.856, 0.392 ], "y_axis": [ -0.638, -0.513, -0.574 ], "z_axis": [ 0.693, -0.057, -0.719 ], "quaternion": [ -0.161, 0.801, -0.466, 0.339 ] } }, { "index": 706, "nt1": "///2/1718", "nt2": "///2/1815", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -171.203, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 89.111, "chi2": -179.091, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 2.069, "C1C1_dist": 9.632, "N1N9_dist": 8.275, "C6C8_dist": 8.445, "CNNC_torsion": -173.046, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.87],N2(amino)-N7[2.42]", "interBase_angle": 7.362, "planarity": 0.130, "simple_Shear": 7.797, "simple_Stretch": 2.750, "simple_Buckle": 6.095, "simple_Propeller": 4.128, "bp_simpleParams": [ 7.797, 2.750, -0.313, 6.095, 4.128, -21.803 ], "bp_params": [ 6.816, -4.679, -0.313, 6.927, -2.494, -21.769 ], "frame": { "rmsd": null, "origin": [ 230.109, 221.448, 173.936 ], "x_axis": [ -0.391, -0.866, -0.313 ], "y_axis": [ -0.584, 0.496, -0.642 ], "z_axis": [ 0.711, -0.068, -0.700 ], "quaternion": [ 0.318, -0.451, 0.804, -0.221 ] } }, { "index": 707, "nt1": "///2/1720", "nt2": "///2/1813", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.131, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.348, "chi2": 176.189, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.160, "C1C1_dist": 10.412, "N1N9_dist": 8.790, "C6C8_dist": 9.824, "CNNC_torsion": -3.252, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.80],O4(carbonyl)-N6(amino)[3.03]", "interBase_angle": 2.053, "planarity": 0.088, "simple_Shear": -0.000, "simple_Stretch": -0.124, "simple_Buckle": 1.983, "simple_Propeller": 0.531, "bp_simpleParams": [ -0.000, -0.124, 0.338, 1.983, 0.531, 4.137 ], "bp_params": [ 0.000, -0.124, 0.338, 1.980, 0.542, 4.137 ], "frame": { "rmsd": null, "origin": [ 235.708, 217.495, 170.192 ], "x_axis": [ -0.697, -0.490, -0.523 ], "y_axis": [ -0.204, 0.835, -0.511 ], "z_axis": [ 0.687, -0.250, -0.682 ], "quaternion": [ 0.338, -0.194, 0.896, -0.212 ] } }, { "index": 708, "nt1": "///2/1722", "nt2": "///2/1812", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.774, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.803, "chi2": -160.874, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.300, "C1C1_dist": 9.845, "N1N9_dist": 7.997, "C6C8_dist": 8.749, "CNNC_torsion": 21.907, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[2.39]", "interBase_angle": 7.206, "planarity": 0.378, "simple_Shear": -0.301, "simple_Stretch": -1.374, "simple_Buckle": -6.034, "simple_Propeller": 3.940, "bp_simpleParams": [ -0.301, -1.374, -1.650, -6.034, 3.940, -9.028 ], "bp_params": [ -0.263, -1.381, -1.650, -6.139, 3.774, -9.020 ], "frame": { "rmsd": null, "origin": [ 236.130, 211.780, 168.851 ], "x_axis": [ -0.917, -0.029, -0.399 ], "y_axis": [ 0.300, 0.611, -0.732 ], "z_axis": [ 0.265, -0.791, -0.552 ], "quaternion": [ 0.189, 0.077, 0.877, -0.434 ] } }, { "index": 709, "nt1": "///2/1723", "nt2": "///2/1811", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.579, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.407, "chi2": -159.972, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.235, "C1C1_dist": 10.720, "N1N9_dist": 8.897, "C6C8_dist": 9.755, "CNNC_torsion": 15.534, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 8.633, "planarity": 0.209, "simple_Shear": -0.098, "simple_Stretch": -0.301, "simple_Buckle": -4.763, "simple_Propeller": 7.200, "bp_simpleParams": [ -0.098, -0.301, -0.970, -4.763, 7.200, -3.478 ], "bp_params": [ -0.096, -0.301, -0.970, -4.807, 7.171, -3.482 ], "frame": { "rmsd": null, "origin": [ 236.289, 208.022, 167.121 ], "x_axis": [ -0.670, 0.306, -0.676 ], "y_axis": [ 0.699, 0.566, -0.437 ], "z_axis": [ 0.248, -0.765, -0.594 ], "quaternion": [ 0.275, 0.299, 0.841, -0.357 ] } }, { "index": 710, "nt1": "///2/1724", "nt2": "///2/1810", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.570, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.533, "chi2": 177.856, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.607, "C1C1_dist": 10.719, "N1N9_dist": 8.922, "C6C8_dist": 9.850, "CNNC_torsion": 6.141, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.85]", "interBase_angle": 7.058, "planarity": 0.092, "simple_Shear": 0.095, "simple_Stretch": -0.093, "simple_Buckle": -0.071, "simple_Propeller": 7.058, "bp_simpleParams": [ 0.095, -0.093, -0.152, -0.071, 7.058, -0.355 ], "bp_params": [ 0.094, -0.094, -0.152, 0.030, 7.058, -0.354 ], "frame": { "rmsd": null, "origin": [ 235.132, 205.736, 164.136 ], "x_axis": [ -0.132, 0.654, -0.745 ], "y_axis": [ 0.968, 0.247, 0.045 ], "z_axis": [ 0.213, -0.715, -0.666 ], "quaternion": [ 0.335, 0.567, 0.715, -0.234 ] } }, { "index": 711, "nt1": "///2/1725", "nt2": "///2/1809", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.991, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.394, "chi2": -166.351, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.689, "C1C1_dist": 10.449, "N1N9_dist": 8.799, "C6C8_dist": 9.794, "CNNC_torsion": -0.684, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[3.00]", "interBase_angle": 6.820, "planarity": 0.170, "simple_Shear": 0.040, "simple_Stretch": -0.162, "simple_Buckle": 4.320, "simple_Propeller": 5.278, "bp_simpleParams": [ 0.040, -0.162, 0.580, 4.320, 5.278, 2.920 ], "bp_params": [ 0.040, -0.162, 0.580, 4.316, 5.281, 2.921 ], "frame": { "rmsd": null, "origin": [ 234.146, 203.720, 160.760 ], "x_axis": [ 0.321, 0.736, -0.596 ], "y_axis": [ 0.919, -0.091, 0.383 ], "z_axis": [ 0.228, -0.671, -0.706 ], "quaternion": [ 0.362, 0.728, 0.569, -0.127 ] } }, { "index": 712, "nt1": "///2/1726", "nt2": "///2/1808", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.923, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.481, "chi2": -161.096, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 74.399, "C1C1_dist": 10.413, "N1N9_dist": 8.921, "C6C8_dist": 9.935, "CNNC_torsion": 5.620, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.09],N1(imino)-O2(carbonyl)[2.81]", "interBase_angle": 2.027, "planarity": 0.102, "simple_Shear": -2.918, "simple_Stretch": 0.350, "simple_Buckle": -0.688, "simple_Propeller": 1.906, "bp_simpleParams": [ -2.918, 0.350, -0.549, -0.688, 1.906, 5.232 ], "bp_params": [ -2.896, -0.502, -0.549, -1.207, 1.629, 5.232 ], "frame": { "rmsd": null, "origin": [ 234.353, 204.211, 157.410 ], "x_axis": [ 0.386, 0.871, 0.304 ], "y_axis": [ 0.778, -0.484, 0.399 ], "z_axis": [ 0.495, 0.083, -0.865 ], "quaternion": [ 0.096, 0.827, 0.499, 0.242 ] } }, { "index": 713, "nt1": "///2/1727", "nt2": "///2/1807", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.902, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.511, "chi2": -159.635, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.819, "C1C1_dist": 10.632, "N1N9_dist": 8.779, "C6C8_dist": 9.622, "CNNC_torsion": 15.178, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.95],N2(amino)-O2(carbonyl)[2.84]", "interBase_angle": 9.667, "planarity": 0.382, "simple_Shear": -0.119, "simple_Stretch": -0.470, "simple_Buckle": 8.490, "simple_Propeller": 4.623, "bp_simpleParams": [ -0.119, -0.470, -1.353, 8.490, 4.623, -3.574 ], "bp_params": [ -0.117, -0.470, -1.353, 8.466, 4.666, -3.567 ], "frame": { "rmsd": null, "origin": [ 234.282, 204.334, 153.609 ], "x_axis": [ 0.761, 0.367, 0.535 ], "y_axis": [ 0.362, -0.925, 0.119 ], "z_axis": [ 0.538, 0.104, -0.836 ], "quaternion": [ 0.004, 0.938, 0.194, 0.286 ] } }, { "index": 714, "nt1": "///2/1728", "nt2": "///2/1807", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -136.681, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 74.516, "chi2": -159.635, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.299, "C1C1_dist": 8.160, "N1N9_dist": 7.169, "C6C8_dist": 8.783, "CNNC_torsion": -2.352, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[3.18],N3(imino)-N3[3.72]", "unusual_base2base_hbonds": 1, "interBase_angle": 31.055, "planarity": 0.336, "simple_Shear": 0.479, "simple_Stretch": -0.647, "simple_Buckle": 29.892, "simple_Propeller": 8.421, "bp_simpleParams": [ 0.479, -0.647, 0.840, 29.892, 8.421, 32.319 ], "bp_params": [ 0.440, -0.674, 0.840, 30.373, 6.471, 31.296 ], "frame": { "rmsd": null, "origin": [ 235.109, 204.664, 152.963 ], "x_axis": [ 0.813, 0.065, 0.579 ], "y_axis": [ 0.216, -0.956, -0.196 ], "z_axis": [ 0.541, 0.284, -0.792 ], "quaternion": [ -0.127, 0.944, 0.075, 0.297 ] } }, { "index": 715, "nt1": "///2/1729", "nt2": "///2/1806", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -136.656, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.435, "chi2": -157.959, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.571, "C1C1_dist": 9.357, "N1N9_dist": 7.973, "C6C8_dist": 9.062, "CNNC_torsion": -12.564, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.97],O4(carbonyl)-N6(amino)[3.20]", "interBase_angle": 36.231, "planarity": 0.644, "simple_Shear": -0.046, "simple_Stretch": -0.471, "simple_Buckle": 36.162, "simple_Propeller": -2.234, "bp_simpleParams": [ -0.046, -0.471, 1.378, 36.162, -2.234, 9.722 ], "bp_params": [ -0.040, -0.471, 1.378, 36.192, -1.669, 9.245 ], "frame": { "rmsd": null, "origin": [ 236.520, 205.724, 149.048 ], "x_axis": [ 0.797, -0.325, 0.509 ], "y_axis": [ -0.093, -0.899, -0.429 ], "z_axis": [ 0.597, 0.294, -0.747 ], "quaternion": [ -0.195, 0.928, -0.113, 0.298 ] } }, { "index": 716, "nt1": "///2/1730", "nt2": "///2/1804", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.007, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 34.911, "chi2": -162.113, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 71.304, "C1C1_dist": 9.872, "N1N9_dist": 8.204, "C6C8_dist": 9.169, "CNNC_torsion": -12.244, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N3(imino)[3.14]", "interBase_angle": 24.069, "planarity": 0.279, "simple_Shear": -3.192, "simple_Stretch": -0.309, "simple_Buckle": 9.476, "simple_Propeller": -22.125, "bp_simpleParams": [ -3.192, -0.309, 0.006, 9.476, -22.125, -2.371 ], "bp_params": [ -2.912, -1.344, 0.006, 16.174, -17.824, -2.377 ], "frame": { "rmsd": null, "origin": [ 241.773, 207.210, 145.507 ], "x_axis": [ 0.322, -0.816, 0.481 ], "y_axis": [ -0.723, -0.540, -0.432 ], "z_axis": [ 0.612, -0.208, -0.763 ], "quaternion": [ -0.069, 0.810, -0.475, 0.337 ] } }, { "index": 717, "nt1": "///2/1731", "nt2": "///2/1803", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.235, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.200, "chi2": -167.993, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.860, "C1C1_dist": 10.395, "N1N9_dist": 8.788, "C6C8_dist": 9.829, "CNNC_torsion": 9.223, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.04],N1-N3(imino)[2.79]", "interBase_angle": 12.687, "planarity": 0.152, "simple_Shear": 0.004, "simple_Stretch": -0.114, "simple_Buckle": 2.386, "simple_Propeller": 12.460, "bp_simpleParams": [ 0.004, -0.114, -0.014, 2.386, 12.460, 4.188 ], "bp_params": [ 0.003, -0.114, -0.014, 2.461, 12.446, 4.212 ], "frame": { "rmsd": null, "origin": [ 244.820, 206.008, 143.475 ], "x_axis": [ -0.536, -0.797, 0.278 ], "y_axis": [ -0.703, 0.238, -0.670 ], "z_axis": [ 0.468, -0.555, -0.688 ], "quaternion": [ 0.060, -0.478, 0.785, -0.390 ] } }, { "index": 718, "nt1": "///2/1732", "nt2": "///2/1802", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.615, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.845, "chi2": -160.848, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.712, "C1C1_dist": 10.592, "N1N9_dist": 8.887, "C6C8_dist": 9.836, "CNNC_torsion": 4.532, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 6.108, "planarity": 0.198, "simple_Shear": -0.185, "simple_Stretch": -0.235, "simple_Buckle": -4.436, "simple_Propeller": -4.199, "bp_simpleParams": [ -0.185, -0.235, -0.964, -4.436, -4.199, 1.598 ], "bp_params": [ -0.182, -0.237, -0.964, -4.382, -4.255, 1.598 ], "frame": { "rmsd": null, "origin": [ 247.080, 202.997, 142.780 ], "x_axis": [ -0.920, -0.389, 0.045 ], "y_axis": [ -0.241, 0.473, -0.848 ], "z_axis": [ 0.308, -0.791, -0.529 ], "quaternion": [ 0.077, -0.184, 0.855, -0.479 ] } }, { "index": 719, "nt1": "///2/1733", "nt2": "///2/1801", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.651, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.827, "chi2": -163.182, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.443, "C1C1_dist": 10.527, "N1N9_dist": 8.795, "C6C8_dist": 9.750, "CNNC_torsion": 5.410, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.86],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 3.483, "planarity": 0.217, "simple_Shear": -0.084, "simple_Stretch": -0.242, "simple_Buckle": -1.656, "simple_Propeller": -3.064, "bp_simpleParams": [ -0.084, -0.242, -0.950, -1.656, -3.064, 1.203 ], "bp_params": [ -0.081, -0.243, -0.950, -1.615, -3.086, 1.203 ], "frame": { "rmsd": null, "origin": [ 248.015, 199.019, 142.511 ], "x_axis": [ -0.929, -0.121, -0.349 ], "y_axis": [ 0.214, 0.594, -0.776 ], "z_axis": [ 0.301, -0.796, -0.526 ], "quaternion": [ 0.186, 0.027, 0.873, -0.450 ] } }, { "index": 720, "nt1": "///2/1734", "nt2": "///2/1800", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -168.296, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.385, "chi2": -166.851, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.110, "C1C1_dist": 9.727, "N1N9_dist": 8.578, "C6C8_dist": 9.097, "CNNC_torsion": 54.386, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.69],N2(amino)-N7[2.97],N3-N6(amino)[2.89]", "interBase_angle": 2.455, "planarity": 0.138, "simple_Shear": 7.290, "simple_Stretch": 2.444, "simple_Buckle": 0.300, "simple_Propeller": -2.436, "bp_simpleParams": [ 7.290, 2.444, -0.656, 0.300, -2.436, 0.126 ], "bp_params": [ 6.714, -3.747, -0.656, -1.600, -1.862, 0.126 ], "frame": { "rmsd": null, "origin": [ 248.894, 195.651, 140.875 ], "x_axis": [ -0.304, 0.473, -0.827 ], "y_axis": [ 0.900, 0.428, -0.085 ], "z_axis": [ 0.314, -0.770, -0.556 ], "quaternion": [ 0.377, 0.454, 0.756, -0.282 ] } }, { "index": 721, "nt1": "///2/1735", "nt2": "///2/1799", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 178.030, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 3.510, "chi2": -179.844, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.634, "C1C1_dist": 10.264, "N1N9_dist": 8.790, "C6C8_dist": 8.895, "CNNC_torsion": 171.295, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.85],N6(amino)-O2'(hydroxyl)[3.23]", "interBase_angle": 9.724, "planarity": 0.271, "simple_Shear": -7.608, "simple_Stretch": 3.022, "simple_Buckle": -8.271, "simple_Propeller": 5.113, "bp_simpleParams": [ -7.608, 3.022, -1.185, -8.271, 5.113, -25.584 ], "bp_params": [ -7.016, -4.216, -1.185, -9.080, -3.481, -25.518 ], "frame": { "rmsd": null, "origin": [ 249.923, 191.950, 139.768 ], "x_axis": [ -0.613, 0.512, -0.602 ], "y_axis": [ 0.740, 0.639, -0.210 ], "z_axis": [ 0.277, -0.574, -0.770 ], "quaternion": [ 0.253, 0.360, 0.869, -0.226 ] } }, { "index": 722, "nt1": "///2/1736", "nt2": "///2/1798", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.351, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.216, "chi2": -154.999, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.061, "C1C1_dist": 11.522, "N1N9_dist": 9.550, "C6C8_dist": 10.234, "CNNC_torsion": 8.505, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[3.35],N2(amino)-O2(carbonyl)[3.61]", "interBase_angle": 10.620, "planarity": 0.144, "simple_Shear": 0.424, "simple_Stretch": 0.281, "simple_Buckle": -8.979, "simple_Propeller": 5.671, "bp_simpleParams": [ 0.424, 0.281, -0.463, -8.979, 5.671, -10.844 ], "bp_params": [ 0.436, 0.262, -0.463, -8.722, 6.058, -10.828 ], "frame": { "rmsd": null, "origin": [ 249.756, 188.702, 137.479 ], "x_axis": [ 0.226, 0.852, -0.472 ], "y_axis": [ 0.912, -0.015, 0.409 ], "z_axis": [ 0.342, -0.523, -0.781 ], "quaternion": [ 0.328, 0.711, 0.620, -0.046 ] } }, { "index": 723, "nt1": "///2/1737", "nt2": "///2/1797", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.014, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.966, "chi2": -163.659, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.512, "C1C1_dist": 11.477, "N1N9_dist": 9.453, "C6C8_dist": 10.069, "CNNC_torsion": 9.081, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)*O4(carbonyl)[2.81],N1(imino)*N3(imino)[3.33],N2(amino)-O2(carbonyl)[3.60]", "unusual_base2base_hbonds": 1, "interBase_angle": 5.724, "planarity": 0.129, "simple_Shear": 0.249, "simple_Stretch": 0.135, "simple_Buckle": -0.353, "simple_Propeller": 5.713, "bp_simpleParams": [ 0.249, 0.135, -0.504, -0.353, 5.713, -14.916 ], "bp_params": [ 0.252, 0.128, -0.504, -0.189, 5.721, -14.935 ], "frame": { "rmsd": null, "origin": [ 249.763, 187.302, 134.252 ], "x_axis": [ 0.654, 0.741, -0.151 ], "y_axis": [ 0.659, -0.459, 0.596 ], "z_axis": [ 0.372, -0.490, -0.788 ], "quaternion": [ 0.319, 0.852, 0.411, 0.065 ] } }, { "index": 724, "nt1": "///2/1738", "nt2": "///2/1796", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.453, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.744, "chi2": -164.544, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.433, "C1C1_dist": 10.778, "N1N9_dist": 8.962, "C6C8_dist": 9.860, "CNNC_torsion": 4.343, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 4.610, "planarity": 0.075, "simple_Shear": 0.169, "simple_Stretch": -0.158, "simple_Buckle": 4.162, "simple_Propeller": 1.983, "bp_simpleParams": [ 0.169, -0.158, -0.369, 4.162, 1.983, -0.882 ], "bp_params": [ 0.167, -0.160, -0.369, 4.187, 1.931, -0.881 ], "frame": { "rmsd": null, "origin": [ 250.902, 187.173, 130.783 ], "x_axis": [ 0.888, 0.408, 0.214 ], "y_axis": [ 0.212, -0.774, 0.596 ], "z_axis": [ 0.409, -0.483, -0.774 ], "quaternion": [ 0.291, 0.927, 0.167, 0.168 ] } }, { "index": 725, "nt1": "///2/1739", "nt2": "///2/1795", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.975, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.391, "chi2": 179.645, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.632, "C1C1_dist": 10.711, "N1N9_dist": 8.954, "C6C8_dist": 9.892, "CNNC_torsion": 10.646, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 12.013, "planarity": 0.160, "simple_Shear": 0.182, "simple_Stretch": -0.131, "simple_Buckle": 3.462, "simple_Propeller": 11.503, "bp_simpleParams": [ 0.182, -0.131, -0.224, 3.462, 11.503, 0.371 ], "bp_params": [ 0.180, -0.134, -0.224, 3.625, 11.453, 0.373 ], "frame": { "rmsd": null, "origin": [ 253.006, 187.401, 127.635 ], "x_axis": [ 0.769, -0.043, 0.638 ], "y_axis": [ -0.328, -0.883, 0.336 ], "z_axis": [ 0.549, -0.467, -0.693 ], "quaternion": [ 0.219, 0.914, -0.101, 0.325 ] } }, { "index": 726, "nt1": "///2/1740", "nt2": "///2/1794", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.619, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.145, "chi2": -160.629, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 36.444, "C1C1_dist": 10.826, "N1N9_dist": 8.819, "C6C8_dist": 9.494, "CNNC_torsion": 16.040, "hbonds_num": 1, "hbonds_desc": "N3-N4(amino)[3.54]", "interBase_angle": 9.601, "planarity": 0.240, "simple_Shear": 2.145, "simple_Stretch": -0.369, "simple_Buckle": -8.883, "simple_Propeller": -3.643, "bp_simpleParams": [ 2.145, -0.369, -1.224, -8.883, -3.643, -15.083 ], "bp_params": [ 2.016, -0.820, -1.224, -9.459, -1.646, -15.034 ], "frame": { "rmsd": null, "origin": [ 255.826, 187.598, 124.623 ], "x_axis": [ 0.259, -0.511, 0.820 ], "y_axis": [ -0.561, -0.770, -0.304 ], "z_axis": [ 0.787, -0.381, -0.486 ], "quaternion": [ 0.024, 0.793, -0.338, 0.506 ] } }, { "index": 727, "nt1": "///2/1741", "nt2": "///2/1793", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.210, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.157, "chi2": -166.936, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.881, "C1C1_dist": 10.595, "N1N9_dist": 8.839, "C6C8_dist": 9.731, "CNNC_torsion": 12.626, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[2.94]", "interBase_angle": 4.574, "planarity": 0.250, "simple_Shear": -0.180, "simple_Stretch": -0.276, "simple_Buckle": -0.592, "simple_Propeller": 4.535, "bp_simpleParams": [ -0.180, -0.276, -1.093, -0.592, 4.535, -2.625 ], "bp_params": [ -0.174, -0.280, -1.093, -0.694, 4.521, -2.627 ], "frame": { "rmsd": null, "origin": [ 259.336, 186.794, 124.584 ], "x_axis": [ -0.072, -0.784, 0.617 ], "y_axis": [ -0.594, -0.463, -0.658 ], "z_axis": [ 0.801, -0.414, -0.432 ], "quaternion": [ -0.090, 0.675, -0.510, 0.525 ] } }, { "index": 728, "nt1": "///2/1742", "nt2": "///2/1792", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.269, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.340, "chi2": -169.250, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.079, "C1C1_dist": 11.035, "N1N9_dist": 9.249, "C6C8_dist": 10.150, "CNNC_torsion": -3.037, "hbonds_num": 4, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.05],N3-N1(imino)[3.13],N3-N2(amino)[3.27],N4(amino)-O6(carbonyl)[3.07]", "interBase_angle": 6.219, "planarity": 0.102, "simple_Shear": -0.645, "simple_Stretch": 0.142, "simple_Buckle": 0.038, "simple_Propeller": -6.219, "bp_simpleParams": [ -0.645, 0.142, -0.275, 0.038, -6.219, -1.069 ], "bp_params": [ -0.654, 0.098, -0.275, 0.467, -6.201, -1.071 ], "frame": { "rmsd": null, "origin": [ 262.800, 184.789, 125.430 ], "x_axis": [ -0.448, -0.828, 0.338 ], "y_axis": [ -0.443, -0.123, -0.888 ], "z_axis": [ 0.777, -0.547, -0.312 ], "quaternion": [ 0.171, -0.497, 0.640, -0.561 ] } }, { "index": 729, "nt1": "///2/1743", "nt2": "///2/1791", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 179.093, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.531, "chi2": -171.428, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 15.278, "C1C1_dist": 10.738, "N1N9_dist": 9.268, "C6C8_dist": 9.704, "CNNC_torsion": 34.789, "hbonds_num": 3, "hbonds_desc": "N2(amino)-N7[2.90],N2(amino)*N6(amino)[2.44],N3-N6(amino)[2.82]", "unusual_base2base_hbonds": 1, "interBase_angle": 4.730, "planarity": 0.176, "simple_Shear": 6.498, "simple_Stretch": 2.313, "simple_Buckle": -1.748, "simple_Propeller": -4.395, "bp_simpleParams": [ 6.498, 2.313, -0.799, -1.748, -4.395, -8.811 ], "bp_params": [ 6.400, -2.573, -0.799, -4.221, -2.134, -8.806 ], "frame": { "rmsd": null, "origin": [ 266.308, 183.080, 125.349 ], "x_axis": [ -0.609, -0.524, -0.596 ], "y_axis": [ 0.179, 0.641, -0.746 ], "z_axis": [ 0.773, -0.562, -0.296 ], "quaternion": [ 0.429, -0.108, 0.798, -0.410 ] } }, { "index": 730, "nt1": "///2/1744", "nt2": "///2/1790", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -69.619, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 99.826, "chi2": -173.225, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.308, "C1C1_dist": 9.204, "N1N9_dist": 8.110, "C6C8_dist": 8.496, "CNNC_torsion": -80.311, "hbonds_num": 2, "hbonds_desc": "O4'-N6(amino)[2.69],N2(amino)-N7[3.14]", "interBase_angle": 37.126, "planarity": 0.571, "simple_Shear": 7.537, "simple_Stretch": 2.524, "simple_Buckle": -2.864, "simple_Propeller": 37.015, "bp_simpleParams": [ 7.537, 2.524, 1.155, -2.864, 37.015, 2.825 ], "bp_params": [ 6.510, -4.561, 1.155, 28.131, 24.228, 2.807 ], "frame": { "rmsd": null, "origin": [ 267.398, 180.176, 124.305 ], "x_axis": [ -0.525, 0.089, -0.846 ], "y_axis": [ 0.689, 0.628, -0.362 ], "z_axis": [ 0.499, -0.773, -0.391 ], "quaternion": [ 0.422, 0.244, 0.797, -0.356 ] } }, { "index": 731, "nt1": "///2/1745", "nt2": "///2/1789", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -176.398, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.015, "chi2": -159.037, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.653, "C1C1_dist": 9.871, "N1N9_dist": 8.603, "C6C8_dist": 9.019, "CNNC_torsion": 92.964, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.90],N6(amino)-O2'(hydroxyl)[3.10],N6(amino)-N3[2.95]", "interBase_angle": 5.579, "planarity": 0.234, "simple_Shear": -7.238, "simple_Stretch": 2.304, "simple_Buckle": -5.518, "simple_Propeller": 0.825, "bp_simpleParams": [ -7.238, 2.304, -1.093, -5.518, 0.825, -6.282 ], "bp_params": [ -6.596, -3.767, -1.093, -4.342, -3.503, -6.281 ], "frame": { "rmsd": null, "origin": [ 269.680, 176.505, 124.320 ], "x_axis": [ -0.683, -0.144, -0.716 ], "y_axis": [ 0.453, 0.685, -0.570 ], "z_axis": [ 0.573, -0.714, -0.402 ], "quaternion": [ 0.387, 0.093, 0.832, -0.386 ] } }, { "index": 732, "nt1": "///2/1746", "nt2": "///2/1788", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.430, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.001, "chi2": -165.075, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.909, "C1C1_dist": 10.454, "N1N9_dist": 8.819, "C6C8_dist": 9.820, "CNNC_torsion": 5.017, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.85],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 2.099, "planarity": 0.164, "simple_Shear": -0.053, "simple_Stretch": -0.154, "simple_Buckle": -2.097, "simple_Propeller": 0.070, "bp_simpleParams": [ -0.053, -0.154, -0.703, -2.097, 0.070, 2.430 ], "bp_params": [ -0.052, -0.155, -0.703, -2.098, 0.049, 2.429 ], "frame": { "rmsd": null, "origin": [ 271.190, 173.381, 122.326 ], "x_axis": [ 0.004, 0.526, -0.850 ], "y_axis": [ 0.801, 0.507, 0.318 ], "z_axis": [ 0.599, -0.682, -0.419 ], "quaternion": [ 0.523, 0.479, 0.693, -0.131 ] } }, { "index": 733, "nt1": "///2/1747", "nt2": "///2/1787", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.180, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.171, "chi2": -166.059, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.027, "C1C1_dist": 10.641, "N1N9_dist": 8.949, "C6C8_dist": 9.909, "CNNC_torsion": -1.015, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 0.739, "planarity": 0.016, "simple_Shear": 0.181, "simple_Stretch": -0.118, "simple_Buckle": -0.000, "simple_Propeller": -0.739, "bp_simpleParams": [ 0.181, -0.118, -0.050, -0.000, -0.739, 1.201 ], "bp_params": [ 0.179, -0.120, -0.050, -0.010, -0.739, 1.201 ], "frame": { "rmsd": null, "origin": [ 272.037, 170.507, 120.154 ], "x_axis": [ 0.396, 0.740, -0.544 ], "y_axis": [ 0.675, 0.168, 0.719 ], "z_axis": [ 0.623, -0.652, -0.433 ], "quaternion": [ 0.532, 0.644, 0.549, 0.030 ] } }, { "index": 734, "nt1": "///2/1748", "nt2": "///2/1786", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.675, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 32.429, "chi2": -159.127, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 77.366, "C1C1_dist": 10.182, "N1N9_dist": 8.638, "C6C8_dist": 9.475, "CNNC_torsion": 6.317, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)*O2(carbonyl)[2.34],O6(carbonyl)-N3(imino)[2.93],N1(imino)-O2(carbonyl)[2.91]", "unusual_base2base_hbonds": 1, "interBase_angle": 5.547, "planarity": 0.197, "simple_Shear": -4.113, "simple_Stretch": 0.325, "simple_Buckle": 2.518, "simple_Propeller": -4.943, "bp_simpleParams": [ -4.113, 0.325, -0.742, 2.518, -4.943, 0.026 ], "bp_params": [ -3.889, -1.379, -0.742, 4.313, -3.489, 0.026 ], "frame": { "rmsd": null, "origin": [ 272.842, 169.417, 116.288 ], "x_axis": [ 0.272, 0.935, -0.227 ], "y_axis": [ 0.670, -0.015, 0.742 ], "z_axis": [ 0.690, -0.354, -0.631 ], "quaternion": [ 0.396, 0.693, 0.580, 0.167 ] } }, { "index": 735, "nt1": "///2/1749", "nt2": "///2/1785", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -147.040, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.891, "chi2": -162.061, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.578, "C1C1_dist": 10.493, "N1N9_dist": 8.786, "C6C8_dist": 9.765, "CNNC_torsion": -1.996, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 14.224, "planarity": 0.330, "simple_Shear": -0.210, "simple_Stretch": -0.244, "simple_Buckle": 10.085, "simple_Propeller": -10.031, "bp_simpleParams": [ -0.210, -0.244, -0.764, 10.085, -10.031, 3.775 ], "bp_params": [ -0.205, -0.248, -0.764, 10.281, -9.829, 3.774 ], "frame": { "rmsd": null, "origin": [ 274.981, 168.162, 113.240 ], "x_axis": [ 0.686, 0.633, 0.358 ], "y_axis": [ 0.288, -0.689, 0.665 ], "z_axis": [ 0.668, -0.353, -0.655 ], "quaternion": [ 0.293, 0.870, 0.265, 0.295 ] } }, { "index": 736, "nt1": "///2/1750", "nt2": "///2/1784", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.598, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.161, "chi2": -174.405, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.229, "C1C1_dist": 10.528, "N1N9_dist": 8.660, "C6C8_dist": 9.437, "CNNC_torsion": -15.947, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.11],N3-N1(imino)[2.68],N4(amino)-O6(carbonyl)[2.45]", "interBase_angle": 30.754, "planarity": 0.354, "simple_Shear": 0.516, "simple_Stretch": -0.532, "simple_Buckle": 14.011, "simple_Propeller": -27.377, "bp_simpleParams": [ 0.516, -0.532, -0.689, 14.011, -27.377, -3.399 ], "bp_params": [ 0.498, -0.549, -0.689, 12.908, -27.914, -3.481 ], "frame": { "rmsd": null, "origin": [ 277.731, 168.452, 110.248 ], "x_axis": [ 0.800, 0.129, 0.587 ], "y_axis": [ -0.076, -0.947, 0.312 ], "z_axis": [ 0.596, -0.294, -0.747 ], "quaternion": [ 0.162, 0.935, 0.014, 0.316 ] } }, { "index": 737, "nt1": "///2/1751", "nt2": "///2/1782", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.528, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.680, "chi2": -149.980, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.102, "C1C1_dist": 10.696, "N1N9_dist": 8.896, "C6C8_dist": 9.787, "CNNC_torsion": 17.119, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 17.971, "planarity": 0.237, "simple_Shear": 0.231, "simple_Stretch": -0.208, "simple_Buckle": -7.818, "simple_Propeller": 16.182, "bp_simpleParams": [ 0.231, -0.208, -0.336, -7.818, 16.182, -1.298 ], "bp_params": [ 0.228, -0.211, -0.336, -7.553, 16.307, -1.309 ], "frame": { "rmsd": null, "origin": [ 281.325, 167.395, 106.810 ], "x_axis": [ -0.288, 0.061, 0.956 ], "y_axis": [ -0.544, -0.831, -0.111 ], "z_axis": [ 0.788, -0.552, 0.273 ], "quaternion": [ 0.196, 0.564, -0.215, 0.773 ] } }, { "index": 738, "nt1": "///2/1753", "nt2": "///2/1779", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -142.294, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.857, "chi2": -114.947, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.181, "C1C1_dist": 10.348, "N1N9_dist": 8.575, "C6C8_dist": 9.368, "CNNC_torsion": 15.944, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.90],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.72]", "interBase_angle": 2.497, "planarity": 0.437, "simple_Shear": -0.102, "simple_Stretch": -0.854, "simple_Buckle": 2.400, "simple_Propeller": 0.690, "bp_simpleParams": [ -0.102, -0.854, -1.958, 2.400, 0.690, -6.538 ], "bp_params": [ -0.090, -0.855, -1.958, 2.389, 0.725, -6.537 ], "frame": { "rmsd": null, "origin": [ 289.029, 164.917, 109.875 ], "x_axis": [ -0.849, -0.430, 0.308 ], "y_axis": [ 0.054, -0.649, -0.759 ], "z_axis": [ 0.526, -0.627, 0.574 ], "quaternion": [ -0.138, 0.238, -0.395, 0.876 ] } }, { "index": 739, "nt1": "///2/1753", "nt2": "///2/1780", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -142.294, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.810, "chi2": -116.482, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.321, "C1C1_dist": 10.342, "N1N9_dist": 8.843, "C6C8_dist": 9.895, "CNNC_torsion": -7.900, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.64],N3-N1(imino)[2.95],N4(amino)-O6(carbonyl)[3.11]", "interBase_angle": 15.000, "planarity": 0.218, "simple_Shear": 0.260, "simple_Stretch": -0.105, "simple_Buckle": -14.426, "simple_Propeller": 4.109, "bp_simpleParams": [ 0.260, -0.105, 1.097, -14.426, 4.109, 6.876 ], "bp_params": [ 0.258, -0.110, 1.097, -14.350, 4.368, 6.828 ], "frame": { "rmsd": null, "origin": [ 288.336, 166.112, 109.173 ], "x_axis": [ -0.833, -0.368, 0.413 ], "y_axis": [ 0.032, -0.778, -0.628 ], "z_axis": [ 0.552, -0.509, 0.660 ], "quaternion": [ -0.111, 0.267, -0.314, 0.904 ] } }, { "index": 740, "nt1": "///2/1754", "nt2": "///2/1778", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -148.976, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.244, "chi2": -139.354, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.385, "C1C1_dist": 10.662, "N1N9_dist": 8.780, "C6C8_dist": 9.573, "CNNC_torsion": -20.547, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.81],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 7.803, "planarity": 0.341, "simple_Shear": -0.137, "simple_Stretch": -0.495, "simple_Buckle": -5.740, "simple_Propeller": -5.285, "bp_simpleParams": [ -0.137, -0.495, 1.253, -5.740, -5.285, -5.151 ], "bp_params": [ -0.133, -0.496, 1.253, -5.699, -5.330, -5.151 ], "frame": { "rmsd": null, "origin": [ 291.684, 159.993, 110.799 ], "x_axis": [ -0.930, -0.235, -0.281 ], "y_axis": [ 0.322, -0.158, -0.933 ], "z_axis": [ 0.175, -0.959, 0.223 ], "quaternion": [ -0.183, -0.035, -0.622, 0.760 ] } }, { "index": 741, "nt1": "///2/1755", "nt2": "///2/1777", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -147.909, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.182, "chi2": -155.399, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.538, "C1C1_dist": 10.762, "N1N9_dist": 8.916, "C6C8_dist": 9.786, "CNNC_torsion": 5.286, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 4.819, "planarity": 0.177, "simple_Shear": 0.167, "simple_Stretch": -0.233, "simple_Buckle": -4.695, "simple_Propeller": 1.088, "bp_simpleParams": [ 0.167, -0.233, -0.589, -4.695, 1.088, -1.715 ], "bp_params": [ 0.164, -0.235, -0.589, -4.682, 1.141, -1.713 ], "frame": { "rmsd": null, "origin": [ 292.680, 155.165, 112.173 ], "x_axis": [ -0.686, -0.255, -0.682 ], "y_axis": [ 0.711, -0.034, -0.702 ], "z_axis": [ 0.156, -0.966, 0.205 ], "quaternion": [ -0.348, -0.190, -0.601, 0.694 ] } }, { "index": 742, "nt1": "///2/1756", "nt2": "///2/1776", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -150.151, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.484, "chi2": -147.961, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.085, "C1C1_dist": 10.665, "N1N9_dist": 8.920, "C6C8_dist": 9.847, "CNNC_torsion": -5.461, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 0.935, "planarity": 0.120, "simple_Shear": 0.214, "simple_Stretch": -0.191, "simple_Buckle": -0.317, "simple_Propeller": 0.879, "bp_simpleParams": [ 0.214, -0.191, 0.531, -0.317, 0.879, 0.122 ], "bp_params": [ 0.211, -0.194, 0.531, -0.303, 0.884, 0.122 ], "frame": { "rmsd": null, "origin": [ 290.949, 150.522, 110.417 ], "x_axis": [ -0.514, -0.199, -0.834 ], "y_axis": [ 0.842, 0.067, -0.535 ], "z_axis": [ 0.163, -0.978, 0.133 ], "quaternion": [ -0.414, -0.267, -0.602, 0.629 ] } }, { "index": 743, "nt1": "///2/1758", "nt2": "///2/1775", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -103.002, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.884, "chi2": -154.267, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 98.253, "C1C1_dist": 9.694, "N1N9_dist": 8.820, "C6C8_dist": 10.063, "CNNC_torsion": 5.811, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O2(carbonyl)[3.19]", "interBase_angle": 29.183, "planarity": 0.329, "simple_Shear": -4.380, "simple_Stretch": 1.623, "simple_Buckle": 29.143, "simple_Propeller": 1.532, "bp_simpleParams": [ -4.380, 1.623, 1.137, 29.143, 1.532, 31.301 ], "bp_params": [ -4.645, -0.500, 1.137, 25.417, 14.340, 30.810 ], "frame": { "rmsd": null, "origin": [ 288.827, 148.477, 107.550 ], "x_axis": [ 0.165, 0.956, -0.244 ], "y_axis": [ 0.888, -0.251, -0.386 ], "z_axis": [ -0.430, -0.153, -0.890 ], "quaternion": [ -0.077, 0.759, 0.607, -0.222 ] } }, { "index": 744, "nt1": "///2/1760", "nt2": "///2/1772", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.023, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.549, "chi2": -165.938, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.399, "C1C1_dist": 10.514, "N1N9_dist": 8.819, "C6C8_dist": 9.776, "CNNC_torsion": -6.549, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 4.437, "planarity": 0.214, "simple_Shear": -0.173, "simple_Stretch": -0.297, "simple_Buckle": 3.355, "simple_Propeller": 2.903, "bp_simpleParams": [ -0.173, -0.297, 1.021, 3.355, 2.903, 1.734 ], "bp_params": [ -0.169, -0.299, 1.021, 3.319, 2.944, 1.734 ], "frame": { "rmsd": null, "origin": [ 288.401, 146.203, 96.197 ], "x_axis": [ 0.980, -0.067, 0.187 ], "y_axis": [ -0.125, -0.940, 0.316 ], "z_axis": [ 0.154, -0.333, -0.930 ], "quaternion": [ 0.166, 0.981, -0.049, 0.087 ] } }, { "index": 745, "nt1": "///2/1761", "nt2": "///2/1771", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -151.891, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 110.506, "chi2": -173.293, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 36.239, "C1C1_dist": 9.301, "N1N9_dist": 8.696, "C6C8_dist": 9.962, "CNNC_torsion": 58.303, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*O6(carbonyl)[2.90]", "interBase_angle": 50.874, "planarity": 0.653, "simple_Shear": 5.595, "simple_Stretch": 2.963, "simple_Buckle": -43.050, "simple_Propeller": 27.108, "bp_simpleParams": [ 5.595, 2.963, -0.947, -43.050, 27.108, 47.373 ], "bp_params": [ 6.264, -0.923, -0.947, -19.326, 47.060, 50.577 ], "frame": { "rmsd": null, "origin": [ 292.851, 143.888, 92.887 ], "x_axis": [ 0.490, -0.619, 0.613 ], "y_axis": [ -0.796, -0.604, 0.027 ], "z_axis": [ 0.354, -0.501, -0.790 ], "quaternion": [ 0.155, 0.849, -0.417, 0.285 ] } }, { "index": 746, "nt1": "///2/1781", "nt2": "///2/1785", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW-M", "intra_chain": true, "chi1": -85.633, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 28.791, "chi2": -162.061, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 36.893, "C1C1_dist": 12.537, "N1N9_dist": 10.075, "C6C8_dist": 8.467, "CNNC_torsion": -44.479, "hbonds_num": 1, "hbonds_desc": "N6(amino)*N4(amino)[2.97]", "interBase_angle": 59.333, "planarity": 0.760, "simple_Shear": 1.133, "simple_Stretch": 4.710, "simple_Buckle": 57.373, "simple_Propeller": 15.123, "bp_simpleParams": [ 1.133, 4.710, 0.114, 57.373, 15.123, -132.385 ], "bp_params": [ 2.293, 4.268, 0.114, 59.322, -1.142, -126.165 ], "frame": { "rmsd": null, "origin": [ 277.453, 169.195, 113.172 ], "x_axis": [ 0.067, 0.872, -0.485 ], "y_axis": [ 0.945, 0.101, 0.312 ], "z_axis": [ 0.321, -0.479, -0.817 ], "quaternion": [ 0.296, 0.667, 0.680, -0.061 ] } }, { "index": 747, "nt1": "///2/1828", "nt2": "///2/1849", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -157.631, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 93.208, "chi2": -171.841, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.220, "C1C1_dist": 9.946, "N1N9_dist": 9.086, "C6C8_dist": 10.738, "CNNC_torsion": 117.239, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.09]", "interBase_angle": 50.863, "planarity": 0.640, "simple_Shear": 3.591, "simple_Stretch": 3.312, "simple_Buckle": -9.447, "simple_Propeller": -49.978, "bp_simpleParams": [ 3.591, 3.312, 0.342, -9.447, -49.978, -117.158 ], "bp_params": [ 1.192, -4.738, 0.342, -39.743, 31.742, -115.891 ], "frame": { "rmsd": null, "origin": [ 206.375, 231.220, 194.309 ], "x_axis": [ -0.190, -0.080, 0.978 ], "y_axis": [ -0.115, 0.992, 0.059 ], "z_axis": [ -0.975, -0.101, -0.198 ], "quaternion": [ 0.633, 0.063, -0.771, 0.014 ] } }, { "index": 748, "nt1": "///2/1829", "nt2": "///2/1851", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -174.974, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 78.192, "chi2": -168.602, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.318, "C1C1_dist": 8.582, "N1N9_dist": 8.026, "C6C8_dist": 10.064, "CNNC_torsion": 176.724, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N3[2.76]", "interBase_angle": 49.211, "planarity": 0.650, "simple_Shear": 6.660, "simple_Stretch": 3.659, "simple_Buckle": -48.854, "simple_Propeller": -5.919, "bp_simpleParams": [ 6.660, 3.659, -2.123, -48.854, -5.919, -158.377 ], "bp_params": [ -2.033, -7.322, -2.123, 30.169, 38.879, -158.788 ], "frame": { "rmsd": null, "origin": [ 201.049, 229.497, 193.872 ], "x_axis": [ -0.108, 0.697, 0.709 ], "y_axis": [ -0.197, 0.684, -0.703 ], "z_axis": [ -0.974, -0.215, 0.063 ], "quaternion": [ 0.640, -0.190, -0.657, 0.349 ] } }, { "index": 749, "nt1": "///2/1830", "nt2": "///2/1831", "bp": "U+A", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -127.865, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 133.683, "chi2": 174.759, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 37.774, "C1C1_dist": 6.718, "N1N9_dist": 6.583, "C6C8_dist": 6.560, "CNNC_torsion": 27.061, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.94]", "interBase_angle": 22.923, "planarity": 0.337, "simple_Shear": 0.139, "simple_Stretch": 6.210, "simple_Buckle": -6.154, "simple_Propeller": 22.081, "bp_simpleParams": [ 0.139, 6.210, -0.585, -6.154, 22.081, -3.077 ], "bp_params": [ 6.202, 0.344, -0.585, 21.560, 7.787, -3.030 ], "frame": { "rmsd": null, "origin": [ 199.194, 223.455, 196.627 ], "x_axis": [ 0.375, 0.287, 0.881 ], "y_axis": [ -0.192, 0.954, -0.229 ], "z_axis": [ -0.907, -0.084, 0.413 ], "quaternion": [ 0.828, -0.044, -0.540, 0.145 ] } }, { "index": 750, "nt1": "///2/1834", "nt2": "///2/1837", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 129.949, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 75.277, "chi2": -96.918, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 71.612, "C1C1_dist": 10.449, "N1N9_dist": 9.633, "C6C8_dist": 11.256, "CNNC_torsion": 29.567, "hbonds_num": 1, "hbonds_desc": "N1-N1(imino)[3.19]", "interBase_angle": 42.959, "planarity": 0.687, "simple_Shear": 0.328, "simple_Stretch": 2.364, "simple_Buckle": 20.292, "simple_Propeller": 37.864, "bp_simpleParams": [ 0.328, 2.364, 0.949, 20.292, 37.864, 51.824 ], "bp_params": [ 0.503, 2.333, 0.949, 22.640, 36.509, 53.337 ], "frame": { "rmsd": null, "origin": [ 187.228, 225.258, 200.900 ], "x_axis": [ 0.682, -0.201, 0.703 ], "y_axis": [ -0.558, -0.764, 0.323 ], "z_axis": [ 0.472, -0.613, -0.633 ], "quaternion": [ 0.267, 0.877, -0.216, 0.335 ] } }, { "index": 751, "nt1": "///2/1839", "nt2": "///2/1860", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.946, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 35.532, "chi2": -122.043, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 49.511, "C1C1_dist": 11.547, "N1N9_dist": 9.397, "C6C8_dist": 9.742, "CNNC_torsion": 16.181, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[2.70]", "interBase_angle": 18.897, "planarity": 0.452, "simple_Shear": -1.158, "simple_Stretch": 0.150, "simple_Buckle": -18.373, "simple_Propeller": 4.418, "bp_simpleParams": [ -1.158, 0.150, -1.336, -18.373, 4.418, -26.297 ], "bp_params": [ -1.168, 0.006, -1.336, -18.783, 2.076, -25.960 ], "frame": { "rmsd": null, "origin": [ 181.640, 222.751, 182.691 ], "x_axis": [ -0.369, 0.607, -0.704 ], "y_axis": [ 0.361, 0.791, 0.493 ], "z_axis": [ 0.857, -0.072, -0.511 ], "quaternion": [ 0.477, 0.296, 0.817, 0.129 ] } }, { "index": 752, "nt1": "///2/1840", "nt2": "///2/1859", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.246, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.769, "chi2": -153.097, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.845, "C1C1_dist": 10.607, "N1N9_dist": 8.822, "C6C8_dist": 9.729, "CNNC_torsion": 10.506, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.86],O4(carbonyl)-N6(amino)[2.94]", "interBase_angle": 5.942, "planarity": 0.232, "simple_Shear": -0.106, "simple_Stretch": -0.254, "simple_Buckle": -3.175, "simple_Propeller": 5.022, "bp_simpleParams": [ -0.106, -0.254, -0.923, -3.175, 5.022, -1.878 ], "bp_params": [ -0.102, -0.256, -0.923, -3.253, 4.972, -1.879 ], "frame": { "rmsd": null, "origin": [ 184.144, 223.230, 179.999 ], "x_axis": [ -0.178, 0.947, -0.266 ], "y_axis": [ 0.446, 0.319, 0.836 ], "z_axis": [ 0.877, 0.030, -0.479 ], "quaternion": [ 0.407, 0.496, 0.703, 0.308 ] } }, { "index": 753, "nt1": "///2/1840", "nt2": "///2/1860", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.246, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.658, "chi2": -122.043, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 60.611, "C1C1_dist": 9.693, "N1N9_dist": 8.389, "C6C8_dist": 9.607, "CNNC_torsion": -8.860, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.24],O4(carbonyl)-N6(amino)[3.72]", "interBase_angle": 18.546, "planarity": 0.466, "simple_Shear": 0.536, "simple_Stretch": -0.425, "simple_Buckle": -15.503, "simple_Propeller": 10.178, "bp_simpleParams": [ 0.536, -0.425, 2.385, -15.503, 10.178, 19.941 ], "bp_params": [ 0.517, -0.447, 2.385, -15.085, 10.789, 19.859 ], "frame": { "rmsd": null, "origin": [ 182.844, 223.091, 181.032 ], "x_axis": [ -0.210, 0.869, -0.448 ], "y_axis": [ 0.487, 0.491, 0.723 ], "z_axis": [ 0.848, -0.066, -0.526 ], "quaternion": [ 0.434, 0.454, 0.746, 0.220 ] } }, { "index": 754, "nt1": "///2/1841", "nt2": "///2/1858", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.097, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.174, "chi2": 175.110, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.817, "C1C1_dist": 10.706, "N1N9_dist": 8.968, "C6C8_dist": 9.919, "CNNC_torsion": 2.670, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 4.812, "planarity": 0.059, "simple_Shear": 0.229, "simple_Stretch": -0.108, "simple_Buckle": -0.477, "simple_Propeller": 4.788, "bp_simpleParams": [ 0.229, -0.108, -0.051, -0.477, 4.788, 1.190 ], "bp_params": [ 0.227, -0.112, -0.051, -0.392, 4.796, 1.191 ], "frame": { "rmsd": null, "origin": [ 185.959, 224.537, 176.644 ], "x_axis": [ 0.033, 0.946, 0.323 ], "y_axis": [ 0.471, -0.300, 0.830 ], "z_axis": [ 0.882, 0.124, -0.455 ], "quaternion": [ 0.264, 0.669, 0.530, 0.450 ] } }, { "index": 755, "nt1": "///2/1842", "nt2": "///2/1857", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.366, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.330, "chi2": -167.865, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.804, "C1C1_dist": 10.643, "N1N9_dist": 8.950, "C6C8_dist": 9.912, "CNNC_torsion": -1.445, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 4.263, "planarity": 0.132, "simple_Shear": 0.206, "simple_Stretch": -0.122, "simple_Buckle": 3.058, "simple_Propeller": 2.970, "bp_simpleParams": [ 0.206, -0.122, 0.392, 3.058, 2.970, 1.672 ], "bp_params": [ 0.204, -0.125, 0.392, 3.105, 2.921, 1.672 ], "frame": { "rmsd": null, "origin": [ 187.751, 226.213, 173.651 ], "x_axis": [ 0.200, 0.680, 0.705 ], "y_axis": [ 0.412, -0.711, 0.570 ], "z_axis": [ 0.889, 0.176, -0.422 ], "quaternion": [ 0.129, 0.764, 0.357, 0.522 ] } }, { "index": 756, "nt1": "///2/1843", "nt2": "///2/1856", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.973, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.484, "chi2": -155.327, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.825, "C1C1_dist": 10.707, "N1N9_dist": 8.956, "C6C8_dist": 9.878, "CNNC_torsion": 2.525, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 6.333, "planarity": 0.091, "simple_Shear": -0.185, "simple_Stretch": -0.143, "simple_Buckle": -6.191, "simple_Propeller": -1.335, "bp_simpleParams": [ -0.185, -0.143, -0.477, -6.191, -1.335, 0.013 ], "bp_params": [ -0.183, -0.146, -0.477, -6.173, -1.415, 0.013 ], "frame": { "rmsd": null, "origin": [ 190.017, 228.380, 172.263 ], "x_axis": [ -0.026, -0.005, 1.000 ], "y_axis": [ 0.459, -0.888, 0.007 ], "z_axis": [ 0.888, 0.459, 0.025 ], "quaternion": [ -0.167, 0.678, 0.167, 0.696 ] } }, { "index": 757, "nt1": "///2/1844", "nt2": "///2/1855", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.909, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.559, "chi2": -162.729, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.179, "C1C1_dist": 10.779, "N1N9_dist": 8.929, "C6C8_dist": 9.700, "CNNC_torsion": -2.644, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.10],O2(carbonyl)-N2(amino)[3.28],N3(imino)-O6(carbonyl)[2.93]", "interBase_angle": 1.119, "planarity": 0.030, "simple_Shear": 1.317, "simple_Stretch": -0.203, "simple_Buckle": 1.102, "simple_Propeller": -0.198, "bp_simpleParams": [ 1.317, -0.203, 0.078, 1.102, -0.198, -7.596 ], "bp_params": [ 1.280, -0.369, 0.078, 1.067, -0.337, -7.595 ], "frame": { "rmsd": null, "origin": [ 192.652, 230.926, 172.554 ], "x_axis": [ 0.168, -0.539, 0.825 ], "y_axis": [ 0.379, -0.738, -0.559 ], "z_axis": [ 0.910, 0.406, 0.081 ], "quaternion": [ -0.357, 0.675, -0.059, 0.642 ] } }, { "index": 758, "nt1": "///2/1845", "nt2": "///2/1854", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.141, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.692, "chi2": -160.978, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.676, "C1C1_dist": 10.841, "N1N9_dist": 9.008, "C6C8_dist": 9.873, "CNNC_torsion": 7.934, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.91]", "interBase_angle": 9.188, "planarity": 0.125, "simple_Shear": 0.075, "simple_Stretch": -0.064, "simple_Buckle": -5.904, "simple_Propeller": 7.040, "bp_simpleParams": [ 0.075, -0.064, -0.406, -5.904, 7.040, -3.080 ], "bp_params": [ 0.075, -0.065, -0.406, -5.824, 7.106, -3.082 ], "frame": { "rmsd": null, "origin": [ 195.035, 232.692, 174.972 ], "x_axis": [ -0.012, -0.929, 0.369 ], "y_axis": [ 0.385, -0.345, -0.856 ], "z_axis": [ 0.923, 0.132, 0.362 ], "quaternion": [ 0.501, -0.493, 0.276, -0.655 ] } }, { "index": 759, "nt1": "///2/1846", "nt2": "///2/1853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.497, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.940, "chi2": -156.942, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.750, "C1C1_dist": 10.795, "N1N9_dist": 8.974, "C6C8_dist": 9.857, "CNNC_torsion": 15.715, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 15.577, "planarity": 0.220, "simple_Shear": -0.192, "simple_Stretch": -0.169, "simple_Buckle": 5.232, "simple_Propeller": 14.673, "bp_simpleParams": [ -0.192, -0.169, -0.453, 5.232, 14.673, -2.296 ], "bp_params": [ -0.190, -0.171, -0.453, 5.037, 14.741, -2.313 ], "frame": { "rmsd": null, "origin": [ 197.354, 234.006, 177.268 ], "x_axis": [ 0.047, -0.983, -0.179 ], "y_axis": [ 0.336, 0.184, -0.924 ], "z_axis": [ 0.941, -0.017, 0.339 ], "quaternion": [ 0.627, -0.362, 0.447, -0.526 ] } }, { "index": 760, "nt1": "///z/125", "nt2": "///z/323", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.605, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.414, "chi2": -131.636, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 54.201, "C1C1_dist": 10.656, "N1N9_dist": 8.915, "C6C8_dist": 9.848, "CNNC_torsion": 4.184, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 7.238, "planarity": 0.180, "simple_Shear": 0.165, "simple_Stretch": -0.168, "simple_Buckle": -7.234, "simple_Propeller": 0.233, "bp_simpleParams": [ 0.165, -0.168, -0.451, -7.234, 0.233, 0.318 ], "bp_params": [ 0.163, -0.170, -0.451, -7.231, 0.317, 0.317 ], "frame": { "rmsd": null, "origin": [ 115.728, 247.905, 191.952 ], "x_axis": [ -0.863, 0.476, -0.170 ], "y_axis": [ 0.315, 0.242, -0.918 ], "z_axis": [ -0.395, -0.846, -0.359 ], "quaternion": [ -0.072, 0.252, 0.785, -0.562 ] } }, { "index": 761, "nt1": "///z/126", "nt2": "///z/322", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.889, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.434, "chi2": -174.303, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.862, "C1C1_dist": 10.603, "N1N9_dist": 8.893, "C6C8_dist": 9.843, "CNNC_torsion": -7.833, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 1.223, "planarity": 0.167, "simple_Shear": 0.157, "simple_Stretch": -0.211, "simple_Buckle": 0.786, "simple_Propeller": -0.937, "bp_simpleParams": [ 0.157, -0.211, 0.717, 0.786, -0.937, 0.815 ], "bp_params": [ 0.155, -0.213, 0.717, 0.775, -0.946, 0.815 ], "frame": { "rmsd": null, "origin": [ 113.550, 245.024, 191.863 ], "x_axis": [ -0.539, 0.619, -0.571 ], "y_axis": [ 0.763, 0.071, -0.642 ], "z_axis": [ -0.357, -0.782, -0.511 ], "quaternion": [ 0.073, 0.475, 0.728, -0.489 ] } }, { "index": 762, "nt1": "///z/127", "nt2": "///z/321", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.236, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.342, "chi2": -170.390, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.502, "C1C1_dist": 10.500, "N1N9_dist": 8.844, "C6C8_dist": 9.835, "CNNC_torsion": -3.430, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 2.194, "planarity": 0.122, "simple_Shear": -0.056, "simple_Stretch": -0.128, "simple_Buckle": 1.872, "simple_Propeller": 1.145, "bp_simpleParams": [ -0.056, -0.128, 0.512, 1.872, 1.145, 2.003 ], "bp_params": [ -0.055, -0.129, 0.512, 1.860, 1.165, 2.003 ], "frame": { "rmsd": null, "origin": [ 110.790, 242.673, 191.117 ], "x_axis": [ -0.077, 0.580, -0.811 ], "y_axis": [ 0.918, -0.275, -0.285 ], "z_axis": [ -0.388, -0.767, -0.512 ], "quaternion": [ 0.184, 0.654, 0.573, -0.458 ] } }, { "index": 763, "nt1": "///z/128", "nt2": "///z/320", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.811, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.804, "chi2": -169.798, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.452, "C1C1_dist": 10.571, "N1N9_dist": 8.902, "C6C8_dist": 9.880, "CNNC_torsion": -1.474, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 4.017, "planarity": 0.108, "simple_Shear": 0.187, "simple_Stretch": -0.145, "simple_Buckle": 3.893, "simple_Propeller": 0.993, "bp_simpleParams": [ 0.187, -0.145, 0.281, 3.893, 0.993, 1.884 ], "bp_params": [ 0.185, -0.147, 0.281, 3.907, 0.936, 1.883 ], "frame": { "rmsd": null, "origin": [ 107.944, 240.745, 189.506 ], "x_axis": [ 0.396, 0.367, -0.842 ], "y_axis": [ 0.829, -0.538, 0.155 ], "z_axis": [ -0.396, -0.759, -0.517 ], "quaternion": [ 0.292, 0.783, 0.382, -0.395 ] } }, { "index": 764, "nt1": "///z/129", "nt2": "///z/319", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.737, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.585, "chi2": 179.627, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.775, "C1C1_dist": 10.721, "N1N9_dist": 8.910, "C6C8_dist": 9.845, "CNNC_torsion": 6.934, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 15.040, "planarity": 0.231, "simple_Shear": 0.233, "simple_Stretch": -0.179, "simple_Buckle": 1.591, "simple_Propeller": 14.956, "bp_simpleParams": [ 0.233, -0.179, 0.403, 1.591, 14.956, 2.017 ], "bp_params": [ 0.229, -0.183, 0.403, 1.860, 14.924, 2.034 ], "frame": { "rmsd": null, "origin": [ 105.392, 239.239, 187.126 ], "x_axis": [ 0.870, 0.152, -0.470 ], "y_axis": [ 0.440, -0.669, 0.599 ], "z_axis": [ -0.223, -0.728, -0.648 ], "quaternion": [ 0.372, 0.893, 0.166, -0.194 ] } }, { "index": 765, "nt1": "///z/130", "nt2": "///z/318", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.878, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.984, "chi2": -169.680, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.438, "C1C1_dist": 10.745, "N1N9_dist": 8.974, "C6C8_dist": 9.908, "CNNC_torsion": -4.705, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 3.445, "planarity": 0.069, "simple_Shear": 0.143, "simple_Stretch": -0.119, "simple_Buckle": 2.177, "simple_Propeller": -2.670, "bp_simpleParams": [ 0.143, -0.119, 0.191, 2.177, -2.670, 0.296 ], "bp_params": [ 0.142, -0.120, 0.191, 2.151, -2.691, 0.296 ], "frame": { "rmsd": null, "origin": [ 104.715, 239.313, 182.902 ], "x_axis": [ 0.993, 0.047, 0.104 ], "y_axis": [ -0.031, -0.767, 0.640 ], "z_axis": [ 0.110, -0.640, -0.761 ], "quaternion": [ 0.341, 0.938, 0.004, 0.057 ] } }, { "index": 766, "nt1": "///z/131", "nt2": "///z/317", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.688, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.781, "chi2": -160.548, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.185, "C1C1_dist": 10.597, "N1N9_dist": 8.903, "C6C8_dist": 9.839, "CNNC_torsion": 10.420, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 7.799, "planarity": 0.166, "simple_Shear": -0.158, "simple_Stretch": -0.212, "simple_Buckle": -7.083, "simple_Propeller": 3.263, "bp_simpleParams": [ -0.158, -0.212, -0.865, -7.083, 3.263, -0.165 ], "bp_params": [ -0.156, -0.214, -0.865, -7.124, 3.174, -0.165 ], "frame": { "rmsd": null, "origin": [ 105.284, 238.804, 178.864 ], "x_axis": [ 0.807, -0.276, 0.522 ], "y_axis": [ -0.531, -0.726, 0.437 ], "z_axis": [ 0.258, -0.629, -0.733 ], "quaternion": [ 0.295, 0.904, -0.223, 0.216 ] } }, { "index": 767, "nt1": "///z/132", "nt2": "///z/316", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.294, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.498, "chi2": -161.727, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.047, "C1C1_dist": 10.570, "N1N9_dist": 8.885, "C6C8_dist": 9.847, "CNNC_torsion": 5.202, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 2.863, "planarity": 0.177, "simple_Shear": -0.191, "simple_Stretch": -0.215, "simple_Buckle": -1.610, "simple_Propeller": -2.368, "bp_simpleParams": [ -0.191, -0.215, -0.816, -1.610, -2.368, 1.617 ], "bp_params": [ -0.188, -0.217, -0.816, -1.576, -2.391, 1.617 ], "frame": { "rmsd": null, "origin": [ 107.323, 237.598, 176.304 ], "x_axis": [ 0.398, -0.480, 0.782 ], "y_axis": [ -0.861, -0.489, 0.138 ], "z_axis": [ 0.316, -0.728, -0.608 ], "quaternion": [ 0.274, 0.790, -0.424, 0.348 ] } }, { "index": 768, "nt1": "///z/133", "nt2": "///z/315", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.021, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.624, "chi2": -164.749, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.701, "C1C1_dist": 10.846, "N1N9_dist": 8.956, "C6C8_dist": 9.784, "CNNC_torsion": 15.900, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 12.556, "planarity": 0.218, "simple_Shear": -0.098, "simple_Stretch": -0.252, "simple_Buckle": -7.888, "simple_Propeller": 9.769, "bp_simpleParams": [ -0.098, -0.252, -0.940, -7.888, 9.769, -4.516 ], "bp_params": [ -0.096, -0.253, -0.940, -7.962, 9.709, -4.522 ], "frame": { "rmsd": null, "origin": [ 109.897, 236.021, 173.465 ], "x_axis": [ -0.197, -0.526, 0.827 ], "y_axis": [ -0.952, -0.099, -0.289 ], "z_axis": [ 0.234, -0.845, -0.482 ], "quaternion": [ -0.236, -0.588, 0.628, -0.451 ] } }, { "index": 769, "nt1": "///z/134", "nt2": "///z/290", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.787, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.624, "chi2": -82.397, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 55.843, "C1C1_dist": 10.291, "N1N9_dist": 8.593, "C6C8_dist": 9.472, "CNNC_torsion": 9.841, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.87],N1-N3(imino)[2.88]", "interBase_angle": 15.281, "planarity": 0.367, "simple_Shear": 0.210, "simple_Stretch": -0.594, "simple_Buckle": -12.653, "simple_Propeller": -8.568, "bp_simpleParams": [ 0.210, -0.594, -1.891, -12.653, -8.568, 0.618 ], "bp_params": [ 0.191, -0.601, -1.891, -12.917, -8.165, 0.616 ], "frame": { "rmsd": null, "origin": [ 111.479, 232.800, 172.219 ], "x_axis": [ -0.735, -0.168, 0.657 ], "y_axis": [ -0.672, 0.043, -0.740 ], "z_axis": [ 0.096, -0.985, -0.145 ], "quaternion": [ -0.202, -0.303, 0.693, -0.622 ] } }, { "index": 770, "nt1": "///z/135", "nt2": "///z/289", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -144.195, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.226, "chi2": -139.289, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.906, "C1C1_dist": 10.621, "N1N9_dist": 8.772, "C6C8_dist": 9.595, "CNNC_torsion": 15.071, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.84],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 9.364, "planarity": 0.316, "simple_Shear": -0.069, "simple_Stretch": -0.521, "simple_Buckle": -9.336, "simple_Propeller": -0.730, "bp_simpleParams": [ -0.069, -0.521, -1.623, -9.336, -0.730, -3.219 ], "bp_params": [ -0.069, -0.522, -1.623, -9.335, -0.743, -3.208 ], "frame": { "rmsd": null, "origin": [ 111.809, 228.462, 171.030 ], "x_axis": [ -0.983, -0.087, 0.159 ], "y_axis": [ -0.172, 0.171, -0.970 ], "z_axis": [ 0.057, -0.981, -0.183 ], "quaternion": [ -0.033, -0.085, 0.764, -0.638 ] } }, { "index": 771, "nt1": "///z/137", "nt2": "///z/287", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.239, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 34.985, "chi2": -154.579, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 71.363, "C1C1_dist": 9.991, "N1N9_dist": 8.333, "C6C8_dist": 9.023, "CNNC_torsion": 20.751, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.81],N1(imino)-O2(carbonyl)[2.94]", "interBase_angle": 19.941, "planarity": 0.394, "simple_Shear": -3.350, "simple_Stretch": -0.518, "simple_Buckle": -19.722, "simple_Propeller": 2.946, "bp_simpleParams": [ -3.350, -0.518, -2.242, -19.722, 2.946, -6.357 ], "bp_params": [ -2.985, -1.605, -2.242, -19.571, -3.823, -6.268 ], "frame": { "rmsd": null, "origin": [ 108.834, 221.147, 170.240 ], "x_axis": [ -0.780, 0.574, -0.249 ], "y_axis": [ 0.463, 0.262, -0.847 ], "z_axis": [ -0.420, -0.776, -0.470 ], "quaternion": [ -0.054, 0.327, 0.793, -0.512 ] } }, { "index": 772, "nt1": "///z/138", "nt2": "///z/286", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.313, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.524, "chi2": -165.046, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.023, "C1C1_dist": 10.714, "N1N9_dist": 8.830, "C6C8_dist": 9.642, "CNNC_torsion": 18.659, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 16.431, "planarity": 0.365, "simple_Shear": 0.168, "simple_Stretch": -0.366, "simple_Buckle": -12.880, "simple_Propeller": 10.202, "bp_simpleParams": [ 0.168, -0.366, -1.014, -12.880, 10.202, -5.434 ], "bp_params": [ 0.165, -0.367, -1.014, -12.815, 10.284, -5.422 ], "frame": { "rmsd": null, "origin": [ 106.748, 218.340, 169.150 ], "x_axis": [ -0.229, 0.672, -0.704 ], "y_axis": [ 0.915, -0.099, -0.392 ], "z_axis": [ -0.333, -0.734, -0.592 ], "quaternion": [ 0.142, 0.604, 0.656, -0.429 ] } }, { "index": 773, "nt1": "///z/138", "nt2": "///z/287", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.313, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.591, "chi2": -154.579, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.956, "C1C1_dist": 7.680, "N1N9_dist": 6.804, "C6C8_dist": 8.412, "CNNC_torsion": -7.225, "hbonds_num": 1, "hbonds_desc": "N3-N3(imino)[3.86]", "interBase_angle": 27.070, "planarity": 0.443, "simple_Shear": -1.876, "simple_Stretch": -0.991, "simple_Buckle": -24.170, "simple_Propeller": 12.190, "bp_simpleParams": [ -1.876, -0.991, 1.841, -24.170, 12.190, 37.148 ], "bp_params": [ -1.629, -1.359, 1.841, -26.207, 6.781, 36.306 ], "frame": { "rmsd": null, "origin": [ 107.150, 220.065, 169.062 ], "x_axis": [ -0.546, 0.651, -0.527 ], "y_axis": [ 0.739, 0.079, -0.669 ], "z_axis": [ -0.394, -0.755, -0.524 ], "quaternion": [ 0.045, 0.474, 0.733, -0.486 ] } }, { "index": 774, "nt1": "///z/139", "nt2": "///z/285", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.428, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.184, "chi2": 174.358, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.034, "C1C1_dist": 10.770, "N1N9_dist": 8.957, "C6C8_dist": 9.874, "CNNC_torsion": 13.944, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 19.154, "planarity": 0.227, "simple_Shear": 0.249, "simple_Stretch": -0.130, "simple_Buckle": -6.508, "simple_Propeller": 18.015, "bp_simpleParams": [ 0.249, -0.130, -0.055, -6.508, 18.015, 0.363 ], "bp_params": [ 0.247, -0.134, -0.055, -6.188, 18.127, 0.367 ], "frame": { "rmsd": null, "origin": [ 104.349, 217.372, 166.376 ], "x_axis": [ 0.390, 0.610, -0.689 ], "y_axis": [ 0.893, -0.432, 0.123 ], "z_axis": [ -0.223, -0.664, -0.714 ], "quaternion": [ 0.247, 0.796, 0.472, -0.286 ] } }, { "index": 775, "nt1": "///z/140", "nt2": "///z/284", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.867, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.958, "chi2": -154.836, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.677, "C1C1_dist": 10.683, "N1N9_dist": 8.917, "C6C8_dist": 9.845, "CNNC_torsion": 2.546, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.87]", "interBase_angle": 10.009, "planarity": 0.117, "simple_Shear": 0.031, "simple_Stretch": -0.064, "simple_Buckle": -9.685, "simple_Propeller": 2.528, "bp_simpleParams": [ 0.031, -0.064, -0.192, -9.685, 2.528, -0.054 ], "bp_params": [ 0.030, -0.065, -0.192, -9.666, 2.599, -0.054 ], "frame": { "rmsd": null, "origin": [ 102.818, 216.603, 163.457 ], "x_axis": [ 0.878, 0.454, -0.150 ], "y_axis": [ 0.476, -0.802, 0.360 ], "z_axis": [ 0.043, -0.388, -0.921 ], "quaternion": [ 0.197, 0.949, 0.245, -0.028 ] } }, { "index": 776, "nt1": "///z/141", "nt2": "///z/252", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -150.034, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.010, "chi2": -140.788, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 53.344, "C1C1_dist": 10.707, "N1N9_dist": 8.920, "C6C8_dist": 9.817, "CNNC_torsion": -3.646, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[2.91]", "interBase_angle": 9.236, "planarity": 0.158, "simple_Shear": -0.092, "simple_Stretch": -0.115, "simple_Buckle": -6.329, "simple_Propeller": -6.727, "bp_simpleParams": [ -0.092, -0.115, -0.357, -6.329, -6.727, -1.299 ], "bp_params": [ -0.090, -0.117, -0.357, -6.244, -6.806, -1.300 ], "frame": { "rmsd": null, "origin": [ 103.738, 216.992, 159.982 ], "x_axis": [ 0.898, -0.194, 0.394 ], "y_axis": [ -0.305, -0.921, 0.241 ], "z_axis": [ 0.316, -0.337, -0.887 ], "quaternion": [ 0.150, 0.963, -0.130, 0.184 ] } }, { "index": 777, "nt1": "///z/142", "nt2": "///z/251", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 170.105, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.714, "chi2": -162.118, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.384, "C1C1_dist": 10.770, "N1N9_dist": 8.951, "C6C8_dist": 9.848, "CNNC_torsion": -4.395, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.87]", "interBase_angle": 2.295, "planarity": 0.047, "simple_Shear": 0.027, "simple_Stretch": -0.093, "simple_Buckle": 1.701, "simple_Propeller": -1.541, "bp_simpleParams": [ 0.027, -0.093, 0.217, 1.701, -1.541, -1.188 ], "bp_params": [ 0.026, -0.093, 0.217, 1.689, -1.554, -1.188 ], "frame": { "rmsd": null, "origin": [ 104.211, 217.345, 155.875 ], "x_axis": [ 0.707, -0.415, 0.573 ], "y_axis": [ -0.652, -0.697, 0.299 ], "z_axis": [ 0.275, -0.585, -0.763 ], "quaternion": [ 0.248, 0.890, -0.300, 0.239 ] } }, { "index": 778, "nt1": "///z/143", "nt2": "///z/250", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.630, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.099, "chi2": -172.490, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.967, "C1C1_dist": 10.626, "N1N9_dist": 8.911, "C6C8_dist": 9.875, "CNNC_torsion": 1.372, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 2.267, "planarity": 0.103, "simple_Shear": -0.196, "simple_Stretch": -0.160, "simple_Buckle": -0.591, "simple_Propeller": -2.188, "bp_simpleParams": [ -0.196, -0.160, -0.452, -0.591, -2.188, 1.656 ], "bp_params": [ -0.194, -0.163, -0.452, -0.558, -2.197, 1.656 ], "frame": { "rmsd": null, "origin": [ 106.747, 216.663, 152.878 ], "x_axis": [ 0.173, -0.738, 0.653 ], "y_axis": [ -0.936, -0.329, -0.125 ], "z_axis": [ 0.307, -0.589, -0.747 ], "quaternion": [ 0.155, 0.750, -0.558, 0.320 ] } }, { "index": 779, "nt1": "///z/144", "nt2": "///z/249", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.530, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.599, "chi2": -174.217, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.086, "C1C1_dist": 10.545, "N1N9_dist": 8.888, "C6C8_dist": 9.741, "CNNC_torsion": -2.749, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.85],N3(imino)-O6(carbonyl)[2.91]", "interBase_angle": 2.116, "planarity": 0.026, "simple_Shear": 3.395, "simple_Stretch": 0.327, "simple_Buckle": 1.621, "simple_Propeller": -1.360, "bp_simpleParams": [ 3.395, 0.327, -0.006, 1.621, -1.360, -1.004 ], "bp_params": [ 3.309, -0.829, -0.006, 1.072, -1.824, -1.004 ], "frame": { "rmsd": null, "origin": [ 109.130, 213.274, 151.804 ], "x_axis": [ -0.328, -0.793, 0.513 ], "y_axis": [ -0.892, 0.081, -0.445 ], "z_axis": [ 0.312, -0.603, -0.734 ], "quaternion": [ -0.069, -0.576, 0.732, -0.358 ] } }, { "index": 780, "nt1": "///z/145", "nt2": "///z/248", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -141.607, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.950, "chi2": -155.428, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.591, "C1C1_dist": 9.654, "N1N9_dist": 7.957, "C6C8_dist": 8.851, "CNNC_torsion": 15.459, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[2.38]", "interBase_angle": 9.144, "planarity": 0.375, "simple_Shear": -0.557, "simple_Stretch": -1.282, "simple_Buckle": -9.030, "simple_Propeller": -1.434, "bp_simpleParams": [ -0.557, -1.282, -1.727, -9.030, -1.434, -1.119 ], "bp_params": [ -0.492, -1.309, -1.727, -8.947, -1.885, -1.116 ], "frame": { "rmsd": null, "origin": [ 111.528, 210.094, 150.674 ], "x_axis": [ -0.775, -0.404, 0.486 ], "y_axis": [ -0.563, 0.091, -0.821 ], "z_axis": [ 0.288, -0.910, -0.298 ], "quaternion": [ -0.067, -0.329, 0.736, -0.588 ] } }, { "index": 781, "nt1": "///z/146", "nt2": "///z/247", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.721, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.216, "chi2": -153.690, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.565, "C1C1_dist": 10.674, "N1N9_dist": 8.874, "C6C8_dist": 9.732, "CNNC_torsion": 14.831, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 10.742, "planarity": 0.240, "simple_Shear": -0.082, "simple_Stretch": -0.332, "simple_Buckle": -9.762, "simple_Propeller": 4.482, "bp_simpleParams": [ -0.082, -0.332, -1.240, -9.762, 4.482, -3.120 ], "bp_params": [ -0.080, -0.333, -1.240, -9.789, 4.423, -3.111 ], "frame": { "rmsd": null, "origin": [ 113.073, 206.037, 150.107 ], "x_axis": [ -0.951, -0.299, 0.074 ], "y_axis": [ -0.167, 0.300, -0.939 ], "z_axis": [ 0.259, -0.906, -0.335 ], "quaternion": [ 0.057, -0.145, 0.804, -0.574 ] } }, { "index": 782, "nt1": "///z/147", "nt2": "///z/246", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.822, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.850, "chi2": -158.117, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.537, "C1C1_dist": 10.586, "N1N9_dist": 8.764, "C6C8_dist": 9.579, "CNNC_torsion": 23.722, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.85],O4(carbonyl)-N6(amino)[2.93]", "interBase_angle": 13.395, "planarity": 0.367, "simple_Shear": -0.239, "simple_Stretch": -0.445, "simple_Buckle": -3.106, "simple_Propeller": 13.030, "bp_simpleParams": [ -0.239, -0.445, -1.336, -3.106, 13.030, -7.295 ], "bp_params": [ -0.226, -0.452, -1.336, -3.476, 12.937, -7.338 ], "frame": { "rmsd": null, "origin": [ 114.721, 202.311, 150.258 ], "x_axis": [ -0.929, -0.046, -0.367 ], "y_axis": [ 0.307, 0.458, -0.834 ], "z_axis": [ 0.207, -0.888, -0.411 ], "quaternion": [ 0.172, 0.078, 0.836, -0.515 ] } }, { "index": 783, "nt1": "///z/148", "nt2": "///z/245", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.868, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.976, "chi2": -177.518, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.343, "C1C1_dist": 10.634, "N1N9_dist": 8.881, "C6C8_dist": 9.816, "CNNC_torsion": 5.076, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 3.347, "planarity": 0.200, "simple_Shear": 0.199, "simple_Stretch": -0.233, "simple_Buckle": -2.728, "simple_Propeller": -1.939, "bp_simpleParams": [ 0.199, -0.233, -0.755, -2.728, -1.939, 0.793 ], "bp_params": [ 0.195, -0.236, -0.755, -2.757, -1.897, 0.793 ], "frame": { "rmsd": null, "origin": [ 113.110, 198.958, 148.894 ], "x_axis": [ -0.588, 0.477, -0.654 ], "y_axis": [ 0.805, 0.267, -0.529 ], "z_axis": [ -0.078, -0.837, -0.541 ], "quaternion": [ 0.186, 0.414, 0.774, -0.441 ] } }, { "index": 784, "nt1": "///z/149", "nt2": "///z/244", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.312, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.138, "chi2": -147.591, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.652, "C1C1_dist": 10.503, "N1N9_dist": 8.845, "C6C8_dist": 9.842, "CNNC_torsion": -1.414, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.82],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 0.349, "planarity": 0.016, "simple_Shear": -0.016, "simple_Stretch": -0.104, "simple_Buckle": 0.247, "simple_Propeller": -0.246, "bp_simpleParams": [ -0.016, -0.104, 0.060, 0.247, -0.246, 2.310 ], "bp_params": [ -0.015, -0.104, 0.060, 0.249, -0.245, 2.310 ], "frame": { "rmsd": null, "origin": [ 111.780, 195.918, 147.251 ], "x_axis": [ -0.167, 0.600, -0.782 ], "y_axis": [ 0.983, 0.039, -0.180 ], "z_axis": [ -0.078, -0.799, -0.596 ], "quaternion": [ 0.262, 0.589, 0.671, -0.365 ] } }, { "index": 785, "nt1": "///z/150", "nt2": "///z/242", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.053, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.783, "chi2": -174.800, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.069, "C1C1_dist": 10.668, "N1N9_dist": 8.846, "C6C8_dist": 9.739, "CNNC_torsion": 9.726, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 4.449, "planarity": 0.242, "simple_Shear": -0.135, "simple_Stretch": -0.348, "simple_Buckle": -4.235, "simple_Propeller": -1.362, "bp_simpleParams": [ -0.135, -0.348, -1.189, -4.235, -1.362, -0.716 ], "bp_params": [ -0.132, -0.349, -1.189, -4.224, -1.397, -0.716 ], "frame": { "rmsd": null, "origin": [ 110.908, 191.717, 142.217 ], "x_axis": [ 0.354, 0.902, -0.248 ], "y_axis": [ 0.833, -0.184, 0.523 ], "z_axis": [ 0.426, -0.392, -0.816 ], "quaternion": [ 0.298, 0.767, 0.565, 0.058 ] } }, { "index": 786, "nt1": "///z/151", "nt2": "///z/241", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.916, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.232, "chi2": -156.183, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.013, "C1C1_dist": 10.592, "N1N9_dist": 8.860, "C6C8_dist": 9.782, "CNNC_torsion": 9.323, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 1.298, "planarity": 0.237, "simple_Shear": 0.147, "simple_Stretch": -0.296, "simple_Buckle": -1.268, "simple_Propeller": 0.280, "bp_simpleParams": [ 0.147, -0.296, -1.004, -1.268, 0.280, -0.139 ], "bp_params": [ 0.144, -0.298, -1.004, -1.265, 0.293, -0.139 ], "frame": { "rmsd": null, "origin": [ 111.342, 190.739, 138.292 ], "x_axis": [ 0.728, 0.682, 0.066 ], "y_axis": [ 0.527, -0.618, 0.583 ], "z_axis": [ 0.439, -0.390, -0.810 ], "quaternion": [ 0.274, 0.888, 0.340, 0.142 ] } }, { "index": 787, "nt1": "///z/152", "nt2": "///z/240", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.195, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.462, "chi2": -162.947, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.379, "C1C1_dist": 10.563, "N1N9_dist": 8.906, "C6C8_dist": 9.894, "CNNC_torsion": 0.362, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 5.819, "planarity": 0.127, "simple_Shear": -0.204, "simple_Stretch": -0.144, "simple_Buckle": 0.436, "simple_Propeller": 5.802, "bp_simpleParams": [ -0.204, -0.144, 0.434, 0.436, 5.802, 2.685 ], "bp_params": [ -0.202, -0.147, 0.434, 0.345, 5.808, 2.689 ], "frame": { "rmsd": null, "origin": [ 113.035, 190.764, 135.083 ], "x_axis": [ 0.764, 0.418, 0.491 ], "y_axis": [ 0.087, -0.821, 0.564 ], "z_axis": [ 0.639, -0.388, -0.664 ], "quaternion": [ 0.264, 0.901, 0.140, 0.313 ] } }, { "index": 788, "nt1": "///z/153", "nt2": "///z/239", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -132.690, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 52.992, "chi2": -172.062, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.174, "C1C1_dist": 10.663, "N1N9_dist": 8.894, "C6C8_dist": 9.811, "CNNC_torsion": -6.279, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 8.115, "planarity": 0.190, "simple_Shear": -0.156, "simple_Stretch": -0.243, "simple_Buckle": 6.958, "simple_Propeller": 4.176, "bp_simpleParams": [ -0.156, -0.243, 0.971, 6.958, 4.176, 0.611 ], "bp_params": [ -0.154, -0.245, 0.971, 6.919, 4.240, 0.610 ], "frame": { "rmsd": null, "origin": [ 115.555, 191.157, 131.870 ], "x_axis": [ 0.665, -0.037, 0.746 ], "y_axis": [ -0.288, -0.934, 0.210 ], "z_axis": [ 0.689, -0.355, -0.632 ], "quaternion": [ 0.157, 0.899, -0.090, 0.399 ] } }, { "index": 789, "nt1": "///z/155", "nt2": "///z/172", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -177.218, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 38.171, "chi2": -168.377, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 116.983, "C1C1_dist": 10.438, "N1N9_dist": 9.956, "C6C8_dist": 11.295, "CNNC_torsion": -4.371, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.84]", "interBase_angle": 5.509, "planarity": 0.187, "simple_Shear": -5.415, "simple_Stretch": 4.018, "simple_Buckle": 5.040, "simple_Propeller": -2.222, "bp_simpleParams": [ -5.415, 4.018, 1.106, 5.040, -2.222, 46.100 ], "bp_params": [ -6.743, -0.039, 1.106, 5.365, 1.251, 46.057 ], "frame": { "rmsd": null, "origin": [ 119.462, 176.518, 118.068 ], "x_axis": [ -0.299, 0.368, -0.880 ], "y_axis": [ -0.833, 0.349, 0.429 ], "z_axis": [ 0.465, 0.862, 0.203 ], "quaternion": [ 0.560, -0.193, 0.601, 0.537 ] } }, { "index": 790, "nt1": "///z/155", "nt2": "///z/228", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -177.218, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.884, "chi2": -154.785, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.606, "C1C1_dist": 8.098, "N1N9_dist": 6.515, "C6C8_dist": 6.199, "CNNC_torsion": -25.071, "hbonds_num": 3, "hbonds_desc": "OP2-O2'(hydroxyl)[2.82],N7-N3(imino)[2.93],N6(amino)-O4(carbonyl)[2.97]", "interBase_angle": 15.316, "planarity": 0.346, "simple_Shear": -2.703, "simple_Stretch": 1.116, "simple_Buckle": 15.242, "simple_Propeller": -1.505, "bp_simpleParams": [ -2.703, 1.116, -1.136, 15.242, -1.505, 68.882 ], "bp_params": [ 0.391, -2.898, -1.136, -6.352, 13.937, 69.197 ], "frame": { "rmsd": null, "origin": [ 119.879, 176.839, 121.858 ], "x_axis": [ -0.071, 0.373, -0.925 ], "y_axis": [ -0.826, 0.498, 0.264 ], "z_axis": [ 0.559, 0.783, 0.273 ], "quaternion": [ 0.652, -0.199, 0.569, 0.460 ] } }, { "index": 791, "nt1": "///z/156", "nt2": "///z/171", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.705, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 56.947, "chi2": 168.969, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.772, "C1C1_dist": 10.544, "N1N9_dist": 8.849, "C6C8_dist": 9.815, "CNNC_torsion": -4.312, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 5.209, "planarity": 0.218, "simple_Shear": 0.218, "simple_Stretch": -0.232, "simple_Buckle": 4.477, "simple_Propeller": 2.662, "bp_simpleParams": [ 0.218, -0.232, 0.731, 4.477, 2.662, 2.144 ], "bp_params": [ 0.214, -0.236, 0.731, 4.522, 2.585, 2.142 ], "frame": { "rmsd": null, "origin": [ 122.818, 178.432, 118.351 ], "x_axis": [ -0.879, 0.434, -0.198 ], "y_axis": [ -0.225, -0.010, 0.974 ], "z_axis": [ 0.421, 0.901, 0.107 ], "quaternion": [ 0.233, 0.079, 0.664, 0.706 ] } }, { "index": 792, "nt1": "///z/156", "nt2": "///z/228", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -163.705, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 42.403, "chi2": -154.785, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.216, "C1C1_dist": 10.372, "N1N9_dist": 8.141, "C6C8_dist": 7.063, "CNNC_torsion": 15.371, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[2.36]", "interBase_angle": 24.132, "planarity": 0.371, "simple_Shear": -5.387, "simple_Stretch": 1.535, "simple_Buckle": 20.001, "simple_Propeller": -13.501, "bp_simpleParams": [ -5.387, 1.535, 1.795, 20.001, -13.501, 98.971 ], "bp_params": [ 2.731, -4.890, 1.795, -4.692, 23.671, 100.138 ], "frame": { "rmsd": null, "origin": [ 120.959, 178.371, 120.415 ], "x_axis": [ -0.329, 0.432, -0.840 ], "y_axis": [ -0.788, 0.365, 0.496 ], "z_axis": [ 0.521, 0.825, 0.221 ], "quaternion": [ 0.561, -0.147, 0.607, 0.544 ] } }, { "index": 793, "nt1": "///z/157", "nt2": "///z/170", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.659, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.236, "chi2": -177.329, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.631, "C1C1_dist": 10.642, "N1N9_dist": 8.903, "C6C8_dist": 9.817, "CNNC_torsion": -11.263, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 5.440, "planarity": 0.160, "simple_Shear": 0.142, "simple_Stretch": -0.226, "simple_Buckle": -0.163, "simple_Propeller": -5.438, "bp_simpleParams": [ 0.142, -0.226, 0.673, -0.163, -5.438, -0.689 ], "bp_params": [ 0.140, -0.227, 0.673, -0.215, -5.436, -0.690 ], "frame": { "rmsd": null, "origin": [ 124.632, 181.378, 116.555 ], "x_axis": [ -0.819, 0.374, 0.434 ], "y_axis": [ 0.354, -0.266, 0.897 ], "z_axis": [ 0.451, 0.888, 0.086 ], "quaternion": [ 0.007, 0.301, 0.606, 0.737 ] } }, { "index": 794, "nt1": "///z/158", "nt2": "///z/169", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.532, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.559, "chi2": -172.983, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.090, "C1C1_dist": 10.793, "N1N9_dist": 8.965, "C6C8_dist": 9.872, "CNNC_torsion": -5.671, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 5.052, "planarity": 0.067, "simple_Shear": -0.170, "simple_Stretch": -0.148, "simple_Buckle": 0.859, "simple_Propeller": -4.979, "bp_simpleParams": [ -0.170, -0.148, 0.108, 0.859, -4.979, -0.582 ], "bp_params": [ -0.168, -0.150, 0.108, 0.920, -4.968, -0.583 ], "frame": { "rmsd": null, "origin": [ 124.843, 184.658, 115.581 ], "x_axis": [ -0.536, 0.198, 0.821 ], "y_axis": [ 0.740, -0.357, 0.570 ], "z_axis": [ 0.405, 0.913, 0.045 ], "quaternion": [ -0.195, 0.440, 0.532, 0.696 ] } }, { "index": 795, "nt1": "///z/159", "nt2": "///z/168", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.419, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.593, "chi2": -174.746, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.651, "C1C1_dist": 10.707, "N1N9_dist": 8.931, "C6C8_dist": 9.867, "CNNC_torsion": 1.458, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 4.450, "planarity": 0.140, "simple_Shear": -0.164, "simple_Stretch": -0.177, "simple_Buckle": -2.357, "simple_Propeller": -3.774, "bp_simpleParams": [ -0.164, -0.177, -0.640, -2.357, -3.774, 0.859 ], "bp_params": [ -0.162, -0.179, -0.640, -2.314, -3.801, 0.859 ], "frame": { "rmsd": null, "origin": [ 124.487, 188.758, 113.635 ], "x_axis": [ -0.165, -0.028, 0.986 ], "y_axis": [ 0.901, -0.411, 0.139 ], "z_axis": [ 0.401, 0.911, 0.093 ], "quaternion": [ -0.360, 0.537, 0.407, 0.646 ] } }, { "index": 796, "nt1": "///z/160", "nt2": "///z/167", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.740, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.904, "chi2": -165.119, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.659, "C1C1_dist": 10.628, "N1N9_dist": 8.881, "C6C8_dist": 9.829, "CNNC_torsion": 4.952, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 5.649, "planarity": 0.082, "simple_Shear": -0.023, "simple_Stretch": -0.113, "simple_Buckle": 4.791, "simple_Propeller": 2.992, "bp_simpleParams": [ -0.023, -0.113, -0.342, 4.791, 2.992, 0.407 ], "bp_params": [ -0.022, -0.113, -0.342, 4.771, 3.024, 0.407 ], "frame": { "rmsd": null, "origin": [ 124.029, 192.420, 114.442 ], "x_axis": [ 0.249, -0.340, 0.907 ], "y_axis": [ 0.865, -0.344, -0.366 ], "z_axis": [ 0.437, 0.875, 0.208 ], "quaternion": [ 0.528, -0.588, -0.223, -0.571 ] } }, { "index": 797, "nt1": "///z/161", "nt2": "///z/166", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.398, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.396, "chi2": -166.403, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.282, "C1C1_dist": 10.687, "N1N9_dist": 8.920, "C6C8_dist": 9.854, "CNNC_torsion": 1.097, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 7.856, "planarity": 0.165, "simple_Shear": -0.204, "simple_Stretch": -0.189, "simple_Buckle": -5.195, "simple_Propeller": -5.893, "bp_simpleParams": [ -0.204, -0.189, -0.776, -5.195, -5.893, 1.374 ], "bp_params": [ -0.202, -0.192, -0.776, -5.110, -5.967, 1.374 ], "frame": { "rmsd": null, "origin": [ 124.921, 195.520, 116.435 ], "x_axis": [ 0.373, -0.880, 0.293 ], "y_axis": [ 0.617, 0.000, -0.787 ], "z_axis": [ 0.692, 0.474, 0.544 ], "quaternion": [ 0.692, -0.455, 0.144, -0.541 ] } }, { "index": 798, "nt1": "///z/165", "nt2": "///z/230", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -161.566, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 123.424, "chi2": -178.853, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 101.850, "C1C1_dist": 6.073, "N1N9_dist": 7.206, "C6C8_dist": 9.303, "CNNC_torsion": -16.663, "hbonds_num": 3, "hbonds_desc": "O3'-O2'(hydroxyl)[3.07],O2'(hydroxyl)-O2'(hydroxyl)[2.51],N3-N2(amino)[3.16]", "interBase_angle": 68.972, "planarity": 0.755, "simple_Shear": 0.538, "simple_Stretch": 5.620, "simple_Buckle": 63.460, "simple_Propeller": 27.019, "bp_simpleParams": [ 0.538, 5.620, -3.504, 63.460, 27.019, 140.040 ], "bp_params": [ 1.707, 5.381, -3.504, 68.125, 10.776, 132.745 ], "frame": { "rmsd": null, "origin": [ 124.039, 195.708, 131.064 ], "x_axis": [ 0.352, -0.000, 0.936 ], "y_axis": [ -0.203, 0.976, 0.077 ], "z_axis": [ -0.914, -0.218, 0.343 ], "quaternion": [ 0.817, 0.090, -0.566, 0.062 ] } }, { "index": 799, "nt1": "///z/172", "nt2": "///z/227", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.377, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.208, "chi2": -166.272, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.423, "C1C1_dist": 10.592, "N1N9_dist": 8.868, "C6C8_dist": 9.827, "CNNC_torsion": 2.457, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.84]", "interBase_angle": 4.568, "planarity": 0.097, "simple_Shear": 0.051, "simple_Stretch": -0.127, "simple_Buckle": -4.214, "simple_Propeller": -1.763, "bp_simpleParams": [ 0.051, -0.127, -0.528, -4.214, -1.763, 1.028 ], "bp_params": [ 0.049, -0.127, -0.528, -4.233, -1.718, 1.027 ], "frame": { "rmsd": null, "origin": [ 118.114, 177.030, 114.952 ], "x_axis": [ 0.062, 0.244, -0.968 ], "y_axis": [ 0.885, -0.461, -0.060 ], "z_axis": [ -0.461, -0.853, -0.245 ], "quaternion": [ 0.298, 0.665, 0.425, -0.537 ] } }, { "index": 800, "nt1": "///z/173", "nt2": "///z/226", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.360, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.277, "chi2": -147.943, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.468, "C1C1_dist": 10.694, "N1N9_dist": 8.831, "C6C8_dist": 9.628, "CNNC_torsion": 14.418, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.86],N1-N3(imino)[2.90]", "interBase_angle": 4.469, "planarity": 0.291, "simple_Shear": 0.238, "simple_Stretch": -0.398, "simple_Buckle": -4.302, "simple_Propeller": 1.210, "bp_simpleParams": [ 0.238, -0.398, -1.430, -4.302, 1.210, -5.745 ], "bp_params": [ 0.227, -0.404, -1.430, -4.266, 1.330, -5.741 ], "frame": { "rmsd": null, "origin": [ 114.763, 174.200, 115.180 ], "x_axis": [ 0.501, 0.014, -0.865 ], "y_axis": [ 0.758, -0.489, 0.431 ], "z_axis": [ -0.417, -0.872, -0.256 ], "quaternion": [ 0.435, 0.749, 0.258, -0.428 ] } }, { "index": 801, "nt1": "///z/174", "nt2": "///z/225", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.239, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.823, "chi2": -145.199, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.708, "C1C1_dist": 10.581, "N1N9_dist": 8.816, "C6C8_dist": 9.717, "CNNC_torsion": 10.041, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.91]", "interBase_angle": 2.343, "planarity": 0.206, "simple_Shear": -0.125, "simple_Stretch": -0.270, "simple_Buckle": 1.139, "simple_Propeller": 2.047, "bp_simpleParams": [ -0.125, -0.270, -0.969, 1.139, 2.047, -1.670 ], "bp_params": [ -0.120, -0.272, -0.969, 1.103, 2.067, -1.670 ], "frame": { "rmsd": null, "origin": [ 112.841, 170.712, 113.864 ], "x_axis": [ 0.798, -0.169, -0.578 ], "y_axis": [ 0.473, -0.419, 0.775 ], "z_axis": [ -0.374, -0.892, -0.254 ], "quaternion": [ 0.530, 0.786, 0.097, -0.303 ] } }, { "index": 802, "nt1": "///z/229", "nt2": "///z/238", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -146.132, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.485, "chi2": -168.583, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.718, "C1C1_dist": 10.527, "N1N9_dist": 8.817, "C6C8_dist": 9.734, "CNNC_torsion": 11.852, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 10.838, "planarity": 0.259, "simple_Shear": -0.110, "simple_Stretch": -0.350, "simple_Buckle": -10.815, "simple_Propeller": -0.711, "bp_simpleParams": [ -0.110, -0.350, -1.385, -10.815, -0.711, 0.011 ], "bp_params": [ -0.108, -0.351, -1.385, -10.811, -0.777, 0.011 ], "frame": { "rmsd": null, "origin": [ 119.208, 192.695, 130.107 ], "x_axis": [ -0.016, -0.648, 0.761 ], "y_axis": [ -0.309, -0.721, -0.620 ], "z_axis": [ 0.951, -0.245, -0.189 ], "quaternion": [ -0.136, 0.688, -0.348, 0.622 ] } }, { "index": 803, "nt1": "///z/230", "nt2": "///z/237", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.853, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.577, "chi2": -157.557, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.306, "C1C1_dist": 10.819, "N1N9_dist": 8.975, "C6C8_dist": 9.853, "CNNC_torsion": 1.038, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 4.496, "planarity": 0.115, "simple_Shear": -0.166, "simple_Stretch": -0.174, "simple_Buckle": -2.600, "simple_Propeller": -3.668, "bp_simpleParams": [ -0.166, -0.174, -0.539, -2.600, -3.668, -0.883 ], "bp_params": [ -0.164, -0.176, -0.539, -2.560, -3.696, -0.884 ], "frame": { "rmsd": null, "origin": [ 122.876, 192.495, 130.568 ], "x_axis": [ -0.249, -0.840, 0.482 ], "y_axis": [ -0.361, -0.381, -0.851 ], "z_axis": [ 0.899, -0.385, -0.209 ], "quaternion": [ -0.201, 0.579, -0.519, 0.596 ] } }, { "index": 804, "nt1": "///z/231", "nt2": "///z/236", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -144.337, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.569, "chi2": -129.544, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 54.382, "C1C1_dist": 10.681, "N1N9_dist": 8.910, "C6C8_dist": 9.795, "CNNC_torsion": 12.779, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 7.813, "planarity": 0.207, "simple_Shear": -0.128, "simple_Stretch": -0.273, "simple_Buckle": -6.381, "simple_Propeller": 4.507, "bp_simpleParams": [ -0.128, -0.273, -1.053, -6.381, 4.507, -2.121 ], "bp_params": [ -0.126, -0.274, -1.053, -6.424, 4.447, -2.120 ], "frame": { "rmsd": null, "origin": [ 126.560, 191.276, 131.495 ], "x_axis": [ -0.501, -0.852, -0.154 ], "y_axis": [ -0.016, 0.187, -0.982 ], "z_axis": [ 0.865, -0.490, -0.108 ], "quaternion": [ 0.380, -0.324, 0.670, -0.549 ] } }, { "index": 805, "nt1": "///z/232", "nt2": "///z/235", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -123.942, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 60.094, "chi2": -114.701, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.832, "C1C1_dist": 10.320, "N1N9_dist": 8.824, "C6C8_dist": 9.880, "CNNC_torsion": 0.922, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.67],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 6.413, "planarity": 0.153, "simple_Shear": 0.233, "simple_Stretch": -0.151, "simple_Buckle": 2.494, "simple_Propeller": 5.908, "bp_simpleParams": [ 0.233, -0.151, 0.409, 2.494, 5.908, 4.891 ], "bp_params": [ 0.230, -0.155, 0.409, 2.609, 5.858, 4.896 ], "frame": { "rmsd": null, "origin": [ 129.761, 188.396, 130.356 ], "x_axis": [ -0.560, -0.705, -0.435 ], "y_axis": [ 0.107, 0.459, -0.882 ], "z_axis": [ 0.822, -0.540, -0.181 ], "quaternion": [ 0.424, -0.202, 0.742, -0.479 ] } }, { "index": 806, "nt1": "///z/253", "nt2": "///z/279", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.426, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.920, "chi2": -153.028, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.759, "C1C1_dist": 10.927, "N1N9_dist": 9.000, "C6C8_dist": 9.838, "CNNC_torsion": -1.249, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.84]", "interBase_angle": 4.906, "planarity": 0.092, "simple_Shear": -0.174, "simple_Stretch": -0.174, "simple_Buckle": 0.926, "simple_Propeller": 4.818, "bp_simpleParams": [ -0.174, -0.174, 0.322, 0.926, 4.818, -2.336 ], "bp_params": [ -0.172, -0.176, 0.322, 0.870, 4.828, -2.338 ], "frame": { "rmsd": null, "origin": [ 95.185, 228.547, 147.949 ], "x_axis": [ 0.151, 0.946, 0.287 ], "y_axis": [ 0.384, -0.324, 0.865 ], "z_axis": [ 0.911, -0.020, -0.412 ], "quaternion": [ 0.322, 0.687, 0.484, 0.436 ] } }, { "index": 807, "nt1": "///z/254", "nt2": "///z/278", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.154, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.752, "chi2": -177.842, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.397, "C1C1_dist": 10.707, "N1N9_dist": 8.950, "C6C8_dist": 9.882, "CNNC_torsion": -1.054, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 8.318, "planarity": 0.147, "simple_Shear": 0.168, "simple_Stretch": -0.121, "simple_Buckle": 7.793, "simple_Propeller": 2.909, "bp_simpleParams": [ 0.168, -0.121, 0.154, 7.793, 2.909, 0.606 ], "bp_params": [ 0.166, -0.123, 0.154, 7.831, 2.806, 0.605 ], "frame": { "rmsd": null, "origin": [ 97.689, 229.756, 146.060 ], "x_axis": [ 0.292, 0.531, 0.795 ], "y_axis": [ 0.245, -0.846, 0.474 ], "z_axis": [ 0.924, 0.056, -0.377 ], "quaternion": [ 0.132, 0.793, 0.245, 0.542 ] } }, { "index": 808, "nt1": "///z/255", "nt2": "///z/277", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.620, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.495, "chi2": -169.310, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.701, "C1C1_dist": 10.621, "N1N9_dist": 8.928, "C6C8_dist": 9.873, "CNNC_torsion": 3.502, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 12.446, "planarity": 0.141, "simple_Shear": 0.163, "simple_Stretch": -0.112, "simple_Buckle": 12.382, "simple_Propeller": -1.261, "bp_simpleParams": [ 0.163, -0.112, -0.521, 12.382, -1.261, 0.824 ], "bp_params": [ 0.162, -0.114, -0.521, 12.368, -1.395, 0.820 ], "frame": { "rmsd": null, "origin": [ 100.084, 231.674, 144.553 ], "x_axis": [ 0.348, 0.043, 0.936 ], "y_axis": [ 0.154, -0.988, -0.012 ], "z_axis": [ 0.925, 0.149, -0.351 ], "quaternion": [ -0.049, 0.820, 0.060, 0.568 ] } }, { "index": 809, "nt1": "///z/256", "nt2": "///z/276", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -167.872, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.528, "chi2": -179.990, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 3.874, "C1C1_dist": 10.959, "N1N9_dist": 9.113, "C6C8_dist": 9.065, "CNNC_torsion": -165.913, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.86],N3-N6(amino)[2.96]", "interBase_angle": 19.534, "planarity": 0.410, "simple_Shear": 6.205, "simple_Stretch": 2.011, "simple_Buckle": 19.120, "simple_Propeller": -3.999, "bp_simpleParams": [ 6.205, 2.011, -1.377, 19.120, -3.999, -34.180 ], "bp_params": [ 5.992, -2.579, -1.377, 11.770, -15.590, -34.312 ], "frame": { "rmsd": null, "origin": [ 103.433, 233.731, 142.173 ], "x_axis": [ 0.387, -0.730, 0.563 ], "y_axis": [ -0.108, -0.642, -0.759 ], "z_axis": [ 0.916, 0.233, -0.328 ], "quaternion": [ -0.323, 0.768, -0.273, 0.482 ] } }, { "index": 810, "nt1": "///z/259", "nt2": "///z/274", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 146.854, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 3.843, "chi2": -101.214, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 8.551, "C1C1_dist": 12.652, "N1N9_dist": 9.711, "C6C8_dist": 8.177, "CNNC_torsion": -159.601, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 6.388, "planarity": 0.217, "simple_Shear": 1.008, "simple_Stretch": 2.406, "simple_Buckle": -0.292, "simple_Propeller": -6.382, "bp_simpleParams": [ 1.008, 2.406, -1.383, -0.292, -6.382, -108.415 ], "bp_params": [ 1.445, 2.172, -1.383, -1.493, -6.211, -108.490 ], "frame": { "rmsd": null, "origin": [ 112.935, 235.891, 145.381 ], "x_axis": [ -0.641, -0.763, -0.083 ], "y_axis": [ 0.340, -0.185, -0.922 ], "z_axis": [ 0.688, -0.620, 0.378 ], "quaternion": [ -0.371, 0.203, -0.519, 0.742 ] } }, { "index": 811, "nt1": "///z/260", "nt2": "///z/273", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -156.860, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 7.660, "chi2": -163.786, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 77.038, "C1C1_dist": 10.881, "N1N9_dist": 9.182, "C6C8_dist": 9.316, "CNNC_torsion": -113.958, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.80],N6(amino)-N3[3.07]", "interBase_angle": 5.276, "planarity": 0.310, "simple_Shear": -6.490, "simple_Stretch": 2.136, "simple_Buckle": 4.984, "simple_Propeller": 1.732, "bp_simpleParams": [ -6.490, 2.136, 1.475, 4.984, 1.732, -25.130 ], "bp_params": [ -6.224, -2.819, 1.475, 2.498, 4.647, -25.144 ], "frame": { "rmsd": null, "origin": [ 115.845, 233.356, 145.313 ], "x_axis": [ 0.416, -0.882, 0.220 ], "y_axis": [ 0.093, -0.199, -0.975 ], "z_axis": [ 0.904, 0.427, -0.001 ], "quaternion": [ 0.551, -0.636, 0.310, -0.442 ] } }, { "index": 812, "nt1": "///z/261", "nt2": "///z/272", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.504, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.001, "chi2": -162.240, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.466, "C1C1_dist": 10.555, "N1N9_dist": 8.848, "C6C8_dist": 9.806, "CNNC_torsion": 5.717, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 2.581, "planarity": 0.213, "simple_Shear": -0.188, "simple_Stretch": -0.259, "simple_Buckle": 0.737, "simple_Propeller": -2.474, "bp_simpleParams": [ -0.188, -0.259, -0.888, 0.737, -2.474, 1.682 ], "bp_params": [ -0.184, -0.262, -0.888, 0.771, -2.463, 1.682 ], "frame": { "rmsd": null, "origin": [ 119.808, 231.850, 145.624 ], "x_axis": [ -0.116, -0.744, -0.658 ], "y_axis": [ -0.073, 0.667, -0.741 ], "z_axis": [ 0.991, -0.038, -0.132 ], "quaternion": [ 0.596, -0.295, 0.692, -0.282 ] } }, { "index": 813, "nt1": "///z/262", "nt2": "///z/271", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.513, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.850, "chi2": 169.688, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 26.872, "C1C1_dist": 10.721, "N1N9_dist": 8.732, "C6C8_dist": 9.225, "CNNC_torsion": 19.411, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.12],N3(imino)-O6(carbonyl)[2.69]", "interBase_angle": 1.725, "planarity": 0.240, "simple_Shear": 3.392, "simple_Stretch": -0.141, "simple_Buckle": 0.248, "simple_Propeller": -1.707, "bp_simpleParams": [ 3.392, -0.141, -1.189, 0.248, -1.707, -16.964 ], "bp_params": [ 3.143, -1.283, -1.189, -0.346, -1.690, -16.966 ], "frame": { "rmsd": null, "origin": [ 123.392, 230.596, 146.700 ], "x_axis": [ -0.141, 0.024, -0.990 ], "y_axis": [ 0.048, 0.999, 0.017 ], "z_axis": [ 0.989, -0.045, -0.142 ], "quaternion": [ 0.655, 0.024, 0.755, -0.009 ] } }, { "index": 814, "nt1": "///z/280", "nt2": "///z/283", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.800, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.297, "chi2": -69.558, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 54.116, "C1C1_dist": 10.694, "N1N9_dist": 8.928, "C6C8_dist": 9.864, "CNNC_torsion": -5.242, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 3.570, "planarity": 0.134, "simple_Shear": 0.159, "simple_Stretch": -0.166, "simple_Buckle": 3.507, "simple_Propeller": -0.670, "bp_simpleParams": [ 0.159, -0.166, 0.450, 3.507, -0.670, 0.391 ], "bp_params": [ 0.157, -0.168, 0.450, 3.499, -0.710, 0.391 ], "frame": { "rmsd": null, "origin": [ 93.338, 228.979, 151.123 ], "x_axis": [ 0.077, 0.991, -0.108 ], "y_axis": [ -0.450, -0.062, -0.891 ], "z_axis": [ -0.889, 0.117, 0.442 ], "quaternion": [ 0.603, -0.418, -0.324, 0.597 ] } }, { "index": 815, "nt1": "///z/288", "nt2": "///z/297", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.701, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.154, "chi2": -116.020, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 57.781, "C1C1_dist": 10.927, "N1N9_dist": 9.455, "C6C8_dist": 10.591, "CNNC_torsion": -1.685, "hbonds_num": 1, "hbonds_desc": "N1-N3(imino)[3.65]", "interBase_angle": 23.783, "planarity": 0.265, "simple_Shear": 0.476, "simple_Stretch": 0.892, "simple_Buckle": 23.446, "simple_Propeller": 3.989, "bp_simpleParams": [ 0.476, 0.892, 0.383, 23.446, 3.989, 9.796 ], "bp_params": [ 0.526, 0.863, 0.383, 23.643, 2.577, 9.591 ], "frame": { "rmsd": null, "origin": [ 112.700, 224.678, 170.834 ], "x_axis": [ -0.837, 0.158, -0.524 ], "y_axis": [ -0.538, -0.414, 0.735 ], "z_axis": [ -0.100, 0.897, 0.431 ], "quaternion": [ 0.213, -0.191, 0.498, 0.819 ] } }, { "index": 816, "nt1": "///z/291", "nt2": "///z/302", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 164.857, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 37.620, "chi2": -164.356, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 83.184, "C1C1_dist": 10.126, "N1N9_dist": 8.799, "C6C8_dist": 9.927, "CNNC_torsion": 0.247, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.28],N1(imino)-O2(carbonyl)[2.68]", "interBase_angle": 5.750, "planarity": 0.092, "simple_Shear": -3.663, "simple_Stretch": 0.697, "simple_Buckle": 4.931, "simple_Propeller": 2.956, "bp_simpleParams": [ -3.663, 0.697, 0.393, 4.931, 2.956, 14.801 ], "bp_params": [ -3.666, -0.678, 0.393, 3.526, 4.542, 14.805 ], "frame": { "rmsd": null, "origin": [ 130.078, 232.963, 175.210 ], "x_axis": [ 0.252, -0.957, -0.144 ], "y_axis": [ -0.851, -0.290, 0.437 ], "z_axis": [ -0.460, 0.012, -0.888 ], "quaternion": [ 0.136, 0.779, -0.580, -0.194 ] } }, { "index": 817, "nt1": "///z/292", "nt2": "///z/301", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.694, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.603, "chi2": -178.564, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.985, "C1C1_dist": 10.656, "N1N9_dist": 8.838, "C6C8_dist": 9.708, "CNNC_torsion": -9.573, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.65],N3-N1(imino)[2.72],N4(amino)-O6(carbonyl)[2.66]", "interBase_angle": 7.004, "planarity": 0.134, "simple_Shear": -0.793, "simple_Stretch": -0.285, "simple_Buckle": 2.398, "simple_Propeller": -6.580, "bp_simpleParams": [ -0.793, -0.285, 0.396, 2.398, -6.580, -2.706 ], "bp_params": [ -0.766, -0.351, 0.396, 2.941, -6.356, -2.709 ], "frame": { "rmsd": null, "origin": [ 129.822, 234.582, 171.666 ], "x_axis": [ -0.434, -0.825, 0.363 ], "y_axis": [ -0.715, 0.560, 0.419 ], "z_axis": [ -0.549, -0.077, -0.833 ], "quaternion": [ -0.271, -0.458, 0.841, 0.102 ] } }, { "index": 818, "nt1": "///z/293", "nt2": "///z/300", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.821, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.611, "chi2": -167.052, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.004, "C1C1_dist": 11.539, "N1N9_dist": 9.652, "C6C8_dist": 10.431, "CNNC_torsion": 3.462, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.63],N3-N1(imino)[3.51],N4(amino)-O6(carbonyl)[3.23]", "interBase_angle": 3.649, "planarity": 0.126, "simple_Shear": -0.245, "simple_Stretch": 0.406, "simple_Buckle": 2.125, "simple_Propeller": -2.967, "bp_simpleParams": [ -0.245, 0.406, -0.652, 2.125, -2.967, -6.460 ], "bp_params": [ -0.257, 0.398, -0.652, 2.209, -2.904, -6.461 ], "frame": { "rmsd": null, "origin": [ 129.731, 233.206, 167.633 ], "x_axis": [ -0.717, -0.421, 0.555 ], "y_axis": [ -0.400, 0.901, 0.168 ], "z_axis": [ -0.571, -0.101, -0.815 ], "quaternion": [ -0.304, -0.221, 0.926, 0.018 ] } }, { "index": 819, "nt1": "///z/294", "nt2": "///z/299", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.512, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.916, "chi2": -166.989, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.113, "C1C1_dist": 11.206, "N1N9_dist": 9.305, "C6C8_dist": 9.977, "CNNC_torsion": 7.441, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.53],N3(imino)-O6(carbonyl)[3.17]", "interBase_angle": 5.108, "planarity": 0.221, "simple_Shear": 1.897, "simple_Stretch": 0.142, "simple_Buckle": 0.587, "simple_Propeller": -5.074, "bp_simpleParams": [ 1.897, 0.142, -1.042, 0.587, -5.074, -10.856 ], "bp_params": [ 1.891, -0.214, -1.042, -0.371, -5.094, -10.866 ], "frame": { "rmsd": null, "origin": [ 128.051, 231.410, 164.624 ], "x_axis": [ -0.781, 0.250, 0.572 ], "y_axis": [ 0.118, 0.959, -0.257 ], "z_axis": [ -0.613, -0.133, -0.779 ], "quaternion": [ -0.316, 0.098, 0.938, -0.104 ] } }, { "index": 820, "nt1": "///z/295", "nt2": "///z/298", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -136.680, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 105.890, "chi2": 178.172, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.340, "C1C1_dist": 10.884, "N1N9_dist": 9.943, "C6C8_dist": 10.859, "CNNC_torsion": 156.116, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.13]", "interBase_angle": 22.078, "planarity": 0.283, "simple_Shear": 2.147, "simple_Stretch": 4.934, "simple_Buckle": 13.839, "simple_Propeller": -17.202, "bp_simpleParams": [ 2.147, 4.934, 0.413, 13.839, -17.202, -79.925 ], "bp_params": [ 3.933, -3.673, 0.413, -20.848, -7.266, -79.102 ], "frame": { "rmsd": null, "origin": [ 129.190, 228.330, 159.525 ], "x_axis": [ 0.304, 0.887, -0.348 ], "y_axis": [ -0.802, 0.436, 0.409 ], "z_axis": [ 0.514, 0.154, 0.844 ], "quaternion": [ 0.804, 0.079, 0.268, 0.525 ] } }, { "index": 821, "nt1": "///z/303", "nt2": "///z/314", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.913, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.173, "chi2": -155.627, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.251, "C1C1_dist": 10.645, "N1N9_dist": 8.938, "C6C8_dist": 9.876, "CNNC_torsion": 7.744, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 4.758, "planarity": 0.125, "simple_Shear": -0.167, "simple_Stretch": -0.169, "simple_Buckle": -4.191, "simple_Propeller": 2.251, "bp_simpleParams": [ -0.167, -0.169, -0.653, -4.191, 2.251, -0.019 ], "bp_params": [ -0.165, -0.171, -0.653, -4.220, 2.197, -0.019 ], "frame": { "rmsd": null, "origin": [ 126.489, 235.077, 180.344 ], "x_axis": [ 0.026, -0.986, 0.164 ], "y_axis": [ 0.976, -0.011, -0.217 ], "z_axis": [ 0.216, 0.166, 0.962 ], "quaternion": [ 0.703, -0.136, 0.019, -0.698 ] } }, { "index": 822, "nt1": "///z/304", "nt2": "///z/313", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.482, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.192, "chi2": -167.391, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.147, "C1C1_dist": 10.597, "N1N9_dist": 8.909, "C6C8_dist": 9.864, "CNNC_torsion": 6.855, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 1.411, "planarity": 0.165, "simple_Shear": 0.163, "simple_Stretch": -0.196, "simple_Buckle": 1.366, "simple_Propeller": -0.353, "bp_simpleParams": [ 0.163, -0.196, -0.774, 1.366, -0.353, 1.155 ], "bp_params": [ 0.161, -0.198, -0.774, 1.362, -0.369, 1.155 ], "frame": { "rmsd": null, "origin": [ 125.805, 234.892, 183.983 ], "x_axis": [ 0.491, -0.861, -0.132 ], "y_axis": [ 0.820, 0.508, -0.264 ], "z_axis": [ 0.294, 0.022, 0.956 ], "quaternion": [ 0.859, -0.083, 0.124, -0.489 ] } }, { "index": 823, "nt1": "///z/305", "nt2": "///z/312", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -116.494, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 67.420, "chi2": -168.472, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.571, "C1C1_dist": 9.926, "N1N9_dist": 8.059, "C6C8_dist": 8.718, "CNNC_torsion": 12.919, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O4(carbonyl)[2.59]", "interBase_angle": 31.582, "planarity": 0.357, "simple_Shear": 3.754, "simple_Stretch": -0.385, "simple_Buckle": 9.959, "simple_Propeller": 29.970, "bp_simpleParams": [ 3.754, -0.385, 0.031, 9.959, 29.970, -15.948 ], "bp_params": [ 3.289, -1.852, 0.031, 20.948, 23.634, -16.032 ], "frame": { "rmsd": null, "origin": [ 125.310, 234.160, 187.379 ], "x_axis": [ 0.780, -0.337, -0.527 ], "y_axis": [ 0.406, 0.914, 0.017 ], "z_axis": [ 0.476, -0.227, 0.850 ], "quaternion": [ 0.941, 0.065, 0.267, -0.197 ] } }, { "index": 824, "nt1": "///z/306", "nt2": "///z/308", "bp": "U+C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -142.392, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 98.327, "chi2": -170.194, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.949, "C1C1_dist": 8.938, "N1N9_dist": 7.891, "C6C8_dist": 8.006, "CNNC_torsion": -15.560, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-OP2[3.39],O2(carbonyl)-N4(amino)[2.86]", "interBase_angle": 37.248, "planarity": 0.460, "simple_Shear": -0.349, "simple_Stretch": 3.737, "simple_Buckle": 36.633, "simple_Propeller": 6.738, "bp_simpleParams": [ -0.349, 3.737, -2.038, 36.633, 6.738, -49.306 ], "bp_params": [ 3.702, 0.619, -2.038, 9.155, -36.105, -51.401 ], "frame": { "rmsd": null, "origin": [ 133.271, 233.225, 197.372 ], "x_axis": [ -0.960, 0.249, 0.129 ], "y_axis": [ 0.134, 0.812, -0.568 ], "z_axis": [ -0.246, -0.528, -0.813 ], "quaternion": [ -0.099, 0.101, 0.947, -0.289 ] } }, { "index": 825, "nt1": "///z/307", "nt2": "///z/328", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.255, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 21.682, "chi2": 174.177, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.569, "C1C1_dist": 13.235, "N1N9_dist": 10.707, "C6C8_dist": 10.343, "CNNC_torsion": 40.500, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N1(imino)[2.78]", "interBase_angle": 2.986, "planarity": 0.391, "simple_Shear": -1.847, "simple_Stretch": 1.416, "simple_Buckle": 2.976, "simple_Propeller": -0.240, "bp_simpleParams": [ -1.847, 1.416, -1.804, 2.976, -0.240, -50.249 ], "bp_params": [ -2.100, 1.005, -1.804, 2.962, 0.379, -50.235 ], "frame": { "rmsd": null, "origin": [ 137.082, 232.811, 197.330 ], "x_axis": [ -0.857, 0.376, 0.353 ], "y_axis": [ 0.201, 0.873, -0.444 ], "z_axis": [ -0.475, -0.309, -0.824 ], "quaternion": [ -0.220, 0.153, 0.943, -0.200 ] } }, { "index": 826, "nt1": "///z/307", "nt2": "///z/329", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.255, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 33.384, "chi2": -162.113, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 82.089, "C1C1_dist": 9.416, "N1N9_dist": 8.013, "C6C8_dist": 8.903, "CNNC_torsion": -19.167, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.87],N1(imino)-O2(carbonyl)[2.83]", "interBase_angle": 6.048, "planarity": 0.379, "simple_Shear": -4.393, "simple_Stretch": -0.259, "simple_Buckle": 5.201, "simple_Propeller": 3.087, "bp_simpleParams": [ -4.393, -0.259, 1.793, 5.201, 3.087, 6.059 ], "bp_params": [ -3.845, -2.141, 1.793, 3.345, 5.039, 6.062 ], "frame": { "rmsd": null, "origin": [ 137.017, 234.247, 198.954 ], "x_axis": [ -0.863, -0.090, 0.496 ], "y_axis": [ -0.224, 0.950, -0.218 ], "z_axis": [ -0.452, -0.299, -0.840 ], "quaternion": [ -0.248, -0.082, 0.956, -0.135 ] } }, { "index": 827, "nt1": "///z/308", "nt2": "///z/328", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.194, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.402, "chi2": 174.177, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.284, "C1C1_dist": 10.502, "N1N9_dist": 8.760, "C6C8_dist": 9.689, "CNNC_torsion": -12.488, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 6.201, "planarity": 0.327, "simple_Shear": 0.161, "simple_Stretch": -0.392, "simple_Buckle": 6.193, "simple_Propeller": -0.317, "bp_simpleParams": [ 0.161, -0.392, 1.174, 6.193, -0.317, 0.692 ], "bp_params": [ 0.157, -0.394, 1.174, 6.189, -0.385, 0.691 ], "frame": { "rmsd": null, "origin": [ 135.204, 232.232, 196.830 ], "x_axis": [ -0.685, 0.716, 0.132 ], "y_axis": [ 0.535, 0.618, -0.576 ], "z_axis": [ -0.494, -0.324, -0.807 ], "quaternion": [ -0.177, 0.355, 0.882, -0.255 ] } }, { "index": 828, "nt1": "///z/309", "nt2": "///z/327", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.420, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.874, "chi2": -156.350, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.405, "C1C1_dist": 10.643, "N1N9_dist": 8.894, "C6C8_dist": 9.839, "CNNC_torsion": 7.103, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 14.299, "planarity": 0.220, "simple_Shear": -0.207, "simple_Stretch": -0.145, "simple_Buckle": -9.514, "simple_Propeller": 10.675, "bp_simpleParams": [ -0.207, -0.145, 0.061, -9.514, 10.675, 1.363 ], "bp_params": [ -0.204, -0.149, 0.061, -9.716, 10.491, 1.364 ], "frame": { "rmsd": null, "origin": [ 132.240, 230.188, 195.047 ], "x_axis": [ -0.023, 0.996, 0.085 ], "y_axis": [ 0.751, 0.073, -0.657 ], "z_axis": [ -0.660, 0.048, -0.749 ], "quaternion": [ -0.274, 0.643, 0.679, -0.224 ] } }, { "index": 829, "nt1": "///z/310", "nt2": "///z/326", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.453, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.786, "chi2": -161.106, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.472, "C1C1_dist": 10.685, "N1N9_dist": 8.912, "C6C8_dist": 9.829, "CNNC_torsion": -6.850, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.85]", "interBase_angle": 13.895, "planarity": 0.156, "simple_Shear": 0.017, "simple_Stretch": -0.092, "simple_Buckle": -8.426, "simple_Propeller": -11.049, "bp_simpleParams": [ 0.017, -0.092, -0.255, -8.426, -11.049, -0.343 ], "bp_params": [ 0.016, -0.092, -0.255, -8.534, -10.965, -0.343 ], "frame": { "rmsd": null, "origin": [ 128.699, 230.377, 193.454 ], "x_axis": [ 0.615, 0.785, 0.074 ], "y_axis": [ 0.647, -0.449, -0.617 ], "z_axis": [ -0.451, 0.427, -0.784 ], "quaternion": [ -0.309, 0.844, 0.424, -0.112 ] } }, { "index": 830, "nt1": "///z/311", "nt2": "///z/325", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 167.116, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.178, "chi2": -152.548, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.588, "C1C1_dist": 10.634, "N1N9_dist": 8.870, "C6C8_dist": 9.774, "CNNC_torsion": 1.363, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 18.604, "planarity": 0.222, "simple_Shear": -0.222, "simple_Stretch": -0.195, "simple_Buckle": -16.619, "simple_Propeller": -8.362, "bp_simpleParams": [ -0.222, -0.195, -1.004, -16.619, -8.362, 1.402 ], "bp_params": [ -0.220, -0.198, -1.004, -16.541, -8.514, 1.391 ], "frame": { "rmsd": null, "origin": [ 125.128, 233.551, 191.596 ], "x_axis": [ 0.805, 0.567, -0.177 ], "y_axis": [ 0.405, -0.742, -0.535 ], "z_axis": [ -0.434, 0.358, -0.826 ], "quaternion": [ -0.243, 0.918, 0.264, -0.167 ] } } ], "num_multiplets": 88, "multiplets": [ { "index": 1, "num_nts": 3, "nts_short": "UUA", "nts_long": "///2/8,///2/15,///2/1196", "planarity": 0.141 }, { "index": 2, "num_nts": 3, "nts_short": "AAU", "nts_long": "///2/11,///2/1200,///2/1201", "planarity": 0.839 }, { "index": 3, "num_nts": 3, "nts_short": "AAA", "nts_long": "///2/11,///2/1200,///2/1357", "planarity": 0.475 }, { "index": 4, "num_nts": 3, "nts_short": "UAG", "nts_long": "///2/12,///2/1199,///2/1356", "planarity": 0.330 }, { "index": 5, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/13,///2/1143,///2/1198", "planarity": 0.585 }, { "index": 6, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/14,///2/668,///2/1197", "planarity": 0.274 }, { "index": 7, "num_nts": 3, "nts_short": "GUC", "nts_long": "///2/41,///2/44,///2/481", "planarity": 0.402 }, { "index": 8, "num_nts": 3, "nts_short": "AUA", "nts_long": "///2/46,///2/97,///2/433", "planarity": 0.425 }, { "index": 9, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/49,///2/50,///2/477", "planarity": 0.295 }, { "index": 10, "num_nts": 3, "nts_short": "CGA", "nts_long": "///2/96,///2/434,///2/473", "planarity": 0.426 }, { "index": 11, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/98,///2/99,///2/432", "planarity": 0.623 }, { "index": 12, "num_nts": 3, "nts_short": "GCA", "nts_long": "///2/108,///2/353,///2/854", "planarity": 0.726 }, { "index": 13, "num_nts": 3, "nts_short": "AGC", "nts_long": "///2/111,///2/114,///2/350", "planarity": 0.603 }, { "index": 14, "num_nts": 3, "nts_short": "GUA", "nts_long": "///2/113,///2/290,///2/292", "planarity": 1.319 }, { "index": 15, "num_nts": 3, "nts_short": "ACG", "nts_long": "///2/158,///2/463,///2/466", "planarity": 0.661 }, { "index": 16, "num_nts": 3, "nts_short": "CUG", "nts_long": "///2/196,///2/197,///2/203", "planarity": 0.761 }, { "index": 17, "num_nts": 3, "nts_short": "GUU", "nts_long": "///2/225,///2/287,///2/296", "planarity": 0.299 }, { "index": 18, "num_nts": 3, "nts_short": "ACA", "nts_long": "///2/360,///2/400,///2/401", "planarity": 0.822 }, { "index": 19, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/370,///2/373,///2/391", "planarity": 0.317 }, { "index": 20, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/374,///2/385,///2/390", "planarity": 0.442 }, { "index": 21, "num_nts": 3, "nts_short": "GCA", "nts_long": "///2/411,///2/429,///2/811", "planarity": 0.079 }, { "index": 22, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/412,///2/425,///2/812", "planarity": 0.290 }, { "index": 23, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/491,///2/493,///2/509", "planarity": 0.801 }, { "index": 24, "num_nts": 3, "nts_short": "CUA", "nts_long": "///2/492,///2/495,///2/508", "planarity": 0.377 }, { "index": 25, "num_nts": 3, "nts_short": "AGG", "nts_long": "///2/526,///2/559,///2/588", "planarity": 0.827 }, { "index": 26, "num_nts": 3, "nts_short": "CAU", "nts_long": "///2/532,///2/533,///2/551", "planarity": 0.461 }, { "index": 27, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/535,///2/547,///2/549", "planarity": 0.367 }, { "index": 28, "num_nts": 3, "nts_short": "GAC", "nts_long": "///2/598,///2/605,///2/638", "planarity": 0.321 }, { "index": 29, "num_nts": 3, "nts_short": "AGA", "nts_long": "///2/616,///2/625,///2/629", "planarity": 0.742 }, { "index": 30, "num_nts": 3, "nts_short": "UGA", "nts_long": "///2/666,///2/1142,///2/1145", "planarity": 0.561 }, { "index": 31, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/745,///2/794,///2/796", "planarity": 0.784 }, { "index": 32, "num_nts": 3, "nts_short": "CAA", "nts_long": "///2/803,///2/861,///2/862", "planarity": 0.436 }, { "index": 33, "num_nts": 3, "nts_short": "AAU", "nts_long": "///2/869,///2/872,///2/914", "planarity": 0.449 }, { "index": 34, "num_nts": 3, "nts_short": "UGG", "nts_long": "///2/885,///2/901,///2/902", "planarity": 1.058 }, { "index": 35, "num_nts": 3, "nts_short": "AGU", "nts_long": "///2/944,///2/982,///2/1045", "planarity": 0.742 }, { "index": 36, "num_nts": 3, "nts_short": "AGC", "nts_long": "///2/964,///2/1054,///2/1064", "planarity": 0.401 }, { "index": 37, "num_nts": 3, "nts_short": "UCG", "nts_long": "///2/965,///2/1053,///2/1065", "planarity": 0.289 }, { "index": 38, "num_nts": 3, "nts_short": "GCA", "nts_long": "///2/1037,///2/1078,///2/1181", "planarity": 0.506 }, { "index": 39, "num_nts": 3, "nts_short": "UAC", "nts_long": "///2/1038,///2/1077,///2/1180", "planarity": 0.460 }, { "index": 40, "num_nts": 3, "nts_short": "GCC", "nts_long": "///2/1108,///2/1109,///2/1124", "planarity": 0.700 }, { "index": 41, "num_nts": 3, "nts_short": "GUA", "nts_long": "///2/1171,///2/1172,///2/1188", "planarity": 0.393 }, { "index": 42, "num_nts": 3, "nts_short": "UAA", "nts_long": "///2/1203,///2/1697,///2/1699", "planarity": 0.792 }, { "index": 43, "num_nts": 3, "nts_short": "CUG", "nts_long": "///2/1206,///2/1692,///2/1693", "planarity": 1.396 }, { "index": 44, "num_nts": 3, "nts_short": "ACC", "nts_long": "///2/1214,///2/1682,///2/1684", "planarity": 0.605 }, { "index": 45, "num_nts": 3, "nts_short": "AUC", "nts_long": "///2/1217,///2/1681,///2/1683", "planarity": 0.429 }, { "index": 46, "num_nts": 3, "nts_short": "GCG", "nts_long": "///2/1229,///2/1529,///2/1665", "planarity": 0.719 }, { "index": 47, "num_nts": 3, "nts_short": "CGG", "nts_long": "///2/1230,///2/1528,///2/1665", "planarity": 0.582 }, { "index": 48, "num_nts": 3, "nts_short": "GCC", "nts_long": "///2/1233,///2/1252,///2/1525", "planarity": 0.472 }, { "index": 49, "num_nts": 3, "nts_short": "GCA", "nts_long": "///2/1236,///2/1521,///2/1522", "planarity": 0.338 }, { "index": 50, "num_nts": 3, "nts_short": "ACG", "nts_long": "///2/1240,///2/1267,///2/1515", "planarity": 0.683 }, { "index": 51, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/1269,///2/1298,///2/1513", "planarity": 0.744 }, { "index": 52, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/1270,///2/1298,///2/1513", "planarity": 0.768 }, { "index": 53, "num_nts": 3, "nts_short": "CGU", "nts_long": "///2/1292,///2/1302,///2/1307", "planarity": 0.319 }, { "index": 54, "num_nts": 3, "nts_short": "GGU", "nts_long": "///2/1330,///2/1334,///2/1496", "planarity": 0.404 }, { "index": 55, "num_nts": 3, "nts_short": "ACU", "nts_long": "///2/1332,///2/1493,///2/1499", "planarity": 0.323 }, { "index": 56, "num_nts": 3, "nts_short": "GUG", "nts_long": "///2/1335,///2/1492,///2/1495", "planarity": 0.437 }, { "index": 57, "num_nts": 3, "nts_short": "GAU", "nts_long": "///2/1351,///2/1353,///2/1358", "planarity": 0.742 }, { "index": 58, "num_nts": 3, "nts_short": "CUG", "nts_long": "///2/1363,///2/1364,///2/1375", "planarity": 0.247 }, { "index": 59, "num_nts": 3, "nts_short": "AUA", "nts_long": "///2/1401,///2/1445,///2/1580", "planarity": 0.763 }, { "index": 60, "num_nts": 3, "nts_short": "GGG", "nts_long": "///2/1451,///2/1473,///2/1475", "planarity": 0.801 }, { "index": 61, "num_nts": 3, "nts_short": "CGG", "nts_long": "///2/1534,///2/1598,///2/1600", "planarity": 0.574 }, { "index": 62, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/1546,///2/1654,///2/1670", "planarity": 0.830 }, { "index": 63, "num_nts": 3, "nts_short": "GCG", "nts_long": "///2/1546,///2/1655,///2/1669", "planarity": 0.865 }, { "index": 64, "num_nts": 3, "nts_short": "AGC", "nts_long": "///2/1569,///2/1613,///2/1626", "planarity": 0.338 }, { "index": 65, "num_nts": 3, "nts_short": "UAA", "nts_long": "///2/1616,///2/1620,///2/1661", "planarity": 0.447 }, { "index": 66, "num_nts": 3, "nts_short": "GUA", "nts_long": "///2/1648,///2/1649,///2/1675", "planarity": 0.750 }, { "index": 67, "num_nts": 3, "nts_short": "AGA", "nts_long": "///2/1650,///2/1674,///2/1675", "planarity": 1.042 }, { "index": 68, "num_nts": 3, "nts_short": "GAG", "nts_long": "///2/1693,///2/1834,///2/1837", "planarity": 0.781 }, { "index": 69, "num_nts": 3, "nts_short": "CUA", "nts_long": "///2/1704,///2/1830,///2/1831", "planarity": 0.341 }, { "index": 70, "num_nts": 3, "nts_short": "CGA", "nts_long": "///2/1705,///2/1829,///2/1851", "planarity": 0.718 }, { "index": 71, "num_nts": 3, "nts_short": "GCG", "nts_long": "///2/1706,///2/1828,///2/1849", "planarity": 0.664 }, { "index": 72, "num_nts": 3, "nts_short": "GAC", "nts_long": "///2/1749,///2/1781,///2/1785", "planarity": 0.693 }, { "index": 73, "num_nts": 3, "nts_short": "CGU", "nts_long": "///z/156,///z/171,///z/228", "planarity": 0.394 }, { "index": 74, "num_nts": 3, "nts_short": "AGC", "nts_long": "///z/165,///z/230,///z/237", "planarity": 0.665 }, { "index": 75, "num_nts": 3, "nts_short": "UCG", "nts_long": "///z/306,///z/308,///z/328", "planarity": 0.477 }, { "index": 76, "num_nts": 4, "nts_short": "UCAU", "nts_long": "///2/51,///2/472,///2/476,///2/488", "planarity": 0.553 }, { "index": 77, "num_nts": 4, "nts_short": "CGCA", "nts_long": "///2/58,///2/62,///2/86,///2/171", "planarity": 0.557 }, { "index": 78, "num_nts": 4, "nts_short": "CAGA", "nts_long": "///2/490,///2/493,///2/510,///2/574", "planarity": 0.805 }, { "index": 79, "num_nts": 4, "nts_short": "AUGC", "nts_long": "///2/1035,///2/1081,///2/1843,///2/1856", "planarity": 0.590 }, { "index": 80, "num_nts": 4, "nts_short": "UGCA", "nts_long": "///2/1088,///2/1141,///2/1146,///2/1150", "planarity": 0.377 }, { "index": 81, "num_nts": 4, "nts_short": "AUGA", "nts_long": "///2/1228,///2/1530,///2/1605,///2/1634", "planarity": 0.906 }, { "index": 82, "num_nts": 4, "nts_short": "AGUU", "nts_long": "///2/1287,///2/1312,///2/1314,///2/1315", "planarity": 0.993 }, { "index": 83, "num_nts": 4, "nts_short": "GCGA", "nts_long": "///2/1366,///2/1373,///2/1461,///2/1465", "planarity": 0.439 }, { "index": 84, "num_nts": 4, "nts_short": "GCUC", "nts_long": "///2/1406,///2/1440,///2/1442,///2/1443", "planarity": 0.381 }, { "index": 85, "num_nts": 4, "nts_short": "GCGC", "nts_long": "///2/1550,///2/1558,///2/1577,///2/1582", "planarity": 0.981 }, { "index": 86, "num_nts": 4, "nts_short": "GCGC", "nts_long": "///2/1550,///2/1559,///2/1576,///2/1582", "planarity": 1.017 }, { "index": 87, "num_nts": 4, "nts_short": "AAUU", "nts_long": "///z/155,///z/172,///z/227,///z/228", "planarity": 0.986 }, { "index": 88, "num_nts": 5, "nts_short": "UACCG", "nts_long": "///2/1239,///2/1241,///2/1264,///2/1266,///2/1516", "planarity": 1.596 } ], "num_helices": 65, "helices": [ { "index": 1, "num_stems": 3, "strand1": "UCUCAAAAUACCUCCC", "strand2": "AAAGCGUGAUGGAGGG", "bp_type": "|.||..|.||||||||", "helix_form": "..A.x.x.xAAxxAA", "helical_rise": 3.064, "helical_rise_std": 1.085, "helical_radius": 10.144, "helical_radius_std": 3.510, "helical_axis": [ 0.504, -0.042, -0.863 ], "point1": [ 227.625, 160.060, 194.988 ], "point2": [ 250.937, 158.131, 155.069 ], "num_pairs": 16, "pairs": [ { "index": 1, "nt1": "///2/34", "nt2": "///2/521", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.121, -0.207, -0.981, -3.873, 3.918, -2.040 ], "step_params": [ 0.984, -1.331, 3.212, -2.026, 8.013, 36.110 ], "heli_params": [ -3.100, -1.804, 2.806, 12.722, 3.217, 37.013 ], "bp2_params": [ 2.144, 0.267, -0.357, 2.195, -2.016, 15.881 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.212, "simple_Twist": 23.660, "simple_hRise": 2.539, "simple_hTwist": 25.042 }, { "index": 2, "nt1": "///2/35", "nt2": "///2/520", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.144, 0.267, -0.357, 2.195, -2.016, 15.881 ], "step_params": [ -1.002, -2.343, 3.212, -3.808, 6.758, 23.656 ], "heli_params": [ -7.282, 1.287, 2.580, 15.945, 8.985, 24.879 ], "bp2_params": [ -0.072, -0.091, -0.053, 0.869, 8.348, 2.863 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.212, "simple_Twist": 35.776, "simple_hRise": 2.826, "simple_hTwist": 36.581 }, { "index": 3, "nt1": "///2/36", "nt2": "///2/519", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.072, -0.091, -0.053, 0.869, 8.348, 2.863 ], "step_params": [ 0.404, -2.421, 3.334, 7.414, 9.934, 28.620 ], "heli_params": [ -6.248, 0.546, 2.408, 19.009, -14.186, 31.138 ], "bp2_params": [ 0.168, -0.163, -0.474, -3.495, 3.483, 0.688 ], "groove_widths": [ 17.215, null, 17.452, null ], "simple_Rise": 3.334, "simple_Twist": 27.225, "simple_hRise": 2.353, "simple_hTwist": 29.865 }, { "index": 4, "nt1": "///2/37", "nt2": "///2/518", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.168, -0.163, -0.474, -3.495, 3.483, 0.688 ], "step_params": [ 0.081, -0.753, 3.292, -1.973, 3.009, 55.857 ], "heli_params": [ -0.975, -0.199, 3.246, 3.208, 2.104, 55.964 ], "bp2_params": [ 6.815, -3.984, -0.522, 1.146, 7.956, 8.584 ], "groove_widths": [ 16.978, 15.216, 15.567, 14.388 ], "simple_Rise": 3.292, "simple_Twist": 10.222, "simple_hRise": 2.883, "simple_hTwist": 10.835 }, { "index": 5, "nt1": "///2/38", "nt2": "///2/517", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm-W", "bp1_params": [ 6.815, -3.984, -0.522, 1.146, 7.956, 8.584 ], "step_params": [ 0.265, -2.951, 3.466, 1.352, 3.102, -7.277 ], "heli_params": [ 9.941, 6.750, 4.239, -22.885, 9.972, -8.024 ], "bp2_params": [ -7.331, -5.110, 0.243, -3.824, 5.907, -18.254 ], "groove_widths": [ 17.091, 13.612, 15.537, 13.481 ], "simple_Rise": 3.466, "simple_Twist": 88.802, "simple_hRise": 3.386, "simple_hTwist": 88.853 }, { "index": 6, "nt1": "///2/39", "nt2": "///2/515", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -7.331, -5.110, 0.243, -3.824, 5.907, -18.254 ], "step_params": [ 0.732, -0.808, 3.523, -2.049, 10.331, 65.440 ], "heli_params": [ -1.179, -0.758, 3.355, 9.492, 1.882, 66.189 ], "bp2_params": [ -0.052, -0.099, -0.631, 1.697, -14.063, 0.946 ], "groove_widths": [ 15.795, 9.394, 12.619, 10.003 ], "simple_Rise": 3.523, "simple_Twist": 16.422, "simple_hRise": 2.471, "simple_hTwist": 19.489 }, { "index": 7, "nt1": "///2/40", "nt2": "///2/514", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.052, -0.099, -0.631, 1.697, -14.063, 0.946 ], "step_params": [ 0.614, -0.132, 3.421, 7.262, 4.627, 69.620 ], "heli_params": [ -0.288, -0.263, 3.450, 4.037, -6.336, 70.084 ], "bp2_params": [ 4.196, 1.541, -0.821, -0.032, -7.780, 63.190 ], "groove_widths": [ 16.774, 10.466, 12.073, 9.254 ], "simple_Rise": 3.421, "simple_Twist": 41.783, "simple_hRise": 3.443, "simple_hTwist": 42.622 }, { "index": 8, "nt1": "///2/486", "nt2": "///2/513", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "bp1_params": [ 4.196, 1.541, -0.821, -0.032, -7.780, 63.190 ], "step_params": [ -3.208, -2.913, 3.705, 16.045, 9.748, 7.097 ], "heli_params": [ -9.437, 10.979, -2.660, 36.072, -59.375, 20.060 ], "bp2_params": [ -0.052, -0.189, -0.686, -1.438, 0.035, 3.455 ], "groove_widths": [ 18.000, 14.297, 15.115, 11.186 ], "simple_Rise": 3.705, "simple_Twist": 34.876, "simple_hRise": 1.328, "simple_hTwist": 39.470 }, { "index": 9, "nt1": "///2/487", "nt2": "///2/512", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.052, -0.189, -0.686, -1.438, 0.035, 3.455 ], "step_params": [ -0.644, -1.482, 3.642, 2.755, 7.311, 31.588 ], "heli_params": [ -3.998, 1.658, 3.163, 13.179, -4.966, 32.516 ], "bp2_params": [ 0.071, -0.124, -0.569, -3.586, 3.048, -1.824 ], "groove_widths": [ 17.015, 15.746, 20.876, 16.903 ], "simple_Rise": 3.642, "simple_Twist": 30.672, "simple_hRise": 3.146, "simple_hTwist": 31.628 }, { "index": 10, "nt1": "///2/489", "nt2": "///2/511", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.071, -0.124, -0.569, -3.586, 3.048, -1.824 ], "step_params": [ -0.591, -1.926, 3.246, -1.349, 3.615, 38.568 ], "heli_params": [ -3.331, 0.731, 3.079, 5.457, 2.037, 38.753 ], "bp2_params": [ 0.162, -0.176, -0.496, 0.749, 7.644, -0.322 ], "groove_widths": [ 17.490, 12.945, 20.144, 19.979 ], "simple_Rise": 3.246, "simple_Twist": 38.239, "simple_hRise": 3.077, "simple_hTwist": 38.426 }, { "index": 11, "nt1": "///2/490", "nt2": "///2/510", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.162, -0.176, -0.496, 0.749, 7.644, -0.322 ], "step_params": [ 0.126, -1.725, 3.225, 5.537, 11.734, 31.325 ], "heli_params": [ -4.667, 0.587, 2.429, 20.657, -9.747, 33.844 ], "bp2_params": [ 0.177, -0.201, -0.703, -0.383, -0.466, 0.561 ], "groove_widths": [ 16.834, 10.384, 13.621, 13.348 ], "simple_Rise": 3.225, "simple_Twist": 31.392, "simple_hRise": 2.431, "simple_hTwist": 33.905 }, { "index": 12, "nt1": "///2/491", "nt2": "///2/509", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.177, -0.201, -0.703, -0.383, -0.466, 0.561 ], "step_params": [ -6.791, -0.200, 3.528, -5.583, -11.048, 86.983 ], "heli_params": [ 0.125, 4.765, 3.872, -7.992, 4.039, 87.685 ], "bp2_params": [ -0.077, -0.432, -1.287, -5.991, -10.142, 3.995 ], "groove_widths": [ 15.927, 12.835, 13.439, 12.415 ], "simple_Rise": 3.528, "simple_Twist": 88.160, "simple_hRise": 3.865, "simple_hTwist": 88.848 }, { "index": 13, "nt1": "///2/495", "nt2": "///2/508", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.077, -0.432, -1.287, -5.991, -10.142, 3.995 ], "step_params": [ 2.008, -0.412, 3.908, -2.525, -1.047, 36.952 ], "heli_params": [ -0.483, -3.559, 3.777, -1.650, 3.977, 37.049 ], "bp2_params": [ 0.155, -0.127, -0.231, -0.217, -3.453, 0.524 ], "groove_widths": [ 16.434, null, 12.299, null ], "simple_Rise": 3.908, "simple_Twist": 35.637, "simple_hRise": 3.772, "simple_hTwist": 35.739 }, { "index": 14, "nt1": "///2/496", "nt2": "///2/506", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.155, -0.127, -0.231, -0.217, -3.453, 0.524 ], "step_params": [ -0.425, -1.486, 3.605, 0.219, 2.166, 31.347 ], "heli_params": [ -3.185, 0.829, 3.494, 4.003, -0.404, 31.421 ], "bp2_params": [ 0.158, -0.224, -0.767, 0.724, 0.192, -0.186 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.605, "simple_Twist": 31.505, "simple_hRise": 3.494, "simple_hTwist": 31.578 }, { "index": 15, "nt1": "///2/497", "nt2": "///2/505", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.158, -0.224, -0.767, 0.724, 0.192, -0.186 ], "step_params": [ -0.387, -1.783, 3.360, -5.045, 13.695, 30.521 ], "heli_params": [ -5.131, -0.093, 2.397, 24.345, 8.968, 33.756 ], "bp2_params": [ 0.079, 0.113, -0.126, 2.743, 23.480, -4.151 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.360, "simple_Twist": 30.860, "simple_hRise": 2.409, "simple_hTwist": 34.061 }, { "index": 16, "nt1": "///2/498", "nt2": "///2/504", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 2, "num_stems": 2, "strand1": "GCCUGC", "strand2": "CGGACG", "bp_type": "||||||", "helix_form": "A.x.A", "helical_rise": 2.666, "helical_rise_std": 0.484, "helical_radius": 9.667, "helical_radius_std": 2.918, "helical_axis": [ 0.416, -0.357, -0.836 ], "point1": [ 246.063, 176.315, 175.724 ], "point2": [ 251.599, 171.567, 164.601 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/47", "nt2": "///2/479", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.117, -0.253, -1.065, -6.650, 1.854, -0.922 ], "step_params": [ -0.217, -1.582, 3.244, -1.876, 2.828, 31.341 ], "heli_params": [ -3.424, 0.059, 3.101, 5.216, 3.460, 31.520 ], "bp2_params": [ 0.113, -0.219, -0.819, 0.322, 6.187, -1.084 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.244, "simple_Twist": 29.755, "simple_hRise": 3.092, "simple_hTwist": 29.943 }, { "index": 2, "nt1": "///2/48", "nt2": "///2/478", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.113, -0.219, -0.819, 0.322, 6.187, -1.084 ], "step_params": [ 1.038, -2.579, 3.532, 2.951, 10.481, 24.327 ], "heli_params": [ -8.186, -1.527, 2.346, 23.428, -6.597, 26.619 ], "bp2_params": [ 0.177, -0.169, -0.510, -0.081, -4.012, 1.790 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.532, "simple_Twist": 23.962, "simple_hRise": 2.326, "simple_hTwist": 26.287 }, { "index": 3, "nt1": "///2/49", "nt2": "///2/477", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.177, -0.169, -0.510, -0.081, -4.012, 1.790 ], "step_params": [ -3.213, -1.407, 4.370, 2.699, 4.796, 48.422 ], "heli_params": [ -2.179, 4.162, 4.048, 5.826, -3.278, 48.715 ], "bp2_params": [ -0.097, -0.246, 0.947, 4.229, 0.975, -1.932 ], "groove_widths": [ 19.328, null, 16.617, null ], "simple_Rise": 4.370, "simple_Twist": 50.116, "simple_hRise": 4.061, "simple_hTwist": 50.398 }, { "index": 4, "nt1": "///2/51", "nt2": "///2/476", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.097, -0.246, 0.947, 4.229, 0.975, -1.932 ], "step_params": [ -0.750, -1.721, 2.922, -1.320, 29.845, 32.738 ], "heli_params": [ -4.305, 0.911, 1.084, 43.386, 1.918, 44.042 ], "bp2_params": [ -0.159, -0.112, 0.331, 7.268, -1.447, 1.040 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.922, "simple_Twist": 33.372, "simple_hRise": 1.116, "simple_hTwist": 44.505 }, { "index": 5, "nt1": "///2/52", "nt2": "///2/475", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.112, 0.331, 7.268, -1.447, 1.040 ], "step_params": [ 0.402, -1.655, 3.225, 1.606, 0.487, 36.302 ], "heli_params": [ -2.720, -0.424, 3.218, 0.782, -2.576, 36.340 ], "bp2_params": [ 0.233, -0.150, 0.152, 8.770, -10.089, 0.671 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.225, "simple_Twist": 34.211, "simple_hRise": 3.217, "simple_hTwist": 34.251 }, { "index": 6, "nt1": "///2/53", "nt2": "///2/474", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 3, "num_stems": 3, "strand1": "UGUAGUAGACG", "strand2": "GCGUCAAGUGA", "bp_type": ".|||||..||.", "helix_form": "..xxAxxxA.", "helical_rise": 3.544, "helical_rise_std": 0.862, "helical_radius": 9.031, "helical_radius_std": 2.202, "helical_axis": [ 0.715, -0.698, 0.027 ], "point1": [ 253.360, 161.307, 146.804 ], "point2": [ 278.566, 136.700, 147.742 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///2/55", "nt2": "///2/90", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ 1.870, 6.482, -0.709, 35.827, -16.103, 147.117 ], "step_params": [ 1.857, -2.336, 4.021, 31.642, 24.724, -71.963 ], "heli_params": [ 0.984, 2.470, 3.624, -19.633, 25.126, -81.066 ], "bp2_params": [ -0.304, 0.574, -1.500, 0.281, -6.756, 4.417 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.021, "simple_Twist": 4.994, "simple_hRise": 0.532, "simple_hTwist": 40.453 }, { "index": 2, "nt1": "///2/56", "nt2": "///2/89", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.304, 0.574, -1.500, 0.281, -6.756, 4.417 ], "step_params": [ 0.428, -0.949, 3.660, 2.400, 1.161, 35.886 ], "heli_params": [ -1.722, -0.311, 3.649, 1.881, -3.889, 35.982 ], "bp2_params": [ 2.819, -0.345, -1.588, 7.815, -10.193, 1.721 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.660, "simple_Twist": 19.189, "simple_hRise": 3.622, "simple_hTwist": 19.371 }, { "index": 3, "nt1": "///2/57", "nt2": "///2/88", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.819, -0.345, -1.588, 7.815, -10.193, 1.721 ], "step_params": [ -1.778, -1.205, 3.411, -12.625, 20.564, 37.552 ], "heli_params": [ -3.593, 1.126, 2.855, 28.624, 17.573, 44.400 ], "bp2_params": [ 0.003, -0.171, 0.701, -5.288, 2.517, 0.344 ], "groove_widths": [ 18.372, null, 15.538, null ], "simple_Rise": 3.411, "simple_Twist": 52.458, "simple_hRise": 3.102, "simple_hTwist": 57.383 }, { "index": 4, "nt1": "///2/500", "nt2": "///2/87", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.003, -0.171, 0.701, -5.288, 2.517, 0.344 ], "step_params": [ -2.843, -1.956, 3.034, 4.752, 1.405, 51.573 ], "heli_params": [ -2.323, 3.537, 2.730, 1.611, -5.447, 51.794 ], "bp2_params": [ -0.198, -0.126, 0.065, 1.891, 3.185, 3.267 ], "groove_widths": [ 17.590, 14.796, 11.966, 10.762 ], "simple_Rise": 3.034, "simple_Twist": 52.998, "simple_hRise": 2.739, "simple_hTwist": 53.212 }, { "index": 5, "nt1": "///2/62", "nt2": "///2/86", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.126, 0.065, 1.891, 3.185, 3.267 ], "step_params": [ 0.833, -2.339, 3.520, 2.504, 0.577, 29.673 ], "heli_params": [ -4.681, -1.057, 3.532, 1.123, -4.878, 29.782 ], "bp2_params": [ 0.010, -0.119, 0.230, 2.059, 3.087, 8.405 ], "groove_widths": [ 18.274, 15.305, 18.202, 18.196 ], "simple_Rise": 3.520, "simple_Twist": 28.308, "simple_hRise": 3.532, "simple_hTwist": 28.422 }, { "index": 6, "nt1": "///2/63", "nt2": "///2/85", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.010, -0.119, 0.230, 2.059, 3.087, 8.405 ], "step_params": [ -2.373, -3.969, 6.030, 7.784, 26.563, 57.360 ], "heli_params": [ -5.658, 2.813, 3.732, 26.077, -7.642, 63.174 ], "bp2_params": [ 5.632, -1.247, 0.490, 15.947, 27.606, -83.813 ], "groove_widths": [ 20.183, 15.152, 13.619, 13.591 ], "simple_Rise": 6.030, "simple_Twist": 27.169, "simple_hRise": 1.137, "simple_hTwist": 38.599 }, { "index": 7, "nt1": "///2/64", "nt2": "///2/83", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 5.632, -1.247, 0.490, 15.947, 27.606, -83.813 ], "step_params": [ 0.213, -0.035, 3.596, -9.919, -7.753, 7.173 ], "heli_params": [ 7.307, -10.374, 1.658, -37.224, 47.621, 14.482 ], "bp2_params": [ -7.973, -4.970, -0.038, 4.769, -13.998, -43.033 ], "groove_widths": [ 20.461, 14.168, 12.997, 12.790 ], "simple_Rise": 3.596, "simple_Twist": 86.796, "simple_hRise": 3.555, "simple_hTwist": 87.525 }, { "index": 8, "nt1": "///2/66", "nt2": "///2/82", "bp": "G-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -7.973, -4.970, -0.038, 4.769, -13.998, -43.033 ], "step_params": [ 0.596, -2.536, 3.781, -0.926, 6.931, 79.087 ], "heli_params": [ -2.197, -0.495, 3.579, 5.433, 0.726, 79.345 ], "bp2_params": [ 0.097, -0.135, -0.743, -3.824, 1.276, -0.298 ], "groove_widths": [ 18.565, null, 12.049, null ], "simple_Rise": 3.781, "simple_Twist": 29.300, "simple_hRise": 3.093, "simple_hTwist": 30.105 }, { "index": 9, "nt1": "///2/68", "nt2": "///2/81", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.097, -0.135, -0.743, -3.824, 1.276, -0.298 ], "step_params": [ 0.503, -2.011, 3.497, 0.273, 2.034, 27.672 ], "heli_params": [ -4.708, -0.979, 3.348, 4.246, -0.571, 27.747 ], "bp2_params": [ 0.140, -0.138, -0.139, 0.739, 4.154, -1.033 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.497, "simple_Twist": 27.174, "simple_hRise": 3.345, "simple_hTwist": 27.250 }, { "index": 10, "nt1": "///2/69", "nt2": "///2/80", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.140, -0.138, -0.139, 0.739, 4.154, -1.033 ], "step_params": [ 0.104, -1.520, 3.173, 1.408, 2.504, 57.259 ], "heli_params": [ -1.715, -0.035, 3.111, 2.611, -1.469, 57.324 ], "bp2_params": [ 6.814, -3.797, -0.336, 4.088, 2.583, -5.143 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.173, "simple_Twist": 14.820, "simple_hRise": 2.874, "simple_hTwist": 15.095 }, { "index": 11, "nt1": "///2/70", "nt2": "///2/79", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 4, "num_stems": 3, "strand1": "AAAGCUACCACUCC", "strand2": "GUCCGAGGGGGAGG", "bp_type": "...|||.||.|||.", "helix_form": "xxxAA...x.xA.", "helical_rise": 2.811, "helical_rise_std": 0.824, "helical_radius": 9.600, "helical_radius_std": 2.822, "helical_axis": [ 0.526, 0.523, 0.671 ], "point1": [ 244.618, 173.292, 137.890 ], "point2": [ 263.750, 192.327, 162.291 ], "num_pairs": 14, "pairs": [ { "index": 1, "nt1": "///2/92", "nt2": "///2/444", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.691, -4.349, -0.152, -21.378, 32.963, 1.135 ], "step_params": [ -1.782, -0.435, 2.824, 5.248, -4.068, 3.013 ], "heli_params": [ 5.736, 25.831, 0.128, -40.198, -51.863, 7.291 ], "bp2_params": [ -3.181, -0.719, 0.417, -1.616, 10.774, -103.453 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.824, "simple_Twist": -27.304, "simple_hRise": 3.012, "simple_hTwist": -28.085 }, { "index": 2, "nt1": "///2/447", "nt2": "///2/443", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.181, -0.719, 0.417, -1.616, 10.774, -103.453 ], "step_params": [ 0.362, -1.278, 3.143, 0.186, -1.696, 36.805 ], "heli_params": [ -1.799, -0.548, 3.198, -2.685, -0.295, 36.843 ], "bp2_params": [ -2.297, 1.341, 0.172, 11.523, 3.143, -115.222 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.143, "simple_Twist": 31.018, "simple_hRise": 3.209, "simple_hTwist": 31.064 }, { "index": 3, "nt1": "///2/449", "nt2": "///2/442", "bp": "A-C", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -2.297, 1.341, 0.172, 11.523, 3.143, -115.222 ], "step_params": [ 4.360, -1.597, 3.576, 4.046, 12.282, 71.053 ], "heli_params": [ -1.805, -3.558, 3.509, 10.482, -3.453, 72.068 ], "bp2_params": [ -0.189, -0.107, -0.105, 2.246, -4.788, 0.883 ], "groove_widths": [ 17.448, null, 15.358, null ], "simple_Rise": 3.576, "simple_Twist": 59.851, "simple_hRise": 3.480, "simple_hTwist": 61.106 }, { "index": 4, "nt1": "///2/452", "nt2": "///2/441", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.189, -0.107, -0.105, 2.246, -4.788, 0.883 ], "step_params": [ -0.094, -1.668, 3.472, 0.753, 0.110, 32.125 ], "heli_params": [ -3.035, 0.313, 3.463, 0.199, -1.360, 32.134 ], "bp2_params": [ 0.198, -0.169, -0.631, 2.620, -4.950, 2.623 ], "groove_widths": [ 16.384, 15.081, 9.390, 9.340 ], "simple_Rise": 3.472, "simple_Twist": 29.867, "simple_hRise": 3.462, "simple_hTwist": 29.877 }, { "index": 5, "nt1": "///2/453", "nt2": "///2/440", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.198, -0.169, -0.631, 2.620, -4.950, 2.623 ], "step_params": [ 0.069, -1.687, 3.502, -1.050, 1.010, 30.325 ], "heli_params": [ -3.437, -0.355, 3.441, 1.929, 2.006, 30.359 ], "bp2_params": [ -0.052, -0.071, 0.140, 2.257, -5.809, 2.449 ], "groove_widths": [ 17.304, 15.532, 20.943, 15.682 ], "simple_Rise": 3.502, "simple_Twist": 31.747, "simple_hRise": 3.444, "simple_hTwist": 31.779 }, { "index": 6, "nt1": "///2/454", "nt2": "///2/439", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.052, -0.071, 0.140, 2.257, -5.809, 2.449 ], "step_params": [ -0.567, -3.157, 3.357, 19.211, 36.254, 68.697 ], "heli_params": [ -3.322, 0.888, 1.593, 29.646, -15.710, 78.705 ], "bp2_params": [ -1.287, 4.944, -1.399, -14.707, 20.175, -112.762 ], "groove_widths": [ 18.717, 16.524, 16.511, 12.862 ], "simple_Rise": 3.357, "simple_Twist": 27.992, "simple_hRise": -0.544, "simple_hTwist": 49.326 }, { "index": 7, "nt1": "///2/455", "nt2": "///2/438", "bp": "A+G", "name": "--", "Saenger": "09-IX", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ -1.287, 4.944, -1.399, -14.707, 20.175, -112.762 ], "step_params": [ -1.481, 0.774, 3.229, 0.600, 9.465, -8.407 ], "heli_params": [ -13.395, -6.083, 1.639, -48.439, 3.073, -12.667 ], "bp2_params": [ 0.067, -0.512, -1.495, -6.082, 5.102, -7.076 ], "groove_widths": [ 19.397, 17.311, 15.748, 8.122 ], "simple_Rise": 3.229, "simple_Twist": 31.335, "simple_hRise": 3.290, "simple_hTwist": 32.704 }, { "index": 8, "nt1": "///2/456", "nt2": "///2/437", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.067, -0.512, -1.495, -6.082, 5.102, -7.076 ], "step_params": [ 0.342, -0.024, 2.886, 2.565, 5.848, 24.782 ], "heli_params": [ -1.529, -0.127, 2.826, 13.345, -5.852, 25.579 ], "bp2_params": [ -0.081, -0.452, -1.769, 18.478, 0.368, -7.866 ], "groove_widths": [ 19.510, 17.466, 13.756, 10.178 ], "simple_Rise": 2.886, "simple_Twist": 26.645, "simple_hRise": 2.836, "simple_hTwist": 27.386 }, { "index": 9, "nt1": "///2/457", "nt2": "///2/436", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.081, -0.452, -1.769, 18.478, 0.368, -7.866 ], "step_params": [ 0.468, -2.408, 4.159, -15.255, 40.057, 40.817 ], "heli_params": [ -4.588, -1.288, 1.274, 45.215, 17.219, 58.517 ], "bp2_params": [ -0.913, 1.482, -0.307, -13.291, -6.376, -21.712 ], "groove_widths": [ 20.573, 16.504, 16.328, 12.936 ], "simple_Rise": 4.159, "simple_Twist": 43.545, "simple_hRise": 1.437, "simple_hTwist": 60.360 }, { "index": 10, "nt1": "///2/458", "nt2": "///2/471", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.913, 1.482, -0.307, -13.291, -6.376, -21.712 ], "step_params": [ 1.738, -0.496, 3.725, -3.919, 2.779, 38.786 ], "heli_params": [ -1.113, -3.122, 3.497, 4.165, 5.873, 39.071 ], "bp2_params": [ 1.243, 0.679, -0.680, -9.568, -0.559, 10.516 ], "groove_widths": [ 21.821, 15.216, 16.927, 15.838 ], "simple_Rise": 3.725, "simple_Twist": 28.348, "simple_hRise": 3.396, "simple_hTwist": 28.744 }, { "index": 11, "nt1": "///2/459", "nt2": "///2/470", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.243, 0.679, -0.680, -9.568, -0.559, 10.516 ], "step_params": [ -2.185, -5.023, 6.581, -10.627, 18.160, 41.471 ], "heli_params": [ -9.176, 1.149, 4.524, 23.888, 13.979, 46.293 ], "bp2_params": [ -0.105, -0.149, -0.587, -4.706, 4.906, 1.438 ], "groove_widths": [ 21.625, null, 19.976, null ], "simple_Rise": 6.581, "simple_Twist": 48.442, "simple_hRise": 4.882, "simple_hTwist": 52.560 }, { "index": 12, "nt1": "///2/461", "nt2": "///2/468", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.105, -0.149, -0.587, -4.706, 4.906, 1.438 ], "step_params": [ -0.795, -1.677, 3.166, -3.931, 5.572, 28.885 ], "heli_params": [ -4.376, 0.778, 2.880, 10.979, 7.746, 29.663 ], "bp2_params": [ 0.171, -0.155, -0.233, 4.754, 6.889, 0.320 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.166, "simple_Twist": 27.389, "simple_hRise": 2.860, "simple_hTwist": 28.210 }, { "index": 13, "nt1": "///2/462", "nt2": "///2/467", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.171, -0.155, -0.233, 4.754, 6.889, 0.320 ], "step_params": [ -1.582, -1.041, 3.402, 8.669, 11.645, 92.732 ], "heli_params": [ -0.931, 1.247, 3.165, 8.006, -5.960, 93.605 ], "bp2_params": [ 1.564, -4.429, 0.221, -10.427, -15.390, -106.388 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.402, "simple_Twist": 0.932, "simple_hRise": -1.558, "simple_hTwist": 14.547 }, { "index": 14, "nt1": "///2/463", "nt2": "///2/466", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "t.W", "DSSR": "t.+W" } ] }, { "index": 5, "num_stems": 2, "strand1": "GCUCCGGG", "strand2": "AGAGGCCA", "bp_type": ".||||||.", "helix_form": "AAAxAAx", "helical_rise": 2.589, "helical_rise_std": 0.315, "helical_radius": 9.698, "helical_radius_std": 2.745, "helical_axis": [ -0.785, 0.020, 0.619 ], "point1": [ 237.161, 167.428, 153.327 ], "point2": [ 223.114, 167.790, 164.406 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///2/95", "nt2": "///2/435", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.004, 1.338, -0.573, -15.140, -9.562, -20.782 ], "step_params": [ -0.112, -1.259, 3.751, -5.871, 1.974, 30.170 ], "heli_params": [ -2.810, -1.095, 3.619, 3.742, 11.133, 30.785 ], "bp2_params": [ 0.015, 0.228, -0.932, -11.121, 0.282, -7.518 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.751, "simple_Twist": 30.260, "simple_hRise": 3.620, "simple_hTwist": 30.873 }, { "index": 2, "nt1": "///2/96", "nt2": "///2/434", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.015, 0.228, -0.932, -11.121, 0.282, -7.518 ], "step_params": [ 0.447, -0.971, 3.091, -2.795, 4.409, 30.703 ], "heli_params": [ -2.582, -1.323, 2.876, 8.252, 5.231, 31.133 ], "bp2_params": [ -0.091, -0.179, -0.860, 1.486, 3.388, -1.261 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.091, "simple_Twist": 31.507, "simple_hRise": 2.883, "simple_hTwist": 31.926 }, { "index": 3, "nt1": "///2/97", "nt2": "///2/433", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.091, -0.179, -0.860, 1.486, 3.388, -1.261 ], "step_params": [ 0.124, -1.039, 3.210, 3.528, 12.972, 34.750 ], "heli_params": [ -3.239, 0.243, 2.667, 20.782, -5.652, 37.185 ], "bp2_params": [ -0.040, 0.398, -0.572, 12.174, -12.294, -2.040 ], "groove_widths": [ 18.492, null, 14.626, null ], "simple_Rise": 3.210, "simple_Twist": 34.534, "simple_hRise": 2.662, "simple_hTwist": 36.984 }, { "index": 4, "nt1": "///2/98", "nt2": "///2/432", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.040, 0.398, -0.572, 12.174, -12.294, -2.040 ], "step_params": [ -0.271, -1.890, 3.391, -1.089, 15.670, 34.770 ], "heli_params": [ -4.737, 0.288, 2.361, 24.722, 1.718, 38.053 ], "bp2_params": [ 0.153, -0.150, -0.445, 2.364, -0.425, 0.346 ], "groove_widths": [ 17.888, 15.762, 15.068, 9.412 ], "simple_Rise": 3.391, "simple_Twist": 33.349, "simple_hRise": 2.311, "simple_hTwist": 36.768 }, { "index": 5, "nt1": "///2/409", "nt2": "///2/431", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.153, -0.150, -0.445, 2.364, -0.425, 0.346 ], "step_params": [ -0.479, -1.778, 3.333, -2.617, 14.178, 31.512 ], "heli_params": [ -4.996, 0.436, 2.370, 24.561, 4.534, 34.578 ], "bp2_params": [ -0.202, -0.139, -0.014, -0.556, 4.346, 0.730 ], "groove_widths": [ 17.864, null, 15.910, null ], "simple_Rise": 3.333, "simple_Twist": 33.683, "simple_hRise": 2.442, "simple_hTwist": 36.556 }, { "index": 6, "nt1": "///2/410", "nt2": "///2/430", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.202, -0.139, -0.014, -0.556, 4.346, 0.730 ], "step_params": [ 0.804, -1.619, 3.381, 3.029, 8.413, 32.736 ], "heli_params": [ -4.108, -0.899, 2.947, 14.590, -5.253, 33.903 ], "bp2_params": [ 0.408, 0.179, -0.208, -1.401, -4.892, 9.296 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.381, "simple_Twist": 29.471, "simple_hRise": 2.886, "simple_hTwist": 30.768 }, { "index": 7, "nt1": "///2/411", "nt2": "///2/429", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.408, 0.179, -0.208, -1.401, -4.892, 9.296 ], "step_params": [ -3.196, -1.050, 3.622, -1.885, -2.995, 64.036 ], "heli_params": [ -0.844, 2.920, 3.745, -2.822, 1.776, 64.123 ], "bp2_params": [ 3.609, -3.653, -0.383, 0.957, 0.219, -67.154 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.622, "simple_Twist": -28.951, "simple_hRise": 3.289, "simple_hTwist": -29.162 }, { "index": 8, "nt1": "///2/412", "nt2": "///2/812", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W" } ] }, { "index": 6, "num_stems": 1, "strand1": "ACCUCAA", "strand2": "UGGGCAC", "bp_type": ".|||...", "helix_form": "xA.xxx", "helical_rise": 2.961, "helical_rise_std": 0.466, "helical_radius": 8.183, "helical_radius_std": 2.094, "helical_axis": [ -0.872, 0.418, -0.254 ], "point1": [ 222.268, 188.833, 155.528 ], "point2": [ 207.091, 196.109, 151.102 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///2/102", "nt2": "///2/406", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.838, -2.364, 0.486, 21.380, 7.810, -98.685 ], "step_params": [ 1.411, -2.617, 3.656, -10.790, 8.126, 98.481 ], "heli_params": [ -1.859, -1.113, 3.365, 5.346, 7.099, 99.165 ], "bp2_params": [ 0.183, -0.175, 0.488, 4.124, 0.370, 0.926 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.656, "simple_Twist": 67.171, "simple_hRise": 3.129, "simple_hTwist": 68.359 }, { "index": 2, "nt1": "///2/357", "nt2": "///2/405", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.183, -0.175, 0.488, 4.124, 0.370, 0.926 ], "step_params": [ 0.073, -1.968, 3.186, 2.160, 0.458, 33.039 ], "heli_params": [ -3.528, 0.226, 3.158, 0.804, -3.793, 33.110 ], "bp2_params": [ 0.178, -0.127, 0.201, 2.788, -0.515, 1.402 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.186, "simple_Twist": 33.016, "simple_hRise": 3.157, "simple_hTwist": 33.088 }, { "index": 3, "nt1": "///2/358", "nt2": "///2/404", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.127, 0.201, 2.788, -0.515, 1.402 ], "step_params": [ 0.677, -1.842, 3.467, 1.830, -0.276, 35.415 ], "heli_params": [ -2.981, -0.826, 3.510, -0.453, -3.006, 35.462 ], "bp2_params": [ 2.424, 0.102, 0.331, 0.891, -0.309, 13.630 ], "groove_widths": [ 15.133, null, 14.694, null ], "simple_Rise": 3.467, "simple_Twist": 23.133, "simple_hRise": 3.530, "simple_hTwist": 23.206 }, { "index": 4, "nt1": "///2/359", "nt2": "///2/403", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.424, 0.102, 0.331, 0.891, -0.309, 13.630 ], "step_params": [ -1.605, -0.671, 3.146, 16.320, 20.709, 57.031 ], "heli_params": [ -1.481, 2.207, 2.312, 20.527, -16.177, 62.363 ], "bp2_params": [ 2.049, -1.454, -1.029, -16.110, -9.864, 31.256 ], "groove_widths": [ 14.841, null, 12.095, null ], "simple_Rise": 3.146, "simple_Twist": 54.925, "simple_hRise": 2.269, "simple_hTwist": 60.479 }, { "index": 5, "nt1": "///2/362", "nt2": "///2/402", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.049, -1.454, -1.029, -16.110, -9.864, 31.256 ], "step_params": [ -3.111, -0.481, 3.675, -5.978, -4.002, 6.878 ], "heli_params": [ 8.563, 1.007, 4.602, -25.782, 38.510, 9.950 ], "bp2_params": [ 4.906, 1.806, -1.121, -18.802, -14.568, -103.177 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.675, "simple_Twist": 0.065, "simple_hRise": 2.886, "simple_hTwist": 7.195 }, { "index": 6, "nt1": "///2/360", "nt2": "///2/401", "bp": "A-A", "name": "--", "Saenger": "05-V", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.906, 1.806, -1.121, -18.802, -14.568, -103.177 ], "step_params": [ 4.945, -0.187, 2.931, -2.342, -13.107, 4.144 ], "heli_params": [ 8.623, -22.051, 0.219, -71.654, 12.802, 13.941 ], "bp2_params": [ -5.494, -3.696, 1.063, -21.172, 48.912, 3.345 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.931, "simple_Twist": 67.912, "simple_hRise": 2.772, "simple_hTwist": 69.051 }, { "index": 7, "nt1": "///2/363", "nt2": "///2/400", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tH.", "DSSR": "tM-." } ] }, { "index": 7, "num_stems": 3, "strand1": "ACAGUUAUUUCUUUGGU", "strand2": "CGUCUGCAAGCUUACCC", "bp_type": ".|||.|.|||...|||.", "helix_form": "xAA....x..x..AA.", "helical_rise": 3.045, "helical_rise_std": 0.827, "helical_radius": 9.223, "helical_radius_std": 2.850, "helical_axis": [ 0.430, -0.739, -0.519 ], "point1": [ 216.622, 179.363, 152.662 ], "point2": [ 237.450, 143.575, 127.489 ], "num_pairs": 17, "pairs": [ { "index": 1, "nt1": "///2/104", "nt2": "///2/356", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ -7.249, 5.204, 0.503, 1.141, -38.681, -166.494 ], "step_params": [ -1.624, -0.531, 8.420, -1.475, -14.604, 29.913 ], "heli_params": [ 5.506, 2.188, 7.894, -26.387, 2.665, 33.247 ], "bp2_params": [ 0.165, -0.187, -0.594, -0.748, -0.799, 0.457 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 8.420, "simple_Twist": 45.236, "simple_hRise": 8.252, "simple_hTwist": 47.439 }, { "index": 2, "nt1": "///2/106", "nt2": "///2/355", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.187, -0.594, -0.748, -0.799, 0.457 ], "step_params": [ -0.335, -1.310, 3.416, -3.289, 11.600, 30.487 ], "heli_params": [ -4.287, 0.038, 2.767, 21.054, 5.970, 32.732 ], "bp2_params": [ 0.037, -0.104, -0.219, -0.700, -1.258, 0.982 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.416, "simple_Twist": 31.216, "simple_hRise": 2.786, "simple_hTwist": 33.409 }, { "index": 3, "nt1": "///2/107", "nt2": "///2/354", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.037, -0.104, -0.219, -0.700, -1.258, 0.982 ], "step_params": [ -0.447, -1.194, 3.215, -0.597, 12.001, 28.904 ], "heli_params": [ -4.300, 0.726, 2.538, 22.837, 1.136, 31.253 ], "bp2_params": [ -0.178, -0.203, -0.461, 9.099, 14.286, -2.425 ], "groove_widths": [ 18.936, null, 14.199, null ], "simple_Rise": 3.215, "simple_Twist": 30.030, "simple_hRise": 2.569, "simple_hTwist": 32.294 }, { "index": 4, "nt1": "///2/108", "nt2": "///2/353", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.178, -0.203, -0.461, 9.099, 14.286, -2.425 ], "step_params": [ 0.661, -0.909, 3.507, 11.569, 20.151, 40.657 ], "heli_params": [ -2.924, 0.184, 2.862, 26.552, -15.244, 46.583 ], "bp2_params": [ 1.984, -1.397, -1.454, 9.167, -16.025, 5.620 ], "groove_widths": [ 17.940, 15.508, 16.012, 10.235 ], "simple_Rise": 3.507, "simple_Twist": 27.779, "simple_hRise": 2.429, "simple_hTwist": 36.068 }, { "index": 5, "nt1": "///2/109", "nt2": "///2/352", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.984, -1.397, -1.454, 9.167, -16.025, 5.620 ], "step_params": [ 1.297, -1.927, 3.858, 1.965, 2.189, 31.422 ], "heli_params": [ -4.020, -1.957, 3.791, 4.031, -3.618, 31.556 ], "bp2_params": [ 1.772, -0.124, -0.274, 3.907, -18.931, 15.463 ], "groove_widths": [ 17.029, 14.610, 17.169, 13.435 ], "simple_Rise": 3.858, "simple_Twist": 33.577, "simple_hRise": 3.796, "simple_hTwist": 33.701 }, { "index": 6, "nt1": "///2/110", "nt2": "///2/351", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.772, -0.124, -0.274, 3.907, -18.931, 15.463 ], "step_params": [ -1.132, -1.817, 3.660, 12.743, 25.520, 29.961 ], "heli_params": [ -5.024, 2.829, 1.249, 39.831, -19.889, 41.141 ], "bp2_params": [ 2.364, 0.294, -1.032, -15.699, -6.652, 9.613 ], "groove_widths": [ 17.442, 14.769, 18.631, 16.132 ], "simple_Rise": 3.660, "simple_Twist": 26.980, "simple_hRise": 1.026, "simple_hTwist": 39.070 }, { "index": 7, "nt1": "///2/111", "nt2": "///2/350", "bp": "A-C", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.364, 0.294, -1.032, -15.699, -6.652, 9.613 ], "step_params": [ -0.405, -0.613, 3.688, 0.410, 3.314, 14.316 ], "heli_params": [ -5.564, 1.976, 3.444, 13.068, -1.615, 14.698 ], "bp2_params": [ -0.027, -0.332, -1.188, -3.850, -3.868, 1.982 ], "groove_widths": [ 18.399, 15.579, 17.930, 17.396 ], "simple_Rise": 3.688, "simple_Twist": 27.557, "simple_hRise": 3.585, "simple_hTwist": 27.755 }, { "index": 8, "nt1": "///2/112", "nt2": "///2/349", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.027, -0.332, -1.188, -3.850, -3.868, 1.982 ], "step_params": [ -1.554, -0.261, 3.403, -4.570, 10.288, 50.392 ], "heli_params": [ -1.038, 1.459, 3.412, 11.912, 5.291, 51.554 ], "bp2_params": [ 0.697, 0.549, -0.876, 2.639, 12.507, 8.549 ], "groove_widths": [ 18.248, 16.168, 18.950, 18.945 ], "simple_Rise": 3.403, "simple_Twist": 46.296, "simple_hRise": 3.405, "simple_hTwist": 47.571 }, { "index": 9, "nt1": "///2/115", "nt2": "///2/348", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.697, 0.549, -0.876, 2.639, 12.507, 8.549 ], "step_params": [ -0.752, -1.510, 3.239, 0.111, 2.193, 34.944 ], "heli_params": [ -2.832, 1.267, 3.139, 3.647, -0.184, 35.010 ], "bp2_params": [ 1.584, -0.771, -0.541, 11.168, 7.843, -7.700 ], "groove_widths": [ 19.657, 16.384, 17.090, 16.304 ], "simple_Rise": 3.239, "simple_Twist": 29.927, "simple_hRise": 3.121, "simple_hTwist": 30.006 }, { "index": 10, "nt1": "///2/116", "nt2": "///2/347", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.584, -0.771, -0.541, 11.168, 7.843, -7.700 ], "step_params": [ 0.053, -1.413, 3.495, 0.441, 2.341, 33.036 ], "heli_params": [ -2.895, -0.014, 3.390, 4.111, -0.775, 33.119 ], "bp2_params": [ 5.796, -2.479, -0.360, 16.136, -0.995, 20.343 ], "groove_widths": [ 21.157, 17.613, 19.827, 16.712 ], "simple_Rise": 3.495, "simple_Twist": 3.175, "simple_hRise": 1.968, "simple_hTwist": 3.969 }, { "index": 11, "nt1": "///2/117", "nt2": "///2/346", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "bp1_params": [ 5.796, -2.479, -0.360, 16.136, -0.995, 20.343 ], "step_params": [ -3.380, -0.696, 4.284, 0.672, 16.125, 23.344 ], "heli_params": [ -6.045, 7.102, 3.073, 34.992, -1.459, 28.316 ], "bp2_params": [ -2.423, -1.842, 1.966, 21.825, 17.384, 6.302 ], "groove_widths": [ 19.921, 17.011, 13.074, 12.041 ], "simple_Rise": 4.284, "simple_Twist": 76.949, "simple_hRise": 4.073, "simple_hTwist": 78.366 }, { "index": 12, "nt1": "///2/119", "nt2": "///2/345", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.423, -1.842, 1.966, 21.825, 17.384, 6.302 ], "step_params": [ -0.230, -1.924, 3.749, 9.131, 16.333, 38.855 ], "heli_params": [ -4.301, 1.250, 2.655, 23.001, -12.859, 42.969 ], "bp2_params": [ -2.761, -1.215, -0.258, -3.465, -11.855, 6.427 ], "groove_widths": [ 18.177, 14.970, 10.806, 9.773 ], "simple_Rise": 3.749, "simple_Twist": 40.389, "simple_hRise": 2.705, "simple_hTwist": 44.348 }, { "index": 13, "nt1": "///2/120", "nt2": "///2/344", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.761, -1.215, -0.258, -3.465, -11.855, 6.427 ], "step_params": [ -0.334, -1.138, 3.276, -1.922, 2.904, 43.743 ], "heli_params": [ -1.796, 0.266, 3.209, 3.890, 2.575, 43.874 ], "bp2_params": [ -0.063, -0.130, -0.511, -1.663, -4.626, 3.879 ], "groove_widths": [ 17.408, 14.694, 14.094, 9.740 ], "simple_Rise": 3.276, "simple_Twist": 27.404, "simple_hRise": 3.156, "simple_hTwist": 27.620 }, { "index": 14, "nt1": "///2/121", "nt2": "///2/343", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.063, -0.130, -0.511, -1.663, -4.626, 3.879 ], "step_params": [ -0.054, -1.343, 3.410, -3.007, 18.256, 30.322 ], "heli_params": [ -4.732, -0.327, 2.261, 31.489, 5.186, 35.408 ], "bp2_params": [ 0.434, 0.299, -0.567, -7.939, 12.019, 11.401 ], "groove_widths": [ 17.875, null, 16.219, null ], "simple_Rise": 3.410, "simple_Twist": 28.018, "simple_hRise": 2.153, "simple_hTwist": 33.473 }, { "index": 15, "nt1": "///2/122", "nt2": "///2/342", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.434, 0.299, -0.567, -7.939, 12.019, 11.401 ], "step_params": [ -0.382, -1.611, 3.285, 2.246, 14.739, 30.641 ], "heli_params": [ -4.864, 0.975, 2.263, 26.044, -3.969, 33.998 ], "bp2_params": [ -0.166, -0.279, -1.050, -6.646, -4.962, 1.075 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.285, "simple_Twist": 33.743, "simple_hRise": 2.371, "simple_hTwist": 36.802 }, { "index": 16, "nt1": "///2/123", "nt2": "///2/341", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.166, -0.279, -1.050, -6.646, -4.962, 1.075 ], "step_params": [ -0.673, -1.047, 3.824, -0.718, 0.981, 45.647 ], "heli_params": [ -1.450, 0.794, 3.811, 1.265, 0.925, 45.663 ], "bp2_params": [ 5.546, -1.327, -0.893, -4.679, -1.098, 2.276 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.824, "simple_Twist": 14.045, "simple_hRise": 3.771, "simple_hTwist": 14.097 }, { "index": 17, "nt1": "///2/124", "nt2": "///2/340", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 8, "num_stems": 3, "strand1": "AAUGGUAACUUGG", "strand2": "GUACAAUCGAGUC", "bp_type": "..||....||.||", "helix_form": "xxAAx...Axx.", "helical_rise": 3.693, "helical_rise_std": 1.461, "helical_radius": 8.517, "helical_radius_std": 2.799, "helical_axis": [ 0.525, 0.373, 0.765 ], "point1": [ 259.481, 148.692, 117.405 ], "point2": [ 282.836, 165.306, 151.436 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///2/141", "nt2": "///2/177", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ -4.024, 3.237, 0.101, 0.762, -0.327, 58.823 ], "step_params": [ -2.576, 1.058, 3.498, -0.106, -0.033, -147.595 ], "heli_params": [ -0.551, -1.342, 3.498, 0.017, -0.055, -147.595 ], "bp2_params": [ -3.709, -1.431, -0.785, 2.878, -0.532, -93.656 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.498, "simple_Twist": -40.604, "simple_hRise": 3.493, "simple_hTwist": -40.604 }, { "index": 2, "nt1": "///2/313", "nt2": "///2/176", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.709, -1.431, -0.785, 2.878, -0.532, -93.656 ], "step_params": [ 2.189, -2.641, 3.313, -3.991, -1.362, 84.339 ], "heli_params": [ -1.933, -1.723, 3.260, -1.014, 2.971, 84.424 ], "bp2_params": [ -0.033, -0.122, -0.445, -1.329, -4.041, 2.172 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.313, "simple_Twist": 63.051, "simple_hRise": 3.234, "simple_hTwist": 63.177 }, { "index": 3, "nt1": "///2/144", "nt2": "///2/175", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.033, -0.122, -0.445, -1.329, -4.041, 2.172 ], "step_params": [ -0.697, -2.180, 3.316, -2.600, 6.541, 25.422 ], "heli_params": [ -6.428, 0.874, 2.736, 14.512, 5.769, 26.363 ], "bp2_params": [ -0.174, -0.109, -0.022, -0.709, 1.688, 1.116 ], "groove_widths": [ 18.154, null, 12.090, null ], "simple_Rise": 3.316, "simple_Twist": 26.372, "simple_hRise": 2.760, "simple_hTwist": 27.279 }, { "index": 4, "nt1": "///2/145", "nt2": "///2/174", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.174, -0.109, -0.022, -0.709, 1.688, 1.116 ], "step_params": [ -1.280, -1.682, 3.268, 3.856, 3.308, 33.854 ], "heli_params": [ -3.355, 2.754, 2.936, 5.641, -6.576, 34.222 ], "bp2_params": [ -0.362, 1.534, -0.206, 6.466, 2.082, -24.956 ], "groove_widths": [ 19.869, 16.699, 13.012, 11.634 ], "simple_Rise": 3.268, "simple_Twist": 34.468, "simple_hRise": 2.943, "simple_hTwist": 34.829 }, { "index": 5, "nt1": "///2/146", "nt2": "///2/173", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.362, 1.534, -0.206, 6.466, 2.082, -24.956 ], "step_params": [ -2.281, -2.075, 7.254, 12.609, 4.147, 102.336 ], "heli_params": [ -1.458, 1.859, 6.962, 2.654, -8.070, 102.953 ], "bp2_params": [ 3.213, -1.809, -1.905, -8.342, 0.355, -93.943 ], "groove_widths": [ 19.424, 17.088, 13.792, 9.785 ], "simple_Rise": 7.254, "simple_Twist": 81.270, "simple_hRise": 6.813, "simple_hTwist": 82.161 }, { "index": 6, "nt1": "///2/148", "nt2": "///2/170", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 3.213, -1.809, -1.905, -8.342, 0.355, -93.943 ], "step_params": [ 0.159, -0.511, 4.934, -25.953, 28.845, 15.710 ], "heli_params": [ -5.159, -4.218, 1.444, 51.139, 46.011, 41.748 ], "bp2_params": [ -3.032, -0.891, -0.168, -5.418, -5.901, -95.309 ], "groove_widths": [ 21.404, 17.135, 13.986, 8.864 ], "simple_Rise": 4.934, "simple_Twist": 51.621, "simple_hRise": 3.792, "simple_hTwist": 63.767 }, { "index": 7, "nt1": "///2/149", "nt2": "///2/169", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.032, -0.891, -0.168, -5.418, -5.901, -95.309 ], "step_params": [ -0.502, -2.544, 4.265, -4.894, 2.807, 45.339 ], "heli_params": [ -3.594, 0.095, 4.139, 3.625, 6.320, 45.670 ], "bp2_params": [ -1.818, 0.645, -0.625, -14.775, 8.047, -79.798 ], "groove_widths": [ 21.393, 17.372, 8.821, 8.772 ], "simple_Rise": 4.265, "simple_Twist": 37.944, "simple_hRise": 4.105, "simple_hTwist": 38.345 }, { "index": 8, "nt1": "///2/150", "nt2": "///2/168", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -1.818, 0.645, -0.625, -14.775, 8.047, -79.798 ], "step_params": [ 3.419, -2.469, 3.553, -9.418, 4.936, 32.883 ], "heli_params": [ -4.844, -7.065, 2.139, 8.449, 16.120, 34.514 ], "bp2_params": [ 0.154, -0.199, -0.574, -3.838, 9.450, -3.203 ], "groove_widths": [ 20.776, 17.231, 10.621, 9.636 ], "simple_Rise": 3.553, "simple_Twist": 22.948, "simple_hRise": 1.498, "simple_hTwist": 25.262 }, { "index": 9, "nt1": "///2/151", "nt2": "///2/167", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.199, -0.574, -3.838, 9.450, -3.203 ], "step_params": [ 0.597, -2.033, 2.963, -3.678, 7.856, 35.946 ], "heli_params": [ -4.091, -1.356, 2.410, 12.507, 5.855, 36.945 ], "bp2_params": [ -0.136, -0.032, -0.175, 6.873, 10.507, -0.388 ], "groove_widths": [ 21.739, 15.780, 12.254, 9.125 ], "simple_Rise": 2.963, "simple_Twist": 37.198, "simple_hRise": 2.432, "simple_hTwist": 38.162 }, { "index": 10, "nt1": "///2/152", "nt2": "///2/166", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.136, -0.032, -0.175, 6.873, 10.507, -0.388 ], "step_params": [ -0.530, -2.922, 5.109, 49.897, 18.028, 90.138 ], "heli_params": [ -2.313, 1.525, 4.060, 11.957, -33.093, 101.618 ], "bp2_params": [ 1.270, 2.982, 1.084, -44.655, 4.666, -74.915 ], "groove_widths": [ 21.194, null, 16.413, null ], "simple_Rise": 5.109, "simple_Twist": 35.415, "simple_hRise": 1.758, "simple_hTwist": 63.067 }, { "index": 11, "nt1": "///2/154", "nt2": "///2/165", "bp": "U+G", "name": "~Hoogsteen", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ 1.270, 2.982, 1.084, -44.655, 4.666, -74.915 ], "step_params": [ 2.095, -0.178, 6.167, -21.278, 32.013, -21.203 ], "heli_params": [ -6.499, -1.665, 4.185, -51.783, -34.418, -43.705 ], "bp2_params": [ -2.214, -0.365, -0.088, -10.705, -2.897, -0.803 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.167, "simple_Twist": 45.013, "simple_hRise": 4.016, "simple_hTwist": 58.535 }, { "index": 12, "nt1": "///2/155", "nt2": "///2/163", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.214, -0.365, -0.088, -10.705, -2.897, -0.803 ], "step_params": [ -2.347, -0.962, 2.392, 3.288, 1.702, 35.499 ], "heli_params": [ -1.741, 4.159, 2.126, 2.782, -5.375, 35.686 ], "bp2_params": [ 0.923, 0.898, -0.388, 39.133, -5.970, -0.918 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.392, "simple_Twist": 19.389, "simple_hRise": 1.881, "simple_hTwist": 19.736 }, { "index": 13, "nt1": "///2/156", "nt2": "///2/162", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 9, "num_stems": 3, "strand1": "CGGCGCUACCCCCUU", "strand2": "GCUGCGUGGGGGGGC", "bp_type": "||||||..|||||..", "helix_form": "Zx.A..x..AAA..", "helical_rise": 3.440, "helical_rise_std": 1.165, "helical_radius": 9.168, "helical_radius_std": 2.760, "helical_axis": [ -0.336, 0.016, -0.942 ], "point1": [ 245.480, 144.084, 107.267 ], "point2": [ 229.364, 144.848, 62.065 ], "num_pairs": 15, "pairs": [ { "index": 1, "nt1": "///2/182", "nt2": "///2/130", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.171, -0.202, -0.679, 2.015, 0.326, -1.573 ], "step_params": [ -0.217, 4.716, 3.398, 8.549, 1.115, -16.937 ], "heli_params": [ -14.878, 3.818, 2.855, -3.505, 26.879, -18.991 ], "bp2_params": [ -0.192, -0.139, 0.260, -4.490, 0.826, 2.488 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.398, "simple_Twist": -18.421, "simple_hRise": 2.916, "simple_hTwist": -20.323 }, { "index": 2, "nt1": "///2/183", "nt2": "///2/129", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.192, -0.139, 0.260, -4.490, 0.826, 2.488 ], "step_params": [ 0.555, -3.834, 7.591, 11.678, 20.109, -14.657 ], "heli_params": [ -6.143, 9.432, 6.643, -50.332, 29.230, -27.434 ], "bp2_params": [ -1.599, -0.825, -1.734, -15.833, -2.288, -5.306 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 7.591, "simple_Twist": -5.164, "simple_hRise": 4.621, "simple_hTwist": -23.813 }, { "index": 3, "nt1": "///2/185", "nt2": "///2/214", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.599, -0.825, -1.734, -15.833, -2.288, -5.306 ], "step_params": [ -0.136, -1.168, 3.435, -9.579, 5.601, 41.548 ], "heli_params": [ -2.171, -0.798, 3.212, 7.731, 13.222, 42.941 ], "bp2_params": [ 0.174, -0.200, -0.599, -9.975, 6.782, -0.254 ], "groove_widths": [ 17.509, null, 21.180, null ], "simple_Rise": 3.435, "simple_Twist": 31.895, "simple_hRise": 3.102, "simple_hTwist": 33.723 }, { "index": 4, "nt1": "///2/186", "nt2": "///2/213", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.174, -0.200, -0.599, -9.975, 6.782, -0.254 ], "step_params": [ 0.543, -1.571, 3.051, -2.992, 7.601, 30.641 ], "heli_params": [ -4.095, -1.473, 2.535, 14.071, 5.540, 31.686 ], "bp2_params": [ -0.159, -0.123, 0.229, -5.587, 12.007, 2.064 ], "groove_widths": [ 18.061, 15.439, 15.651, 13.388 ], "simple_Rise": 3.051, "simple_Twist": 32.702, "simple_hRise": 2.573, "simple_hTwist": 33.680 }, { "index": 5, "nt1": "///2/187", "nt2": "///2/212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.123, 0.229, -5.587, 12.007, 2.064 ], "step_params": [ 0.749, -2.249, 3.040, 0.873, 9.533, 40.123 ], "heli_params": [ -4.077, -0.984, 2.480, 13.660, -1.251, 41.203 ], "bp2_params": [ 0.199, -0.142, 0.073, 6.109, 16.071, 2.943 ], "groove_widths": [ 20.064, 15.980, 14.530, 9.403 ], "simple_Rise": 3.040, "simple_Twist": 37.840, "simple_hRise": 2.440, "simple_hTwist": 38.989 }, { "index": 6, "nt1": "///2/188", "nt2": "///2/211", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.199, -0.142, 0.073, 6.109, 16.071, 2.943 ], "step_params": [ -1.884, -2.197, 3.601, 16.625, 17.852, 43.549 ], "heli_params": [ -3.793, 3.339, 1.831, 22.122, -20.601, 49.625 ], "bp2_params": [ 3.013, -0.922, -1.354, -8.664, 6.294, -17.139 ], "groove_widths": [ 20.443, 14.843, 12.229, 11.446 ], "simple_Rise": 3.601, "simple_Twist": 28.625, "simple_hRise": 0.929, "simple_hTwist": 37.443 }, { "index": 7, "nt1": "///2/189", "nt2": "///2/210", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 3.013, -0.922, -1.354, -8.664, 6.294, -17.139 ], "step_params": [ 1.773, -2.143, 6.571, -7.061, 2.090, 16.318 ], "heli_params": [ -9.157, -13.361, 5.053, 6.921, 23.386, 17.892 ], "bp2_params": [ -7.677, -6.550, 0.524, -2.076, -32.533, -24.626 ], "groove_widths": [ 19.469, 13.883, 13.445, 13.354 ], "simple_Rise": 6.571, "simple_Twist": 88.920, "simple_hRise": 6.406, "simple_hTwist": 89.161 }, { "index": 8, "nt1": "///2/191", "nt2": "///2/208", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -7.677, -6.550, 0.524, -2.076, -32.533, -24.626 ], "step_params": [ 1.492, -1.194, 3.988, 11.412, 2.059, 64.859 ], "heli_params": [ -1.204, -0.792, 4.136, 1.904, -10.552, 65.776 ], "bp2_params": [ -0.880, -0.210, -0.503, -5.371, -21.191, -10.074 ], "groove_widths": [ 20.072, 15.532, 15.959, 15.541 ], "simple_Rise": 3.988, "simple_Twist": 12.528, "simple_hRise": 3.786, "simple_hTwist": 17.055 }, { "index": 9, "nt1": "///2/192", "nt2": "///2/207", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.880, -0.210, -0.503, -5.371, -21.191, -10.074 ], "step_params": [ 1.449, -1.912, 3.536, 1.459, 5.973, 31.628 ], "heli_params": [ -4.553, -2.343, 3.193, 10.831, -2.645, 32.205 ], "bp2_params": [ 0.173, -0.192, -0.419, -3.829, -1.397, -0.876 ], "groove_widths": [ 18.450, 15.475, 16.649, 16.202 ], "simple_Rise": 3.536, "simple_Twist": 26.390, "simple_hRise": 3.110, "simple_hTwist": 27.085 }, { "index": 10, "nt1": "///2/193", "nt2": "///2/206", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.173, -0.192, -0.419, -3.829, -1.397, -0.876 ], "step_params": [ -0.023, -1.638, 3.494, -3.772, 2.962, 33.088 ], "heli_params": [ -3.361, -0.613, 3.321, 5.167, 6.580, 33.424 ], "bp2_params": [ 0.172, -0.179, -0.566, -0.986, -3.038, 1.295 ], "groove_widths": [ 17.071, 15.121, 21.858, 20.829 ], "simple_Rise": 3.494, "simple_Twist": 33.019, "simple_hRise": 3.320, "simple_hTwist": 33.356 }, { "index": 11, "nt1": "///2/194", "nt2": "///2/205", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.172, -0.179, -0.566, -0.986, -3.038, 1.295 ], "step_params": [ 0.186, -2.340, 3.347, -5.599, 9.447, 32.323 ], "heli_params": [ -5.376, -1.138, 2.517, 16.390, 9.715, 34.090 ], "bp2_params": [ 0.182, -0.118, 0.084, -4.795, 14.907, 2.110 ], "groove_widths": [ 17.705, 15.045, 20.096, 19.512 ], "simple_Rise": 3.347, "simple_Twist": 32.153, "simple_hRise": 2.512, "simple_hTwist": 33.930 }, { "index": 12, "nt1": "///2/195", "nt2": "///2/204", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.182, -0.118, 0.084, -4.795, 14.907, 2.110 ], "step_params": [ -0.461, -2.554, 3.082, -0.229, 9.529, 31.518 ], "heli_params": [ -5.864, 0.782, 2.238, 17.060, 0.410, 32.893 ], "bp2_params": [ 0.280, -0.143, 0.121, -2.150, 25.759, 5.035 ], "groove_widths": [ 18.269, null, 15.583, null ], "simple_Rise": 3.082, "simple_Twist": 31.281, "simple_hRise": 2.231, "simple_hTwist": 32.666 }, { "index": 13, "nt1": "///2/196", "nt2": "///2/203", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.280, -0.143, 0.121, -2.150, 25.759, 5.035 ], "step_params": [ -5.228, -1.824, 2.535, 3.636, 14.950, 26.514 ], "heli_params": [ -5.041, 10.296, 0.718, 29.636, -7.208, 30.586 ], "bp2_params": [ -1.909, 1.499, 0.417, 17.369, 46.241, -58.209 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.535, "simple_Twist": 34.949, "simple_hRise": 1.156, "simple_hTwist": 38.089 }, { "index": 14, "nt1": "///2/197", "nt2": "///2/202", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.909, 1.499, 0.417, 17.369, 46.241, -58.209 ], "step_params": [ 0.198, -3.280, 3.897, 10.387, 15.237, 72.412 ], "heli_params": [ -3.241, 0.197, 3.252, 12.696, -8.655, 74.411 ], "bp2_params": [ 6.876, -4.236, -1.869, 17.599, -13.763, -64.802 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.897, "simple_Twist": 23.506, "simple_hRise": 1.502, "simple_hTwist": 29.796 }, { "index": 15, "nt1": "///2/198", "nt2": "///2/201", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M" } ] }, { "index": 10, "num_stems": 1, "strand1": "CAUUUAUCAUG", "strand2": "GCCAAUAGAUC", "bp_type": "|..|||||..|", "helix_form": "x.....A.x.", "helical_rise": 2.224, "helical_rise_std": 1.026, "helical_radius": 9.953, "helical_radius_std": 3.611, "helical_axis": [ -0.954, 0.215, 0.210 ], "point1": [ 240.937, 153.939, 110.006 ], "point2": [ 220.107, 158.629, 114.598 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///2/216", "nt2": "///2/309", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.904, 0.847, -2.376, 41.410, 1.253, 14.927 ], "step_params": [ 3.924, -1.964, 3.073, -38.259, 26.126, 47.179 ], "heli_params": [ -2.315, -4.363, -0.627, 26.456, 38.743, 65.179 ], "bp2_params": [ -4.337, 0.155, 0.292, 1.958, -5.137, 34.970 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.073, "simple_Twist": 68.018, "simple_hRise": 0.465, "simple_hTwist": 80.697 }, { "index": 2, "nt1": "///2/217", "nt2": "///2/304", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -4.337, 0.155, 0.292, 1.958, -5.137, 34.970 ], "step_params": [ -2.324, -1.375, 3.709, -3.342, 10.460, 41.806 ], "heli_params": [ -3.013, 2.794, 3.452, 14.363, 4.589, 43.162 ], "bp2_params": [ -1.830, -1.777, -0.905, -11.711, -13.875, 3.470 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.709, "simple_Twist": 27.480, "simple_hRise": 3.235, "simple_hTwist": 29.554 }, { "index": 3, "nt1": "///2/218", "nt2": "///2/303", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.830, -1.777, -0.905, -11.711, -13.875, 3.470 ], "step_params": [ -1.046, -1.301, 3.711, -4.604, 1.643, 39.000 ], "heli_params": [ -2.159, 0.929, 3.750, 2.450, 6.863, 39.293 ], "bp2_params": [ -0.117, -0.352, -1.129, -14.435, 1.151, -0.701 ], "groove_widths": [ 17.472, null, 18.767, null ], "simple_Rise": 3.711, "simple_Twist": 28.135, "simple_hRise": 3.750, "simple_hTwist": 28.548 }, { "index": 4, "nt1": "///2/219", "nt2": "///2/302", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.117, -0.352, -1.129, -14.435, 1.151, -0.701 ], "step_params": [ -0.992, -1.486, 3.708, -7.735, 5.249, 19.277 ], "heli_params": [ -6.425, -0.899, 3.338, 14.614, 21.534, 21.405 ], "bp2_params": [ -0.070, -0.094, -0.457, -9.788, 6.451, 2.941 ], "groove_widths": [ 17.919, 16.639, 18.222, 13.026 ], "simple_Rise": 3.708, "simple_Twist": 19.209, "simple_hRise": 3.335, "simple_hTwist": 21.343 }, { "index": 5, "nt1": "///2/220", "nt2": "///2/301", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.070, -0.094, -0.457, -9.788, 6.451, 2.941 ], "step_params": [ 0.699, -1.372, 3.033, -5.318, 17.973, 33.901 ], "heli_params": [ -3.889, -1.595, 1.961, 28.301, 8.374, 38.604 ], "bp2_params": [ 0.815, 0.321, 0.032, -5.391, -8.423, 13.153 ], "groove_widths": [ 18.331, 16.610, 18.250, 14.213 ], "simple_Rise": 3.033, "simple_Twist": 28.850, "simple_hRise": 1.753, "simple_hTwist": 34.296 }, { "index": 6, "nt1": "///2/221", "nt2": "///2/300", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.815, 0.321, 0.032, -5.391, -8.423, 13.153 ], "step_params": [ -0.537, -2.062, 3.412, -1.590, 4.789, 26.562 ], "heli_params": [ -5.621, 0.749, 3.026, 10.304, 3.421, 27.029 ], "bp2_params": [ -0.014, -0.124, -0.358, -5.724, 3.010, 4.623 ], "groove_widths": [ 17.593, 16.077, 17.277, 12.465 ], "simple_Rise": 3.412, "simple_Twist": 31.210, "simple_hRise": 3.092, "simple_hTwist": 31.605 }, { "index": 7, "nt1": "///2/222", "nt2": "///2/299", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.014, -0.124, -0.358, -5.724, 3.010, 4.623 ], "step_params": [ -0.348, -1.855, 3.081, -2.084, 8.255, 34.279 ], "heli_params": [ -4.137, 0.302, 2.595, 13.744, 3.470, 35.290 ], "bp2_params": [ 0.163, -0.111, -0.001, -3.750, 3.798, 0.342 ], "groove_widths": [ 17.285, 14.366, 17.521, 14.491 ], "simple_Rise": 3.081, "simple_Twist": 33.223, "simple_hRise": 2.576, "simple_hTwist": 34.267 }, { "index": 8, "nt1": "///2/223", "nt2": "///2/298", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.163, -0.111, -0.001, -3.750, 3.798, 0.342 ], "step_params": [ -0.609, -2.282, 3.624, 8.004, 5.291, 31.679 ], "heli_params": [ -4.932, 2.467, 2.977, 9.426, -14.258, 33.064 ], "bp2_params": [ 1.070, 1.726, -1.181, -15.458, 12.386, -7.199 ], "groove_widths": [ 17.144, null, 16.132, null ], "simple_Rise": 3.624, "simple_Twist": 28.187, "simple_hRise": 2.880, "simple_hTwist": 29.744 }, { "index": 9, "nt1": "///2/224", "nt2": "///2/297", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.070, 1.726, -1.181, -15.458, 12.386, -7.199 ], "step_params": [ -4.694, -3.459, 3.205, 11.262, -7.015, 44.062 ], "heli_params": [ -3.893, 6.884, 2.490, -9.108, -14.622, 45.921 ], "bp2_params": [ -2.654, -1.800, -0.588, 11.359, -5.895, -25.639 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.205, "simple_Twist": 64.105, "simple_hRise": 2.761, "simple_hTwist": 65.320 }, { "index": 10, "nt1": "///2/287", "nt2": "///2/296", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.654, -1.800, -0.588, 11.359, -5.895, -25.639 ], "step_params": [ 1.663, -1.667, 3.551, 0.864, 21.493, 47.342 ], "heli_params": [ -3.357, -1.847, 2.641, 25.300, -1.017, 51.743 ], "bp2_params": [ -0.301, 0.568, -0.914, 12.321, 25.040, 3.203 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.551, "simple_Twist": 32.973, "simple_hRise": 2.151, "simple_hTwist": 39.205 }, { "index": 11, "nt1": "///2/288", "nt2": "///2/295", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 11, "num_stems": 2, "strand1": "GUCACGCC", "strand2": "CAGGGCGG", "bp_type": "|||.|||.", "helix_form": "xAx.AA.", "helical_rise": 3.006, "helical_rise_std": 1.543, "helical_radius": 11.312, "helical_radius_std": 2.935, "helical_axis": [ 0.874, -0.452, -0.176 ], "point1": [ 247.842, 135.055, 129.196 ], "point2": [ 265.870, 125.731, 125.561 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///2/312", "nt2": "///2/337", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.188, -0.163, 0.657, 1.807, 2.238, 1.797 ], "step_params": [ -1.628, -2.311, 3.347, 3.648, 4.572, 45.768 ], "heli_params": [ -3.330, 2.381, 2.984, 5.850, -4.668, 46.121 ], "bp2_params": [ -0.019, -0.177, 0.587, 7.923, 5.166, 5.393 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.347, "simple_Twist": 44.637, "simple_hRise": 2.973, "simple_hTwist": 44.999 }, { "index": 2, "nt1": "///2/314", "nt2": "///2/336", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.019, -0.177, 0.587, 7.923, 5.166, 5.393 ], "step_params": [ -0.650, -2.154, 3.243, 6.524, 3.362, 33.725 ], "heli_params": [ -4.125, 2.050, 2.850, 5.712, -11.082, 34.491 ], "bp2_params": [ 0.176, -0.140, -0.172, 1.552, -1.379, 0.818 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.243, "simple_Twist": 32.693, "simple_hRise": 2.835, "simple_hTwist": 33.485 }, { "index": 3, "nt1": "///2/315", "nt2": "///2/335", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.176, -0.140, -0.172, 1.552, -1.379, 0.818 ], "step_params": [ -2.890, -2.719, 9.171, 12.203, 14.950, 72.672 ], "heli_params": [ -3.473, 3.387, 8.068, 12.403, -10.124, 74.848 ], "bp2_params": [ 1.957, 0.445, 1.446, 2.202, 2.290, 26.644 ], "groove_widths": [ 24.309, null, 17.106, null ], "simple_Rise": 9.171, "simple_Twist": 62.395, "simple_hRise": 7.790, "simple_hTwist": 65.023 }, { "index": 4, "nt1": "///2/318", "nt2": "///2/333", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.957, 0.445, 1.446, 2.202, 2.290, 26.644 ], "step_params": [ 1.446, -3.102, 4.474, 5.040, 2.470, 4.197 ], "heli_params": [ -38.183, 14.295, 2.627, 23.427, -47.809, 7.007 ], "bp2_params": [ 0.235, -0.175, 0.619, -0.072, 2.857, 3.701 ], "groove_widths": [ 23.514, 18.178, 19.038, 18.969 ], "simple_Rise": 4.474, "simple_Twist": 14.316, "simple_hRise": 4.144, "simple_hTwist": 15.371 }, { "index": 5, "nt1": "///2/319", "nt2": "///2/332", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.235, -0.175, 0.619, -0.072, 2.857, 3.701 ], "step_params": [ 0.175, -1.760, 3.454, 2.679, -0.471, 23.209 ], "heli_params": [ -4.175, 0.541, 3.486, -1.166, -6.631, 23.365 ], "bp2_params": [ -0.177, -0.131, 0.169, 3.870, 0.546, 0.414 ], "groove_widths": [ 19.797, null, 24.644, null ], "simple_Rise": 3.454, "simple_Twist": 25.496, "simple_hRise": 3.485, "simple_hTwist": 25.638 }, { "index": 6, "nt1": "///2/320", "nt2": "///2/331", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.177, -0.131, 0.169, 3.870, 0.546, 0.414 ], "step_params": [ -1.415, -1.974, 3.337, 1.486, 0.055, 37.474 ], "heli_params": [ -3.078, 2.398, 3.278, 0.085, -2.311, 37.503 ], "bp2_params": [ 0.541, -0.315, -0.417, 3.048, -2.118, -17.439 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.337, "simple_Twist": 33.537, "simple_hRise": 3.270, "simple_hTwist": 33.569 }, { "index": 7, "nt1": "///2/321", "nt2": "///2/330", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.541, -0.315, -0.417, 3.048, -2.118, -17.439 ], "step_params": [ 3.109, -1.150, 3.603, -0.372, 1.045, 37.297 ], "heli_params": [ -1.949, -4.913, 3.540, 1.634, 0.582, 37.313 ], "bp2_params": [ 3.689, -0.071, -0.365, 4.687, -3.007, 40.007 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.603, "simple_Twist": 16.573, "simple_hRise": 3.454, "simple_hTwist": 16.610 }, { "index": 8, "nt1": "///2/322", "nt2": "///2/329", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 12, "num_stems": 1, "strand1": "ACU", "strand2": "UGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.596, "helical_rise_std": 0.155, "helical_radius": 9.852, "helical_radius_std": 1.645, "helical_axis": [ 0.839, 0.533, -0.106 ], "point1": [ 208.658, 199.764, 134.543 ], "point2": [ 212.962, 202.500, 133.997 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/364", "nt2": "///2/396", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.010, -0.148, 0.214, -5.045, 8.812, 8.695 ], "step_params": [ -0.074, -2.281, 3.278, -1.237, 4.074, 31.557 ], "heli_params": [ -4.871, -0.081, 2.969, 7.449, 2.261, 31.835 ], "bp2_params": [ 0.274, -0.170, 0.596, -4.003, 13.380, 5.723 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.278, "simple_Twist": 29.936, "simple_hRise": 2.950, "simple_hTwist": 30.230 }, { "index": 2, "nt1": "///2/365", "nt2": "///2/395", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.274, -0.170, 0.596, -4.003, 13.380, 5.723 ], "step_params": [ 0.165, -2.290, 3.235, 1.551, 6.297, 42.330 ], "heli_params": [ -3.730, -0.080, 2.885, 8.659, -2.133, 42.801 ], "bp2_params": [ 1.903, -0.607, 0.852, -2.685, 23.132, 0.564 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.235, "simple_Twist": 33.760, "simple_hRise": 2.780, "simple_hTwist": 34.359 }, { "index": 3, "nt1": "///2/366", "nt2": "///2/394", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 13, "num_stems": 1, "strand1": "AUGGUAGU", "strand2": "UACCAUCC", "bp_type": "|||||||.", "helix_form": ".A.AAAA", "helical_rise": 2.494, "helical_rise_std": 0.485, "helical_radius": 9.041, "helical_radius_std": 0.807, "helical_axis": [ 0.275, -0.961, -0.029 ], "point1": [ 223.030, 197.679, 124.434 ], "point2": [ 227.774, 181.076, 123.927 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///2/371", "nt2": "///2/393", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.947, 0.843, 0.080, -12.079, 3.339, 9.396 ], "step_params": [ -1.117, -1.312, 3.320, -4.863, 3.890, 39.559 ], "heli_params": [ -2.370, 1.066, 3.290, 5.704, 7.131, 40.027 ], "bp2_params": [ 0.004, -0.098, 0.212, 1.985, 5.044, 5.061 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.320, "simple_Twist": 29.673, "simple_hRise": 3.263, "simple_hTwist": 30.305 }, { "index": 2, "nt1": "///2/372", "nt2": "///2/392", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.004, -0.098, 0.212, 1.985, 5.044, 5.061 ], "step_params": [ 0.179, -1.532, 3.129, 6.355, 28.525, 33.294 ], "heli_params": [ -4.224, 0.248, 1.452, 41.291, -9.199, 44.026 ], "bp2_params": [ -0.208, -0.161, -0.710, -8.066, -9.210, 2.557 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.129, "simple_Twist": 34.457, "simple_hRise": 1.508, "simple_hTwist": 44.892 }, { "index": 3, "nt1": "///2/373", "nt2": "///2/391", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.208, -0.161, -0.710, -8.066, -9.210, 2.557 ], "step_params": [ -1.484, -2.081, 3.734, -6.687, 5.254, 27.633 ], "heli_params": [ -5.500, 1.284, 3.540, 10.684, 13.598, 28.888 ], "bp2_params": [ -0.097, -0.168, -0.955, -15.462, 4.090, -2.348 ], "groove_widths": [ 17.844, null, 17.551, null ], "simple_Rise": 3.734, "simple_Twist": 27.093, "simple_hRise": 3.533, "simple_hTwist": 28.373 }, { "index": 4, "nt1": "///2/374", "nt2": "///2/390", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.097, -0.168, -0.955, -15.462, 4.090, -2.348 ], "step_params": [ -0.324, -1.512, 3.314, -8.082, 6.711, 30.740 ], "heli_params": [ -3.862, -0.811, 2.918, 12.219, 14.717, 32.444 ], "bp2_params": [ -0.069, -0.068, -0.097, -7.542, 14.058, -0.640 ], "groove_widths": [ 18.358, 16.622, 16.043, 11.083 ], "simple_Rise": 3.314, "simple_Twist": 30.695, "simple_hRise": 2.917, "simple_hTwist": 32.402 }, { "index": 5, "nt1": "///2/375", "nt2": "///2/389", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.069, -0.068, -0.097, -7.542, 14.058, -0.640 ], "step_params": [ 0.322, -1.073, 3.111, 1.947, 27.400, 37.421 ], "heli_params": [ -3.402, -0.266, 1.946, 37.210, -2.644, 46.127 ], "bp2_params": [ 0.051, -0.062, -0.371, -9.784, -9.904, -0.371 ], "groove_widths": [ 18.452, null, 14.624, null ], "simple_Rise": 3.111, "simple_Twist": 36.312, "simple_hRise": 1.905, "simple_hTwist": 45.250 }, { "index": 6, "nt1": "///2/376", "nt2": "///2/388", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.051, -0.062, -0.371, -9.784, -9.904, -0.371 ], "step_params": [ -0.024, -1.755, 3.579, -2.274, 0.366, 25.586 ], "heli_params": [ -4.060, -0.644, 3.542, 0.825, 5.121, 25.688 ], "bp2_params": [ -0.209, -0.184, -0.660, -9.527, -7.986, 0.927 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.579, "simple_Twist": 26.970, "simple_hRise": 3.545, "simple_hTwist": 27.066 }, { "index": 7, "nt1": "///2/377", "nt2": "///2/387", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.209, -0.184, -0.660, -9.527, -7.986, 0.927 ], "step_params": [ -1.028, -1.548, 3.652, -6.989, 0.938, 35.622 ], "heli_params": [ -2.635, 0.534, 3.740, 1.515, 11.288, 36.291 ], "bp2_params": [ -1.162, -0.376, -0.325, -18.017, -2.246, -11.660 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.652, "simple_Twist": 40.973, "simple_hRise": 3.735, "simple_hTwist": 41.550 }, { "index": 8, "nt1": "///2/378", "nt2": "///2/386", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 14, "num_stems": 1, "strand1": "GAAUUG", "strand2": "CUUGGG", "bp_type": "||||..", "helix_form": "AA.x.", "helical_rise": 3.518, "helical_rise_std": 0.668, "helical_radius": 10.096, "helical_radius_std": 4.068, "helical_axis": [ -0.648, -0.186, 0.739 ], "point1": [ 210.246, 177.081, 163.632 ], "point2": [ 198.836, 173.798, 176.641 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/413", "nt2": "///2/424", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.186, -0.192, -0.700, -6.625, -1.716, -0.008 ], "step_params": [ -0.441, -1.795, 3.510, -1.745, 1.448, 34.555 ], "heli_params": [ -3.253, 0.456, 3.452, 2.434, 2.933, 34.627 ], "bp2_params": [ 0.078, -0.125, -0.651, -8.757, 3.891, 1.110 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.510, "simple_Twist": 33.313, "simple_hRise": 3.449, "simple_hTwist": 33.388 }, { "index": 2, "nt1": "///2/414", "nt2": "///2/423", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.078, -0.125, -0.651, -8.757, 3.891, 1.110 ], "step_params": [ -0.363, -1.633, 3.289, -0.890, 3.622, 30.434 ], "heli_params": [ -3.788, 0.516, 3.088, 6.867, 1.688, 30.656 ], "bp2_params": [ 0.119, -0.108, -0.406, -2.673, 10.274, -1.438 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.289, "simple_Twist": 30.339, "simple_hRise": 3.087, "simple_hTwist": 30.562 }, { "index": 3, "nt1": "///2/415", "nt2": "///2/422", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.119, -0.108, -0.406, -2.673, 10.274, -1.438 ], "step_params": [ 1.335, -1.111, 3.264, 0.901, 5.053, 41.878 ], "heli_params": [ -2.055, -1.764, 3.142, 7.038, -1.255, 42.177 ], "bp2_params": [ 3.148, -0.465, -0.133, 9.923, 13.983, 6.133 ], "groove_widths": [ 23.826, null, 17.436, null ], "simple_Rise": 3.264, "simple_Twist": 24.803, "simple_hRise": 3.026, "simple_hTwist": 25.321 }, { "index": 4, "nt1": "///2/416", "nt2": "///2/421", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 3.148, -0.465, -0.133, 9.923, 13.983, 6.133 ], "step_params": [ -7.827, 0.570, 4.678, -25.183, -5.779, 103.798 ], "heli_params": [ 0.486, 4.337, 5.903, -3.635, 15.839, 106.055 ], "bp2_params": [ -4.058, 1.407, -0.830, 5.744, 36.287, 111.746 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.678, "simple_Twist": 171.929, "simple_hRise": 4.795, "simple_hTwist": 172.134 }, { "index": 5, "nt1": "///2/661", "nt2": "///2/420", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "bp1_params": [ -4.058, 1.407, -0.830, 5.744, 36.287, 111.746 ], "step_params": [ 0.397, 1.485, 2.855, 13.499, -2.725, 128.906 ], "heli_params": [ 0.840, -0.131, 2.856, -1.509, -7.473, 129.300 ], "bp2_params": [ -1.405, -2.742, 1.153, -20.645, -3.715, 101.650 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.855, "simple_Twist": -45.501, "simple_hRise": 2.719, "simple_hTwist": -47.433 }, { "index": 6, "nt1": "///2/662", "nt2": "///2/419", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cHW", "DSSR": "cM+W" } ] }, { "index": 15, "num_stems": 4, "strand1": "AGCGUAUAUUACUGGAAGGAAUUU", "strand2": "UCGUAUACGAUGACCGUCCUAAGA", "bp_type": ".||||||..||||||.||||.|..", "helix_form": "xA..A.....x.AAx...Axx.x", "helical_rise": 2.529, "helical_rise_std": 1.544, "helical_radius": 10.566, "helical_radius_std": 4.606, "helical_axis": [ -0.701, 0.709, -0.079 ], "point1": [ 227.341, 166.237, 194.228 ], "point2": [ 186.509, 207.504, 189.626 ], "num_pairs": 24, "pairs": [ { "index": 1, "nt1": "///2/516", "nt2": "///2/31", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.312, -2.647, -0.866, 9.144, 7.384, -89.691 ], "step_params": [ 0.874, -3.009, 3.321, -20.222, 7.964, 89.930 ], "heli_params": [ -2.241, -0.984, 2.908, 5.569, 14.141, 91.969 ], "bp2_params": [ -0.171, -0.108, -0.220, -6.207, 14.340, 2.618 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.321, "simple_Twist": 64.199, "simple_hRise": 2.629, "simple_hTwist": 67.404 }, { "index": 2, "nt1": "///2/644", "nt2": "///2/30", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.171, -0.108, -0.220, -6.207, 14.340, 2.618 ], "step_params": [ -0.224, -1.837, 3.245, -2.342, 5.999, 31.321 ], "heli_params": [ -4.362, 0.007, 2.861, 10.967, 4.281, 31.960 ], "bp2_params": [ 0.230, -0.151, 0.168, 0.033, 12.574, 3.092 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.245, "simple_Twist": 28.707, "simple_hRise": 2.820, "simple_hTwist": 29.406 }, { "index": 3, "nt1": "///2/645", "nt2": "///2/29", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.230, -0.151, 0.168, 0.033, 12.574, 3.092 ], "step_params": [ -0.589, -2.059, 3.413, 4.469, 10.021, 25.192 ], "heli_params": [ -6.595, 2.247, 2.304, 21.710, -9.682, 27.442 ], "bp2_params": [ -1.677, -0.126, -0.724, -10.726, -0.439, -4.804 ], "groove_widths": [ 17.734, null, 18.215, null ], "simple_Rise": 3.413, "simple_Twist": 35.229, "simple_hRise": 2.656, "simple_hTwist": 36.846 }, { "index": 4, "nt1": "///2/646", "nt2": "///2/28", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.677, -0.126, -0.724, -10.726, -0.439, -4.804 ], "step_params": [ -0.031, -1.438, 3.085, -2.829, 2.083, 34.682 ], "heli_params": [ -2.696, -0.348, 2.989, 3.482, 4.731, 34.854 ], "bp2_params": [ -0.653, 0.323, -0.617, 0.271, 6.585, 3.332 ], "groove_widths": [ 17.775, 16.162, 18.928, 18.538 ], "simple_Rise": 3.085, "simple_Twist": 29.409, "simple_hRise": 2.968, "simple_hTwist": 29.614 }, { "index": 5, "nt1": "///2/647", "nt2": "///2/27", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.653, 0.323, -0.617, 0.271, 6.585, 3.332 ], "step_params": [ -0.831, -0.945, 3.564, 3.634, 9.804, 32.935 ], "heli_params": [ -3.170, 1.986, 3.060, 16.773, -6.217, 34.511 ], "bp2_params": [ 0.082, -0.247, -1.033, 4.079, -3.885, -2.144 ], "groove_widths": [ 18.229, 16.531, 16.403, 12.901 ], "simple_Rise": 3.564, "simple_Twist": 28.959, "simple_hRise": 2.970, "simple_hTwist": 30.751 }, { "index": 6, "nt1": "///2/648", "nt2": "///2/26", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.082, -0.247, -1.033, 4.079, -3.885, -2.144 ], "step_params": [ 1.559, -0.804, 3.246, 4.426, 2.022, 31.880 ], "heli_params": [ -1.814, -2.006, 3.370, 3.655, -8.000, 32.240 ], "bp2_params": [ 0.413, 0.281, -0.867, 14.997, -10.602, 7.062 ], "groove_widths": [ 18.535, 16.305, 15.674, 10.080 ], "simple_Rise": 3.246, "simple_Twist": 30.563, "simple_hRise": 3.374, "simple_hTwist": 30.939 }, { "index": 7, "nt1": "///2/649", "nt2": "///2/25", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.413, 0.281, -0.867, 14.997, -10.602, 7.062 ], "step_params": [ 0.305, -1.146, 3.078, -7.876, 41.994, 27.209 ], "heli_params": [ -3.701, -0.800, 0.718, 57.969, 10.873, 50.310 ], "bp2_params": [ -1.525, 0.444, -0.228, -6.097, -14.788, 23.284 ], "groove_widths": [ 17.904, 15.295, 15.576, 11.057 ], "simple_Rise": 3.078, "simple_Twist": 37.551, "simple_hRise": 1.236, "simple_hTwist": 56.296 }, { "index": 8, "nt1": "///2/650", "nt2": "///2/24", "bp": "A-C", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.525, 0.444, -0.228, -6.097, -14.788, 23.284 ], "step_params": [ -1.286, -0.486, 3.717, -1.559, -0.031, 52.659 ], "heli_params": [ -0.545, 1.334, 3.751, -0.035, 1.757, 52.680 ], "bp2_params": [ 3.746, -1.169, -0.144, -6.219, -4.128, -4.053 ], "groove_widths": [ 17.072, 15.104, 17.081, 11.979 ], "simple_Rise": 3.717, "simple_Twist": 23.375, "simple_hRise": 3.794, "simple_hTwist": 23.427 }, { "index": 9, "nt1": "///2/651", "nt2": "///2/23", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 3.746, -1.169, -0.144, -6.219, -4.128, -4.053 ], "step_params": [ -0.462, -2.280, 2.945, 3.687, 6.842, 10.180 ], "heli_params": [ -15.471, 4.898, 0.996, 32.958, -17.760, 12.802 ], "bp2_params": [ -0.027, -0.094, -0.331, 4.721, -4.190, 3.588 ], "groove_widths": [ 20.402, 16.356, 17.762, 12.539 ], "simple_Rise": 2.945, "simple_Twist": 31.213, "simple_hRise": 2.337, "simple_hTwist": 32.143 }, { "index": 10, "nt1": "///2/652", "nt2": "///2/22", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.027, -0.094, -0.331, 4.721, -4.190, 3.588 ], "step_params": [ -0.284, -1.293, 3.949, 4.267, 22.205, 29.209 ], "heli_params": [ -5.329, 1.080, 2.360, 37.720, -7.248, 36.787 ], "bp2_params": [ -0.443, 0.379, -1.793, -7.323, -4.016, 1.402 ], "groove_widths": [ 22.199, 16.973, 16.323, 14.355 ], "simple_Rise": 3.949, "simple_Twist": 31.177, "simple_hRise": 2.470, "simple_hTwist": 38.348 }, { "index": 11, "nt1": "///2/653", "nt2": "///2/21", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.443, 0.379, -1.793, -7.323, -4.016, 1.402 ], "step_params": [ -2.621, -1.950, 5.785, 10.311, 1.660, 55.049 ], "heli_params": [ -2.240, 3.795, 5.200, 1.778, -11.045, 55.955 ], "bp2_params": [ 0.116, -0.378, 1.114, 4.827, -2.343, -1.381 ], "groove_widths": [ 19.066, 15.401, 15.769, 14.888 ], "simple_Rise": 5.785, "simple_Twist": 52.097, "simple_hRise": 5.157, "simple_hTwist": 53.061 }, { "index": 12, "nt1": "///2/4", "nt2": "///2/20", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.116, -0.378, 1.114, 4.827, -2.343, -1.381 ], "step_params": [ -0.596, -1.843, 3.328, 1.820, 0.022, 34.964 ], "heli_params": [ -3.066, 1.268, 3.292, 0.037, -3.026, 35.009 ], "bp2_params": [ -0.081, -0.159, 0.541, 2.497, -3.247, 1.561 ], "groove_widths": [ 17.291, 14.897, 15.246, 15.244 ], "simple_Rise": 3.328, "simple_Twist": 35.956, "simple_hRise": 3.294, "simple_hTwist": 36.000 }, { "index": 13, "nt1": "///2/5", "nt2": "///2/19", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.081, -0.159, 0.541, 2.497, -3.247, 1.561 ], "step_params": [ -0.993, -1.764, 3.189, 3.582, 17.636, 36.500 ], "heli_params": [ -4.214, 1.771, 2.056, 26.286, -5.338, 40.559 ], "bp2_params": [ -0.204, -0.182, -0.625, -9.622, -6.747, 0.204 ], "groove_widths": [ 16.362, 14.091, 18.004, 16.693 ], "simple_Rise": 3.189, "simple_Twist": 37.142, "simple_hRise": 2.078, "simple_hTwist": 41.133 }, { "index": 14, "nt1": "///2/6", "nt2": "///2/18", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.204, -0.182, -0.625, -9.622, -6.747, 0.204 ], "step_params": [ 0.369, -1.219, 3.809, -2.926, 0.986, 31.413 ], "heli_params": [ -2.453, -1.306, 3.721, 1.815, 5.388, 31.561 ], "bp2_params": [ -0.032, 0.400, 0.142, -13.927, -3.177, 6.347 ], "groove_widths": [ 16.766, 13.388, 15.779, 14.958 ], "simple_Rise": 3.809, "simple_Twist": 30.616, "simple_hRise": 3.718, "simple_hTwist": 30.767 }, { "index": 15, "nt1": "///2/7", "nt2": "///2/17", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.032, 0.400, 0.142, -13.927, -3.177, 6.347 ], "step_params": [ -2.438, -2.707, 3.487, -6.387, 6.741, 16.604 ], "heli_params": [ -11.837, 3.934, 2.909, 21.310, 20.193, 19.008 ], "bp2_params": [ -6.719, -3.196, -0.316, -5.611, 5.720, -0.917 ], "groove_widths": [ 18.428, 15.948, 15.172, 13.495 ], "simple_Rise": 3.487, "simple_Twist": 58.235, "simple_hRise": 3.409, "simple_hTwist": 58.907 }, { "index": 16, "nt1": "///2/1195", "nt2": "///2/16", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.719, -3.196, -0.316, -5.611, 5.720, -0.917 ], "step_params": [ -1.656, -1.288, 3.213, -3.065, 1.754, 48.299 ], "heli_params": [ -1.705, 1.784, 3.260, 2.140, 3.740, 48.420 ], "bp2_params": [ -2.779, 0.063, -0.163, 4.714, 3.484, -20.005 ], "groove_widths": [ 18.298, 16.714, 14.563, 12.750 ], "simple_Rise": 3.213, "simple_Twist": 20.302, "simple_hRise": 3.302, "simple_hTwist": 20.604 }, { "index": 17, "nt1": "///2/1196", "nt2": "///2/15", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.779, 0.063, -0.163, 4.714, 3.484, -20.005 ], "step_params": [ 2.619, -1.889, 3.257, 1.556, 3.670, 39.037 ], "heli_params": [ -3.244, -3.717, 3.171, 5.475, -2.322, 39.232 ], "bp2_params": [ -0.163, -0.129, -0.236, 6.023, -2.812, 0.172 ], "groove_widths": [ 17.533, 15.632, 18.634, 15.485 ], "simple_Rise": 3.257, "simple_Twist": 26.440, "simple_hRise": 3.116, "simple_hTwist": 26.734 }, { "index": 18, "nt1": "///2/1197", "nt2": "///2/14", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.163, -0.129, -0.236, 6.023, -2.812, 0.172 ], "step_params": [ -0.884, -2.537, 3.036, -8.430, 20.753, 35.710 ], "heli_params": [ -5.197, 0.563, 1.558, 30.438, 12.364, 41.959 ], "bp2_params": [ -0.154, -0.119, -0.134, -0.627, 14.579, 0.033 ], "groove_widths": [ 17.864, 15.514, 16.609, 15.962 ], "simple_Rise": 3.036, "simple_Twist": 35.635, "simple_hRise": 1.555, "simple_hTwist": 41.896 }, { "index": 19, "nt1": "///2/1198", "nt2": "///2/13", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.119, -0.134, -0.627, 14.579, 0.033 ], "step_params": [ -0.580, -1.495, 3.042, 0.481, 9.355, 34.699 ], "heli_params": [ -3.591, 1.001, 2.558, 15.342, -0.789, 35.904 ], "bp2_params": [ -0.027, -0.145, -0.549, 7.738, 10.712, -1.541 ], "groove_widths": [ 18.371, 16.116, 26.534, 24.715 ], "simple_Rise": 3.042, "simple_Twist": 33.362, "simple_hRise": 2.535, "simple_hTwist": 34.617 }, { "index": 20, "nt1": "///2/1199", "nt2": "///2/12", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.027, -0.145, -0.549, 7.738, 10.712, -1.541 ], "step_params": [ -2.015, 2.195, 2.797, 14.983, -0.450, 106.125 ], "heli_params": [ 1.371, 1.418, 2.581, -0.281, -9.343, 106.860 ], "bp2_params": [ -1.270, -7.242, -0.012, 9.498, -13.313, -128.754 ], "groove_widths": [ 18.386, 16.422, 19.576, 15.148 ], "simple_Rise": 2.797, "simple_Twist": -2.230, "simple_hRise": 2.470, "simple_hTwist": -15.154 }, { "index": 21, "nt1": "///2/1200", "nt2": "///2/1357", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "bp1_params": [ -1.270, -7.242, -0.012, 9.498, -13.313, -128.754 ], "step_params": [ -2.168, -2.666, 2.277, 1.559, 3.917, -68.074 ], "heli_params": [ 2.272, -1.891, 2.452, -3.496, 1.392, -68.188 ], "bp2_params": [ -1.380, -0.438, 1.094, 37.865, 16.710, -0.204 ], "groove_widths": [ 18.561, null, 18.030, null ], "simple_Rise": 2.277, "simple_Twist": 47.253, "simple_hRise": 1.994, "simple_hTwist": 47.430 }, { "index": 22, "nt1": "///2/1201", "nt2": "///2/11", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.380, -0.438, 1.094, 37.865, 16.710, -0.204 ], "step_params": [ -0.591, -0.856, 3.710, 2.242, 9.754, 22.476 ], "heli_params": [ -5.238, 2.129, 3.008, 23.579, -5.419, 24.578 ], "bp2_params": [ -1.479, -0.012, 1.160, 49.211, -5.760, 0.993 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.710, "simple_Twist": 25.395, "simple_hRise": 3.111, "simple_hTwist": 27.265 }, { "index": 23, "nt1": "///2/1202", "nt2": "///2/10", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.479, -0.012, 1.160, 49.211, -5.760, 0.993 ], "step_params": [ -1.362, -2.258, 3.569, -17.036, 53.366, 29.454 ], "heli_params": [ -4.206, 0.658, 0.227, 61.403, 19.601, 62.731 ], "bp2_params": [ -2.887, -0.060, -0.794, 18.155, 43.585, 23.899 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.569, "simple_Twist": 35.495, "simple_hRise": 0.574, "simple_hTwist": 65.540 }, { "index": 24, "nt1": "///2/1203", "nt2": "///2/1697", "bp": "U-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 16, "num_stems": 0, "strand1": "AU", "strand2": "AA", "bp_type": "..", "helix_form": "x", "helical_rise": 3.238, "helical_rise_std": 0.049, "helical_radius": 6.834, "helical_radius_std": 1.323, "helical_axis": [ -0.855, 0.123, 0.505 ], "point1": [ 226.860, 156.773, 203.040 ], "point2": [ 224.101, 157.170, 204.669 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/523", "nt2": "///2/643", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "bp1_params": [ -4.561, -5.612, 1.369, -2.938, 10.333, 171.203 ], "step_params": [ -2.558, -2.025, 3.280, 2.004, 0.226, -178.261 ], "heli_params": [ 1.013, -1.279, 3.281, -0.113, 1.002, -178.261 ], "bp2_params": [ -0.850, 2.941, 1.889, 0.707, -3.559, -70.100 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.280, "simple_Twist": -15.007, "simple_hRise": 3.618, "simple_hTwist": -15.141 }, { "index": 2, "nt1": "///2/524", "nt2": "///2/594", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cWH", "DSSR": "cW+M" } ] }, { "index": 17, "num_stems": 2, "strand1": "CAGGCUCU", "strand2": "GUCCGAGC", "bp_type": "|||||||.", "helix_form": "...xAA.", "helical_rise": 2.033, "helical_rise_std": 1.653, "helical_radius": 9.753, "helical_radius_std": 2.705, "helical_axis": [ -0.940, 0.334, -0.073 ], "point1": [ 204.245, 147.953, 228.926 ], "point2": [ 191.193, 152.590, 227.918 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///2/532", "nt2": "///2/552", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.318, -0.151, 0.405, -0.602, 12.211, 6.681 ], "step_params": [ -2.614, -0.199, 2.948, 3.052, 15.661, 40.992 ], "heli_params": [ -1.557, 3.752, 2.521, 21.411, -4.173, 43.863 ], "bp2_params": [ 0.091, -0.276, -1.120, -5.101, -3.601, -2.234 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.948, "simple_Twist": 41.804, "simple_hRise": 2.533, "simple_hTwist": 44.618 }, { "index": 2, "nt1": "///2/533", "nt2": "///2/551", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.091, -0.276, -1.120, -5.101, -3.601, -2.234 ], "step_params": [ 3.885, -0.689, 4.301, 0.933, -19.382, 17.022 ], "heli_params": [ 6.319, -8.335, 3.510, -49.062, -2.361, 25.759 ], "bp2_params": [ -0.105, -0.363, -1.220, -3.145, -0.554, -1.539 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.301, "simple_Twist": 18.659, "simple_hRise": 3.628, "simple_hTwist": 26.858 }, { "index": 3, "nt1": "///2/534", "nt2": "///2/550", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.105, -0.363, -1.220, -3.145, -0.554, -1.539 ], "step_params": [ -2.757, -1.963, 3.713, -1.475, -1.347, 32.911 ], "heli_params": [ -3.192, 4.566, 3.905, -2.376, 2.601, 32.970 ], "bp2_params": [ 2.572, 0.503, -0.678, -9.931, -0.130, -23.761 ], "groove_widths": [ 20.331, null, 15.092, null ], "simple_Rise": 3.713, "simple_Twist": 20.303, "simple_hRise": 4.021, "simple_hTwist": 20.400 }, { "index": 4, "nt1": "///2/535", "nt2": "///2/549", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.572, 0.503, -0.678, -9.931, -0.130, -23.761 ], "step_params": [ 2.706, -5.293, 5.540, -6.332, 57.734, 92.765 ], "heli_params": [ -4.447, -1.820, 2.695, 37.262, 4.087, 105.814 ], "bp2_params": [ 0.232, -0.145, 0.471, -2.743, 11.533, 5.035 ], "groove_widths": [ 22.531, 18.296, 11.113, 9.465 ], "simple_Rise": 5.540, "simple_Twist": 103.175, "simple_hRise": 3.174, "simple_hTwist": 114.195 }, { "index": 5, "nt1": "///2/537", "nt2": "///2/546", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.232, -0.145, 0.471, -2.743, 11.533, 5.035 ], "step_params": [ -1.020, -2.144, 3.331, -0.282, 4.465, 24.307 ], "heli_params": [ -6.319, 2.300, 2.907, 10.489, 0.662, 24.709 ], "bp2_params": [ -0.657, -0.350, 0.241, 1.809, 22.352, -2.769 ], "groove_widths": [ 25.797, null, 9.471, null ], "simple_Rise": 3.331, "simple_Twist": 29.136, "simple_hRise": 2.986, "simple_hTwist": 29.470 }, { "index": 6, "nt1": "///2/538", "nt2": "///2/545", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.657, -0.350, 0.241, 1.809, 22.352, -2.769 ], "step_params": [ -0.725, -2.033, 3.092, 0.804, 2.331, 30.337 ], "heli_params": [ -4.300, 1.528, 2.911, 4.444, -1.533, 30.435 ], "bp2_params": [ -0.499, -0.407, -0.020, 15.869, 20.935, -8.398 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.092, "simple_Twist": 28.534, "simple_hRise": 2.899, "simple_hTwist": 28.639 }, { "index": 7, "nt1": "///2/539", "nt2": "///2/544", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.499, -0.407, -0.020, 15.869, 20.935, -8.398 ], "step_params": [ -4.702, -2.581, 3.407, 2.007, 8.232, 70.716 ], "heli_params": [ -2.496, 4.109, 3.013, 7.087, -1.728, 71.156 ], "bp2_params": [ 6.292, -4.042, -0.659, 15.228, -13.916, -77.139 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.407, "simple_Twist": 29.405, "simple_hRise": 2.298, "simple_hTwist": 30.575 }, { "index": 8, "nt1": "///2/540", "nt2": "///2/543", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M" } ] }, { "index": 18, "num_stems": 2, "strand1": "UUGAAUGAGUCCACU", "strand2": "AAAGAACGCAAUUUC", "bp_type": "||....|.||..|..", "helix_form": "Axxxxxx.......", "helical_rise": 3.080, "helical_rise_std": 1.609, "helical_radius": 9.643, "helical_radius_std": 2.925, "helical_axis": [ 0.708, 0.033, -0.705 ], "point1": [ 214.476, 145.581, 225.421 ], "point2": [ 244.948, 147.004, 195.073 ], "num_pairs": 15, "pairs": [ { "index": 1, "nt1": "///2/556", "nt2": "///2/529", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.043, -0.289, -0.893, -11.404, 9.392, -1.015 ], "step_params": [ 0.475, -1.124, 3.221, -0.640, 8.583, 31.360 ], "heli_params": [ -3.421, -0.954, 2.814, 15.516, 1.157, 32.491 ], "bp2_params": [ -0.079, -0.159, -0.645, -0.550, 0.567, 1.766 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.221, "simple_Twist": 31.277, "simple_hRise": 2.812, "simple_hTwist": 32.412 }, { "index": 2, "nt1": "///2/557", "nt2": "///2/528", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.079, -0.159, -0.645, -0.550, 0.567, 1.766 ], "step_params": [ -0.595, -2.817, 7.208, 6.805, 7.972, 58.605 ], "heli_params": [ -3.704, 1.337, 6.708, 8.074, -6.891, 59.453 ], "bp2_params": [ -0.370, 1.983, -0.946, -11.252, -5.987, -11.228 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 7.208, "simple_Twist": 59.605, "simple_hRise": 6.720, "simple_hTwist": 60.436 }, { "index": 3, "nt1": "///2/559", "nt2": "///2/526", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.370, 1.983, -0.946, -11.252, -5.987, -11.228 ], "step_params": [ 0.567, 1.756, 2.699, 15.610, 10.127, -56.880 ], "heli_params": [ -2.157, 1.171, 2.177, -10.331, 15.925, -59.603 ], "bp2_params": [ -0.084, -5.372, 1.226, -21.439, -38.047, 139.986 ], "groove_widths": [ 19.379, null, 10.707, null ], "simple_Rise": 2.699, "simple_Twist": 77.984, "simple_hRise": 2.927, "simple_hTwist": 79.827 }, { "index": 4, "nt1": "///2/560", "nt2": "///2/588", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ -0.084, -5.372, 1.226, -21.439, -38.047, 139.986 ], "step_params": [ 0.182, -4.571, 3.762, -12.672, 15.982, 165.387 ], "heli_params": [ -2.337, -0.118, 3.677, 8.055, 6.387, 165.619 ], "bp2_params": [ 4.830, 1.353, -0.746, 5.774, -1.727, -112.944 ], "groove_widths": [ 18.930, 16.417, 14.580, 11.405 ], "simple_Rise": 3.762, "simple_Twist": 6.814, "simple_hRise": -2.303, "simple_hTwist": 21.493 }, { "index": 5, "nt1": "///2/561", "nt2": "///2/590", "bp": "A-A", "name": "--", "Saenger": "05-V", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.830, 1.353, -0.746, 5.774, -1.727, -112.944 ], "step_params": [ -0.025, -0.412, 4.361, 4.022, 5.653, 22.375 ], "heli_params": [ -3.546, 1.863, 4.068, 14.136, -10.057, 23.413 ], "bp2_params": [ 3.268, 0.088, -0.084, -6.845, -13.788, -108.753 ], "groove_widths": [ 18.713, 17.360, 21.904, 20.708 ], "simple_Rise": 4.361, "simple_Twist": 26.976, "simple_hRise": 4.143, "simple_hTwist": 27.837 }, { "index": 6, "nt1": "///2/562", "nt2": "///2/587", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 3.268, 0.088, -0.084, -6.845, -13.788, -108.753 ], "step_params": [ 0.201, -1.274, 3.084, -7.400, -7.480, -32.205 ], "heli_params": [ 3.286, -0.740, 2.708, 13.057, -12.917, -33.837 ], "bp2_params": [ -0.198, -0.145, 0.506, 5.707, 1.658, 2.889 ], "groove_widths": [ 20.270, 14.969, 13.568, 13.431 ], "simple_Rise": 3.084, "simple_Twist": -13.280, "simple_hRise": 1.950, "simple_hTwist": -16.929 }, { "index": 7, "nt1": "///2/563", "nt2": "///2/592", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.145, 0.506, 5.707, 1.658, 2.889 ], "step_params": [ 2.751, 0.319, 3.625, -7.917, 5.950, 45.287 ], "heli_params": [ -0.124, -4.204, 3.143, 7.619, 10.139, 46.301 ], "bp2_params": [ -6.519, -3.352, -0.027, -4.290, 13.577, -5.399 ], "groove_widths": [ 19.010, 12.992, 14.951, 14.950 ], "simple_Rise": 3.625, "simple_Twist": 84.713, "simple_hRise": 3.420, "simple_hTwist": 85.181 }, { "index": 8, "nt1": "///2/564", "nt2": "///2/586", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.519, -3.352, -0.027, -4.290, 13.577, -5.399 ], "step_params": [ -0.157, -1.728, 2.867, -0.292, 2.861, 62.755 ], "heli_params": [ -1.769, 0.140, 2.795, 2.746, 0.281, 62.814 ], "bp2_params": [ 0.598, -0.244, -0.019, 5.616, 14.385, -8.232 ], "groove_widths": [ 17.830, 13.581, 13.010, 11.545 ], "simple_Rise": 2.867, "simple_Twist": 19.159, "simple_hRise": 2.586, "simple_hTwist": 19.372 }, { "index": 9, "nt1": "///2/565", "nt2": "///2/585", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.598, -0.244, -0.019, 5.616, 14.385, -8.232 ], "step_params": [ -0.870, -2.455, 3.250, 0.557, 2.553, 22.956 ], "heli_params": [ -6.976, 2.356, 2.942, 6.387, -1.395, 23.102 ], "bp2_params": [ -0.025, 0.292, -0.510, 14.275, 11.856, -7.696 ], "groove_widths": [ 18.670, 14.902, 15.357, 10.673 ], "simple_Rise": 3.250, "simple_Twist": 25.714, "simple_hRise": 2.977, "simple_hTwist": 25.844 }, { "index": 10, "nt1": "///2/566", "nt2": "///2/584", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.025, 0.292, -0.510, 14.275, 11.856, -7.696 ], "step_params": [ -0.328, -1.633, 3.925, 9.482, 13.375, 54.340 ], "heli_params": [ -2.580, 0.953, 3.375, 14.284, -10.127, 56.578 ], "bp2_params": [ 4.889, -1.880, -0.975, -1.732, -18.541, -18.371 ], "groove_widths": [ 17.789, 16.161, 16.728, 11.588 ], "simple_Rise": 3.925, "simple_Twist": 27.328, "simple_hRise": 2.616, "simple_hTwist": 31.788 }, { "index": 11, "nt1": "///2/567", "nt2": "///2/583", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.889, -1.880, -0.975, -1.732, -18.541, -18.371 ], "step_params": [ -0.670, -3.519, 3.454, 0.585, 21.011, -9.789 ], "heli_params": [ -4.082, -1.311, 4.669, -65.275, 1.816, -23.163 ], "bp2_params": [ -4.657, -2.142, -0.267, -7.118, -8.382, -20.487 ], "groove_widths": [ 17.798, 15.977, 16.687, 10.868 ], "simple_Rise": 3.454, "simple_Twist": 43.497, "simple_hRise": 1.671, "simple_hTwist": 48.087 }, { "index": 12, "nt1": "///2/568", "nt2": "///2/582", "bp": "C-U", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W-W", "bp1_params": [ -4.657, -2.142, -0.267, -7.118, -8.382, -20.487 ], "step_params": [ 1.559, -0.995, 3.784, -1.680, 1.579, 49.068 ], "heli_params": [ -1.333, -2.020, 3.700, 1.900, 2.022, 49.119 ], "bp2_params": [ 0.053, -0.055, -0.371, -9.083, -1.866, 1.499 ], "groove_widths": [ 17.479, null, 16.617, null ], "simple_Rise": 3.784, "simple_Twist": 22.628, "simple_hRise": 3.583, "simple_hTwist": 22.744 }, { "index": 13, "nt1": "///2/569", "nt2": "///2/581", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.053, -0.055, -0.371, -9.083, -1.866, 1.499 ], "step_params": [ -0.238, -2.729, 3.501, -3.923, 3.014, 26.471 ], "heli_params": [ -6.656, -0.524, 3.177, 6.509, 8.473, 26.921 ], "bp2_params": [ 0.433, -0.583, 0.809, -14.926, -1.231, -22.709 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.501, "simple_Twist": 23.972, "simple_hRise": 3.137, "simple_hTwist": 24.470 }, { "index": 14, "nt1": "///2/570", "nt2": "///2/580", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.433, -0.583, 0.809, -14.926, -1.231, -22.709 ], "step_params": [ 1.450, -1.707, 3.283, -0.889, 2.479, 54.923 ], "heli_params": [ -1.994, -1.623, 3.187, 2.687, 0.963, 54.981 ], "bp2_params": [ 4.951, -1.740, 1.569, -19.108, 14.374, 5.065 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.283, "simple_Twist": 28.848, "simple_hRise": 3.083, "simple_hTwist": 28.966 }, { "index": 15, "nt1": "///2/571", "nt2": "///2/579", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 19, "num_stems": 4, "strand1": "UGGAGCUGGCAGCGG", "strand2": "ACCUCGACCUGCGCC", "bp_type": "||||.||||..||||", "helix_form": "...xxAAAxx.AxA", "helical_rise": 1.376, "helical_rise_std": 2.557, "helical_radius": 11.443, "helical_radius_std": 4.912, "helical_axis": [ -0.647, 0.715, 0.263 ], "point1": [ 225.527, 176.951, 209.927 ], "point2": [ 212.793, 191.024, 215.092 ], "num_pairs": 15, "pairs": [ { "index": 1, "nt1": "///2/596", "nt2": "///2/640", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.357, -1.244, -12.235, 6.045, -3.562 ], "step_params": [ 1.067, -1.056, 3.230, -3.459, 23.001, 30.052 ], "heli_params": [ -4.219, -2.036, 1.861, 38.017, 5.718, 37.837 ], "bp2_params": [ 0.074, 0.889, 0.149, -8.441, -18.461, -0.435 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.230, "simple_Twist": 28.393, "simple_hRise": 1.777, "simple_hTwist": 36.552 }, { "index": 2, "nt1": "///2/597", "nt2": "///2/639", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.074, 0.889, 0.149, -8.441, -18.461, -0.435 ], "step_params": [ 1.000, -1.797, 3.278, 0.544, 2.965, 26.307 ], "heli_params": [ -4.689, -2.043, 3.080, 6.488, -1.191, 26.476 ], "bp2_params": [ -0.747, -0.148, 0.140, -3.349, -20.437, 8.968 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.278, "simple_Twist": 30.951, "simple_hRise": 3.113, "simple_hTwist": 31.094 }, { "index": 3, "nt1": "///2/598", "nt2": "///2/638", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.747, -0.148, 0.140, -3.349, -20.437, 8.968 ], "step_params": [ -0.659, -1.382, 3.875, 0.936, 0.623, 40.370 ], "heli_params": [ -2.085, 1.079, 3.839, 0.903, -1.356, 40.385 ], "bp2_params": [ 0.609, 0.277, -0.182, -14.133, -15.028, 4.066 ], "groove_widths": [ 15.383, null, 17.035, null ], "simple_Rise": 3.875, "simple_Twist": 32.659, "simple_hRise": 3.829, "simple_hTwist": 32.678 }, { "index": 4, "nt1": "///2/599", "nt2": "///2/637", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.609, 0.277, -0.182, -14.133, -15.028, 4.066 ], "step_params": [ -0.300, 1.063, 3.052, 7.619, 1.058, 173.326 ], "heli_params": [ 0.531, 0.156, 3.052, 0.530, -3.816, 173.341 ], "bp2_params": [ 0.628, -3.905, 0.199, -7.733, 4.589, 101.592 ], "groove_widths": [ 18.586, 15.675, 15.017, 13.937 ], "simple_Rise": 3.052, "simple_Twist": 42.687, "simple_hRise": 2.983, "simple_hTwist": 43.343 }, { "index": 5, "nt1": "///2/606", "nt2": "///2/636", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.628, -3.905, 0.199, -7.733, 4.589, 101.592 ], "step_params": [ -2.707, 0.153, 3.128, 6.994, 1.723, -100.506 ], "heli_params": [ -0.125, -1.653, 3.259, -1.119, 4.544, -100.694 ], "bp2_params": [ 0.193, -0.176, 0.308, 2.366, 8.535, 0.451 ], "groove_widths": [ 18.112, 16.800, 14.000, 9.626 ], "simple_Rise": 3.128, "simple_Twist": 32.803, "simple_hRise": 2.518, "simple_hTwist": 33.563 }, { "index": 6, "nt1": "///2/608", "nt2": "///2/635", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.176, 0.308, 2.366, 8.535, 0.451 ], "step_params": [ 0.824, -1.760, 3.088, 1.487, 5.261, 34.024 ], "heli_params": [ -3.716, -1.180, 2.825, 8.919, -2.521, 34.447 ], "bp2_params": [ -0.005, -0.111, 0.333, 5.923, 3.660, 1.088 ], "groove_widths": [ 18.178, 16.352, 19.712, 15.413 ], "simple_Rise": 3.088, "simple_Twist": 35.231, "simple_hRise": 2.835, "simple_hTwist": 35.640 }, { "index": 7, "nt1": "///2/609", "nt2": "///2/634", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.005, -0.111, 0.333, 5.923, 3.660, 1.088 ], "step_params": [ -0.199, -1.844, 2.969, 2.565, 25.777, 33.096 ], "heli_params": [ -4.556, 0.475, 1.253, 38.729, -3.854, 41.804 ], "bp2_params": [ -0.199, -0.147, -0.393, -1.856, -8.317, 1.995 ], "groove_widths": [ 22.996, 16.646, 14.886, 13.218 ], "simple_Rise": 2.969, "simple_Twist": 34.092, "simple_hRise": 1.302, "simple_hTwist": 42.583 }, { "index": 8, "nt1": "///2/610", "nt2": "///2/633", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.199, -0.147, -0.393, -1.856, -8.317, 1.995 ], "step_params": [ -0.172, -2.035, 3.717, -3.019, 16.686, 38.974 ], "heli_params": [ -4.556, -0.077, 2.673, 23.693, 4.287, 42.371 ], "bp2_params": [ -0.157, -0.075, -0.612, -25.745, -3.269, -1.430 ], "groove_widths": [ 22.508, 17.015, 15.592, 12.785 ], "simple_Rise": 3.717, "simple_Twist": 38.507, "simple_hRise": 2.657, "simple_hTwist": 41.945 }, { "index": 9, "nt1": "///2/611", "nt2": "///2/632", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.157, -0.075, -0.612, -25.745, -3.269, -1.430 ], "step_params": [ -2.348, 3.962, 2.842, 4.681, 41.814, 175.836 ], "heli_params": [ 1.964, 1.177, 2.890, 20.920, -2.342, 176.113 ], "bp2_params": [ -4.037, -1.199, 1.396, -22.199, -7.127, 45.449 ], "groove_widths": [ 13.957, 12.681, 18.162, 10.016 ], "simple_Rise": 2.842, "simple_Twist": 144.520, "simple_hRise": 3.243, "simple_hTwist": 146.956 }, { "index": 10, "nt1": "///2/615", "nt2": "///2/612", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -4.037, -1.199, 1.396, -22.199, -7.127, 45.449 ], "step_params": [ 2.503, 4.705, 3.498, 1.664, 8.614, 79.210 ], "heli_params": [ 3.411, -1.904, 3.952, 6.737, -1.301, 79.615 ], "bp2_params": [ -6.277, -3.277, 1.070, -21.202, 11.620, -3.744 ], "groove_widths": [ 10.115, 6.365, 23.709, 12.144 ], "simple_Rise": 3.498, "simple_Twist": 89.105, "simple_hRise": 3.882, "simple_hTwist": 89.445 }, { "index": 11, "nt1": "///2/616", "nt2": "///2/625", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.277, -3.277, 1.070, -21.202, 11.620, -3.744 ], "step_params": [ 0.969, -1.779, 3.014, 0.576, 7.084, 37.667 ], "heli_params": [ -3.489, -1.413, 2.662, 10.854, -0.882, 38.308 ], "bp2_params": [ -0.189, -0.131, 0.143, 0.286, 6.316, 0.537 ], "groove_widths": [ 15.677, 12.557, 19.346, 18.822 ], "simple_Rise": 3.014, "simple_Twist": -1.814, "simple_hRise": 2.388, "simple_hTwist": -7.335 }, { "index": 12, "nt1": "///2/617", "nt2": "///2/624", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.189, -0.131, 0.143, 0.286, 6.316, 0.537 ], "step_params": [ 0.548, -2.592, 3.394, -1.821, 1.413, 32.212 ], "heli_params": [ -4.915, -1.313, 3.245, 2.543, 3.276, 32.293 ], "bp2_params": [ 0.211, -0.134, 0.201, 4.108, 7.759, 3.869 ], "groove_widths": [ 18.553, null, 20.535, null ], "simple_Rise": 3.394, "simple_Twist": 29.836, "simple_hRise": 3.232, "simple_hTwist": 29.923 }, { "index": 13, "nt1": "///2/618", "nt2": "///2/623", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.211, -0.134, 0.201, 4.108, 7.759, 3.869 ], "step_params": [ -7.369, -0.124, 3.612, -11.132, -20.052, 59.322 ], "heli_params": [ 1.047, 6.382, 4.625, -19.489, 10.819, 63.223 ], "bp2_params": [ -0.182, -0.161, -0.470, -2.548, -3.109, 0.014 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.612, "simple_Twist": 61.593, "simple_hRise": 4.593, "simple_hTwist": 65.329 }, { "index": 14, "nt1": "///2/600", "nt2": "///2/622", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.161, -0.470, -2.548, -3.109, 0.014 ], "step_params": [ -0.614, -1.196, 3.442, -2.550, 8.180, 32.375 ], "heli_params": [ -3.450, 0.639, 3.094, 14.359, 4.477, 33.460 ], "bp2_params": [ -0.147, -0.258, -0.786, -0.047, 9.131, -2.773 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.442, "simple_Twist": 32.164, "simple_hRise": 3.091, "simple_hTwist": 33.257 }, { "index": 15, "nt1": "///2/601", "nt2": "///2/621", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 20, "num_stems": 2, "strand1": "GCAGAGCCACC", "strand2": "GGCCUUGGUGA", "bp_type": ".|.|||||||.", "helix_form": "x..xxAAx.x", "helical_rise": 2.801, "helical_rise_std": 0.979, "helical_radius": 9.731, "helical_radius_std": 2.541, "helical_axis": [ -0.952, 0.281, -0.122 ], "point1": [ 197.677, 188.844, 168.930 ], "point2": [ 171.089, 196.680, 165.510 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///2/659", "nt2": "///2/1165", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.237, 1.438, 0.970, 5.338, 0.384, -117.490 ], "step_params": [ 0.405, 1.127, 3.846, -14.356, 5.331, 50.483 ], "heli_params": [ 0.860, -1.564, 3.704, 6.091, 16.404, 52.608 ], "bp2_params": [ 0.187, -0.176, 0.209, 0.837, 2.502, -0.502 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.846, "simple_Twist": 28.299, "simple_hRise": 3.406, "simple_hTwist": 32.103 }, { "index": 2, "nt1": "///2/663", "nt2": "///2/1164", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.187, -0.176, 0.209, 0.837, 2.502, -0.502 ], "step_params": [ 2.080, -2.458, 2.697, 5.737, 19.082, 24.089 ], "heli_params": [ -6.905, -3.171, 0.990, 38.392, -11.542, 31.168 ], "bp2_params": [ -2.689, -0.191, 0.448, -11.878, -22.415, 9.307 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.697, "simple_Twist": 39.471, "simple_hRise": 1.667, "simple_hTwist": 44.036 }, { "index": 3, "nt1": "///2/664", "nt2": "///2/1163", "bp": "A-C", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.689, -0.191, 0.448, -11.878, -22.415, 9.307 ], "step_params": [ -0.978, -1.387, 3.304, 3.356, 4.290, 43.098 ], "heli_params": [ -2.282, 1.640, 3.078, 5.812, -4.547, 43.425 ], "bp2_params": [ -0.207, -0.155, -0.720, -7.708, -7.294, 2.655 ], "groove_widths": [ 13.794, null, 16.442, null ], "simple_Rise": 3.304, "simple_Twist": 29.873, "simple_hRise": 2.955, "simple_hTwist": 30.355 }, { "index": 4, "nt1": "///2/665", "nt2": "///2/1162", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.207, -0.155, -0.720, -7.708, -7.294, 2.655 ], "step_params": [ -0.336, -1.738, 3.525, -1.165, 4.139, 42.405 ], "heli_params": [ -2.832, 0.339, 3.356, 5.705, 1.606, 42.613 ], "bp2_params": [ 0.079, -0.129, -0.552, -8.464, -1.226, 6.358 ], "groove_widths": [ 17.118, 14.136, 18.859, 16.239 ], "simple_Rise": 3.525, "simple_Twist": 41.206, "simple_hRise": 3.350, "simple_hTwist": 41.420 }, { "index": 5, "nt1": "///2/671", "nt2": "///2/1161", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.079, -0.129, -0.552, -8.464, -1.226, 6.358 ], "step_params": [ 1.490, -2.744, 3.190, -1.071, 18.232, 14.759 ], "heli_params": [ -10.273, -3.874, -0.173, 51.286, 3.011, 23.442 ], "bp2_params": [ -1.043, 0.383, -0.008, -11.638, 7.071, 6.498 ], "groove_widths": [ 18.026, 16.130, 19.629, 13.046 ], "simple_Rise": 3.190, "simple_Twist": 20.530, "simple_hRise": 0.536, "simple_hTwist": 27.413 }, { "index": 6, "nt1": "///2/1089", "nt2": "///2/1160", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.043, 0.383, -0.008, -11.638, 7.071, 6.498 ], "step_params": [ -0.594, -1.531, 3.408, -1.569, 1.768, 30.362 ], "heli_params": [ -3.279, 0.806, 3.341, 3.369, 2.990, 30.451 ], "bp2_params": [ 0.212, -0.134, -0.140, -1.907, 10.646, 0.739 ], "groove_widths": [ 19.923, 16.225, 24.987, 23.982 ], "simple_Rise": 3.408, "simple_Twist": 23.537, "simple_hRise": 3.317, "simple_hTwist": 23.654 }, { "index": 7, "nt1": "///2/1090", "nt2": "///2/1159", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.212, -0.134, -0.140, -1.907, 10.646, 0.739 ], "step_params": [ 0.279, -2.070, 3.019, -1.018, 11.772, 32.327 ], "heli_params": [ -5.005, -0.603, 2.147, 20.315, 1.757, 34.365 ], "bp2_params": [ 0.193, -0.138, 0.308, 2.365, 1.481, 1.043 ], "groove_widths": [ 21.483, 16.224, 16.665, 16.665 ], "simple_Rise": 3.019, "simple_Twist": 32.361, "simple_hRise": 2.148, "simple_hTwist": 34.397 }, { "index": 8, "nt1": "///2/1091", "nt2": "///2/1158", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.138, 0.308, 2.365, 1.481, 1.043 ], "step_params": [ -0.956, -5.818, 5.180, -12.566, 37.495, 58.857 ], "heli_params": [ -6.668, 0.302, 1.762, 34.314, 11.500, 69.906 ], "bp2_params": [ 0.095, -0.098, 0.427, 2.386, -11.010, 0.133 ], "groove_widths": [ 21.427, null, 14.422, null ], "simple_Rise": 5.180, "simple_Twist": 59.548, "simple_hRise": 1.806, "simple_hTwist": 70.465 }, { "index": 9, "nt1": "///2/1093", "nt2": "///2/1152", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.095, -0.098, 0.427, 2.386, -11.010, 0.133 ], "step_params": [ 0.047, -1.539, 3.575, -0.516, -2.055, 38.826 ], "heli_params": [ -2.036, -0.141, 3.647, -3.089, 0.776, 38.881 ], "bp2_params": [ 0.193, -0.143, 0.046, -1.990, -14.603, -0.424 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.575, "simple_Twist": 38.312, "simple_hRise": 3.648, "simple_hTwist": 38.368 }, { "index": 10, "nt1": "///2/1094", "nt2": "///2/1151", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.143, 0.046, -1.990, -14.603, -0.424 ], "step_params": [ -1.793, -0.054, 3.927, -3.170, -5.936, 108.715 ], "heli_params": [ 0.057, 1.054, 3.961, -3.650, 1.949, 108.856 ], "bp2_params": [ 0.095, -0.287, 0.019, -13.087, 9.817, -168.625 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.927, "simple_Twist": 42.634, "simple_hRise": 4.016, "simple_hTwist": 43.138 }, { "index": 11, "nt1": "///2/1095", "nt2": "///2/1149", "bp": "C+A", "name": "~rWobble", "Saenger": "26-XXVI", "LW": "tWW", "DSSR": "tW+W" } ] }, { "index": 21, "num_stems": 1, "strand1": "UUA", "strand2": "AAA", "bp_type": "||.", "helix_form": "Ax", "helical_rise": 4.304, "helical_rise_std": 1.537, "helical_radius": 8.152, "helical_radius_std": 3.496, "helical_axis": [ 0.866, 0.057, 0.496 ], "point1": [ 181.540, 201.127, 178.579 ], "point2": [ 189.091, 201.623, 182.903 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/666", "nt2": "///2/1145", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.083, -0.094, -0.365, -4.181, -6.837, -2.235 ], "step_params": [ -0.241, -0.921, 3.512, -0.614, 1.759, 36.848 ], "heli_params": [ -1.710, 0.293, 3.470, 2.781, 0.971, 36.894 ], "bp2_params": [ -0.075, -0.150, -0.466, -4.165, -5.205, 1.445 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.512, "simple_Twist": 36.865, "simple_hRise": 3.470, "simple_hTwist": 36.910 }, { "index": 2, "nt1": "///2/667", "nt2": "///2/1144", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.075, -0.150, -0.466, -4.165, -5.205, 1.445 ], "step_params": [ 1.909, 5.169, 5.929, 1.833, -13.045, -74.116 ], "heli_params": [ -3.472, 1.674, 6.591, 10.741, 1.510, -75.112 ], "bp2_params": [ 5.458, -4.790, 0.224, -52.319, 24.779, 175.258 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.929, "simple_Twist": 138.104, "simple_hRise": 5.711, "simple_hTwist": 138.393 }, { "index": 3, "nt1": "///2/668", "nt2": "///2/670", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM-W" } ] }, { "index": 22, "num_stems": 2, "strand1": "GGGAGCG", "strand2": "CCCCUGC", "bp_type": "|||..||", "helix_form": ".A....", "helical_rise": 2.637, "helical_rise_std": 0.981, "helical_radius": 8.998, "helical_radius_std": 1.630, "helical_axis": [ -0.658, -0.636, 0.402 ], "point1": [ 174.951, 152.854, 145.309 ], "point2": [ 164.569, 142.816, 151.655 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///2/690", "nt2": "///2/736", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.192, -0.172, 0.200, -13.429, 7.335, 2.109 ], "step_params": [ -0.307, 0.196, 4.357, -1.527, 6.118, 19.522 ], "heli_params": [ -3.099, -0.050, 4.230, 17.463, 4.359, 20.506 ], "bp2_params": [ -0.123, -0.187, -0.507, -9.101, 17.892, -1.853 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.357, "simple_Twist": 19.269, "simple_hRise": 4.226, "simple_hTwist": 20.266 }, { "index": 2, "nt1": "///2/691", "nt2": "///2/735", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.123, -0.187, -0.507, -9.101, 17.892, -1.853 ], "step_params": [ -0.125, -1.314, 3.277, -3.370, 11.225, 26.435 ], "heli_params": [ -4.950, -0.445, 2.518, 23.154, 6.951, 28.874 ], "bp2_params": [ -0.211, -0.224, -0.418, 3.841, 27.786, -3.422 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.277, "simple_Twist": 26.300, "simple_hRise": 2.513, "simple_hTwist": 28.751 }, { "index": 3, "nt1": "///2/692", "nt2": "///2/734", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.211, -0.224, -0.418, 3.841, 27.786, -3.422 ], "step_params": [ 1.518, -1.037, 3.009, 1.187, 29.269, 26.290 ], "heli_params": [ -4.375, -2.150, 1.326, 48.931, -1.984, 39.168 ], "bp2_params": [ -1.402, 0.184, -0.796, 17.325, 4.747, 14.996 ], "groove_widths": [ 20.069, null, 18.436, null ], "simple_Rise": 3.009, "simple_Twist": 33.143, "simple_hRise": 1.662, "simple_hTwist": 43.959 }, { "index": 4, "nt1": "///2/693", "nt2": "///2/733", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.402, 0.184, -0.796, 17.325, 4.747, 14.996 ], "step_params": [ 1.529, -1.721, 4.435, -1.927, -2.494, 27.541 ], "heli_params": [ -2.772, -3.825, 4.455, -5.217, 4.031, 27.718 ], "bp2_params": [ 0.088, 1.342, -1.729, 16.804, 14.027, 34.124 ], "groove_widths": [ 17.993, null, 16.731, null ], "simple_Rise": 4.435, "simple_Twist": 18.924, "simple_hRise": 4.445, "simple_hTwist": 19.182 }, { "index": 5, "nt1": "///2/694", "nt2": "///2/732", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.088, 1.342, -1.729, 16.804, 14.027, 34.124 ], "step_params": [ -2.232, -1.616, 3.494, 1.985, 0.133, 38.751 ], "heli_params": [ -2.450, 3.615, 3.375, 0.201, -2.989, 38.800 ], "bp2_params": [ 0.651, -0.961, -1.869, 18.709, 0.139, -13.535 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.494, "simple_Twist": 36.223, "simple_hRise": 3.365, "simple_hTwist": 36.276 }, { "index": 6, "nt1": "///2/695", "nt2": "///2/731", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.651, -0.961, -1.869, 18.709, 0.139, -13.535 ], "step_params": [ 3.912, -2.202, 4.320, 14.249, 42.727, 25.466 ], "heli_params": [ -6.149, -3.305, 1.462, 58.821, -19.617, 51.413 ], "bp2_params": [ -0.201, 0.005, -0.233, -37.014, -3.712, 2.195 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.320, "simple_Twist": 29.770, "simple_hRise": 1.763, "simple_hTwist": 53.559 }, { "index": 7, "nt1": "///2/696", "nt2": "///2/730", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 23, "num_stems": 3, "strand1": "UGCUCGGGCC", "strand2": "GCGAGCCCGG", "bp_type": ".||||.||||", "helix_form": "..x...x..", "helical_rise": 3.750, "helical_rise_std": 0.997, "helical_radius": 8.953, "helical_radius_std": 2.009, "helical_axis": [ -0.266, -0.839, -0.474 ], "point1": [ 191.003, 156.991, 129.459 ], "point2": [ 181.968, 128.463, 113.334 ], "num_pairs": 10, "pairs": [ { "index": 1, "nt1": "///2/743", "nt2": "///2/798", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "bp1_params": [ -3.387, -0.390, -1.208, -67.841, 18.191, 46.793 ], "step_params": [ -1.794, 1.473, 4.287, 9.083, -10.849, 38.560 ], "heli_params": [ 3.522, 3.750, 3.286, -15.796, -13.223, 40.981 ], "bp2_params": [ 0.144, -0.328, -1.395, -22.769, 21.220, -9.202 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.287, "simple_Twist": 7.908, "simple_hRise": 0.109, "simple_hTwist": 16.199 }, { "index": 2, "nt1": "///2/744", "nt2": "///2/797", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.144, -0.328, -1.395, -22.769, 21.220, -9.202 ], "step_params": [ 2.412, -1.990, 3.893, -7.690, 15.265, 20.928 ], "heli_params": [ -7.732, -6.917, 1.239, 35.371, 17.820, 26.961 ], "bp2_params": [ 0.418, -0.127, -0.207, -14.396, 33.474, 0.641 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.893, "simple_Twist": 19.339, "simple_hRise": 1.052, "simple_hTwist": 25.756 }, { "index": 3, "nt1": "///2/745", "nt2": "///2/796", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.418, -0.127, -0.207, -14.396, 33.474, 0.641 ], "step_params": [ 0.872, -2.376, 3.100, 13.017, 44.077, 81.129 ], "heli_params": [ -2.402, -0.392, 1.978, 31.752, -9.377, 91.244 ], "bp2_params": [ -0.008, -0.080, 0.179, 2.577, -1.869, 5.761 ], "groove_widths": [ 20.927, null, 12.835, null ], "simple_Rise": 3.100, "simple_Twist": 82.150, "simple_hRise": 1.999, "simple_hTwist": 92.100 }, { "index": 4, "nt1": "///2/749", "nt2": "///2/794", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.008, -0.080, 0.179, 2.577, -1.869, 5.761 ], "step_params": [ -1.405, -1.919, 3.480, 2.147, -1.696, 31.036 ], "heli_params": [ -3.229, 3.052, 3.474, -3.161, -4.003, 31.154 ], "bp2_params": [ 0.152, -0.273, -0.880, 1.026, 0.258, -0.511 ], "groove_widths": [ 18.035, 13.989, 10.363, 10.003 ], "simple_Rise": 3.480, "simple_Twist": 30.149, "simple_hRise": 3.474, "simple_hTwist": 30.270 }, { "index": 5, "nt1": "///2/750", "nt2": "///2/793", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.152, -0.273, -0.880, 1.026, 0.258, -0.511 ], "step_params": [ -0.856, -1.830, 5.907, 16.061, 14.407, 38.565 ], "heli_params": [ -4.731, 3.693, 4.331, 20.023, -22.321, 43.989 ], "bp2_params": [ 1.335, -2.026, -3.522, -33.833, -15.457, -21.917 ], "groove_widths": [ 16.808, 11.594, 13.709, 12.723 ], "simple_Rise": 5.907, "simple_Twist": 29.845, "simple_hRise": 3.765, "simple_hTwist": 36.683 }, { "index": 6, "nt1": "///2/751", "nt2": "///2/792", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.335, -2.026, -3.522, -33.833, -15.457, -21.917 ], "step_params": [ -1.818, -0.913, 4.568, -11.113, -2.100, 40.914 ], "heli_params": [ -0.946, 0.841, 4.916, -2.937, 15.543, 42.384 ], "bp2_params": [ 1.116, 1.146, -0.009, -54.025, 8.471, -37.486 ], "groove_widths": [ 17.740, 13.869, 14.931, 14.882 ], "simple_Rise": 4.568, "simple_Twist": 46.200, "simple_hRise": 4.891, "simple_hTwist": 47.490 }, { "index": 7, "nt1": "///2/752", "nt2": "///2/791", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.116, 1.146, -0.009, -54.025, 8.471, -37.486 ], "step_params": [ 2.174, -2.384, 3.271, 14.217, 1.357, 23.316 ], "heli_params": [ -5.448, -0.460, 3.802, 3.022, -31.655, 27.291 ], "bp2_params": [ 0.005, -0.263, -1.038, -13.035, 18.535, -6.361 ], "groove_widths": [ 19.612, null, 16.479, null ], "simple_Rise": 3.271, "simple_Twist": 28.248, "simple_hRise": 3.791, "simple_hTwist": 31.587 }, { "index": 8, "nt1": "///2/754", "nt2": "///2/790", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.005, -0.263, -1.038, -13.035, 18.535, -6.361 ], "step_params": [ 1.920, -1.817, 3.654, -2.934, 12.095, 21.041 ], "heli_params": [ -7.835, -5.399, 2.038, 29.976, 7.270, 24.410 ], "bp2_params": [ 0.186, -0.270, -0.629, -1.401, 30.065, -5.031 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.654, "simple_Twist": 19.572, "simple_hRise": 1.914, "simple_hTwist": 23.161 }, { "index": 9, "nt1": "///2/755", "nt2": "///2/789", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.186, -0.270, -0.629, -1.401, 30.065, -5.031 ], "step_params": [ 1.876, -1.191, 3.267, 12.014, 38.585, 39.524 ], "heli_params": [ -3.410, -1.334, 1.954, 45.283, -14.099, 55.941 ], "bp2_params": [ 0.189, -0.198, -0.682, -2.869, -2.363, 2.235 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.267, "simple_Twist": 39.298, "simple_hRise": 1.945, "simple_hTwist": 55.789 }, { "index": 10, "nt1": "///2/756", "nt2": "///2/788", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 24, "num_stems": 1, "strand1": "UUUACUUGA", "strand2": "UAAUAGACG", "bp_type": ".|||.|||.", "helix_form": "..Ax.xx.", "helical_rise": 3.069, "helical_rise_std": 1.319, "helical_radius": 9.492, "helical_radius_std": 3.237, "helical_axis": [ 0.528, -0.474, 0.705 ], "point1": [ 185.463, 173.756, 135.137 ], "point2": [ 198.367, 162.180, 152.352 ], "num_pairs": 9, "pairs": [ { "index": 1, "nt1": "///2/799", "nt2": "///2/866", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -4.134, -1.770, -1.084, 6.608, -18.605, 8.705 ], "step_params": [ -0.057, -0.864, 3.903, 2.180, 2.979, 36.232 ], "heli_params": [ -1.873, 0.450, 3.812, 4.775, -3.494, 36.413 ], "bp2_params": [ -1.800, 0.044, -1.491, 4.092, -18.376, -5.333 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.903, "simple_Twist": 19.400, "simple_hRise": 3.700, "simple_hTwist": 19.745 }, { "index": 2, "nt1": "///2/800", "nt2": "///2/865", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.800, 0.044, -1.491, 4.092, -18.376, -5.333 ], "step_params": [ 1.531, -1.988, 4.048, -8.614, 19.527, 31.461 ], "heli_params": [ -5.634, -3.494, 2.044, 31.840, 14.046, 37.865 ], "bp2_params": [ 0.015, -0.107, 0.344, -7.726, 18.630, 5.192 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.048, "simple_Twist": 22.074, "simple_hRise": 1.258, "simple_hTwist": 30.612 }, { "index": 3, "nt1": "///2/801", "nt2": "///2/864", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.015, -0.107, 0.344, -7.726, 18.630, 5.192 ], "step_params": [ 0.096, -1.541, 3.236, 3.050, 31.263, 36.682 ], "heli_params": [ -3.983, 0.085, 1.543, 41.587, -4.057, 47.938 ], "bp2_params": [ -0.005, -0.051, 0.078, -18.841, -10.938, -0.227 ], "groove_widths": [ 19.118, null, 12.664, null ], "simple_Rise": 3.236, "simple_Twist": 36.079, "simple_hRise": 1.514, "simple_hTwist": 47.491 }, { "index": 4, "nt1": "///2/802", "nt2": "///2/863", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.005, -0.051, 0.078, -18.841, -10.938, -0.227 ], "step_params": [ 4.321, 0.161, 4.058, -2.832, -7.313, 49.398 ], "heli_params": [ 0.829, -5.361, 3.762, -8.687, 3.365, 49.978 ], "bp2_params": [ -1.552, 0.472, -0.532, -21.080, 32.093, 20.018 ], "groove_widths": [ 19.555, 15.057, 16.174, 14.404 ], "simple_Rise": 4.058, "simple_Twist": 60.067, "simple_hRise": 3.829, "simple_hTwist": 60.530 }, { "index": 5, "nt1": "///2/803", "nt2": "///2/861", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.552, 0.472, -0.532, -21.080, 32.093, 20.018 ], "step_params": [ 0.915, 0.748, 2.976, -5.242, 7.499, 36.217 ], "heli_params": [ 0.262, -2.064, 2.912, 11.832, 8.272, 37.318 ], "bp2_params": [ 2.766, -0.243, 0.236, 13.859, 26.402, 35.538 ], "groove_widths": [ 24.313, 15.898, 12.951, 11.264 ], "simple_Rise": 2.976, "simple_Twist": 7.185, "simple_hRise": 1.910, "simple_hTwist": 11.629 }, { "index": 6, "nt1": "///2/804", "nt2": "///2/860", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.766, -0.243, 0.236, 13.859, 26.402, 35.538 ], "step_params": [ 0.507, -2.225, 4.610, -2.161, 51.369, 45.445 ], "heli_params": [ -4.364, -0.555, 1.587, 51.213, 2.155, 67.578 ], "bp2_params": [ -0.025, -0.149, -0.514, -6.709, -12.243, 5.021 ], "groove_widths": [ 27.115, null, 12.135, null ], "simple_Rise": 4.610, "simple_Twist": 64.272, "simple_hRise": 2.518, "simple_hTwist": 80.546 }, { "index": 7, "nt1": "///2/805", "nt2": "///2/858", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.025, -0.149, -0.514, -6.709, -12.243, 5.021 ], "step_params": [ -0.762, -3.138, 6.753, -9.425, 16.027, 61.597 ], "heli_params": [ -4.327, -0.087, 5.911, 15.282, 8.987, 64.077 ], "bp2_params": [ -0.203, -0.183, -0.759, -3.488, -2.776, 2.285 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.753, "simple_Twist": 62.772, "simple_hRise": 5.935, "simple_hTwist": 65.197 }, { "index": 8, "nt1": "///2/807", "nt2": "///2/856", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.203, -0.183, -0.759, -3.488, -2.776, 2.285 ], "step_params": [ -0.284, -1.738, 3.514, 2.312, 2.343, 32.060 ], "heli_params": [ -3.570, 0.945, 3.354, 4.228, -4.172, 32.224 ], "bp2_params": [ 0.245, 1.268, -1.141, -3.007, 1.372, -6.436 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.514, "simple_Twist": 29.865, "simple_hRise": 3.340, "simple_hTwist": 30.042 }, { "index": 9, "nt1": "///2/808", "nt2": "///2/855", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 25, "num_stems": 1, "strand1": "UAG", "strand2": "AUA", "bp_type": "||.", "helix_form": "..", "helical_rise": 2.939, "helical_rise_std": 0.252, "helical_radius": 9.162, "helical_radius_std": 0.937, "helical_axis": [ 0.126, -0.558, 0.820 ], "point1": [ 213.045, 154.551, 164.939 ], "point2": [ 213.773, 151.339, 169.659 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/815", "nt2": "///2/849", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.076, -0.147, 0.662, 5.198, -0.561, 0.718 ], "step_params": [ -0.361, -1.479, 2.953, 7.471, 22.989, 40.358 ], "heli_params": [ -3.375, 0.947, 1.815, 30.272, -9.838, 46.783 ], "bp2_params": [ 0.028, -0.145, -0.698, -5.234, -21.898, 1.149 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.953, "simple_Twist": 39.665, "simple_hRise": 1.792, "simple_hTwist": 46.196 }, { "index": 2, "nt1": "///2/816", "nt2": "///2/848", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.028, -0.145, -0.698, -5.234, -21.898, 1.149 ], "step_params": [ -1.225, -0.301, 4.381, -5.414, -3.258, 58.438 ], "heli_params": [ -0.078, 0.869, 4.478, -3.326, 5.528, 58.749 ], "bp2_params": [ 6.962, -3.741, -0.035, -14.283, -22.255, -3.326 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.381, "simple_Twist": 13.956, "simple_hRise": 4.490, "simple_hTwist": 15.314 }, { "index": 3, "nt1": "///2/817", "nt2": "///2/847", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 26, "num_stems": 2, "strand1": "GCAGGC", "strand2": "UGUCCG", "bp_type": "||.|||", "helix_form": ".x...", "helical_rise": 3.038, "helical_rise_std": 1.828, "helical_radius": 9.784, "helical_radius_std": 4.445, "helical_axis": [ -0.573, -0.788, -0.227 ], "point1": [ 223.346, 140.399, 176.566 ], "point2": [ 214.390, 128.081, 173.012 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/828", "nt2": "///2/820", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.735, -0.154, 1.195, 8.511, 8.422, 4.911 ], "step_params": [ -0.297, -1.275, 3.794, 2.455, 3.258, 37.659 ], "heli_params": [ -2.441, 0.816, 3.650, 5.030, -3.790, 37.871 ], "bp2_params": [ 0.210, -0.194, 0.534, 9.334, -1.020, 1.093 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.794, "simple_Twist": 27.198, "simple_hRise": 3.580, "simple_hTwist": 27.497 }, { "index": 2, "nt1": "///2/829", "nt2": "///2/819", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.210, -0.194, 0.534, 9.334, -1.020, 1.093 ], "step_params": [ -3.089, -9.084, -3.341, -40.404, 8.950, -161.348 ], "heli_params": [ 4.616, -1.466, -3.397, -4.530, -20.449, -162.560 ], "bp2_params": [ 0.325, 1.140, 1.311, 1.946, 7.763, 164.729 ], "groove_widths": [ null, null, null, null ], "simple_Rise": -3.341, "simple_Twist": -50.061, "simple_hRise": -3.299, "simple_hTwist": -64.089 }, { "index": 3, "nt1": "///2/830", "nt2": "///2/844", "bp": "A+U", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 0.325, 1.140, 1.311, 1.946, 7.763, 164.729 ], "step_params": [ -1.249, -2.455, 4.013, 0.230, -0.410, -102.225 ], "heli_params": [ 1.584, -0.798, 4.008, 0.263, 0.148, -102.225 ], "bp2_params": [ -0.174, -0.303, -1.016, 0.451, -3.969, 0.288 ], "groove_widths": [ 16.654, null, 26.501, null ], "simple_Rise": 4.013, "simple_Twist": 8.693, "simple_hRise": 4.089, "simple_hTwist": 8.706 }, { "index": 4, "nt1": "///2/831", "nt2": "///2/843", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.174, -0.303, -1.016, 0.451, -3.969, 0.288 ], "step_params": [ 0.039, -0.993, 4.255, 1.993, -1.025, 33.739 ], "heli_params": [ -1.492, 0.353, 4.278, -1.763, -3.429, 33.811 ], "bp2_params": [ -0.221, -0.260, -0.799, 8.614, -9.667, 4.575 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.255, "simple_Twist": 34.399, "simple_hRise": 4.278, "simple_hTwist": 34.470 }, { "index": 5, "nt1": "///2/832", "nt2": "///2/842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.221, -0.260, -0.799, 8.614, -9.667, 4.575 ], "step_params": [ -0.822, -0.944, 3.211, 5.856, -3.471, 29.373 ], "heli_params": [ -1.125, 2.746, 3.082, -6.732, -11.357, 30.135 ], "bp2_params": [ -1.291, 0.243, -1.841, 16.189, -26.086, -23.447 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.211, "simple_Twist": 35.090, "simple_hRise": 3.114, "simple_hTwist": 35.724 }, { "index": 6, "nt1": "///2/833", "nt2": "///2/841", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 27, "num_stems": 1, "strand1": "GACCGCGGUUCU", "strand2": "CCGGAGUCAAGG", "bp_type": "|.|..||||||.", "helix_form": "...........", "helical_rise": 3.009, "helical_rise_std": 0.631, "helical_radius": 9.602, "helical_radius_std": 1.398, "helical_axis": [ 0.652, -0.463, -0.601 ], "point1": [ 170.707, 175.128, 114.723 ], "point2": [ 192.308, 159.787, 94.816 ], "num_pairs": 12, "pairs": [ { "index": 1, "nt1": "///2/874", "nt2": "///2/912", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.169, -0.157, 0.115, 1.211, -0.559, -2.246 ], "step_params": [ -0.847, -2.262, 3.779, -4.115, 33.540, 14.741 ], "heli_params": [ -7.017, 0.921, -0.420, 66.604, 8.171, 36.781 ], "bp2_params": [ -3.153, -1.528, -2.287, -8.245, -29.564, -26.827 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.779, "simple_Twist": 30.329, "simple_hRise": 1.011, "simple_hTwist": 45.109 }, { "index": 2, "nt1": "///2/875", "nt2": "///2/911", "bp": "A-C", "name": "--", "Saenger": "--", "LW": ".HW", "DSSR": ".M-W", "bp1_params": [ -3.153, -1.528, -2.287, -8.245, -29.564, -26.827 ], "step_params": [ 1.327, -0.772, 3.996, -4.913, -1.823, 54.941 ], "heli_params": [ -0.704, -1.784, 3.895, -1.970, 5.312, 55.171 ], "bp2_params": [ 0.209, -0.328, -1.011, -12.831, -9.631, 5.078 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.996, "simple_Twist": 36.981, "simple_hRise": 3.827, "simple_hTwist": 37.338 }, { "index": 3, "nt1": "///2/876", "nt2": "///2/910", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.209, -0.328, -1.011, -12.831, -9.631, 5.078 ], "step_params": [ -1.334, -0.978, 3.653, -2.420, -1.879, 21.628 ], "heli_params": [ -1.735, 2.431, 3.847, -4.976, 6.408, 21.842 ], "bp2_params": [ -2.453, 1.190, 0.076, -15.593, -11.198, -17.883 ], "groove_widths": [ 17.480, null, 16.430, null ], "simple_Rise": 3.653, "simple_Twist": 33.760, "simple_hRise": 3.784, "simple_hTwist": 33.895 }, { "index": 4, "nt1": "///2/877", "nt2": "///2/909", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.453, 1.190, 0.076, -15.593, -11.198, -17.883 ], "step_params": [ 1.695, -1.068, 3.236, 4.937, 3.639, 33.340 ], "heli_params": [ -2.424, -2.107, 3.314, 6.277, -8.515, 33.883 ], "bp2_params": [ 0.988, 1.800, -0.615, -2.852, -1.593, -12.673 ], "groove_widths": [ 18.668, 17.952, 17.676, 17.049 ], "simple_Rise": 3.236, "simple_Twist": 18.283, "simple_hRise": 3.301, "simple_hTwist": 19.276 }, { "index": 5, "nt1": "///2/878", "nt2": "///2/908", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.988, 1.800, -0.615, -2.852, -1.593, -12.673 ], "step_params": [ 1.533, -2.359, 3.208, 1.595, 10.073, 19.639 ], "heli_params": [ -9.331, -3.494, 1.899, 27.281, -4.320, 22.106 ], "bp2_params": [ 0.177, -0.205, -0.552, 1.528, -0.924, -0.766 ], "groove_widths": [ 18.830, 17.287, 19.404, 17.359 ], "simple_Rise": 3.208, "simple_Twist": 23.016, "simple_hRise": 2.104, "simple_hTwist": 25.146 }, { "index": 6, "nt1": "///2/879", "nt2": "///2/907", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.177, -0.205, -0.552, 1.528, -0.924, -0.766 ], "step_params": [ 1.295, -0.985, 3.020, -3.813, 35.702, 41.102 ], "heli_params": [ -2.904, -1.619, 1.624, 42.465, 4.536, 54.060 ], "bp2_params": [ -1.402, -0.486, 0.361, -17.217, -23.450, 2.738 ], "groove_widths": [ 18.860, 16.130, 20.316, 17.453 ], "simple_Rise": 3.020, "simple_Twist": 49.051, "simple_hRise": 1.877, "simple_hTwist": 60.125 }, { "index": 7, "nt1": "///2/880", "nt2": "///2/906", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.402, -0.486, 0.361, -17.217, -23.450, 2.738 ], "step_params": [ -1.977, -2.515, 3.561, 3.120, 9.692, 20.515 ], "heli_params": [ -9.367, 5.958, 1.876, 25.301, -8.144, 22.879 ], "bp2_params": [ -0.097, -0.345, -1.245, -8.998, 1.173, -2.383 ], "groove_widths": [ 18.545, 15.216, 19.410, 18.037 ], "simple_Rise": 3.561, "simple_Twist": 14.034, "simple_hRise": 1.134, "simple_hTwist": 17.324 }, { "index": 8, "nt1": "///2/881", "nt2": "///2/905", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.097, -0.345, -1.245, -8.998, 1.173, -2.383 ], "step_params": [ -0.754, -1.438, 4.498, -5.128, 0.834, 31.786 ], "heli_params": [ -2.800, 0.090, 4.522, 1.510, 9.284, 32.197 ], "bp2_params": [ -0.254, -0.628, -1.656, -5.544, 7.553, -11.518 ], "groove_widths": [ 18.512, 15.538, 18.246, 17.202 ], "simple_Rise": 4.498, "simple_Twist": 32.829, "simple_hRise": 4.523, "simple_hTwist": 33.227 }, { "index": 9, "nt1": "///2/882", "nt2": "///2/904", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.254, -0.628, -1.656, -5.544, 7.553, -11.518 ], "step_params": [ 0.197, -1.307, 3.861, -1.404, 3.288, 31.464 ], "heli_params": [ -3.100, -0.662, 3.697, 6.039, 2.578, 31.661 ], "bp2_params": [ -0.250, -0.340, -1.174, 2.491, 13.923, -8.545 ], "groove_widths": [ 19.343, null, 17.444, null ], "simple_Rise": 3.861, "simple_Twist": 31.308, "simple_hRise": 3.696, "simple_hTwist": 31.507 }, { "index": 10, "nt1": "///2/883", "nt2": "///2/903", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.250, -0.340, -1.174, 2.491, 13.923, -8.545 ], "step_params": [ 1.436, -1.322, 4.121, 0.503, 4.151, 29.398 ], "heli_params": [ -3.659, -2.672, 3.924, 8.127, -0.985, 29.687 ], "bp2_params": [ 0.048, -0.195, -0.893, 17.937, 15.433, -3.561 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.121, "simple_Twist": 27.424, "simple_hRise": 3.907, "simple_hTwist": 27.735 }, { "index": 11, "nt1": "///2/884", "nt2": "///2/902", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.048, -0.195, -0.893, 17.937, 15.433, -3.561 ], "step_params": [ 2.660, -1.474, 3.550, 22.815, 26.458, 20.593 ], "heli_params": [ -5.794, -0.696, 2.369, 45.745, -39.446, 40.391 ], "bp2_params": [ -1.668, -0.594, -1.509, -1.293, -24.109, 8.738 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.550, "simple_Twist": 30.809, "simple_hRise": 2.858, "simple_hTwist": 46.261 }, { "index": 12, "nt1": "///2/885", "nt2": "///2/901", "bp": "U-G", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 28, "num_stems": 1, "strand1": "GA", "strand2": "CU", "bp_type": "||", "helix_form": ".", "helical_rise": 2.307, "helical_rise_std": 0.094, "helical_radius": 9.322, "helical_radius_std": 0.910, "helical_axis": [ -0.478, -0.761, 0.440 ], "point1": [ 182.868, 264.235, 187.114 ], "point2": [ 181.767, 262.484, 188.127 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/956", "nt2": "///2/967", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.051, -0.345, -1.542, -20.200, 2.101, -1.538 ], "step_params": [ 0.282, -1.611, 3.624, -6.134, 19.778, 33.971 ], "heli_params": [ -4.650, -1.122, 2.301, 30.584, 9.485, 39.625 ], "bp2_params": [ 0.041, -0.005, -0.721, -27.766, -10.546, 1.567 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.624, "simple_Twist": 32.746, "simple_hRise": 2.245, "simple_hTwist": 38.592 }, { "index": 2, "nt1": "///2/957", "nt2": "///2/966", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 29, "num_stems": 5, "strand1": "GACGGCGCAAGACGUUUGCCAAGUGUUUCAA", "strand2": "AUGCCGCGUUAUGCUUACGGGGCGCAGGGUU", "bp_type": "..||||||||..||..||||..|.||.|||.", "helix_form": ".xAAAAAAAA..Ax..AAA.x.xx.x..xx", "helical_rise": 2.990, "helical_rise_std": 1.451, "helical_radius": 9.749, "helical_radius_std": 3.357, "helical_axis": [ -0.017, -0.954, -0.298 ], "point1": [ 168.750, 274.608, 167.384 ], "point2": [ 167.208, 189.435, 140.758 ], "num_pairs": 31, "pairs": [ { "index": 1, "nt1": "///2/971", "nt2": "///2/955", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.270, -3.399, 0.522, 8.393, 27.751, -7.590 ], "step_params": [ -3.451, -0.738, 3.848, -18.957, 3.047, -5.009 ], "heli_params": [ 1.560, -13.648, -2.207, -11.983, -74.559, -19.837 ], "bp2_params": [ -4.524, -1.684, -1.258, -16.492, -23.072, -46.142 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.848, "simple_Twist": 58.469, "simple_hRise": 4.627, "simple_hTwist": 61.275 }, { "index": 2, "nt1": "///2/972", "nt2": "///2/954", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.524, -1.684, -1.258, -16.492, -23.072, -46.142 ], "step_params": [ 1.457, -2.080, 7.497, -12.237, 4.128, 82.047 ], "heli_params": [ -1.799, -1.777, 7.173, 3.127, 9.270, 82.880 ], "bp2_params": [ 0.565, 0.734, -0.624, -19.981, 11.086, 5.837 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 7.497, "simple_Twist": 56.133, "simple_hRise": 6.914, "simple_hTwist": 57.481 }, { "index": 3, "nt1": "///2/974", "nt2": "///2/952", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.565, 0.734, -0.624, -19.981, 11.086, 5.837 ], "step_params": [ 0.222, -1.485, 2.491, -8.453, 12.886, 31.518 ], "heli_params": [ -3.772, -1.224, 1.665, 22.143, 14.525, 34.998 ], "bp2_params": [ -0.162, -0.187, 0.676, -1.171, -1.438, 1.184 ], "groove_widths": [ 21.655, null, 11.296, null ], "simple_Rise": 2.491, "simple_Twist": 35.098, "simple_hRise": 1.761, "simple_hTwist": 38.235 }, { "index": 4, "nt1": "///2/975", "nt2": "///2/951", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.162, -0.187, 0.676, -1.171, -1.438, 1.184 ], "step_params": [ 0.100, -2.046, 3.063, 0.530, 8.509, 30.030 ], "heli_params": [ -5.185, -0.100, 2.408, 16.020, -0.999, 31.190 ], "bp2_params": [ -0.200, -0.145, 0.408, 0.877, 6.062, 2.872 ], "groove_widths": [ 20.120, 16.516, 16.590, 10.872 ], "simple_Rise": 3.063, "simple_Twist": 30.260, "simple_hRise": 2.414, "simple_hTwist": 31.411 }, { "index": 5, "nt1": "///2/976", "nt2": "///2/950", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.145, 0.408, 0.877, 6.062, 2.872 ], "step_params": [ 0.159, -1.770, 3.455, 1.944, 2.234, 32.615 ], "heli_params": [ -3.540, 0.066, 3.333, 3.968, -3.452, 32.745 ], "bp2_params": [ 0.179, -0.182, 0.607, 4.305, 1.815, 1.290 ], "groove_widths": [ 18.215, 16.234, 16.334, 10.717 ], "simple_Rise": 3.455, "simple_Twist": 30.290, "simple_hRise": 3.322, "simple_hTwist": 30.431 }, { "index": 6, "nt1": "///2/977", "nt2": "///2/949", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.179, -0.182, 0.607, 4.305, 1.815, 1.290 ], "step_params": [ 0.003, -1.918, 3.489, 15.996, 22.403, 32.199 ], "heli_params": [ -4.778, 1.502, 1.700, 33.737, -24.089, 42.124 ], "bp2_params": [ 0.746, 0.361, -1.234, -9.535, -13.040, -5.315 ], "groove_widths": [ 17.757, 16.098, 17.075, 13.988 ], "simple_Rise": 3.489, "simple_Twist": 29.247, "simple_hRise": 1.527, "simple_hTwist": 39.957 }, { "index": 7, "nt1": "///2/978", "nt2": "///2/948", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.746, 0.361, -1.234, -9.535, -13.040, -5.315 ], "step_params": [ 0.321, -1.618, 3.391, -2.971, -0.611, 29.476 ], "heli_params": [ -3.030, -1.279, 3.375, -1.197, 5.820, 29.629 ], "bp2_params": [ 0.208, -0.177, -0.555, -4.678, -6.334, 2.213 ], "groove_widths": [ 17.189, 15.548, 17.146, 14.207 ], "simple_Rise": 3.391, "simple_Twist": 32.293, "simple_hRise": 3.378, "simple_hTwist": 32.432 }, { "index": 8, "nt1": "///2/979", "nt2": "///2/947", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.208, -0.177, -0.555, -4.678, -6.334, 2.213 ], "step_params": [ -0.054, -1.438, 2.939, -6.674, 13.790, 32.009 ], "heli_params": [ -4.024, -0.713, 2.130, 23.406, 11.328, 35.400 ], "bp2_params": [ 0.053, -0.125, 0.523, -5.820, 7.542, 0.704 ], "groove_widths": [ 17.716, 16.202, 16.801, 13.858 ], "simple_Rise": 2.939, "simple_Twist": 32.984, "simple_hRise": 2.158, "simple_hTwist": 36.279 }, { "index": 9, "nt1": "///2/980", "nt2": "///2/946", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.053, -0.125, 0.523, -5.820, 7.542, 0.704 ], "step_params": [ -0.588, -1.434, 3.027, -0.142, 6.489, 33.633 ], "heli_params": [ -3.341, 0.979, 2.714, 11.087, 0.243, 34.235 ], "bp2_params": [ 0.076, -0.118, 0.657, 0.535, 4.865, -2.925 ], "groove_widths": [ 18.471, 17.181, 14.185, 11.886 ], "simple_Rise": 3.027, "simple_Twist": 33.324, "simple_hRise": 2.711, "simple_hTwist": 33.932 }, { "index": 10, "nt1": "///2/981", "nt2": "///2/945", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.076, -0.118, 0.657, 0.535, 4.865, -2.925 ], "step_params": [ -0.489, -1.748, 3.191, 2.935, 5.272, 28.786 ], "heli_params": [ -4.486, 1.543, 2.771, 10.458, -5.823, 29.399 ], "bp2_params": [ -1.396, 1.146, 0.378, 1.788, 2.041, -18.972 ], "groove_widths": [ 18.505, 17.534, 14.953, 13.883 ], "simple_Rise": 3.191, "simple_Twist": 35.587, "simple_hRise": 2.863, "simple_hTwist": 36.079 }, { "index": 11, "nt1": "///2/982", "nt2": "///2/944", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.396, 1.146, 0.378, 1.788, 2.041, -18.972 ], "step_params": [ -2.088, -1.865, 3.166, 2.011, 3.313, 42.500 ], "heli_params": [ -2.873, 3.058, 2.923, 4.559, -2.768, 42.668 ], "bp2_params": [ 1.918, 1.788, 0.132, -0.116, 2.568, -50.757 ], "groove_widths": [ 18.052, 17.388, 14.859, 13.744 ], "simple_Rise": 3.166, "simple_Twist": 28.389, "simple_hRise": 2.784, "simple_hTwist": 28.647 }, { "index": 12, "nt1": "///2/983", "nt2": "///2/943", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cW.", "DSSR": "cW-.", "bp1_params": [ 1.918, 1.788, 0.132, -0.116, 2.568, -50.757 ], "step_params": [ 2.787, -1.086, 3.530, -0.601, 5.256, 20.532 ], "heli_params": [ -5.190, -7.832, 3.076, 14.439, 1.651, 21.195 ], "bp2_params": [ 0.235, -0.111, -0.519, 4.801, -5.939, 2.952 ], "groove_widths": [ 18.739, 17.669, 14.672, 13.906 ], "simple_Rise": 3.530, "simple_Twist": 27.196, "simple_hRise": 3.206, "simple_hTwist": 27.697 }, { "index": 13, "nt1": "///2/984", "nt2": "///2/942", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.235, -0.111, -0.519, 4.801, -5.939, 2.952 ], "step_params": [ -0.449, -0.938, 3.717, 0.310, 3.407, 32.343 ], "heli_params": [ -2.344, 0.863, 3.597, 6.095, -0.554, 32.519 ], "bp2_params": [ -0.189, -0.157, -0.432, 3.399, -3.243, 0.062 ], "groove_widths": [ 18.004, 16.251, 15.446, 14.342 ], "simple_Rise": 3.717, "simple_Twist": 34.476, "simple_hRise": 3.606, "simple_hTwist": 34.641 }, { "index": 14, "nt1": "///2/985", "nt2": "///2/941", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.189, -0.157, -0.432, 3.399, -3.243, 0.062 ], "step_params": [ 0.631, -2.648, 3.341, 1.499, 2.783, 28.876 ], "heli_params": [ -5.886, -0.933, 3.106, 5.561, -2.994, 29.045 ], "bp2_params": [ -0.659, -1.641, -0.608, 7.019, -3.439, 5.995 ], "groove_widths": [ 16.269, 14.268, 17.120, 16.053 ], "simple_Rise": 3.341, "simple_Twist": 32.297, "simple_hRise": 3.134, "simple_hTwist": 32.447 }, { "index": 15, "nt1": "///2/1002", "nt2": "///2/940", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.659, -1.641, -0.608, 7.019, -3.439, 5.995 ], "step_params": [ -1.545, -1.899, 3.435, -0.527, 6.381, 34.101 ], "heli_params": [ -4.167, 2.511, 3.063, 10.763, 0.889, 34.680 ], "bp2_params": [ -1.848, -1.490, -0.819, 3.859, 2.160, -18.194 ], "groove_widths": [ 16.337, 14.469, 18.056, 17.818 ], "simple_Rise": 3.435, "simple_Twist": 40.496, "simple_hRise": 3.132, "simple_hTwist": 40.979 }, { "index": 16, "nt1": "///2/1003", "nt2": "///2/939", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.848, -1.490, -0.819, 3.859, 2.160, -18.194 ], "step_params": [ 1.057, -1.764, 3.590, 0.861, 1.797, 35.548 ], "heli_params": [ -3.169, -1.593, 3.523, 2.941, -1.409, 35.602 ], "bp2_params": [ -0.110, -0.094, -0.625, 5.728, -1.352, 0.610 ], "groove_widths": [ 16.814, 15.159, 15.001, 13.932 ], "simple_Rise": 3.590, "simple_Twist": 25.325, "simple_hRise": 3.491, "simple_hTwist": 25.402 }, { "index": 17, "nt1": "///2/1004", "nt2": "///2/938", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.110, -0.094, -0.625, 5.728, -1.352, 0.610 ], "step_params": [ -0.287, -1.869, 3.210, -11.417, 17.500, 31.977 ], "heli_params": [ -4.792, -0.815, 1.959, 28.307, 18.468, 38.049 ], "bp2_params": [ -0.211, -0.180, 0.507, -3.677, 3.314, 1.872 ], "groove_widths": [ 17.429, 15.762, 15.782, 13.223 ], "simple_Rise": 3.210, "simple_Twist": 32.578, "simple_hRise": 1.985, "simple_hTwist": 38.550 }, { "index": 18, "nt1": "///2/1005", "nt2": "///2/937", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.211, -0.180, 0.507, -3.677, 3.314, 1.872 ], "step_params": [ -0.377, -1.976, 3.311, -1.083, 2.299, 32.826 ], "heli_params": [ -3.875, 0.481, 3.180, 4.060, 1.913, 32.922 ], "bp2_params": [ 0.178, -0.140, 0.280, -1.542, 6.532, 1.807 ], "groove_widths": [ 17.798, 16.077, 16.507, 13.146 ], "simple_Rise": 3.311, "simple_Twist": 30.492, "simple_hRise": 3.168, "simple_hTwist": 30.595 }, { "index": 19, "nt1": "///2/1006", "nt2": "///2/936", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.140, 0.280, -1.542, 6.532, 1.807 ], "step_params": [ -0.299, -1.824, 3.178, 1.296, 5.960, 34.879 ], "heli_params": [ -3.811, 0.668, 2.825, 9.850, -2.143, 35.392 ], "bp2_params": [ 0.160, -0.132, -0.123, 2.512, 7.271, -1.279 ], "groove_widths": [ 18.033, 16.462, 15.836, 12.986 ], "simple_Rise": 3.178, "simple_Twist": 35.269, "simple_hRise": 2.829, "simple_hTwist": 35.776 }, { "index": 20, "nt1": "///2/1007", "nt2": "///2/935", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.160, -0.132, -0.123, 2.512, 7.271, -1.279 ], "step_params": [ -0.502, -1.963, 3.307, 2.214, 4.019, 30.068 ], "heli_params": [ -4.520, 1.386, 2.982, 7.690, -4.237, 30.408 ], "bp2_params": [ 1.060, 1.259, -0.233, 6.074, 5.006, -11.230 ], "groove_widths": [ 17.942, 16.428, 17.869, 17.100 ], "simple_Rise": 3.307, "simple_Twist": 26.107, "simple_hRise": 2.925, "simple_hTwist": 26.500 }, { "index": 21, "nt1": "///2/1008", "nt2": "///2/934", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.060, 1.259, -0.233, 6.074, 5.006, -11.230 ], "step_params": [ 0.520, -2.874, 3.950, 2.142, 2.544, 28.244 ], "heli_params": [ -6.536, -0.482, 3.711, 5.190, -4.370, 28.435 ], "bp2_params": [ -0.044, 1.961, -0.462, -1.157, -3.127, -18.635 ], "groove_widths": [ 20.982, 16.235, 18.302, 16.984 ], "simple_Rise": 3.950, "simple_Twist": 33.295, "simple_hRise": 3.752, "simple_hTwist": 33.456 }, { "index": 22, "nt1": "///2/1009", "nt2": "///2/932", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.044, 1.961, -0.462, -1.157, -3.127, -18.635 ], "step_params": [ 0.321, -1.241, 3.508, -6.603, 5.315, 29.250 ], "heli_params": [ -3.460, -1.972, 3.095, 10.255, 12.743, 30.428 ], "bp2_params": [ -0.128, 0.207, 0.244, 6.895, -17.926, -8.557 ], "groove_widths": [ 24.577, 16.529, 16.313, 16.276 ], "simple_Rise": 3.508, "simple_Twist": 29.911, "simple_hRise": 3.107, "simple_hTwist": 31.063 }, { "index": 23, "nt1": "///2/1010", "nt2": "///2/931", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.128, 0.207, 0.244, 6.895, -17.926, -8.557 ], "step_params": [ -1.390, -2.241, 8.564, 3.224, 12.227, 78.606 ], "heli_params": [ -2.600, 1.311, 8.152, 9.594, -2.530, 79.454 ], "bp2_params": [ 0.595, 0.461, 1.626, 7.137, -10.047, 17.804 ], "groove_widths": [ 24.167, 16.211, 11.104, 11.090 ], "simple_Rise": 8.564, "simple_Twist": 74.556, "simple_hRise": 8.115, "simple_hTwist": 75.466 }, { "index": 24, "nt1": "///2/1013", "nt2": "///2/929", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.595, 0.461, 1.626, 7.137, -10.047, 17.804 ], "step_params": [ 1.123, -2.100, 4.780, -19.517, 31.641, 50.664 ], "heli_params": [ -3.904, -2.241, 2.637, 32.485, 20.038, 62.105 ], "bp2_params": [ -0.176, -0.165, 0.613, -2.534, -0.142, 1.537 ], "groove_widths": [ 25.316, 17.039, 7.856, 7.784 ], "simple_Rise": 4.780, "simple_Twist": 54.804, "simple_hRise": 2.827, "simple_hTwist": 65.405 }, { "index": 25, "nt1": "///2/1014", "nt2": "///2/927", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.176, -0.165, 0.613, -2.534, -0.142, 1.537 ], "step_params": [ -0.049, -1.555, 3.410, 2.810, 1.635, 38.866 ], "heli_params": [ -2.533, 0.423, 3.333, 2.452, -4.214, 38.996 ], "bp2_params": [ 2.296, 0.542, 0.652, 1.654, 2.798, -0.416 ], "groove_widths": [ 24.273, 17.124, 14.789, 9.875 ], "simple_Rise": 3.410, "simple_Twist": 26.327, "simple_hRise": 3.286, "simple_hTwist": 26.523 }, { "index": 26, "nt1": "///2/1015", "nt2": "///2/926", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.296, 0.542, 0.652, 1.654, 2.798, -0.416 ], "step_params": [ -1.113, -1.995, 2.895, 16.791, -1.130, 29.584 ], "heli_params": [ -3.270, 4.095, 2.059, -2.021, -30.019, 33.943 ], "bp2_params": [ -1.020, 0.332, -1.356, 16.943, -3.394, 4.559 ], "groove_widths": [ 18.714, 15.340, 16.680, 12.946 ], "simple_Rise": 2.895, "simple_Twist": 46.666, "simple_hRise": 2.428, "simple_hTwist": 49.447 }, { "index": 27, "nt1": "///2/1017", "nt2": "///2/925", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.020, 0.332, -1.356, 16.943, -3.394, 4.559 ], "step_params": [ -0.225, -1.372, 3.949, 0.889, 2.787, 41.649 ], "heli_params": [ -2.275, 0.427, 3.848, 3.914, -1.249, 41.748 ], "bp2_params": [ 1.906, -0.430, -0.857, 6.292, -6.039, -1.413 ], "groove_widths": [ 18.968, 13.006, 15.692, 14.820 ], "simple_Rise": 3.949, "simple_Twist": 25.727, "simple_hRise": 3.772, "simple_hTwist": 25.890 }, { "index": 28, "nt1": "///2/1018", "nt2": "///2/924", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.906, -0.430, -0.857, 6.292, -6.039, -1.413 ], "step_params": [ -0.279, -2.016, 3.207, -2.797, 26.659, 29.736 ], "heli_params": [ -5.327, 0.161, 1.116, 42.647, 4.474, 39.831 ], "bp2_params": [ 0.210, -0.145, 0.086, -3.224, 22.077, 1.135 ], "groove_widths": [ 19.656, null, 23.513, null ], "simple_Rise": 3.207, "simple_Twist": 38.988, "simple_hRise": 1.601, "simple_hTwist": 47.017 }, { "index": 29, "nt1": "///2/1019", "nt2": "///2/923", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.210, -0.145, 0.086, -3.224, 22.077, 1.135 ], "step_params": [ 0.325, -2.250, 3.630, 28.254, 21.305, -125.209 ], "heli_params": [ 1.058, 0.437, 3.756, -11.899, 15.780, -128.001 ], "bp2_params": [ 0.039, -0.499, -1.872, -18.942, -30.257, 9.277 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.630, "simple_Twist": -123.007, "simple_hRise": 3.760, "simple_hTwist": -125.930 }, { "index": 30, "nt1": "///2/922", "nt2": "///2/1022", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.039, -0.499, -1.872, -18.942, -30.257, 9.277 ], "step_params": [ 2.496, 3.185, 5.040, 2.377, -31.509, 36.502 ], "heli_params": [ 7.020, -2.839, 1.984, -41.979, -3.166, 47.923 ], "bp2_params": [ -3.350, -1.005, 0.602, 5.915, -1.361, -102.633 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.040, "simple_Twist": 15.885, "simple_hRise": -0.361, "simple_hTwist": 35.275 }, { "index": 31, "nt1": "///2/920", "nt2": "///2/1021", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W" } ] }, { "index": 30, "num_stems": 1, "strand1": "AAGCG", "strand2": "AGCGA", "bp_type": "..||.", "helix_form": "xxA.", "helical_rise": 3.748, "helical_rise_std": 0.299, "helical_radius": 9.227, "helical_radius_std": 2.523, "helical_axis": [ 0.479, -0.786, -0.392 ], "point1": [ 167.396, 226.219, 168.370 ], "point2": [ 174.688, 214.258, 162.403 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/990", "nt2": "///2/1001", "bp": "A+A", "name": "--", "Saenger": "01-I", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 2.381, 1.537, -0.226, 19.515, -5.587, -177.737 ], "step_params": [ 2.230, -0.313, 3.359, 6.689, 5.915, 118.479 ], "heli_params": [ -0.242, -1.228, 3.423, 3.439, -3.889, 118.686 ], "bp2_params": [ 0.606, 3.819, -0.829, 4.176, 8.429, -100.801 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.359, "simple_Twist": 5.147, "simple_hRise": 2.947, "simple_hTwist": 10.304 }, { "index": 2, "nt1": "///2/992", "nt2": "///2/933", "bp": "A+G", "name": "--", "Saenger": "09-IX", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ 0.606, 3.819, -0.829, 4.176, 8.429, -100.801 ], "step_params": [ -1.358, -0.242, 3.440, -0.443, 5.463, -19.572 ], "heli_params": [ -1.924, -4.062, 3.350, -15.676, -1.270, -20.317 ], "bp2_params": [ -0.180, -0.145, -0.336, -1.637, 0.477, -0.307 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.440, "simple_Twist": 30.757, "simple_hRise": 3.367, "simple_hTwist": 31.230 }, { "index": 3, "nt1": "///2/993", "nt2": "///2/1000", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.180, -0.145, -0.336, -1.637, 0.477, -0.307 ], "step_params": [ -0.092, -1.517, 3.633, -0.740, 1.301, 31.638 ], "heli_params": [ -3.043, 0.018, 3.571, 2.385, 1.356, 31.673 ], "bp2_params": [ 0.188, -0.163, -0.450, 1.914, 0.508, 0.106 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.633, "simple_Twist": 29.528, "simple_hRise": 3.566, "simple_hTwist": 29.565 }, { "index": 4, "nt1": "///2/994", "nt2": "///2/999", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.188, -0.163, -0.450, 1.914, 0.508, 0.106 ], "step_params": [ -3.944, -1.842, 3.205, -2.637, -2.419, 59.098 ], "heli_params": [ -1.740, 3.856, 3.429, -2.450, 2.671, 59.196 ], "bp2_params": [ 7.787, -4.849, -0.416, 22.714, 9.738, -52.017 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.205, "simple_Twist": 10.730, "simple_hRise": 4.351, "simple_hTwist": 11.310 }, { "index": 5, "nt1": "///2/995", "nt2": "///2/998", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 31, "num_stems": 2, "strand1": "AAUCAAGAACGA", "strand2": "UUGAUGCUCGAU", "bp_type": "|||...||.|..", "helix_form": "......A.Axx", "helical_rise": 3.189, "helical_rise_std": 0.656, "helical_radius": 8.714, "helical_radius_std": 2.759, "helical_axis": [ 0.229, 0.955, 0.190 ], "point1": [ 185.943, 188.892, 150.826 ], "point2": [ 194.031, 222.665, 157.534 ], "num_pairs": 12, "pairs": [ { "index": 1, "nt1": "///2/1023", "nt2": "///2/682", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.028, -0.100, -0.117, 0.392, -0.837, 5.597 ], "step_params": [ -1.323, -1.808, 3.131, 2.327, 15.772, 28.480 ], "heli_params": [ -5.445, 2.688, 1.797, 29.334, -4.329, 32.558 ], "bp2_params": [ -1.224, 0.128, -1.098, 4.599, 12.213, -2.833 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.131, "simple_Twist": 34.574, "simple_hRise": 2.053, "simple_hTwist": 37.971 }, { "index": 2, "nt1": "///2/1024", "nt2": "///2/681", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.224, 0.128, -1.098, 4.599, 12.213, -2.833 ], "step_params": [ -0.434, -1.063, 3.529, 6.941, 5.392, 35.725 ], "heli_params": [ -2.453, 1.677, 3.203, 8.630, -11.108, 36.756 ], "bp2_params": [ 1.360, 0.204, -1.610, 14.885, 3.871, -11.368 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.529, "simple_Twist": 22.736, "simple_hRise": 2.943, "simple_hTwist": 24.355 }, { "index": 3, "nt1": "///2/1025", "nt2": "///2/680", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.360, 0.204, -1.610, 14.885, 3.871, -11.368 ], "step_params": [ -0.256, -1.802, 3.855, 2.830, 1.833, 52.111 ], "heli_params": [ -2.189, 0.509, 3.777, 2.084, -3.217, 52.213 ], "bp2_params": [ 5.813, -3.901, -1.293, 13.777, -12.011, -39.681 ], "groove_widths": [ 17.593, null, 10.859, null ], "simple_Rise": 3.855, "simple_Twist": 22.969, "simple_hRise": 3.644, "simple_hTwist": 23.212 }, { "index": 4, "nt1": "///2/1026", "nt2": "///2/679", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 5.813, -3.901, -1.293, 13.777, -12.011, -39.681 ], "step_params": [ -4.756, -1.509, 4.293, 2.555, 27.571, 7.123 ], "heli_params": [ -8.508, 10.142, -0.798, 75.530, -6.998, 28.573 ], "bp2_params": [ -3.806, -1.897, -1.262, 4.282, -1.072, -99.950 ], "groove_widths": [ 17.694, 15.001, 7.805, 7.182 ], "simple_Rise": 4.293, "simple_Twist": 66.195, "simple_hRise": 3.361, "simple_hTwist": 71.140 }, { "index": 5, "nt1": "///2/1027", "nt2": "///2/678", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.806, -1.897, -1.262, 4.282, -1.072, -99.950 ], "step_params": [ 5.649, -2.000, 3.878, -12.729, 13.027, 39.516 ], "heli_params": [ -3.778, -8.693, 1.380, 18.146, 17.730, 43.359 ], "bp2_params": [ -6.757, -3.496, -0.632, 0.678, -1.290, -8.604 ], "groove_widths": [ 17.672, 15.423, 6.897, 6.051 ], "simple_Rise": 3.878, "simple_Twist": 58.042, "simple_hRise": 2.253, "simple_hTwist": 60.594 }, { "index": 6, "nt1": "///2/1028", "nt2": "///2/677", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.757, -3.496, -0.632, 0.678, -1.290, -8.604 ], "step_params": [ 0.797, -0.919, 3.750, 1.640, 0.398, 58.168 ], "heli_params": [ -0.969, -0.720, 3.763, 0.409, -1.687, 58.190 ], "bp2_params": [ 0.298, 0.214, -0.793, 1.148, -3.471, -0.337 ], "groove_widths": [ 17.205, 15.255, 11.646, 10.691 ], "simple_Rise": 3.750, "simple_Twist": 15.100, "simple_hRise": 3.789, "simple_hTwist": 15.193 }, { "index": 7, "nt1": "///2/1029", "nt2": "///2/676", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.298, 0.214, -0.793, 1.148, -3.471, -0.337 ], "step_params": [ 0.177, -1.871, 3.415, -4.172, 9.854, 33.537 ], "heli_params": [ -4.514, -0.892, 2.733, 16.562, 7.011, 35.156 ], "bp2_params": [ 0.917, 0.111, -0.498, -5.503, 16.353, 5.021 ], "groove_widths": [ 17.339, 15.667, 16.192, 14.742 ], "simple_Rise": 3.415, "simple_Twist": 30.162, "simple_hRise": 2.641, "simple_hTwist": 31.963 }, { "index": 8, "nt1": "///2/1030", "nt2": "///2/675", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.917, 0.111, -0.498, -5.503, 16.353, 5.021 ], "step_params": [ -0.920, -1.964, 3.342, -0.944, 1.870, 19.878 ], "heli_params": [ -6.530, 2.211, 3.185, 5.397, 2.726, 19.987 ], "bp2_params": [ -1.585, -0.076, -0.303, 0.705, 16.724, -2.799 ], "groove_widths": [ 17.941, 16.498, 17.372, 16.395 ], "simple_Rise": 3.342, "simple_Twist": 33.083, "simple_hRise": 3.253, "simple_hTwist": 33.148 }, { "index": 9, "nt1": "///2/1031", "nt2": "///2/674", "bp": "A-C", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.585, -0.076, -0.303, 0.705, 16.724, -2.799 ], "step_params": [ 0.350, -1.569, 3.279, 0.926, 4.361, 36.882 ], "heli_params": [ -3.032, -0.430, 3.088, 6.863, -1.456, 37.142 ], "bp2_params": [ 0.148, -0.153, -0.524, 8.334, 7.120, -0.511 ], "groove_widths": [ 17.852, null, 27.857, null ], "simple_Rise": 3.279, "simple_Twist": 27.510, "simple_hRise": 3.009, "simple_hTwist": 27.862 }, { "index": 10, "nt1": "///2/1032", "nt2": "///2/673", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.148, -0.153, -0.524, 8.334, 7.120, -0.511 ], "step_params": [ 1.599, -2.261, 3.578, 1.029, 4.086, 7.612 ], "heli_params": [ -24.530, -8.117, 2.260, 28.115, -7.078, 8.699 ], "bp2_params": [ 3.878, 4.386, -0.174, 5.445, -0.914, 89.038 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.578, "simple_Twist": -15.683, "simple_hRise": 3.922, "simple_hTwist": -16.236 }, { "index": 11, "nt1": "///2/1033", "nt2": "///2/1084", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "bp1_params": [ 3.878, 4.386, -0.174, 5.445, -0.914, 89.038 ], "step_params": [ -8.099, -1.261, 3.167, -31.603, 42.194, 34.799 ], "heli_params": [ -4.469, 5.373, 4.968, 47.134, 35.303, 62.473 ], "bp2_params": [ -4.040, -1.931, -0.838, 22.411, -2.703, -80.749 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.167, "simple_Twist": 82.603, "simple_hRise": 4.561, "simple_hTwist": 95.380 }, { "index": 12, "nt1": "///2/1034", "nt2": "///2/1081", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W" } ] }, { "index": 32, "num_stems": 1, "strand1": "GUCGGA", "strand2": "CAGCCU", "bp_type": "||||||", "helix_form": ".A.AA", "helical_rise": 2.138, "helical_rise_std": 0.294, "helical_radius": 9.332, "helical_radius_std": 0.555, "helical_axis": [ 0.192, 0.961, 0.199 ], "point1": [ 189.826, 231.392, 154.852 ], "point2": [ 191.849, 241.532, 156.948 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/1037", "nt2": "///2/1078", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.173, -0.396, 1.671, 17.101, 9.300, 5.039 ], "step_params": [ -1.029, -2.973, 3.383, 6.106, 3.643, 26.235 ], "heli_params": [ -7.190, 3.633, 2.650, 7.845, -13.148, 27.165 ], "bp2_params": [ 0.022, -0.181, 0.569, 13.409, 4.211, 5.357 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.383, "simple_Twist": 25.120, "simple_hRise": 2.614, "simple_hTwist": 26.091 }, { "index": 2, "nt1": "///2/1038", "nt2": "///2/1077", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.022, -0.181, 0.569, 13.409, 4.211, 5.357 ], "step_params": [ -0.777, -1.833, 3.099, 8.699, 6.304, 38.726 ], "heli_params": [ -3.304, 2.006, 2.555, 9.290, -12.820, 40.133 ], "bp2_params": [ 0.830, -0.452, -0.499, 9.635, -15.310, -6.619 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.099, "simple_Twist": 34.813, "simple_hRise": 2.481, "simple_hTwist": 36.384 }, { "index": 3, "nt1": "///2/1039", "nt2": "///2/1076", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.830, -0.452, -0.499, 9.635, -15.310, -6.619 ], "step_params": [ -0.756, -2.247, 3.711, -3.334, 29.601, 22.727 ], "heli_params": [ -6.772, 0.815, 0.593, 53.132, 5.985, 37.311 ], "bp2_params": [ -0.161, -0.126, -0.483, -7.607, 2.282, 0.009 ], "groove_widths": [ 18.012, null, 17.000, null ], "simple_Rise": 3.711, "simple_Twist": 27.826, "simple_hRise": 1.028, "simple_hTwist": 40.546 }, { "index": 4, "nt1": "///2/1040", "nt2": "///2/1075", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.161, -0.126, -0.483, -7.607, 2.282, 0.009 ], "step_params": [ -0.137, -1.728, 3.123, -1.251, 5.353, 29.547 ], "heli_params": [ -4.332, 0.031, 2.777, 10.383, 2.425, 30.043 ], "bp2_params": [ -0.165, -0.217, -0.716, -0.213, 8.196, -1.866 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.123, "simple_Twist": 29.315, "simple_hRise": 2.774, "simple_hTwist": 29.815 }, { "index": 5, "nt1": "///2/1041", "nt2": "///2/1074", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.217, -0.716, -0.213, 8.196, -1.866 ], "step_params": [ 0.318, -1.440, 3.163, 1.331, 10.990, 34.600 ], "heli_params": [ -3.706, -0.342, 2.610, 17.918, -2.170, 36.276 ], "bp2_params": [ 0.217, 0.215, -0.586, 9.182, 0.671, 11.273 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.163, "simple_Twist": 32.582, "simple_hRise": 2.568, "simple_hTwist": 34.363 }, { "index": 6, "nt1": "///2/1042", "nt2": "///2/1073", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 33, "num_stems": 1, "strand1": "UCGAAGACGA", "strand2": "UGAUGCUGCC", "bp_type": ".|...||||.", "helix_form": ".....AAA.", "helical_rise": 2.844, "helical_rise_std": 0.447, "helical_radius": 8.432, "helical_radius_std": 2.176, "helical_axis": [ 0.437, 0.102, 0.894 ], "point1": [ 186.248, 243.434, 164.036 ], "point2": [ 197.343, 246.026, 186.705 ], "num_pairs": 10, "pairs": [ { "index": 1, "nt1": "///2/1046", "nt2": "///2/1072", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.076, -1.660, -0.182, -2.595, -6.111, -6.340 ], "step_params": [ 0.078, -1.256, 3.617, -0.031, 1.787, 45.410 ], "heli_params": [ -1.799, -0.104, 3.568, 2.314, 0.041, 45.444 ], "bp2_params": [ -0.685, 0.579, -0.461, -1.785, -2.383, 1.598 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.617, "simple_Twist": 30.634, "simple_hRise": 3.540, "simple_hTwist": 30.685 }, { "index": 2, "nt1": "///2/1047", "nt2": "///2/1071", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.685, 0.579, -0.461, -1.785, -2.383, 1.598 ], "step_params": [ -0.950, -0.784, 3.810, -1.737, 0.969, 60.549 ], "heli_params": [ -0.832, 0.844, 3.821, 0.961, 1.722, 60.578 ], "bp2_params": [ 6.704, -2.970, -0.239, 0.661, -0.770, -13.466 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.810, "simple_Twist": 18.314, "simple_hRise": 3.836, "simple_hTwist": 18.420 }, { "index": 3, "nt1": "///2/1048", "nt2": "///2/1070", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.704, -2.970, -0.239, 0.661, -0.770, -13.466 ], "step_params": [ -5.832, -1.253, 3.305, 2.896, 20.349, 4.202 ], "heli_params": [ -7.766, 16.635, -1.354, 77.787, -11.069, 20.975 ], "bp2_params": [ -3.162, -1.074, -1.244, 1.064, -3.538, -100.676 ], "groove_widths": [ 17.906, null, 9.190, null ], "simple_Rise": 3.305, "simple_Twist": 60.989, "simple_hRise": 2.565, "simple_hTwist": 64.042 }, { "index": 4, "nt1": "///2/1049", "nt2": "///2/1069", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.162, -1.074, -1.244, 1.064, -3.538, -100.676 ], "step_params": [ 6.247, -1.152, 3.761, -12.802, 6.993, 31.643 ], "heli_params": [ -2.738, -11.940, 0.965, 12.055, 22.069, 34.765 ], "bp2_params": [ -6.730, -3.645, -0.524, -0.618, -0.208, -0.374 ], "groove_widths": [ 17.896, 15.761, 9.545, 8.605 ], "simple_Rise": 3.761, "simple_Twist": 57.183, "simple_hRise": 2.294, "simple_hTwist": 58.861 }, { "index": 5, "nt1": "///2/1050", "nt2": "///2/1068", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.730, -3.645, -0.524, -0.618, -0.208, -0.374 ], "step_params": [ -0.095, -1.060, 3.508, 0.008, 1.600, 58.367 ], "heli_params": [ -1.177, 0.098, 3.481, 1.640, -0.008, 58.387 ], "bp2_params": [ -0.150, -0.144, -0.392, -0.956, -1.108, -0.106 ], "groove_widths": [ 17.399, 15.270, 11.937, 10.008 ], "simple_Rise": 3.508, "simple_Twist": 15.994, "simple_hRise": 3.386, "simple_hTwist": 16.073 }, { "index": 6, "nt1": "///2/1051", "nt2": "///2/1067", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.150, -0.144, -0.392, -0.956, -1.108, -0.106 ], "step_params": [ -0.334, -1.864, 3.107, -5.341, 9.786, 31.733 ], "heli_params": [ -4.631, -0.190, 2.463, 17.244, 9.412, 33.587 ], "bp2_params": [ 0.056, -0.084, 0.096, -0.039, 7.233, 1.397 ], "groove_widths": [ 17.523, 15.703, 15.074, 11.492 ], "simple_Rise": 3.107, "simple_Twist": 30.389, "simple_hRise": 2.429, "simple_hTwist": 32.324 }, { "index": 7, "nt1": "///2/1052", "nt2": "///2/1066", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.056, -0.084, 0.096, -0.039, 7.233, 1.397 ], "step_params": [ 0.929, -2.120, 3.275, -1.634, 4.075, 30.796 ], "heli_params": [ -4.697, -2.031, 2.925, 7.625, 3.057, 31.100 ], "bp2_params": [ 0.214, -0.181, 0.642, 4.444, 4.310, 3.955 ], "groove_widths": [ 18.045, null, 16.386, null ], "simple_Rise": 3.275, "simple_Twist": 29.787, "simple_hRise": 2.911, "simple_hTwist": 30.101 }, { "index": 8, "nt1": "///2/1053", "nt2": "///2/1065", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.214, -0.181, 0.642, 4.444, 4.310, 3.955 ], "step_params": [ -0.361, -1.860, 3.158, 12.187, 20.815, 32.721 ], "heli_params": [ -4.562, 1.618, 1.536, 32.085, -18.786, 40.453 ], "bp2_params": [ -0.167, -0.216, -0.866, -2.508, -1.395, 1.480 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.158, "simple_Twist": 34.917, "simple_hRise": 1.641, "simple_hTwist": 42.224 }, { "index": 9, "nt1": "///2/1054", "nt2": "///2/1064", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.216, -0.866, -2.508, -1.395, 1.480 ], "step_params": [ -1.898, -1.343, 3.853, 5.360, 2.541, 48.326 ], "heli_params": [ -1.852, 2.771, 3.565, 3.090, -6.518, 48.667 ], "bp2_params": [ 4.567, -0.307, -1.635, 1.586, 0.965, -25.962 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.853, "simple_Twist": 25.887, "simple_hRise": 3.256, "simple_hTwist": 26.547 }, { "index": 10, "nt1": "///2/1055", "nt2": "///2/1063", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cW.", "DSSR": "cW-." } ] }, { "index": 34, "num_stems": 5, "strand1": "CCCUGACCCGCCGGCAGCUUGG", "strand2": "GGGAUUGGGCGGCUAGCGGACC", "bp_type": "||||.|||||||||..||..||", "helix_form": "AAx...x...AAx...AAxxA", "helical_rise": 3.092, "helical_rise_std": 1.273, "helical_radius": 9.609, "helical_radius_std": 2.120, "helical_axis": [ 0.666, -0.477, 0.573 ], "point1": [ 128.594, 223.250, 144.386 ], "point2": [ 171.858, 192.254, 181.573 ], "num_pairs": 22, "pairs": [ { "index": 1, "nt1": "///2/1116", "nt2": "///z/268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.204, -0.095, -0.139, 3.894, -2.280, 2.672 ], "step_params": [ -0.320, -1.918, 3.196, 1.906, 2.192, 32.175 ], "heli_params": [ -3.818, 0.898, 3.039, 3.946, -3.431, 32.302 ], "bp2_params": [ 0.194, -0.138, -0.450, 2.676, -1.391, 0.124 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.196, "simple_Twist": 32.420, "simple_hRise": 3.040, "simple_hTwist": 32.546 }, { "index": 2, "nt1": "///2/1117", "nt2": "///z/267", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.194, -0.138, -0.450, 2.676, -1.391, 0.124 ], "step_params": [ -0.552, -1.595, 3.111, 2.138, 20.553, 23.021 ], "heli_params": [ -6.078, 1.357, 1.248, 42.187, -4.388, 30.842 ], "bp2_params": [ 0.065, -0.165, -0.581, 10.113, 13.850, -3.061 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.111, "simple_Twist": 23.128, "simple_hRise": 1.256, "simple_hTwist": 30.920 }, { "index": 3, "nt1": "///2/1118", "nt2": "///z/266", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.065, -0.165, -0.581, 10.113, 13.850, -3.061 ], "step_params": [ 2.805, -1.476, 7.205, 16.201, 9.317, 75.424 ], "heli_params": [ -1.786, -1.192, 7.400, 7.506, -13.052, 77.369 ], "bp2_params": [ -0.043, -0.100, -0.468, 7.434, -7.521, 1.711 ], "groove_widths": [ 21.350, null, 12.265, null ], "simple_Rise": 7.205, "simple_Twist": 76.649, "simple_hRise": 7.399, "simple_hTwist": 78.553 }, { "index": 4, "nt1": "///2/1120", "nt2": "///2/1113", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.043, -0.100, -0.468, 7.434, -7.521, 1.711 ], "step_params": [ 0.239, -1.957, 3.215, -8.838, 28.242, 16.050 ], "heli_params": [ -6.383, -1.350, -0.144, 59.307, 18.559, 33.579 ], "bp2_params": [ -3.819, -1.431, -0.467, 1.642, -2.151, -8.675 ], "groove_widths": [ 21.805, 13.710, 13.436, 12.310 ], "simple_Rise": 3.215, "simple_Twist": 37.025, "simple_hRise": 1.380, "simple_hTwist": 47.072 }, { "index": 5, "nt1": "///2/1121", "nt2": "///2/1112", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.819, -1.431, -0.467, 1.642, -2.151, -8.675 ], "step_params": [ 0.662, -1.720, 3.238, -5.143, 10.686, 50.891 ], "heli_params": [ -2.617, -1.071, 2.774, 12.245, 5.893, 52.165 ], "bp2_params": [ 0.078, -0.117, -0.340, -0.374, 6.952, 0.602 ], "groove_widths": [ 20.182, 14.316, 16.356, 11.367 ], "simple_Rise": 3.238, "simple_Twist": 29.336, "simple_hRise": 2.337, "simple_hTwist": 31.594 }, { "index": 6, "nt1": "///2/1122", "nt2": "///2/1111", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.078, -0.117, -0.340, -0.374, 6.952, 0.602 ], "step_params": [ 1.028, -2.387, 3.479, -11.548, 11.862, 38.344 ], "heli_params": [ -4.513, -2.571, 2.286, 17.120, 16.667, 41.642 ], "bp2_params": [ 1.476, -0.461, 1.234, -7.490, 17.175, 15.858 ], "groove_widths": [ 18.448, 15.829, 16.117, 13.719 ], "simple_Rise": 3.479, "simple_Twist": 30.001, "simple_hRise": 1.916, "simple_hTwist": 34.174 }, { "index": 7, "nt1": "///2/1123", "nt2": "///2/1110", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.476, -0.461, 1.234, -7.490, 17.175, 15.858 ], "step_params": [ 1.488, -2.532, 3.981, -6.559, 12.187, 35.351 ], "heli_params": [ -5.553, -3.182, 2.686, 19.185, 10.326, 37.882 ], "bp2_params": [ -0.565, 0.628, -0.290, 7.302, -4.471, 11.004 ], "groove_widths": [ 19.339, 15.694, 16.663, 11.345 ], "simple_Rise": 3.981, "simple_Twist": 46.814, "simple_hRise": 3.048, "simple_hTwist": 48.706 }, { "index": 8, "nt1": "///2/1124", "nt2": "///2/1108", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.565, 0.628, -0.290, 7.302, -4.471, 11.004 ], "step_params": [ -0.774, -1.491, 3.611, 0.291, 0.905, 34.994 ], "heli_params": [ -2.628, 1.335, 3.566, 1.504, -0.484, 35.006 ], "bp2_params": [ 0.191, -0.136, -0.398, 4.251, -5.905, 1.790 ], "groove_widths": [ 20.450, 16.231, 17.753, 12.149 ], "simple_Rise": 3.611, "simple_Twist": 30.927, "simple_hRise": 3.560, "simple_hTwist": 30.941 }, { "index": 9, "nt1": "///2/1125", "nt2": "///2/1107", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.191, -0.136, -0.398, 4.251, -5.905, 1.790 ], "step_params": [ 0.838, -2.478, 3.327, -1.193, 21.440, 15.677 ], "heli_params": [ -8.996, -2.025, -0.050, 54.190, 3.014, 26.533 ], "bp2_params": [ -1.926, -0.429, -0.150, -0.903, 0.686, -1.451 ], "groove_widths": [ 19.445, 16.281, 17.807, 13.687 ], "simple_Rise": 3.327, "simple_Twist": 27.241, "simple_hRise": 1.101, "simple_hTwist": 34.561 }, { "index": 10, "nt1": "///2/1126", "nt2": "///2/1106", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.926, -0.429, -0.150, -0.903, 0.686, -1.451 ], "step_params": [ 0.035, -1.635, 3.327, 1.798, 1.961, 41.596 ], "heli_params": [ -2.507, 0.142, 3.249, 2.758, -2.529, 41.677 ], "bp2_params": [ 0.159, -0.181, -0.700, 2.971, -0.451, 0.761 ], "groove_widths": [ 17.405, 15.251, 18.718, 14.539 ], "simple_Rise": 3.327, "simple_Twist": 30.171, "simple_hRise": 3.214, "simple_hTwist": 30.285 }, { "index": 11, "nt1": "///2/1127", "nt2": "///2/1105", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.159, -0.181, -0.700, 2.971, -0.451, 0.761 ], "step_params": [ 0.178, -1.648, 3.360, 0.539, 4.529, 29.395 ], "heli_params": [ -4.151, -0.235, 3.080, 8.858, -1.054, 29.739 ], "bp2_params": [ 0.201, -0.116, -0.054, 4.923, -6.771, 1.744 ], "groove_widths": [ 19.704, 16.041, 18.716, 14.210 ], "simple_Rise": 3.360, "simple_Twist": 29.324, "simple_hRise": 3.079, "simple_hTwist": 29.669 }, { "index": 12, "nt1": "///2/1128", "nt2": "///2/1104", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.116, -0.054, 4.923, -6.771, 1.744 ], "step_params": [ -0.337, -0.795, 3.221, 11.499, 28.881, 28.954 ], "heli_params": [ -3.753, 1.522, 1.613, 44.642, -17.775, 42.237 ], "bp2_params": [ -0.135, -0.419, -1.330, 8.844, -1.733, 1.793 ], "groove_widths": [ 22.189, 17.240, 12.655, 8.439 ], "simple_Rise": 3.221, "simple_Twist": 30.867, "simple_hRise": 1.710, "simple_hTwist": 43.537 }, { "index": 13, "nt1": "///2/1129", "nt2": "///2/1103", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.135, -0.419, -1.330, 8.844, -1.733, 1.793 ], "step_params": [ -0.014, -2.877, 6.521, -15.481, 41.572, 56.737 ], "heli_params": [ -5.108, -0.966, 3.803, 38.077, 14.180, 70.866 ], "bp2_params": [ -1.163, 0.830, -0.480, -7.692, -9.826, 5.118 ], "groove_widths": [ 22.042, 17.028, 14.519, 8.923 ], "simple_Rise": 6.521, "simple_Twist": 61.470, "simple_hRise": 4.063, "simple_hTwist": 74.513 }, { "index": 14, "nt1": "///2/1131", "nt2": "///2/1101", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.163, 0.830, -0.480, -7.692, -9.826, 5.118 ], "step_params": [ -2.572, -1.737, 2.843, -2.420, 1.991, 28.160 ], "heli_params": [ -3.955, 4.760, 2.922, 4.076, 4.954, 28.331 ], "bp2_params": [ -2.610, 1.438, -0.566, 3.129, -4.437, -27.837 ], "groove_widths": [ 21.466, 17.121, 16.057, 13.835 ], "simple_Rise": 2.843, "simple_Twist": 33.783, "simple_hRise": 2.911, "simple_hTwist": 33.923 }, { "index": 15, "nt1": "///2/1132", "nt2": "///2/1100", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.610, 1.438, -0.566, 3.129, -4.437, -27.837 ], "step_params": [ 1.013, -2.580, 3.482, -2.110, 13.649, 34.743 ], "heli_params": [ -5.685, -1.839, 2.280, 21.820, 3.374, 37.308 ], "bp2_params": [ 1.935, 1.810, -0.196, 8.169, -20.790, -17.557 ], "groove_widths": [ 19.135, 16.710, 19.517, 15.933 ], "simple_Rise": 3.482, "simple_Twist": 15.624, "simple_hRise": 0.836, "simple_hTwist": 20.825 }, { "index": 16, "nt1": "///2/1133", "nt2": "///2/1099", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.935, 1.810, -0.196, 8.169, -20.790, -17.557 ], "step_params": [ 0.175, -2.368, 3.657, -16.860, -2.352, 18.514 ], "heli_params": [ -4.654, -6.096, 2.811, -5.933, 42.522, 25.101 ], "bp2_params": [ -0.176, -0.165, 0.598, -0.188, -0.130, 1.003 ], "groove_widths": [ 17.249, 15.925, 19.523, 19.097 ], "simple_Rise": 3.657, "simple_Twist": 27.385, "simple_hRise": 3.205, "simple_hTwist": 32.159 }, { "index": 17, "nt1": "///2/1134", "nt2": "///2/1098", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.176, -0.165, 0.598, -0.188, -0.130, 1.003 ], "step_params": [ -0.476, -2.076, 3.273, -2.827, 2.612, 36.990 ], "heli_params": [ -3.598, 0.376, 3.151, 4.104, 4.441, 37.183 ], "bp2_params": [ 0.153, -0.184, 0.664, -2.476, 3.733, 1.729 ], "groove_widths": [ 17.504, 16.479, 23.250, 20.579 ], "simple_Rise": 3.273, "simple_Twist": 34.977, "simple_hRise": 3.142, "simple_hTwist": 35.182 }, { "index": 18, "nt1": "///2/1135", "nt2": "///2/1097", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.153, -0.184, 0.664, -2.476, 3.733, 1.729 ], "step_params": [ -1.009, -1.909, 3.149, 0.896, 3.397, 28.581 ], "heli_params": [ -4.540, 2.215, 2.875, 6.848, -1.807, 28.792 ], "bp2_params": [ 0.395, 0.031, 0.353, 2.718, 10.669, -4.253 ], "groove_widths": [ 18.916, 15.166, 7.899, 7.510 ], "simple_Rise": 3.149, "simple_Twist": 27.581, "simple_hRise": 2.864, "simple_hTwist": 27.799 }, { "index": 19, "nt1": "///2/1136", "nt2": "///2/1096", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.395, 0.031, 0.353, 2.718, 10.669, -4.253 ], "step_params": [ 1.017, -1.201, 3.297, -1.972, 12.809, -55.596 ], "heli_params": [ 0.513, 0.951, 3.505, -13.529, -2.083, -56.969 ], "bp2_params": [ -0.258, 0.320, -0.193, -0.259, -0.613, 169.533 ], "groove_widths": [ 20.162, null, 8.657, null ], "simple_Rise": 3.297, "simple_Twist": 59.552, "simple_hRise": 2.975, "simple_hTwist": 60.819 }, { "index": 20, "nt1": "///2/1137", "nt2": "///2/1148", "bp": "U+A", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ -0.258, 0.320, -0.193, -0.259, -0.613, 169.533 ], "step_params": [ -0.958, 1.607, 6.731, 10.577, -9.801, -171.909 ], "heli_params": [ -0.785, -0.458, 6.747, 4.913, 5.301, -171.973 ], "bp2_params": [ -0.108, -0.318, -1.065, -4.266, 6.684, -2.797 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.731, "simple_Twist": 75.688, "simple_hRise": 6.358, "simple_hTwist": 76.847 }, { "index": 21, "nt1": "///2/1140", "nt2": "///2/1147", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.108, -0.318, -1.065, -4.266, 6.684, -2.797 ], "step_params": [ 0.584, -1.603, 3.742, -0.530, 3.209, 26.036 ], "heli_params": [ -4.495, -1.445, 3.510, 7.087, 1.170, 26.235 ], "bp2_params": [ -0.148, -0.185, -0.625, 0.665, 10.635, -1.146 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.742, "simple_Twist": 26.328, "simple_hRise": 3.513, "simple_hTwist": 26.524 }, { "index": 22, "nt1": "///2/1141", "nt2": "///2/1146", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 35, "num_stems": 2, "strand1": "GGGGAUAGGUUG", "strand2": "UUCAAAGUCGAA", "bp_type": "|||....||||.", "helix_form": "....x.xA...", "helical_rise": 3.384, "helical_rise_std": 0.647, "helical_radius": 8.941, "helical_radius_std": 2.564, "helical_axis": [ 0.078, 0.757, -0.649 ], "point1": [ 208.111, 196.389, 182.022 ], "point2": [ 211.048, 224.750, 157.722 ], "num_pairs": 12, "pairs": [ { "index": 1, "nt1": "///2/1166", "nt2": "///2/1193", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.878, -0.116, -0.148, -10.460, -5.601, 0.975 ], "step_params": [ 0.440, -1.793, 3.549, -1.353, 1.163, 26.664 ], "heli_params": [ -4.203, -1.328, 3.443, 2.518, 2.930, 26.723 ], "bp2_params": [ -2.313, 0.238, -0.481, -10.294, -2.243, 9.047 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.549, "simple_Twist": 34.509, "simple_hRise": 3.470, "simple_hTwist": 34.553 }, { "index": 2, "nt1": "///2/1167", "nt2": "///2/1192", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.313, 0.238, -0.481, -10.294, -2.243, 9.047 ], "step_params": [ 0.363, -1.951, 3.097, 3.580, 5.732, 34.223 ], "heli_params": [ -4.044, -0.115, 2.767, 9.624, -6.011, 34.864 ], "bp2_params": [ -0.128, -0.179, -0.573, 2.610, 3.832, -1.229 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.097, "simple_Twist": 22.849, "simple_hRise": 2.563, "simple_hTwist": 23.815 }, { "index": 3, "nt1": "///2/1168", "nt2": "///2/1191", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.128, -0.179, -0.573, 2.610, 3.832, -1.229 ], "step_params": [ 0.500, -0.855, 3.413, 3.179, 2.768, 63.972 ], "heli_params": [ -0.930, -0.329, 3.397, 2.610, -2.997, 64.096 ], "bp2_params": [ 6.769, -3.922, -0.336, 8.828, -7.393, -2.832 ], "groove_widths": [ 20.492, null, 13.213, null ], "simple_Rise": 3.413, "simple_Twist": 18.845, "simple_hRise": 3.293, "simple_hTwist": 19.306 }, { "index": 4, "nt1": "///2/1169", "nt2": "///2/1190", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.769, -3.922, -0.336, 8.828, -7.393, -2.832 ], "step_params": [ 1.745, -0.421, 3.275, 6.313, 0.663, -63.678 ], "heli_params": [ 0.370, 1.914, 3.112, -0.627, 5.967, -63.960 ], "bp2_params": [ -5.814, 5.073, 0.600, -21.084, 0.334, -167.936 ], "groove_widths": [ 22.126, 19.849, 15.238, 14.624 ], "simple_Rise": 3.275, "simple_Twist": 6.207, "simple_hRise": 3.500, "simple_hTwist": 8.875 }, { "index": 5, "nt1": "///2/1170", "nt2": "///2/1189", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ -5.814, 5.073, 0.600, -21.084, 0.334, -167.936 ], "step_params": [ -0.649, -1.078, 3.961, -4.153, 7.200, 92.469 ], "heli_params": [ -0.908, 0.354, 3.909, 4.977, 2.871, 92.757 ], "bp2_params": [ 3.921, -2.365, 1.313, 1.797, -5.478, -99.494 ], "groove_widths": [ 20.184, 18.377, 18.140, 17.268 ], "simple_Rise": 3.961, "simple_Twist": 41.321, "simple_hRise": 3.775, "simple_hTwist": 42.113 }, { "index": 6, "nt1": "///2/1172", "nt2": "///2/1188", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 3.921, -2.365, 1.313, 1.797, -5.478, -99.494 ], "step_params": [ 4.712, -0.420, 3.333, 11.445, -4.662, -13.464 ], "heli_params": [ 2.589, 17.962, -0.584, 16.117, 39.568, -18.256 ], "bp2_params": [ -7.396, -3.823, -1.145, 9.370, -6.188, -4.917 ], "groove_widths": [ 20.281, 17.200, 18.042, 16.508 ], "simple_Rise": 3.333, "simple_Twist": 58.090, "simple_hRise": 4.133, "simple_hTwist": 59.278 }, { "index": 7, "nt1": "///2/1173", "nt2": "///2/1187", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -7.396, -3.823, -1.145, 9.370, -6.188, -4.917 ], "step_params": [ -1.778, -1.868, 5.601, -6.582, 23.494, 72.570 ], "heli_params": [ -2.688, 1.115, 5.018, 19.324, 5.414, 76.024 ], "bp2_params": [ -1.806, -0.159, -0.099, -4.485, 5.980, 5.823 ], "groove_widths": [ 20.127, 17.469, 9.546, 9.437 ], "simple_Rise": 5.601, "simple_Twist": 36.451, "simple_hRise": 4.001, "simple_hTwist": 43.631 }, { "index": 8, "nt1": "///2/1175", "nt2": "///2/1186", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.806, -0.159, -0.099, -4.485, 5.980, 5.823 ], "step_params": [ -0.138, -1.474, 3.482, -1.003, 1.303, 32.563 ], "heli_params": [ -2.866, 0.061, 3.425, 2.321, 1.787, 32.604 ], "bp2_params": [ -0.167, -0.123, -0.070, 0.448, 4.869, 0.886 ], "groove_widths": [ 18.765, 16.297, 11.123, 9.763 ], "simple_Rise": 3.482, "simple_Twist": 23.641, "simple_hRise": 3.400, "simple_hTwist": 23.698 }, { "index": 9, "nt1": "///2/1176", "nt2": "///2/1185", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.123, -0.070, 0.448, 4.869, 0.886 ], "step_params": [ 1.558, -1.373, 3.325, 0.274, 2.059, 42.831 ], "heli_params": [ -2.084, -2.104, 3.268, 2.817, -0.374, 42.879 ], "bp2_params": [ 2.453, -0.055, 0.174, 4.287, 2.575, 14.846 ], "groove_widths": [ 18.143, null, 18.687, null ], "simple_Rise": 3.325, "simple_Twist": 27.997, "simple_hRise": 3.232, "simple_hTwist": 28.073 }, { "index": 10, "nt1": "///2/1177", "nt2": "///2/1184", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.453, -0.055, 0.174, 4.287, 2.575, 14.846 ], "step_params": [ -0.028, -1.898, 2.818, 21.604, 19.916, 20.984 ], "heli_params": [ -4.983, 2.116, 0.606, 37.427, -40.600, 35.973 ], "bp2_params": [ -0.258, 0.333, -1.529, -1.263, -6.439, 12.080 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.818, "simple_Twist": 36.182, "simple_hRise": 1.425, "simple_hTwist": 46.298 }, { "index": 11, "nt1": "///2/1178", "nt2": "///2/1183", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.258, 0.333, -1.529, -1.263, -6.439, 12.080 ], "step_params": [ -3.206, -0.629, 2.469, -21.774, 17.938, 55.454 ], "heli_params": [ -1.376, 2.199, 3.112, 18.041, 21.899, 61.706 ], "bp2_params": [ 7.083, -5.650, 2.118, 20.167, 11.859, -10.256 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.469, "simple_Twist": 0.643, "simple_hRise": 2.130, "simple_hTwist": 28.218 }, { "index": 12, "nt1": "///2/1179", "nt2": "///2/1182", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 36, "num_stems": 1, "strand1": "CAAGGGCAC", "strand2": "UUUCCCGUC", "bp_type": ".|||||||.", "helix_form": "xAAAAA.x", "helical_rise": 2.714, "helical_rise_std": 0.657, "helical_radius": 9.607, "helical_radius_std": 2.052, "helical_axis": [ -0.629, 0.689, 0.359 ], "point1": [ 178.336, 215.933, 206.608 ], "point2": [ 164.708, 230.853, 214.375 ], "num_pairs": 9, "pairs": [ { "index": 1, "nt1": "///2/1206", "nt2": "///2/1692", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ -0.877, -0.439, 2.009, -29.354, -9.800, 122.725 ], "step_params": [ -2.481, 1.298, 4.216, -15.861, -4.343, -73.096 ], "heli_params": [ -0.904, -2.651, 3.751, 3.602, -13.155, -74.670 ], "bp2_params": [ 0.038, -0.142, -0.567, -1.964, -3.975, 2.267 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.216, "simple_Twist": 41.297, "simple_hRise": 4.669, "simple_hTwist": 44.318 }, { "index": 2, "nt1": "///2/1208", "nt2": "///2/1691", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.038, -0.142, -0.567, -1.964, -3.975, 2.267 ], "step_params": [ -0.397, -1.464, 3.427, -2.538, 3.328, 32.524 ], "heli_params": [ -3.183, 0.254, 3.286, 5.911, 4.509, 32.785 ], "bp2_params": [ 0.471, -0.169, 0.055, -4.814, -2.724, -5.580 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.427, "simple_Twist": 30.274, "simple_hRise": 3.273, "simple_hTwist": 30.555 }, { "index": 3, "nt1": "///2/1209", "nt2": "///2/1690", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.471, -0.169, 0.055, -4.814, -2.724, -5.580 ], "step_params": [ 1.021, -1.863, 3.118, 3.395, 3.825, 35.013 ], "heli_params": [ -3.595, -1.211, 2.987, 6.316, -5.606, 35.373 ], "bp2_params": [ 1.132, 0.486, 0.312, -3.037, -1.224, 1.526 ], "groove_widths": [ 17.182, null, 19.929, null ], "simple_Rise": 3.118, "simple_Twist": 32.120, "simple_hRise": 2.972, "simple_hTwist": 32.514 }, { "index": 4, "nt1": "///2/1210", "nt2": "///2/1689", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.132, 0.486, 0.312, -3.037, -1.224, 1.526 ], "step_params": [ 0.410, -2.337, 2.988, 0.838, 7.654, 25.400 ], "heli_params": [ -6.738, -0.713, 2.213, 16.917, -1.852, 26.523 ], "bp2_params": [ -0.203, -0.142, 0.332, 0.711, 8.298, 1.029 ], "groove_widths": [ 17.453, 15.717, 16.751, 16.396 ], "simple_Rise": 2.988, "simple_Twist": 31.857, "simple_hRise": 2.387, "simple_hTwist": 32.751 }, { "index": 5, "nt1": "///2/1211", "nt2": "///2/1688", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.203, -0.142, 0.332, 0.711, 8.298, 1.029 ], "step_params": [ -0.245, -1.853, 3.411, 7.078, 14.498, 34.194 ], "heli_params": [ -4.613, 1.231, 2.367, 23.129, -11.292, 37.706 ], "bp2_params": [ -0.186, -0.169, -0.703, -8.582, -4.409, 0.979 ], "groove_widths": [ 17.523, 15.615, 19.701, 18.423 ], "simple_Rise": 3.411, "simple_Twist": 34.090, "simple_hRise": 2.364, "simple_hTwist": 37.612 }, { "index": 6, "nt1": "///2/1212", "nt2": "///2/1687", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.186, -0.169, -0.703, -8.582, -4.409, 0.979 ], "step_params": [ -0.489, -1.112, 3.479, -2.804, 1.806, 32.031 ], "heli_params": [ -2.346, 0.352, 3.442, 3.261, 5.064, 32.200 ], "bp2_params": [ 0.147, -0.168, -0.501, -4.173, 1.167, -1.248 ], "groove_widths": [ 18.850, null, 18.049, null ], "simple_Rise": 3.479, "simple_Twist": 30.221, "simple_hRise": 3.439, "simple_hTwist": 30.400 }, { "index": 7, "nt1": "///2/1213", "nt2": "///2/1686", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.147, -0.168, -0.501, -4.173, 1.167, -1.248 ], "step_params": [ -1.374, -1.470, 3.013, -7.645, 11.942, 29.997 ], "heli_params": [ -4.374, 1.262, 2.529, 21.618, 13.840, 33.110 ], "bp2_params": [ 0.637, 0.294, 0.238, 8.706, -16.277, -11.235 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.013, "simple_Twist": 27.899, "simple_hRise": 2.477, "simple_hTwist": 31.232 }, { "index": 8, "nt1": "///2/1214", "nt2": "///2/1685", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.637, 0.294, 0.238, 8.706, -16.277, -11.235 ], "step_params": [ 0.248, 1.017, 2.662, -8.709, 4.265, -112.093 ], "heli_params": [ -0.652, 0.067, 2.645, -2.568, -5.244, -112.369 ], "bp2_params": [ 4.733, 0.714, 2.135, -23.228, 21.941, -44.061 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.662, "simple_Twist": -34.779, "simple_hRise": 2.512, "simple_hTwist": -36.065 }, { "index": 9, "nt1": "///2/1682", "nt2": "///2/1684", "bp": "C+C", "name": "--", "Saenger": "--", "LW": "c.H", "DSSR": "c.+M" } ] }, { "index": 37, "num_stems": 2, "strand1": "ACAGGAGUG", "strand2": "UGCCCUUAA", "bp_type": "||.|||||.", "helix_form": "AxxAA.A.", "helical_rise": 2.828, "helical_rise_std": 1.075, "helical_radius": 9.582, "helical_radius_std": 2.754, "helical_axis": [ 0.229, 0.951, 0.209 ], "point1": [ 161.475, 230.824, 222.131 ], "point2": [ 166.545, 251.904, 226.773 ], "num_pairs": 9, "pairs": [ { "index": 1, "nt1": "///2/1217", "nt2": "///2/1681", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.052, -0.092, 0.282, -2.432, -10.988, -1.579 ], "step_params": [ -0.397, -1.320, 3.694, -1.369, -2.589, 33.008 ], "heli_params": [ -1.815, 0.432, 3.796, -4.546, 2.404, 33.134 ], "bp2_params": [ 0.152, -0.132, -0.109, -5.525, -9.391, 0.010 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.694, "simple_Twist": 32.335, "simple_hRise": 3.798, "simple_hTwist": 32.464 }, { "index": 2, "nt1": "///2/1218", "nt2": "///2/1680", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.152, -0.132, -0.109, -5.525, -9.391, 0.010 ], "step_params": [ 0.817, -0.514, 7.763, -51.639, 16.928, -0.276 ], "heli_params": [ -2.402, -8.152, 0.977, -27.951, -85.267, -54.344 ], "bp2_params": [ -0.448, -1.716, -1.031, -1.112, -41.670, 156.835 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 7.763, "simple_Twist": 123.133, "simple_hRise": 7.311, "simple_hTwist": 129.877 }, { "index": 3, "nt1": "///2/1220", "nt2": "///2/1215", "bp": "A+C", "name": "~rWobble", "Saenger": "26-XXVI", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ -0.448, -1.716, -1.031, -1.112, -41.670, 156.835 ], "step_params": [ 0.763, -0.611, 2.767, -13.510, -1.525, 107.427 ], "heli_params": [ -0.361, -0.617, 2.697, -0.943, 8.359, 108.017 ], "bp2_params": [ -0.577, -0.548, 0.043, -8.647, -0.152, -0.655 ], "groove_widths": [ 25.479, null, 7.447, null ], "simple_Rise": 2.767, "simple_Twist": -11.666, "simple_hRise": 2.330, "simple_hTwist": -17.897 }, { "index": 4, "nt1": "///2/1221", "nt2": "///2/1645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.577, -0.548, 0.043, -8.647, -0.152, -0.655 ], "step_params": [ -0.773, -1.198, 3.547, 1.016, 1.849, 33.930 ], "heli_params": [ -2.365, 1.496, 3.455, 3.165, -1.738, 33.993 ], "bp2_params": [ -0.159, -0.190, -0.571, -2.818, 4.296, -1.010 ], "groove_widths": [ 25.817, 20.456, 16.091, 12.277 ], "simple_Rise": 3.547, "simple_Twist": 31.620, "simple_hRise": 3.447, "simple_hTwist": 31.689 }, { "index": 5, "nt1": "///2/1222", "nt2": "///2/1644", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.190, -0.571, -2.818, 4.296, -1.010 ], "step_params": [ 0.554, -1.311, 3.418, -1.678, 3.419, 31.202 ], "heli_params": [ -3.073, -1.344, 3.226, 6.327, 3.104, 31.428 ], "bp2_params": [ 0.088, -0.064, 0.066, 3.085, 2.957, -0.737 ], "groove_widths": [ 21.162, 18.393, 19.193, 18.998 ], "simple_Rise": 3.418, "simple_Twist": 29.917, "simple_hRise": 3.217, "simple_hTwist": 30.153 }, { "index": 6, "nt1": "///2/1223", "nt2": "///2/1643", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.088, -0.064, 0.066, 3.085, 2.957, -0.737 ], "step_params": [ 2.688, -2.776, 3.124, -0.513, 2.010, 12.895 ], "heli_params": [ -14.132, -12.309, 2.554, 8.874, 2.264, 13.060 ], "bp2_params": [ -1.401, -0.418, 0.380, 1.908, 1.821, 3.915 ], "groove_widths": [ 17.049, null, 19.628, null ], "simple_Rise": 3.124, "simple_Twist": 21.114, "simple_hRise": 2.785, "simple_hTwist": 21.215 }, { "index": 7, "nt1": "///2/1224", "nt2": "///2/1642", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.401, -0.418, 0.380, 1.908, 1.821, 3.915 ], "step_params": [ -0.474, -1.949, 3.364, -0.176, 0.104, 37.860 ], "heli_params": [ -3.018, 0.708, 3.361, 0.160, 0.271, 37.860 ], "bp2_params": [ -0.051, -0.108, 0.128, 0.620, 2.000, 2.656 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.364, "simple_Twist": 30.241, "simple_hRise": 3.361, "simple_hTwist": 30.241 }, { "index": 8, "nt1": "///2/1225", "nt2": "///2/1641", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.051, -0.108, 0.128, 0.620, 2.000, 2.656 ], "step_params": [ -1.074, -0.912, 3.314, 0.564, 1.537, 58.970 ], "heli_params": [ -1.005, 1.120, 3.282, 1.562, -0.573, 58.990 ], "bp2_params": [ 6.798, -4.111, -0.172, 3.111, 2.309, -5.415 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.314, "simple_Twist": 14.194, "simple_hRise": 3.153, "simple_hTwist": 14.288 }, { "index": 9, "nt1": "///2/1226", "nt2": "///2/1640", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 38, "num_stems": 3, "strand1": "AUGCCGCCAGCUAC", "strand2": "UUCGGCGUCCGAGG", "bp_type": "..|||||..|||.|", "helix_form": ".x.xAAxxxAA.x", "helical_rise": 2.987, "helical_rise_std": 1.736, "helical_radius": 8.422, "helical_radius_std": 1.943, "helical_axis": [ -0.986, 0.162, -0.025 ], "point1": [ 208.419, 241.028, 240.839 ], "point2": [ 170.152, 247.332, 239.857 ], "num_pairs": 14, "pairs": [ { "index": 1, "nt1": "///2/1241", "nt2": "///2/1239", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.221, -8.487, -1.208, -10.054, -28.487, -64.240 ], "step_params": [ -0.345, -3.824, 3.954, 16.392, -2.095, 169.429 ], "heli_params": [ -1.917, 0.199, 3.956, -1.052, -8.231, 169.539 ], "bp2_params": [ 1.786, 3.814, 1.028, -6.263, 0.865, 178.300 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.954, "simple_Twist": 9.906, "simple_hRise": 2.164, "simple_hTwist": 19.249 }, { "index": 2, "nt1": "///2/1242", "nt2": "///2/1238", "bp": "U+U", "name": "--", "Saenger": "13-XIII", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 1.786, 3.814, 1.028, -6.263, 0.865, 178.300 ], "step_params": [ -0.358, -1.228, 3.703, -9.083, 2.043, -52.295 ], "heli_params": [ 1.227, -1.060, 3.641, -2.297, -10.213, -53.059 ], "bp2_params": [ -0.179, -0.157, 0.311, -7.022, -0.271, -0.952 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.703, "simple_Twist": 45.363, "simple_hRise": 3.651, "simple_hTwist": 46.259 }, { "index": 3, "nt1": "///2/1520", "nt2": "///2/1237", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.157, 0.311, -7.022, -0.271, -0.952 ], "step_params": [ -0.823, -1.029, 3.126, 8.262, 0.273, 50.542 ], "heli_params": [ -1.209, 1.488, 2.961, 0.318, -9.603, 51.169 ], "bp2_params": [ 0.189, -0.166, -0.552, 6.293, -4.896, 1.025 ], "groove_widths": [ 17.486, null, 12.321, null ], "simple_Rise": 3.126, "simple_Twist": 48.975, "simple_hRise": 2.954, "simple_hTwist": 49.625 }, { "index": 4, "nt1": "///2/1521", "nt2": "///2/1236", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.166, -0.552, 6.293, -4.896, 1.025 ], "step_params": [ -1.951, -1.345, 3.262, 1.569, 17.388, 45.358 ], "heli_params": [ -2.881, 2.491, 2.548, 21.627, -1.951, 48.436 ], "bp2_params": [ 0.133, -0.149, -0.467, 6.813, 10.444, -0.413 ], "groove_widths": [ 17.629, 14.677, 10.692, 8.050 ], "simple_Rise": 3.262, "simple_Twist": 45.330, "simple_hRise": 2.548, "simple_hTwist": 48.410 }, { "index": 5, "nt1": "///2/1523", "nt2": "///2/1235", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.133, -0.149, -0.467, 6.813, 10.444, -0.413 ], "step_params": [ -0.607, -1.621, 3.784, 6.362, 6.397, 32.454 ], "heli_params": [ -3.943, 2.185, 3.242, 11.179, -11.118, 33.653 ], "bp2_params": [ -0.147, -0.311, -1.068, 0.061, 0.692, -0.780 ], "groove_widths": [ 19.693, 17.486, 13.700, 11.273 ], "simple_Rise": 3.784, "simple_Twist": 34.256, "simple_hRise": 3.277, "simple_hTwist": 35.390 }, { "index": 6, "nt1": "///2/1524", "nt2": "///2/1234", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.147, -0.311, -1.068, 0.061, 0.692, -0.780 ], "step_params": [ 0.358, -1.568, 3.483, 3.973, 3.310, 28.271 ], "heli_params": [ -3.938, 0.213, 3.300, 6.705, -8.049, 28.731 ], "bp2_params": [ 0.170, -0.229, -0.776, 8.406, -1.607, -1.740 ], "groove_widths": [ 17.547, 14.308, 17.504, 15.527 ], "simple_Rise": 3.483, "simple_Twist": 26.802, "simple_hRise": 3.287, "simple_hTwist": 27.287 }, { "index": 7, "nt1": "///2/1525", "nt2": "///2/1233", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.229, -0.776, 8.406, -1.607, -1.740 ], "step_params": [ 0.249, -1.123, 5.993, 21.808, 20.731, 29.789 ], "heli_params": [ -5.416, 3.706, 3.875, 31.886, -33.543, 42.097 ], "bp2_params": [ -2.720, -1.288, 1.089, 18.207, -1.212, 12.565 ], "groove_widths": [ 16.230, 11.300, 15.864, 14.036 ], "simple_Rise": 5.993, "simple_Twist": 47.937, "simple_hRise": 4.876, "simple_hTwist": 56.121 }, { "index": 8, "nt1": "///2/1527", "nt2": "///2/1232", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.720, -1.288, 1.089, 18.207, -1.212, 12.565 ], "step_params": [ -1.982, -3.257, 3.062, -25.908, 7.712, 22.896 ], "heli_params": [ -6.619, -0.919, 2.739, 14.394, 48.357, 35.286 ], "bp2_params": [ -6.693, -4.378, -0.980, -19.688, 2.268, -20.016 ], "groove_widths": [ 18.772, 15.300, 15.884, 14.773 ], "simple_Rise": 3.062, "simple_Twist": 49.738, "simple_hRise": 3.171, "simple_hTwist": 56.195 }, { "index": 9, "nt1": "///2/1253", "nt2": "///2/1231", "bp": "A-C", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.693, -4.378, -0.980, -19.688, 2.268, -20.016 ], "step_params": [ 5.469, -0.905, 3.710, 7.083, 17.064, 39.672 ], "heli_params": [ -3.229, -6.528, 3.902, 23.653, -9.817, 43.606 ], "bp2_params": [ -0.187, -0.122, -0.090, -2.470, -2.944, 0.397 ], "groove_widths": [ 17.851, 15.890, 16.264, 5.906 ], "simple_Rise": 3.710, "simple_Twist": -3.567, "simple_hRise": -0.531, "simple_hTwist": -18.814 }, { "index": 10, "nt1": "///2/1528", "nt2": "///2/1230", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.187, -0.122, -0.090, -2.470, -2.944, 0.397 ], "step_params": [ -0.489, -1.409, 3.118, 0.229, 1.741, 38.842 ], "heli_params": [ -2.316, 0.761, 3.052, 2.616, -0.344, 38.880 ], "bp2_params": [ 0.190, -0.157, -0.193, 0.607, -2.000, 0.098 ], "groove_widths": [ 17.336, 15.420, 19.974, 15.387 ], "simple_Rise": 3.118, "simple_Twist": 36.806, "simple_hRise": 3.048, "simple_hTwist": 36.847 }, { "index": 11, "nt1": "///2/1529", "nt2": "///2/1229", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.190, -0.157, -0.193, 0.607, -2.000, 0.098 ], "step_params": [ 0.617, -1.690, 3.534, 1.563, 2.344, 32.207 ], "heli_params": [ -3.478, -0.813, 3.431, 4.216, -2.811, 32.327 ], "bp2_params": [ -0.059, -0.120, 0.624, -0.953, -2.152, -2.077 ], "groove_widths": [ 17.841, null, 13.770, null ], "simple_Rise": 3.534, "simple_Twist": 33.755, "simple_hRise": 3.436, "simple_hTwist": 33.869 }, { "index": 12, "nt1": "///2/1530", "nt2": "///2/1228", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.059, -0.120, 0.624, -0.953, -2.152, -2.077 ], "step_params": [ 0.057, -2.625, 3.307, 18.397, 21.666, 33.154 ], "heli_params": [ -5.255, 1.371, 1.302, 31.706, -26.922, 43.408 ], "bp2_params": [ 0.282, 2.442, -0.719, -20.294, -7.488, -29.679 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.307, "simple_Twist": 31.337, "simple_hRise": 1.195, "simple_hTwist": 42.066 }, { "index": 13, "nt1": "///2/1531", "nt2": "///2/1227", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.282, 2.442, -0.719, -20.294, -7.488, -29.679 ], "step_params": [ -0.021, 0.037, 3.052, -9.499, 0.675, 17.334 ], "heli_params": [ -0.195, -4.190, 2.691, 2.052, 28.860, 19.760 ], "bp2_params": [ 0.141, -0.158, 0.414, -0.720, -4.157, 0.406 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.052, "simple_Twist": 17.510, "simple_hRise": 2.697, "simple_hTwist": 19.915 }, { "index": 14, "nt1": "///2/1532", "nt2": "///2/1638", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 39, "num_stems": 1, "strand1": "CAUUCCCCAUGAC", "strand2": "CGUAGGGGCUAGG", "bp_type": "...|||||....|", "helix_form": ".xxAAAA...x.", "helical_rise": 3.575, "helical_rise_std": 1.093, "helical_radius": 9.339, "helical_radius_std": 2.897, "helical_axis": [ -0.421, 0.629, -0.653 ], "point1": [ 195.501, 239.164, 276.219 ], "point2": [ 177.388, 266.195, 248.149 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///2/1261", "nt2": "///2/1618", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..-W", "bp1_params": [ 5.391, -2.935, 0.730, -21.199, 50.727, 21.398 ], "step_params": [ 1.978, -3.231, 7.276, -43.632, -25.365, 91.728 ], "heli_params": [ -1.182, -2.818, 6.690, -16.732, 28.783, 101.913 ], "bp2_params": [ -3.156, 3.520, 0.365, -42.622, -9.692, 86.929 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 7.276, "simple_Twist": -34.237, "simple_hRise": 4.331, "simple_hTwist": -60.350 }, { "index": 2, "nt1": "///2/1260", "nt2": "///2/1617", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ -3.156, 3.520, 0.365, -42.622, -9.692, 86.929 ], "step_params": [ -0.742, -0.602, 5.129, 10.507, -7.312, 36.828 ], "heli_params": [ 0.481, 3.103, 4.780, -11.168, -16.047, 38.917 ], "bp2_params": [ 0.241, -1.812, -0.663, -31.731, 0.504, 87.631 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.129, "simple_Twist": 1.196, "simple_hRise": 0.214, "simple_hTwist": 12.856 }, { "index": 3, "nt1": "///2/1624", "nt2": "///2/1616", "bp": "U+U", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.241, -1.812, -0.663, -31.731, 0.504, 87.631 ], "step_params": [ -1.845, -1.122, 5.064, 5.863, 6.128, -81.523 ], "heli_params": [ 0.614, -1.175, 5.224, -4.681, 4.479, -81.887 ], "bp2_params": [ -0.209, -0.242, -1.070, 4.989, 12.370, -5.194 ], "groove_widths": [ 21.951, null, 26.384, null ], "simple_Rise": 5.064, "simple_Twist": 44.335, "simple_hRise": 4.610, "simple_hTwist": 45.099 }, { "index": 4, "nt1": "///2/1625", "nt2": "///2/1614", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.209, -0.242, -1.070, 4.989, 12.370, -5.194 ], "step_params": [ 0.624, -1.891, 3.483, 0.984, 2.396, 30.245 ], "heli_params": [ -4.114, -0.985, 3.345, 4.581, -1.882, 30.354 ], "bp2_params": [ 0.165, -0.152, -0.606, 7.469, 2.335, -0.124 ], "groove_widths": [ 21.062, 15.323, 15.487, 13.783 ], "simple_Rise": 3.483, "simple_Twist": 28.216, "simple_hRise": 3.334, "simple_hTwist": 28.332 }, { "index": 5, "nt1": "///2/1626", "nt2": "///2/1613", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.152, -0.606, 7.469, 2.335, -0.124 ], "step_params": [ 0.429, -1.710, 3.161, 3.576, 11.310, 33.292 ], "heli_params": [ -4.315, -0.236, 2.497, 19.006, -6.010, 35.285 ], "bp2_params": [ 0.200, -0.192, -0.732, 3.111, -4.442, 2.199 ], "groove_widths": [ 19.458, 15.158, 16.638, 15.246 ], "simple_Rise": 3.161, "simple_Twist": 33.087, "simple_hRise": 2.492, "simple_hTwist": 35.093 }, { "index": 6, "nt1": "///2/1627", "nt2": "///2/1612", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.200, -0.192, -0.732, 3.111, -4.442, 2.199 ], "step_params": [ -0.383, -1.729, 3.124, 2.138, 18.252, 31.463 ], "heli_params": [ -4.864, 0.860, 1.849, 30.611, -3.585, 36.319 ], "bp2_params": [ 0.115, -0.187, -0.702, 6.256, 13.209, -1.156 ], "groove_widths": [ 18.199, 16.022, 16.323, 14.395 ], "simple_Rise": 3.124, "simple_Twist": 31.635, "simple_hRise": 1.856, "simple_hTwist": 36.467 }, { "index": 7, "nt1": "///2/1628", "nt2": "///2/1611", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.115, -0.187, -0.702, 6.256, 13.209, -1.156 ], "step_params": [ -0.087, -1.228, 3.477, 3.651, 5.383, 24.969 ], "heli_params": [ -4.290, 1.239, 3.104, 12.189, -8.266, 25.789 ], "bp2_params": [ 0.115, -0.222, -0.925, 13.208, 4.778, -1.680 ], "groove_widths": [ 19.046, 17.077, 17.127, 14.688 ], "simple_Rise": 3.477, "simple_Twist": 25.202, "simple_hRise": 3.108, "simple_hTwist": 26.015 }, { "index": 8, "nt1": "///2/1629", "nt2": "///2/1610", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.115, -0.222, -0.925, 13.208, 4.778, -1.680 ], "step_params": [ 1.053, -1.116, 4.255, 3.084, 18.621, 29.686 ], "heli_params": [ -5.291, -1.178, 3.130, 32.535, -5.388, 35.064 ], "bp2_params": [ 0.769, -0.343, -1.624, 11.453, 12.082, 10.034 ], "groove_widths": [ 19.120, 16.760, 17.606, 15.566 ], "simple_Rise": 4.255, "simple_Twist": 25.751, "simple_hRise": 2.916, "simple_hTwist": 31.833 }, { "index": 9, "nt1": "///2/1630", "nt2": "///2/1609", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.769, -0.343, -1.624, 11.453, 12.082, 10.034 ], "step_params": [ -0.800, -1.089, 3.506, 0.876, 1.630, 31.569 ], "heli_params": [ -2.318, 1.640, 3.424, 2.993, -1.608, 31.622 ], "bp2_params": [ 1.474, -2.095, -1.740, 20.845, 1.533, -5.592 ], "groove_widths": [ 20.289, 15.385, 14.897, 13.937 ], "simple_Rise": 3.506, "simple_Twist": 26.569, "simple_hRise": 3.407, "simple_hTwist": 26.632 }, { "index": 10, "nt1": "///2/1631", "nt2": "///2/1608", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.474, -2.095, -1.740, 20.845, 1.533, -5.592 ], "step_params": [ 1.515, 0.141, 3.167, 14.939, 23.094, 48.299 ], "heli_params": [ -1.292, -0.702, 3.239, 25.935, -16.777, 55.171 ], "bp2_params": [ 6.546, -3.669, -0.574, 57.957, 12.662, 3.509 ], "groove_widths": [ 21.425, null, 15.399, null ], "simple_Rise": 3.167, "simple_Twist": 7.452, "simple_hRise": 1.745, "simple_hTwist": 28.477 }, { "index": 11, "nt1": "///2/1632", "nt2": "///2/1607", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.546, -3.669, -0.574, 57.957, 12.662, 3.509 ], "step_params": [ -3.251, -0.937, 8.100, -11.332, 12.652, 16.463 ], "heli_params": [ -13.627, -2.209, 6.719, 34.417, 30.825, 23.612 ], "bp2_params": [ -6.567, -3.336, -1.162, 5.292, 1.484, -2.578 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 8.100, "simple_Twist": 108.005, "simple_hRise": 8.211, "simple_hTwist": 108.915 }, { "index": 12, "nt1": "///2/1634", "nt2": "///2/1605", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.567, -3.336, -1.162, 5.292, 1.484, -2.578 ], "step_params": [ 0.979, -0.746, 3.534, 0.532, 0.723, 59.934 ], "heli_params": [ -0.786, -0.951, 3.534, 0.724, -0.533, 59.940 ], "bp2_params": [ 0.193, -0.181, -0.893, 8.275, -5.654, 3.211 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.534, "simple_Twist": 17.826, "simple_hRise": 3.529, "simple_hTwist": 17.849 }, { "index": 13, "nt1": "///2/1635", "nt2": "///2/1604", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 40, "num_stems": 1, "strand1": "CCCG", "strand2": "GGGC", "bp_type": "|||.", "helix_form": "...", "helical_rise": 2.531, "helical_rise_std": 0.442, "helical_radius": 9.047, "helical_radius_std": 1.016, "helical_axis": [ 0.911, -0.410, -0.055 ], "point1": [ 205.111, 231.626, 256.810 ], "point2": [ 212.074, 228.492, 256.386 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1266", "nt2": "///2/1516", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.164, -0.150, -0.166, 3.143, 9.633, -0.105 ], "step_params": [ -1.857, -1.878, 3.005, 1.485, 5.358, 36.026 ], "heli_params": [ -3.648, 3.148, 2.631, 8.601, -2.384, 36.438 ], "bp2_params": [ 0.383, -0.095, -0.503, 15.240, 9.781, -23.269 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.005, "simple_Twist": 34.808, "simple_hRise": 2.617, "simple_hTwist": 35.236 }, { "index": 2, "nt1": "///2/1267", "nt2": "///2/1515", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.383, -0.095, -0.503, 15.240, 9.781, -23.269 ], "step_params": [ 0.410, -2.209, 3.167, 0.276, 7.952, 18.396 ], "heli_params": [ -9.426, -1.073, 2.047, 23.499, -0.815, 20.030 ], "bp2_params": [ -0.982, 0.585, -0.970, 23.271, -5.447, -0.603 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.167, "simple_Twist": 25.820, "simple_hRise": 2.395, "simple_hTwist": 26.998 }, { "index": 3, "nt1": "///2/1268", "nt2": "///2/1514", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.982, 0.585, -0.970, 23.271, -5.447, -0.603 ], "step_params": [ 1.818, -1.041, 3.196, -1.050, 21.248, 28.932 ], "heli_params": [ -4.375, -3.091, 1.942, 36.893, 1.823, 35.776 ], "bp2_params": [ -0.360, 1.896, -0.561, 24.798, 2.625, 23.925 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.196, "simple_Twist": 25.458, "simple_hRise": 1.761, "simple_hTwist": 33.063 }, { "index": 4, "nt1": "///2/1269", "nt2": "///2/1513", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 41, "num_stems": 0, "strand1": "GCCC", "strand2": "GCUG", "bp_type": "...|", "helix_form": "x..", "helical_rise": 1.710, "helical_rise_std": 0.629, "helical_radius": 8.962, "helical_radius_std": 3.560, "helical_axis": [ 0.862, -0.506, 0.028 ], "point1": [ 214.372, 227.598, 260.563 ], "point2": [ 218.589, 225.121, 260.700 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1270", "nt2": "///2/1298", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "bp1_params": [ 5.075, 0.292, 1.693, -1.192, 18.201, 62.038 ], "step_params": [ 1.575, -1.897, 4.475, -16.904, 19.814, 25.693 ], "heli_params": [ -5.995, -5.047, 1.450, 35.093, 29.939, 36.429 ], "bp2_params": [ -1.635, -1.404, -0.471, 38.373, -18.817, 20.147 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.475, "simple_Twist": 74.561, "simple_hRise": 3.591, "simple_hTwist": 78.351 }, { "index": 2, "nt1": "///2/1271", "nt2": "///2/1512", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.635, -1.404, -0.471, 38.373, -18.817, 20.147 ], "step_params": [ -1.374, -1.289, 4.835, -25.770, 23.996, 28.314 ], "heli_params": [ -5.042, -1.803, 3.194, 35.694, 38.333, 44.901 ], "bp2_params": [ -4.995, -1.114, 1.106, -4.573, 2.768, 13.126 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.835, "simple_Twist": 43.512, "simple_hRise": 3.930, "simple_hTwist": 55.431 }, { "index": 3, "nt1": "///2/1272", "nt2": "///2/1511", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -4.995, -1.114, 1.106, -4.573, 2.768, 13.126 ], "step_params": [ 0.572, -1.425, 3.591, -1.160, 1.128, 37.962 ], "heli_params": [ -2.346, -1.039, 3.530, 1.733, 1.783, 37.995 ], "bp2_params": [ 0.168, -0.363, 1.180, 0.074, 3.451, 2.245 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.591, "simple_Twist": 8.058, "simple_hRise": 3.245, "simple_hTwist": 8.219 }, { "index": 4, "nt1": "///2/1273", "nt2": "///2/1510", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 42, "num_stems": 2, "strand1": "GAUUGAGAGAU", "strand2": "AUCUCUUUCUC", "bp_type": ".|..||..||.", "helix_form": ".x...xx..x", "helical_rise": 3.049, "helical_rise_std": 1.291, "helical_radius": 8.467, "helical_radius_std": 3.135, "helical_axis": [ -0.338, 0.886, -0.316 ], "point1": [ 231.767, 205.297, 282.998 ], "point2": [ 221.531, 232.126, 273.421 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///2/1286", "nt2": "///2/1313", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.578, -3.082, 0.954, 4.911, 2.319, -12.090 ], "step_params": [ -4.055, -2.394, 2.347, -9.058, 5.559, -7.878 ], "heli_params": [ 8.138, -21.291, -0.368, -28.011, -45.643, -13.222 ], "bp2_params": [ 0.120, -0.054, 0.072, 19.261, -6.954, 1.067 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.347, "simple_Twist": 31.309, "simple_hRise": 2.920, "simple_hTwist": 33.020 }, { "index": 2, "nt1": "///2/1287", "nt2": "///2/1314", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.120, -0.054, 0.072, 19.261, -6.954, 1.067 ], "step_params": [ 4.865, -1.081, 5.951, 13.305, -17.019, 48.811 ], "heli_params": [ 1.050, -3.676, 6.969, -19.526, -15.265, 53.109 ], "bp2_params": [ 0.387, -2.378, -1.870, -19.298, 13.171, -5.842 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.951, "simple_Twist": 46.655, "simple_hRise": 6.991, "simple_hTwist": 51.159 }, { "index": 3, "nt1": "///2/1288", "nt2": "///2/1311", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.387, -2.378, -1.870, -19.298, 13.171, -5.842 ], "step_params": [ 2.921, -0.495, 3.930, 0.631, 43.068, 51.361 ], "heli_params": [ -2.556, -2.648, 2.849, 42.319, -0.620, 66.077 ], "bp2_params": [ 0.837, -1.403, -0.537, -41.462, -19.713, 9.925 ], "groove_widths": [ 20.409, null, 11.814, null ], "simple_Rise": 3.930, "simple_Twist": 45.255, "simple_hRise": 2.650, "simple_hTwist": 61.684 }, { "index": 4, "nt1": "///2/1289", "nt2": "///2/1310", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.837, -1.403, -0.537, -41.462, -19.713, 9.925 ], "step_params": [ -2.364, -1.287, 3.337, -0.103, 4.502, 37.628 ], "heli_params": [ -2.559, 3.627, 3.174, 6.949, 0.159, 37.887 ], "bp2_params": [ 0.540, 0.071, -0.675, -41.561, 12.965, -28.081 ], "groove_widths": [ 22.165, 12.208, 17.627, 17.487 ], "simple_Rise": 3.337, "simple_Twist": 44.330, "simple_hRise": 3.203, "simple_hTwist": 44.547 }, { "index": 5, "nt1": "///2/1290", "nt2": "///2/1309", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.540, 0.071, -0.675, -41.561, 12.965, -28.081 ], "step_params": [ 2.373, -1.591, 3.223, 13.595, -9.637, 21.031 ], "heli_params": [ -0.204, -0.565, 4.298, -22.408, -31.611, 26.774 ], "bp2_params": [ 0.115, -0.103, -0.650, -5.258, 0.155, -3.549 ], "groove_widths": [ 20.507, 19.567, 20.505, 20.492 ], "simple_Rise": 3.223, "simple_Twist": 21.615, "simple_hRise": 4.294, "simple_hTwist": 27.233 }, { "index": 6, "nt1": "///2/1291", "nt2": "///2/1308", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.115, -0.103, -0.650, -5.258, 0.155, -3.549 ], "step_params": [ 2.409, -0.967, 3.922, 3.516, 12.751, 98.644 ], "heli_params": [ -0.878, -1.513, 3.874, 8.379, -2.311, 99.297 ], "bp2_params": [ 0.771, -1.325, 1.333, -17.511, 9.539, 156.418 ], "groove_widths": [ 21.962, 20.388, 17.631, 16.187 ], "simple_Rise": 3.922, "simple_Twist": -22.814, "simple_hRise": 3.550, "simple_hTwist": -26.327 }, { "index": 7, "nt1": "///2/1302", "nt2": "///2/1307", "bp": "G+U", "name": "rWobble", "Saenger": "27-XXVII", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 0.771, -1.325, 1.333, -17.511, 9.539, 156.418 ], "step_params": [ 2.723, 3.860, 3.215, 42.528, 25.022, 76.259 ], "heli_params": [ 2.030, -0.706, 4.860, 18.584, -31.586, 88.744 ], "bp2_params": [ 1.031, 1.149, -1.977, -24.377, -11.117, 127.073 ], "groove_widths": [ 22.838, 18.797, 14.167, 12.398 ], "simple_Rise": 3.215, "simple_Twist": 87.736, "simple_hRise": 4.664, "simple_hTwist": 98.142 }, { "index": 8, "nt1": "///2/1293", "nt2": "///2/1306", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 1.031, 1.149, -1.977, -24.377, -11.117, 127.073 ], "step_params": [ -2.721, -1.249, 4.263, 26.536, -1.207, -82.953 ], "heli_params": [ 0.951, -1.143, 4.795, 0.891, 19.596, -86.364 ], "bp2_params": [ -0.064, -0.175, -0.767, -16.721, 17.329, -3.443 ], "groove_widths": [ 22.946, null, 9.063, null ], "simple_Rise": 4.263, "simple_Twist": 28.565, "simple_hRise": 1.381, "simple_hTwist": 38.818 }, { "index": 9, "nt1": "///2/1294", "nt2": "///2/1305", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.064, -0.175, -0.767, -16.721, 17.329, -3.443 ], "step_params": [ -1.109, -1.369, 3.705, -2.482, 30.072, 41.049 ], "heli_params": [ -3.805, 1.117, 2.315, 37.429, 3.089, 50.558 ], "bp2_params": [ 0.475, -0.283, -1.320, -18.151, 18.369, -12.570 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.705, "simple_Twist": 38.348, "simple_hRise": 2.203, "simple_hTwist": 48.442 }, { "index": 10, "nt1": "///2/1295", "nt2": "///2/1304", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.475, -0.283, -1.320, -18.151, 18.369, -12.570 ], "step_params": [ 0.305, -1.647, 4.706, 7.100, 12.716, 91.627 ], "heli_params": [ -1.482, -0.020, 4.513, 8.822, -4.926, 92.522 ], "bp2_params": [ 2.351, 0.321, -0.900, 44.583, 18.712, -72.680 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.706, "simple_Twist": 23.010, "simple_hRise": 3.313, "simple_hTwist": 27.179 }, { "index": 11, "nt1": "///2/1297", "nt2": "///2/1303", "bp": "U+C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M" } ] }, { "index": 43, "num_stems": 3, "strand1": "CCGUGGUGGGGUA", "strand2": "GGCACAUUCCCGC", "bp_type": "|||||..|||||.", "helix_form": "AAAA.x..x..x", "helical_rise": 3.483, "helical_rise_std": 0.933, "helical_radius": 9.222, "helical_radius_std": 2.695, "helical_axis": [ -0.770, 0.103, -0.630 ], "point1": [ 232.436, 204.999, 262.493 ], "point2": [ 200.068, 209.332, 235.990 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///2/1316", "nt2": "///2/1281", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.168, -0.185, -0.729, 8.895, -1.604, 0.076 ], "step_params": [ -0.085, -1.930, 3.477, 0.094, 2.747, 31.723 ], "heli_params": [ -4.039, 0.173, 3.302, 5.014, -0.171, 31.839 ], "bp2_params": [ 0.224, -0.139, -0.157, 6.430, -10.585, 0.582 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.477, "simple_Twist": 31.568, "simple_hRise": 3.301, "simple_hTwist": 31.685 }, { "index": 2, "nt1": "///2/1317", "nt2": "///2/1280", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.224, -0.139, -0.157, 6.430, -10.585, 0.582 ], "step_params": [ -0.055, -1.382, 2.913, -2.498, 23.873, 36.895 ], "heli_params": [ -3.632, -0.112, 1.748, 33.710, 3.528, 43.787 ], "bp2_params": [ -0.197, -0.138, 0.060, 2.416, 12.623, 0.344 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.913, "simple_Twist": 38.830, "simple_hRise": 1.813, "simple_hTwist": 45.406 }, { "index": 3, "nt1": "///2/1318", "nt2": "///2/1279", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.197, -0.138, 0.060, 2.416, 12.623, 0.344 ], "step_params": [ -0.549, -1.920, 3.173, 4.967, 5.680, 36.222 ], "heli_params": [ -3.728, 1.478, 2.754, 9.016, -7.884, 36.974 ], "bp2_params": [ -0.122, -0.165, -0.636, 8.434, 7.504, -3.049 ], "groove_widths": [ 17.908, null, 12.694, null ], "simple_Rise": 3.173, "simple_Twist": 35.945, "simple_hRise": 2.751, "simple_hTwist": 36.703 }, { "index": 4, "nt1": "///2/1319", "nt2": "///2/1278", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.122, -0.165, -0.636, 8.434, 7.504, -3.049 ], "step_params": [ 1.383, -1.412, 3.814, 7.379, 5.760, 32.013 ], "heli_params": [ -3.592, -0.966, 3.729, 10.176, -13.036, 33.319 ], "bp2_params": [ -0.175, -0.176, -0.503, -0.175, -3.150, 0.826 ], "groove_widths": [ 18.733, 14.967, 12.727, 10.730 ], "simple_Rise": 3.814, "simple_Twist": 32.394, "simple_hRise": 3.732, "simple_hTwist": 33.685 }, { "index": 5, "nt1": "///2/1320", "nt2": "///2/1277", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.175, -0.176, -0.503, -0.175, -3.150, 0.826 ], "step_params": [ 0.163, -0.431, 3.570, 2.196, -0.796, 66.179 ], "heli_params": [ -0.360, -0.053, 3.578, -0.728, -2.010, 66.216 ], "bp2_params": [ 6.608, -4.006, -0.472, 0.112, -4.547, -0.960 ], "groove_widths": [ 19.645, 13.205, 12.977, 12.119 ], "simple_Rise": 3.570, "simple_Twist": 20.929, "simple_hRise": 3.582, "simple_hTwist": 21.058 }, { "index": 6, "nt1": "///2/1321", "nt2": "///2/1276", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.608, -4.006, -0.472, 0.112, -4.547, -0.960 ], "step_params": [ 1.906, -5.364, 6.120, 1.903, -3.451, 57.407 ], "heli_params": [ -5.215, -1.783, 6.460, -3.588, -1.979, 57.531 ], "bp2_params": [ -1.648, -2.086, 1.430, -5.319, 7.035, -2.433 ], "groove_widths": [ 19.855, 12.747, 14.762, 14.555 ], "simple_Rise": 6.120, "simple_Twist": 112.334, "simple_hRise": 6.248, "simple_hTwist": 112.379 }, { "index": 7, "nt1": "///2/1323", "nt2": "///2/1505", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.648, -2.086, 1.430, -5.319, 7.035, -2.433 ], "step_params": [ 0.260, -1.615, 3.224, -0.617, 2.199, 30.344 ], "heli_params": [ -3.502, -0.615, 3.096, 4.194, 1.177, 30.428 ], "bp2_params": [ -2.629, -0.811, 1.161, 0.932, 7.195, 1.590 ], "groove_widths": [ 22.215, 14.080, 14.171, 14.164 ], "simple_Rise": 3.224, "simple_Twist": 34.441, "simple_hRise": 3.113, "simple_hTwist": 34.514 }, { "index": 8, "nt1": "///2/1324", "nt2": "///2/1504", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.629, -0.811, 1.161, 0.932, 7.195, 1.590 ], "step_params": [ 0.519, -1.614, 3.341, 1.673, 4.491, 38.710 ], "heli_params": [ -2.959, -0.576, 3.160, 6.743, -2.512, 38.994 ], "bp2_params": [ -0.139, -0.319, 1.231, 6.328, 3.508, 1.747 ], "groove_widths": [ 21.007, 15.520, 14.845, 12.994 ], "simple_Rise": 3.341, "simple_Twist": 24.793, "simple_hRise": 3.033, "simple_hTwist": 25.244 }, { "index": 9, "nt1": "///2/1325", "nt2": "///2/1503", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.139, -0.319, 1.231, 6.328, 3.508, 1.747 ], "step_params": [ -0.490, -1.570, 3.209, 3.688, 0.506, 38.072 ], "heli_params": [ -2.458, 1.198, 3.129, 0.774, -5.636, 38.247 ], "bp2_params": [ -0.366, 0.080, 0.909, 7.064, -8.892, 8.459 ], "groove_widths": [ 17.377, 15.919, 14.797, 12.394 ], "simple_Rise": 3.209, "simple_Twist": 39.318, "simple_hRise": 3.132, "simple_hTwist": 39.487 }, { "index": 10, "nt1": "///2/1327", "nt2": "///2/1502", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.366, 0.080, 0.909, 7.064, -8.892, 8.459 ], "step_params": [ -0.553, -2.113, 3.128, 1.746, 9.133, 36.056 ], "heli_params": [ -4.376, 1.070, 2.509, 14.460, -2.764, 37.197 ], "bp2_params": [ -0.185, -0.143, 0.400, -0.254, 1.289, 1.603 ], "groove_widths": [ 16.997, null, 13.283, null ], "simple_Rise": 3.128, "simple_Twist": 35.058, "simple_hRise": 2.489, "simple_hTwist": 36.233 }, { "index": 11, "nt1": "///2/1328", "nt2": "///2/1501", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.185, -0.143, 0.400, -0.254, 1.289, 1.603 ], "step_params": [ -1.483, -1.350, 3.615, 2.059, 1.309, 39.289 ], "heli_params": [ -2.173, 2.467, 3.491, 1.945, -3.058, 39.362 ], "bp2_params": [ 1.767, -0.252, 1.022, 0.396, 0.426, -24.995 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.615, "simple_Twist": 29.445, "simple_hRise": 3.444, "simple_hTwist": 29.544 }, { "index": 12, "nt1": "///2/1329", "nt2": "///2/1500", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.767, -0.252, 1.022, 0.396, 0.426, -24.995 ], "step_params": [ -1.346, -1.728, 2.970, 21.862, -6.035, 83.620 ], "heli_params": [ -1.146, 1.423, 2.721, -4.455, -16.138, 86.091 ], "bp2_params": [ -2.804, 0.161, 0.278, 5.158, 10.610, -101.415 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.970, "simple_Twist": 107.259, "simple_hRise": 2.819, "simple_hTwist": 108.898 }, { "index": 13, "nt1": "///2/1332", "nt2": "///2/1493", "bp": "A-C", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tHW", "DSSR": "tM-W" } ] }, { "index": 44, "num_stems": 1, "strand1": "GGCCGUC", "strand2": "UUGGCAU", "bp_type": ".|||||.", "helix_form": "x.Axxx", "helical_rise": 3.750, "helical_rise_std": 1.202, "helical_radius": 9.450, "helical_radius_std": 3.822, "helical_axis": [ -0.939, 0.232, -0.253 ], "point1": [ 194.883, 206.408, 235.922 ], "point2": [ 173.477, 211.697, 230.162 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///2/1334", "nt2": "///2/1496", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.823, 0.822, -0.887, -39.123, 1.565, -34.357 ], "step_params": [ 5.393, -0.270, 2.850, -14.509, 7.720, 41.391 ], "heli_params": [ -0.788, -7.945, 0.936, 10.441, 19.622, 44.401 ], "bp2_params": [ -2.563, -0.573, -0.205, -2.857, 2.474, -8.946 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.850, "simple_Twist": 68.245, "simple_hRise": 1.780, "simple_hTwist": 69.962 }, { "index": 2, "nt1": "///2/1335", "nt2": "///2/1492", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.563, -0.573, -0.205, -2.857, 2.474, -8.946 ], "step_params": [ 0.652, -1.119, 3.448, -1.591, 2.358, 39.758 ], "heli_params": [ -1.925, -1.148, 3.352, 3.462, 2.336, 39.856 ], "bp2_params": [ 0.180, -0.123, -0.200, 3.531, 2.958, 0.293 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.448, "simple_Twist": 25.137, "simple_hRise": 3.284, "simple_hTwist": 25.295 }, { "index": 3, "nt1": "///2/1336", "nt2": "///2/1491", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.180, -0.123, -0.200, 3.531, 2.958, 0.293 ], "step_params": [ 0.576, -1.854, 3.117, -1.396, 16.013, 34.853 ], "heli_params": [ -4.505, -1.025, 2.075, 25.147, 2.193, 38.277 ], "bp2_params": [ 0.207, -0.131, 0.183, 1.010, -5.996, 0.687 ], "groove_widths": [ 20.598, null, 14.461, null ], "simple_Rise": 3.117, "simple_Twist": 34.867, "simple_hRise": 2.076, "simple_hTwist": 38.289 }, { "index": 4, "nt1": "///2/1337", "nt2": "///2/1490", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.207, -0.131, 0.183, 1.010, -5.996, 0.687 ], "step_params": [ -0.409, -1.634, 3.771, 1.002, 3.087, 32.043 ], "heli_params": [ -3.567, 0.939, 3.588, 5.574, -1.809, 32.203 ], "bp2_params": [ -1.298, -0.098, -1.020, -10.214, 10.268, -10.641 ], "groove_widths": [ 20.507, null, 16.049, null ], "simple_Rise": 3.771, "simple_Twist": 40.083, "simple_hRise": 3.630, "simple_hTwist": 40.209 }, { "index": 5, "nt1": "///2/1338", "nt2": "///2/1488", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.298, -0.098, -1.020, -10.214, 10.268, -10.641 ], "step_params": [ 0.373, -2.421, 5.314, 0.904, 4.199, 46.562 ], "heli_params": [ -3.608, -0.350, 5.095, 5.299, -1.140, 46.749 ], "bp2_params": [ 0.055, -0.895, 1.819, 8.421, 14.532, 15.743 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.314, "simple_Twist": 38.987, "simple_hRise": 5.043, "simple_hTwist": 39.214 }, { "index": 6, "nt1": "///2/1340", "nt2": "///2/1487", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.055, -0.895, 1.819, 8.421, 14.532, 15.743 ], "step_params": [ 1.615, -0.791, 5.096, -3.106, 6.159, -28.876 ], "heli_params": [ -0.542, 2.100, 5.289, -12.133, -6.119, -29.671 ], "bp2_params": [ -3.117, 6.312, 0.879, -9.176, 21.281, -166.528 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.096, "simple_Twist": 5.298, "simple_hRise": 1.970, "simple_hTwist": 8.696 }, { "index": 7, "nt1": "///2/1341", "nt2": "///2/1485", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "--", "DSSR": "--" } ] }, { "index": 45, "num_stems": 1, "strand1": "GUUGGU", "strand2": "GCAGCA", "bp_type": "..|.||", "helix_form": ".x...", "helical_rise": 2.847, "helical_rise_std": 0.774, "helical_radius": 10.300, "helical_radius_std": 1.060, "helical_axis": [ 0.523, -0.455, -0.721 ], "point1": [ 160.659, 203.011, 219.016 ], "point2": [ 167.991, 196.633, 208.901 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/1345", "nt2": "///2/1385", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "bp1_params": [ -3.830, -1.799, 2.117, 23.967, 31.577, 63.686 ], "step_params": [ -1.796, -1.075, 3.914, 22.521, 6.755, 44.004 ], "heli_params": [ -1.810, 3.904, 2.582, 8.346, -27.827, 49.615 ], "bp2_params": [ 0.105, -1.502, 0.941, 0.212, 12.823, 25.071 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.914, "simple_Twist": 5.456, "simple_hRise": -1.084, "simple_hTwist": 24.128 }, { "index": 2, "nt1": "///2/1346", "nt2": "///2/1384", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.105, -1.502, 0.941, 0.212, 12.823, 25.071 ], "step_params": [ 1.167, -2.362, 5.487, -1.012, 3.095, 42.509 ], "heli_params": [ -3.762, -1.773, 5.283, 4.261, 1.394, 42.628 ], "bp2_params": [ -0.104, -0.120, -0.808, 9.856, 2.258, -1.164 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.487, "simple_Twist": 43.968, "simple_hRise": 5.291, "simple_hTwist": 44.082 }, { "index": 3, "nt1": "///2/1347", "nt2": "///2/1382", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.104, -0.120, -0.808, 9.856, 2.258, -1.164 ], "step_params": [ -0.026, -1.323, 3.667, 8.586, 1.766, 146.765 ], "heli_params": [ -0.699, 0.056, 3.660, 0.921, -4.480, 146.865 ], "bp2_params": [ -2.263, -2.926, -0.215, 27.930, -2.094, 89.312 ], "groove_widths": [ 20.181, null, 19.243, null ], "simple_Rise": 3.667, "simple_Twist": 23.787, "simple_hRise": 3.348, "simple_hTwist": 25.329 }, { "index": 4, "nt1": "///2/1348", "nt2": "///2/1381", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ -2.263, -2.926, -0.215, 27.930, -2.094, 89.312 ], "step_params": [ -2.920, 1.201, 3.170, 7.093, 23.248, -90.490 ], "heli_params": [ -1.251, -1.884, 3.042, -16.136, 4.923, -93.009 ], "bp2_params": [ -0.134, -0.289, 0.709, -18.879, 1.043, -0.197 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.170, "simple_Twist": 32.583, "simple_hRise": 2.746, "simple_hTwist": 40.453 }, { "index": 5, "nt1": "///2/1349", "nt2": "///2/1380", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.134, -0.289, 0.709, -18.879, 1.043, -0.197 ], "step_params": [ 0.131, -1.670, 3.806, -10.754, 6.642, 37.876 ], "heli_params": [ -3.309, -1.585, 3.321, 9.901, 16.031, 39.856 ], "bp2_params": [ -0.030, -0.433, 2.268, -33.213, 24.650, 7.315 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.806, "simple_Twist": 39.089, "simple_hRise": 3.342, "simple_hTwist": 41.005 }, { "index": 6, "nt1": "///2/1350", "nt2": "///2/1379", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 46, "num_stems": 1, "strand1": "CGGU", "strand2": "GCCU", "bp_type": "|||.", "helix_form": "xA.", "helical_rise": 3.780, "helical_rise_std": 0.126, "helical_radius": 8.853, "helical_radius_std": 1.303, "helical_axis": [ 0.065, 0.736, 0.674 ], "point1": [ 154.588, 206.167, 207.247 ], "point2": [ 155.336, 214.675, 215.044 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1363", "nt2": "///2/1375", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.146, -0.248, -0.788, 3.427, 2.126, -1.333 ], "step_params": [ -2.864, -0.518, 3.825, -1.719, 1.986, 54.956 ], "heli_params": [ -0.700, 2.981, 3.886, 2.150, 1.861, 55.013 ], "bp2_params": [ -0.172, -0.124, 0.047, 2.121, 0.120, 0.269 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.825, "simple_Twist": 56.906, "simple_hRise": 3.884, "simple_hTwist": 56.961 }, { "index": 2, "nt1": "///2/1365", "nt2": "///2/1374", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.172, -0.124, 0.047, 2.121, 0.120, 0.269 ], "step_params": [ -0.238, -1.595, 3.272, -0.422, 5.196, 33.029 ], "heli_params": [ -3.602, 0.346, 2.996, 9.070, 0.737, 33.426 ], "bp2_params": [ -0.179, -0.182, -0.413, 2.365, 6.649, 0.114 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.272, "simple_Twist": 33.069, "simple_hRise": 2.997, "simple_hTwist": 33.467 }, { "index": 3, "nt1": "///2/1366", "nt2": "///2/1373", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.182, -0.413, 2.365, 6.649, 0.114 ], "step_params": [ 0.068, -1.670, 3.277, -1.827, 3.816, 36.418 ], "heli_params": [ -3.166, -0.353, 3.085, 6.080, 2.912, 36.655 ], "bp2_params": [ 1.503, -1.845, -0.827, 12.091, 2.452, 5.837 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.277, "simple_Twist": 25.266, "simple_hRise": 2.983, "simple_hTwist": 25.612 }, { "index": 4, "nt1": "///2/1367", "nt2": "///2/1372", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 47, "num_stems": 1, "strand1": "CUC", "strand2": "GAG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.679, "helical_rise_std": 0.040, "helical_radius": 8.827, "helical_radius_std": 0.315, "helical_axis": [ -0.723, -0.054, 0.688 ], "point1": [ 160.078, 212.826, 235.571 ], "point2": [ 156.228, 212.540, 239.236 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1389", "nt2": "///2/1481", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.174, -0.324, 1.017, 5.946, 4.807, 1.196 ], "step_params": [ 0.103, -1.904, 3.182, -0.508, 4.398, 40.355 ], "heli_params": [ -3.206, -0.202, 2.965, 6.351, 0.733, 40.587 ], "bp2_params": [ -0.078, -0.285, 0.933, 2.431, 3.688, -0.136 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.182, "simple_Twist": 41.921, "simple_hRise": 2.975, "simple_hTwist": 42.143 }, { "index": 2, "nt1": "///2/1390", "nt2": "///2/1480", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.078, -0.285, 0.933, 2.431, 3.688, -0.136 ], "step_params": [ -0.799, -2.220, 3.027, 0.742, 5.216, 32.357 ], "heli_params": [ -4.715, 1.527, 2.629, 9.282, -1.321, 32.772 ], "bp2_params": [ 0.169, -0.210, 0.570, 3.247, 8.320, 1.338 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.027, "simple_Twist": 30.689, "simple_hRise": 2.604, "simple_hTwist": 31.127 }, { "index": 3, "nt1": "///2/1391", "nt2": "///2/1479", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 48, "num_stems": 3, "strand1": "AAAGUUACGCGACC", "strand2": "UUUCAAUGCGCUGG", "bp_type": ".|||||||||||||", "helix_form": ".x.AAxA.AxAAA", "helical_rise": 3.018, "helical_rise_std": 0.785, "helical_radius": 9.531, "helical_radius_std": 2.194, "helical_axis": [ -0.466, 0.756, 0.459 ], "point1": [ 149.511, 208.739, 268.500 ], "point2": [ 131.112, 238.602, 286.613 ], "num_pairs": 14, "pairs": [ { "index": 1, "nt1": "///2/1401", "nt2": "///2/1445", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 3.006, 0.712, -0.952, -5.536, -4.786, 14.061 ], "step_params": [ -1.252, -0.519, 4.257, -0.250, 1.972, 15.021 ], "heli_params": [ -4.045, 4.485, 4.174, 7.502, 0.950, 15.151 ], "bp2_params": [ 0.098, -0.277, -1.130, -2.041, -2.965, -1.250 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.257, "simple_Twist": 30.114, "simple_hRise": 4.225, "simple_hTwist": 30.178 }, { "index": 2, "nt1": "///2/1402", "nt2": "///2/1444", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.098, -0.277, -1.130, -2.041, -2.965, -1.250 ], "step_params": [ 1.381, 1.862, 3.143, 6.091, 3.345, 99.632 ], "heli_params": [ 1.166, -0.809, 3.247, 2.187, -3.983, 99.810 ], "bp2_params": [ 0.290, 0.135, -0.303, -23.946, -7.336, -0.656 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.143, "simple_Twist": 98.507, "simple_hRise": 3.249, "simple_hTwist": 98.689 }, { "index": 3, "nt1": "///2/1405", "nt2": "///2/1441", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.290, 0.135, -0.303, -23.946, -7.336, -0.656 ], "step_params": [ 1.064, -1.826, 3.383, 6.730, 0.899, 21.614 ], "heli_params": [ -5.002, -0.088, 3.472, 2.324, -17.402, 22.643 ], "bp2_params": [ -0.144, -0.244, -1.035, -8.562, -2.122, 0.645 ], "groove_widths": [ 15.243, null, 11.537, null ], "simple_Rise": 3.383, "simple_Twist": 24.405, "simple_hRise": 3.478, "simple_hTwist": 25.318 }, { "index": 4, "nt1": "///2/1406", "nt2": "///2/1440", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.144, -0.244, -1.035, -8.562, -2.122, 0.645 ], "step_params": [ -0.116, -1.509, 3.430, -3.682, 0.508, 32.962 ], "heli_params": [ -2.733, -0.444, 3.400, 0.892, 6.463, 33.165 ], "bp2_params": [ -0.061, -0.167, -0.695, -7.190, 2.166, -2.111 ], "groove_widths": [ 15.808, 13.482, 20.782, 16.299 ], "simple_Rise": 3.430, "simple_Twist": 32.435, "simple_hRise": 3.399, "simple_hTwist": 32.642 }, { "index": 5, "nt1": "///2/1407", "nt2": "///2/1439", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.061, -0.167, -0.695, -7.190, 2.166, -2.111 ], "step_params": [ 0.573, -1.561, 3.287, -4.957, 3.795, 34.017 ], "heli_params": [ -3.194, -1.704, 2.990, 6.419, 8.386, 34.569 ], "bp2_params": [ -0.030, -0.092, -0.123, -5.142, 6.795, 1.226 ], "groove_widths": [ 16.938, 15.702, 15.369, 15.134 ], "simple_Rise": 3.287, "simple_Twist": 33.849, "simple_hRise": 2.988, "simple_hTwist": 34.404 }, { "index": 6, "nt1": "///2/1408", "nt2": "///2/1438", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.030, -0.092, -0.123, -5.142, 6.795, 1.226 ], "step_params": [ 1.082, -1.368, 2.595, -3.015, 13.506, 47.135 ], "heli_params": [ -2.395, -1.471, 2.083, 16.479, 3.678, 49.013 ], "bp2_params": [ 0.038, -0.180, 0.687, -2.082, -0.238, -1.026 ], "groove_widths": [ 17.420, 15.511, 15.673, 14.937 ], "simple_Rise": 2.595, "simple_Twist": 46.445, "simple_hRise": 2.073, "simple_hTwist": 48.353 }, { "index": 7, "nt1": "///2/1409", "nt2": "///2/1432", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.038, -0.180, 0.687, -2.082, -0.238, -1.026 ], "step_params": [ -0.211, -1.643, 3.150, -0.900, 2.650, 37.633 ], "heli_params": [ -2.865, 0.217, 3.035, 4.100, 1.392, 37.733 ], "bp2_params": [ 0.190, -0.199, 0.609, 0.942, 3.707, 1.723 ], "groove_widths": [ 18.321, 15.975, 16.092, 13.066 ], "simple_Rise": 3.150, "simple_Twist": 36.946, "simple_hRise": 3.033, "simple_hTwist": 37.048 }, { "index": 8, "nt1": "///2/1410", "nt2": "///2/1431", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.190, -0.199, 0.609, 0.942, 3.707, 1.723 ], "step_params": [ -1.502, -2.486, 2.943, -0.264, 13.923, 21.003 ], "heli_params": [ -8.487, 3.396, 1.118, 33.818, 0.640, 25.157 ], "bp2_params": [ -0.198, -0.154, -0.465, 1.129, -7.045, 1.903 ], "groove_widths": [ 18.193, 15.999, 19.461, 15.628 ], "simple_Rise": 2.943, "simple_Twist": 23.257, "simple_hRise": 1.288, "simple_hTwist": 27.058 }, { "index": 9, "nt1": "///2/1411", "nt2": "///2/1430", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.154, -0.465, 1.129, -7.045, 1.903 ], "step_params": [ 0.157, -1.657, 3.237, -1.113, -0.297, 34.898 ], "heli_params": [ -2.716, -0.428, 3.244, -0.495, 1.855, 34.917 ], "bp2_params": [ 0.193, -0.160, -0.583, 0.916, -6.622, 3.539 ], "groove_widths": [ 16.487, 14.657, 15.335, 12.462 ], "simple_Rise": 3.237, "simple_Twist": 32.507, "simple_hRise": 3.244, "simple_hTwist": 32.527 }, { "index": 10, "nt1": "///2/1412", "nt2": "///2/1429", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.160, -0.583, 0.916, -6.622, 3.539 ], "step_params": [ 0.694, -1.716, 3.516, -12.043, 6.040, 41.209 ], "heli_params": [ -2.926, -2.134, 2.942, 8.318, 16.584, 43.264 ], "bp2_params": [ -0.207, -0.138, 0.211, -7.530, 10.226, 2.077 ], "groove_widths": [ 16.725, 14.201, 14.963, 12.531 ], "simple_Rise": 3.516, "simple_Twist": 43.659, "simple_hRise": 2.983, "simple_hTwist": 45.593 }, { "index": 11, "nt1": "///2/1413", "nt2": "///2/1427", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.207, -0.138, 0.211, -7.530, 10.226, 2.077 ], "step_params": [ -0.156, -1.793, 3.231, -4.679, 7.304, 32.642 ], "heli_params": [ -4.195, -0.440, 2.772, 12.718, 8.147, 33.745 ], "bp2_params": [ 0.007, -0.144, 0.266, -2.669, 20.747, 4.719 ], "groove_widths": [ 18.202, null, 15.461, null ], "simple_Rise": 3.231, "simple_Twist": 31.493, "simple_hRise": 2.751, "simple_hTwist": 32.637 }, { "index": 12, "nt1": "///2/1414", "nt2": "///2/1426", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.007, -0.144, 0.266, -2.669, 20.747, 4.719 ], "step_params": [ 0.089, -2.138, 3.222, 0.129, 8.305, 29.288 ], "heli_params": [ -5.566, -0.147, 2.534, 16.023, -0.250, 30.419 ], "bp2_params": [ 0.144, 0.056, 0.111, 9.127, 31.392, 8.954 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.222, "simple_Twist": 27.874, "simple_hRise": 2.495, "simple_hTwist": 29.062 }, { "index": 13, "nt1": "///2/1415", "nt2": "///2/1425", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.144, 0.056, 0.111, 9.127, 31.392, 8.954 ], "step_params": [ -0.657, -1.846, 3.405, 10.295, 12.783, 29.627 ], "heli_params": [ -5.047, 2.636, 2.118, 22.918, -18.457, 33.780 ], "bp2_params": [ 0.109, -0.239, -0.752, 4.955, 10.112, -2.181 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.405, "simple_Twist": 30.182, "simple_hRise": 2.144, "simple_hTwist": 34.265 }, { "index": 14, "nt1": "///2/1416", "nt2": "///2/1424", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 49, "num_stems": 0, "strand1": "GAGGG", "strand2": "CGACA", "bp_type": "|..|.", "helix_form": ".x.x", "helical_rise": 2.870, "helical_rise_std": 0.643, "helical_radius": 10.160, "helical_radius_std": 1.880, "helical_axis": [ 0.177, -0.188, -0.966 ], "point1": [ 144.038, 211.971, 256.719 ], "point2": [ 146.057, 209.831, 245.714 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/1447", "nt2": "///2/1399", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.406, 0.411, -0.672, -1.291, 0.412, 1.728 ], "step_params": [ -0.388, -1.753, 3.475, 3.284, 10.062, 31.427 ], "heli_params": [ -4.733, 1.221, 2.745, 17.951, -5.858, 33.119 ], "bp2_params": [ 0.400, 1.739, -0.768, -5.203, -14.199, -9.978 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.475, "simple_Twist": 31.588, "simple_hRise": 2.749, "simple_hTwist": 33.271 }, { "index": 2, "nt1": "///2/1448", "nt2": "///2/1398", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.400, 1.739, -0.768, -5.203, -14.199, -9.978 ], "step_params": [ 2.231, -2.200, 3.628, 12.778, 14.641, 77.523 ], "heli_params": [ -2.156, -1.362, 3.511, 11.524, -10.058, 79.548 ], "bp2_params": [ 0.209, 3.859, -0.120, -46.987, -9.403, -99.563 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.628, "simple_Twist": 30.869, "simple_hRise": 2.996, "simple_hTwist": 36.350 }, { "index": 3, "nt1": "///2/1449", "nt2": "///2/1396", "bp": "G+A", "name": "--", "Saenger": "09-IX", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ 0.209, 3.859, -0.120, -46.987, -9.403, -99.563 ], "step_params": [ -0.016, 1.193, 4.173, -2.927, 10.641, -13.192 ], "heli_params": [ -11.742, -2.184, 2.470, -38.632, -10.626, -17.184 ], "bp2_params": [ -0.118, -0.070, -0.610, -21.194, 0.731, -0.206 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.173, "simple_Twist": 36.277, "simple_hRise": 4.329, "simple_hTwist": 37.864 }, { "index": 4, "nt1": "///2/1450", "nt2": "///2/1395", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.118, -0.070, -0.610, -21.194, 0.731, -0.206 ], "step_params": [ -1.433, -0.794, 2.437, -7.976, 17.382, 83.119 ], "heli_params": [ -0.889, 0.924, 2.373, 12.950, 5.942, 84.899 ], "bp2_params": [ 2.780, -3.619, 2.265, -8.508, -13.811, -84.741 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.437, "simple_Twist": -8.824, "simple_hRise": 1.139, "simple_hTwist": -21.045 }, { "index": 5, "nt1": "///2/1451", "nt2": "///2/1474", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W" } ] }, { "index": 50, "num_stems": 0, "strand1": "AC", "strand2": "GA", "bp_type": "..", "helix_form": "x", "helical_rise": 4.893, "helical_rise_std": 0.124, "helical_radius": 5.829, "helical_radius_std": 2.357, "helical_axis": [ 0.217, -0.783, -0.583 ], "point1": [ 142.074, 216.045, 237.816 ], "point2": [ 143.144, 212.177, 234.933 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1452", "nt2": "///2/1473", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ -2.898, 4.187, -0.255, -3.906, -7.389, 73.497 ], "step_params": [ 2.984, 3.395, 2.098, 26.288, -10.663, -20.934 ], "heli_params": [ -4.951, 6.606, 0.074, 20.407, 50.310, -35.128 ], "bp2_params": [ -1.602, 0.444, 1.630, -8.158, -17.361, 31.943 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.098, "simple_Twist": 53.296, "simple_hRise": 2.538, "simple_hTwist": 59.884 }, { "index": 2, "nt1": "///2/1453", "nt2": "///2/1476", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 51, "num_stems": 1, "strand1": "AGUGGCG", "strand2": "CCACCGA", "bp_type": ".|||||.", "helix_form": ".AAAA.", "helical_rise": 2.641, "helical_rise_std": 0.399, "helical_radius": 8.840, "helical_radius_std": 1.195, "helical_axis": [ -0.198, -0.335, -0.921 ], "point1": [ 139.264, 217.539, 230.177 ], "point2": [ 136.128, 212.246, 215.606 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///2/1455", "nt2": "///2/1471", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.638, 1.361, 0.173, 7.738, 19.759, -11.454 ], "step_params": [ 0.286, -2.219, 3.476, 4.613, 19.031, 32.689 ], "heli_params": [ -5.595, 0.090, 1.958, 30.631, -7.425, 37.968 ], "bp2_params": [ -0.218, -0.169, -0.595, -5.252, -7.764, 2.088 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.476, "simple_Twist": 41.442, "simple_hRise": 2.313, "simple_hTwist": 45.650 }, { "index": 2, "nt1": "///2/1456", "nt2": "///2/1470", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.218, -0.169, -0.595, -5.252, -7.764, 2.088 ], "step_params": [ -0.982, -1.323, 3.389, -2.159, 1.056, 32.977 ], "heli_params": [ -2.510, 1.346, 3.402, 1.857, 3.797, 33.062 ], "bp2_params": [ -0.145, -0.228, -0.942, -2.651, -3.008, -3.208 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.389, "simple_Twist": 32.596, "simple_hRise": 3.402, "simple_hTwist": 32.683 }, { "index": 3, "nt1": "///2/1457", "nt2": "///2/1469", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.145, -0.228, -0.942, -2.651, -3.008, -3.208 ], "step_params": [ 0.366, -0.879, 3.582, -5.443, 23.043, 31.204 ], "heli_params": [ -4.143, -1.216, 2.330, 36.916, 8.720, 38.991 ], "bp2_params": [ -0.162, -0.191, -0.755, -8.812, -1.401, 0.548 ], "groove_widths": [ 18.120, null, 13.760, null ], "simple_Rise": 3.582, "simple_Twist": 31.465, "simple_hRise": 2.342, "simple_hTwist": 39.198 }, { "index": 4, "nt1": "///2/1458", "nt2": "///2/1468", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.162, -0.191, -0.755, -8.812, -1.401, 0.548 ], "step_params": [ -0.152, -1.529, 3.366, -3.335, 3.185, 32.326 ], "heli_params": [ -3.279, -0.313, 3.204, 5.684, 5.952, 32.645 ], "bp2_params": [ -0.114, -0.188, -0.790, -8.899, 5.361, -0.874 ], "groove_widths": [ 17.814, null, 17.414, null ], "simple_Rise": 3.366, "simple_Twist": 32.257, "simple_hRise": 3.204, "simple_hTwist": 32.577 }, { "index": 5, "nt1": "///2/1459", "nt2": "///2/1467", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.114, -0.188, -0.790, -8.899, 5.361, -0.874 ], "step_params": [ 0.032, -1.857, 3.246, -4.725, 4.213, 33.920 ], "heli_params": [ -3.758, -0.756, 2.970, 7.144, 8.012, 34.488 ], "bp2_params": [ 0.212, -0.158, -0.196, -4.605, 13.608, -0.173 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.246, "simple_Twist": 32.016, "simple_hRise": 2.950, "simple_hTwist": 32.620 }, { "index": 6, "nt1": "///2/1460", "nt2": "///2/1466", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.212, -0.158, -0.196, -4.605, 13.608, -0.173 ], "step_params": [ -2.121, -0.909, 2.913, -1.801, 19.150, 49.435 ], "heli_params": [ -2.086, 2.284, 2.498, 21.963, 2.066, 52.825 ], "bp2_params": [ 6.707, -4.609, 1.343, 0.089, -2.938, -7.072 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.913, "simple_Twist": 4.257, "simple_hRise": -0.057, "simple_hTwist": 19.696 }, { "index": 7, "nt1": "///2/1461", "nt2": "///2/1465", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 52, "num_stems": 2, "strand1": "CGACUGGC", "strand2": "GCUUACCC", "bp_type": ".||.|||.", "helix_form": "x...AA.", "helical_rise": 3.000, "helical_rise_std": 0.952, "helical_radius": 8.844, "helical_radius_std": 1.246, "helical_axis": [ 0.048, -0.858, 0.511 ], "point1": [ 155.407, 267.339, 251.494 ], "point2": [ 156.418, 249.372, 262.203 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///2/1534", "nt2": "///2/1598", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ 1.333, 4.478, -1.957, -18.755, 1.152, 127.127 ], "step_params": [ 0.930, 1.331, 3.753, 28.817, 23.856, -72.339 ], "heli_params": [ -1.714, 1.544, 2.808, -19.030, 22.988, -80.251 ], "bp2_params": [ -0.233, -0.142, -0.603, -7.223, -2.936, 2.903 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.753, "simple_Twist": 17.926, "simple_hRise": 3.061, "simple_hTwist": 41.345 }, { "index": 2, "nt1": "///2/1536", "nt2": "///2/1597", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.233, -0.142, -0.603, -7.223, -2.936, 2.903 ], "step_params": [ -1.736, -1.280, 3.426, -5.327, 6.251, 32.280 ], "heli_params": [ -3.334, 2.094, 3.362, 11.022, 9.393, 33.281 ], "bp2_params": [ 0.118, -0.306, -1.223, -4.732, -3.175, -3.308 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.426, "simple_Twist": 30.352, "simple_hRise": 3.351, "simple_hTwist": 31.418 }, { "index": 3, "nt1": "///2/1537", "nt2": "///2/1596", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.118, -0.306, -1.223, -4.732, -3.175, -3.308 ], "step_params": [ -1.279, -1.804, 3.217, -1.725, 2.057, 38.671 ], "heli_params": [ -2.964, 1.721, 3.173, 3.101, 2.601, 38.760 ], "bp2_params": [ 0.875, -0.427, -1.035, -6.601, -1.804, -26.445 ], "groove_widths": [ 16.586, null, 14.765, null ], "simple_Rise": 3.217, "simple_Twist": 34.921, "simple_hRise": 3.166, "simple_hTwist": 35.021 }, { "index": 4, "nt1": "///2/1538", "nt2": "///2/1595", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.875, -0.427, -1.035, -6.601, -1.804, -26.445 ], "step_params": [ 1.523, -2.083, 3.036, -1.230, 4.651, 25.039 ], "heli_params": [ -5.865, -3.755, 2.537, 10.602, 2.804, 25.490 ], "bp2_params": [ -0.029, -0.115, -0.592, -0.071, -0.802, 1.439 ], "groove_widths": [ 17.030, 15.623, 14.387, 10.055 ], "simple_Rise": 3.036, "simple_Twist": 29.965, "simple_hRise": 2.627, "simple_hTwist": 30.340 }, { "index": 5, "nt1": "///2/1539", "nt2": "///2/1594", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.029, -0.115, -0.592, -0.071, -0.802, 1.439 ], "step_params": [ 0.729, -1.379, 2.825, -5.609, 20.918, 33.419 ], "heli_params": [ -3.837, -1.558, 1.588, 32.487, 8.711, 39.654 ], "bp2_params": [ -0.192, -0.125, 0.366, 3.032, -2.794, 1.103 ], "groove_widths": [ 17.530, null, 14.644, null ], "simple_Rise": 2.825, "simple_Twist": 34.102, "simple_hRise": 1.615, "simple_hTwist": 40.224 }, { "index": 6, "nt1": "///2/1540", "nt2": "///2/1593", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.192, -0.125, 0.366, 3.032, -2.794, 1.103 ], "step_params": [ -0.049, -1.821, 3.091, 2.011, 2.533, 33.340 ], "heli_params": [ -3.545, 0.391, 2.941, 4.402, -3.496, 33.492 ], "bp2_params": [ -0.181, -0.133, -0.151, 4.768, -8.320, 2.982 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.091, "simple_Twist": 33.718, "simple_hRise": 2.943, "simple_hTwist": 33.868 }, { "index": 7, "nt1": "///2/1541", "nt2": "///2/1592", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.181, -0.133, -0.151, 4.768, -8.320, 2.982 ], "step_params": [ -0.791, -1.609, 3.626, 5.496, -1.728, 52.213 ], "heli_params": [ -1.694, 1.291, 3.579, -1.957, -6.224, 52.508 ], "bp2_params": [ 3.142, -1.136, -0.705, -7.815, -17.062, -13.689 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.626, "simple_Twist": 33.900, "simple_hRise": 3.533, "simple_hTwist": 34.372 }, { "index": 8, "nt1": "///2/1542", "nt2": "///2/1591", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 53, "num_stems": 0, "strand1": "CG", "strand2": "UG", "bp_type": "..", "helix_form": "x", "helical_rise": 3.342, "helical_rise_std": 0.026, "helical_radius": 8.540, "helical_radius_std": 5.280, "helical_axis": [ 0.184, -0.816, 0.547 ], "point1": [ 157.445, 230.600, 265.904 ], "point2": [ 158.063, 227.856, 267.743 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1547", "nt2": "///2/1586", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "bp1_params": [ 0.069, 5.397, -1.116, -13.759, -31.436, -160.123 ], "step_params": [ 3.983, -2.748, 3.495, 10.504, -11.599, 27.724 ], "heli_params": [ -1.942, -4.488, 5.335, -22.116, -20.027, 31.759 ], "bp2_params": [ -2.207, 1.919, 0.307, 14.793, -6.706, -70.807 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.495, "simple_Twist": 19.741, "simple_hRise": 5.655, "simple_hTwist": 25.142 }, { "index": 2, "nt1": "///2/1548", "nt2": "///2/1584", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..-W" } ] }, { "index": 54, "num_stems": 1, "strand1": "CCU", "strand2": "GGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 3.575, "helical_rise_std": 0.130, "helical_radius": 9.062, "helical_radius_std": 1.373, "helical_axis": [ -0.226, 0.960, 0.164 ], "point1": [ 173.728, 223.160, 276.698 ], "point2": [ 172.083, 230.147, 277.890 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1558", "nt2": "///2/1577", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.214, -0.191, -0.677, -3.350, -3.700, 2.349 ], "step_params": [ -0.706, -0.801, 2.836, 4.182, 10.963, 32.469 ], "heli_params": [ -2.744, 1.722, 2.345, 18.856, -7.192, 34.470 ], "bp2_params": [ 0.035, -0.221, -1.099, 15.800, 6.601, -3.494 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.836, "simple_Twist": 33.308, "simple_hRise": 2.360, "simple_hTwist": 35.259 }, { "index": 2, "nt1": "///2/1559", "nt2": "///2/1576", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.035, -0.221, -1.099, 15.800, 6.601, -3.494 ], "step_params": [ 3.062, -0.687, 3.099, 7.280, 3.151, 27.362 ], "heli_params": [ -2.159, -4.465, 3.674, 6.491, -14.995, 28.468 ], "bp2_params": [ 2.732, 0.133, -1.784, 37.090, -4.553, 17.861 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.099, "simple_Twist": 12.072, "simple_hRise": 3.982, "simple_hTwist": 14.437 }, { "index": 3, "nt1": "///2/1560", "nt2": "///2/1575", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 55, "num_stems": 1, "strand1": "GCCG", "strand2": "GGGC", "bp_type": ".||.", "helix_form": "x.x", "helical_rise": 3.036, "helical_rise_std": 1.669, "helical_radius": 9.198, "helical_radius_std": 4.195, "helical_axis": [ -0.089, 0.939, 0.331 ], "point1": [ 166.795, 240.193, 280.182 ], "point2": [ 165.989, 248.725, 283.189 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1563", "nt2": "///2/1573", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "bp1_params": [ 4.060, 0.702, 0.689, -44.899, 27.988, 16.060 ], "step_params": [ 2.672, -2.226, 4.381, -6.099, 9.822, 31.489 ], "heli_params": [ -5.752, -5.810, 3.015, 17.382, 10.794, 33.494 ], "bp2_params": [ 0.107, -0.305, -0.966, -4.520, 19.585, -6.762 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.381, "simple_Twist": 50.574, "simple_hRise": 3.596, "simple_hTwist": 51.794 }, { "index": 2, "nt1": "///2/1564", "nt2": "///2/1571", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.107, -0.305, -0.966, -4.520, 19.585, -6.762 ], "step_params": [ 0.865, -1.590, 3.149, 5.384, 24.826, 37.877 ], "heli_params": [ -3.942, -0.715, 1.912, 33.988, -7.371, 45.345 ], "bp2_params": [ 0.157, -0.255, -0.900, -3.594, 1.934, -0.274 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.149, "simple_Twist": 37.600, "simple_hRise": 1.902, "simple_hTwist": 45.119 }, { "index": 3, "nt1": "///2/1565", "nt2": "///2/1570", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.157, -0.255, -0.900, -3.594, 1.934, -0.274 ], "step_params": [ -3.532, -0.423, 4.611, -5.519, 26.526, 71.101 ], "heli_params": [ -1.507, 2.645, 4.477, 22.038, 4.585, 75.448 ], "bp2_params": [ 6.845, -7.546, -1.410, 25.772, 7.966, -57.827 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.611, "simple_Twist": 11.970, "simple_hRise": 2.163, "simple_hTwist": 29.575 }, { "index": 4, "nt1": "///2/1566", "nt2": "///2/1568", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 56, "num_stems": 2, "strand1": "UAAGUGCGGGU", "strand2": "AGUUGCGUUCA", "bp_type": "..|||||.||.", "helix_form": "..A..AAAAx", "helical_rise": 3.148, "helical_rise_std": 0.643, "helical_radius": 8.534, "helical_radius_std": 2.459, "helical_axis": [ 0.853, 0.045, 0.519 ], "point1": [ 152.754, 233.679, 239.835 ], "point2": [ 179.713, 235.110, 256.236 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///2/1649", "nt2": "///2/1675", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 1.943, -1.854, -2.116, -37.200, -14.493, -70.501 ], "step_params": [ 1.884, 1.897, 3.110, -26.348, -16.807, -4.576 ], "heli_params": [ 1.753, -4.754, 3.037, 44.032, -69.029, -31.577 ], "bp2_params": [ -6.711, -3.371, 1.181, -7.383, 0.920, -14.984 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.110, "simple_Twist": 49.455, "simple_hRise": 1.368, "simple_hTwist": 57.972 }, { "index": 2, "nt1": "///2/1650", "nt2": "///2/1674", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.711, -3.371, 1.181, -7.383, 0.920, -14.984 ], "step_params": [ 0.939, -0.705, 2.845, -0.844, 4.062, 58.728 ], "heli_params": [ -0.898, -0.993, 2.783, 4.137, 0.860, 58.861 ], "bp2_params": [ 0.100, -0.142, 0.694, 5.402, 1.396, -1.033 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.845, "simple_Twist": 18.038, "simple_hRise": 2.578, "simple_hTwist": 18.505 }, { "index": 3, "nt1": "///2/1651", "nt2": "///2/1673", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.100, -0.142, 0.694, 5.402, 1.396, -1.033 ], "step_params": [ 0.110, -1.811, 2.881, -3.478, 13.257, 29.194 ], "heli_params": [ -5.079, -0.674, 1.878, 24.660, 6.470, 32.187 ], "bp2_params": [ -1.867, -0.415, 0.420, 7.705, 9.138, -1.480 ], "groove_widths": [ 18.540, null, 13.466, null ], "simple_Rise": 2.881, "simple_Twist": 39.906, "simple_hRise": 2.181, "simple_hTwist": 42.103 }, { "index": 4, "nt1": "///2/1652", "nt2": "///2/1672", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.867, -0.415, 0.420, 7.705, 9.138, -1.480 ], "step_params": [ 0.867, -1.624, 2.995, 6.132, 4.309, 48.502 ], "heli_params": [ -2.253, -0.623, 2.932, 5.209, -7.412, 49.043 ], "bp2_params": [ 1.658, -0.405, -0.608, 15.368, 0.790, -3.427 ], "groove_widths": [ 17.905, 16.000, 15.361, 12.157 ], "simple_Rise": 2.995, "simple_Twist": 29.811, "simple_hRise": 2.856, "simple_hTwist": 30.717 }, { "index": 5, "nt1": "///2/1653", "nt2": "///2/1671", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.658, -0.405, -0.608, 15.368, 0.790, -3.427 ], "step_params": [ -0.030, -1.662, 3.788, 5.688, 22.547, 17.629 ], "heli_params": [ -7.880, 1.214, 1.027, 51.703, -13.043, 29.107 ], "bp2_params": [ -0.237, -0.152, -0.589, -5.353, -10.162, 3.544 ], "groove_widths": [ 17.067, 15.319, 18.120, 15.503 ], "simple_Rise": 3.788, "simple_Twist": 27.402, "simple_hRise": 1.889, "simple_hTwist": 35.794 }, { "index": 6, "nt1": "///2/1654", "nt2": "///2/1670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.237, -0.152, -0.589, -5.353, -10.162, 3.544 ], "step_params": [ -1.088, -1.716, 3.306, -5.120, -3.152, 35.771 ], "heli_params": [ -2.291, 0.990, 3.556, -5.088, 8.263, 36.256 ], "bp2_params": [ 0.171, -0.173, -0.489, -3.054, -4.411, 0.223 ], "groove_widths": [ 16.294, 14.908, 18.194, 16.067 ], "simple_Rise": 3.306, "simple_Twist": 33.480, "simple_hRise": 3.571, "simple_hTwist": 34.000 }, { "index": 7, "nt1": "///2/1655", "nt2": "///2/1669", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.171, -0.173, -0.489, -3.054, -4.411, 0.223 ], "step_params": [ -1.008, -2.020, 3.588, -6.124, 5.206, 25.056 ], "heli_params": [ -5.941, 0.450, 3.259, 11.625, 13.675, 26.294 ], "bp2_params": [ -0.740, -0.614, -0.313, -7.186, 0.004, -10.687 ], "groove_widths": [ 16.630, 15.127, 15.947, 14.421 ], "simple_Rise": 3.588, "simple_Twist": 29.854, "simple_hRise": 3.333, "simple_hTwist": 30.893 }, { "index": 8, "nt1": "///2/1656", "nt2": "///2/1668", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.740, -0.614, -0.313, -7.186, 0.004, -10.687 ], "step_params": [ -0.286, -1.533, 3.096, -5.031, 5.527, 36.662 ], "heli_params": [ -3.060, -0.163, 2.856, 8.676, 7.897, 37.390 ], "bp2_params": [ -1.172, -0.471, -0.059, -5.780, 3.910, -9.143 ], "groove_widths": [ 17.299, null, 13.641, null ], "simple_Rise": 3.096, "simple_Twist": 39.173, "simple_hRise": 2.876, "simple_hTwist": 39.852 }, { "index": 9, "nt1": "///2/1657", "nt2": "///2/1667", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.172, -0.471, -0.059, -5.780, 3.910, -9.143 ], "step_params": [ 0.088, -1.536, 3.006, -1.827, 6.297, 39.009 ], "heli_params": [ -2.923, -0.320, 2.728, 9.350, 2.712, 39.535 ], "bp2_params": [ -0.170, -0.135, 0.018, 0.053, 8.903, -0.759 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.006, "simple_Twist": 33.765, "simple_hRise": 2.676, "simple_hTwist": 34.377 }, { "index": 10, "nt1": "///2/1658", "nt2": "///2/1666", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.170, -0.135, 0.018, 0.053, 8.903, -0.759 ], "step_params": [ -1.561, -1.974, 3.699, 6.827, 7.527, 76.951 ], "heli_params": [ -1.810, 1.458, 3.398, 6.024, -5.464, 77.516 ], "bp2_params": [ 4.625, -2.833, 0.445, 2.664, -0.517, -84.506 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.699, "simple_Twist": 47.179, "simple_hRise": 3.126, "simple_hTwist": 48.200 }, { "index": 11, "nt1": "///2/1659", "nt2": "///2/1664", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M" } ] }, { "index": 57, "num_stems": 0, "strand1": "GU", "strand2": "CG", "bp_type": "|.", "helix_form": ".", "helical_rise": 2.134, "helical_rise_std": 0.165, "helical_radius": 11.931, "helical_radius_std": 8.596, "helical_axis": [ 0.911, -0.069, 0.406 ], "point1": [ 286.458, 134.727, 92.355 ], "point2": [ 288.485, 134.572, 93.258 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1760", "nt2": "///2/1772", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.169, -0.299, 1.021, 3.319, 2.944, 1.734 ], "step_params": [ 3.106, -1.221, 4.998, -3.936, 16.581, 47.843 ], "heli_params": [ -3.118, -4.034, 4.137, 19.730, 4.683, 50.619 ], "bp2_params": [ 6.264, -0.923, -0.947, -19.326, 47.060, 50.577 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.998, "simple_Twist": 4.349, "simple_hRise": -0.605, "simple_hTwist": 17.583 }, { "index": 2, "nt1": "///2/1761", "nt2": "///2/1771", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W" } ] }, { "index": 58, "num_stems": 10, "strand1": "GGCGGGCUGAGAAGACGGUCGAACUUACUAUCUAAGGAGUAAGUCGAACGG", "strand2": "CCGCCCGGCUAGGCUCCCGGAGUGAUUGGUAGGUGCCACAUCCUGCCCGCA", "bp_type": "|||||||.||...||.||.|..|||.||||||.|.||.|||.|.||..|..", "helix_form": "..xxxA..A.......AAA....A.xx..A..xx.A.xAA.x...x..xx", "helical_rise": 3.103, "helical_rise_std": 1.748, "helical_radius": 11.263, "helical_radius_std": 5.290, "helical_axis": [ -0.686, 0.390, 0.614 ], "point1": [ 296.053, 168.914, 105.415 ], "point2": [ 189.726, 229.467, 200.689 ], "num_pairs": 51, "pairs": [ { "index": 1, "nt1": "///2/1776", "nt2": "///2/1756", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.211, -0.194, 0.531, 0.303, 0.884, 0.122 ], "step_params": [ -3.460, -0.347, 3.944, 2.851, 3.022, 13.220 ], "heli_params": [ -4.627, 17.352, 2.980, 12.723, -12.004, 13.854 ], "bp2_params": [ -0.164, -0.235, -0.589, 4.682, 1.141, -1.713 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.944, "simple_Twist": 12.986, "simple_hRise": 2.961, "simple_hTwist": 13.632 }, { "index": 2, "nt1": "///2/1777", "nt2": "///2/1755", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, -0.235, -0.589, 4.682, 1.141, -1.713 ], "step_params": [ 0.290, -0.165, 5.107, 0.346, 1.532, 27.134 ], "heli_params": [ -0.951, -0.481, 5.093, 3.262, -0.738, 27.178 ], "bp2_params": [ 0.133, -0.496, 1.253, 5.699, -5.330, -5.151 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.107, "simple_Twist": 25.993, "simple_hRise": 5.092, "simple_hTwist": 26.039 }, { "index": 3, "nt1": "///2/1778", "nt2": "///2/1754", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.133, -0.496, 1.253, 5.699, -5.330, -5.151 ], "step_params": [ 0.452, 1.843, 6.905, 31.787, 28.850, 32.267 ], "heli_params": [ -2.454, 4.466, 5.516, 36.796, -40.542, 53.240 ], "bp2_params": [ -0.258, -0.110, 1.097, 14.350, 4.368, 6.828 ], "groove_widths": [ 29.323, null, 13.232, null ], "simple_Rise": 6.905, "simple_Twist": 34.120, "simple_hRise": 5.643, "simple_hTwist": 54.329 }, { "index": 4, "nt1": "///2/1780", "nt2": "///2/1753", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.258, -0.110, 1.097, 14.350, 4.368, 6.828 ], "step_params": [ 2.531, -2.385, 6.655, -7.573, 25.207, 46.243 ], "heli_params": [ -5.668, -3.741, 4.455, 29.469, 8.853, 52.849 ], "bp2_params": [ -0.228, -0.211, -0.336, 7.553, 16.307, -1.309 ], "groove_widths": [ 28.017, 19.320, 11.106, 10.125 ], "simple_Rise": 6.655, "simple_Twist": 45.778, "simple_hRise": 4.428, "simple_hTwist": 52.450 }, { "index": 5, "nt1": "///2/1782", "nt2": "///2/1751", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.228, -0.211, -0.336, 7.553, 16.307, -1.309 ], "step_params": [ 2.028, -1.432, 4.437, 20.569, 61.300, 37.554 ], "heli_params": [ -3.891, -0.785, 1.779, 59.767, -20.055, 73.737 ], "bp2_params": [ -0.498, -0.549, -0.689, -12.908, -27.914, -3.481 ], "groove_widths": [ 24.775, 18.014, 14.830, 12.424 ], "simple_Rise": 4.437, "simple_Twist": 38.540, "simple_hRise": 1.832, "simple_hTwist": 74.188 }, { "index": 6, "nt1": "///2/1784", "nt2": "///2/1750", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.498, -0.549, -0.689, -12.908, -27.914, -3.481 ], "step_params": [ -0.712, -1.425, 3.749, -6.049, -4.481, 32.561 ], "heli_params": [ -1.592, 0.042, 3.969, -7.862, 10.612, 33.397 ], "bp2_params": [ 0.205, -0.248, -0.764, -10.281, -9.829, 3.774 ], "groove_widths": [ 20.297, 15.139, 20.719, 20.344 ], "simple_Rise": 3.749, "simple_Twist": 29.169, "simple_hRise": 3.983, "simple_hTwist": 30.105 }, { "index": 7, "nt1": "///2/1785", "nt2": "///2/1749", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.205, -0.248, -0.764, -10.281, -9.829, 3.774 ], "step_params": [ 0.197, -0.726, 3.857, -1.744, -0.710, 45.788 ], "heli_params": [ -0.859, -0.431, 3.857, -0.913, 2.241, 45.824 ], "bp2_params": [ 3.889, -1.379, -0.742, -4.313, -3.489, 0.026 ], "groove_widths": [ 17.343, 14.763, 18.086, 16.897 ], "simple_Rise": 3.857, "simple_Twist": 24.626, "simple_hRise": 3.853, "simple_hTwist": 24.697 }, { "index": 8, "nt1": "///2/1786", "nt2": "///2/1748", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 3.889, -1.379, -0.742, -4.313, -3.489, 0.026 ], "step_params": [ -0.862, -2.428, 3.186, -4.515, 20.458, 9.752 ], "heli_params": [ -10.037, 1.278, -0.624, 63.775, 14.077, 23.086 ], "bp2_params": [ -0.179, -0.120, -0.050, 0.010, -0.739, 1.201 ], "groove_widths": [ 18.135, 16.503, 18.073, 15.659 ], "simple_Rise": 3.186, "simple_Twist": 33.432, "simple_hRise": 1.594, "simple_hTwist": 39.295 }, { "index": 9, "nt1": "///2/1787", "nt2": "///2/1747", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.120, -0.050, 0.010, -0.739, 1.201 ], "step_params": [ 0.130, -1.544, 3.361, 1.270, 1.991, 31.310 ], "heli_params": [ -3.231, 0.001, 3.261, 3.683, -2.349, 31.396 ], "bp2_params": [ 0.052, -0.155, -0.703, 2.098, 0.049, 2.429 ], "groove_widths": [ 17.652, 15.888, 15.888, 15.430 ], "simple_Rise": 3.361, "simple_Twist": 29.946, "simple_hRise": 3.256, "simple_hTwist": 30.037 }, { "index": 10, "nt1": "///2/1788", "nt2": "///2/1746", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.052, -0.155, -0.703, 2.098, 0.049, 2.429 ], "step_params": [ -0.563, -0.774, 3.886, 2.427, 0.694, 57.978 ], "heli_params": [ -0.841, 0.733, 3.853, 0.716, -2.502, 58.028 ], "bp2_params": [ 6.596, -3.767, -1.093, 4.342, -3.503, -6.281 ], "groove_widths": [ 17.271, 15.390, 16.672, 16.671 ], "simple_Rise": 3.886, "simple_Twist": 16.058, "simple_hRise": 3.723, "simple_hTwist": 16.254 }, { "index": 11, "nt1": "///2/1789", "nt2": "///2/1745", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.596, -3.767, -1.093, 4.342, -3.503, -6.281 ], "step_params": [ 1.332, -1.138, 3.952, 5.045, -2.189, -17.723 ], "heli_params": [ 4.876, 7.228, 3.284, 6.893, 15.885, -18.550 ], "bp2_params": [ -6.510, -4.561, 1.155, -28.131, 24.228, 2.807 ], "groove_widths": [ 17.616, 15.833, 15.781, 15.613 ], "simple_Rise": 3.952, "simple_Twist": 74.170, "simple_hRise": 4.050, "simple_hTwist": 74.344 }, { "index": 12, "nt1": "///2/1790", "nt2": "///2/1744", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.510, -4.561, 1.155, -28.131, 24.228, 2.807 ], "step_params": [ -0.714, -0.981, 3.039, -12.349, 16.589, 35.631 ], "heli_params": [ -3.043, -0.204, 2.478, 24.714, 18.398, 41.029 ], "bp2_params": [ -6.400, -2.573, -0.799, 4.221, -2.134, -8.806 ], "groove_widths": [ 17.932, 15.900, 16.045, 16.013 ], "simple_Rise": 3.039, "simple_Twist": 22.965, "simple_hRise": 2.039, "simple_hTwist": 30.811 }, { "index": 13, "nt1": "///2/1791", "nt2": "///2/1743", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.400, -2.573, -0.799, 4.221, -2.134, -8.806 ], "step_params": [ 0.813, -0.979, 3.690, -1.042, 0.639, 59.680 ], "heli_params": [ -1.019, -0.875, 3.667, 0.642, 1.047, 59.691 ], "bp2_params": [ 0.654, 0.098, -0.275, -0.467, -6.201, -1.071 ], "groove_widths": [ 17.183, 14.670, 14.953, 14.418 ], "simple_Rise": 3.690, "simple_Twist": 19.352, "simple_hRise": 3.607, "simple_hTwist": 19.390 }, { "index": 14, "nt1": "///2/1792", "nt2": "///2/1742", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.654, 0.098, -0.275, -0.467, -6.201, -1.071 ], "step_params": [ -1.136, -1.978, 3.397, -2.417, 10.121, 25.246 ], "heli_params": [ -6.575, 1.842, 2.525, 22.001, 5.253, 27.274 ], "bp2_params": [ 0.174, -0.280, -1.093, 0.694, 4.521, -2.627 ], "groove_widths": [ 16.814, 14.807, 15.189, 13.612 ], "simple_Rise": 3.397, "simple_Twist": 27.607, "simple_hRise": 2.612, "simple_hTwist": 29.468 }, { "index": 15, "nt1": "///2/1793", "nt2": "///2/1741", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.174, -0.280, -1.093, 0.694, 4.521, -2.627 ], "step_params": [ -0.838, -1.579, 3.126, -0.836, 3.626, 27.202 ], "heli_params": [ -4.156, 1.575, 2.919, 7.664, 1.768, 27.450 ], "bp2_params": [ -2.016, -0.820, -1.224, 9.459, -1.646, -15.034 ], "groove_widths": [ 17.324, 15.901, 15.327, 12.433 ], "simple_Rise": 3.126, "simple_Twist": 39.009, "simple_hRise": 2.990, "simple_hTwist": 39.179 }, { "index": 16, "nt1": "///2/1794", "nt2": "///2/1740", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.016, -0.820, -1.224, 9.459, -1.646, -15.034 ], "step_params": [ 0.969, -1.729, 3.624, -10.735, 15.427, 39.333 ], "heli_params": [ -3.809, -2.335, 2.477, 21.494, 14.956, 43.432 ], "bp2_params": [ -0.180, -0.134, -0.224, -3.625, 11.453, 0.373 ], "groove_widths": [ 17.388, 15.807, 13.790, 10.141 ], "simple_Rise": 3.624, "simple_Twist": 29.506, "simple_hRise": 2.040, "simple_hTwist": 34.871 }, { "index": 17, "nt1": "///2/1795", "nt2": "///2/1739", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.180, -0.134, -0.224, -3.625, 11.453, 0.373 ], "step_params": [ -0.475, -1.950, 3.219, 0.969, 9.303, 35.584 ], "heli_params": [ -4.246, 0.873, 2.631, 14.906, -1.553, 36.754 ], "bp2_params": [ -0.167, -0.160, -0.369, -4.187, 1.931, -0.881 ], "groove_widths": [ 17.568, 15.997, 13.326, 10.410 ], "simple_Rise": 3.219, "simple_Twist": 35.433, "simple_hRise": 2.628, "simple_hTwist": 36.608 }, { "index": 18, "nt1": "///2/1796", "nt2": "///2/1738", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.160, -0.369, -4.187, 1.931, -0.881 ], "step_params": [ -0.733, -1.566, 3.219, 1.228, 1.916, 31.679 ], "heli_params": [ -3.201, 1.557, 3.091, 3.504, -2.246, 31.758 ], "bp2_params": [ -0.252, 0.128, -0.504, 0.189, 5.721, -14.935 ], "groove_widths": [ 17.616, 16.206, 14.280, 12.163 ], "simple_Rise": 3.219, "simple_Twist": 32.074, "simple_hRise": 3.093, "simple_hTwist": 32.153 }, { "index": 19, "nt1": "///2/1797", "nt2": "///2/1737", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.252, 0.128, -0.504, 0.189, 5.721, -14.935 ], "step_params": [ 0.104, -1.356, 3.244, 0.718, 2.548, 31.600 ], "heli_params": [ -2.939, -0.062, 3.129, 4.669, -1.315, 31.708 ], "bp2_params": [ -0.436, 0.262, -0.463, 8.722, 6.058, -10.828 ], "groove_widths": [ 17.828, 16.417, 12.775, 11.631 ], "simple_Rise": 3.244, "simple_Twist": 32.325, "simple_hRise": 3.132, "simple_hTwist": 32.431 }, { "index": 20, "nt1": "///2/1798", "nt2": "///2/1736", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.436, 0.262, -0.463, 8.722, 6.058, -10.828 ], "step_params": [ 1.004, -1.581, 3.509, 4.409, 1.776, 54.411 ], "heli_params": [ -1.838, -0.808, 3.525, 1.938, -4.812, 54.603 ], "bp2_params": [ 7.016, -4.216, -1.185, 9.080, -3.481, -25.518 ], "groove_widths": [ 18.374, 16.818, 13.618, 13.161 ], "simple_Rise": 3.509, "simple_Twist": 8.885, "simple_hRise": 3.256, "simple_hTwist": 10.075 }, { "index": 21, "nt1": "///2/1799", "nt2": "///2/1735", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 7.016, -4.216, -1.185, 9.080, -3.481, -25.518 ], "step_params": [ 1.563, -0.916, 3.563, 6.190, 15.641, -15.769 ], "heli_params": [ -3.934, 6.384, 2.651, -43.839, 17.350, -23.018 ], "bp2_params": [ -6.714, -3.747, -0.656, 1.600, -1.862, 0.126 ], "groove_widths": [ 18.023, 16.225, 16.301, 15.697 ], "simple_Rise": 3.563, "simple_Twist": 71.439, "simple_hRise": 3.437, "simple_hTwist": 73.136 }, { "index": 22, "nt1": "///2/1800", "nt2": "///2/1734", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.714, -3.747, -0.656, 1.600, -1.862, 0.126 ], "step_params": [ 0.158, -0.624, 3.792, 2.212, 0.938, 59.098 ], "heli_params": [ -0.688, -0.029, 3.786, 0.950, -2.241, 59.142 ], "bp2_params": [ 0.081, -0.243, -0.950, 1.615, -3.086, 1.203 ], "groove_widths": [ 16.821, 14.922, 18.688, 18.560 ], "simple_Rise": 3.792, "simple_Twist": 15.063, "simple_hRise": 3.730, "simple_hTwist": 15.252 }, { "index": 23, "nt1": "///2/1801", "nt2": "///2/1733", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.081, -0.243, -0.950, 1.615, -3.086, 1.203 ], "step_params": [ -0.192, -1.976, 3.582, -0.281, 0.444, 27.565 ], "heli_params": [ -4.264, 0.327, 3.552, 0.931, 0.591, 27.570 ], "bp2_params": [ 0.182, -0.237, -0.964, 4.382, -4.255, 1.598 ], "groove_widths": [ 16.849, 14.831, 16.601, 15.551 ], "simple_Rise": 3.582, "simple_Twist": 26.892, "simple_hRise": 3.551, "simple_hTwist": 26.897 }, { "index": 24, "nt1": "///2/1802", "nt2": "///2/1732", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.182, -0.237, -0.964, 4.382, -4.255, 1.598 ], "step_params": [ 0.026, -1.814, 3.371, -7.845, 17.077, 31.182 ], "heli_params": [ -5.066, -1.031, 2.071, 28.734, 13.200, 36.286 ], "bp2_params": [ -0.003, -0.114, -0.014, -2.461, 12.446, 4.212 ], "groove_widths": [ 19.467, 16.008, 14.696, 10.234 ], "simple_Rise": 3.371, "simple_Twist": 32.228, "simple_hRise": 2.118, "simple_hTwist": 37.181 }, { "index": 25, "nt1": "///2/1803", "nt2": "///2/1731", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.003, -0.114, -0.014, -2.461, 12.446, 4.212 ], "step_params": [ 0.045, -1.254, 3.645, 7.296, 20.809, 48.362 ], "heli_params": [ -2.823, 0.446, 2.896, 24.006, -8.417, 52.876 ], "bp2_params": [ 2.912, -1.344, 0.006, -16.174, -17.824, -2.377 ], "groove_widths": [ 21.661, 16.647, 13.238, 8.996 ], "simple_Rise": 3.645, "simple_Twist": 30.434, "simple_hRise": 2.310, "simple_hTwist": 37.429 }, { "index": 26, "nt1": "///2/1804", "nt2": "///2/1730", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.912, -1.344, 0.006, -16.174, -17.824, -2.377 ], "step_params": [ -0.731, -2.123, 6.107, 22.857, 18.091, 36.624 ], "heli_params": [ -5.292, 4.215, 3.717, 24.582, -31.059, 46.495 ], "bp2_params": [ 0.040, -0.471, 1.378, -36.192, -1.669, 9.245 ], "groove_widths": [ 21.335, 16.117, 13.632, 12.625 ], "simple_Rise": 6.107, "simple_Twist": 53.976, "simple_hRise": 4.637, "simple_hTwist": 60.820 }, { "index": 27, "nt1": "///2/1806", "nt2": "///2/1729", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.040, -0.471, 1.378, -36.192, -1.669, 9.245 ], "step_params": [ 0.832, -0.374, 5.187, -11.078, 5.916, 40.330 ], "heli_params": [ -1.465, -2.926, 4.711, 8.340, 15.615, 42.162 ], "bp2_params": [ 0.117, -0.470, -1.353, -8.466, 4.666, -3.567 ], "groove_widths": [ 21.192, 15.907, 17.829, 17.788 ], "simple_Rise": 5.187, "simple_Twist": 40.413, "simple_hRise": 4.713, "simple_hTwist": 42.241 }, { "index": 28, "nt1": "///2/1807", "nt2": "///2/1727", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.117, -0.470, -1.353, -8.466, 4.666, -3.567 ], "step_params": [ 1.644, -1.209, 3.210, 1.060, 3.036, 39.016 ], "heli_params": [ -2.159, -2.331, 3.153, 4.536, -1.584, 39.143 ], "bp2_params": [ 2.896, -0.502, -0.549, 1.207, 1.629, 5.232 ], "groove_widths": [ 21.858, 16.408, 16.625, 14.096 ], "simple_Rise": 3.210, "simple_Twist": 23.319, "simple_hRise": 3.100, "simple_hTwist": 23.536 }, { "index": 29, "nt1": "///2/1808", "nt2": "///2/1726", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.896, -0.502, -0.549, 1.207, 1.629, 5.232 ], "step_params": [ -1.065, -1.583, 2.804, -3.460, 47.986, 26.187 ], "heli_params": [ -3.562, 1.033, 0.085, 62.929, 4.538, 54.401 ], "bp2_params": [ -0.040, -0.162, 0.580, -4.316, 5.281, 2.921 ], "groove_widths": [ 21.019, 16.656, 15.739, 12.385 ], "simple_Rise": 2.804, "simple_Twist": 42.353, "simple_hRise": 0.843, "simple_hTwist": 63.252 }, { "index": 30, "nt1": "///2/1809", "nt2": "///2/1725", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.040, -0.162, 0.580, -4.316, 5.281, 2.921 ], "step_params": [ -0.796, -1.891, 3.497, 0.501, 3.478, 27.803 ], "heli_params": [ -4.754, 1.766, 3.227, 7.201, -1.037, 28.020 ], "bp2_params": [ -0.094, -0.094, -0.152, -0.030, 7.058, -0.354 ], "groove_widths": [ 19.046, 16.023, 15.554, 12.848 ], "simple_Rise": 3.497, "simple_Twist": 28.008, "simple_hRise": 3.229, "simple_hTwist": 28.224 }, { "index": 31, "nt1": "///2/1810", "nt2": "///2/1724", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.094, -0.094, -0.152, -0.030, 7.058, -0.354 ], "step_params": [ -1.572, -1.433, 3.309, 0.314, 5.431, 37.232 ], "heli_params": [ -2.915, 2.479, 3.064, 8.451, -0.488, 37.613 ], "bp2_params": [ 0.096, -0.301, -0.970, 4.807, 7.171, -3.482 ], "groove_widths": [ 18.103, 15.153, 18.384, 18.344 ], "simple_Rise": 3.309, "simple_Twist": 36.353, "simple_hRise": 3.057, "simple_hTwist": 36.744 }, { "index": 32, "nt1": "///2/1811", "nt2": "///2/1723", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.096, -0.301, -0.970, 4.807, 7.171, -3.482 ], "step_params": [ -0.307, -1.177, 3.957, 1.847, 2.314, 28.841 ], "heli_params": [ -2.960, 1.099, 3.826, 4.631, -3.695, 28.990 ], "bp2_params": [ 0.263, -1.381, -1.650, 6.139, 3.774, -9.020 ], "groove_widths": [ 19.892, 15.237, 21.354, 20.938 ], "simple_Rise": 3.957, "simple_Twist": 27.962, "simple_hRise": 3.821, "simple_hTwist": 28.115 }, { "index": 33, "nt1": "///2/1812", "nt2": "///2/1722", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.263, -1.381, -1.650, 6.139, 3.774, -9.020 ], "step_params": [ -1.777, -3.639, 4.270, -31.089, 26.568, 16.278 ], "heli_params": [ -7.757, -1.002, 0.680, 44.962, 52.612, 43.886 ], "bp2_params": [ -0.000, -0.124, 0.338, -1.980, 0.542, 4.137 ], "groove_widths": [ 22.597, 17.048, 15.163, 13.437 ], "simple_Rise": 4.270, "simple_Twist": 17.673, "simple_hRise": 0.811, "simple_hTwist": 44.400 }, { "index": 34, "nt1": "///2/1813", "nt2": "///2/1720", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.000, -0.124, 0.338, -1.980, 0.542, 4.137 ], "step_params": [ -1.128, -2.907, 7.160, -7.244, 7.674, 29.749 ], "heli_params": [ -8.387, -0.790, 6.328, 14.388, 13.584, 31.525 ], "bp2_params": [ -6.816, -4.679, -0.313, -6.927, -2.494, -21.769 ], "groove_widths": [ 24.002, 18.904, 12.880, 10.425 ], "simple_Rise": 7.160, "simple_Twist": 74.843, "simple_hRise": 6.950, "simple_hTwist": 75.475 }, { "index": 35, "nt1": "///2/1815", "nt2": "///2/1718", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.816, -4.679, -0.313, -6.927, -2.494, -21.769 ], "step_params": [ 1.427, -1.318, 3.240, -1.487, 0.654, 60.811 ], "heli_params": [ -1.332, -1.480, 3.194, 0.646, 1.469, 60.831 ], "bp2_params": [ -0.192, -0.122, 0.113, -4.388, 3.283, 1.113 ], "groove_widths": [ 22.673, 16.370, 11.789, 10.587 ], "simple_Rise": 3.240, "simple_Twist": 16.933, "simple_hRise": 3.051, "simple_hTwist": 17.010 }, { "index": 36, "nt1": "///2/1816", "nt2": "///2/1717", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.192, -0.122, 0.113, -4.388, 3.283, 1.113 ], "step_params": [ -0.516, -1.236, 3.587, 4.559, 13.237, 35.790 ], "heli_params": [ -3.581, 1.371, 2.884, 20.594, -7.092, 38.347 ], "bp2_params": [ 0.060, -0.474, -0.714, -12.251, -17.851, -3.443 ], "groove_widths": [ 20.875, 14.674, 14.912, 13.191 ], "simple_Rise": 3.587, "simple_Twist": 33.838, "simple_hRise": 2.832, "simple_hTwist": 36.541 }, { "index": 37, "nt1": "///2/1817", "nt2": "///2/1716", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.060, -0.474, -0.714, -12.251, -17.851, -3.443 ], "step_params": [ 0.437, -1.089, 3.833, 1.016, 0.661, 37.670 ], "heli_params": [ -1.785, -0.522, 3.825, 1.024, -1.573, 37.689 ], "bp2_params": [ 1.584, 1.773, -0.223, -16.821, -7.018, 1.843 ], "groove_widths": [ 20.857, 16.270, 14.717, 14.324 ], "simple_Rise": 3.833, "simple_Twist": 30.916, "simple_hRise": 3.822, "simple_hTwist": 30.940 }, { "index": 38, "nt1": "///2/1818", "nt2": "///2/1715", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.584, 1.773, -0.223, -16.821, -7.018, 1.843 ], "step_params": [ -0.271, -1.709, 7.385, 9.740, 14.914, 47.089 ], "heli_params": [ -4.367, 1.855, 6.430, 17.934, -11.712, 50.165 ], "bp2_params": [ -0.272, -0.201, -0.923, -12.588, -12.791, 5.127 ], "groove_widths": [ 20.836, 16.536, 15.850, 15.177 ], "simple_Rise": 7.385, "simple_Twist": 55.903, "simple_hRise": 6.647, "simple_hTwist": 58.453 }, { "index": 39, "nt1": "///2/1820", "nt2": "///2/1713", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.272, -0.201, -0.923, -12.588, -12.791, 5.127 ], "step_params": [ -0.167, -1.017, 3.104, -4.170, 0.487, 31.010 ], "heli_params": [ -1.973, -0.439, 3.084, 0.905, 7.756, 31.286 ], "bp2_params": [ -0.035, -0.085, -0.249, -2.246, -8.350, 1.501 ], "groove_widths": [ 21.262, 16.370, 15.916, 15.512 ], "simple_Rise": 3.104, "simple_Twist": 30.102, "simple_hRise": 3.083, "simple_hTwist": 30.387 }, { "index": 40, "nt1": "///2/1821", "nt2": "///2/1712", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.035, -0.085, -0.249, -2.246, -8.350, 1.501 ], "step_params": [ -0.240, -0.764, 3.051, 5.888, 19.997, 31.136 ], "heli_params": [ -3.491, 1.051, 2.122, 33.024, -9.724, 37.326 ], "bp2_params": [ 0.169, -0.129, -0.730, 9.665, 8.384, -5.386 ], "groove_widths": [ 22.573, 17.040, 15.786, 10.755 ], "simple_Rise": 3.051, "simple_Twist": 29.869, "simple_hRise": 2.075, "simple_hTwist": 36.288 }, { "index": 41, "nt1": "///2/1822", "nt2": "///2/1711", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.169, -0.129, -0.730, 9.665, 8.384, -5.386 ], "step_params": [ 0.527, -2.889, 3.347, 6.839, -2.131, 152.914 ], "heli_params": [ -1.478, -0.246, 3.367, -1.096, -3.517, 152.968 ], "bp2_params": [ -0.362, -2.878, -0.088, 19.858, -14.708, 100.182 ], "groove_widths": [ 23.439, 16.360, 13.260, 7.484 ], "simple_Rise": 3.347, "simple_Twist": 26.534, "simple_hRise": 3.584, "simple_hTwist": 27.467 }, { "index": 42, "nt1": "///2/1823", "nt2": "///2/1710", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ -0.362, -2.878, -0.088, 19.858, -14.708, 100.182 ], "step_params": [ -5.372, -1.279, 6.314, 51.409, 8.930, -56.808 ], "heli_params": [ 0.315, -0.187, 8.376, -7.843, 45.154, -75.631 ], "bp2_params": [ -0.179, -0.185, -0.537, -6.120, 2.572, -0.958 ], "groove_widths": [ 22.668, 14.680, 13.900, 10.253 ], "simple_Rise": 6.314, "simple_Twist": 71.516, "simple_hRise": 2.516, "simple_hTwist": 86.427 }, { "index": 43, "nt1": "///2/1826", "nt2": "///2/1708", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.185, -0.537, -6.120, 2.572, -0.958 ], "step_params": [ -1.564, -1.894, 3.167, 2.396, 1.915, 38.825 ], "heli_params": [ -3.060, 2.619, 2.975, 2.875, -3.597, 38.942 ], "bp2_params": [ 0.984, -0.756, -0.688, -0.623, 6.342, -19.056 ], "groove_widths": [ 21.591, 15.373, 13.415, 13.236 ], "simple_Rise": 3.167, "simple_Twist": 32.637, "simple_hRise": 2.935, "simple_hTwist": 32.777 }, { "index": 44, "nt1": "///2/1827", "nt2": "///2/1707", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.984, -0.756, -0.688, -0.623, 6.342, -19.056 ], "step_params": [ 0.846, -1.318, 3.767, 1.201, 1.977, 21.049 ], "heli_params": [ -4.525, -1.733, 3.671, 5.391, -3.274, 21.174 ], "bp2_params": [ -1.537, 0.553, 0.172, 3.572, 4.998, -16.694 ], "groove_widths": [ 20.533, 16.217, 15.078, 13.508 ], "simple_Rise": 3.767, "simple_Twist": 33.466, "simple_hRise": 3.713, "simple_hTwist": 33.543 }, { "index": 45, "nt1": "///2/1828", "nt2": "///2/1706", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.537, 0.553, 0.172, 3.572, 4.998, -16.694 ], "step_params": [ 1.240, -1.805, 3.182, 0.633, 15.915, 31.398 ], "heli_params": [ -5.023, -1.975, 2.078, 27.318, -1.086, 35.116 ], "bp2_params": [ 0.397, 0.338, -0.141, 14.179, 30.037, -7.233 ], "groove_widths": [ 18.736, 15.280, 18.097, 17.124 ], "simple_Rise": 3.182, "simple_Twist": 21.295, "simple_hRise": 1.521, "simple_hTwist": 26.538 }, { "index": 46, "nt1": "///2/1829", "nt2": "///2/1705", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.397, 0.338, -0.141, 14.179, 30.037, -7.233 ], "step_params": [ 0.983, -3.682, 3.615, -0.714, 5.573, 26.013 ], "heli_params": [ -9.443, -2.321, 2.752, 12.200, 1.564, 26.603 ], "bp2_params": [ -6.342, -1.204, 0.091, -0.205, -11.712, 36.498 ], "groove_widths": [ 16.883, 11.702, 18.879, 17.481 ], "simple_Rise": 3.615, "simple_Twist": 69.000, "simple_hRise": 3.337, "simple_hTwist": 69.201 }, { "index": 47, "nt1": "///2/1831", "nt2": "///2/1704", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "bp1_params": [ -6.342, -1.204, 0.091, -0.205, -11.712, 36.498 ], "step_params": [ -1.019, -1.032, 3.959, -1.949, 0.502, 44.646 ], "heli_params": [ -1.413, 1.124, 3.987, 0.660, 2.564, 44.689 ], "bp2_params": [ -2.667, 0.456, -0.825, -11.317, -7.105, 26.858 ], "groove_widths": [ 17.868, 13.490, 18.877, 17.814 ], "simple_Rise": 3.959, "simple_Twist": 19.663, "simple_hRise": 4.013, "simple_hTwist": 19.764 }, { "index": 48, "nt1": "///2/1832", "nt2": "///2/1703", "bp": "A-C", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.667, 0.456, -0.825, -11.317, -7.105, 26.858 ], "step_params": [ -1.756, -1.200, 3.368, -2.103, 1.959, 39.114 ], "heli_params": [ -2.030, 2.357, 3.392, 2.922, 3.136, 39.216 ], "bp2_params": [ 0.184, -0.234, -0.811, -4.142, 0.866, 0.544 ], "groove_widths": [ 18.791, null, 20.864, null ], "simple_Rise": 3.368, "simple_Twist": 23.063, "simple_hRise": 3.400, "simple_hTwist": 23.239 }, { "index": 49, "nt1": "///2/1833", "nt2": "///2/1702", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.184, -0.234, -0.811, -4.142, 0.866, 0.544 ], "step_params": [ -1.922, -1.523, 3.172, 1.988, -0.215, -55.354 ], "heli_params": [ 1.651, -1.954, 3.228, 0.231, 2.139, -55.388 ], "bp2_params": [ -0.435, 5.458, 1.313, -0.940, 1.966, -78.911 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.172, "simple_Twist": -17.078, "simple_hRise": 3.353, "simple_hTwist": -17.194 }, { "index": 50, "nt1": "///2/1836", "nt2": "///2/1700", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ -0.435, 5.458, 1.313, -0.940, 1.966, -78.911 ], "step_params": [ -0.289, 6.003, 3.725, -26.059, 30.639, -30.565 ], "heli_params": [ -8.089, -1.195, -1.409, -41.327, -35.149, -50.132 ], "bp2_params": [ -0.503, 2.333, 0.949, -22.640, 36.509, 53.337 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.725, "simple_Twist": -63.288, "simple_hRise": 0.934, "simple_hTwist": -73.851 }, { "index": 51, "nt1": "///2/1837", "nt2": "///2/1834", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 59, "num_stems": 1, "strand1": "UUCCGUAG", "strand2": "AAGGCGUC", "bp_type": "||||||||", "helix_form": ".AAAAAA", "helical_rise": 2.592, "helical_rise_std": 0.476, "helical_radius": 9.209, "helical_radius_std": 0.878, "helical_axis": [ 0.990, 0.109, -0.092 ], "point1": [ 180.154, 227.610, 178.486 ], "point2": [ 198.120, 229.592, 176.818 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///2/1839", "nt2": "///2/1860", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.168, 0.006, -1.336, -18.783, 2.076, -25.960 ], "step_params": [ 1.087, -0.569, 3.499, -5.173, 3.511, 33.964 ], "heli_params": [ -1.523, -2.662, 3.230, 5.947, 8.763, 34.518 ], "bp2_params": [ -0.102, -0.256, -0.923, -3.253, 4.972, -1.879 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.499, "simple_Twist": 28.519, "simple_hRise": 3.165, "simple_hTwist": 29.182 }, { "index": 2, "nt1": "///2/1840", "nt2": "///2/1859", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.102, -0.256, -0.923, -3.253, 4.972, -1.879 ], "step_params": [ 1.076, -2.101, 3.269, -1.377, 5.405, 36.091 ], "heli_params": [ -4.062, -1.898, 2.893, 8.660, 2.206, 36.505 ], "bp2_params": [ 0.227, -0.112, -0.051, -0.392, 4.796, 1.191 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.269, "simple_Twist": 34.539, "simple_hRise": 2.874, "simple_hTwist": 34.973 }, { "index": 3, "nt1": "///2/1841", "nt2": "///2/1858", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.227, -0.112, -0.051, -0.392, 4.796, 1.191 ], "step_params": [ 0.035, -2.244, 3.154, -0.004, 3.556, 28.395 ], "heli_params": [ -5.283, -0.071, 2.857, 7.214, 0.009, 28.613 ], "bp2_params": [ 0.204, -0.125, 0.392, 3.105, 2.921, 1.672 ], "groove_widths": [ 17.562, null, 16.601, null ], "simple_Rise": 3.154, "simple_Twist": 28.367, "simple_hRise": 2.857, "simple_hTwist": 28.584 }, { "index": 4, "nt1": "///2/1842", "nt2": "///2/1857", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.204, -0.125, 0.392, 3.105, 2.921, 1.672 ], "step_params": [ -0.319, -1.456, 3.088, 6.136, 30.083, 35.131 ], "heli_params": [ -3.886, 0.821, 1.413, 41.438, -8.452, 46.335 ], "bp2_params": [ -0.183, -0.146, -0.477, -6.173, -1.415, 0.013 ], "groove_widths": [ 18.502, 16.591, 15.614, 9.980 ], "simple_Rise": 3.088, "simple_Twist": 37.106, "simple_hRise": 1.501, "simple_hTwist": 47.814 }, { "index": 5, "nt1": "///2/1843", "nt2": "///2/1856", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.183, -0.146, -0.477, -6.173, -1.415, 0.013 ], "step_params": [ -0.232, -1.133, 3.489, -2.210, 3.977, 34.356 ], "heli_params": [ -2.544, 0.032, 3.349, 6.695, 3.721, 34.647 ], "bp2_params": [ 1.280, -0.369, 0.078, 1.067, -0.337, -7.595 ], "groove_widths": [ 18.918, null, 14.944, null ], "simple_Rise": 3.489, "simple_Twist": 26.628, "simple_hRise": 3.296, "simple_hTwist": 27.007 }, { "index": 6, "nt1": "///2/1844", "nt2": "///2/1855", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.280, -0.369, 0.078, 1.067, -0.337, -7.595 ], "step_params": [ 0.334, -1.980, 3.257, 2.773, 22.502, 28.964 ], "heli_params": [ -5.644, -0.224, 1.426, 38.427, -4.735, 36.632 ], "bp2_params": [ 0.075, -0.065, -0.406, -5.824, 7.106, -3.082 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.257, "simple_Twist": 35.240, "simple_hRise": 1.757, "simple_hTwist": 41.708 }, { "index": 7, "nt1": "///2/1845", "nt2": "///2/1854", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.075, -0.065, -0.406, -5.824, 7.106, -3.082 ], "step_params": [ -1.022, -1.425, 3.050, -2.299, 8.359, 31.057 ], "heli_params": [ -3.893, 1.478, 2.653, 15.243, 4.193, 32.216 ], "bp2_params": [ -0.190, -0.171, -0.453, 5.037, 14.741, -2.313 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.050, "simple_Twist": 32.435, "simple_hRise": 2.674, "simple_hTwist": 33.543 }, { "index": 8, "nt1": "///2/1846", "nt2": "///2/1853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 60, "num_stems": 7, "strand1": "CCUCCCGGGAGUGCCAUAGUGGUCUGCGGGGGC", "strand2": "GGAGGGCCCUCAUGGUAUCGUCAGACGCCCCCG", "bp_type": "||||||||||||||||||||.||||||||||||", "helix_form": "AAAA.AA.x.xx..Ax.A.....Ax.AAxA..", "helical_rise": 2.629, "helical_rise_std": 1.512, "helical_radius": 10.115, "helical_radius_std": 4.008, "helical_axis": [ 0.246, -0.739, -0.627 ], "point1": [ 102.005, 247.257, 185.926 ], "point2": [ 122.505, 185.570, 133.554 ], "num_pairs": 33, "pairs": [ { "index": 1, "nt1": "///z/125", "nt2": "///z/323", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.163, -0.170, -0.451, -7.231, 0.317, 0.317 ], "step_params": [ 0.048, -1.649, 3.213, -8.919, 3.855, 30.914 ], "heli_params": [ -3.607, -1.585, 2.867, 7.017, 16.236, 32.370 ], "bp2_params": [ 0.155, -0.213, 0.717, 0.775, -0.946, 0.815 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.213, "simple_Twist": 30.906, "simple_hRise": 2.867, "simple_hTwist": 32.361 }, { "index": 2, "nt1": "///z/126", "nt2": "///z/322", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.155, -0.213, 0.717, 0.775, -0.946, 0.815 ], "step_params": [ -0.059, -1.806, 3.231, 1.625, 1.134, 30.194 ], "heli_params": [ -3.684, 0.433, 3.155, 2.174, -3.115, 30.258 ], "bp2_params": [ -0.055, -0.129, 0.512, 1.860, 1.165, 2.003 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.231, "simple_Twist": 31.460, "simple_hRise": 3.159, "simple_hTwist": 31.521 }, { "index": 3, "nt1": "///z/127", "nt2": "///z/321", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.055, -0.129, 0.512, 1.860, 1.165, 2.003 ], "step_params": [ -0.041, -1.658, 3.415, 0.581, 0.384, 30.141 ], "heli_params": [ -3.269, 0.201, 3.393, 0.739, -1.118, 30.149 ], "bp2_params": [ 0.185, -0.147, 0.281, 3.907, 0.936, 1.883 ], "groove_widths": [ 17.713, null, 18.417, null ], "simple_Rise": 3.415, "simple_Twist": 28.747, "simple_hRise": 3.392, "simple_hTwist": 28.755 }, { "index": 4, "nt1": "///z/128", "nt2": "///z/320", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.147, 0.281, 3.907, 0.936, 1.883 ], "step_params": [ -0.447, -1.801, 3.317, -2.515, 12.342, 35.280 ], "heli_params": [ -4.322, 0.389, 2.589, 19.608, 3.995, 37.393 ], "bp2_params": [ 0.229, -0.183, 0.403, 1.860, 14.924, 2.034 ], "groove_widths": [ 18.444, 16.455, 17.488, 12.750 ], "simple_Rise": 3.317, "simple_Twist": 35.239, "simple_hRise": 2.588, "simple_hTwist": 37.355 }, { "index": 5, "nt1": "///z/129", "nt2": "///z/319", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.229, -0.183, 0.403, 1.860, 14.924, 2.034 ], "step_params": [ 0.139, -3.035, 3.013, 3.937, 20.527, 28.186 ], "heli_params": [ -7.020, 0.146, 0.712, 36.478, -6.997, 34.964 ], "bp2_params": [ 0.142, -0.120, 0.191, 2.151, -2.691, 0.296 ], "groove_widths": [ 18.360, 16.064, 17.383, 12.448 ], "simple_Rise": 3.013, "simple_Twist": 28.284, "simple_hRise": 0.719, "simple_hTwist": 35.042 }, { "index": 6, "nt1": "///z/130", "nt2": "///z/318", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.142, -0.120, 0.191, 2.151, -2.691, 0.296 ], "step_params": [ -0.738, -2.100, 3.454, 2.051, 8.437, 31.399 ], "heli_params": [ -5.172, 1.663, 2.759, 15.228, -3.701, 32.548 ], "bp2_params": [ -0.156, -0.214, -0.865, -7.124, 3.174, -0.165 ], "groove_widths": [ 17.469, 15.283, 17.881, 13.006 ], "simple_Rise": 3.454, "simple_Twist": 33.374, "simple_hRise": 2.806, "simple_hTwist": 34.454 }, { "index": 7, "nt1": "///z/131", "nt2": "///z/317", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.156, -0.214, -0.865, -7.124, 3.174, -0.165 ], "step_params": [ 0.038, -1.535, 3.132, -3.325, 9.160, 29.144 ], "heli_params": [ -4.500, -0.652, 2.525, 17.593, 6.386, 30.697 ], "bp2_params": [ -0.188, -0.217, -0.816, -1.576, -2.391, 1.617 ], "groove_widths": [ 17.120, 15.069, 17.569, 16.704 ], "simple_Rise": 3.132, "simple_Twist": 29.331, "simple_hRise": 2.530, "simple_hTwist": 30.873 }, { "index": 8, "nt1": "///z/132", "nt2": "///z/316", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.188, -0.217, -0.816, -1.576, -2.391, 1.617 ], "step_params": [ -1.239, -1.819, 3.511, -5.980, 9.125, 33.662 ], "heli_params": [ -4.393, 1.126, 3.097, 15.266, 10.006, 35.337 ], "bp2_params": [ -0.096, -0.253, -0.940, -7.962, 9.709, -4.522 ], "groove_widths": [ 17.779, 16.535, 18.182, 16.855 ], "simple_Rise": 3.511, "simple_Twist": 33.135, "simple_hRise": 3.088, "simple_hTwist": 34.837 }, { "index": 9, "nt1": "///z/133", "nt2": "///z/315", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.096, -0.253, -0.940, -7.962, 9.709, -4.522 ], "step_params": [ -0.606, -0.780, 3.668, 3.506, 22.225, 32.316 ], "heli_params": [ -3.961, 1.345, 2.560, 35.122, -5.540, 39.205 ], "bp2_params": [ 0.191, -0.601, -1.891, -12.917, -8.165, 0.616 ], "groove_widths": [ 16.908, 15.052, 13.061, 10.632 ], "simple_Rise": 3.668, "simple_Twist": 30.195, "simple_hRise": 2.466, "simple_hTwist": 37.499 }, { "index": 10, "nt1": "///z/134", "nt2": "///z/290", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.191, -0.601, -1.891, -12.917, -8.165, 0.616 ], "step_params": [ -0.190, 0.418, 4.486, -2.960, 1.025, 32.695 ], "heli_params": [ 0.497, -0.362, 4.496, 1.816, 5.242, 32.840 ], "bp2_params": [ -0.069, -0.522, -1.623, -9.335, -0.743, -3.208 ], "groove_widths": [ 17.482, 13.739, 14.606, 13.838 ], "simple_Rise": 4.486, "simple_Twist": 34.654, "simple_hRise": 4.497, "simple_hTwist": 34.791 }, { "index": 11, "nt1": "///z/135", "nt2": "///z/289", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.069, -0.522, -1.623, -9.335, -0.743, -3.208 ], "step_params": [ -0.783, -0.852, 3.716, -15.267, 0.561, 43.838 ], "heli_params": [ -1.139, -0.533, 3.764, 0.725, 19.749, 46.300 ], "bp2_params": [ -0.526, 0.863, 0.383, -23.643, 2.577, 9.591 ], "groove_widths": [ 18.197, 14.921, 15.530, 13.828 ], "simple_Rise": 3.716, "simple_Twist": 46.346, "simple_hRise": 3.772, "simple_hTwist": 48.667 }, { "index": 12, "nt1": "///z/297", "nt2": "///z/288", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.526, 0.863, 0.383, -23.643, 2.577, 9.591 ], "step_params": [ 2.177, -2.673, 3.985, 11.399, 28.918, -2.992 ], "heli_params": [ -4.525, 7.787, 2.067, -78.741, 31.038, -31.223 ], "bp2_params": [ -2.985, -1.605, -2.242, -19.571, -3.823, -6.268 ], "groove_widths": [ 18.188, 16.270, 15.693, 11.800 ], "simple_Rise": 3.985, "simple_Twist": 11.881, "simple_hRise": -0.131, "simple_hTwist": 33.224 }, { "index": 13, "nt1": "///z/137", "nt2": "///z/287", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.985, -1.605, -2.242, -19.571, -3.823, -6.268 ], "step_params": [ -0.087, -1.095, 3.495, -8.586, 2.450, 42.346 ], "heli_params": [ -1.742, -0.775, 3.383, 3.347, 11.729, 43.235 ], "bp2_params": [ 0.165, -0.367, -1.014, -12.815, 10.284, -5.422 ], "groove_widths": [ 18.454, 16.512, 22.601, 22.201 ], "simple_Rise": 3.495, "simple_Twist": 24.081, "simple_hRise": 3.209, "simple_hTwist": 25.660 }, { "index": 14, "nt1": "///z/138", "nt2": "///z/286", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.367, -1.014, -12.815, 10.284, -5.422 ], "step_params": [ 1.227, -1.689, 3.167, -5.868, 8.406, 35.383 ], "heli_params": [ -3.686, -2.649, 2.486, 13.484, 9.414, 36.792 ], "bp2_params": [ 0.247, -0.134, -0.055, -6.188, 18.127, 0.367 ], "groove_widths": [ 18.166, 15.627, 16.245, 16.152 ], "simple_Rise": 3.167, "simple_Twist": 34.895, "simple_hRise": 2.475, "simple_hTwist": 36.325 }, { "index": 15, "nt1": "///z/139", "nt2": "///z/285", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.247, -0.134, -0.055, -6.188, 18.127, 0.367 ], "step_params": [ -0.184, -1.557, 2.999, 2.376, 25.051, 36.087 ], "heli_params": [ -3.963, 0.424, 1.622, 35.616, -3.378, 43.753 ], "bp2_params": [ 0.030, -0.065, -0.192, -9.666, 2.599, -0.054 ], "groove_widths": [ 18.680, 15.967, 14.280, 10.163 ], "simple_Rise": 2.999, "simple_Twist": 36.651, "simple_hRise": 1.644, "simple_hTwist": 44.212 }, { "index": 16, "nt1": "///z/140", "nt2": "///z/284", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.030, -0.065, -0.192, -9.666, 2.599, -0.054 ], "step_params": [ 0.481, -1.619, 3.197, 0.672, 16.070, 47.598 ], "heli_params": [ -2.965, -0.525, 2.564, 19.280, -0.806, 50.092 ], "bp2_params": [ -0.090, -0.117, -0.357, -6.244, -6.806, -1.300 ], "groove_widths": [ 18.202, 15.229, 15.070, 10.156 ], "simple_Rise": 3.197, "simple_Twist": 48.455, "simple_hRise": 2.578, "simple_hTwist": 50.901 }, { "index": 17, "nt1": "///z/141", "nt2": "///z/252", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.090, -0.117, -0.357, -6.244, -6.806, -1.300 ], "step_params": [ -1.672, -1.694, 3.398, -14.957, 6.062, 18.965 ], "heli_params": [ -6.031, -1.284, 3.189, 15.292, 37.733, 24.854 ], "bp2_params": [ 0.026, -0.093, 0.217, 1.689, -1.554, -1.188 ], "groove_widths": [ 16.839, 13.914, 15.519, 11.653 ], "simple_Rise": 3.398, "simple_Twist": 18.108, "simple_hRise": 3.154, "simple_hTwist": 24.211 }, { "index": 18, "nt1": "///z/142", "nt2": "///z/251", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.026, -0.093, 0.217, 1.689, -1.554, -1.188 ], "step_params": [ -0.359, -2.042, 3.402, 1.286, 1.550, 36.631 ], "heli_params": [ -3.462, 0.751, 3.302, 2.463, -2.044, 36.685 ], "bp2_params": [ -0.194, -0.163, -0.452, -0.558, -2.197, 1.656 ], "groove_widths": [ 16.791, 15.053, 15.913, 12.780 ], "simple_Rise": 3.402, "simple_Twist": 38.204, "simple_hRise": 3.306, "simple_hTwist": 38.255 }, { "index": 19, "nt1": "///z/143", "nt2": "///z/250", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.194, -0.163, -0.452, -0.558, -2.197, 1.656 ], "step_params": [ 1.844, -1.512, 3.554, 0.401, 1.080, 30.283 ], "heli_params": [ -3.127, -3.440, 3.523, 2.066, -0.767, 30.304 ], "bp2_params": [ 3.309, -0.829, -0.006, 1.072, -1.824, -1.004 ], "groove_widths": [ 18.181, 16.652, 15.768, 13.860 ], "simple_Rise": 3.554, "simple_Twist": 10.863, "simple_hRise": 3.453, "simple_hTwist": 10.924 }, { "index": 20, "nt1": "///z/144", "nt2": "///z/249", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 3.309, -0.829, -0.006, 1.072, -1.824, -1.004 ], "step_params": [ -0.081, -1.526, 3.848, 17.509, 25.485, 23.834 ], "heli_params": [ -5.418, 2.269, 1.367, 43.893, -30.157, 38.862 ], "bp2_params": [ -0.492, -1.309, -1.727, -8.947, -1.885, -1.116 ], "groove_widths": [ 18.790, 16.487, 18.598, 17.172 ], "simple_Rise": 3.848, "simple_Twist": 44.941, "simple_hRise": 2.528, "simple_hTwist": 54.092 }, { "index": 21, "nt1": "///z/145", "nt2": "///z/248", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.492, -1.309, -1.727, -8.947, -1.885, -1.116 ], "step_params": [ -0.045, -0.888, 4.287, -2.569, 0.801, 26.621 ], "heli_params": [ -2.192, -0.774, 4.244, 1.733, 5.560, 26.754 ], "bp2_params": [ -0.080, -0.333, -1.240, -9.789, 4.423, -3.111 ], "groove_widths": [ 18.389, 16.059, 20.396, 20.176 ], "simple_Rise": 4.287, "simple_Twist": 24.248, "simple_hRise": 4.238, "simple_hTwist": 24.395 }, { "index": 22, "nt1": "///z/146", "nt2": "///z/247", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.080, -0.333, -1.240, -9.789, 4.423, -3.111 ], "step_params": [ -0.927, -1.508, 3.672, -4.198, 3.381, 29.336 ], "heli_params": [ -3.717, 0.824, 3.575, 6.606, 8.202, 29.817 ], "bp2_params": [ -0.226, -0.452, -1.336, -3.476, 12.937, -7.338 ], "groove_widths": [ 18.308, 16.234, 17.458, 17.375 ], "simple_Rise": 3.672, "simple_Twist": 30.133, "simple_hRise": 3.579, "simple_hTwist": 30.600 }, { "index": 23, "nt1": "///z/147", "nt2": "///z/246", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.226, -0.452, -1.336, -3.476, 12.937, -7.338 ], "step_params": [ 1.245, -1.424, 3.482, 3.146, 17.948, 36.108 ], "heli_params": [ -4.070, -1.455, 2.614, 26.949, -4.724, 40.308 ], "bp2_params": [ 0.195, -0.236, -0.755, -2.757, -1.897, 0.793 ], "groove_widths": [ 18.640, 16.210, 18.649, 18.648 ], "simple_Rise": 3.482, "simple_Twist": 33.871, "simple_hRise": 2.542, "simple_hTwist": 38.335 }, { "index": 24, "nt1": "///z/148", "nt2": "///z/245", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.195, -0.236, -0.755, -2.757, -1.897, 0.793 ], "step_params": [ 0.056, -1.125, 3.527, -1.503, 3.538, 26.147 ], "heli_params": [ -3.454, -0.545, 3.340, 7.767, 3.300, 26.424 ], "bp2_params": [ -0.015, -0.104, 0.060, 0.249, -0.245, 2.310 ], "groove_widths": [ 19.200, 15.724, 17.486, 17.259 ], "simple_Rise": 3.527, "simple_Twist": 27.267, "simple_hRise": 3.349, "simple_hTwist": 27.532 }, { "index": 25, "nt1": "///z/149", "nt2": "///z/244", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.015, -0.104, 0.060, 0.249, -0.245, 2.310 ], "step_params": [ -0.275, -2.053, 6.282, -25.650, 30.670, 37.971 ], "heli_params": [ -5.601, -2.513, 3.470, 36.971, 30.919, 54.598 ], "bp2_params": [ -0.132, -0.349, -1.189, -4.224, -1.397, -0.716 ], "groove_widths": [ 20.991, 16.876, 16.978, 15.322 ], "simple_Rise": 6.282, "simple_Twist": 38.617, "simple_hRise": 3.520, "simple_hTwist": 55.031 }, { "index": 26, "nt1": "///z/150", "nt2": "///z/242", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.132, -0.349, -1.189, -4.224, -1.397, -0.716 ], "step_params": [ -0.184, -1.543, 3.759, -0.692, 0.491, 31.025 ], "heli_params": [ -2.993, 0.191, 3.738, 0.918, 1.293, 31.036 ], "bp2_params": [ 0.144, -0.298, -1.004, -1.265, 0.293, -0.139 ], "groove_widths": [ 21.489, 16.921, 15.998, 12.626 ], "simple_Rise": 3.759, "simple_Twist": 29.366, "simple_hRise": 3.737, "simple_hTwist": 29.378 }, { "index": 27, "nt1": "///z/151", "nt2": "///z/241", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.144, -0.298, -1.004, -1.265, 0.293, -0.139 ], "step_params": [ 0.448, -1.456, 3.293, -8.536, 11.357, 26.866 ], "heli_params": [ -4.851, -2.411, 2.265, 22.551, 16.949, 30.330 ], "bp2_params": [ -0.202, -0.147, 0.434, 0.345, 5.808, 2.689 ], "groove_widths": [ 19.986, 15.635, 16.300, 10.298 ], "simple_Rise": 3.293, "simple_Twist": 28.943, "simple_hRise": 2.350, "simple_hTwist": 32.175 }, { "index": 28, "nt1": "///z/152", "nt2": "///z/240", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.202, -0.147, 0.434, 0.345, 5.808, 2.689 ], "step_params": [ -0.127, -1.940, 3.612, 1.282, 3.721, 30.597 ], "heli_params": [ -4.422, 0.505, 3.350, 7.016, -2.417, 30.843 ], "bp2_params": [ -0.154, -0.245, 0.971, 6.919, 4.240, 0.610 ], "groove_widths": [ 18.684, 15.568, 15.835, 12.763 ], "simple_Rise": 3.612, "simple_Twist": 30.264, "simple_hRise": 3.347, "simple_hTwist": 30.513 }, { "index": 29, "nt1": "///z/153", "nt2": "///z/239", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.245, 0.971, 6.919, 4.240, 0.610 ], "step_params": [ -0.950, -2.553, 3.377, 17.142, 25.216, 49.308 ], "heli_params": [ -3.798, 1.765, 1.615, 27.423, -18.642, 57.468 ], "bp2_params": [ -0.108, -0.351, -1.385, -10.811, -0.777, 0.011 ], "groove_widths": [ 17.786, 15.136, 17.844, 15.134 ], "simple_Rise": 3.377, "simple_Twist": 49.178, "simple_hRise": 1.610, "simple_hTwist": 57.359 }, { "index": 30, "nt1": "///z/229", "nt2": "///z/238", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.108, -0.351, -1.385, -10.811, -0.777, 0.011 ], "step_params": [ -0.014, -1.525, 3.374, -6.421, 5.792, 23.075 ], "heli_params": [ -5.314, -1.892, 2.814, 13.871, 15.376, 24.622 ], "bp2_params": [ -0.164, -0.176, -0.539, -2.560, -3.696, -0.884 ], "groove_widths": [ 17.424, null, 16.709, null ], "simple_Rise": 3.374, "simple_Twist": 23.132, "simple_hRise": 2.816, "simple_hTwist": 24.675 }, { "index": 31, "nt1": "///z/230", "nt2": "///z/237", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, -0.176, -0.539, -2.560, -3.696, -0.884 ], "step_params": [ -0.262, -1.598, 3.646, 4.647, 7.160, 39.417 ], "heli_params": [ -3.185, 0.942, 3.268, 10.466, -6.793, 40.294 ], "bp2_params": [ -0.126, -0.274, -1.053, -6.424, 4.447, -2.120 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.646, "simple_Twist": 39.329, "simple_hRise": 3.267, "simple_hTwist": 40.209 }, { "index": 32, "nt1": "///z/231", "nt2": "///z/236", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.126, -0.274, -1.053, -6.424, 4.447, -2.120 ], "step_params": [ 0.909, 0.252, 4.354, -2.907, 4.882, 17.897 ], "heli_params": [ -2.641, -4.820, 4.078, 15.204, 9.052, 18.770 ], "bp2_params": [ 0.230, -0.155, 0.409, 2.609, 5.858, 4.896 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.354, "simple_Twist": 15.659, "simple_hRise": 4.012, "simple_hTwist": 16.652 }, { "index": 33, "nt1": "///z/232", "nt2": "///z/235", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 61, "num_stems": 1, "strand1": "ACCGGUG", "strand2": "UGGCCAC", "bp_type": ".||||||", "helix_form": "x.A.A.", "helical_rise": 3.233, "helical_rise_std": 0.598, "helical_radius": 10.084, "helical_radius_std": 1.510, "helical_axis": [ 0.549, 0.836, 0.003 ], "point1": [ 117.925, 177.800, 117.530 ], "point2": [ 128.794, 194.343, 117.594 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///z/155", "nt2": "///z/228", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.391, -2.898, -1.136, -6.352, 13.937, 69.197 ], "step_params": [ 1.451, -4.102, 2.132, 0.094, 14.130, 64.556 ], "heli_params": [ -4.075, -1.331, 1.311, 13.065, -0.087, 65.921 ], "bp2_params": [ 0.214, -0.236, 0.731, 4.522, 2.585, 2.142 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.132, "simple_Twist": -72.008, "simple_hRise": 2.785, "simple_hTwist": -73.197 }, { "index": 2, "nt1": "///z/156", "nt2": "///z/171", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.214, -0.236, 0.731, 4.522, 2.585, 2.142 ], "step_params": [ -0.601, -2.060, 3.254, 0.989, -1.998, 37.185 ], "heli_params": [ -2.958, 1.074, 3.340, -3.130, -1.549, 37.249 ], "bp2_params": [ 0.140, -0.227, 0.673, -0.215, -5.436, -0.690 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.254, "simple_Twist": 37.421, "simple_hRise": 3.339, "simple_hTwist": 37.485 }, { "index": 3, "nt1": "///z/157", "nt2": "///z/170", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.140, -0.227, 0.673, -0.215, -5.436, -0.690 ], "step_params": [ 0.165, -1.681, 2.982, 3.698, 0.753, 29.572 ], "heli_params": [ -3.411, 0.381, 2.938, 1.467, -7.207, 29.807 ], "bp2_params": [ -0.168, -0.150, 0.108, 0.920, -4.968, -0.583 ], "groove_widths": [ 17.812, null, 21.459, null ], "simple_Rise": 2.982, "simple_Twist": 31.364, "simple_hRise": 2.942, "simple_hTwist": 31.584 }, { "index": 4, "nt1": "///z/158", "nt2": "///z/169", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.168, -0.150, 0.108, 0.920, -4.968, -0.583 ], "step_params": [ -1.316, -2.646, 3.463, -0.812, 2.635, 26.735 ], "heli_params": [ -6.388, 2.617, 3.230, 5.680, 1.751, 26.874 ], "bp2_params": [ -0.162, -0.179, -0.640, -2.314, -3.801, 0.859 ], "groove_widths": [ 16.043, null, 22.916, null ], "simple_Rise": 3.463, "simple_Twist": 26.836, "simple_hRise": 3.231, "simple_hTwist": 26.975 }, { "index": 5, "nt1": "///z/159", "nt2": "///z/168", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.162, -0.179, -0.640, -2.314, -3.801, 0.859 ], "step_params": [ 0.087, -1.995, 3.208, -1.902, 6.980, 29.613 ], "heli_params": [ -5.066, -0.512, 2.668, 13.406, 3.653, 30.465 ], "bp2_params": [ -0.022, -0.113, -0.342, 4.771, 3.024, 0.407 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.208, "simple_Twist": 28.657, "simple_hRise": 2.647, "simple_hTwist": 29.538 }, { "index": 6, "nt1": "///z/160", "nt2": "///z/167", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.022, -0.113, -0.342, 4.771, 3.024, 0.407 ], "step_params": [ -0.425, -1.404, 3.496, -4.168, 33.571, 36.097 ], "heli_params": [ -4.065, 0.217, 1.715, 44.126, 5.479, 49.082 ], "bp2_params": [ -0.202, -0.192, -0.776, -5.110, -5.967, 1.374 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.496, "simple_Twist": 36.997, "simple_hRise": 1.758, "simple_hTwist": 49.728 }, { "index": 7, "nt1": "///z/161", "nt2": "///z/166", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 62, "num_stems": 1, "strand1": "AAU", "strand2": "UUA", "bp_type": "|||", "helix_form": "..", "helical_rise": 3.598, "helical_rise_std": 0.392, "helical_radius": 8.745, "helical_radius_std": 0.444, "helical_axis": [ -0.253, -0.967, 0.026 ], "point1": [ 117.173, 176.655, 111.455 ], "point2": [ 115.383, 169.800, 111.636 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///z/172", "nt2": "///z/227", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.049, -0.127, -0.528, -4.233, -1.718, 1.027 ], "step_params": [ -1.547, -1.425, 3.856, -2.550, 1.179, 29.293 ], "heli_params": [ -3.105, 2.395, 3.914, 2.325, 5.028, 29.425 ], "bp2_params": [ 0.227, -0.404, -1.430, -4.266, 1.330, -5.741 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.856, "simple_Twist": 28.277, "simple_hRise": 3.916, "simple_hTwist": 28.413 }, { "index": 2, "nt1": "///z/173", "nt2": "///z/226", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.227, -0.404, -1.430, -4.266, 1.330, -5.741 ], "step_params": [ -0.010, -0.418, 4.173, -2.147, 1.688, 26.063 ], "heli_params": [ -1.503, -0.717, 4.126, 3.730, 4.744, 26.204 ], "bp2_params": [ -0.120, -0.272, -0.969, 1.103, 2.067, -1.670 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.173, "simple_Twist": 28.109, "simple_hRise": 4.131, "simple_hTwist": 28.238 }, { "index": 3, "nt1": "///z/174", "nt2": "///z/225", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 63, "num_stems": 1, "strand1": "UAGU", "strand2": "AGCG", "bp_type": "..||", "helix_form": "...", "helical_rise": 4.067, "helical_rise_std": 0.926, "helical_radius": 7.952, "helical_radius_std": 3.081, "helical_axis": [ 0.988, 0.126, 0.089 ], "point1": [ 111.479, 231.882, 142.217 ], "point2": [ 123.674, 233.436, 143.311 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///z/259", "nt2": "///z/274", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 1.445, 2.172, -1.383, -1.493, -6.211, -108.490 ], "step_params": [ 2.046, 1.070, 3.093, -15.180, -67.382, -3.017 ], "heli_params": [ 2.938, 0.929, 1.636, 85.663, -19.298, -69.129 ], "bp2_params": [ -6.224, -2.819, 1.475, 2.498, 4.647, -25.144 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.093, "simple_Twist": 39.712, "simple_hRise": 0.402, "simple_hTwist": 78.426 }, { "index": 2, "nt1": "///z/260", "nt2": "///z/273", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.224, -2.819, 1.475, 2.498, 4.647, -25.144 ], "step_params": [ 2.053, -1.120, 3.550, -0.309, 28.392, 56.177 ], "heli_params": [ -2.410, -1.995, 2.749, 28.248, 0.307, 62.419 ], "bp2_params": [ -0.184, -0.262, -0.888, 0.771, -2.463, 1.682 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.550, "simple_Twist": 21.986, "simple_hRise": 1.309, "simple_hTwist": 35.772 }, { "index": 3, "nt1": "///z/261", "nt2": "///z/272", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.262, -0.888, 0.771, -2.463, 1.682 ], "step_params": [ -0.987, -1.637, 3.452, 0.160, 0.705, 49.463 ], "heli_params": [ -2.011, 1.192, 3.427, 0.842, -0.191, 49.468 ], "bp2_params": [ 3.143, -1.283, -1.189, -0.346, -1.690, -16.966 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.452, "simple_Twist": 31.519, "simple_hRise": 3.411, "simple_hTwist": 31.527 }, { "index": 4, "nt1": "///z/262", "nt2": "///z/271", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 64, "num_stems": 1, "strand1": "AGGCC", "strand2": "GCCGG", "bp_type": ".||||", "helix_form": ".AAx", "helical_rise": 3.431, "helical_rise_std": 0.361, "helical_radius": 8.712, "helical_radius_std": 1.220, "helical_axis": [ -0.910, 0.004, 0.413 ], "point1": [ 105.424, 231.288, 145.373 ], "point2": [ 92.847, 231.346, 151.085 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///z/276", "nt2": "///z/256", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -5.992, -2.579, -1.377, -11.770, -15.590, -34.312 ], "step_params": [ 1.484, -0.738, 4.286, -4.959, -0.959, 50.938 ], "heli_params": [ -0.769, -2.161, 4.146, -1.112, 5.750, 51.172 ], "bp2_params": [ -0.162, -0.114, -0.521, -12.368, -1.395, 0.820 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.286, "simple_Twist": 18.927, "simple_hRise": 3.807, "simple_hTwist": 19.583 }, { "index": 2, "nt1": "///z/277", "nt2": "///z/255", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.162, -0.114, -0.521, -12.368, -1.395, 0.820 ], "step_params": [ 0.018, -1.706, 2.962, -4.649, 2.950, 29.504 ], "heli_params": [ -3.831, -0.878, 2.747, 5.730, 9.030, 30.002 ], "bp2_params": [ -0.166, -0.123, 0.154, -7.831, 2.806, 0.605 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.962, "simple_Twist": 29.613, "simple_hRise": 2.748, "simple_hTwist": 30.109 }, { "index": 3, "nt1": "///z/278", "nt2": "///z/254", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.166, -0.123, 0.154, -7.831, 2.806, 0.605 ], "step_params": [ -0.442, -1.301, 3.067, -1.055, 4.759, 38.935 ], "heli_params": [ -2.458, 0.542, 2.905, 7.106, 1.575, 39.227 ], "bp2_params": [ 0.172, -0.176, 0.322, -0.870, 4.828, -2.338 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.067, "simple_Twist": 37.190, "simple_hRise": 2.896, "simple_hTwist": 37.496 }, { "index": 4, "nt1": "///z/279", "nt2": "///z/253", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.172, -0.176, 0.322, -0.870, 4.828, -2.338 ], "step_params": [ 0.496, -2.029, 3.052, 1.304, 5.803, 22.642 ], "heli_params": [ -6.700, -0.842, 2.485, 14.462, -3.249, 23.400 ], "bp2_params": [ 0.157, -0.168, 0.450, 3.499, -0.710, 0.391 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.052, "simple_Twist": 22.265, "simple_hRise": 2.474, "simple_hTwist": 23.036 }, { "index": 5, "nt1": "///z/280", "nt2": "///z/283", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 65, "num_stems": 3, "strand1": "AGGGUGCUCUCGU", "strand2": "GUCCGCGUGAGCG", "bp_type": ".|||.||.||||.", "helix_form": "....xA.x.AA.", "helical_rise": 3.189, "helical_rise_std": 0.739, "helical_radius": 9.595, "helical_radius_std": 3.370, "helical_axis": [ 0.480, 0.045, 0.876 ], "point1": [ 117.705, 231.981, 165.773 ], "point2": [ 136.062, 233.711, 199.272 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///z/298", "nt2": "///z/295", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ -3.933, 3.673, -0.413, 20.848, 7.266, 79.102 ], "step_params": [ 3.907, 2.439, 3.943, 5.635, -3.914, 102.540 ], "heli_params": [ 1.632, -2.401, 4.026, -2.507, -3.609, 102.705 ], "bp2_params": [ -1.891, -0.214, -1.042, 0.371, -5.094, -10.866 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.943, "simple_Twist": 24.943, "simple_hRise": 4.281, "simple_hTwist": 25.855 }, { "index": 2, "nt1": "///z/299", "nt2": "///z/294", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.891, -0.214, -1.042, 0.371, -5.094, -10.866 ], "step_params": [ 0.318, -1.418, 3.604, -1.544, 3.319, 39.291 ], "heli_params": [ -2.524, -0.668, 3.464, 4.923, 2.290, 39.455 ], "bp2_params": [ 0.257, 0.398, -0.652, -2.209, -2.904, -6.461 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.604, "simple_Twist": 28.386, "simple_hRise": 3.398, "simple_hTwist": 28.616 }, { "index": 3, "nt1": "///z/300", "nt2": "///z/293", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.257, 0.398, -0.652, -2.209, -2.904, -6.461 ], "step_params": [ 0.976, -2.234, 3.496, -0.001, 2.143, 30.607 ], "heli_params": [ -4.664, -1.844, 3.336, 4.053, 0.002, 30.680 ], "bp2_params": [ 0.766, -0.351, 0.396, -2.941, -6.356, -2.709 ], "groove_widths": [ 17.247, null, 13.054, null ], "simple_Rise": 3.496, "simple_Twist": 27.829, "simple_hRise": 3.318, "simple_hTwist": 27.910 }, { "index": 4, "nt1": "///z/301", "nt2": "///z/292", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.766, -0.351, 0.396, -2.941, -6.356, -2.709 ], "step_params": [ 1.937, -1.296, 3.133, 5.154, 5.975, 50.871 ], "heli_params": [ -1.887, -1.892, 3.141, 6.908, -5.959, 51.439 ], "bp2_params": [ 3.666, -0.678, 0.393, -3.526, 4.542, 14.805 ], "groove_widths": [ 16.997, 15.505, 22.987, 22.692 ], "simple_Rise": 3.133, "simple_Twist": 33.880, "simple_hRise": 3.118, "simple_hTwist": 34.761 }, { "index": 5, "nt1": "///z/302", "nt2": "///z/291", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 3.666, -0.678, 0.393, -3.526, 4.542, 14.805 ], "step_params": [ -2.508, -4.838, 3.743, 13.112, -12.162, -18.642 ], "heli_params": [ 14.162, -2.045, 1.720, 30.039, 32.386, -25.779 ], "bp2_params": [ -0.165, -0.171, -0.653, -4.220, 2.197, -0.019 ], "groove_widths": [ 16.391, 15.393, 25.377, 25.065 ], "simple_Rise": 3.743, "simple_Twist": 3.338, "simple_hRise": 2.116, "simple_hTwist": 18.191 }, { "index": 6, "nt1": "///z/303", "nt2": "///z/314", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.171, -0.653, -4.220, 2.197, -0.019 ], "step_params": [ 0.073, -1.671, 3.309, -2.148, 9.148, 31.575 ], "heli_params": [ -4.420, -0.473, 2.721, 16.363, 3.841, 32.910 ], "bp2_params": [ 0.161, -0.198, -0.774, 1.362, -0.369, 1.155 ], "groove_widths": [ 19.646, 17.025, 22.624, 22.160 ], "simple_Rise": 3.309, "simple_Twist": 29.550, "simple_hRise": 2.672, "simple_hTwist": 30.977 }, { "index": 7, "nt1": "///z/304", "nt2": "///z/313", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.198, -0.774, 1.362, -0.369, 1.155 ], "step_params": [ -1.092, -1.478, 2.989, 3.219, 18.483, 37.941 ], "heli_params": [ -3.590, 1.785, 1.997, 26.539, -4.622, 42.173 ], "bp2_params": [ 3.289, -1.852, 0.031, 20.948, 23.634, -16.032 ], "groove_widths": [ 20.480, 15.976, 16.218, 16.156 ], "simple_Rise": 2.989, "simple_Twist": 18.282, "simple_hRise": 0.931, "simple_hTwist": 26.138 }, { "index": 8, "nt1": "///z/305", "nt2": "///z/312", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 3.289, -1.852, 0.031, 20.948, 23.634, -16.032 ], "step_params": [ -2.078, 0.799, 3.638, 7.577, -2.623, 58.072 ], "heli_params": [ 0.962, 2.546, 3.332, -2.688, -7.764, 58.575 ], "bp2_params": [ 0.220, -0.198, -1.004, 16.541, -8.514, 1.391 ], "groove_widths": [ 17.176, 13.551, 11.654, 11.089 ], "simple_Rise": 3.638, "simple_Twist": 78.102, "simple_hRise": 3.434, "simple_hTwist": 78.447 }, { "index": 9, "nt1": "///z/325", "nt2": "///z/311", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.220, -0.198, -1.004, 16.541, -8.514, 1.391 ], "step_params": [ 0.267, -2.735, 4.327, 4.338, -1.914, 22.025 ], "heli_params": [ -6.043, 1.493, 4.513, -4.936, -11.189, 22.524 ], "bp2_params": [ -0.016, -0.092, -0.255, 8.534, -10.965, -0.343 ], "groove_widths": [ 17.453, 14.691, 11.008, 9.297 ], "simple_Rise": 4.327, "simple_Twist": 23.132, "simple_hRise": 4.508, "simple_hTwist": 23.606 }, { "index": 10, "nt1": "///z/326", "nt2": "///z/310", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.016, -0.092, -0.255, 8.534, -10.965, -0.343 ], "step_params": [ 1.030, -1.755, 3.313, 5.956, 24.379, 31.126 ], "heli_params": [ -5.047, -0.910, 1.714, 38.545, -9.417, 39.787 ], "bp2_params": [ 0.204, -0.149, 0.061, 9.716, 10.491, 1.364 ], "groove_widths": [ 18.660, null, 16.191, null ], "simple_Rise": 3.313, "simple_Twist": 29.496, "simple_hRise": 1.626, "simple_hTwist": 38.547 }, { "index": 11, "nt1": "///z/327", "nt2": "///z/309", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.204, -0.149, 0.061, 9.716, 10.491, 1.364 ], "step_params": [ 0.964, -1.812, 3.454, -0.829, 23.754, 35.138 ], "heli_params": [ -4.715, -1.415, 1.890, 34.862, 1.217, 42.211 ], "bp2_params": [ -0.157, -0.394, 1.174, -6.189, -0.385, 0.691 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.454, "simple_Twist": 37.159, "simple_hRise": 1.982, "simple_hTwist": 43.883 }, { "index": 12, "nt1": "///z/328", "nt2": "///z/308", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.157, -0.394, 1.174, -6.189, -0.385, 0.691 ], "step_params": [ -0.081, -1.174, 3.236, -2.526, 2.270, 53.610 ], "heli_params": [ -1.439, -0.065, 3.188, 2.514, 2.797, 53.710 ], "bp2_params": [ 3.845, -2.141, 1.793, -3.345, 5.039, 6.062 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.236, "simple_Twist": 28.082, "simple_hRise": 3.128, "simple_hTwist": 28.282 }, { "index": 13, "nt1": "///z/329", "nt2": "///z/307", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] } ], "num_stems": 124, "stems": [ { "index": 1, "helix_index": 15, "strand1": "CUGG", "strand2": "GACC", "bp_type": "||||", "helix_form": ".AA", "helical_rise": 2.464, "helical_rise_std": 0.229, "helical_radius": 9.048, "helical_radius_std": 1.316, "helical_axis": [ -0.778, 0.539, 0.322 ], "point1": [ 203.129, 185.703, 188.122 ], "point2": [ 197.528, 189.587, 190.439 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/4", "nt2": "///2/20", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.116, -0.378, 1.114, 4.827, -2.343, -1.381 ], "step_params": [ -0.596, -1.843, 3.328, 1.820, 0.022, 34.964 ], "heli_params": [ -3.066, 1.268, 3.292, 0.037, -3.026, 35.009 ], "bp2_params": [ -0.081, -0.159, 0.541, 2.497, -3.247, 1.561 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.328, "simple_Twist": 35.956, "simple_hRise": 3.294, "simple_hTwist": 36.000 }, { "index": 2, "nt1": "///2/5", "nt2": "///2/19", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.081, -0.159, 0.541, 2.497, -3.247, 1.561 ], "step_params": [ -0.993, -1.764, 3.189, 3.582, 17.636, 36.500 ], "heli_params": [ -4.214, 1.771, 2.056, 26.286, -5.338, 40.559 ], "bp2_params": [ -0.204, -0.182, -0.625, -9.622, -6.747, 0.204 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.189, "simple_Twist": 37.142, "simple_hRise": 2.078, "simple_hTwist": 41.133 }, { "index": 3, "nt1": "///2/6", "nt2": "///2/18", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.204, -0.182, -0.625, -9.622, -6.747, 0.204 ], "step_params": [ 0.369, -1.219, 3.809, -2.926, 0.986, 31.413 ], "heli_params": [ -2.453, -1.306, 3.721, 1.815, 5.388, 31.561 ], "bp2_params": [ -0.032, 0.400, 0.142, -13.927, -3.177, 6.347 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.809, "simple_Twist": 30.616, "simple_hRise": 3.718, "simple_hTwist": 30.767 }, { "index": 4, "nt1": "///2/7", "nt2": "///2/17", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 2, "helix_index": 15, "strand1": "UCCU", "strand2": "AGGA", "bp_type": "||||", "helix_form": "A..", "helical_rise": 2.348, "helical_rise_std": 0.300, "helical_radius": 9.654, "helical_radius_std": 1.307, "helical_axis": [ 0.584, -0.795, -0.165 ], "point1": [ 190.168, 203.611, 195.388 ], "point2": [ 194.276, 198.025, 194.232 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/12", "nt2": "///2/1199", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.027, -0.145, -0.549, -7.738, 10.712, -1.541 ], "step_params": [ 0.580, -1.495, 3.042, -0.481, 9.355, 34.699 ], "heli_params": [ -3.591, -1.001, 2.558, 15.342, 0.789, 35.904 ], "bp2_params": [ 0.154, -0.119, -0.134, 0.627, 14.579, 0.033 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.042, "simple_Twist": 33.362, "simple_hRise": 2.535, "simple_hTwist": 34.617 }, { "index": 2, "nt1": "///2/13", "nt2": "///2/1198", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.119, -0.134, 0.627, 14.579, 0.033 ], "step_params": [ 0.884, -2.537, 3.036, 8.430, 20.753, 35.710 ], "heli_params": [ -5.197, -0.563, 1.558, 30.438, -12.364, 41.959 ], "bp2_params": [ 0.163, -0.129, -0.236, -6.023, -2.812, 0.172 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.036, "simple_Twist": 35.635, "simple_hRise": 1.555, "simple_hTwist": 41.896 }, { "index": 3, "nt1": "///2/14", "nt2": "///2/1197", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.163, -0.129, -0.236, -6.023, -2.812, 0.172 ], "step_params": [ -2.619, -1.889, 3.257, -1.556, 3.670, 39.037 ], "heli_params": [ -3.244, 3.717, 3.171, 5.475, 2.322, 39.232 ], "bp2_params": [ 2.779, 0.063, -0.163, -4.714, 3.484, -20.005 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.257, "simple_Twist": 26.440, "simple_hRise": 3.116, "simple_hTwist": 26.734 }, { "index": 4, "nt1": "///2/15", "nt2": "///2/1196", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 3, "helix_index": 15, "strand1": "UA", "strand2": "AU", "bp_type": "||", "helix_form": ".", "helical_rise": 2.397, "helical_rise_std": 0.052, "helical_radius": 8.485, "helical_radius_std": 0.699, "helical_axis": [ 0.778, -0.456, 0.433 ], "point1": [ 209.394, 183.220, 185.745 ], "point2": [ 211.256, 182.129, 186.780 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/21", "nt2": "///2/653", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.443, 0.379, -1.793, 7.323, -4.016, 1.402 ], "step_params": [ 0.284, -1.293, 3.949, -4.267, 22.205, 29.209 ], "heli_params": [ -5.329, -1.080, 2.360, 37.720, 7.248, 36.787 ], "bp2_params": [ 0.027, -0.094, -0.331, -4.721, -4.190, 3.588 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.949, "simple_Twist": 31.177, "simple_hRise": 2.470, "simple_hTwist": 38.348 }, { "index": 2, "nt1": "///2/22", "nt2": "///2/652", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 4, "helix_index": 15, "strand1": "AUAUGC", "strand2": "UAUGCG", "bp_type": "||||||", "helix_form": ".A..A", "helical_rise": 3.026, "helical_rise_std": 0.274, "helical_radius": 9.361, "helical_radius_std": 0.856, "helical_axis": [ 0.766, -0.420, 0.487 ], "point1": [ 218.696, 178.448, 186.569 ], "point2": [ 230.267, 172.102, 193.921 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/25", "nt2": "///2/649", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.413, 0.281, -0.867, -14.997, -10.602, 7.062 ], "step_params": [ -1.559, -0.804, 3.246, -4.426, 2.022, 31.880 ], "heli_params": [ -1.814, 2.006, 3.370, 3.655, 8.000, 32.240 ], "bp2_params": [ -0.082, -0.247, -1.033, -4.079, -3.885, -2.144 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.246, "simple_Twist": 30.563, "simple_hRise": 3.374, "simple_hTwist": 30.939 }, { "index": 2, "nt1": "///2/26", "nt2": "///2/648", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.082, -0.247, -1.033, -4.079, -3.885, -2.144 ], "step_params": [ 0.831, -0.945, 3.564, -3.634, 9.804, 32.935 ], "heli_params": [ -3.170, -1.986, 3.060, 16.773, 6.217, 34.511 ], "bp2_params": [ 0.653, 0.323, -0.617, -0.271, 6.585, 3.332 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.564, "simple_Twist": 28.959, "simple_hRise": 2.970, "simple_hTwist": 30.751 }, { "index": 3, "nt1": "///2/27", "nt2": "///2/647", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.653, 0.323, -0.617, -0.271, 6.585, 3.332 ], "step_params": [ 0.031, -1.438, 3.085, 2.829, 2.083, 34.682 ], "heli_params": [ -2.696, 0.348, 2.989, 3.482, -4.731, 34.854 ], "bp2_params": [ 1.677, -0.126, -0.724, 10.726, -0.439, -4.804 ], "groove_widths": [ 17.775, null, 18.928, null ], "simple_Rise": 3.085, "simple_Twist": 29.409, "simple_hRise": 2.968, "simple_hTwist": 29.614 }, { "index": 4, "nt1": "///2/28", "nt2": "///2/646", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.677, -0.126, -0.724, 10.726, -0.439, -4.804 ], "step_params": [ 0.589, -2.059, 3.413, -4.469, 10.021, 25.192 ], "heli_params": [ -6.595, -2.247, 2.304, 21.710, 9.682, 27.442 ], "bp2_params": [ -0.230, -0.151, 0.168, -0.033, 12.574, 3.092 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.413, "simple_Twist": 35.229, "simple_hRise": 2.656, "simple_hTwist": 36.846 }, { "index": 5, "nt1": "///2/29", "nt2": "///2/645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.230, -0.151, 0.168, -0.033, 12.574, 3.092 ], "step_params": [ 0.224, -1.837, 3.245, 2.342, 5.999, 31.321 ], "heli_params": [ -4.362, -0.007, 2.861, 10.967, -4.281, 31.960 ], "bp2_params": [ 0.171, -0.108, -0.220, 6.207, 14.340, 2.618 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.245, "simple_Twist": 28.707, "simple_hRise": 2.820, "simple_hTwist": 29.406 }, { "index": 6, "nt1": "///2/30", "nt2": "///2/644", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 5, "helix_index": 1, "strand1": "UC", "strand2": "AG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.318, "helical_rise_std": 0.007, "helical_radius": 10.363, "helical_radius_std": 0.894, "helical_axis": [ 0.836, -0.015, -0.549 ], "point1": [ 229.548, 161.317, 191.923 ], "point2": [ 231.485, 161.283, 190.650 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/36", "nt2": "///2/519", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.072, -0.091, -0.053, 0.869, 8.348, 2.863 ], "step_params": [ 0.404, -2.421, 3.334, 7.414, 9.934, 28.620 ], "heli_params": [ -6.248, 0.546, 2.408, 19.009, -14.186, 31.138 ], "bp2_params": [ 0.168, -0.163, -0.474, -3.495, 3.483, 0.688 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.334, "simple_Twist": 27.225, "simple_hRise": 2.353, "simple_hTwist": 29.865 }, { "index": 2, "nt1": "///2/37", "nt2": "///2/518", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 6, "helix_index": 2, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.254, "helical_rise_std": 0.084, "helical_radius": 10.306, "helical_radius_std": 0.984, "helical_axis": [ 0.360, -0.340, -0.869 ], "point1": [ 243.091, 178.339, 173.534 ], "point2": [ 244.686, 176.834, 169.688 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/47", "nt2": "///2/479", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.117, -0.253, -1.065, -6.650, 1.854, -0.922 ], "step_params": [ -0.217, -1.582, 3.244, -1.876, 2.828, 31.341 ], "heli_params": [ -3.424, 0.059, 3.101, 5.216, 3.460, 31.520 ], "bp2_params": [ 0.113, -0.219, -0.819, 0.322, 6.187, -1.084 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.244, "simple_Twist": 29.755, "simple_hRise": 3.092, "simple_hTwist": 29.943 }, { "index": 2, "nt1": "///2/48", "nt2": "///2/478", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.113, -0.219, -0.819, 0.322, 6.187, -1.084 ], "step_params": [ 1.038, -2.579, 3.532, 2.951, 10.481, 24.327 ], "heli_params": [ -8.186, -1.527, 2.346, 23.428, -6.597, 26.619 ], "bp2_params": [ 0.177, -0.169, -0.510, -0.081, -4.012, 1.790 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.532, "simple_Twist": 23.962, "simple_hRise": 2.326, "simple_hTwist": 26.287 }, { "index": 3, "nt1": "///2/49", "nt2": "///2/477", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 7, "helix_index": 2, "strand1": "UGC", "strand2": "ACG", "bp_type": "|||", "helix_form": ".A", "helical_rise": 1.475, "helical_rise_std": 0.580, "helical_radius": 7.901, "helical_radius_std": 0.687, "helical_axis": [ 0.716, -0.255, -0.650 ], "point1": [ 250.645, 172.551, 168.547 ], "point2": [ 252.666, 171.831, 166.712 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/51", "nt2": "///2/476", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.097, -0.246, 0.947, 4.229, 0.975, -1.932 ], "step_params": [ -0.750, -1.721, 2.922, -1.320, 29.845, 32.738 ], "heli_params": [ -4.305, 0.911, 1.084, 43.386, 1.918, 44.042 ], "bp2_params": [ -0.159, -0.112, 0.331, 7.268, -1.447, 1.040 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.922, "simple_Twist": 33.372, "simple_hRise": 1.116, "simple_hTwist": 44.505 }, { "index": 2, "nt1": "///2/52", "nt2": "///2/475", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.112, 0.331, 7.268, -1.447, 1.040 ], "step_params": [ 0.402, -1.655, 3.225, 1.606, 0.487, 36.302 ], "heli_params": [ -2.720, -0.424, 3.218, 0.782, -2.576, 36.340 ], "bp2_params": [ 0.233, -0.150, 0.152, 8.770, -10.089, 0.671 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.225, "simple_Twist": 34.211, "simple_hRise": 3.217, "simple_hTwist": 34.251 }, { "index": 3, "nt1": "///2/53", "nt2": "///2/474", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 8, "helix_index": 3, "strand1": "GU", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.786, "helical_rise_std": 0.021, "helical_radius": 10.771, "helical_radius_std": 1.977, "helical_axis": [ 0.631, -0.765, -0.129 ], "point1": [ 259.677, 160.874, 149.621 ], "point2": [ 262.066, 157.977, 149.132 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/56", "nt2": "///2/89", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.304, 0.574, -1.500, 0.281, -6.756, 4.417 ], "step_params": [ 0.428, -0.949, 3.660, 2.400, 1.161, 35.886 ], "heli_params": [ -1.722, -0.311, 3.649, 1.881, -3.889, 35.982 ], "bp2_params": [ 2.819, -0.345, -1.588, 7.815, -10.193, 1.721 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.660, "simple_Twist": 19.189, "simple_hRise": 3.622, "simple_hTwist": 19.371 }, { "index": 2, "nt1": "///2/57", "nt2": "///2/88", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 9, "helix_index": 3, "strand1": "GU", "strand2": "CA", "bp_type": "||", "helix_form": "A", "helical_rise": 3.571, "helical_rise_std": 0.006, "helical_radius": 10.021, "helical_radius_std": 0.819, "helical_axis": [ 0.719, -0.646, 0.256 ], "point1": [ 259.899, 149.747, 146.581 ], "point2": [ 262.467, 147.439, 147.495 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/62", "nt2": "///2/86", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.126, 0.065, 1.891, 3.185, 3.267 ], "step_params": [ 0.833, -2.339, 3.520, 2.504, 0.577, 29.673 ], "heli_params": [ -4.681, -1.057, 3.532, 1.123, -4.878, 29.782 ], "bp2_params": [ 0.010, -0.119, 0.230, 2.059, 3.087, 8.405 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.520, "simple_Twist": 28.308, "simple_hRise": 3.532, "simple_hTwist": 28.422 }, { "index": 2, "nt1": "///2/63", "nt2": "///2/85", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 10, "helix_index": 3, "strand1": "AC", "strand2": "UG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.370, "helical_rise_std": 0.013, "helical_radius": 9.907, "helical_radius_std": 0.782, "helical_axis": [ 0.745, -0.663, 0.076 ], "point1": [ 273.677, 141.505, 147.183 ], "point2": [ 276.186, 139.272, 147.440 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/68", "nt2": "///2/81", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.097, -0.135, -0.743, -3.824, 1.276, -0.298 ], "step_params": [ 0.503, -2.011, 3.497, 0.273, 2.034, 27.672 ], "heli_params": [ -4.708, -0.979, 3.348, 4.246, -0.571, 27.747 ], "bp2_params": [ 0.140, -0.138, -0.139, 0.739, 4.154, -1.033 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.497, "simple_Twist": 27.174, "simple_hRise": 3.345, "simple_hTwist": 27.250 }, { "index": 2, "nt1": "///2/69", "nt2": "///2/80", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 11, "helix_index": 5, "strand1": "CUC", "strand2": "GAG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 1.924, "helical_rise_std": 0.152, "helical_radius": 7.985, "helical_radius_std": 0.421, "helical_axis": [ -0.623, 0.027, 0.782 ], "point1": [ 235.297, 169.792, 157.025 ], "point2": [ 233.009, 169.891, 159.895 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/96", "nt2": "///2/434", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.015, 0.228, -0.932, -11.121, 0.282, -7.518 ], "step_params": [ 0.447, -0.971, 3.091, -2.795, 4.409, 30.703 ], "heli_params": [ -2.582, -1.323, 2.876, 8.252, 5.231, 31.133 ], "bp2_params": [ -0.091, -0.179, -0.860, 1.486, 3.388, -1.261 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.091, "simple_Twist": 31.507, "simple_hRise": 2.883, "simple_hTwist": 31.926 }, { "index": 2, "nt1": "///2/97", "nt2": "///2/433", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.091, -0.179, -0.860, 1.486, 3.388, -1.261 ], "step_params": [ 0.124, -1.039, 3.210, 3.528, 12.972, 34.750 ], "heli_params": [ -3.239, 0.243, 2.667, 20.782, -5.652, 37.185 ], "bp2_params": [ -0.040, 0.398, -0.572, 12.174, -12.294, -2.040 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.210, "simple_Twist": 34.534, "simple_hRise": 2.662, "simple_hTwist": 36.984 }, { "index": 3, "nt1": "///2/98", "nt2": "///2/432", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 12, "helix_index": 7, "strand1": "CAG", "strand2": "GUC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.440, "helical_rise_std": 0.207, "helical_radius": 8.396, "helical_radius_std": 0.173, "helical_axis": [ 0.238, -0.953, -0.190 ], "point1": [ 216.785, 176.127, 145.569 ], "point2": [ 217.935, 171.522, 144.650 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/106", "nt2": "///2/355", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.187, -0.594, -0.748, -0.799, 0.457 ], "step_params": [ -0.335, -1.310, 3.416, -3.289, 11.600, 30.487 ], "heli_params": [ -4.287, 0.038, 2.767, 21.054, 5.970, 32.732 ], "bp2_params": [ 0.037, -0.104, -0.219, -0.700, -1.258, 0.982 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.416, "simple_Twist": 31.216, "simple_hRise": 2.786, "simple_hTwist": 33.409 }, { "index": 2, "nt1": "///2/107", "nt2": "///2/354", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.037, -0.104, -0.219, -0.700, -1.258, 0.982 ], "step_params": [ -0.447, -1.194, 3.215, -0.597, 12.001, 28.904 ], "heli_params": [ -4.300, 0.726, 2.538, 22.837, 1.136, 31.253 ], "bp2_params": [ -0.178, -0.203, -0.461, 9.099, 14.286, -2.425 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.215, "simple_Twist": 30.030, "simple_hRise": 2.569, "simple_hTwist": 32.294 }, { "index": 3, "nt1": "///2/108", "nt2": "///2/353", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 13, "helix_index": 7, "strand1": "UU", "strand2": "AG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.221, "helical_rise_std": 0.017, "helical_radius": 10.571, "helical_radius_std": 1.566, "helical_axis": [ 0.586, -0.737, -0.337 ], "point1": [ 225.736, 161.646, 135.871 ], "point2": [ 227.621, 159.275, 134.786 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/115", "nt2": "///2/348", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.697, 0.549, -0.876, 2.639, 12.507, 8.549 ], "step_params": [ -0.752, -1.510, 3.239, 0.111, 2.193, 34.944 ], "heli_params": [ -2.832, 1.267, 3.139, 3.647, -0.184, 35.010 ], "bp2_params": [ 1.584, -0.771, -0.541, 11.168, 7.843, -7.700 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.239, "simple_Twist": 29.927, "simple_hRise": 3.121, "simple_hTwist": 30.006 }, { "index": 2, "nt1": "///2/116", "nt2": "///2/347", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 14, "helix_index": 7, "strand1": "UGG", "strand2": "ACC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.051, "helical_rise_std": 0.121, "helical_radius": 9.355, "helical_radius_std": 0.565, "helical_axis": [ 0.545, -0.678, -0.494 ], "point1": [ 236.713, 150.784, 133.599 ], "point2": [ 240.110, 146.555, 130.516 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/121", "nt2": "///2/343", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.063, -0.130, -0.511, -1.663, -4.626, 3.879 ], "step_params": [ -0.054, -1.343, 3.410, -3.007, 18.256, 30.322 ], "heli_params": [ -4.732, -0.327, 2.261, 31.489, 5.186, 35.408 ], "bp2_params": [ 0.434, 0.299, -0.567, -7.939, 12.019, 11.401 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.410, "simple_Twist": 28.018, "simple_hRise": 2.153, "simple_hTwist": 33.473 }, { "index": 2, "nt1": "///2/122", "nt2": "///2/342", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.434, 0.299, -0.567, -7.939, 12.019, 11.401 ], "step_params": [ -0.382, -1.611, 3.285, 2.246, 14.739, 30.641 ], "heli_params": [ -4.864, 0.975, 2.263, 26.044, -3.969, 33.998 ], "bp2_params": [ -0.166, -0.279, -1.050, -6.646, -4.962, 1.075 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.285, "simple_Twist": 33.743, "simple_hRise": 2.371, "simple_hTwist": 36.802 }, { "index": 3, "nt1": "///2/123", "nt2": "///2/341", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 15, "helix_index": 9, "strand1": "CG", "strand2": "GC", "bp_type": "||", "helix_form": "Z", "helical_rise": 4.213, "helical_rise_std": 0.052, "helical_radius": 12.906, "helical_radius_std": 3.971, "helical_axis": [ 0.867, -0.040, 0.497 ], "point1": [ 252.398, 141.706, 94.276 ], "point2": [ 256.041, 141.539, 96.366 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/129", "nt2": "///2/183", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.192, -0.139, 0.260, 4.490, 0.826, 2.488 ], "step_params": [ 0.217, 4.716, 3.398, -8.549, 1.115, -16.937 ], "heli_params": [ -14.878, -3.818, 2.855, -3.505, -26.879, -18.991 ], "bp2_params": [ -0.171, -0.202, -0.679, -2.015, 0.326, -1.573 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.398, "simple_Twist": -18.421, "simple_hRise": 2.916, "simple_hTwist": -20.323 }, { "index": 2, "nt1": "///2/130", "nt2": "///2/182", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 16, "helix_index": 8, "strand1": "UG", "strand2": "AC", "bp_type": "||", "helix_form": "A", "helical_rise": 2.673, "helical_rise_std": 0.004, "helical_radius": 10.578, "helical_radius_std": 1.552, "helical_axis": [ 0.820, -0.143, 0.555 ], "point1": [ 260.849, 148.927, 128.434 ], "point2": [ 263.040, 148.544, 129.917 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/144", "nt2": "///2/175", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.033, -0.122, -0.445, -1.329, -4.041, 2.172 ], "step_params": [ -0.697, -2.180, 3.316, -2.600, 6.541, 25.422 ], "heli_params": [ -6.428, 0.874, 2.736, 14.512, 5.769, 26.363 ], "bp2_params": [ -0.174, -0.109, -0.022, -0.709, 1.688, 1.116 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.316, "simple_Twist": 26.372, "simple_hRise": 2.760, "simple_hTwist": 27.279 }, { "index": 2, "nt1": "///2/145", "nt2": "///2/174", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 17, "helix_index": 8, "strand1": "CU", "strand2": "GA", "bp_type": "||", "helix_form": "A", "helical_rise": 2.585, "helical_rise_std": 0.024, "helical_radius": 8.713, "helical_radius_std": 1.192, "helical_axis": [ 0.389, 0.300, 0.871 ], "point1": [ 277.610, 160.822, 141.926 ], "point2": [ 278.616, 161.599, 144.178 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/151", "nt2": "///2/167", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.199, -0.574, -3.838, 9.450, -3.203 ], "step_params": [ 0.597, -2.033, 2.963, -3.678, 7.856, 35.946 ], "heli_params": [ -4.091, -1.356, 2.410, 12.507, 5.855, 36.945 ], "bp2_params": [ -0.136, -0.032, -0.175, 6.873, 10.507, -0.388 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.963, "simple_Twist": 37.198, "simple_hRise": 2.432, "simple_hTwist": 38.162 }, { "index": 2, "nt1": "///2/152", "nt2": "///2/166", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 18, "helix_index": 8, "strand1": "GG", "strand2": "UC", "bp_type": "||", "helix_form": ".", "helical_rise": 2.692, "helical_rise_std": 0.031, "helical_radius": 12.819, "helical_radius_std": 6.273, "helical_axis": [ 0.365, 0.301, 0.881 ], "point1": [ 271.328, 163.883, 153.887 ], "point2": [ 272.311, 164.694, 156.261 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/155", "nt2": "///2/163", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.214, -0.365, -0.088, -10.705, -2.897, -0.803 ], "step_params": [ -2.347, -0.962, 2.392, 3.288, 1.702, 35.499 ], "heli_params": [ -1.741, 4.159, 2.126, 2.782, -5.375, 35.686 ], "bp2_params": [ 0.923, 0.898, -0.388, 39.133, -5.970, -0.918 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.392, "simple_Twist": 19.389, "simple_hRise": 1.881, "simple_hTwist": 19.736 }, { "index": 2, "nt1": "///2/156", "nt2": "///2/162", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 19, "helix_index": 9, "strand1": "GCGC", "strand2": "UGCG", "bp_type": "||||", "helix_form": ".A.", "helical_rise": 2.861, "helical_rise_std": 0.193, "helical_radius": 9.096, "helical_radius_std": 0.452, "helical_axis": [ -0.559, 0.083, -0.825 ], "point1": [ 245.454, 144.990, 98.943 ], "point2": [ 240.651, 145.700, 91.862 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/185", "nt2": "///2/214", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.599, -0.825, -1.734, -15.833, -2.288, -5.306 ], "step_params": [ -0.136, -1.168, 3.435, -9.579, 5.601, 41.548 ], "heli_params": [ -2.171, -0.798, 3.212, 7.731, 13.222, 42.941 ], "bp2_params": [ 0.174, -0.200, -0.599, -9.975, 6.782, -0.254 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.435, "simple_Twist": 31.895, "simple_hRise": 3.102, "simple_hTwist": 33.723 }, { "index": 2, "nt1": "///2/186", "nt2": "///2/213", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.174, -0.200, -0.599, -9.975, 6.782, -0.254 ], "step_params": [ 0.543, -1.571, 3.051, -2.992, 7.601, 30.641 ], "heli_params": [ -4.095, -1.473, 2.535, 14.071, 5.540, 31.686 ], "bp2_params": [ -0.159, -0.123, 0.229, -5.587, 12.007, 2.064 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.051, "simple_Twist": 32.702, "simple_hRise": 2.573, "simple_hTwist": 33.680 }, { "index": 3, "nt1": "///2/187", "nt2": "///2/212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.123, 0.229, -5.587, 12.007, 2.064 ], "step_params": [ 0.749, -2.249, 3.040, 0.873, 9.533, 40.123 ], "heli_params": [ -4.077, -0.984, 2.480, 13.660, -1.251, 41.203 ], "bp2_params": [ 0.199, -0.142, 0.073, 6.109, 16.071, 2.943 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.040, "simple_Twist": 37.840, "simple_hRise": 2.440, "simple_hTwist": 38.989 }, { "index": 4, "nt1": "///2/188", "nt2": "///2/211", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 20, "helix_index": 9, "strand1": "CCCCC", "strand2": "GGGGG", "bp_type": "|||||", "helix_form": ".AAA", "helical_rise": 2.801, "helical_rise_std": 0.424, "helical_radius": 10.509, "helical_radius_std": 0.701, "helical_axis": [ -0.195, -0.395, -0.898 ], "point1": [ 234.189, 146.927, 78.580 ], "point2": [ 232.006, 142.508, 68.537 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/192", "nt2": "///2/207", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.880, -0.210, -0.503, -5.371, -21.191, -10.074 ], "step_params": [ 1.449, -1.912, 3.536, 1.459, 5.973, 31.628 ], "heli_params": [ -4.553, -2.343, 3.193, 10.831, -2.645, 32.205 ], "bp2_params": [ 0.173, -0.192, -0.419, -3.829, -1.397, -0.876 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.536, "simple_Twist": 26.390, "simple_hRise": 3.110, "simple_hTwist": 27.085 }, { "index": 2, "nt1": "///2/193", "nt2": "///2/206", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.173, -0.192, -0.419, -3.829, -1.397, -0.876 ], "step_params": [ -0.023, -1.638, 3.494, -3.772, 2.962, 33.088 ], "heli_params": [ -3.361, -0.613, 3.321, 5.167, 6.580, 33.424 ], "bp2_params": [ 0.172, -0.179, -0.566, -0.986, -3.038, 1.295 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.494, "simple_Twist": 33.019, "simple_hRise": 3.320, "simple_hTwist": 33.356 }, { "index": 3, "nt1": "///2/194", "nt2": "///2/205", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.172, -0.179, -0.566, -0.986, -3.038, 1.295 ], "step_params": [ 0.186, -2.340, 3.347, -5.599, 9.447, 32.323 ], "heli_params": [ -5.376, -1.138, 2.517, 16.390, 9.715, 34.090 ], "bp2_params": [ 0.182, -0.118, 0.084, -4.795, 14.907, 2.110 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.347, "simple_Twist": 32.153, "simple_hRise": 2.512, "simple_hTwist": 33.930 }, { "index": 4, "nt1": "///2/195", "nt2": "///2/204", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.182, -0.118, 0.084, -4.795, 14.907, 2.110 ], "step_params": [ -0.461, -2.554, 3.082, -0.229, 9.529, 31.518 ], "heli_params": [ -5.864, 0.782, 2.238, 17.060, 0.410, 32.893 ], "bp2_params": [ 0.280, -0.143, 0.121, -2.150, 25.759, 5.035 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.082, "simple_Twist": 31.281, "simple_hRise": 2.231, "simple_hTwist": 32.666 }, { "index": 5, "nt1": "///2/196", "nt2": "///2/203", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 21, "helix_index": 10, "strand1": "UUAUC", "strand2": "AAUAG", "bp_type": "|||||", "helix_form": "...A", "helical_rise": 2.370, "helical_rise_std": 0.277, "helical_radius": 9.473, "helical_radius_std": 0.516, "helical_axis": [ -0.933, 0.297, 0.204 ], "point1": [ 235.963, 156.519, 108.386 ], "point2": [ 227.200, 159.314, 110.303 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/219", "nt2": "///2/302", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.117, -0.352, -1.129, -14.435, 1.151, -0.701 ], "step_params": [ -0.992, -1.486, 3.708, -7.735, 5.249, 19.277 ], "heli_params": [ -6.425, -0.899, 3.338, 14.614, 21.534, 21.405 ], "bp2_params": [ -0.070, -0.094, -0.457, -9.788, 6.451, 2.941 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.708, "simple_Twist": 19.209, "simple_hRise": 3.335, "simple_hTwist": 21.343 }, { "index": 2, "nt1": "///2/220", "nt2": "///2/301", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.070, -0.094, -0.457, -9.788, 6.451, 2.941 ], "step_params": [ 0.699, -1.372, 3.033, -5.318, 17.973, 33.901 ], "heli_params": [ -3.889, -1.595, 1.961, 28.301, 8.374, 38.604 ], "bp2_params": [ 0.815, 0.321, 0.032, -5.391, -8.423, 13.153 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.033, "simple_Twist": 28.850, "simple_hRise": 1.753, "simple_hTwist": 34.296 }, { "index": 3, "nt1": "///2/221", "nt2": "///2/300", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.815, 0.321, 0.032, -5.391, -8.423, 13.153 ], "step_params": [ -0.537, -2.062, 3.412, -1.590, 4.789, 26.562 ], "heli_params": [ -5.621, 0.749, 3.026, 10.304, 3.421, 27.029 ], "bp2_params": [ -0.014, -0.124, -0.358, -5.724, 3.010, 4.623 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.412, "simple_Twist": 31.210, "simple_hRise": 3.092, "simple_hTwist": 31.605 }, { "index": 4, "nt1": "///2/222", "nt2": "///2/299", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.014, -0.124, -0.358, -5.724, 3.010, 4.623 ], "step_params": [ -0.348, -1.855, 3.081, -2.084, 8.255, 34.279 ], "heli_params": [ -4.137, 0.302, 2.595, 13.744, 3.470, 35.290 ], "bp2_params": [ 0.163, -0.111, -0.001, -3.750, 3.798, 0.342 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.081, "simple_Twist": 33.223, "simple_hRise": 2.576, "simple_hTwist": 34.267 }, { "index": 5, "nt1": "///2/223", "nt2": "///2/298", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 22, "helix_index": 11, "strand1": "UC", "strand2": "AG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.984, "helical_rise_std": 0.009, "helical_radius": 10.049, "helical_radius_std": 0.970, "helical_axis": [ 0.608, -0.794, -0.025 ], "point1": [ 250.931, 138.091, 130.286 ], "point2": [ 252.745, 135.723, 130.210 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/314", "nt2": "///2/336", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.019, -0.177, 0.587, 7.923, 5.166, 5.393 ], "step_params": [ -0.650, -2.154, 3.243, 6.524, 3.362, 33.725 ], "heli_params": [ -4.125, 2.050, 2.850, 5.712, -11.082, 34.491 ], "bp2_params": [ 0.176, -0.140, -0.172, 1.552, -1.379, 0.818 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.243, "simple_Twist": 32.693, "simple_hRise": 2.835, "simple_hTwist": 33.485 }, { "index": 2, "nt1": "///2/315", "nt2": "///2/335", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 23, "helix_index": 11, "strand1": "CGC", "strand2": "GCG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.926, "helical_rise_std": 0.181, "helical_radius": 9.701, "helical_radius_std": 1.266, "helical_axis": [ 0.351, -0.699, -0.623 ], "point1": [ 258.450, 125.983, 128.053 ], "point2": [ 261.243, 120.419, 123.100 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/319", "nt2": "///2/332", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.235, -0.175, 0.619, -0.072, 2.857, 3.701 ], "step_params": [ 0.175, -1.760, 3.454, 2.679, -0.471, 23.209 ], "heli_params": [ -4.175, 0.541, 3.486, -1.166, -6.631, 23.365 ], "bp2_params": [ -0.177, -0.131, 0.169, 3.870, 0.546, 0.414 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.454, "simple_Twist": 25.496, "simple_hRise": 3.485, "simple_hTwist": 25.638 }, { "index": 2, "nt1": "///2/320", "nt2": "///2/331", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.177, -0.131, 0.169, 3.870, 0.546, 0.414 ], "step_params": [ -1.415, -1.974, 3.337, 1.486, 0.055, 37.474 ], "heli_params": [ -3.078, 2.398, 3.278, 0.085, -2.311, 37.503 ], "bp2_params": [ 0.541, -0.315, -0.417, 3.048, -2.118, -17.439 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.337, "simple_Twist": 33.537, "simple_hRise": 3.270, "simple_hTwist": 33.569 }, { "index": 3, "nt1": "///2/321", "nt2": "///2/330", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 24, "helix_index": 6, "strand1": "CCU", "strand2": "GGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.821, "helical_rise_std": 0.138, "helical_radius": 9.688, "helical_radius_std": 0.558, "helical_axis": [ -0.889, 0.410, -0.206 ], "point1": [ 218.845, 187.901, 153.831 ], "point2": [ 213.934, 190.165, 152.691 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/357", "nt2": "///2/405", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.183, -0.175, 0.488, 4.124, 0.370, 0.926 ], "step_params": [ 0.073, -1.968, 3.186, 2.160, 0.458, 33.039 ], "heli_params": [ -3.528, 0.226, 3.158, 0.804, -3.793, 33.110 ], "bp2_params": [ 0.178, -0.127, 0.201, 2.788, -0.515, 1.402 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.186, "simple_Twist": 33.016, "simple_hRise": 3.157, "simple_hTwist": 33.088 }, { "index": 2, "nt1": "///2/358", "nt2": "///2/404", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.127, 0.201, 2.788, -0.515, 1.402 ], "step_params": [ 0.677, -1.842, 3.467, 1.830, -0.276, 35.415 ], "heli_params": [ -2.981, -0.826, 3.510, -0.453, -3.006, 35.462 ], "bp2_params": [ 2.424, 0.102, 0.331, 0.891, -0.309, 13.630 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.467, "simple_Twist": 23.133, "simple_hRise": 3.530, "simple_hTwist": 23.206 }, { "index": 3, "nt1": "///2/359", "nt2": "///2/403", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 25, "helix_index": 12, "strand1": "ACU", "strand2": "UGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.596, "helical_rise_std": 0.155, "helical_radius": 9.852, "helical_radius_std": 1.645, "helical_axis": [ 0.839, 0.533, -0.106 ], "point1": [ 208.658, 199.764, 134.543 ], "point2": [ 212.962, 202.500, 133.997 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/364", "nt2": "///2/396", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.010, -0.148, 0.214, -5.045, 8.812, 8.695 ], "step_params": [ -0.074, -2.281, 3.278, -1.237, 4.074, 31.557 ], "heli_params": [ -4.871, -0.081, 2.969, 7.449, 2.261, 31.835 ], "bp2_params": [ 0.274, -0.170, 0.596, -4.003, 13.380, 5.723 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.278, "simple_Twist": 29.936, "simple_hRise": 2.950, "simple_hTwist": 30.230 }, { "index": 2, "nt1": "///2/365", "nt2": "///2/395", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.274, -0.170, 0.596, -4.003, 13.380, 5.723 ], "step_params": [ 0.165, -2.290, 3.235, 1.551, 6.297, 42.330 ], "heli_params": [ -3.730, -0.080, 2.885, 8.659, -2.133, 42.801 ], "bp2_params": [ 1.903, -0.607, 0.852, -2.685, 23.132, 0.564 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.235, "simple_Twist": 33.760, "simple_hRise": 2.780, "simple_hTwist": 34.359 }, { "index": 3, "nt1": "///2/366", "nt2": "///2/394", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 26, "helix_index": 13, "strand1": "AUGGUAG", "strand2": "UACCAUC", "bp_type": "|||||||", "helix_form": ".A.AAA", "helical_rise": 2.531, "helical_rise_std": 0.426, "helical_radius": 9.127, "helical_radius_std": 0.779, "helical_axis": [ 0.248, -0.967, -0.054 ], "point1": [ 222.968, 197.645, 124.426 ], "point2": [ 226.721, 182.998, 123.605 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///2/371", "nt2": "///2/393", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.947, 0.843, 0.080, -12.079, 3.339, 9.396 ], "step_params": [ -1.117, -1.312, 3.320, -4.863, 3.890, 39.559 ], "heli_params": [ -2.370, 1.066, 3.290, 5.704, 7.131, 40.027 ], "bp2_params": [ 0.004, -0.098, 0.212, 1.985, 5.044, 5.061 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.320, "simple_Twist": 29.673, "simple_hRise": 3.263, "simple_hTwist": 30.305 }, { "index": 2, "nt1": "///2/372", "nt2": "///2/392", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.004, -0.098, 0.212, 1.985, 5.044, 5.061 ], "step_params": [ 0.179, -1.532, 3.129, 6.355, 28.525, 33.294 ], "heli_params": [ -4.224, 0.248, 1.452, 41.291, -9.199, 44.026 ], "bp2_params": [ -0.208, -0.161, -0.710, -8.066, -9.210, 2.557 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.129, "simple_Twist": 34.457, "simple_hRise": 1.508, "simple_hTwist": 44.892 }, { "index": 3, "nt1": "///2/373", "nt2": "///2/391", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.208, -0.161, -0.710, -8.066, -9.210, 2.557 ], "step_params": [ -1.484, -2.081, 3.734, -6.687, 5.254, 27.633 ], "heli_params": [ -5.500, 1.284, 3.540, 10.684, 13.598, 28.888 ], "bp2_params": [ -0.097, -0.168, -0.955, -15.462, 4.090, -2.348 ], "groove_widths": [ 17.844, null, 17.551, null ], "simple_Rise": 3.734, "simple_Twist": 27.093, "simple_hRise": 3.533, "simple_hTwist": 28.373 }, { "index": 4, "nt1": "///2/374", "nt2": "///2/390", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.097, -0.168, -0.955, -15.462, 4.090, -2.348 ], "step_params": [ -0.324, -1.512, 3.314, -8.082, 6.711, 30.740 ], "heli_params": [ -3.862, -0.811, 2.918, 12.219, 14.717, 32.444 ], "bp2_params": [ -0.069, -0.068, -0.097, -7.542, 14.058, -0.640 ], "groove_widths": [ 18.358, null, 16.043, null ], "simple_Rise": 3.314, "simple_Twist": 30.695, "simple_hRise": 2.917, "simple_hTwist": 32.402 }, { "index": 5, "nt1": "///2/375", "nt2": "///2/389", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.069, -0.068, -0.097, -7.542, 14.058, -0.640 ], "step_params": [ 0.322, -1.073, 3.111, 1.947, 27.400, 37.421 ], "heli_params": [ -3.402, -0.266, 1.946, 37.210, -2.644, 46.127 ], "bp2_params": [ 0.051, -0.062, -0.371, -9.784, -9.904, -0.371 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.111, "simple_Twist": 36.312, "simple_hRise": 1.905, "simple_hTwist": 45.250 }, { "index": 6, "nt1": "///2/376", "nt2": "///2/388", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.051, -0.062, -0.371, -9.784, -9.904, -0.371 ], "step_params": [ -0.024, -1.755, 3.579, -2.274, 0.366, 25.586 ], "heli_params": [ -4.060, -0.644, 3.542, 0.825, 5.121, 25.688 ], "bp2_params": [ -0.209, -0.184, -0.660, -9.527, -7.986, 0.927 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.579, "simple_Twist": 26.970, "simple_hRise": 3.545, "simple_hTwist": 27.066 }, { "index": 7, "nt1": "///2/377", "nt2": "///2/387", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 27, "helix_index": 5, "strand1": "CGG", "strand2": "GCC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.650, "helical_rise_std": 0.045, "helical_radius": 9.290, "helical_radius_std": 1.087, "helical_axis": [ -0.793, 0.033, 0.608 ], "point1": [ 229.850, 170.224, 160.644 ], "point2": [ 225.646, 170.401, 163.869 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/409", "nt2": "///2/431", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.153, -0.150, -0.445, 2.364, -0.425, 0.346 ], "step_params": [ -0.479, -1.778, 3.333, -2.617, 14.178, 31.512 ], "heli_params": [ -4.996, 0.436, 2.370, 24.561, 4.534, 34.578 ], "bp2_params": [ -0.202, -0.139, -0.014, -0.556, 4.346, 0.730 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.333, "simple_Twist": 33.683, "simple_hRise": 2.442, "simple_hTwist": 36.556 }, { "index": 2, "nt1": "///2/410", "nt2": "///2/430", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.202, -0.139, -0.014, -0.556, 4.346, 0.730 ], "step_params": [ 0.804, -1.619, 3.381, 3.029, 8.413, 32.736 ], "heli_params": [ -4.108, -0.899, 2.947, 14.590, -5.253, 33.903 ], "bp2_params": [ 0.408, 0.179, -0.208, -1.401, -4.892, 9.296 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.381, "simple_Twist": 29.471, "simple_hRise": 2.886, "simple_hTwist": 30.768 }, { "index": 3, "nt1": "///2/411", "nt2": "///2/429", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 28, "helix_index": 14, "strand1": "GAAU", "strand2": "CUUG", "bp_type": "||||", "helix_form": "AA.", "helical_rise": 3.365, "helical_rise_std": 0.315, "helical_radius": 9.143, "helical_radius_std": 0.501, "helical_axis": [ -0.659, -0.366, 0.657 ], "point1": [ 213.700, 174.086, 166.035 ], "point2": [ 207.016, 170.376, 172.692 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/413", "nt2": "///2/424", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.186, -0.192, -0.700, -6.625, -1.716, -0.008 ], "step_params": [ -0.441, -1.795, 3.510, -1.745, 1.448, 34.555 ], "heli_params": [ -3.253, 0.456, 3.452, 2.434, 2.933, 34.627 ], "bp2_params": [ 0.078, -0.125, -0.651, -8.757, 3.891, 1.110 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.510, "simple_Twist": 33.313, "simple_hRise": 3.449, "simple_hTwist": 33.388 }, { "index": 2, "nt1": "///2/414", "nt2": "///2/423", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.078, -0.125, -0.651, -8.757, 3.891, 1.110 ], "step_params": [ -0.363, -1.633, 3.289, -0.890, 3.622, 30.434 ], "heli_params": [ -3.788, 0.516, 3.088, 6.867, 1.688, 30.656 ], "bp2_params": [ 0.119, -0.108, -0.406, -2.673, 10.274, -1.438 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.289, "simple_Twist": 30.339, "simple_hRise": 3.087, "simple_hTwist": 30.562 }, { "index": 3, "nt1": "///2/415", "nt2": "///2/422", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.119, -0.108, -0.406, -2.673, 10.274, -1.438 ], "step_params": [ 1.335, -1.111, 3.264, 0.901, 5.053, 41.878 ], "heli_params": [ -2.055, -1.764, 3.142, 7.038, -1.255, 42.177 ], "bp2_params": [ 3.148, -0.465, -0.133, 9.923, 13.983, 6.133 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.264, "simple_Twist": 24.803, "simple_hRise": 3.026, "simple_hTwist": 25.321 }, { "index": 4, "nt1": "///2/416", "nt2": "///2/421", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 29, "helix_index": 4, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": ".", "helical_rise": 3.187, "helical_rise_std": 0.006, "helical_radius": 8.452, "helical_radius_std": 0.707, "helical_axis": [ -0.651, -0.423, -0.630 ], "point1": [ 253.205, 186.255, 154.188 ], "point2": [ 251.130, 184.907, 152.179 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/436", "nt2": "///2/457", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.081, -0.452, -1.769, -18.478, 0.368, -7.866 ], "step_params": [ -0.342, -0.024, 2.886, -2.565, 5.848, 24.782 ], "heli_params": [ -1.529, 0.127, 2.826, 13.345, 5.852, 25.579 ], "bp2_params": [ -0.067, -0.512, -1.495, 6.082, 5.102, -7.076 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.886, "simple_Twist": 26.645, "simple_hRise": 2.836, "simple_hTwist": 27.386 }, { "index": 2, "nt1": "///2/437", "nt2": "///2/456", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 30, "helix_index": 4, "strand1": "AGC", "strand2": "UCG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.535, "helical_rise_std": 0.113, "helical_radius": 10.029, "helical_radius_std": 1.138, "helical_axis": [ -0.582, -0.596, -0.553 ], "point1": [ 248.397, 180.601, 150.492 ], "point2": [ 245.551, 177.686, 147.788 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/439", "nt2": "///2/454", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.052, -0.071, 0.140, -2.257, -5.809, 2.449 ], "step_params": [ -0.069, -1.687, 3.502, 1.050, 1.010, 30.325 ], "heli_params": [ -3.437, 0.355, 3.441, 1.929, -2.006, 30.359 ], "bp2_params": [ -0.198, -0.169, -0.631, -2.620, -4.950, 2.623 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.502, "simple_Twist": 31.747, "simple_hRise": 3.444, "simple_hTwist": 31.779 }, { "index": 2, "nt1": "///2/440", "nt2": "///2/453", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.169, -0.631, -2.620, -4.950, 2.623 ], "step_params": [ 0.094, -1.668, 3.472, -0.753, 0.110, 32.125 ], "heli_params": [ -3.035, -0.313, 3.463, 0.199, 1.360, 32.134 ], "bp2_params": [ 0.189, -0.107, -0.105, -2.246, -4.788, 0.883 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.472, "simple_Twist": 29.867, "simple_hRise": 3.462, "simple_hTwist": 29.877 }, { "index": 3, "nt1": "///2/441", "nt2": "///2/452", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 31, "helix_index": 4, "strand1": "UC", "strand2": "AG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.846, "helical_rise_std": 0.001, "helical_radius": 9.839, "helical_radius_std": 0.686, "helical_axis": [ 0.616, 0.476, 0.628 ], "point1": [ 264.116, 189.568, 156.322 ], "point2": [ 265.869, 190.921, 158.109 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/461", "nt2": "///2/468", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.105, -0.149, -0.587, -4.706, 4.906, 1.438 ], "step_params": [ -0.795, -1.677, 3.166, -3.931, 5.572, 28.885 ], "heli_params": [ -4.376, 0.778, 2.880, 10.979, 7.746, 29.663 ], "bp2_params": [ 0.171, -0.155, -0.233, 4.754, 6.889, 0.320 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.166, "simple_Twist": 27.389, "simple_hRise": 2.860, "simple_hTwist": 28.210 }, { "index": 2, "nt1": "///2/462", "nt2": "///2/467", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 32, "helix_index": 1, "strand1": "ACC", "strand2": "UGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.414, "helical_rise_std": 0.107, "helical_radius": 8.681, "helical_radius_std": 0.536, "helical_axis": [ 0.753, -0.150, -0.641 ], "point1": [ 244.068, 160.128, 174.066 ], "point2": [ 247.646, 159.415, 171.018 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/489", "nt2": "///2/511", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.071, -0.124, -0.569, -3.586, 3.048, -1.824 ], "step_params": [ -0.591, -1.926, 3.246, -1.349, 3.615, 38.568 ], "heli_params": [ -3.331, 0.731, 3.079, 5.457, 2.037, 38.753 ], "bp2_params": [ 0.162, -0.176, -0.496, 0.749, 7.644, -0.322 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.246, "simple_Twist": 38.239, "simple_hRise": 3.077, "simple_hTwist": 38.426 }, { "index": 2, "nt1": "///2/490", "nt2": "///2/510", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.162, -0.176, -0.496, 0.749, 7.644, -0.322 ], "step_params": [ 0.126, -1.725, 3.225, 5.537, 11.734, 31.325 ], "heli_params": [ -4.667, 0.587, 2.429, 20.657, -9.747, 33.844 ], "bp2_params": [ 0.177, -0.201, -0.703, -0.383, -0.466, 0.561 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.225, "simple_Twist": 31.392, "simple_hRise": 2.431, "simple_hTwist": 33.905 }, { "index": 3, "nt1": "///2/491", "nt2": "///2/509", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 33, "helix_index": 1, "strand1": "CCC", "strand2": "GGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 1.975, "helical_rise_std": 0.206, "helical_radius": 8.771, "helical_radius_std": 1.170, "helical_axis": [ -0.256, -0.261, -0.931 ], "point1": [ 247.626, 146.408, 161.844 ], "point2": [ 246.659, 145.422, 158.325 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/496", "nt2": "///2/506", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.155, -0.127, -0.231, -0.217, -3.453, 0.524 ], "step_params": [ -0.425, -1.486, 3.605, 0.219, 2.166, 31.347 ], "heli_params": [ -3.185, 0.829, 3.494, 4.003, -0.404, 31.421 ], "bp2_params": [ 0.158, -0.224, -0.767, 0.724, 0.192, -0.186 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.605, "simple_Twist": 31.505, "simple_hRise": 3.494, "simple_hTwist": 31.578 }, { "index": 2, "nt1": "///2/497", "nt2": "///2/505", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.158, -0.224, -0.767, 0.724, 0.192, -0.186 ], "step_params": [ -0.387, -1.783, 3.360, -5.045, 13.695, 30.521 ], "heli_params": [ -5.131, -0.093, 2.397, 24.345, 8.968, 33.756 ], "bp2_params": [ 0.079, 0.113, -0.126, 2.743, 23.480, -4.151 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.360, "simple_Twist": 30.860, "simple_hRise": 2.409, "simple_hTwist": 34.061 }, { "index": 3, "nt1": "///2/498", "nt2": "///2/504", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 34, "helix_index": 18, "strand1": "AA", "strand2": "UU", "bp_type": "||", "helix_form": "A", "helical_rise": 2.859, "helical_rise_std": 0.052, "helical_radius": 9.073, "helical_radius_std": 0.712, "helical_axis": [ -0.944, 0.060, 0.323 ], "point1": [ 219.171, 149.715, 222.751 ], "point2": [ 216.471, 149.887, 223.675 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/528", "nt2": "///2/557", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.079, -0.159, -0.645, 0.550, 0.567, 1.766 ], "step_params": [ -0.475, -1.124, 3.221, 0.640, 8.583, 31.360 ], "heli_params": [ -3.421, 0.954, 2.814, 15.516, -1.157, 32.491 ], "bp2_params": [ 0.043, -0.289, -0.893, 11.404, 9.392, -1.015 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.221, "simple_Twist": 31.277, "simple_hRise": 2.812, "simple_hTwist": 32.412 }, { "index": 2, "nt1": "///2/529", "nt2": "///2/556", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 35, "helix_index": 17, "strand1": "CAGG", "strand2": "GUCC", "bp_type": "||||", "helix_form": "...", "helical_rise": 3.397, "helical_rise_std": 0.402, "helical_radius": 9.693, "helical_radius_std": 2.329, "helical_axis": [ -0.949, -0.283, -0.137 ], "point1": [ 207.863, 151.688, 223.961 ], "point2": [ 198.235, 148.818, 222.574 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/532", "nt2": "///2/552", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.318, -0.151, 0.405, -0.602, 12.211, 6.681 ], "step_params": [ -2.614, -0.199, 2.948, 3.052, 15.661, 40.992 ], "heli_params": [ -1.557, 3.752, 2.521, 21.411, -4.173, 43.863 ], "bp2_params": [ 0.091, -0.276, -1.120, -5.101, -3.601, -2.234 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.948, "simple_Twist": 41.804, "simple_hRise": 2.533, "simple_hTwist": 44.618 }, { "index": 2, "nt1": "///2/533", "nt2": "///2/551", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.091, -0.276, -1.120, -5.101, -3.601, -2.234 ], "step_params": [ 3.885, -0.689, 4.301, 0.933, -19.382, 17.022 ], "heli_params": [ 6.319, -8.335, 3.510, -49.062, -2.361, 25.759 ], "bp2_params": [ -0.105, -0.363, -1.220, -3.145, -0.554, -1.539 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.301, "simple_Twist": 18.659, "simple_hRise": 3.628, "simple_hTwist": 26.858 }, { "index": 3, "nt1": "///2/534", "nt2": "///2/550", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.105, -0.363, -1.220, -3.145, -0.554, -1.539 ], "step_params": [ -2.757, -1.963, 3.713, -1.475, -1.347, 32.911 ], "heli_params": [ -3.192, 4.566, 3.905, -2.376, 2.601, 32.970 ], "bp2_params": [ 2.572, 0.503, -0.678, -9.931, -0.130, -23.761 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.713, "simple_Twist": 20.303, "simple_hRise": 4.021, "simple_hTwist": 20.400 }, { "index": 4, "nt1": "///2/535", "nt2": "///2/549", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 36, "helix_index": 17, "strand1": "CUC", "strand2": "GAG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.540, "helical_rise_std": 0.078, "helical_radius": 9.133, "helical_radius_std": 1.042, "helical_axis": [ -0.788, 0.456, 0.413 ], "point1": [ 195.785, 148.042, 229.777 ], "point2": [ 190.124, 151.318, 232.743 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/537", "nt2": "///2/546", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.232, -0.145, 0.471, -2.743, 11.533, 5.035 ], "step_params": [ -1.020, -2.144, 3.331, -0.282, 4.465, 24.307 ], "heli_params": [ -6.319, 2.300, 2.907, 10.489, 0.662, 24.709 ], "bp2_params": [ -0.657, -0.350, 0.241, 1.809, 22.352, -2.769 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.331, "simple_Twist": 29.136, "simple_hRise": 2.986, "simple_hTwist": 29.470 }, { "index": 2, "nt1": "///2/538", "nt2": "///2/545", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.657, -0.350, 0.241, 1.809, 22.352, -2.769 ], "step_params": [ -0.725, -2.033, 3.092, 0.804, 2.331, 30.337 ], "heli_params": [ -4.300, 1.528, 2.911, 4.444, -1.533, 30.435 ], "bp2_params": [ -0.499, -0.407, -0.020, 15.869, 20.935, -8.398 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.092, "simple_Twist": 28.534, "simple_hRise": 2.899, "simple_hTwist": 28.639 }, { "index": 3, "nt1": "///2/539", "nt2": "///2/544", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 37, "helix_index": 18, "strand1": "GU", "strand2": "CA", "bp_type": "||", "helix_form": ".", "helical_rise": 2.793, "helical_rise_std": 0.003, "helical_radius": 10.270, "helical_radius_std": 0.906, "helical_axis": [ 0.621, 0.107, -0.777 ], "point1": [ 236.096, 140.773, 202.148 ], "point2": [ 237.830, 141.073, 199.977 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/565", "nt2": "///2/585", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.598, -0.244, -0.019, 5.616, 14.385, -8.232 ], "step_params": [ -0.870, -2.455, 3.250, 0.557, 2.553, 22.956 ], "heli_params": [ -6.976, 2.356, 2.942, 6.387, -1.395, 23.102 ], "bp2_params": [ -0.025, 0.292, -0.510, 14.275, 11.856, -7.696 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.250, "simple_Twist": 25.714, "simple_hRise": 2.977, "simple_hTwist": 25.844 }, { "index": 2, "nt1": "///2/566", "nt2": "///2/584", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 38, "helix_index": 19, "strand1": "UGGA", "strand2": "ACCU", "bp_type": "||||", "helix_form": "...", "helical_rise": 3.319, "helical_rise_std": 0.431, "helical_radius": 9.763, "helical_radius_std": 0.531, "helical_axis": [ -0.018, 0.847, 0.531 ], "point1": [ 219.302, 168.899, 208.358 ], "point2": [ 219.117, 177.421, 213.702 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/596", "nt2": "///2/640", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.357, -1.244, -12.235, 6.045, -3.562 ], "step_params": [ 1.067, -1.056, 3.230, -3.459, 23.001, 30.052 ], "heli_params": [ -4.219, -2.036, 1.861, 38.017, 5.718, 37.837 ], "bp2_params": [ 0.074, 0.889, 0.149, -8.441, -18.461, -0.435 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.230, "simple_Twist": 28.393, "simple_hRise": 1.777, "simple_hTwist": 36.552 }, { "index": 2, "nt1": "///2/597", "nt2": "///2/639", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.074, 0.889, 0.149, -8.441, -18.461, -0.435 ], "step_params": [ 1.000, -1.797, 3.278, 0.544, 2.965, 26.307 ], "heli_params": [ -4.689, -2.043, 3.080, 6.488, -1.191, 26.476 ], "bp2_params": [ -0.747, -0.148, 0.140, -3.349, -20.437, 8.968 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.278, "simple_Twist": 30.951, "simple_hRise": 3.113, "simple_hTwist": 31.094 }, { "index": 3, "nt1": "///2/598", "nt2": "///2/638", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.747, -0.148, 0.140, -3.349, -20.437, 8.968 ], "step_params": [ -0.659, -1.382, 3.875, 0.936, 0.623, 40.370 ], "heli_params": [ -2.085, 1.079, 3.839, 0.903, -1.356, 40.385 ], "bp2_params": [ 0.609, 0.277, -0.182, -14.133, -15.028, 4.066 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.875, "simple_Twist": 32.659, "simple_hRise": 3.829, "simple_hTwist": 32.678 }, { "index": 4, "nt1": "///2/599", "nt2": "///2/637", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 39, "helix_index": 19, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": "A", "helical_rise": 3.119, "helical_rise_std": 0.063, "helical_radius": 8.768, "helical_radius_std": 0.457, "helical_axis": [ -0.133, -0.907, -0.399 ], "point1": [ 210.644, 189.940, 204.343 ], "point2": [ 210.231, 187.109, 203.099 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/600", "nt2": "///2/622", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.161, -0.470, -2.548, -3.109, 0.014 ], "step_params": [ -0.614, -1.196, 3.442, -2.550, 8.180, 32.375 ], "heli_params": [ -3.450, 0.639, 3.094, 14.359, 4.477, 33.460 ], "bp2_params": [ -0.147, -0.258, -0.786, -0.047, 9.131, -2.773 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.442, "simple_Twist": 32.164, "simple_hRise": 3.091, "simple_hTwist": 33.257 }, { "index": 2, "nt1": "///2/601", "nt2": "///2/621", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 40, "helix_index": 19, "strand1": "CUGG", "strand2": "GACC", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 1.802, "helical_rise_std": 0.335, "helical_radius": 8.236, "helical_radius_std": 0.743, "helical_axis": [ -0.297, 0.767, 0.569 ], "point1": [ 215.983, 183.892, 216.827 ], "point2": [ 214.413, 187.939, 219.827 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/608", "nt2": "///2/635", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.176, 0.308, 2.366, 8.535, 0.451 ], "step_params": [ 0.824, -1.760, 3.088, 1.487, 5.261, 34.024 ], "heli_params": [ -3.716, -1.180, 2.825, 8.919, -2.521, 34.447 ], "bp2_params": [ -0.005, -0.111, 0.333, 5.923, 3.660, 1.088 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.088, "simple_Twist": 35.231, "simple_hRise": 2.835, "simple_hTwist": 35.640 }, { "index": 2, "nt1": "///2/609", "nt2": "///2/634", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.005, -0.111, 0.333, 5.923, 3.660, 1.088 ], "step_params": [ -0.199, -1.844, 2.969, 2.565, 25.777, 33.096 ], "heli_params": [ -4.556, 0.475, 1.253, 38.729, -3.854, 41.804 ], "bp2_params": [ -0.199, -0.147, -0.393, -1.856, -8.317, 1.995 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.969, "simple_Twist": 34.092, "simple_hRise": 1.302, "simple_hTwist": 42.583 }, { "index": 3, "nt1": "///2/610", "nt2": "///2/633", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.199, -0.147, -0.393, -1.856, -8.317, 1.995 ], "step_params": [ -0.172, -2.035, 3.717, -3.019, 16.686, 38.974 ], "heli_params": [ -4.556, -0.077, 2.673, 23.693, 4.287, 42.371 ], "bp2_params": [ -0.157, -0.075, -0.612, -25.745, -3.269, -1.430 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.717, "simple_Twist": 38.507, "simple_hRise": 2.657, "simple_hTwist": 41.945 }, { "index": 4, "nt1": "///2/611", "nt2": "///2/632", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 41, "helix_index": 19, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.294, "helical_rise_std": 0.002, "helical_radius": 11.006, "helical_radius_std": 1.249, "helical_axis": [ 0.129, -0.533, -0.836 ], "point1": [ 216.124, 201.330, 205.841 ], "point2": [ 216.547, 199.572, 203.087 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/617", "nt2": "///2/624", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.189, -0.131, 0.143, 0.286, 6.316, 0.537 ], "step_params": [ 0.548, -2.592, 3.394, -1.821, 1.413, 32.212 ], "heli_params": [ -4.915, -1.313, 3.245, 2.543, 3.276, 32.293 ], "bp2_params": [ 0.211, -0.134, 0.201, 4.108, 7.759, 3.869 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.394, "simple_Twist": 29.836, "simple_hRise": 3.232, "simple_hTwist": 29.923 }, { "index": 2, "nt1": "///2/618", "nt2": "///2/623", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 42, "helix_index": 21, "strand1": "UU", "strand2": "AA", "bp_type": "||", "helix_form": "A", "helical_rise": 3.427, "helical_rise_std": 0.011, "helical_radius": 8.594, "helical_radius_std": 0.459, "helical_axis": [ 0.913, -0.261, 0.314 ], "point1": [ 178.634, 199.418, 181.137 ], "point2": [ 181.761, 198.524, 182.214 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/666", "nt2": "///2/1145", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.083, -0.094, -0.365, -4.181, -6.837, -2.235 ], "step_params": [ -0.241, -0.921, 3.512, -0.614, 1.759, 36.848 ], "heli_params": [ -1.710, 0.293, 3.470, 2.781, 0.971, 36.894 ], "bp2_params": [ -0.075, -0.150, -0.466, -4.165, -5.205, 1.445 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.512, "simple_Twist": 36.865, "simple_hRise": 3.470, "simple_hTwist": 36.910 }, { "index": 2, "nt1": "///2/667", "nt2": "///2/1144", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 43, "helix_index": 31, "strand1": "UC", "strand2": "AG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.667, "helical_rise_std": 0.065, "helical_radius": 9.502, "helical_radius_std": 0.257, "helical_axis": [ -0.262, -0.941, -0.213 ], "point1": [ 192.295, 208.170, 154.920 ], "point2": [ 191.598, 205.667, 154.355 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/675", "nt2": "///2/1030", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.917, 0.111, -0.498, 5.503, 16.353, 5.021 ], "step_params": [ -0.177, -1.871, 3.415, 4.172, 9.854, 33.537 ], "heli_params": [ -4.514, 0.892, 2.733, 16.562, -7.011, 35.156 ], "bp2_params": [ -0.298, 0.214, -0.793, -1.148, -3.471, -0.337 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.415, "simple_Twist": 30.162, "simple_hRise": 2.641, "simple_hTwist": 31.963 }, { "index": 2, "nt1": "///2/676", "nt2": "///2/1029", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 44, "helix_index": 31, "strand1": "GUU", "strand2": "UAA", "bp_type": "|||", "helix_form": "..", "helical_rise": 2.415, "helical_rise_std": 0.192, "helical_radius": 8.431, "helical_radius_std": 1.113, "helical_axis": [ -0.032, -0.989, -0.143 ], "point1": [ 187.423, 195.426, 145.559 ], "point2": [ 187.269, 190.711, 144.878 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/680", "nt2": "///2/1025", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.360, 0.204, -1.610, -14.885, 3.871, -11.368 ], "step_params": [ 0.434, -1.063, 3.529, -6.941, 5.392, 35.725 ], "heli_params": [ -2.453, -1.677, 3.203, 8.630, 11.108, 36.756 ], "bp2_params": [ 1.224, 0.128, -1.098, -4.599, 12.213, -2.833 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.529, "simple_Twist": 22.736, "simple_hRise": 2.943, "simple_hTwist": 24.355 }, { "index": 2, "nt1": "///2/681", "nt2": "///2/1024", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.224, 0.128, -1.098, -4.599, 12.213, -2.833 ], "step_params": [ 1.323, -1.808, 3.131, -2.327, 15.772, 28.480 ], "heli_params": [ -5.445, -2.688, 1.797, 29.334, 4.329, 32.558 ], "bp2_params": [ 0.028, -0.100, -0.117, -0.392, -0.837, 5.597 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.131, "simple_Twist": 34.574, "simple_hRise": 2.053, "simple_hTwist": 37.971 }, { "index": 3, "nt1": "///2/682", "nt2": "///2/1023", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 45, "helix_index": 22, "strand1": "GGG", "strand2": "CCC", "bp_type": "|||", "helix_form": ".A", "helical_rise": 4.552, "helical_rise_std": 0.435, "helical_radius": 8.556, "helical_radius_std": 1.965, "helical_axis": [ -0.096, -0.982, 0.163 ], "point1": [ 168.890, 155.506, 141.669 ], "point2": [ 167.986, 146.282, 143.205 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/690", "nt2": "///2/736", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.192, -0.172, 0.200, -13.429, 7.335, 2.109 ], "step_params": [ -0.307, 0.196, 4.357, -1.527, 6.118, 19.522 ], "heli_params": [ -3.099, -0.050, 4.230, 17.463, 4.359, 20.506 ], "bp2_params": [ -0.123, -0.187, -0.507, -9.101, 17.892, -1.853 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.357, "simple_Twist": 19.269, "simple_hRise": 4.226, "simple_hTwist": 20.266 }, { "index": 2, "nt1": "///2/691", "nt2": "///2/735", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.123, -0.187, -0.507, -9.101, 17.892, -1.853 ], "step_params": [ -0.125, -1.314, 3.277, -3.370, 11.225, 26.435 ], "heli_params": [ -4.950, -0.445, 2.518, 23.154, 6.951, 28.874 ], "bp2_params": [ -0.211, -0.224, -0.418, 3.841, 27.786, -3.422 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.277, "simple_Twist": 26.300, "simple_hRise": 2.513, "simple_hTwist": 28.751 }, { "index": 3, "nt1": "///2/692", "nt2": "///2/734", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 46, "helix_index": 22, "strand1": "CG", "strand2": "GC", "bp_type": "||", "helix_form": ".", "helical_rise": 3.247, "helical_rise_std": 0.087, "helical_radius": 8.504, "helical_radius_std": 1.833, "helical_axis": [ -0.863, -0.502, 0.061 ], "point1": [ 169.684, 144.904, 150.344 ], "point2": [ 166.857, 143.260, 150.543 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/695", "nt2": "///2/731", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.651, -0.961, -1.869, 18.709, 0.139, -13.535 ], "step_params": [ 3.912, -2.202, 4.320, 14.249, 42.727, 25.466 ], "heli_params": [ -6.149, -3.305, 1.462, 58.821, -19.617, 51.413 ], "bp2_params": [ -0.201, 0.005, -0.233, -37.014, -3.712, 2.195 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.320, "simple_Twist": 29.770, "simple_hRise": 1.763, "simple_hTwist": 53.559 }, { "index": 2, "nt1": "///2/696", "nt2": "///2/730", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 47, "helix_index": 23, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 2.154, "helical_rise_std": 0.047, "helical_radius": 12.072, "helical_radius_std": 1.029, "helical_axis": [ -0.561, -0.459, -0.689 ], "point1": [ 187.628, 146.125, 130.958 ], "point2": [ 186.416, 145.134, 129.471 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/744", "nt2": "///2/797", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.144, -0.328, -1.395, -22.769, 21.220, -9.202 ], "step_params": [ 2.412, -1.990, 3.893, -7.690, 15.265, 20.928 ], "heli_params": [ -7.732, -6.917, 1.239, 35.371, 17.820, 26.961 ], "bp2_params": [ 0.418, -0.127, -0.207, -14.396, 33.474, 0.641 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.893, "simple_Twist": 19.339, "simple_hRise": 1.052, "simple_hTwist": 25.756 }, { "index": 2, "nt1": "///2/745", "nt2": "///2/796", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 48, "helix_index": 23, "strand1": "UC", "strand2": "AG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.790, "helical_rise_std": 0.062, "helical_radius": 9.091, "helical_radius_std": 1.873, "helical_axis": [ -0.219, -0.961, -0.169 ], "point1": [ 187.556, 147.447, 123.187 ], "point2": [ 186.725, 143.796, 122.545 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/749", "nt2": "///2/794", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.008, -0.080, 0.179, 2.577, -1.869, 5.761 ], "step_params": [ -1.405, -1.919, 3.480, 2.147, -1.696, 31.036 ], "heli_params": [ -3.229, 3.052, 3.474, -3.161, -4.003, 31.154 ], "bp2_params": [ 0.152, -0.273, -0.880, 1.026, 0.258, -0.511 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.480, "simple_Twist": 30.149, "simple_hRise": 3.474, "simple_hTwist": 30.270 }, { "index": 2, "nt1": "///2/750", "nt2": "///2/793", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 49, "helix_index": 23, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": "..", "helical_rise": 1.685, "helical_rise_std": 0.096, "helical_radius": 8.096, "helical_radius_std": 1.836, "helical_axis": [ -0.013, -0.997, 0.076 ], "point1": [ 183.900, 133.493, 116.226 ], "point2": [ 183.858, 130.156, 116.481 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/754", "nt2": "///2/790", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.005, -0.263, -1.038, -13.035, 18.535, -6.361 ], "step_params": [ 1.920, -1.817, 3.654, -2.934, 12.095, 21.041 ], "heli_params": [ -7.835, -5.399, 2.038, 29.976, 7.270, 24.410 ], "bp2_params": [ 0.186, -0.270, -0.629, -1.401, 30.065, -5.031 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.654, "simple_Twist": 19.572, "simple_hRise": 1.914, "simple_hTwist": 23.161 }, { "index": 2, "nt1": "///2/755", "nt2": "///2/789", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.186, -0.270, -0.629, -1.401, 30.065, -5.031 ], "step_params": [ 1.876, -1.191, 3.267, 12.014, 38.585, 39.524 ], "heli_params": [ -3.410, -1.334, 1.954, 45.283, -14.099, 55.941 ], "bp2_params": [ 0.189, -0.198, -0.682, -2.869, -2.363, 2.235 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.267, "simple_Twist": 39.298, "simple_hRise": 1.945, "simple_hTwist": 55.789 }, { "index": 3, "nt1": "///2/756", "nt2": "///2/788", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 50, "helix_index": 24, "strand1": "UUA", "strand2": "AAU", "bp_type": "|||", "helix_form": ".A", "helical_rise": 3.579, "helical_rise_std": 0.278, "helical_radius": 9.980, "helical_radius_std": 0.947, "helical_axis": [ 0.415, -0.659, 0.627 ], "point1": [ 182.423, 171.635, 138.746 ], "point2": [ 185.519, 166.725, 143.424 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/800", "nt2": "///2/865", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.800, 0.044, -1.491, 4.092, -18.376, -5.333 ], "step_params": [ 1.531, -1.988, 4.048, -8.614, 19.527, 31.461 ], "heli_params": [ -5.634, -3.494, 2.044, 31.840, 14.046, 37.865 ], "bp2_params": [ 0.015, -0.107, 0.344, -7.726, 18.630, 5.192 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.048, "simple_Twist": 22.074, "simple_hRise": 1.258, "simple_hTwist": 30.612 }, { "index": 2, "nt1": "///2/801", "nt2": "///2/864", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.015, -0.107, 0.344, -7.726, 18.630, 5.192 ], "step_params": [ 0.096, -1.541, 3.236, 3.050, 31.263, 36.682 ], "heli_params": [ -3.983, 0.085, 1.543, 41.587, -4.057, 47.938 ], "bp2_params": [ -0.005, -0.051, 0.078, -18.841, -10.938, -0.227 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.236, "simple_Twist": 36.079, "simple_hRise": 1.514, "simple_hTwist": 47.491 }, { "index": 3, "nt1": "///2/802", "nt2": "///2/863", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 51, "helix_index": 25, "strand1": "UA", "strand2": "AU", "bp_type": "||", "helix_form": ".", "helical_rise": 1.941, "helical_rise_std": 0.014, "helical_radius": 8.088, "helical_radius_std": 0.772, "helical_axis": [ 0.197, -0.338, 0.920 ], "point1": [ 212.619, 153.773, 165.102 ], "point2": [ 213.002, 153.118, 166.887 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/815", "nt2": "///2/849", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.076, -0.147, 0.662, 5.198, -0.561, 0.718 ], "step_params": [ -0.361, -1.479, 2.953, 7.471, 22.989, 40.358 ], "heli_params": [ -3.375, 0.947, 1.815, 30.272, -9.838, 46.783 ], "bp2_params": [ 0.028, -0.145, -0.698, -5.234, -21.898, 1.149 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.953, "simple_Twist": 39.665, "simple_hRise": 1.792, "simple_hTwist": 46.196 }, { "index": 2, "nt1": "///2/816", "nt2": "///2/848", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 52, "helix_index": 26, "strand1": "GU", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.632, "helical_rise_std": 0.005, "helical_radius": 9.574, "helical_radius_std": 1.151, "helical_axis": [ -0.063, -0.142, 0.988 ], "point1": [ 214.901, 149.381, 172.983 ], "point2": [ 214.674, 148.866, 176.571 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/819", "nt2": "///2/829", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.210, -0.194, 0.534, -9.334, -1.020, 1.093 ], "step_params": [ 0.297, -1.275, 3.794, -2.455, 3.258, 37.659 ], "heli_params": [ -2.441, -0.816, 3.650, 5.030, 3.790, 37.871 ], "bp2_params": [ 1.735, -0.154, 1.195, -8.511, 8.422, 4.911 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.794, "simple_Twist": 27.198, "simple_hRise": 3.580, "simple_hTwist": 27.497 }, { "index": 2, "nt1": "///2/820", "nt2": "///2/828", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 53, "helix_index": 26, "strand1": "GGC", "strand2": "CCG", "bp_type": "|||", "helix_form": "..", "helical_rise": 4.354, "helical_rise_std": 0.629, "helical_radius": 9.094, "helical_radius_std": 1.343, "helical_axis": [ 0.350, -0.883, 0.314 ], "point1": [ 220.633, 130.879, 169.300 ], "point2": [ 223.742, 123.035, 172.091 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/831", "nt2": "///2/843", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.174, -0.303, -1.016, 0.451, -3.969, 0.288 ], "step_params": [ 0.039, -0.993, 4.255, 1.993, -1.025, 33.739 ], "heli_params": [ -1.492, 0.353, 4.278, -1.763, -3.429, 33.811 ], "bp2_params": [ -0.221, -0.260, -0.799, 8.614, -9.667, 4.575 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.255, "simple_Twist": 34.399, "simple_hRise": 4.278, "simple_hTwist": 34.470 }, { "index": 2, "nt1": "///2/832", "nt2": "///2/842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.221, -0.260, -0.799, 8.614, -9.667, 4.575 ], "step_params": [ -0.822, -0.944, 3.211, 5.856, -3.471, 29.373 ], "heli_params": [ -1.125, 2.746, 3.082, -6.732, -11.357, 30.135 ], "bp2_params": [ -1.291, 0.243, -1.841, 16.189, -26.086, -23.447 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.211, "simple_Twist": 35.090, "simple_hRise": 3.114, "simple_hTwist": 35.724 }, { "index": 3, "nt1": "///2/833", "nt2": "///2/841", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 54, "helix_index": 27, "strand1": "CGGUUC", "strand2": "GUCAAG", "bp_type": "||||||", "helix_form": ".....", "helical_rise": 3.380, "helical_rise_std": 0.420, "helical_radius": 9.325, "helical_radius_std": 1.315, "helical_axis": [ 0.719, -0.448, -0.531 ], "point1": [ 180.085, 168.798, 105.269 ], "point2": [ 192.303, 161.195, 96.243 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/879", "nt2": "///2/907", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.177, -0.205, -0.552, 1.528, -0.924, -0.766 ], "step_params": [ 1.295, -0.985, 3.020, -3.813, 35.702, 41.102 ], "heli_params": [ -2.904, -1.619, 1.624, 42.465, 4.536, 54.060 ], "bp2_params": [ -1.402, -0.486, 0.361, -17.217, -23.450, 2.738 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.020, "simple_Twist": 49.051, "simple_hRise": 1.877, "simple_hTwist": 60.125 }, { "index": 2, "nt1": "///2/880", "nt2": "///2/906", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.402, -0.486, 0.361, -17.217, -23.450, 2.738 ], "step_params": [ -1.977, -2.515, 3.561, 3.120, 9.692, 20.515 ], "heli_params": [ -9.367, 5.958, 1.876, 25.301, -8.144, 22.879 ], "bp2_params": [ -0.097, -0.345, -1.245, -8.998, 1.173, -2.383 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.561, "simple_Twist": 14.034, "simple_hRise": 1.134, "simple_hTwist": 17.324 }, { "index": 3, "nt1": "///2/881", "nt2": "///2/905", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.097, -0.345, -1.245, -8.998, 1.173, -2.383 ], "step_params": [ -0.754, -1.438, 4.498, -5.128, 0.834, 31.786 ], "heli_params": [ -2.800, 0.090, 4.522, 1.510, 9.284, 32.197 ], "bp2_params": [ -0.254, -0.628, -1.656, -5.544, 7.553, -11.518 ], "groove_widths": [ 18.512, null, 18.246, null ], "simple_Rise": 4.498, "simple_Twist": 32.829, "simple_hRise": 4.523, "simple_hTwist": 33.227 }, { "index": 4, "nt1": "///2/882", "nt2": "///2/904", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.254, -0.628, -1.656, -5.544, 7.553, -11.518 ], "step_params": [ 0.197, -1.307, 3.861, -1.404, 3.288, 31.464 ], "heli_params": [ -3.100, -0.662, 3.697, 6.039, 2.578, 31.661 ], "bp2_params": [ -0.250, -0.340, -1.174, 2.491, 13.923, -8.545 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.861, "simple_Twist": 31.308, "simple_hRise": 3.696, "simple_hTwist": 31.507 }, { "index": 5, "nt1": "///2/883", "nt2": "///2/903", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.250, -0.340, -1.174, 2.491, 13.923, -8.545 ], "step_params": [ 1.436, -1.322, 4.121, 0.503, 4.151, 29.398 ], "heli_params": [ -3.659, -2.672, 3.924, 8.127, -0.985, 29.687 ], "bp2_params": [ 0.048, -0.195, -0.893, 17.937, 15.433, -3.561 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.121, "simple_Twist": 27.424, "simple_hRise": 3.907, "simple_hTwist": 27.735 }, { "index": 6, "nt1": "///2/884", "nt2": "///2/902", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 55, "helix_index": 29, "strand1": "GG", "strand2": "CU", "bp_type": "||", "helix_form": ".", "helical_rise": 0.968, "helical_rise_std": 0.071, "helical_axis": [ 0.186, 0.833, 0.521 ], "point1": [ null, null, null ], "point2": [ null, null, null ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/923", "nt2": "///2/1019", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.210, -0.145, 0.086, 3.224, 22.077, 1.135 ], "step_params": [ 0.279, -2.016, 3.207, 2.797, 26.659, 29.736 ], "heli_params": [ -5.327, -0.161, 1.116, 42.647, -4.474, 39.831 ], "bp2_params": [ -1.906, -0.430, -0.857, -6.292, -6.039, -1.413 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.207, "simple_Twist": 38.988, "simple_hRise": 1.601, "simple_hTwist": 47.017 }, { "index": 2, "nt1": "///2/924", "nt2": "///2/1018", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 56, "helix_index": 29, "strand1": "AC", "strand2": "UG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.345, "helical_rise_std": 0.005, "helical_radius": 9.972, "helical_radius_std": 2.243, "helical_axis": [ -0.284, 0.959, -0.025 ], "point1": [ 164.573, 203.766, 143.670 ], "point2": [ 163.625, 206.973, 143.587 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/926", "nt2": "///2/1015", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.296, 0.542, 0.652, -1.654, 2.798, -0.416 ], "step_params": [ 0.049, -1.555, 3.410, -2.810, 1.635, 38.866 ], "heli_params": [ -2.533, -0.423, 3.333, 2.452, 4.214, 38.996 ], "bp2_params": [ 0.176, -0.165, 0.613, 2.534, -0.142, 1.537 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.410, "simple_Twist": 26.327, "simple_hRise": 3.286, "simple_hTwist": 26.523 }, { "index": 2, "nt1": "///2/927", "nt2": "///2/1014", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 57, "helix_index": 29, "strand1": "GGCA", "strand2": "CCGU", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.444, "helical_rise_std": 0.115, "helical_radius": 9.114, "helical_radius_std": 0.337, "helical_axis": [ 0.418, 0.805, 0.422 ], "point1": [ 165.604, 226.376, 146.542 ], "point2": [ 168.639, 232.217, 149.602 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/935", "nt2": "///2/1007", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.160, -0.132, -0.123, -2.512, 7.271, -1.279 ], "step_params": [ 0.299, -1.824, 3.178, -1.296, 5.960, 34.879 ], "heli_params": [ -3.811, -0.668, 2.825, 9.850, 2.143, 35.392 ], "bp2_params": [ -0.178, -0.140, 0.280, 1.542, 6.532, 1.807 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.178, "simple_Twist": 35.269, "simple_hRise": 2.829, "simple_hTwist": 35.776 }, { "index": 2, "nt1": "///2/936", "nt2": "///2/1006", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.178, -0.140, 0.280, 1.542, 6.532, 1.807 ], "step_params": [ 0.377, -1.976, 3.311, 1.083, 2.299, 32.826 ], "heli_params": [ -3.875, -0.481, 3.180, 4.060, -1.913, 32.922 ], "bp2_params": [ 0.211, -0.180, 0.507, 3.677, 3.314, 1.872 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.311, "simple_Twist": 30.492, "simple_hRise": 3.168, "simple_hTwist": 30.595 }, { "index": 3, "nt1": "///2/937", "nt2": "///2/1005", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.211, -0.180, 0.507, 3.677, 3.314, 1.872 ], "step_params": [ 0.287, -1.869, 3.210, 11.417, 17.500, 31.977 ], "heli_params": [ -4.792, 0.815, 1.959, 28.307, -18.468, 38.049 ], "bp2_params": [ 0.110, -0.094, -0.625, -5.728, -1.352, 0.610 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.210, "simple_Twist": 32.578, "simple_hRise": 1.985, "simple_hTwist": 38.550 }, { "index": 4, "nt1": "///2/938", "nt2": "///2/1004", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 58, "helix_index": 29, "strand1": "CG", "strand2": "GC", "bp_type": "||", "helix_form": "A", "helical_rise": 3.528, "helical_rise_std": 0.014, "helical_radius": 8.951, "helical_radius_std": 0.828, "helical_axis": [ 0.133, 0.843, 0.521 ], "point1": [ 168.708, 241.168, 155.023 ], "point2": [ 169.178, 244.144, 156.860 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/941", "nt2": "///2/985", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.157, -0.432, -3.399, -3.243, 0.062 ], "step_params": [ 0.449, -0.938, 3.717, -0.310, 3.407, 32.343 ], "heli_params": [ -2.344, -0.863, 3.597, 6.095, 0.554, 32.519 ], "bp2_params": [ -0.235, -0.111, -0.519, -4.801, -5.939, 2.952 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.717, "simple_Twist": 34.476, "simple_hRise": 3.606, "simple_hTwist": 34.641 }, { "index": 2, "nt1": "///2/942", "nt2": "///2/984", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 59, "helix_index": 29, "strand1": "UUGCGCCG", "strand2": "AACGCGGC", "bp_type": "||||||||", "helix_form": "AAAAAAA", "helical_rise": 2.645, "helical_rise_std": 0.439, "helical_radius": 9.369, "helical_radius_std": 0.869, "helical_axis": [ 0.151, 0.840, 0.521 ], "point1": [ 168.487, 252.436, 161.857 ], "point2": [ 171.293, 268.056, 171.542 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///2/945", "nt2": "///2/981", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.076, -0.118, 0.657, -0.535, 4.865, -2.925 ], "step_params": [ 0.588, -1.434, 3.027, 0.142, 6.489, 33.633 ], "heli_params": [ -3.341, -0.979, 2.714, 11.087, -0.243, 34.235 ], "bp2_params": [ -0.053, -0.125, 0.523, 5.820, 7.542, 0.704 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.027, "simple_Twist": 33.324, "simple_hRise": 2.711, "simple_hTwist": 33.932 }, { "index": 2, "nt1": "///2/946", "nt2": "///2/980", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.053, -0.125, 0.523, 5.820, 7.542, 0.704 ], "step_params": [ 0.054, -1.438, 2.939, 6.674, 13.790, 32.009 ], "heli_params": [ -4.024, 0.713, 2.130, 23.406, -11.328, 35.400 ], "bp2_params": [ -0.208, -0.177, -0.555, 4.678, -6.334, 2.213 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.939, "simple_Twist": 32.984, "simple_hRise": 2.158, "simple_hTwist": 36.279 }, { "index": 3, "nt1": "///2/947", "nt2": "///2/979", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.208, -0.177, -0.555, 4.678, -6.334, 2.213 ], "step_params": [ -0.321, -1.618, 3.391, 2.971, -0.611, 29.476 ], "heli_params": [ -3.030, 1.279, 3.375, -1.197, -5.820, 29.629 ], "bp2_params": [ -0.746, 0.361, -1.234, 9.535, -13.040, -5.315 ], "groove_widths": [ 17.189, null, 17.146, null ], "simple_Rise": 3.391, "simple_Twist": 32.293, "simple_hRise": 3.378, "simple_hTwist": 32.432 }, { "index": 4, "nt1": "///2/948", "nt2": "///2/978", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.746, 0.361, -1.234, 9.535, -13.040, -5.315 ], "step_params": [ -0.003, -1.918, 3.489, -15.996, 22.403, 32.199 ], "heli_params": [ -4.778, -1.502, 1.700, 33.737, 24.089, 42.124 ], "bp2_params": [ -0.179, -0.182, 0.607, -4.305, 1.815, 1.290 ], "groove_widths": [ 17.757, 16.098, 17.075, 13.988 ], "simple_Rise": 3.489, "simple_Twist": 29.247, "simple_hRise": 1.527, "simple_hTwist": 39.957 }, { "index": 5, "nt1": "///2/949", "nt2": "///2/977", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.182, 0.607, -4.305, 1.815, 1.290 ], "step_params": [ -0.159, -1.770, 3.455, -1.944, 2.234, 32.615 ], "heli_params": [ -3.540, -0.066, 3.333, 3.968, 3.452, 32.745 ], "bp2_params": [ 0.200, -0.145, 0.408, -0.877, 6.062, 2.872 ], "groove_widths": [ 18.215, null, 16.334, null ], "simple_Rise": 3.455, "simple_Twist": 30.290, "simple_hRise": 3.322, "simple_hTwist": 30.431 }, { "index": 6, "nt1": "///2/950", "nt2": "///2/976", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.200, -0.145, 0.408, -0.877, 6.062, 2.872 ], "step_params": [ -0.100, -2.046, 3.063, -0.530, 8.509, 30.030 ], "heli_params": [ -5.185, 0.100, 2.408, 16.020, 0.999, 31.190 ], "bp2_params": [ 0.162, -0.187, 0.676, 1.171, -1.438, 1.184 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.063, "simple_Twist": 30.260, "simple_hRise": 2.414, "simple_hTwist": 31.411 }, { "index": 7, "nt1": "///2/951", "nt2": "///2/975", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.162, -0.187, 0.676, 1.171, -1.438, 1.184 ], "step_params": [ -0.222, -1.485, 2.491, 8.453, 12.886, 31.518 ], "heli_params": [ -3.772, 1.224, 1.665, 22.143, -14.525, 34.998 ], "bp2_params": [ -0.565, 0.734, -0.624, 19.981, 11.086, 5.837 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.491, "simple_Twist": 35.098, "simple_hRise": 1.761, "simple_hTwist": 38.235 }, { "index": 8, "nt1": "///2/952", "nt2": "///2/974", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 60, "helix_index": 28, "strand1": "GA", "strand2": "CU", "bp_type": "||", "helix_form": ".", "helical_rise": 2.307, "helical_rise_std": 0.094, "helical_radius": 9.322, "helical_radius_std": 0.910, "helical_axis": [ -0.478, -0.761, 0.440 ], "point1": [ 182.868, 264.235, 187.114 ], "point2": [ 181.767, 262.484, 188.127 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/956", "nt2": "///2/967", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.051, -0.345, -1.542, -20.200, 2.101, -1.538 ], "step_params": [ 0.282, -1.611, 3.624, -6.134, 19.778, 33.971 ], "heli_params": [ -4.650, -1.122, 2.301, 30.584, 9.485, 39.625 ], "bp2_params": [ 0.041, -0.005, -0.721, -27.766, -10.546, 1.567 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.624, "simple_Twist": 32.746, "simple_hRise": 2.245, "simple_hTwist": 38.592 }, { "index": 2, "nt1": "///2/957", "nt2": "///2/966", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 61, "helix_index": 30, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.567, "helical_rise_std": 0.010, "helical_radius": 9.391, "helical_radius_std": 0.317, "helical_axis": [ 0.453, -0.807, -0.378 ], "point1": [ 170.396, 220.166, 164.927 ], "point2": [ 172.010, 217.286, 163.578 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/993", "nt2": "///2/1000", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.180, -0.145, -0.336, -1.637, 0.477, -0.307 ], "step_params": [ -0.092, -1.517, 3.633, -0.740, 1.301, 31.638 ], "heli_params": [ -3.043, 0.018, 3.571, 2.385, 1.356, 31.673 ], "bp2_params": [ 0.188, -0.163, -0.450, 1.914, 0.508, 0.106 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.633, "simple_Twist": 29.528, "simple_hRise": 3.566, "simple_hTwist": 29.565 }, { "index": 2, "nt1": "///2/994", "nt2": "///2/999", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 62, "helix_index": 32, "strand1": "GUCGGA", "strand2": "CAGCCU", "bp_type": "||||||", "helix_form": ".A.AA", "helical_rise": 2.138, "helical_rise_std": 0.294, "helical_radius": 9.332, "helical_radius_std": 0.555, "helical_axis": [ 0.192, 0.961, 0.199 ], "point1": [ 189.826, 231.392, 154.852 ], "point2": [ 191.849, 241.532, 156.948 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/1037", "nt2": "///2/1078", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.173, -0.396, 1.671, 17.101, 9.300, 5.039 ], "step_params": [ -1.029, -2.973, 3.383, 6.106, 3.643, 26.235 ], "heli_params": [ -7.190, 3.633, 2.650, 7.845, -13.148, 27.165 ], "bp2_params": [ 0.022, -0.181, 0.569, 13.409, 4.211, 5.357 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.383, "simple_Twist": 25.120, "simple_hRise": 2.614, "simple_hTwist": 26.091 }, { "index": 2, "nt1": "///2/1038", "nt2": "///2/1077", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.022, -0.181, 0.569, 13.409, 4.211, 5.357 ], "step_params": [ -0.777, -1.833, 3.099, 8.699, 6.304, 38.726 ], "heli_params": [ -3.304, 2.006, 2.555, 9.290, -12.820, 40.133 ], "bp2_params": [ 0.830, -0.452, -0.499, 9.635, -15.310, -6.619 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.099, "simple_Twist": 34.813, "simple_hRise": 2.481, "simple_hTwist": 36.384 }, { "index": 3, "nt1": "///2/1039", "nt2": "///2/1076", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.830, -0.452, -0.499, 9.635, -15.310, -6.619 ], "step_params": [ -0.756, -2.247, 3.711, -3.334, 29.601, 22.727 ], "heli_params": [ -6.772, 0.815, 0.593, 53.132, 5.985, 37.311 ], "bp2_params": [ -0.161, -0.126, -0.483, -7.607, 2.282, 0.009 ], "groove_widths": [ 18.012, null, 17.000, null ], "simple_Rise": 3.711, "simple_Twist": 27.826, "simple_hRise": 1.028, "simple_hTwist": 40.546 }, { "index": 4, "nt1": "///2/1040", "nt2": "///2/1075", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.161, -0.126, -0.483, -7.607, 2.282, 0.009 ], "step_params": [ -0.137, -1.728, 3.123, -1.251, 5.353, 29.547 ], "heli_params": [ -4.332, 0.031, 2.777, 10.383, 2.425, 30.043 ], "bp2_params": [ -0.165, -0.217, -0.716, -0.213, 8.196, -1.866 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.123, "simple_Twist": 29.315, "simple_hRise": 2.774, "simple_hTwist": 29.815 }, { "index": 5, "nt1": "///2/1041", "nt2": "///2/1074", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.217, -0.716, -0.213, 8.196, -1.866 ], "step_params": [ 0.318, -1.440, 3.163, 1.331, 10.990, 34.600 ], "heli_params": [ -3.706, -0.342, 2.610, 17.918, -2.170, 36.276 ], "bp2_params": [ 0.217, 0.215, -0.586, 9.182, 0.671, 11.273 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.163, "simple_Twist": 32.582, "simple_hRise": 2.568, "simple_hTwist": 34.363 }, { "index": 6, "nt1": "///2/1042", "nt2": "///2/1073", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 63, "helix_index": 33, "strand1": "GACG", "strand2": "CUGC", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.026, "helical_rise_std": 0.117, "helical_radius": 9.012, "helical_radius_std": 0.424, "helical_axis": [ 0.623, 0.131, 0.771 ], "point1": [ 190.791, 244.723, 179.340 ], "point2": [ 194.526, 245.511, 183.957 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1051", "nt2": "///2/1067", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.150, -0.144, -0.392, -0.956, -1.108, -0.106 ], "step_params": [ -0.334, -1.864, 3.107, -5.341, 9.786, 31.733 ], "heli_params": [ -4.631, -0.190, 2.463, 17.244, 9.412, 33.587 ], "bp2_params": [ 0.056, -0.084, 0.096, -0.039, 7.233, 1.397 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.107, "simple_Twist": 30.389, "simple_hRise": 2.429, "simple_hTwist": 32.324 }, { "index": 2, "nt1": "///2/1052", "nt2": "///2/1066", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.056, -0.084, 0.096, -0.039, 7.233, 1.397 ], "step_params": [ 0.929, -2.120, 3.275, -1.634, 4.075, 30.796 ], "heli_params": [ -4.697, -2.031, 2.925, 7.625, 3.057, 31.100 ], "bp2_params": [ 0.214, -0.181, 0.642, 4.444, 4.310, 3.955 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.275, "simple_Twist": 29.787, "simple_hRise": 2.911, "simple_hTwist": 30.101 }, { "index": 3, "nt1": "///2/1053", "nt2": "///2/1065", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.214, -0.181, 0.642, 4.444, 4.310, 3.955 ], "step_params": [ -0.361, -1.860, 3.158, 12.187, 20.815, 32.721 ], "heli_params": [ -4.562, 1.618, 1.536, 32.085, -18.786, 40.453 ], "bp2_params": [ -0.167, -0.216, -0.866, -2.508, -1.395, 1.480 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.158, "simple_Twist": 34.917, "simple_hRise": 1.641, "simple_hTwist": 42.224 }, { "index": 4, "nt1": "///2/1054", "nt2": "///2/1064", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 64, "helix_index": 20, "strand1": "GCC", "strand2": "UGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.869, "helical_rise_std": 0.195, "helical_radius": 9.428, "helical_radius_std": 0.276, "helical_axis": [ -0.984, 0.171, -0.038 ], "point1": [ 183.899, 192.383, 165.490 ], "point2": [ 178.241, 193.369, 165.273 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1089", "nt2": "///2/1160", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.043, 0.383, -0.008, -11.638, 7.071, 6.498 ], "step_params": [ -0.594, -1.531, 3.408, -1.569, 1.768, 30.362 ], "heli_params": [ -3.279, 0.806, 3.341, 3.369, 2.990, 30.451 ], "bp2_params": [ 0.212, -0.134, -0.140, -1.907, 10.646, 0.739 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.408, "simple_Twist": 23.537, "simple_hRise": 3.317, "simple_hTwist": 23.654 }, { "index": 2, "nt1": "///2/1090", "nt2": "///2/1159", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.212, -0.134, -0.140, -1.907, 10.646, 0.739 ], "step_params": [ 0.279, -2.070, 3.019, -1.018, 11.772, 32.327 ], "heli_params": [ -5.005, -0.603, 2.147, 20.315, 1.757, 34.365 ], "bp2_params": [ 0.193, -0.138, 0.308, 2.365, 1.481, 1.043 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.019, "simple_Twist": 32.361, "simple_hRise": 2.148, "simple_hTwist": 34.397 }, { "index": 3, "nt1": "///2/1091", "nt2": "///2/1158", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 65, "helix_index": 20, "strand1": "AC", "strand2": "UG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.553, "helical_rise_std": 0.001, "helical_radius": 9.310, "helical_radius_std": 0.549, "helical_axis": [ -0.786, 0.473, 0.399 ], "point1": [ 173.676, 190.664, 165.473 ], "point2": [ 170.885, 192.344, 166.890 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1093", "nt2": "///2/1152", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.095, -0.098, 0.427, 2.386, -11.010, 0.133 ], "step_params": [ 0.047, -1.539, 3.575, -0.516, -2.055, 38.826 ], "heli_params": [ -2.036, -0.141, 3.647, -3.089, 0.776, 38.881 ], "bp2_params": [ 0.193, -0.143, 0.046, -1.990, -14.603, -0.424 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.575, "simple_Twist": 38.312, "simple_hRise": 3.648, "simple_hTwist": 38.368 }, { "index": 2, "nt1": "///2/1094", "nt2": "///2/1151", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 66, "helix_index": 34, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.165, "helical_rise_std": 0.011, "helical_radius": 9.381, "helical_radius_std": 0.328, "helical_axis": [ -0.615, 0.350, -0.706 ], "point1": [ 162.307, 199.491, 173.115 ], "point2": [ 160.359, 200.600, 170.880 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1097", "nt2": "///2/1135", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.153, -0.184, 0.664, 2.476, 3.733, 1.729 ], "step_params": [ 0.476, -2.076, 3.273, 2.827, 2.612, 36.990 ], "heli_params": [ -3.598, -0.376, 3.151, 4.104, -4.441, 37.183 ], "bp2_params": [ 0.176, -0.165, 0.598, 0.188, -0.130, 1.003 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.273, "simple_Twist": 34.977, "simple_hRise": 3.142, "simple_hTwist": 35.182 }, { "index": 2, "nt1": "///2/1098", "nt2": "///2/1134", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 67, "helix_index": 34, "strand1": "CGGCGG", "strand2": "GCCGCC", "bp_type": "||||||", "helix_form": "AA...", "helical_rise": 2.674, "helical_rise_std": 0.447, "helical_radius": 9.740, "helical_radius_std": 0.603, "helical_axis": [ -0.802, 0.342, -0.489 ], "point1": [ 153.950, 206.358, 162.786 ], "point2": [ 143.202, 210.936, 156.232 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///2/1103", "nt2": "///2/1129", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.135, -0.419, -1.330, -8.844, -1.733, 1.793 ], "step_params": [ 0.337, -0.795, 3.221, -11.499, 28.881, 28.954 ], "heli_params": [ -3.753, -1.522, 1.613, 44.642, 17.775, 42.237 ], "bp2_params": [ -0.201, -0.116, -0.054, -4.923, -6.771, 1.744 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.221, "simple_Twist": 30.867, "simple_hRise": 1.710, "simple_hTwist": 43.537 }, { "index": 2, "nt1": "///2/1104", "nt2": "///2/1128", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.201, -0.116, -0.054, -4.923, -6.771, 1.744 ], "step_params": [ -0.178, -1.648, 3.360, -0.539, 4.529, 29.395 ], "heli_params": [ -4.151, 0.235, 3.080, 8.858, 1.054, 29.739 ], "bp2_params": [ -0.159, -0.181, -0.700, -2.971, -0.451, 0.761 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.360, "simple_Twist": 29.324, "simple_hRise": 3.079, "simple_hTwist": 29.669 }, { "index": 3, "nt1": "///2/1105", "nt2": "///2/1127", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.181, -0.700, -2.971, -0.451, 0.761 ], "step_params": [ -0.035, -1.635, 3.327, -1.798, 1.961, 41.596 ], "heli_params": [ -2.507, -0.142, 3.249, 2.758, 2.529, 41.677 ], "bp2_params": [ 1.926, -0.429, -0.150, 0.903, 0.686, -1.451 ], "groove_widths": [ 17.405, null, 18.718, null ], "simple_Rise": 3.327, "simple_Twist": 30.171, "simple_hRise": 3.214, "simple_hTwist": 30.285 }, { "index": 4, "nt1": "///2/1106", "nt2": "///2/1126", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.926, -0.429, -0.150, 0.903, 0.686, -1.451 ], "step_params": [ -0.838, -2.478, 3.327, 1.193, 21.440, 15.677 ], "heli_params": [ -8.996, 2.025, -0.050, 54.190, -3.014, 26.533 ], "bp2_params": [ -0.191, -0.136, -0.398, -4.251, -5.905, 1.790 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.327, "simple_Twist": 27.241, "simple_hRise": 1.101, "simple_hTwist": 34.561 }, { "index": 5, "nt1": "///2/1107", "nt2": "///2/1125", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.191, -0.136, -0.398, -4.251, -5.905, 1.790 ], "step_params": [ 0.774, -1.491, 3.611, -0.291, 0.905, 34.994 ], "heli_params": [ -2.628, -1.335, 3.566, 1.504, 0.484, 35.006 ], "bp2_params": [ 0.565, 0.628, -0.290, -7.302, -4.471, 11.004 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.611, "simple_Twist": 30.927, "simple_hRise": 3.560, "simple_hTwist": 30.941 }, { "index": 6, "nt1": "///2/1108", "nt2": "///2/1124", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 68, "helix_index": 34, "strand1": "GU", "strand2": "CA", "bp_type": "||", "helix_form": ".", "helical_rise": 2.669, "helical_rise_std": 0.037, "helical_radius": 10.191, "helical_radius_std": 1.428, "helical_axis": [ -0.711, 0.521, -0.472 ], "point1": [ 140.188, 212.165, 154.336 ], "point2": [ 138.287, 213.557, 153.074 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1110", "nt2": "///2/1123", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.476, -0.461, 1.234, 7.490, 17.175, 15.858 ], "step_params": [ -1.028, -2.387, 3.479, 11.548, 11.862, 38.344 ], "heli_params": [ -4.513, 2.571, 2.286, 17.120, -16.667, 41.642 ], "bp2_params": [ -0.078, -0.117, -0.340, 0.374, 6.952, 0.602 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.479, "simple_Twist": 30.001, "simple_hRise": 1.916, "simple_hTwist": 34.174 }, { "index": 2, "nt1": "///2/1111", "nt2": "///2/1122", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 69, "helix_index": 34, "strand1": "CCC", "strand2": "GGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.254, "helical_rise_std": 0.635, "helical_radius": 9.935, "helical_radius_std": 0.514, "helical_axis": [ 0.481, -0.674, 0.560 ], "point1": [ 130.138, 224.996, 147.496 ], "point2": [ 132.306, 221.958, 150.018 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1116", "nt2": "///z/268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.204, -0.095, -0.139, 3.894, -2.280, 2.672 ], "step_params": [ -0.320, -1.918, 3.196, 1.906, 2.192, 32.175 ], "heli_params": [ -3.818, 0.898, 3.039, 3.946, -3.431, 32.302 ], "bp2_params": [ 0.194, -0.138, -0.450, 2.676, -1.391, 0.124 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.196, "simple_Twist": 32.420, "simple_hRise": 3.040, "simple_hTwist": 32.546 }, { "index": 2, "nt1": "///2/1117", "nt2": "///z/267", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.194, -0.138, -0.450, 2.676, -1.391, 0.124 ], "step_params": [ -0.552, -1.595, 3.111, 2.138, 20.553, 23.021 ], "heli_params": [ -6.078, 1.357, 1.248, 42.187, -4.388, 30.842 ], "bp2_params": [ 0.065, -0.165, -0.581, 10.113, 13.850, -3.061 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.111, "simple_Twist": 23.128, "simple_hRise": 1.256, "simple_hTwist": 30.920 }, { "index": 3, "nt1": "///2/1118", "nt2": "///z/266", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 70, "helix_index": 34, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": "A", "helical_rise": 3.582, "helical_rise_std": 0.016, "helical_radius": 9.866, "helical_radius_std": 0.940, "helical_axis": [ 0.691, -0.285, 0.664 ], "point1": [ 166.933, 194.700, 183.449 ], "point2": [ 169.409, 193.680, 185.829 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1140", "nt2": "///2/1147", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.108, -0.318, -1.065, -4.266, 6.684, -2.797 ], "step_params": [ 0.584, -1.603, 3.742, -0.530, 3.209, 26.036 ], "heli_params": [ -4.495, -1.445, 3.510, 7.087, 1.170, 26.235 ], "bp2_params": [ -0.148, -0.185, -0.625, 0.665, 10.635, -1.146 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.742, "simple_Twist": 26.328, "simple_hRise": 3.513, "simple_hTwist": 26.524 }, { "index": 2, "nt1": "///2/1141", "nt2": "///2/1146", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 71, "helix_index": 35, "strand1": "GGG", "strand2": "UUC", "bp_type": "|||", "helix_form": "..", "helical_rise": 1.840, "helical_rise_std": 0.127, "helical_radius": 9.129, "helical_radius_std": 1.002, "helical_axis": [ -0.381, 0.534, -0.755 ], "point1": [ 211.193, 198.568, 182.469 ], "point2": [ 209.872, 200.422, 179.850 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1166", "nt2": "///2/1193", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.878, -0.116, -0.148, -10.460, -5.601, 0.975 ], "step_params": [ 0.440, -1.793, 3.549, -1.353, 1.163, 26.664 ], "heli_params": [ -4.203, -1.328, 3.443, 2.518, 2.930, 26.723 ], "bp2_params": [ -2.313, 0.238, -0.481, -10.294, -2.243, 9.047 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.549, "simple_Twist": 34.509, "simple_hRise": 3.470, "simple_hTwist": 34.553 }, { "index": 2, "nt1": "///2/1167", "nt2": "///2/1192", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.313, 0.238, -0.481, -10.294, -2.243, 9.047 ], "step_params": [ 0.363, -1.951, 3.097, 3.580, 5.732, 34.223 ], "heli_params": [ -4.044, -0.115, 2.767, 9.624, -6.011, 34.864 ], "bp2_params": [ -0.128, -0.179, -0.573, 2.610, 3.832, -1.229 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.097, "simple_Twist": 22.849, "simple_hRise": 2.563, "simple_hTwist": 23.815 }, { "index": 3, "nt1": "///2/1168", "nt2": "///2/1191", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 72, "helix_index": 35, "strand1": "GGUU", "strand2": "UCGA", "bp_type": "||||", "helix_form": "A..", "helical_rise": 1.990, "helical_rise_std": 0.252, "helical_radius": 9.189, "helical_radius_std": 0.812, "helical_axis": [ 0.351, 0.551, -0.757 ], "point1": [ 209.014, 216.781, 165.141 ], "point2": [ 211.029, 219.942, 160.796 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1175", "nt2": "///2/1186", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.806, -0.159, -0.099, -4.485, 5.980, 5.823 ], "step_params": [ -0.138, -1.474, 3.482, -1.003, 1.303, 32.563 ], "heli_params": [ -2.866, 0.061, 3.425, 2.321, 1.787, 32.604 ], "bp2_params": [ -0.167, -0.123, -0.070, 0.448, 4.869, 0.886 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.482, "simple_Twist": 23.641, "simple_hRise": 3.400, "simple_hTwist": 23.698 }, { "index": 2, "nt1": "///2/1176", "nt2": "///2/1185", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.123, -0.070, 0.448, 4.869, 0.886 ], "step_params": [ 1.558, -1.373, 3.325, 0.274, 2.059, 42.831 ], "heli_params": [ -2.084, -2.104, 3.268, 2.817, -0.374, 42.879 ], "bp2_params": [ 2.453, -0.055, 0.174, 4.287, 2.575, 14.846 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.325, "simple_Twist": 27.997, "simple_hRise": 3.232, "simple_hTwist": 28.073 }, { "index": 3, "nt1": "///2/1177", "nt2": "///2/1184", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.453, -0.055, 0.174, 4.287, 2.575, 14.846 ], "step_params": [ -0.028, -1.898, 2.818, 21.604, 19.916, 20.984 ], "heli_params": [ -4.983, 2.116, 0.606, 37.427, -40.600, 35.973 ], "bp2_params": [ -0.258, 0.333, -1.529, -1.263, -6.439, 12.080 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.818, "simple_Twist": 36.182, "simple_hRise": 1.425, "simple_hTwist": 46.298 }, { "index": 4, "nt1": "///2/1178", "nt2": "///2/1183", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 73, "helix_index": 36, "strand1": "AAGGGCA", "strand2": "UUCCCGU", "bp_type": "|||||||", "helix_form": "AAAAA.", "helical_rise": 3.145, "helical_rise_std": 0.248, "helical_radius": 9.789, "helical_radius_std": 0.699, "helical_axis": [ -0.594, 0.609, 0.526 ], "point1": [ 176.269, 218.581, 203.786 ], "point2": [ 164.957, 230.185, 213.806 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///2/1208", "nt2": "///2/1691", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.038, -0.142, -0.567, -1.964, -3.975, 2.267 ], "step_params": [ -0.397, -1.464, 3.427, -2.538, 3.328, 32.524 ], "heli_params": [ -3.183, 0.254, 3.286, 5.911, 4.509, 32.785 ], "bp2_params": [ 0.471, -0.169, 0.055, -4.814, -2.724, -5.580 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.427, "simple_Twist": 30.274, "simple_hRise": 3.273, "simple_hTwist": 30.555 }, { "index": 2, "nt1": "///2/1209", "nt2": "///2/1690", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.471, -0.169, 0.055, -4.814, -2.724, -5.580 ], "step_params": [ 1.021, -1.863, 3.118, 3.395, 3.825, 35.013 ], "heli_params": [ -3.595, -1.211, 2.987, 6.316, -5.606, 35.373 ], "bp2_params": [ 1.132, 0.486, 0.312, -3.037, -1.224, 1.526 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.118, "simple_Twist": 32.120, "simple_hRise": 2.972, "simple_hTwist": 32.514 }, { "index": 3, "nt1": "///2/1210", "nt2": "///2/1689", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.132, 0.486, 0.312, -3.037, -1.224, 1.526 ], "step_params": [ 0.410, -2.337, 2.988, 0.838, 7.654, 25.400 ], "heli_params": [ -6.738, -0.713, 2.213, 16.917, -1.852, 26.523 ], "bp2_params": [ -0.203, -0.142, 0.332, 0.711, 8.298, 1.029 ], "groove_widths": [ 17.453, null, 16.751, null ], "simple_Rise": 2.988, "simple_Twist": 31.857, "simple_hRise": 2.387, "simple_hTwist": 32.751 }, { "index": 4, "nt1": "///2/1211", "nt2": "///2/1688", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.203, -0.142, 0.332, 0.711, 8.298, 1.029 ], "step_params": [ -0.245, -1.853, 3.411, 7.078, 14.498, 34.194 ], "heli_params": [ -4.613, 1.231, 2.367, 23.129, -11.292, 37.706 ], "bp2_params": [ -0.186, -0.169, -0.703, -8.582, -4.409, 0.979 ], "groove_widths": [ 17.523, null, 19.701, null ], "simple_Rise": 3.411, "simple_Twist": 34.090, "simple_hRise": 2.364, "simple_hTwist": 37.612 }, { "index": 5, "nt1": "///2/1212", "nt2": "///2/1687", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.186, -0.169, -0.703, -8.582, -4.409, 0.979 ], "step_params": [ -0.489, -1.112, 3.479, -2.804, 1.806, 32.031 ], "heli_params": [ -2.346, 0.352, 3.442, 3.261, 5.064, 32.200 ], "bp2_params": [ 0.147, -0.168, -0.501, -4.173, 1.167, -1.248 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.479, "simple_Twist": 30.221, "simple_hRise": 3.439, "simple_hTwist": 30.400 }, { "index": 6, "nt1": "///2/1213", "nt2": "///2/1686", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.147, -0.168, -0.501, -4.173, 1.167, -1.248 ], "step_params": [ -1.374, -1.470, 3.013, -7.645, 11.942, 29.997 ], "heli_params": [ -4.374, 1.262, 2.529, 21.618, 13.840, 33.110 ], "bp2_params": [ 0.637, 0.294, 0.238, 8.706, -16.277, -11.235 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.013, "simple_Twist": 27.899, "simple_hRise": 2.477, "simple_hTwist": 31.232 }, { "index": 7, "nt1": "///2/1214", "nt2": "///2/1685", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 74, "helix_index": 37, "strand1": "AC", "strand2": "UG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.768, "helical_rise_std": 0.027, "helical_radius": 10.250, "helical_radius_std": 1.494, "helical_axis": [ -0.479, 0.734, 0.481 ], "point1": [ 161.529, 228.813, 219.802 ], "point2": [ 159.722, 231.581, 221.614 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1217", "nt2": "///2/1681", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.052, -0.092, 0.282, -2.432, -10.988, -1.579 ], "step_params": [ -0.397, -1.320, 3.694, -1.369, -2.589, 33.008 ], "heli_params": [ -1.815, 0.432, 3.796, -4.546, 2.404, 33.134 ], "bp2_params": [ 0.152, -0.132, -0.109, -5.525, -9.391, 0.010 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.694, "simple_Twist": 32.335, "simple_hRise": 3.798, "simple_hTwist": 32.464 }, { "index": 2, "nt1": "///2/1218", "nt2": "///2/1680", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 75, "helix_index": 37, "strand1": "GGAGU", "strand2": "CCUUA", "bp_type": "|||||", "helix_form": "AA.A", "helical_rise": 3.386, "helical_rise_std": 0.278, "helical_radius": 9.387, "helical_radius_std": 1.359, "helical_axis": [ 0.542, 0.784, 0.303 ], "point1": [ 163.335, 237.897, 225.824 ], "point2": [ 170.698, 248.535, 229.935 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/1221", "nt2": "///2/1645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.577, -0.548, 0.043, -8.647, -0.152, -0.655 ], "step_params": [ -0.773, -1.198, 3.547, 1.016, 1.849, 33.930 ], "heli_params": [ -2.365, 1.496, 3.455, 3.165, -1.738, 33.993 ], "bp2_params": [ -0.159, -0.190, -0.571, -2.818, 4.296, -1.010 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.547, "simple_Twist": 31.620, "simple_hRise": 3.447, "simple_hTwist": 31.689 }, { "index": 2, "nt1": "///2/1222", "nt2": "///2/1644", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.190, -0.571, -2.818, 4.296, -1.010 ], "step_params": [ 0.554, -1.311, 3.418, -1.678, 3.419, 31.202 ], "heli_params": [ -3.073, -1.344, 3.226, 6.327, 3.104, 31.428 ], "bp2_params": [ 0.088, -0.064, 0.066, 3.085, 2.957, -0.737 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.418, "simple_Twist": 29.917, "simple_hRise": 3.217, "simple_hTwist": 30.153 }, { "index": 3, "nt1": "///2/1223", "nt2": "///2/1643", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.088, -0.064, 0.066, 3.085, 2.957, -0.737 ], "step_params": [ 2.688, -2.776, 3.124, -0.513, 2.010, 12.895 ], "heli_params": [ -14.132, -12.309, 2.554, 8.874, 2.264, 13.060 ], "bp2_params": [ -1.401, -0.418, 0.380, 1.908, 1.821, 3.915 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.124, "simple_Twist": 21.114, "simple_hRise": 2.785, "simple_hTwist": 21.215 }, { "index": 4, "nt1": "///2/1224", "nt2": "///2/1642", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.401, -0.418, 0.380, 1.908, 1.821, 3.915 ], "step_params": [ -0.474, -1.949, 3.364, -0.176, 0.104, 37.860 ], "heli_params": [ -3.018, 0.708, 3.361, 0.160, 0.271, 37.860 ], "bp2_params": [ -0.051, -0.108, 0.128, 0.620, 2.000, 2.656 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.364, "simple_Twist": 30.241, "simple_hRise": 3.361, "simple_hTwist": 30.241 }, { "index": 5, "nt1": "///2/1225", "nt2": "///2/1641", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 76, "helix_index": 38, "strand1": "AGC", "strand2": "UCG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.413, "helical_rise_std": 0.228, "helical_radius": 8.571, "helical_radius_std": 0.750, "helical_axis": [ 0.989, -0.146, -0.014 ], "point1": [ 175.630, 248.767, 239.880 ], "point2": [ 180.222, 248.089, 239.815 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1228", "nt2": "///2/1530", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.059, -0.120, 0.624, 0.953, -2.152, -2.077 ], "step_params": [ -0.617, -1.690, 3.534, -1.563, 2.344, 32.207 ], "heli_params": [ -3.478, 0.813, 3.431, 4.216, 2.811, 32.327 ], "bp2_params": [ -0.190, -0.157, -0.193, -0.607, -2.000, 0.098 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.534, "simple_Twist": 33.755, "simple_hRise": 3.436, "simple_hTwist": 33.869 }, { "index": 2, "nt1": "///2/1229", "nt2": "///2/1529", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.190, -0.157, -0.193, -0.607, -2.000, 0.098 ], "step_params": [ 0.489, -1.409, 3.118, -0.229, 1.741, 38.842 ], "heli_params": [ -2.316, -0.761, 3.052, 2.616, 0.344, 38.880 ], "bp2_params": [ 0.187, -0.122, -0.090, 2.470, -2.944, 0.397 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.118, "simple_Twist": 36.806, "simple_hRise": 3.048, "simple_hTwist": 36.847 }, { "index": 3, "nt1": "///2/1230", "nt2": "///2/1528", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 77, "helix_index": 38, "strand1": "GCG", "strand2": "CGC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.434, "helical_rise_std": 0.128, "helical_radius": 8.965, "helical_radius_std": 1.183, "helical_axis": [ 0.937, -0.342, 0.069 ], "point1": [ 190.660, 245.697, 240.694 ], "point2": [ 195.078, 244.083, 241.018 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1233", "nt2": "///2/1525", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.170, -0.229, -0.776, -8.406, -1.607, -1.740 ], "step_params": [ -0.358, -1.568, 3.483, -3.973, 3.310, 28.271 ], "heli_params": [ -3.938, -0.213, 3.300, 6.705, 8.049, 28.731 ], "bp2_params": [ 0.147, -0.311, -1.068, -0.061, 0.692, -0.780 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.483, "simple_Twist": 26.802, "simple_hRise": 3.287, "simple_hTwist": 27.287 }, { "index": 2, "nt1": "///2/1234", "nt2": "///2/1524", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.147, -0.311, -1.068, -0.061, 0.692, -0.780 ], "step_params": [ 0.607, -1.621, 3.784, -6.362, 6.397, 32.454 ], "heli_params": [ -3.943, -2.185, 3.242, 11.179, 11.118, 33.653 ], "bp2_params": [ -0.133, -0.149, -0.467, -6.813, 10.444, -0.413 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.784, "simple_Twist": 34.256, "simple_hRise": 3.277, "simple_hTwist": 35.390 }, { "index": 3, "nt1": "///2/1235", "nt2": "///2/1523", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 78, "helix_index": 38, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.346, "helical_rise_std": 0.018, "helical_radius": 8.040, "helical_radius_std": 1.350, "helical_axis": [ 0.975, -0.181, 0.127 ], "point1": [ 198.499, 242.926, 239.570 ], "point2": [ 201.761, 242.319, 239.996 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1236", "nt2": "///2/1521", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.189, -0.166, -0.552, -6.293, -4.896, 1.025 ], "step_params": [ 0.823, -1.029, 3.126, -8.262, 0.273, 50.542 ], "heli_params": [ -1.209, -1.488, 2.961, 0.318, 9.603, 51.169 ], "bp2_params": [ 0.179, -0.157, 0.311, 7.022, -0.271, -0.952 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.126, "simple_Twist": 48.975, "simple_hRise": 2.954, "simple_hTwist": 49.625 }, { "index": 2, "nt1": "///2/1237", "nt2": "///2/1520", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 79, "helix_index": 40, "strand1": "CCC", "strand2": "GGG", "bp_type": "|||", "helix_form": "..", "helical_rise": 3.519, "helical_rise_std": 0.141, "helical_radius": 9.392, "helical_radius_std": 0.414, "helical_axis": [ 0.900, -0.343, 0.269 ], "point1": [ 204.309, 232.503, 256.110 ], "point2": [ 210.803, 230.031, 258.049 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1266", "nt2": "///2/1516", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.164, -0.150, -0.166, 3.143, 9.633, -0.105 ], "step_params": [ -1.857, -1.878, 3.005, 1.485, 5.358, 36.026 ], "heli_params": [ -3.648, 3.148, 2.631, 8.601, -2.384, 36.438 ], "bp2_params": [ 0.383, -0.095, -0.503, 15.240, 9.781, -23.269 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.005, "simple_Twist": 34.808, "simple_hRise": 2.617, "simple_hTwist": 35.236 }, { "index": 2, "nt1": "///2/1267", "nt2": "///2/1515", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.383, -0.095, -0.503, 15.240, 9.781, -23.269 ], "step_params": [ 0.410, -2.209, 3.167, 0.276, 7.952, 18.396 ], "heli_params": [ -9.426, -1.073, 2.047, 23.499, -0.815, 20.030 ], "bp2_params": [ -0.982, 0.585, -0.970, 23.271, -5.447, -0.603 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.167, "simple_Twist": 25.820, "simple_hRise": 2.395, "simple_hTwist": 26.998 }, { "index": 3, "nt1": "///2/1268", "nt2": "///2/1514", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 80, "helix_index": 43, "strand1": "CACGG", "strand2": "GUGCC", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.298, "helical_rise_std": 0.254, "helical_radius": 8.205, "helical_radius_std": 0.455, "helical_axis": [ 0.450, -0.526, 0.721 ], "point1": [ 223.417, 204.096, 256.028 ], "point2": [ 227.468, 199.363, 262.514 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/1277", "nt2": "///2/1320", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.175, -0.176, -0.503, 0.175, -3.150, 0.826 ], "step_params": [ -1.383, -1.412, 3.814, -7.379, 5.760, 32.013 ], "heli_params": [ -3.592, 0.966, 3.729, 10.176, 13.036, 33.319 ], "bp2_params": [ 0.122, -0.165, -0.636, -8.434, 7.504, -3.049 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.814, "simple_Twist": 32.394, "simple_hRise": 3.732, "simple_hTwist": 33.685 }, { "index": 2, "nt1": "///2/1278", "nt2": "///2/1319", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.122, -0.165, -0.636, -8.434, 7.504, -3.049 ], "step_params": [ 0.549, -1.920, 3.173, -4.967, 5.680, 36.222 ], "heli_params": [ -3.728, -1.478, 2.754, 9.016, 7.884, 36.974 ], "bp2_params": [ 0.197, -0.138, 0.060, -2.416, 12.623, 0.344 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.173, "simple_Twist": 35.945, "simple_hRise": 2.751, "simple_hTwist": 36.703 }, { "index": 3, "nt1": "///2/1279", "nt2": "///2/1318", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.197, -0.138, 0.060, -2.416, 12.623, 0.344 ], "step_params": [ 0.055, -1.382, 2.913, 2.498, 23.873, 36.895 ], "heli_params": [ -3.632, 0.112, 1.748, 33.710, -3.528, 43.787 ], "bp2_params": [ -0.224, -0.139, -0.157, -6.430, -10.585, 0.582 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.913, "simple_Twist": 38.830, "simple_hRise": 1.813, "simple_hTwist": 45.406 }, { "index": 4, "nt1": "///2/1280", "nt2": "///2/1317", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.224, -0.139, -0.157, -6.430, -10.585, 0.582 ], "step_params": [ 0.085, -1.930, 3.477, -0.094, 2.747, 31.723 ], "heli_params": [ -4.039, -0.173, 3.302, 5.014, 0.171, 31.839 ], "bp2_params": [ -0.168, -0.185, -0.729, -8.895, -1.604, 0.076 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.477, "simple_Twist": 31.568, "simple_hRise": 3.301, "simple_hTwist": 31.685 }, { "index": 5, "nt1": "///2/1281", "nt2": "///2/1316", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 81, "helix_index": 42, "strand1": "GA", "strand2": "CU", "bp_type": "||", "helix_form": ".", "helical_rise": 4.693, "helical_rise_std": 0.041, "helical_radius": 9.063, "helical_radius_std": 2.931, "helical_axis": [ 0.440, 0.783, -0.439 ], "point1": [ 228.105, 212.885, 281.052 ], "point2": [ 230.177, 216.576, 278.982 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1290", "nt2": "///2/1309", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.540, 0.071, -0.675, -41.561, 12.965, -28.081 ], "step_params": [ 2.373, -1.591, 3.223, 13.595, -9.637, 21.031 ], "heli_params": [ -0.204, -0.565, 4.298, -22.408, -31.611, 26.774 ], "bp2_params": [ 0.115, -0.103, -0.650, -5.258, 0.155, -3.549 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.223, "simple_Twist": 21.615, "simple_hRise": 4.294, "simple_hTwist": 27.233 }, { "index": 2, "nt1": "///2/1291", "nt2": "///2/1308", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 82, "helix_index": 42, "strand1": "GA", "strand2": "CU", "bp_type": "||", "helix_form": ".", "helical_rise": 2.424, "helical_rise_std": 0.047, "helical_radius": 7.814, "helical_radius_std": 1.483, "helical_axis": [ -0.650, 0.731, -0.209 ], "point1": [ 225.136, 227.800, 276.665 ], "point2": [ 223.560, 229.573, 276.159 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1294", "nt2": "///2/1305", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.064, -0.175, -0.767, -16.721, 17.329, -3.443 ], "step_params": [ -1.109, -1.369, 3.705, -2.482, 30.072, 41.049 ], "heli_params": [ -3.805, 1.117, 2.315, 37.429, 3.089, 50.558 ], "bp2_params": [ 0.475, -0.283, -1.320, -18.151, 18.369, -12.570 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.705, "simple_Twist": 38.348, "simple_hRise": 2.203, "simple_hTwist": 48.442 }, { "index": 2, "nt1": "///2/1295", "nt2": "///2/1304", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 83, "helix_index": 43, "strand1": "GG", "strand2": "UC", "bp_type": "||", "helix_form": ".", "helical_rise": 3.216, "helical_rise_std": 0.029, "helical_radius": 10.200, "helical_radius_std": 0.918, "helical_axis": [ -0.934, 0.128, -0.335 ], "point1": [ 213.393, 205.810, 245.173 ], "point2": [ 210.393, 206.221, 244.097 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1324", "nt2": "///2/1504", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.629, -0.811, 1.161, 0.932, 7.195, 1.590 ], "step_params": [ 0.519, -1.614, 3.341, 1.673, 4.491, 38.710 ], "heli_params": [ -2.959, -0.576, 3.160, 6.743, -2.512, 38.994 ], "bp2_params": [ -0.139, -0.319, 1.231, 6.328, 3.508, 1.747 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.341, "simple_Twist": 24.793, "simple_hRise": 3.033, "simple_hTwist": 25.244 }, { "index": 2, "nt1": "///2/1325", "nt2": "///2/1503", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 84, "helix_index": 43, "strand1": "GGU", "strand2": "CCG", "bp_type": "|||", "helix_form": "..", "helical_rise": 2.908, "helical_rise_std": 0.448, "helical_radius": 9.360, "helical_radius_std": 2.470, "helical_axis": [ -0.910, 0.213, -0.355 ], "point1": [ 207.758, 209.626, 243.272 ], "point2": [ 202.484, 210.858, 241.217 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1327", "nt2": "///2/1502", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.366, 0.080, 0.909, 7.064, -8.892, 8.459 ], "step_params": [ -0.553, -2.113, 3.128, 1.746, 9.133, 36.056 ], "heli_params": [ -4.376, 1.070, 2.509, 14.460, -2.764, 37.197 ], "bp2_params": [ -0.185, -0.143, 0.400, -0.254, 1.289, 1.603 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.128, "simple_Twist": 35.058, "simple_hRise": 2.489, "simple_hTwist": 36.233 }, { "index": 2, "nt1": "///2/1328", "nt2": "///2/1501", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.185, -0.143, 0.400, -0.254, 1.289, 1.603 ], "step_params": [ -1.483, -1.350, 3.615, 2.059, 1.309, 39.289 ], "heli_params": [ -2.173, 2.467, 3.491, 1.945, -3.058, 39.362 ], "bp2_params": [ 1.767, -0.252, 1.022, 0.396, 0.426, -24.995 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.615, "simple_Twist": 29.445, "simple_hRise": 3.444, "simple_hTwist": 29.544 }, { "index": 3, "nt1": "///2/1329", "nt2": "///2/1500", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 85, "helix_index": 44, "strand1": "GCC", "strand2": "UGG", "bp_type": "|||", "helix_form": ".A", "helical_rise": 2.889, "helical_rise_std": 0.187, "helical_radius": 8.711, "helical_radius_std": 1.122, "helical_axis": [ -0.963, -0.017, -0.267 ], "point1": [ 192.353, 210.966, 232.953 ], "point2": [ 186.782, 210.869, 231.407 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1335", "nt2": "///2/1492", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.563, -0.573, -0.205, -2.857, 2.474, -8.946 ], "step_params": [ 0.652, -1.119, 3.448, -1.591, 2.358, 39.758 ], "heli_params": [ -1.925, -1.148, 3.352, 3.462, 2.336, 39.856 ], "bp2_params": [ 0.180, -0.123, -0.200, 3.531, 2.958, 0.293 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.448, "simple_Twist": 25.137, "simple_hRise": 3.284, "simple_hTwist": 25.295 }, { "index": 2, "nt1": "///2/1336", "nt2": "///2/1491", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.180, -0.123, -0.200, 3.531, 2.958, 0.293 ], "step_params": [ 0.576, -1.854, 3.117, -1.396, 16.013, 34.853 ], "heli_params": [ -4.505, -1.025, 2.075, 25.147, 2.193, 38.277 ], "bp2_params": [ 0.207, -0.131, 0.183, 1.010, -5.996, 0.687 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.117, "simple_Twist": 34.867, "simple_hRise": 2.076, "simple_hTwist": 38.289 }, { "index": 3, "nt1": "///2/1337", "nt2": "///2/1490", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 86, "helix_index": 45, "strand1": "GU", "strand2": "CA", "bp_type": "||", "helix_form": ".", "helical_rise": 3.279, "helical_rise_std": 0.005, "helical_radius": 8.599, "helical_radius_std": 1.050, "helical_axis": [ 0.612, -0.322, -0.722 ], "point1": [ 163.425, 195.267, 212.180 ], "point2": [ 165.433, 194.210, 209.812 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1349", "nt2": "///2/1380", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.134, -0.289, 0.709, -18.879, 1.043, -0.197 ], "step_params": [ 0.131, -1.670, 3.806, -10.754, 6.642, 37.876 ], "heli_params": [ -3.309, -1.585, 3.321, 9.901, 16.031, 39.856 ], "bp2_params": [ -0.030, -0.433, 2.268, -33.213, 24.650, 7.315 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.806, "simple_Twist": 39.089, "simple_hRise": 3.342, "simple_hTwist": 41.005 }, { "index": 2, "nt1": "///2/1350", "nt2": "///2/1379", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 87, "helix_index": 46, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": "A", "helical_rise": 2.996, "helical_rise_std": 0.052, "helical_radius": 9.092, "helical_radius_std": 0.551, "helical_axis": [ 0.114, 0.875, 0.471 ], "point1": [ 156.818, 208.215, 210.976 ], "point2": [ 157.160, 210.835, 212.388 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1365", "nt2": "///2/1374", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.172, -0.124, 0.047, 2.121, 0.120, 0.269 ], "step_params": [ -0.238, -1.595, 3.272, -0.422, 5.196, 33.029 ], "heli_params": [ -3.602, 0.346, 2.996, 9.070, 0.737, 33.426 ], "bp2_params": [ -0.179, -0.182, -0.413, 2.365, 6.649, 0.114 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.272, "simple_Twist": 33.069, "simple_hRise": 2.997, "simple_hTwist": 33.467 }, { "index": 2, "nt1": "///2/1366", "nt2": "///2/1373", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 88, "helix_index": 47, "strand1": "CUC", "strand2": "GAG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.679, "helical_rise_std": 0.040, "helical_radius": 8.827, "helical_radius_std": 0.315, "helical_axis": [ -0.723, -0.054, 0.688 ], "point1": [ 160.078, 212.826, 235.571 ], "point2": [ 156.228, 212.540, 239.236 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1389", "nt2": "///2/1481", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.174, -0.324, 1.017, 5.946, 4.807, 1.196 ], "step_params": [ 0.103, -1.904, 3.182, -0.508, 4.398, 40.355 ], "heli_params": [ -3.206, -0.202, 2.965, 6.351, 0.733, 40.587 ], "bp2_params": [ -0.078, -0.285, 0.933, 2.431, 3.688, -0.136 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.182, "simple_Twist": 41.921, "simple_hRise": 2.975, "simple_hTwist": 42.143 }, { "index": 2, "nt1": "///2/1390", "nt2": "///2/1480", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.078, -0.285, 0.933, 2.431, 3.688, -0.136 ], "step_params": [ -0.799, -2.220, 3.027, 0.742, 5.216, 32.357 ], "heli_params": [ -4.715, 1.527, 2.629, 9.282, -1.321, 32.772 ], "bp2_params": [ 0.169, -0.210, 0.570, 3.247, 8.320, 1.338 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.027, "simple_Twist": 30.689, "simple_hRise": 2.604, "simple_hTwist": 31.127 }, { "index": 3, "nt1": "///2/1391", "nt2": "///2/1479", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 89, "helix_index": 48, "strand1": "AGUU", "strand2": "UCAA", "bp_type": "||||", "helix_form": ".AA", "helical_rise": 3.847, "helical_rise_std": 0.317, "helical_radius": 9.526, "helical_radius_std": 0.940, "helical_axis": [ -0.563, 0.601, 0.566 ], "point1": [ 145.636, 212.520, 271.033 ], "point2": [ 139.034, 219.568, 277.670 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1405", "nt2": "///2/1441", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.290, 0.135, -0.303, -23.946, -7.336, -0.656 ], "step_params": [ 1.064, -1.826, 3.383, 6.730, 0.899, 21.614 ], "heli_params": [ -5.002, -0.088, 3.472, 2.324, -17.402, 22.643 ], "bp2_params": [ -0.144, -0.244, -1.035, -8.562, -2.122, 0.645 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.383, "simple_Twist": 24.405, "simple_hRise": 3.478, "simple_hTwist": 25.318 }, { "index": 2, "nt1": "///2/1406", "nt2": "///2/1440", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.144, -0.244, -1.035, -8.562, -2.122, 0.645 ], "step_params": [ -0.116, -1.509, 3.430, -3.682, 0.508, 32.962 ], "heli_params": [ -2.733, -0.444, 3.400, 0.892, 6.463, 33.165 ], "bp2_params": [ -0.061, -0.167, -0.695, -7.190, 2.166, -2.111 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.430, "simple_Twist": 32.435, "simple_hRise": 3.399, "simple_hTwist": 32.642 }, { "index": 3, "nt1": "///2/1407", "nt2": "///2/1439", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.061, -0.167, -0.695, -7.190, 2.166, -2.111 ], "step_params": [ 0.573, -1.561, 3.287, -4.957, 3.795, 34.017 ], "heli_params": [ -3.194, -1.704, 2.990, 6.419, 8.386, 34.569 ], "bp2_params": [ -0.030, -0.092, -0.123, -5.142, 6.795, 1.226 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.287, "simple_Twist": 33.849, "simple_hRise": 2.988, "simple_hTwist": 34.404 }, { "index": 4, "nt1": "///2/1408", "nt2": "///2/1438", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 90, "helix_index": 48, "strand1": "ACGC", "strand2": "UGCG", "bp_type": "||||", "helix_form": "A.A", "helical_rise": 2.516, "helical_rise_std": 0.408, "helical_radius": 9.700, "helical_radius_std": 0.918, "helical_axis": [ -0.483, 0.823, 0.299 ], "point1": [ 141.352, 223.340, 278.207 ], "point2": [ 137.737, 229.497, 280.442 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1409", "nt2": "///2/1432", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.038, -0.180, 0.687, -2.082, -0.238, -1.026 ], "step_params": [ -0.211, -1.643, 3.150, -0.900, 2.650, 37.633 ], "heli_params": [ -2.865, 0.217, 3.035, 4.100, 1.392, 37.733 ], "bp2_params": [ 0.190, -0.199, 0.609, 0.942, 3.707, 1.723 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.150, "simple_Twist": 36.946, "simple_hRise": 3.033, "simple_hTwist": 37.048 }, { "index": 2, "nt1": "///2/1410", "nt2": "///2/1431", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.190, -0.199, 0.609, 0.942, 3.707, 1.723 ], "step_params": [ -1.502, -2.486, 2.943, -0.264, 13.923, 21.003 ], "heli_params": [ -8.487, 3.396, 1.118, 33.818, 0.640, 25.157 ], "bp2_params": [ -0.198, -0.154, -0.465, 1.129, -7.045, 1.903 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.943, "simple_Twist": 23.257, "simple_hRise": 1.288, "simple_hTwist": 27.058 }, { "index": 3, "nt1": "///2/1411", "nt2": "///2/1430", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.154, -0.465, 1.129, -7.045, 1.903 ], "step_params": [ 0.157, -1.657, 3.237, -1.113, -0.297, 34.898 ], "heli_params": [ -2.716, -0.428, 3.244, -0.495, 1.855, 34.917 ], "bp2_params": [ 0.193, -0.160, -0.583, 0.916, -6.622, 3.539 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.237, "simple_Twist": 32.507, "simple_hRise": 3.244, "simple_hTwist": 32.527 }, { "index": 4, "nt1": "///2/1412", "nt2": "///2/1429", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 91, "helix_index": 48, "strand1": "GACC", "strand2": "CUGG", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.192, "helical_rise_std": 0.228, "helical_radius": 8.906, "helical_radius_std": 0.445, "helical_axis": [ -0.330, 0.647, 0.687 ], "point1": [ 133.342, 231.544, 282.110 ], "point2": [ 131.200, 235.740, 286.565 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///2/1413", "nt2": "///2/1427", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.207, -0.138, 0.211, -7.530, 10.226, 2.077 ], "step_params": [ -0.156, -1.793, 3.231, -4.679, 7.304, 32.642 ], "heli_params": [ -4.195, -0.440, 2.772, 12.718, 8.147, 33.745 ], "bp2_params": [ 0.007, -0.144, 0.266, -2.669, 20.747, 4.719 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.231, "simple_Twist": 31.493, "simple_hRise": 2.751, "simple_hTwist": 32.637 }, { "index": 2, "nt1": "///2/1414", "nt2": "///2/1426", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.007, -0.144, 0.266, -2.669, 20.747, 4.719 ], "step_params": [ 0.089, -2.138, 3.222, 0.129, 8.305, 29.288 ], "heli_params": [ -5.566, -0.147, 2.534, 16.023, -0.250, 30.419 ], "bp2_params": [ 0.144, 0.056, 0.111, 9.127, 31.392, 8.954 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.222, "simple_Twist": 27.874, "simple_hRise": 2.495, "simple_hTwist": 29.062 }, { "index": 3, "nt1": "///2/1415", "nt2": "///2/1425", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.144, 0.056, 0.111, 9.127, 31.392, 8.954 ], "step_params": [ -0.657, -1.846, 3.405, 10.295, 12.783, 29.627 ], "heli_params": [ -5.047, 2.636, 2.118, 22.918, -18.457, 33.780 ], "bp2_params": [ 0.109, -0.239, -0.752, 4.955, 10.112, -2.181 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.405, "simple_Twist": 30.182, "simple_hRise": 2.144, "simple_hTwist": 34.265 }, { "index": 4, "nt1": "///2/1416", "nt2": "///2/1424", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 92, "helix_index": 51, "strand1": "GUGGC", "strand2": "CACCG", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.530, "helical_rise_std": 0.367, "helical_radius": 8.783, "helical_radius_std": 1.071, "helical_axis": [ -0.201, -0.367, -0.908 ], "point1": [ 138.726, 217.496, 227.453 ], "point2": [ 136.730, 213.853, 218.423 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/1456", "nt2": "///2/1470", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.218, -0.169, -0.595, -5.252, -7.764, 2.088 ], "step_params": [ -0.982, -1.323, 3.389, -2.159, 1.056, 32.977 ], "heli_params": [ -2.510, 1.346, 3.402, 1.857, 3.797, 33.062 ], "bp2_params": [ -0.145, -0.228, -0.942, -2.651, -3.008, -3.208 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.389, "simple_Twist": 32.596, "simple_hRise": 3.402, "simple_hTwist": 32.683 }, { "index": 2, "nt1": "///2/1457", "nt2": "///2/1469", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.145, -0.228, -0.942, -2.651, -3.008, -3.208 ], "step_params": [ 0.366, -0.879, 3.582, -5.443, 23.043, 31.204 ], "heli_params": [ -4.143, -1.216, 2.330, 36.916, 8.720, 38.991 ], "bp2_params": [ -0.162, -0.191, -0.755, -8.812, -1.401, 0.548 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.582, "simple_Twist": 31.465, "simple_hRise": 2.342, "simple_hTwist": 39.198 }, { "index": 3, "nt1": "///2/1458", "nt2": "///2/1468", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.162, -0.191, -0.755, -8.812, -1.401, 0.548 ], "step_params": [ -0.152, -1.529, 3.366, -3.335, 3.185, 32.326 ], "heli_params": [ -3.279, -0.313, 3.204, 5.684, 5.952, 32.645 ], "bp2_params": [ -0.114, -0.188, -0.790, -8.899, 5.361, -0.874 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.366, "simple_Twist": 32.257, "simple_hRise": 3.204, "simple_hTwist": 32.577 }, { "index": 4, "nt1": "///2/1459", "nt2": "///2/1467", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.114, -0.188, -0.790, -8.899, 5.361, -0.874 ], "step_params": [ 0.032, -1.857, 3.246, -4.725, 4.213, 33.920 ], "heli_params": [ -3.758, -0.756, 2.970, 7.144, 8.012, 34.488 ], "bp2_params": [ 0.212, -0.158, -0.196, -4.605, 13.608, -0.173 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.246, "simple_Twist": 32.016, "simple_hRise": 2.950, "simple_hTwist": 32.620 }, { "index": 5, "nt1": "///2/1460", "nt2": "///2/1466", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 93, "helix_index": 52, "strand1": "GA", "strand2": "CU", "bp_type": "||", "helix_form": ".", "helical_rise": 3.558, "helical_rise_std": 0.048, "helical_radius": 8.938, "helical_radius_std": 0.811, "helical_axis": [ 0.206, -0.677, 0.706 ], "point1": [ 154.392, 262.287, 253.712 ], "point2": [ 155.127, 259.873, 256.230 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1536", "nt2": "///2/1597", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.233, -0.142, -0.603, -7.223, -2.936, 2.903 ], "step_params": [ -1.736, -1.280, 3.426, -5.327, 6.251, 32.280 ], "heli_params": [ -3.334, 2.094, 3.362, 11.022, 9.393, 33.281 ], "bp2_params": [ 0.118, -0.306, -1.223, -4.732, -3.175, -3.308 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.426, "simple_Twist": 30.352, "simple_hRise": 3.351, "simple_hTwist": 31.418 }, { "index": 2, "nt1": "///2/1537", "nt2": "///2/1596", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 94, "helix_index": 52, "strand1": "UGG", "strand2": "ACC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.804, "helical_rise_std": 0.348, "helical_radius": 9.311, "helical_radius_std": 0.466, "helical_axis": [ 0.186, -0.811, 0.554 ], "point1": [ 156.130, 256.293, 257.173 ], "point2": [ 157.192, 251.662, 260.334 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1539", "nt2": "///2/1594", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.029, -0.115, -0.592, -0.071, -0.802, 1.439 ], "step_params": [ 0.729, -1.379, 2.825, -5.609, 20.918, 33.419 ], "heli_params": [ -3.837, -1.558, 1.588, 32.487, 8.711, 39.654 ], "bp2_params": [ -0.192, -0.125, 0.366, 3.032, -2.794, 1.103 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.825, "simple_Twist": 34.102, "simple_hRise": 1.615, "simple_hTwist": 40.224 }, { "index": 2, "nt1": "///2/1540", "nt2": "///2/1593", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.192, -0.125, 0.366, 3.032, -2.794, 1.103 ], "step_params": [ -0.049, -1.821, 3.091, 2.011, 2.533, 33.340 ], "heli_params": [ -3.545, 0.391, 2.941, 4.402, -3.496, 33.492 ], "bp2_params": [ -0.181, -0.133, -0.151, 4.768, -8.320, 2.982 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.091, "simple_Twist": 33.718, "simple_hRise": 2.943, "simple_hTwist": 33.868 }, { "index": 3, "nt1": "///2/1541", "nt2": "///2/1592", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 95, "helix_index": 54, "strand1": "CCU", "strand2": "GGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 3.575, "helical_rise_std": 0.130, "helical_radius": 9.062, "helical_radius_std": 1.373, "helical_axis": [ -0.226, 0.960, 0.164 ], "point1": [ 173.728, 223.160, 276.698 ], "point2": [ 172.083, 230.147, 277.890 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1558", "nt2": "///2/1577", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.214, -0.191, -0.677, -3.350, -3.700, 2.349 ], "step_params": [ -0.706, -0.801, 2.836, 4.182, 10.963, 32.469 ], "heli_params": [ -2.744, 1.722, 2.345, 18.856, -7.192, 34.470 ], "bp2_params": [ 0.035, -0.221, -1.099, 15.800, 6.601, -3.494 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.836, "simple_Twist": 33.308, "simple_hRise": 2.360, "simple_hTwist": 35.259 }, { "index": 2, "nt1": "///2/1559", "nt2": "///2/1576", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.035, -0.221, -1.099, 15.800, 6.601, -3.494 ], "step_params": [ 3.062, -0.687, 3.099, 7.280, 3.151, 27.362 ], "heli_params": [ -2.159, -4.465, 3.674, 6.491, -14.995, 28.468 ], "bp2_params": [ 2.732, 0.133, -1.784, 37.090, -4.553, 17.861 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.099, "simple_Twist": 12.072, "simple_hRise": 3.982, "simple_hTwist": 14.437 }, { "index": 3, "nt1": "///2/1560", "nt2": "///2/1575", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 96, "helix_index": 55, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": ".", "helical_rise": 1.939, "helical_rise_std": 0.079, "helical_radius": 8.036, "helical_radius_std": 1.028, "helical_axis": [ -0.398, 0.911, 0.111 ], "point1": [ 171.855, 242.473, 279.182 ], "point2": [ 171.083, 244.241, 279.398 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1564", "nt2": "///2/1571", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.107, -0.305, -0.966, -4.520, 19.585, -6.762 ], "step_params": [ 0.865, -1.590, 3.149, 5.384, 24.826, 37.877 ], "heli_params": [ -3.942, -0.715, 1.912, 33.988, -7.371, 45.345 ], "bp2_params": [ 0.157, -0.255, -0.900, -3.594, 1.934, -0.274 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.149, "simple_Twist": 37.600, "simple_hRise": 1.902, "simple_hTwist": 45.119 }, { "index": 2, "nt1": "///2/1565", "nt2": "///2/1570", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 97, "helix_index": 39, "strand1": "GGGGA", "strand2": "CCCCU", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.588, "helical_rise_std": 0.328, "helical_radius": 9.279, "helical_radius_std": 0.434, "helical_axis": [ 0.641, -0.542, 0.544 ], "point1": [ 183.097, 255.368, 261.476 ], "point2": [ 189.703, 249.783, 267.091 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/1610", "nt2": "///2/1629", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.115, -0.222, -0.925, -13.208, 4.778, -1.680 ], "step_params": [ 0.087, -1.228, 3.477, -3.651, 5.383, 24.969 ], "heli_params": [ -4.290, -1.239, 3.104, 12.189, 8.266, 25.789 ], "bp2_params": [ -0.115, -0.187, -0.702, -6.256, 13.209, -1.156 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.477, "simple_Twist": 25.202, "simple_hRise": 3.108, "simple_hTwist": 26.015 }, { "index": 2, "nt1": "///2/1611", "nt2": "///2/1628", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.115, -0.187, -0.702, -6.256, 13.209, -1.156 ], "step_params": [ 0.383, -1.729, 3.124, -2.138, 18.252, 31.463 ], "heli_params": [ -4.864, -0.860, 1.849, 30.611, 3.585, 36.319 ], "bp2_params": [ -0.200, -0.192, -0.732, -3.111, -4.442, 2.199 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.124, "simple_Twist": 31.635, "simple_hRise": 1.856, "simple_hTwist": 36.467 }, { "index": 3, "nt1": "///2/1612", "nt2": "///2/1627", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.192, -0.732, -3.111, -4.442, 2.199 ], "step_params": [ -0.429, -1.710, 3.161, -3.576, 11.310, 33.292 ], "heli_params": [ -4.315, 0.236, 2.497, 19.006, 6.010, 35.285 ], "bp2_params": [ -0.165, -0.152, -0.606, -7.469, 2.335, -0.124 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.161, "simple_Twist": 33.087, "simple_hRise": 2.492, "simple_hTwist": 35.093 }, { "index": 4, "nt1": "///2/1613", "nt2": "///2/1626", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.152, -0.606, -7.469, 2.335, -0.124 ], "step_params": [ -0.624, -1.891, 3.483, -0.984, 2.396, 30.245 ], "heli_params": [ -4.114, 0.985, 3.345, 4.581, 1.882, 30.354 ], "bp2_params": [ 0.209, -0.242, -1.070, -4.989, 12.370, -5.194 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.483, "simple_Twist": 28.216, "simple_hRise": 3.334, "simple_hTwist": 28.332 }, { "index": 5, "nt1": "///2/1614", "nt2": "///2/1625", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 98, "helix_index": 56, "strand1": "AGUGC", "strand2": "UUGCG", "bp_type": "|||||", "helix_form": "A..A", "helical_rise": 2.349, "helical_rise_std": 0.431, "helical_radius": 9.332, "helical_radius_std": 0.921, "helical_axis": [ 0.883, 0.237, 0.406 ], "point1": [ 159.652, 233.566, 244.591 ], "point2": [ 167.840, 235.762, 248.359 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/1651", "nt2": "///2/1673", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.100, -0.142, 0.694, 5.402, 1.396, -1.033 ], "step_params": [ 0.110, -1.811, 2.881, -3.478, 13.257, 29.194 ], "heli_params": [ -5.079, -0.674, 1.878, 24.660, 6.470, 32.187 ], "bp2_params": [ -1.867, -0.415, 0.420, 7.705, 9.138, -1.480 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.881, "simple_Twist": 39.906, "simple_hRise": 2.181, "simple_hTwist": 42.103 }, { "index": 2, "nt1": "///2/1652", "nt2": "///2/1672", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.867, -0.415, 0.420, 7.705, 9.138, -1.480 ], "step_params": [ 0.867, -1.624, 2.995, 6.132, 4.309, 48.502 ], "heli_params": [ -2.253, -0.623, 2.932, 5.209, -7.412, 49.043 ], "bp2_params": [ 1.658, -0.405, -0.608, 15.368, 0.790, -3.427 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.995, "simple_Twist": 29.811, "simple_hRise": 2.856, "simple_hTwist": 30.717 }, { "index": 3, "nt1": "///2/1653", "nt2": "///2/1671", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.658, -0.405, -0.608, 15.368, 0.790, -3.427 ], "step_params": [ -0.030, -1.662, 3.788, 5.688, 22.547, 17.629 ], "heli_params": [ -7.880, 1.214, 1.027, 51.703, -13.043, 29.107 ], "bp2_params": [ -0.237, -0.152, -0.589, -5.353, -10.162, 3.544 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.788, "simple_Twist": 27.402, "simple_hRise": 1.889, "simple_hTwist": 35.794 }, { "index": 4, "nt1": "///2/1654", "nt2": "///2/1670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.237, -0.152, -0.589, -5.353, -10.162, 3.544 ], "step_params": [ -1.088, -1.716, 3.306, -5.120, -3.152, 35.771 ], "heli_params": [ -2.291, 0.990, 3.556, -5.088, 8.263, 36.256 ], "bp2_params": [ 0.171, -0.173, -0.489, -3.054, -4.411, 0.223 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.306, "simple_Twist": 33.480, "simple_hRise": 3.571, "simple_hTwist": 34.000 }, { "index": 5, "nt1": "///2/1655", "nt2": "///2/1669", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 99, "helix_index": 56, "strand1": "GG", "strand2": "UC", "bp_type": "||", "helix_form": "A", "helical_rise": 2.796, "helical_rise_std": 0.016, "helical_radius": 8.530, "helical_radius_std": 0.845, "helical_axis": [ 0.778, 0.035, 0.628 ], "point1": [ 173.637, 233.854, 253.490 ], "point2": [ 175.811, 233.951, 255.244 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1657", "nt2": "///2/1667", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.172, -0.471, -0.059, -5.780, 3.910, -9.143 ], "step_params": [ 0.088, -1.536, 3.006, -1.827, 6.297, 39.009 ], "heli_params": [ -2.923, -0.320, 2.728, 9.350, 2.712, 39.535 ], "bp2_params": [ -0.170, -0.135, 0.018, 0.053, 8.903, -0.759 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.006, "simple_Twist": 33.765, "simple_hRise": 2.676, "simple_hTwist": 34.377 }, { "index": 2, "nt1": "///2/1658", "nt2": "///2/1666", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 100, "helix_index": 58, "strand1": "CG", "strand2": "GC", "bp_type": "||", "helix_form": ".", "helical_rise": 2.066, "helical_rise_std": 0.085, "helical_radius": 10.409, "helical_radius_std": 1.631, "helical_axis": [ 0.669, -0.520, -0.532 ], "point1": [ 205.836, 223.461, 202.988 ], "point2": [ 207.214, 222.390, 201.892 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1705", "nt2": "///2/1829", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.397, 0.338, -0.141, -14.179, 30.037, -7.233 ], "step_params": [ -1.240, -1.805, 3.182, -0.633, 15.915, 31.398 ], "heli_params": [ -5.023, 1.975, 2.078, 27.318, 1.086, 35.116 ], "bp2_params": [ 1.537, 0.553, 0.172, -3.572, 4.998, -16.694 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.182, "simple_Twist": 21.295, "simple_hRise": 1.521, "simple_hTwist": 26.538 }, { "index": 2, "nt1": "///2/1706", "nt2": "///2/1828", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 101, "helix_index": 58, "strand1": "UAC", "strand2": "AUG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.085, "helical_rise_std": 0.540, "helical_radius": 8.339, "helical_radius_std": 0.740, "helical_axis": [ 0.832, 0.028, -0.554 ], "point1": [ 217.067, 218.671, 191.308 ], "point2": [ 220.440, 218.783, 189.065 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1711", "nt2": "///2/1822", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.169, -0.129, -0.730, -9.665, 8.384, -5.386 ], "step_params": [ 0.240, -0.764, 3.051, -5.888, 19.997, 31.136 ], "heli_params": [ -3.491, -1.051, 2.122, 33.024, 9.724, 37.326 ], "bp2_params": [ 0.035, -0.085, -0.249, 2.246, -8.350, 1.501 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.051, "simple_Twist": 29.869, "simple_hRise": 2.075, "simple_hTwist": 36.288 }, { "index": 2, "nt1": "///2/1712", "nt2": "///2/1821", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.035, -0.085, -0.249, 2.246, -8.350, 1.501 ], "step_params": [ 0.167, -1.017, 3.104, 4.170, 0.487, 31.010 ], "heli_params": [ -1.973, 0.439, 3.084, 0.905, -7.756, 31.286 ], "bp2_params": [ 0.272, -0.201, -0.923, 12.588, -12.791, 5.127 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.104, "simple_Twist": 30.102, "simple_hRise": 3.083, "simple_hTwist": 30.387 }, { "index": 3, "nt1": "///2/1713", "nt2": "///2/1820", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 102, "helix_index": 58, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.932, "helical_rise_std": 0.034, "helical_radius": 8.544, "helical_radius_std": 0.396, "helical_axis": [ 0.577, -0.237, -0.782 ], "point1": [ 226.315, 218.304, 179.345 ], "point2": [ 228.003, 217.609, 177.055 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1716", "nt2": "///2/1817", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.060, -0.474, -0.714, 12.251, -17.851, -3.443 ], "step_params": [ 0.516, -1.236, 3.587, -4.559, 13.237, 35.790 ], "heli_params": [ -3.581, -1.371, 2.884, 20.594, 7.092, 38.347 ], "bp2_params": [ 0.192, -0.122, 0.113, 4.388, 3.283, 1.113 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.587, "simple_Twist": 33.838, "simple_hRise": 2.832, "simple_hTwist": 36.541 }, { "index": 2, "nt1": "///2/1717", "nt2": "///2/1816", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 103, "helix_index": 58, "strand1": "GAUGG", "strand2": "CUAUC", "bp_type": "|||||", "helix_form": ".A..", "helical_rise": 2.573, "helical_rise_std": 0.565, "helical_radius": 8.856, "helical_radius_std": 0.980, "helical_axis": [ 0.570, -0.463, -0.679 ], "point1": [ 233.541, 210.694, 163.073 ], "point2": [ 239.441, 205.898, 156.048 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///2/1723", "nt2": "///2/1811", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.096, -0.301, -0.970, -4.807, 7.171, -3.482 ], "step_params": [ 1.572, -1.433, 3.309, -0.314, 5.431, 37.232 ], "heli_params": [ -2.915, -2.479, 3.064, 8.451, 0.488, 37.613 ], "bp2_params": [ 0.094, -0.094, -0.152, 0.030, 7.058, -0.354 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.309, "simple_Twist": 36.353, "simple_hRise": 3.057, "simple_hTwist": 36.744 }, { "index": 2, "nt1": "///2/1724", "nt2": "///2/1810", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.094, -0.094, -0.152, 0.030, 7.058, -0.354 ], "step_params": [ 0.796, -1.891, 3.497, -0.501, 3.478, 27.803 ], "heli_params": [ -4.754, -1.766, 3.227, 7.201, 1.037, 28.020 ], "bp2_params": [ 0.040, -0.162, 0.580, 4.316, 5.281, 2.921 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.497, "simple_Twist": 28.008, "simple_hRise": 3.229, "simple_hTwist": 28.224 }, { "index": 3, "nt1": "///2/1725", "nt2": "///2/1809", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.040, -0.162, 0.580, 4.316, 5.281, 2.921 ], "step_params": [ 1.065, -1.583, 2.804, 3.460, 47.986, 26.187 ], "heli_params": [ -3.562, -1.033, 0.085, 62.929, -4.538, 54.401 ], "bp2_params": [ -2.896, -0.502, -0.549, -1.207, 1.629, 5.232 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.804, "simple_Twist": 42.353, "simple_hRise": 0.843, "simple_hTwist": 63.252 }, { "index": 4, "nt1": "///2/1726", "nt2": "///2/1808", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.896, -0.502, -0.549, -1.207, 1.629, 5.232 ], "step_params": [ -1.644, -1.209, 3.210, -1.060, 3.036, 39.016 ], "heli_params": [ -2.159, 2.331, 3.153, 4.536, 1.584, 39.143 ], "bp2_params": [ -0.117, -0.470, -1.353, 8.466, 4.666, -3.567 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.210, "simple_Twist": 23.319, "simple_hRise": 3.100, "simple_hTwist": 23.536 }, { "index": 5, "nt1": "///2/1727", "nt2": "///2/1807", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 104, "helix_index": 58, "strand1": "AGU", "strand2": "UCA", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.585, "helical_rise_std": 0.209, "helical_radius": 9.682, "helical_radius_std": 0.378, "helical_axis": [ 0.247, -0.547, -0.799 ], "point1": [ 241.567, 202.346, 145.109 ], "point2": [ 242.837, 199.536, 141.005 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1731", "nt2": "///2/1803", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.003, -0.114, -0.014, 2.461, 12.446, 4.212 ], "step_params": [ -0.026, -1.814, 3.371, 7.845, 17.077, 31.182 ], "heli_params": [ -5.066, 1.031, 2.071, 28.734, -13.200, 36.286 ], "bp2_params": [ -0.182, -0.237, -0.964, -4.382, -4.255, 1.598 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.371, "simple_Twist": 32.228, "simple_hRise": 2.118, "simple_hTwist": 37.181 }, { "index": 2, "nt1": "///2/1732", "nt2": "///2/1802", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.237, -0.964, -4.382, -4.255, 1.598 ], "step_params": [ 0.192, -1.976, 3.582, 0.281, 0.444, 27.565 ], "heli_params": [ -4.264, -0.327, 3.552, 0.931, -0.591, 27.570 ], "bp2_params": [ -0.081, -0.243, -0.950, -1.615, -3.086, 1.203 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.582, "simple_Twist": 26.892, "simple_hRise": 3.551, "simple_hTwist": 26.897 }, { "index": 3, "nt1": "///2/1733", "nt2": "///2/1801", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 105, "helix_index": 58, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.685, "helical_rise_std": 0.030, "helical_radius": 8.672, "helical_radius_std": 0.562, "helical_axis": [ 0.492, -0.653, -0.575 ], "point1": [ 254.657, 188.666, 132.148 ], "point2": [ 255.978, 186.913, 130.605 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1738", "nt2": "///2/1796", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.160, -0.369, 4.187, 1.931, -0.881 ], "step_params": [ 0.475, -1.950, 3.219, -0.969, 9.303, 35.584 ], "heli_params": [ -4.246, -0.873, 2.631, 14.906, 1.553, 36.754 ], "bp2_params": [ 0.180, -0.134, -0.224, 3.625, 11.453, 0.373 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.219, "simple_Twist": 35.433, "simple_hRise": 2.628, "simple_hTwist": 36.608 }, { "index": 2, "nt1": "///2/1739", "nt2": "///2/1795", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 106, "helix_index": 58, "strand1": "UC", "strand2": "AG", "bp_type": "||", "helix_form": ".", "helical_rise": 2.474, "helical_rise_std": 0.075, "helical_radius": 9.674, "helical_radius_std": 0.756, "helical_axis": [ 0.437, -0.711, -0.550 ], "point1": [ 257.564, 182.980, 128.966 ], "point2": [ 258.644, 181.223, 127.608 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1741", "nt2": "///2/1793", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.174, -0.280, -1.093, -0.694, 4.521, -2.627 ], "step_params": [ 1.136, -1.978, 3.397, 2.417, 10.121, 25.246 ], "heli_params": [ -6.575, -1.842, 2.525, 22.001, -5.253, 27.274 ], "bp2_params": [ -0.654, 0.098, -0.275, 0.467, -6.201, -1.071 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.397, "simple_Twist": 27.607, "simple_hRise": 2.612, "simple_hTwist": 29.468 }, { "index": 2, "nt1": "///2/1742", "nt2": "///2/1792", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 107, "helix_index": 58, "strand1": "UC", "strand2": "AG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.257, "helical_rise_std": 0.034, "helical_radius": 9.451, "helical_radius_std": 0.795, "helical_axis": [ 0.690, -0.576, -0.438 ], "point1": [ 270.293, 175.165, 119.211 ], "point2": [ 272.540, 173.290, 117.784 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1746", "nt2": "///2/1788", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.052, -0.155, -0.703, -2.098, 0.049, 2.429 ], "step_params": [ -0.130, -1.544, 3.361, -1.270, 1.991, 31.310 ], "heli_params": [ -3.231, -0.001, 3.261, 3.683, 2.349, 31.396 ], "bp2_params": [ 0.179, -0.120, -0.050, -0.010, -0.739, 1.201 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.361, "simple_Twist": 29.946, "simple_hRise": 3.256, "simple_hTwist": 30.037 }, { "index": 2, "nt1": "///2/1747", "nt2": "///2/1787", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 108, "helix_index": 58, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.974, "helical_rise_std": 0.082, "helical_radius": 9.397, "helical_radius_std": 1.522, "helical_axis": [ 0.711, -0.222, -0.667 ], "point1": [ 277.066, 168.776, 114.979 ], "point2": [ 279.889, 167.894, 112.334 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///2/1749", "nt2": "///2/1785", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.248, -0.764, 10.281, -9.829, 3.774 ], "step_params": [ 0.712, -1.425, 3.749, 6.049, -4.481, 32.561 ], "heli_params": [ -1.592, -0.042, 3.969, -7.862, -10.612, 33.397 ], "bp2_params": [ 0.498, -0.549, -0.689, 12.908, -27.914, -3.481 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.749, "simple_Twist": 29.169, "simple_hRise": 3.983, "simple_hTwist": 30.105 }, { "index": 2, "nt1": "///2/1750", "nt2": "///2/1784", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 109, "helix_index": 58, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": "..", "helical_rise": 2.112, "helical_rise_std": 0.185, "helical_radius": 6.684, "helical_radius_std": 2.071, "helical_axis": [ 0.668, -0.562, -0.488 ], "point1": [ 288.961, 156.880, 109.351 ], "point2": [ 291.586, 154.670, 107.435 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///2/1754", "nt2": "///2/1778", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.133, -0.496, 1.253, -5.699, -5.330, -5.151 ], "step_params": [ -0.290, -0.165, 5.107, -0.346, 1.532, 27.134 ], "heli_params": [ -0.951, 0.481, 5.093, 3.262, 0.738, 27.178 ], "bp2_params": [ 0.164, -0.235, -0.589, -4.682, 1.141, -1.713 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.107, "simple_Twist": 25.993, "simple_hRise": 5.092, "simple_hTwist": 26.039 }, { "index": 2, "nt1": "///2/1755", "nt2": "///2/1777", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.164, -0.235, -0.589, -4.682, 1.141, -1.713 ], "step_params": [ 3.460, -0.347, 3.944, -2.851, 3.022, 13.220 ], "heli_params": [ -4.627, -17.352, 2.980, 12.723, 12.004, 13.854 ], "bp2_params": [ 0.211, -0.194, 0.531, -0.303, 0.884, 0.122 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.944, "simple_Twist": 12.986, "simple_hRise": 2.961, "simple_hTwist": 13.632 }, { "index": 3, "nt1": "///2/1756", "nt2": "///2/1776", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 110, "helix_index": 59, "strand1": "UUCCGUAG", "strand2": "AAGGCGUC", "bp_type": "||||||||", "helix_form": ".AAAAAA", "helical_rise": 2.592, "helical_rise_std": 0.476, "helical_radius": 9.209, "helical_radius_std": 0.878, "helical_axis": [ 0.990, 0.109, -0.092 ], "point1": [ 180.154, 227.610, 178.486 ], "point2": [ 198.120, 229.592, 176.818 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///2/1839", "nt2": "///2/1860", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.168, 0.006, -1.336, -18.783, 2.076, -25.960 ], "step_params": [ 1.087, -0.569, 3.499, -5.173, 3.511, 33.964 ], "heli_params": [ -1.523, -2.662, 3.230, 5.947, 8.763, 34.518 ], "bp2_params": [ -0.102, -0.256, -0.923, -3.253, 4.972, -1.879 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.499, "simple_Twist": 28.519, "simple_hRise": 3.165, "simple_hTwist": 29.182 }, { "index": 2, "nt1": "///2/1840", "nt2": "///2/1859", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.102, -0.256, -0.923, -3.253, 4.972, -1.879 ], "step_params": [ 1.076, -2.101, 3.269, -1.377, 5.405, 36.091 ], "heli_params": [ -4.062, -1.898, 2.893, 8.660, 2.206, 36.505 ], "bp2_params": [ 0.227, -0.112, -0.051, -0.392, 4.796, 1.191 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.269, "simple_Twist": 34.539, "simple_hRise": 2.874, "simple_hTwist": 34.973 }, { "index": 3, "nt1": "///2/1841", "nt2": "///2/1858", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.227, -0.112, -0.051, -0.392, 4.796, 1.191 ], "step_params": [ 0.035, -2.244, 3.154, -0.004, 3.556, 28.395 ], "heli_params": [ -5.283, -0.071, 2.857, 7.214, 0.009, 28.613 ], "bp2_params": [ 0.204, -0.125, 0.392, 3.105, 2.921, 1.672 ], "groove_widths": [ 17.562, null, 16.601, null ], "simple_Rise": 3.154, "simple_Twist": 28.367, "simple_hRise": 2.857, "simple_hTwist": 28.584 }, { "index": 4, "nt1": "///2/1842", "nt2": "///2/1857", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.204, -0.125, 0.392, 3.105, 2.921, 1.672 ], "step_params": [ -0.319, -1.456, 3.088, 6.136, 30.083, 35.131 ], "heli_params": [ -3.886, 0.821, 1.413, 41.438, -8.452, 46.335 ], "bp2_params": [ -0.183, -0.146, -0.477, -6.173, -1.415, 0.013 ], "groove_widths": [ 18.502, 16.591, 15.614, 9.980 ], "simple_Rise": 3.088, "simple_Twist": 37.106, "simple_hRise": 1.501, "simple_hTwist": 47.814 }, { "index": 5, "nt1": "///2/1843", "nt2": "///2/1856", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.183, -0.146, -0.477, -6.173, -1.415, 0.013 ], "step_params": [ -0.232, -1.133, 3.489, -2.210, 3.977, 34.356 ], "heli_params": [ -2.544, 0.032, 3.349, 6.695, 3.721, 34.647 ], "bp2_params": [ 1.280, -0.369, 0.078, 1.067, -0.337, -7.595 ], "groove_widths": [ 18.918, null, 14.944, null ], "simple_Rise": 3.489, "simple_Twist": 26.628, "simple_hRise": 3.296, "simple_hTwist": 27.007 }, { "index": 6, "nt1": "///2/1844", "nt2": "///2/1855", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.280, -0.369, 0.078, 1.067, -0.337, -7.595 ], "step_params": [ 0.334, -1.980, 3.257, 2.773, 22.502, 28.964 ], "heli_params": [ -5.644, -0.224, 1.426, 38.427, -4.735, 36.632 ], "bp2_params": [ 0.075, -0.065, -0.406, -5.824, 7.106, -3.082 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.257, "simple_Twist": 35.240, "simple_hRise": 1.757, "simple_hTwist": 41.708 }, { "index": 7, "nt1": "///2/1845", "nt2": "///2/1854", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.075, -0.065, -0.406, -5.824, 7.106, -3.082 ], "step_params": [ -1.022, -1.425, 3.050, -2.299, 8.359, 31.057 ], "heli_params": [ -3.893, 1.478, 2.653, 15.243, 4.193, 32.216 ], "bp2_params": [ -0.190, -0.171, -0.453, 5.037, 14.741, -2.313 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.050, "simple_Twist": 32.435, "simple_hRise": 2.674, "simple_hTwist": 33.543 }, { "index": 8, "nt1": "///2/1846", "nt2": "///2/1853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 111, "helix_index": 60, "strand1": "CCUCCCGGG", "strand2": "GGAGGGCCC", "bp_type": "|||||||||", "helix_form": "AAAA.AA.", "helical_rise": 2.523, "helical_rise_std": 0.334, "helical_radius": 9.461, "helical_radius_std": 0.772, "helical_axis": [ -0.060, -0.819, -0.571 ], "point1": [ 110.760, 249.386, 189.841 ], "point2": [ 109.566, 232.980, 178.392 ], "num_pairs": 9, "pairs": [ { "index": 1, "nt1": "///z/125", "nt2": "///z/323", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.163, -0.170, -0.451, -7.231, 0.317, 0.317 ], "step_params": [ 0.048, -1.649, 3.213, -8.919, 3.855, 30.914 ], "heli_params": [ -3.607, -1.585, 2.867, 7.017, 16.236, 32.370 ], "bp2_params": [ 0.155, -0.213, 0.717, 0.775, -0.946, 0.815 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.213, "simple_Twist": 30.906, "simple_hRise": 2.867, "simple_hTwist": 32.361 }, { "index": 2, "nt1": "///z/126", "nt2": "///z/322", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.155, -0.213, 0.717, 0.775, -0.946, 0.815 ], "step_params": [ -0.059, -1.806, 3.231, 1.625, 1.134, 30.194 ], "heli_params": [ -3.684, 0.433, 3.155, 2.174, -3.115, 30.258 ], "bp2_params": [ -0.055, -0.129, 0.512, 1.860, 1.165, 2.003 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.231, "simple_Twist": 31.460, "simple_hRise": 3.159, "simple_hTwist": 31.521 }, { "index": 3, "nt1": "///z/127", "nt2": "///z/321", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.055, -0.129, 0.512, 1.860, 1.165, 2.003 ], "step_params": [ -0.041, -1.658, 3.415, 0.581, 0.384, 30.141 ], "heli_params": [ -3.269, 0.201, 3.393, 0.739, -1.118, 30.149 ], "bp2_params": [ 0.185, -0.147, 0.281, 3.907, 0.936, 1.883 ], "groove_widths": [ 17.713, null, 18.417, null ], "simple_Rise": 3.415, "simple_Twist": 28.747, "simple_hRise": 3.392, "simple_hTwist": 28.755 }, { "index": 4, "nt1": "///z/128", "nt2": "///z/320", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.147, 0.281, 3.907, 0.936, 1.883 ], "step_params": [ -0.447, -1.801, 3.317, -2.515, 12.342, 35.280 ], "heli_params": [ -4.322, 0.389, 2.589, 19.608, 3.995, 37.393 ], "bp2_params": [ 0.229, -0.183, 0.403, 1.860, 14.924, 2.034 ], "groove_widths": [ 18.444, 16.455, 17.488, 12.750 ], "simple_Rise": 3.317, "simple_Twist": 35.239, "simple_hRise": 2.588, "simple_hTwist": 37.355 }, { "index": 5, "nt1": "///z/129", "nt2": "///z/319", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.229, -0.183, 0.403, 1.860, 14.924, 2.034 ], "step_params": [ 0.139, -3.035, 3.013, 3.937, 20.527, 28.186 ], "heli_params": [ -7.020, 0.146, 0.712, 36.478, -6.997, 34.964 ], "bp2_params": [ 0.142, -0.120, 0.191, 2.151, -2.691, 0.296 ], "groove_widths": [ 18.360, 16.064, 17.383, 12.448 ], "simple_Rise": 3.013, "simple_Twist": 28.284, "simple_hRise": 0.719, "simple_hTwist": 35.042 }, { "index": 6, "nt1": "///z/130", "nt2": "///z/318", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.142, -0.120, 0.191, 2.151, -2.691, 0.296 ], "step_params": [ -0.738, -2.100, 3.454, 2.051, 8.437, 31.399 ], "heli_params": [ -5.172, 1.663, 2.759, 15.228, -3.701, 32.548 ], "bp2_params": [ -0.156, -0.214, -0.865, -7.124, 3.174, -0.165 ], "groove_widths": [ 17.469, null, 17.881, null ], "simple_Rise": 3.454, "simple_Twist": 33.374, "simple_hRise": 2.806, "simple_hTwist": 34.454 }, { "index": 7, "nt1": "///z/131", "nt2": "///z/317", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.156, -0.214, -0.865, -7.124, 3.174, -0.165 ], "step_params": [ 0.038, -1.535, 3.132, -3.325, 9.160, 29.144 ], "heli_params": [ -4.500, -0.652, 2.525, 17.593, 6.386, 30.697 ], "bp2_params": [ -0.188, -0.217, -0.816, -1.576, -2.391, 1.617 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.132, "simple_Twist": 29.331, "simple_hRise": 2.530, "simple_hTwist": 30.873 }, { "index": 8, "nt1": "///z/132", "nt2": "///z/316", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.188, -0.217, -0.816, -1.576, -2.391, 1.617 ], "step_params": [ -1.239, -1.819, 3.511, -5.980, 9.125, 33.662 ], "heli_params": [ -4.393, 1.126, 3.097, 15.266, 10.006, 35.337 ], "bp2_params": [ -0.096, -0.253, -0.940, -7.962, 9.709, -4.522 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.511, "simple_Twist": 33.135, "simple_hRise": 3.088, "simple_hTwist": 34.837 }, { "index": 9, "nt1": "///z/133", "nt2": "///z/315", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 112, "helix_index": 60, "strand1": "AG", "strand2": "UC", "bp_type": "||", "helix_form": ".", "helical_rise": 4.583, "helical_rise_std": 0.021, "helical_radius": 8.745, "helical_radius_std": 0.600, "helical_axis": [ 0.021, -0.971, -0.239 ], "point1": [ 111.927, 233.259, 172.857 ], "point2": [ 112.025, 228.808, 171.763 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///z/134", "nt2": "///z/290", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.191, -0.601, -1.891, -12.917, -8.165, 0.616 ], "step_params": [ -0.190, 0.418, 4.486, -2.960, 1.025, 32.695 ], "heli_params": [ 0.497, -0.362, 4.496, 1.816, 5.242, 32.840 ], "bp2_params": [ -0.069, -0.522, -1.623, -9.335, -0.743, -3.208 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.486, "simple_Twist": 34.654, "simple_hRise": 4.497, "simple_hTwist": 34.791 }, { "index": 2, "nt1": "///z/135", "nt2": "///z/289", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 113, "helix_index": 60, "strand1": "GCCA", "strand2": "UGGU", "bp_type": "||||", "helix_form": "..A", "helical_rise": 2.882, "helical_rise_std": 0.303, "helical_radius": 8.721, "helical_radius_std": 0.905, "helical_axis": [ -0.027, -0.710, -0.704 ], "point1": [ 106.153, 223.733, 168.250 ], "point2": [ 105.921, 217.553, 162.126 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///z/137", "nt2": "///z/287", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.985, -1.605, -2.242, -19.571, -3.823, -6.268 ], "step_params": [ -0.087, -1.095, 3.495, -8.586, 2.450, 42.346 ], "heli_params": [ -1.742, -0.775, 3.383, 3.347, 11.729, 43.235 ], "bp2_params": [ 0.165, -0.367, -1.014, -12.815, 10.284, -5.422 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.495, "simple_Twist": 24.081, "simple_hRise": 3.209, "simple_hTwist": 25.660 }, { "index": 2, "nt1": "///z/138", "nt2": "///z/286", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.367, -1.014, -12.815, 10.284, -5.422 ], "step_params": [ 1.227, -1.689, 3.167, -5.868, 8.406, 35.383 ], "heli_params": [ -3.686, -2.649, 2.486, 13.484, 9.414, 36.792 ], "bp2_params": [ 0.247, -0.134, -0.055, -6.188, 18.127, 0.367 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.167, "simple_Twist": 34.895, "simple_hRise": 2.475, "simple_hTwist": 36.325 }, { "index": 3, "nt1": "///z/139", "nt2": "///z/285", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.247, -0.134, -0.055, -6.188, 18.127, 0.367 ], "step_params": [ -0.184, -1.557, 2.999, 2.376, 25.051, 36.087 ], "heli_params": [ -3.963, 0.424, 1.622, 35.616, -3.378, 43.753 ], "bp2_params": [ 0.030, -0.065, -0.192, -9.666, 2.599, -0.054 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.999, "simple_Twist": 36.651, "simple_hRise": 1.644, "simple_hTwist": 44.212 }, { "index": 4, "nt1": "///z/140", "nt2": "///z/284", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 114, "helix_index": 60, "strand1": "UAGU", "strand2": "AUCG", "bp_type": "||||", "helix_form": ".A.", "helical_rise": 2.849, "helical_rise_std": 0.534, "helical_radius": 9.017, "helical_radius_std": 0.587, "helical_axis": [ 0.026, -0.653, -0.757 ], "point1": [ 106.922, 217.770, 159.305 ], "point2": [ 107.140, 212.274, 152.936 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///z/141", "nt2": "///z/252", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.090, -0.117, -0.357, -6.244, -6.806, -1.300 ], "step_params": [ -1.672, -1.694, 3.398, -14.957, 6.062, 18.965 ], "heli_params": [ -6.031, -1.284, 3.189, 15.292, 37.733, 24.854 ], "bp2_params": [ 0.026, -0.093, 0.217, 1.689, -1.554, -1.188 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.398, "simple_Twist": 18.108, "simple_hRise": 3.154, "simple_hTwist": 24.211 }, { "index": 2, "nt1": "///z/142", "nt2": "///z/251", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.026, -0.093, 0.217, 1.689, -1.554, -1.188 ], "step_params": [ -0.359, -2.042, 3.402, 1.286, 1.550, 36.631 ], "heli_params": [ -3.462, 0.751, 3.302, 2.463, -2.044, 36.685 ], "bp2_params": [ -0.194, -0.163, -0.452, -0.558, -2.197, 1.656 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.402, "simple_Twist": 38.204, "simple_hRise": 3.306, "simple_hTwist": 38.255 }, { "index": 3, "nt1": "///z/143", "nt2": "///z/250", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.194, -0.163, -0.452, -0.558, -2.197, 1.656 ], "step_params": [ 1.844, -1.512, 3.554, 0.401, 1.080, 30.283 ], "heli_params": [ -3.127, -3.440, 3.523, 2.066, -0.767, 30.304 ], "bp2_params": [ 3.309, -0.829, -0.006, 1.072, -1.824, -1.004 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.554, "simple_Twist": 10.863, "simple_hRise": 3.453, "simple_hTwist": 10.924 }, { "index": 4, "nt1": "///z/144", "nt2": "///z/249", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 115, "helix_index": 60, "strand1": "GUCU", "strand2": "CAGA", "bp_type": "||||", "helix_form": "..A", "helical_rise": 2.306, "helical_rise_std": 0.183, "helical_radius": 8.617, "helical_radius_std": 1.025, "helical_axis": [ 0.306, -0.544, -0.781 ], "point1": [ 109.174, 203.649, 150.185 ], "point2": [ 111.227, 199.999, 144.950 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///z/146", "nt2": "///z/247", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.080, -0.333, -1.240, -9.789, 4.423, -3.111 ], "step_params": [ -0.927, -1.508, 3.672, -4.198, 3.381, 29.336 ], "heli_params": [ -3.717, 0.824, 3.575, 6.606, 8.202, 29.817 ], "bp2_params": [ -0.226, -0.452, -1.336, -3.476, 12.937, -7.338 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.672, "simple_Twist": 30.133, "simple_hRise": 3.579, "simple_hTwist": 30.600 }, { "index": 2, "nt1": "///z/147", "nt2": "///z/246", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.226, -0.452, -1.336, -3.476, 12.937, -7.338 ], "step_params": [ 1.245, -1.424, 3.482, 3.146, 17.948, 36.108 ], "heli_params": [ -4.070, -1.455, 2.614, 26.949, -4.724, 40.308 ], "bp2_params": [ 0.195, -0.236, -0.755, -2.757, -1.897, 0.793 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.482, "simple_Twist": 33.871, "simple_hRise": 2.542, "simple_hTwist": 38.335 }, { "index": 3, "nt1": "///z/148", "nt2": "///z/245", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.195, -0.236, -0.755, -2.757, -1.897, 0.793 ], "step_params": [ 0.056, -1.125, 3.527, -1.503, 3.538, 26.147 ], "heli_params": [ -3.454, -0.545, 3.340, 7.767, 3.300, 26.424 ], "bp2_params": [ -0.015, -0.104, 0.060, 0.249, -0.245, 2.310 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.527, "simple_Twist": 27.267, "simple_hRise": 3.349, "simple_hTwist": 27.532 }, { "index": 4, "nt1": "///z/149", "nt2": "///z/244", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 116, "helix_index": 60, "strand1": "GCGG", "strand2": "CGCC", "bp_type": "||||", "helix_form": ".AA", "helical_rise": 2.770, "helical_rise_std": 0.326, "helical_radius": 9.265, "helical_radius_std": 0.503, "helical_axis": [ 0.640, -0.594, -0.488 ], "point1": [ 113.620, 195.909, 140.129 ], "point2": [ 118.867, 191.039, 136.127 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///z/150", "nt2": "///z/242", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.132, -0.349, -1.189, -4.224, -1.397, -0.716 ], "step_params": [ -0.184, -1.543, 3.759, -0.692, 0.491, 31.025 ], "heli_params": [ -2.993, 0.191, 3.738, 0.918, 1.293, 31.036 ], "bp2_params": [ 0.144, -0.298, -1.004, -1.265, 0.293, -0.139 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.759, "simple_Twist": 29.366, "simple_hRise": 3.737, "simple_hTwist": 29.378 }, { "index": 2, "nt1": "///z/151", "nt2": "///z/241", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.144, -0.298, -1.004, -1.265, 0.293, -0.139 ], "step_params": [ 0.448, -1.456, 3.293, -8.536, 11.357, 26.866 ], "heli_params": [ -4.851, -2.411, 2.265, 22.551, 16.949, 30.330 ], "bp2_params": [ -0.202, -0.147, 0.434, 0.345, 5.808, 2.689 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.293, "simple_Twist": 28.943, "simple_hRise": 2.350, "simple_hTwist": 32.175 }, { "index": 3, "nt1": "///z/152", "nt2": "///z/240", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.202, -0.147, 0.434, 0.345, 5.808, 2.689 ], "step_params": [ -0.127, -1.940, 3.612, 1.282, 3.721, 30.597 ], "heli_params": [ -4.422, 0.505, 3.350, 7.016, -2.417, 30.843 ], "bp2_params": [ -0.154, -0.245, 0.971, 6.919, 4.240, 0.610 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.612, "simple_Twist": 30.264, "simple_hRise": 3.347, "simple_hTwist": 30.513 }, { "index": 4, "nt1": "///z/153", "nt2": "///z/239", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 117, "helix_index": 61, "strand1": "CCGGUG", "strand2": "GGCCAC", "bp_type": "||||||", "helix_form": ".A.A.", "helical_rise": 3.216, "helical_rise_std": 0.442, "helical_radius": 10.307, "helical_radius_std": 1.176, "helical_axis": [ 0.524, 0.851, 0.031 ], "point1": [ 119.810, 180.872, 117.344 ], "point2": [ 128.348, 194.752, 117.843 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///z/156", "nt2": "///z/171", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.214, -0.236, 0.731, 4.522, 2.585, 2.142 ], "step_params": [ -0.601, -2.060, 3.254, 0.989, -1.998, 37.185 ], "heli_params": [ -2.958, 1.074, 3.340, -3.130, -1.549, 37.249 ], "bp2_params": [ 0.140, -0.227, 0.673, -0.215, -5.436, -0.690 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.254, "simple_Twist": 37.421, "simple_hRise": 3.339, "simple_hTwist": 37.485 }, { "index": 2, "nt1": "///z/157", "nt2": "///z/170", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.140, -0.227, 0.673, -0.215, -5.436, -0.690 ], "step_params": [ 0.165, -1.681, 2.982, 3.698, 0.753, 29.572 ], "heli_params": [ -3.411, 0.381, 2.938, 1.467, -7.207, 29.807 ], "bp2_params": [ -0.168, -0.150, 0.108, 0.920, -4.968, -0.583 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.982, "simple_Twist": 31.364, "simple_hRise": 2.942, "simple_hTwist": 31.584 }, { "index": 3, "nt1": "///z/158", "nt2": "///z/169", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.168, -0.150, 0.108, 0.920, -4.968, -0.583 ], "step_params": [ -1.316, -2.646, 3.463, -0.812, 2.635, 26.735 ], "heli_params": [ -6.388, 2.617, 3.230, 5.680, 1.751, 26.874 ], "bp2_params": [ -0.162, -0.179, -0.640, -2.314, -3.801, 0.859 ], "groove_widths": [ 16.043, null, 22.916, null ], "simple_Rise": 3.463, "simple_Twist": 26.836, "simple_hRise": 3.231, "simple_hTwist": 26.975 }, { "index": 4, "nt1": "///z/159", "nt2": "///z/168", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.162, -0.179, -0.640, -2.314, -3.801, 0.859 ], "step_params": [ 0.087, -1.995, 3.208, -1.902, 6.980, 29.613 ], "heli_params": [ -5.066, -0.512, 2.668, 13.406, 3.653, 30.465 ], "bp2_params": [ -0.022, -0.113, -0.342, 4.771, 3.024, 0.407 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.208, "simple_Twist": 28.657, "simple_hRise": 2.647, "simple_hTwist": 29.538 }, { "index": 5, "nt1": "///z/160", "nt2": "///z/167", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.022, -0.113, -0.342, 4.771, 3.024, 0.407 ], "step_params": [ -0.425, -1.404, 3.496, -4.168, 33.571, 36.097 ], "heli_params": [ -4.065, 0.217, 1.715, 44.126, 5.479, 49.082 ], "bp2_params": [ -0.202, -0.192, -0.776, -5.110, -5.967, 1.374 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.496, "simple_Twist": 36.997, "simple_hRise": 1.758, "simple_hTwist": 49.728 }, { "index": 6, "nt1": "///z/161", "nt2": "///z/166", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 118, "helix_index": 62, "strand1": "AAU", "strand2": "UUA", "bp_type": "|||", "helix_form": "..", "helical_rise": 3.598, "helical_rise_std": 0.392, "helical_radius": 8.745, "helical_radius_std": 0.444, "helical_axis": [ -0.253, -0.967, 0.026 ], "point1": [ 117.173, 176.655, 111.455 ], "point2": [ 115.383, 169.800, 111.636 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///z/172", "nt2": "///z/227", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.049, -0.127, -0.528, -4.233, -1.718, 1.027 ], "step_params": [ -1.547, -1.425, 3.856, -2.550, 1.179, 29.293 ], "heli_params": [ -3.105, 2.395, 3.914, 2.325, 5.028, 29.425 ], "bp2_params": [ 0.227, -0.404, -1.430, -4.266, 1.330, -5.741 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.856, "simple_Twist": 28.277, "simple_hRise": 3.916, "simple_hTwist": 28.413 }, { "index": 2, "nt1": "///z/173", "nt2": "///z/226", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.227, -0.404, -1.430, -4.266, 1.330, -5.741 ], "step_params": [ -0.010, -0.418, 4.173, -2.147, 1.688, 26.063 ], "heli_params": [ -1.503, -0.717, 4.126, 3.730, 4.744, 26.204 ], "bp2_params": [ -0.120, -0.272, -0.969, 1.103, 2.067, -1.670 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.173, "simple_Twist": 28.109, "simple_hRise": 4.131, "simple_hTwist": 28.238 }, { "index": 3, "nt1": "///z/174", "nt2": "///z/225", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 119, "helix_index": 60, "strand1": "GGGC", "strand2": "CCCG", "bp_type": "||||", "helix_form": "A..", "helical_rise": 4.303, "helical_rise_std": 0.697, "helical_radius": 8.945, "helical_radius_std": 2.294, "helical_axis": [ 0.916, -0.401, -0.001 ], "point1": [ 118.420, 193.640, 132.601 ], "point2": [ 130.568, 188.324, 132.587 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///z/229", "nt2": "///z/238", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.108, -0.351, -1.385, -10.811, -0.777, 0.011 ], "step_params": [ -0.014, -1.525, 3.374, -6.421, 5.792, 23.075 ], "heli_params": [ -5.314, -1.892, 2.814, 13.871, 15.376, 24.622 ], "bp2_params": [ -0.164, -0.176, -0.539, -2.560, -3.696, -0.884 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.374, "simple_Twist": 23.132, "simple_hRise": 2.816, "simple_hTwist": 24.675 }, { "index": 2, "nt1": "///z/230", "nt2": "///z/237", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, -0.176, -0.539, -2.560, -3.696, -0.884 ], "step_params": [ -0.262, -1.598, 3.646, 4.647, 7.160, 39.417 ], "heli_params": [ -3.185, 0.942, 3.268, 10.466, -6.793, 40.294 ], "bp2_params": [ -0.126, -0.274, -1.053, -6.424, 4.447, -2.120 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.646, "simple_Twist": 39.329, "simple_hRise": 3.267, "simple_hTwist": 40.209 }, { "index": 3, "nt1": "///z/231", "nt2": "///z/236", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.126, -0.274, -1.053, -6.424, 4.447, -2.120 ], "step_params": [ 0.909, 0.252, 4.354, -2.907, 4.882, 17.897 ], "heli_params": [ -2.641, -4.820, 4.078, 15.204, 9.052, 18.770 ], "bp2_params": [ 0.230, -0.155, 0.409, 2.609, 5.858, 4.896 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.354, "simple_Twist": 15.659, "simple_hRise": 4.012, "simple_hTwist": 16.652 }, { "index": 4, "nt1": "///z/232", "nt2": "///z/235", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 120, "helix_index": 64, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.038, "helical_rise_std": 0.242, "helical_radius": 9.194, "helical_radius_std": 0.550, "helical_axis": [ 0.948, -0.033, -0.316 ], "point1": [ 95.849, 231.480, 149.657 ], "point2": [ 101.641, 231.281, 147.724 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///z/253", "nt2": "///z/279", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.172, -0.176, 0.322, 0.870, 4.828, -2.338 ], "step_params": [ 0.442, -1.301, 3.067, 1.055, 4.759, 38.935 ], "heli_params": [ -2.458, -0.542, 2.905, 7.106, -1.575, 39.227 ], "bp2_params": [ 0.166, -0.123, 0.154, 7.831, 2.806, 0.605 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.067, "simple_Twist": 37.190, "simple_hRise": 2.896, "simple_hTwist": 37.496 }, { "index": 2, "nt1": "///z/254", "nt2": "///z/278", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.166, -0.123, 0.154, 7.831, 2.806, 0.605 ], "step_params": [ -0.018, -1.706, 2.962, 4.649, 2.950, 29.504 ], "heli_params": [ -3.831, 0.878, 2.747, 5.730, -9.030, 30.002 ], "bp2_params": [ 0.162, -0.114, -0.521, 12.368, -1.395, 0.820 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.962, "simple_Twist": 29.613, "simple_hRise": 2.748, "simple_hTwist": 30.109 }, { "index": 3, "nt1": "///z/255", "nt2": "///z/277", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 121, "helix_index": 63, "strand1": "GU", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.455, "helical_rise_std": 0.028, "helical_radius": 8.693, "helical_radius_std": 1.303, "helical_axis": [ 0.996, -0.031, -0.088 ], "point1": [ 119.588, 229.707, 142.516 ], "point2": [ 123.030, 229.598, 142.213 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///z/261", "nt2": "///z/272", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.262, -0.888, 0.771, -2.463, 1.682 ], "step_params": [ -0.987, -1.637, 3.452, 0.160, 0.705, 49.463 ], "heli_params": [ -2.011, 1.192, 3.427, 0.842, -0.191, 49.468 ], "bp2_params": [ 3.143, -1.283, -1.189, -0.346, -1.690, -16.966 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.452, "simple_Twist": 31.519, "simple_hRise": 3.411, "simple_hTwist": 31.527 }, { "index": 2, "nt1": "///z/262", "nt2": "///z/271", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 122, "helix_index": 65, "strand1": "CCU", "strand2": "GGG", "bp_type": "|||", "helix_form": "..", "helical_rise": 2.785, "helical_rise_std": 0.109, "helical_radius": 9.130, "helical_radius_std": 0.939, "helical_axis": [ -0.584, 0.169, -0.794 ], "point1": [ 127.288, 230.302, 171.934 ], "point2": [ 124.117, 231.219, 167.625 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///z/292", "nt2": "///z/301", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.766, -0.351, 0.396, 2.941, -6.356, -2.709 ], "step_params": [ -0.976, -2.234, 3.496, 0.001, 2.143, 30.607 ], "heli_params": [ -4.664, 1.844, 3.336, 4.053, -0.002, 30.680 ], "bp2_params": [ -0.257, 0.398, -0.652, 2.209, -2.904, -6.461 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.496, "simple_Twist": 27.829, "simple_hRise": 3.318, "simple_hTwist": 27.910 }, { "index": 2, "nt1": "///z/293", "nt2": "///z/300", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.257, 0.398, -0.652, 2.209, -2.904, -6.461 ], "step_params": [ -0.318, -1.418, 3.604, 1.544, 3.319, 39.291 ], "heli_params": [ -2.524, 0.668, 3.464, 4.923, -2.290, 39.455 ], "bp2_params": [ 1.891, -0.214, -1.042, -0.371, -5.094, -10.866 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.604, "simple_Twist": 28.386, "simple_hRise": 3.398, "simple_hTwist": 28.616 }, { "index": 3, "nt1": "///z/294", "nt2": "///z/299", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 123, "helix_index": 65, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.691, "helical_rise_std": 0.005, "helical_radius": 10.218, "helical_radius_std": 1.362, "helical_axis": [ 0.521, 0.278, 0.807 ], "point1": [ 127.663, 230.111, 181.459 ], "point2": [ 129.065, 230.858, 183.631 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///z/303", "nt2": "///z/314", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.171, -0.653, -4.220, 2.197, -0.019 ], "step_params": [ 0.073, -1.671, 3.309, -2.148, 9.148, 31.575 ], "heli_params": [ -4.420, -0.473, 2.721, 16.363, 3.841, 32.910 ], "bp2_params": [ 0.161, -0.198, -0.774, 1.362, -0.369, 1.155 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.309, "simple_Twist": 29.550, "simple_hRise": 2.672, "simple_hTwist": 30.977 }, { "index": 2, "nt1": "///z/304", "nt2": "///z/313", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 124, "helix_index": 65, "strand1": "CGAG", "strand2": "GCUC", "bp_type": "||||", "helix_form": "AA.", "helical_rise": 2.367, "helical_rise_std": 0.507, "helical_radius": 9.165, "helical_radius_std": 0.873, "helical_axis": [ -0.282, -0.069, -0.957 ], "point1": [ 131.926, 235.328, 197.332 ], "point2": [ 129.926, 234.840, 190.551 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///z/308", "nt2": "///z/328", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.157, -0.394, 1.174, 6.189, -0.385, 0.691 ], "step_params": [ -0.964, -1.812, 3.454, 0.829, 23.754, 35.138 ], "heli_params": [ -4.715, 1.415, 1.890, 34.862, -1.217, 42.211 ], "bp2_params": [ -0.204, -0.149, 0.061, -9.716, 10.491, 1.364 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.454, "simple_Twist": 37.159, "simple_hRise": 1.982, "simple_hTwist": 43.883 }, { "index": 2, "nt1": "///z/309", "nt2": "///z/327", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.204, -0.149, 0.061, -9.716, 10.491, 1.364 ], "step_params": [ -1.030, -1.755, 3.313, -5.956, 24.379, 31.126 ], "heli_params": [ -5.047, 0.910, 1.714, 38.545, 9.417, 39.787 ], "bp2_params": [ 0.016, -0.092, -0.255, -8.534, -10.965, -0.343 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.313, "simple_Twist": 29.496, "simple_hRise": 1.626, "simple_hTwist": 38.547 }, { "index": 3, "nt1": "///z/310", "nt2": "///z/326", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.016, -0.092, -0.255, -8.534, -10.965, -0.343 ], "step_params": [ -0.267, -2.735, 4.327, -4.338, -1.914, 22.025 ], "heli_params": [ -6.043, -1.493, 4.513, -4.936, 11.189, 22.524 ], "bp2_params": [ -0.220, -0.198, -1.004, -16.541, -8.514, 1.391 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.327, "simple_Twist": 23.132, "simple_hRise": 4.508, "simple_hTwist": 23.606 }, { "index": 4, "nt1": "///z/311", "nt2": "///z/325", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] } ], "num_isoCanonPairs": 57, "isoCanonPairs": [ { "index": -1, "helix_index": 15, "nt1": "///2/11", "nt2": "///2/1201", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -2, "helix_index": 1, "nt1": "///2/34", "nt2": "///2/521", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -3, "helix_index": 1, "nt1": "///2/40", "nt2": "///2/514", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -4, "helix_index": 0, "nt1": "///2/41", "nt2": "///2/481", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -5, "helix_index": 3, "nt1": "///2/87", "nt2": "///2/500", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -6, "helix_index": 7, "nt1": "///2/110", "nt2": "///2/351", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" }, { "index": -7, "helix_index": 7, "nt1": "///2/112", "nt2": "///2/349", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -8, "helix_index": 10, "nt1": "///2/216", "nt2": "///2/309", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -9, "helix_index": 10, "nt1": "///2/288", "nt2": "///2/295", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -10, "helix_index": 11, "nt1": "///2/312", "nt2": "///2/337", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -11, "helix_index": 4, "nt1": "///2/459", "nt2": "///2/470", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -12, "helix_index": 1, "nt1": "///2/487", "nt2": "///2/512", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -13, "helix_index": 1, "nt1": "///2/495", "nt2": "///2/508", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -14, "helix_index": 18, "nt1": "///2/563", "nt2": "///2/592", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -15, "helix_index": 18, "nt1": "///2/569", "nt2": "///2/581", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -16, "helix_index": 0, "nt1": "///2/656", "nt2": "///2/1156", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" }, { "index": -17, "helix_index": 20, "nt1": "///2/663", "nt2": "///2/1164", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -18, "helix_index": 20, "nt1": "///2/665", "nt2": "///2/1162", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -19, "helix_index": 20, "nt1": "///2/671", "nt2": "///2/1161", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -20, "helix_index": 31, "nt1": "///2/673", "nt2": "///2/1032", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -21, "helix_index": 0, "nt1": "///2/685", "nt2": "///2/917", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -22, "helix_index": 23, "nt1": "///2/752", "nt2": "///2/791", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -23, "helix_index": 24, "nt1": "///2/804", "nt2": "///2/860", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" }, { "index": -24, "helix_index": 24, "nt1": "///2/805", "nt2": "///2/858", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -25, "helix_index": 24, "nt1": "///2/807", "nt2": "///2/856", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -26, "helix_index": 27, "nt1": "///2/874", "nt2": "///2/912", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -27, "helix_index": 27, "nt1": "///2/876", "nt2": "///2/910", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -28, "helix_index": 29, "nt1": "///2/922", "nt2": "///2/1022", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -29, "helix_index": 29, "nt1": "///2/931", "nt2": "///2/1010", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -30, "helix_index": 33, "nt1": "///2/1047", "nt2": "///2/1071", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -31, "helix_index": 0, "nt1": "///2/1085", "nt2": "///2/1861", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -32, "helix_index": 34, "nt1": "///2/1101", "nt2": "///2/1131", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" }, { "index": -33, "helix_index": 34, "nt1": "///2/1113", "nt2": "///2/1120", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -34, "helix_index": 0, "nt1": "///2/1115", "nt2": "///z/136", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -35, "helix_index": 0, "nt1": "///2/1245", "nt2": "///2/1254", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -36, "helix_index": 41, "nt1": "///2/1273", "nt2": "///2/1510", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -37, "helix_index": 42, "nt1": "///2/1287", "nt2": "///2/1314", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -38, "helix_index": 44, "nt1": "///2/1338", "nt2": "///2/1488", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -39, "helix_index": 44, "nt1": "///2/1340", "nt2": "///2/1487", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -40, "helix_index": 45, "nt1": "///2/1347", "nt2": "///2/1382", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -41, "helix_index": 46, "nt1": "///2/1363", "nt2": "///2/1375", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -42, "helix_index": 49, "nt1": "///2/1395", "nt2": "///2/1450", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -43, "helix_index": 49, "nt1": "///2/1399", "nt2": "///2/1447", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -44, "helix_index": 48, "nt1": "///2/1402", "nt2": "///2/1444", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -45, "helix_index": 38, "nt1": "///2/1532", "nt2": "///2/1638", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -46, "helix_index": 0, "nt1": "///2/1550", "nt2": "///2/1582", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -47, "helix_index": 39, "nt1": "///2/1604", "nt2": "///2/1635", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -48, "helix_index": 58, "nt1": "///2/1702", "nt2": "///2/1833", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -49, "helix_index": 58, "nt1": "///2/1708", "nt2": "///2/1826", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -50, "helix_index": 58, "nt1": "///2/1720", "nt2": "///2/1813", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -51, "helix_index": 58, "nt1": "///2/1729", "nt2": "///2/1806", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -52, "helix_index": 58, "nt1": "///2/1736", "nt2": "///2/1798", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -53, "helix_index": 58, "nt1": "///2/1751", "nt2": "///2/1782", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -54, "helix_index": 58, "nt1": "///2/1753", "nt2": "///2/1780", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -55, "helix_index": 57, "nt1": "///2/1760", "nt2": "///2/1772", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -56, "helix_index": 64, "nt1": "///z/280", "nt2": "///z/283", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -57, "helix_index": 60, "nt1": "///z/288", "nt2": "///z/297", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ], "num_coaxStacks": 31, "coaxStacks": [ { "index": 1, "helix_index": 1, "num_stems": 3, "stem_indices": [ 5, 32, 33 ] }, { "index": 2, "helix_index": 2, "num_stems": 2, "stem_indices": [ 6, 7 ] }, { "index": 3, "helix_index": 3, "num_stems": 3, "stem_indices": [ 8, 9, 10 ] }, { "index": 4, "helix_index": 4, "num_stems": 3, "stem_indices": [ 30, 29, 31 ] }, { "index": 5, "helix_index": 5, "num_stems": 2, "stem_indices": [ 11, 27 ] }, { "index": 6, "helix_index": 7, "num_stems": 3, "stem_indices": [ 12, 13, 14 ] }, { "index": 7, "helix_index": 8, "num_stems": 3, "stem_indices": [ 16, 17, 18 ] }, { "index": 8, "helix_index": 9, "num_stems": 3, "stem_indices": [ 15, 19, 20 ] }, { "index": 9, "helix_index": 11, "num_stems": 2, "stem_indices": [ 22, 23 ] }, { "index": 10, "helix_index": 15, "num_stems": 4, "stem_indices": [ 4, 3, 1, 2 ] }, { "index": 11, "helix_index": 17, "num_stems": 2, "stem_indices": [ 35, 36 ] }, { "index": 12, "helix_index": 18, "num_stems": 2, "stem_indices": [ 34, 37 ] }, { "index": 13, "helix_index": 19, "num_stems": 4, "stem_indices": [ 38, 40, 41, 39 ] }, { "index": 14, "helix_index": 20, "num_stems": 2, "stem_indices": [ 64, 65 ] }, { "index": 15, "helix_index": 22, "num_stems": 2, "stem_indices": [ 45, 46 ] }, { "index": 16, "helix_index": 23, "num_stems": 3, "stem_indices": [ 47, 48, 49 ] }, { "index": 17, "helix_index": 26, "num_stems": 2, "stem_indices": [ 52, 53 ] }, { "index": 18, "helix_index": 29, "num_stems": 5, "stem_indices": [ 59, 58, 57, 56, 55 ] }, { "index": 19, "helix_index": 31, "num_stems": 2, "stem_indices": [ 44, 43 ] }, { "index": 20, "helix_index": 34, "num_stems": 5, "stem_indices": [ 69, 68, 67, 66, 70 ] }, { "index": 21, "helix_index": 35, "num_stems": 2, "stem_indices": [ 71, 72 ] }, { "index": 22, "helix_index": 37, "num_stems": 2, "stem_indices": [ 74, 75 ] }, { "index": 23, "helix_index": 38, "num_stems": 3, "stem_indices": [ 78, 77, 76 ] }, { "index": 24, "helix_index": 42, "num_stems": 2, "stem_indices": [ 81, 82 ] }, { "index": 25, "helix_index": 43, "num_stems": 3, "stem_indices": [ 80, 83, 84 ] }, { "index": 26, "helix_index": 48, "num_stems": 3, "stem_indices": [ 89, 90, 91 ] }, { "index": 27, "helix_index": 52, "num_stems": 2, "stem_indices": [ 93, 94 ] }, { "index": 28, "helix_index": 56, "num_stems": 2, "stem_indices": [ 98, 99 ] }, { "index": 29, "helix_index": 58, "num_stems": 10, "stem_indices": [ 109, 108, 107, 106, 105, 104, 103, 102, 101, 100 ] }, { "index": 30, "helix_index": 60, "num_stems": 7, "stem_indices": [ 111, 112, 113, 114, 115, 116, 119 ] }, { "index": 31, "helix_index": 65, "num_stems": 3, "stem_indices": [ 122, 123, 124 ] } ], "num_stacks": 425, "stacks": [ { "index": 1, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/20,///2/21" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/41,///2/485" }, { "index": 3, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/49,///2/472" }, { "index": 4, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/50,///2/51" }, { "index": 5, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/60,///2/61" }, { "index": 6, "num_nts": 2, "nts_short": "GR", "nts_long": "///2/74,///H/159" }, { "index": 7, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/77,///2/78" }, { "index": 8, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/86,///2/87" }, { "index": 9, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/103,///2/356" }, { "index": 10, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/113,///2/293" }, { "index": 11, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/116,///2/117" }, { "index": 12, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/120,///2/121" }, { "index": 13, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/156,///2/157" }, { "index": 14, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/158,///2/159" }, { "index": 15, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/164,///2/165" }, { "index": 16, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/167,///2/168" }, { "index": 17, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/197,///2/198" }, { "index": 18, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/218,///2/219" }, { "index": 19, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/291,///2/292" }, { "index": 20, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/296,///2/297" }, { "index": 21, "num_nts": 2, "nts_short": "UY", "nts_long": "///2/305,///J/55" }, { "index": 22, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/306,///2/308" }, { "index": 23, "num_nts": 2, "nts_short": "GH", "nts_long": "///2/307,///J/44" }, { "index": 24, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/321,///2/322" }, { "index": 25, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/333,///2/334" }, { "index": 26, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/336,///2/337" }, { "index": 27, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/340,///2/341" }, { "index": 28, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/343,///2/344" }, { "index": 29, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/346,///2/347" }, { "index": 30, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/361,///2/1175" }, { "index": 31, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/364,///2/397" }, { "index": 32, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/405,///2/406" }, { "index": 33, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/411,///2/412" }, { "index": 34, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/413,///2/425" }, { "index": 35, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/416,///2/417" }, { "index": 36, "num_nts": 2, "nts_short": "UW", "nts_long": "///2/428,///K/7" }, { "index": 37, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/431,///2/432" }, { "index": 38, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/434,///2/435" }, { "index": 39, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/437,///2/438" }, { "index": 40, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/466,///2/467" }, { "index": 41, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/476,///2/477" }, { "index": 42, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/489,///2/512" }, { "index": 43, "num_nts": 2, "nts_short": "CR", "nts_long": "///2/491,///Z/104" }, { "index": 44, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/492,///2/506" }, { "index": 45, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/493,///2/494" }, { "index": 46, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/495,///2/496" }, { "index": 47, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/508,///2/509" }, { "index": 48, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/516,///2/644" }, { "index": 49, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/526,///2/527" }, { "index": 50, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/529,///2/530" }, { "index": 51, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/540,///2/544" }, { "index": 52, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/541,///2/542" }, { "index": 53, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/546,///2/547" }, { "index": 54, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/553,///2/554" }, { "index": 55, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/566,///2/567" }, { "index": 56, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/572,///2/573" }, { "index": 57, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/579,///2/580" }, { "index": 58, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/581,///2/582" }, { "index": 59, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/585,///2/586" }, { "index": 60, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/591,///2/593" }, { "index": 61, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/594,///2/643" }, { "index": 62, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/595,///2/596" }, { "index": 63, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/600,///2/631" }, { "index": 64, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/615,///2/616" }, { "index": 65, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/618,///2/619" }, { "index": 66, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/622,///2/623" }, { "index": 67, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/629,///2/632" }, { "index": 68, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/656,///2/1154" }, { "index": 69, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/659,///2/663" }, { "index": 70, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/666,///2/1150" }, { "index": 71, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/669,///2/670" }, { "index": 72, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/683,///2/1023" }, { "index": 73, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/696,///2/697" }, { "index": 74, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/729,///2/730" }, { "index": 75, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/731,///2/732" }, { "index": 76, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/743,///2/744" }, { "index": 77, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/749,///2/796" }, { "index": 78, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/751,///2/793" }, { "index": 79, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/752,///2/754" }, { "index": 80, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/791,///2/792" }, { "index": 81, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/799,///2/800" }, { "index": 82, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/816,///2/817" }, { "index": 83, "num_nts": 2, "nts_short": "GR", "nts_long": "///2/821,///K/150" }, { "index": 84, "num_nts": 2, "nts_short": "UF", "nts_long": "///2/823,///Z/64" }, { "index": 85, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/834,///2/841" }, { "index": 86, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/843,///2/844" }, { "index": 87, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/862,///2/863" }, { "index": 88, "num_nts": 2, "nts_short": "AQ", "nts_long": "///2/869,///I/114" }, { "index": 89, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/884,///2/885" }, { "index": 90, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/890,///2/896" }, { "index": 91, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/894,///2/895" }, { "index": 92, "num_nts": 2, "nts_short": "AR", "nts_long": "///2/913,///I/120" }, { "index": 93, "num_nts": 2, "nts_short": "GR", "nts_long": "///2/921,///X/28" }, { "index": 94, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/985,///2/1002" }, { "index": 95, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/990,///2/992" }, { "index": 96, "num_nts": 2, "nts_short": "GR", "nts_long": "///2/991,///b/95" }, { "index": 97, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/995,///2/999" }, { "index": 98, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1003,///2/1004" }, { "index": 99, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1007,///2/1008" }, { "index": 100, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1017,///2/1018" }, { "index": 101, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1021,///2/1022" }, { "index": 102, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/1086,///2/1088" }, { "index": 103, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/1094,///2/1095" }, { "index": 104, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/1109,///2/1110" }, { "index": 105, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1111,///2/1112" }, { "index": 106, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1129,///2/1130" }, { "index": 107, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1136,///2/1137" }, { "index": 108, "num_nts": 2, "nts_short": "CR", "nts_long": "///2/1138,///W/61" }, { "index": 109, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1141,///2/1142" }, { "index": 110, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/1149,///2/1151" }, { "index": 111, "num_nts": 2, "nts_short": "GR", "nts_long": "///2/1157,///Y/5" }, { "index": 112, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1166,///2/1194" }, { "index": 113, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1179,///2/1183" }, { "index": 114, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1195,///2/1196" }, { "index": 115, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1199,///2/1200" }, { "index": 116, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1206,///2/1834" }, { "index": 117, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1214,///2/1217" }, { "index": 118, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/1215,///2/1645" }, { "index": 119, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1225,///2/1226" }, { "index": 120, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1227,///2/1638" }, { "index": 121, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1235,///2/1236" }, { "index": 122, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1240,///2/1241" }, { "index": 123, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1242,///2/1520" }, { "index": 124, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1249,///2/1250" }, { "index": 125, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1258,///2/1663" }, { "index": 126, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/1272,///2/1273" }, { "index": 127, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/1276,///2/1277" }, { "index": 128, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1281,///2/1282" }, { "index": 129, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/1291,///2/1302" }, { "index": 130, "num_nts": 2, "nts_short": "CY", "nts_long": "///2/1292,///g/140" }, { "index": 131, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1296,///2/1297" }, { "index": 132, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/1309,///2/1310" }, { "index": 133, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1315,///2/1316" }, { "index": 134, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1325,///2/1327" }, { "index": 135, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1326,///2/1494" }, { "index": 136, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1329,///2/1493" }, { "index": 137, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/1345,///2/1346" }, { "index": 138, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1347,///2/1348" }, { "index": 139, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/1353,///2/1354" }, { "index": 140, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1358,///2/1359" }, { "index": 141, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/1361,///2/1362" }, { "index": 142, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1364,///2/1365" }, { "index": 143, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/1383,///2/1384" }, { "index": 144, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1392,///2/1479" }, { "index": 145, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1395,///2/1396" }, { "index": 146, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1402,///2/1405" }, { "index": 147, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1404,///2/1581" }, { "index": 148, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1409,///2/1438" }, { "index": 149, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1413,///2/1429" }, { "index": 150, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/1416,///2/1417" }, { "index": 151, "num_nts": 2, "nts_short": "UQ", "nts_long": "///2/1442,///R/11" }, { "index": 152, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/1443,///2/1444" }, { "index": 153, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1445,///2/1446" }, { "index": 154, "num_nts": 2, "nts_short": "AR", "nts_long": "///2/1454,///S/3" }, { "index": 155, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1461,///2/1466" }, { "index": 156, "num_nts": 2, "nts_short": "GF", "nts_long": "///2/1497,///L/62" }, { "index": 157, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1504,///2/1505" }, { "index": 158, "num_nts": 2, "nts_short": "CR", "nts_long": "///2/1523,///T/141" }, { "index": 159, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/1534,///2/1536" }, { "index": 160, "num_nts": 2, "nts_short": "CH", "nts_long": "///2/1544,///R/77" }, { "index": 161, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/1554,///2/1555" }, { "index": 162, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1566,///2/1570" }, { "index": 163, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/1571,///2/1572" }, { "index": 164, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/1597,///2/1598" }, { "index": 165, "num_nts": 2, "nts_short": "GF", "nts_long": "///2/1603,///T/28" }, { "index": 166, "num_nts": 2, "nts_short": "UY", "nts_long": "///2/1621,///Q/115" }, { "index": 167, "num_nts": 2, "nts_short": "AR", "nts_long": "///2/1623,///T/132" }, { "index": 168, "num_nts": 2, "nts_short": "GR", "nts_long": "///2/1648,///R/125" }, { "index": 169, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1650,///2/1651" }, { "index": 170, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/1661,///2/1662" }, { "index": 171, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/1664,///2/1666" }, { "index": 172, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1667,///2/1668" }, { "index": 173, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1681,///2/1682" }, { "index": 174, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1691,///2/1692" }, { "index": 175, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/1693,///2/1694" }, { "index": 176, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1758,///2/1759" }, { "index": 177, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/1760,///2/1761" }, { "index": 178, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/1785,///2/1786" }, { "index": 179, "num_nts": 2, "nts_short": "AC", "nts_long": "///2/1793,///2/1794" }, { "index": 180, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1803,///2/1804" }, { "index": 181, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/1811,///2/1812" }, { "index": 182, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1822,///2/1823" }, { "index": 183, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/1829,///2/1830" }, { "index": 184, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1835,///2/1863" }, { "index": 185, "num_nts": 2, "nts_short": "CW", "nts_long": "///2/1852,///n/5" }, { "index": 186, "num_nts": 2, "nts_short": "AR", "nts_long": "///2/1866,///b/87" }, { "index": 187, "num_nts": 2, "nts_short": "RG", "nts_long": "///c/80,///z/233" }, { "index": 188, "num_nts": 2, "nts_short": "GA", "nts_long": "///z/133,///z/134" }, { "index": 189, "num_nts": 2, "nts_short": "GU", "nts_long": "///z/135,///z/297" }, { "index": 190, "num_nts": 2, "nts_short": "AU", "nts_long": "///z/140,///z/141" }, { "index": 191, "num_nts": 2, "nts_short": "AC", "nts_long": "///z/155,///z/156" }, { "index": 192, "num_nts": 2, "nts_short": "AG", "nts_long": "///z/162,///z/163" }, { "index": 193, "num_nts": 2, "nts_short": "GA", "nts_long": "///z/171,///z/172" }, { "index": 194, "num_nts": 2, "nts_short": "GA", "nts_long": "///z/224,///z/225" }, { "index": 195, "num_nts": 2, "nts_short": "GC", "nts_long": "///z/229,///z/239" }, { "index": 196, "num_nts": 2, "nts_short": "UG", "nts_long": "///z/234,///z/235" }, { "index": 197, "num_nts": 2, "nts_short": "CA", "nts_long": "///z/242,///z/243" }, { "index": 198, "num_nts": 2, "nts_short": "CU", "nts_long": "///z/247,///z/248" }, { "index": 199, "num_nts": 2, "nts_short": "AU", "nts_long": "///z/252,///z/284" }, { "index": 200, "num_nts": 2, "nts_short": "GG", "nts_long": "///z/253,///z/283" }, { "index": 201, "num_nts": 2, "nts_short": "CG", "nts_long": "///z/255,///z/256" }, { "index": 202, "num_nts": 2, "nts_short": "UG", "nts_long": "///z/262,///z/263" }, { "index": 203, "num_nts": 2, "nts_short": "GC", "nts_long": "///z/268,///z/270" }, { "index": 204, "num_nts": 2, "nts_short": "UC", "nts_long": "///z/290,///z/315" }, { "index": 205, "num_nts": 2, "nts_short": "GU", "nts_long": "///z/301,///z/302" }, { "index": 206, "num_nts": 2, "nts_short": "CU", "nts_long": "///z/304,///z/305" }, { "index": 207, "num_nts": 2, "nts_short": "GC", "nts_long": "///z/307,///z/308" }, { "index": 208, "num_nts": 3, "nts_short": "AGC", "nts_long": "///2/22,///2/23,///2/24" }, { "index": 209, "num_nts": 3, "nts_short": "AAU", "nts_long": "///2/25,///2/650,///2/651" }, { "index": 210, "num_nts": 3, "nts_short": "CUU", "nts_long": "///2/30,///2/31,///2/32" }, { "index": 211, "num_nts": 3, "nts_short": "UAC", "nts_long": "///2/44,///2/484,///2/483" }, { "index": 212, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/56,///2/90,///2/91" }, { "index": 213, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/58,///2/500,///2/88" }, { "index": 214, "num_nts": 3, "nts_short": "AGU", "nts_long": "///2/64,///2/82,///2/81" }, { "index": 215, "num_nts": 3, "nts_short": "CGR", "nts_long": "///2/69,///2/70,///H/170" }, { "index": 216, "num_nts": 3, "nts_short": "AUC", "nts_long": "///2/104,///2/105,///2/106" }, { "index": 217, "num_nts": 3, "nts_short": "GUC", "nts_long": "///2/123,///2/124,///2/125" }, { "index": 218, "num_nts": 3, "nts_short": "UGC", "nts_long": "///2/128,///2/215,///2/216" }, { "index": 219, "num_nts": 3, "nts_short": "AUG", "nts_long": "///2/175,///2/176,///2/177" }, { "index": 220, "num_nts": 3, "nts_short": "GGG", "nts_long": "///2/183,///2/184,///2/185" }, { "index": 221, "num_nts": 3, "nts_short": "GAG", "nts_long": "///2/225,///2/224,///2/298" }, { "index": 222, "num_nts": 3, "nts_short": "ACC", "nts_long": "///2/302,///2/303,///2/304" }, { "index": 223, "num_nts": 3, "nts_short": "CGG", "nts_long": "///2/323,///2/329,///2/330" }, { "index": 224, "num_nts": 3, "nts_short": "AAC", "nts_long": "///2/348,///2/349,///2/350" }, { "index": 225, "num_nts": 3, "nts_short": "GUC", "nts_long": "///2/351,///2/352,///2/353" }, { "index": 226, "num_nts": 3, "nts_short": "ACG", "nts_long": "///2/360,///2/362,///2/403" }, { "index": 227, "num_nts": 3, "nts_short": "AAC", "nts_long": "///2/439,///2/455,///2/456" }, { "index": 228, "num_nts": 3, "nts_short": "CUG", "nts_long": "///2/442,///2/443,///2/444" }, { "index": 229, "num_nts": 3, "nts_short": "GAG", "nts_long": "///2/451,///2/54,///2/474" }, { "index": 230, "num_nts": 3, "nts_short": "CCA", "nts_long": "///2/462,///2/463,///2/465" }, { "index": 231, "num_nts": 3, "nts_short": "CGG", "nts_long": "///2/501,///2/499,///2/504" }, { "index": 232, "num_nts": 3, "nts_short": "GAC", "nts_long": "///2/535,///2/536,///2/537" }, { "index": 233, "num_nts": 3, "nts_short": "AGC", "nts_long": "///2/599,///2/606,///2/608" }, { "index": 234, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/601,///2/602,///2/603" }, { "index": 235, "num_nts": 3, "nts_short": "AAF", "nts_long": "///2/605,///2/604,///K/20" }, { "index": 236, "num_nts": 3, "nts_short": "GUG", "nts_long": "///2/611,///2/612,///2/613" }, { "index": 237, "num_nts": 3, "nts_short": "GCU", "nts_long": "///2/635,///2/636,///2/637" }, { "index": 238, "num_nts": 3, "nts_short": "AAU", "nts_long": "///2/640,///2/641,///2/642" }, { "index": 239, "num_nts": 3, "nts_short": "CUG", "nts_long": "///2/660,///2/661,///2/662" }, { "index": 240, "num_nts": 3, "nts_short": "UAG", "nts_long": "///2/678,///2/1028,///2/1029" }, { "index": 241, "num_nts": 3, "nts_short": "GAA", "nts_long": "///2/680,///2/679,///2/1027" }, { "index": 242, "num_nts": 3, "nts_short": "UUG", "nts_long": "///2/688,///2/689,///2/690" }, { "index": 243, "num_nts": 3, "nts_short": "UAG", "nts_long": "///2/822,///2/827,///2/828" }, { "index": 244, "num_nts": 3, "nts_short": "CAA", "nts_long": "///2/824,///2/825,///2/826" }, { "index": 245, "num_nts": 3, "nts_short": "AAC", "nts_long": "///2/919,///2/1020,///2/1019" }, { "index": 246, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/924,///2/925,///2/926" }, { "index": 247, "num_nts": 3, "nts_short": "AUU", "nts_long": "///2/938,///2/939,///2/940" }, { "index": 248, "num_nts": 3, "nts_short": "GAA", "nts_long": "///2/961,///2/962,///2/963" }, { "index": 249, "num_nts": 3, "nts_short": "AUU", "nts_long": "///2/964,///2/965,///2/966" }, { "index": 250, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/993,///2/933,///2/1001" }, { "index": 251, "num_nts": 3, "nts_short": "AAA", "nts_long": "///2/996,///2/997,///2/998" }, { "index": 252, "num_nts": 3, "nts_short": "AAU", "nts_long": "///2/1011,///2/1012,///2/1013" }, { "index": 253, "num_nts": 3, "nts_short": "AGG", "nts_long": "///2/1042,///2/1043,///2/1044" }, { "index": 254, "num_nts": 3, "nts_short": "AGA", "nts_long": "///2/1083,///2/1861,///2/1087" }, { "index": 255, "num_nts": 3, "nts_short": "AGG", "nts_long": "///2/1093,///2/1092,///2/1158" }, { "index": 256, "num_nts": 3, "nts_short": "AGA", "nts_long": "///2/1113,///2/1121,///2/1122" }, { "index": 257, "num_nts": 3, "nts_short": "UUG", "nts_long": "///2/1115,///2/1114,///z/295" }, { "index": 258, "num_nts": 3, "nts_short": "UAG", "nts_long": "///2/1120,///2/1119,///z/266" }, { "index": 259, "num_nts": 3, "nts_short": "UCC", "nts_long": "///2/1161,///2/1162,///2/1163" }, { "index": 260, "num_nts": 3, "nts_short": "GGU", "nts_long": "///2/1171,///2/1187,///2/1186" }, { "index": 261, "num_nts": 3, "nts_short": "CAA", "nts_long": "///2/1180,///2/1181,///2/1182" }, { "index": 262, "num_nts": 3, "nts_short": "UGG", "nts_long": "///2/1203,///2/1204,///2/1205" }, { "index": 263, "num_nts": 3, "nts_short": "UCG", "nts_long": "///2/1232,///2/1231,///2/1665" }, { "index": 264, "num_nts": 3, "nts_short": "CUU", "nts_long": "///2/1237,///2/1238,///2/1239" }, { "index": 265, "num_nts": 3, "nts_short": "CAC", "nts_long": "///2/1247,///2/1251,///2/1252" }, { "index": 266, "num_nts": 3, "nts_short": "AAA", "nts_long": "///2/1284,///2/1313,///2/1287" }, { "index": 267, "num_nts": 3, "nts_short": "CAR", "nts_long": "///2/1331,///2/1489,///E/146" }, { "index": 268, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/1351,///2/1352,///2/1378" }, { "index": 269, "num_nts": 3, "nts_short": "GUU", "nts_long": "///2/1366,///2/1367,///2/1368" }, { "index": 270, "num_nts": 3, "nts_short": "CGA", "nts_long": "///2/1380,///2/1381,///2/1382" }, { "index": 271, "num_nts": 3, "nts_short": "GGU", "nts_long": "///2/1394,///2/1393,///2/1478" }, { "index": 272, "num_nts": 3, "nts_short": "UGQ", "nts_long": "///2/1496,///2/1495,///e/41" }, { "index": 273, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/1516,///2/1517,///2/1518" }, { "index": 274, "num_nts": 3, "nts_short": "ACU", "nts_long": "///2/1537,///2/1538,///2/1539" }, { "index": 275, "num_nts": 3, "nts_short": "GCU", "nts_long": "///2/1541,///2/1542,///2/1543" }, { "index": 276, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/1562,///2/1561,///2/1575" }, { "index": 277, "num_nts": 3, "nts_short": "GCR", "nts_long": "///2/1563,///2/1564,///U/101" }, { "index": 278, "num_nts": 3, "nts_short": "CGW", "nts_long": "///2/1568,///2/1567,///T/82" }, { "index": 279, "num_nts": 3, "nts_short": "GUU", "nts_long": "///2/1577,///2/1551,///2/1578" }, { "index": 280, "num_nts": 3, "nts_short": "CGU", "nts_long": "///2/1583,///2/1584,///2/1586" }, { "index": 281, "num_nts": 3, "nts_short": "AUU", "nts_long": "///2/1594,///2/1595,///2/1596" }, { "index": 282, "num_nts": 3, "nts_short": "UGU", "nts_long": "///2/1599,///2/1600,///2/1602" }, { "index": 283, "num_nts": 3, "nts_short": "UUG", "nts_long": "///2/1615,///2/1616,///2/1617" }, { "index": 284, "num_nts": 3, "nts_short": "GAA", "nts_long": "///2/1639,///2/1640,///2/1641" }, { "index": 285, "num_nts": 3, "nts_short": "CAA", "nts_long": "///2/1646,///2/1678,///2/1679" }, { "index": 286, "num_nts": 3, "nts_short": "GGG", "nts_long": "///2/1657,///2/1656,///2/1669" }, { "index": 287, "num_nts": 3, "nts_short": "GUC", "nts_long": "///2/1658,///2/1659,///2/1660" }, { "index": 288, "num_nts": 3, "nts_short": "CCU", "nts_long": "///2/1683,///2/1684,///2/1685" }, { "index": 289, "num_nts": 3, "nts_short": "GUC", "nts_long": "///2/1706,///2/1707,///2/1708" }, { "index": 290, "num_nts": 3, "nts_short": "UAC", "nts_long": "///2/1714,///2/1715,///2/1716" }, { "index": 291, "num_nts": 3, "nts_short": "GUU", "nts_long": "///2/1727,///2/1728,///2/1729" }, { "index": 292, "num_nts": 3, "nts_short": "UCG", "nts_long": "///2/1741,///2/1740,///2/1795" }, { "index": 293, "num_nts": 3, "nts_short": "GGG", "nts_long": "///2/1749,///2/1748,///2/1787" }, { "index": 294, "num_nts": 3, "nts_short": "CCU", "nts_long": "///2/1773,///2/1774,///2/1775" }, { "index": 295, "num_nts": 3, "nts_short": "CGG", "nts_long": "///2/1778,///2/1779,///2/1780" }, { "index": 296, "num_nts": 3, "nts_short": "GGU", "nts_long": "///2/1846,///2/1847,///2/1848" }, { "index": 297, "num_nts": 3, "nts_short": "GAA", "nts_long": "///2/1849,///2/1850,///2/1851" }, { "index": 298, "num_nts": 3, "nts_short": "RUG", "nts_long": "///d/31,///z/329,///z/328" }, { "index": 299, "num_nts": 3, "nts_short": "GAC", "nts_long": "///z/137,///z/288,///z/289" }, { "index": 300, "num_nts": 3, "nts_short": "GGG", "nts_long": "///z/146,///z/145,///z/249" }, { "index": 301, "num_nts": 3, "nts_short": "GGG", "nts_long": "///z/258,///z/273,///z/261" }, { "index": 302, "num_nts": 3, "nts_short": "CCU", "nts_long": "///z/279,///z/280,///z/282" }, { "index": 303, "num_nts": 3, "nts_short": "CGG", "nts_long": "///z/292,///z/291,///z/303" }, { "index": 304, "num_nts": 3, "nts_short": "GUG", "nts_long": "///z/311,///z/312,///z/313" }, { "index": 305, "num_nts": 4, "nts_short": "UAAU", "nts_long": "///2/43,///2/42,///2/426,///2/427" }, { "index": 306, "num_nts": 4, "nts_short": "GGCG", "nts_long": "///2/47,///2/480,///2/481,///2/482" }, { "index": 307, "num_nts": 4, "nts_short": "CGAG", "nts_long": "///2/72,///2/71,///2/79,///2/80" }, { "index": 308, "num_nts": 4, "nts_short": "UGGC", "nts_long": "///2/93,///2/94,///2/95,///2/96" }, { "index": 309, "num_nts": 4, "nts_short": "UGUG", "nts_long": "///2/152,///2/153,///2/154,///2/155" }, { "index": 310, "num_nts": 4, "nts_short": "CAAU", "nts_long": "///2/192,///2/191,///2/209,///2/210" }, { "index": 311, "num_nts": 4, "nts_short": "GCGG", "nts_long": "///2/200,///2/201,///2/202,///2/203" }, { "index": 312, "num_nts": 4, "nts_short": "AGCC", "nts_long": "///2/217,///2/309,///2/310,///2/311" }, { "index": 313, "num_nts": 4, "nts_short": "UGGU", "nts_long": "///2/287,///2/288,///2/289,///2/290" }, { "index": 314, "num_nts": 4, "nts_short": "UGGA", "nts_long": "///2/314,///2/312,///2/338,///2/339" }, { "index": 315, "num_nts": 4, "nts_short": "UAGG", "nts_long": "///2/367,///2/371,///2/370,///2/385" }, { "index": 316, "num_nts": 4, "nts_short": "GUCG", "nts_long": "///2/377,///2/378,///2/379,///2/380" }, { "index": 317, "num_nts": 4, "nts_short": "GUCC", "nts_long": "///2/383,///2/384,///2/386,///2/387" }, { "index": 318, "num_nts": 4, "nts_short": "AAAC", "nts_long": "///2/398,///2/363,///2/401,///2/402" }, { "index": 319, "num_nts": 4, "nts_short": "GACA", "nts_long": "///2/436,///2/458,///2/459,///2/460" }, { "index": 320, "num_nts": 4, "nts_short": "AAGG", "nts_long": "///2/468,///2/469,///2/470,///2/471" }, { "index": 321, "num_nts": 4, "nts_short": "AAAA", "nts_long": "///2/519,///2/520,///2/521,///2/522" }, { "index": 322, "num_nts": 4, "nts_short": "GGCG", "nts_long": "///2/617,///2/625,///2/614,///2/626" }, { "index": 323, "num_nts": 4, "nts_short": "AAAU", "nts_long": "///2/653,///2/654,///2/655,///2/657" }, { "index": 324, "num_nts": 4, "nts_short": "CGAU", "nts_long": "///2/674,///2/673,///2/1084,///2/1081" }, { "index": 325, "num_nts": 4, "nts_short": "CGCU", "nts_long": "///2/676,///2/677,///2/1026,///2/1025" }, { "index": 326, "num_nts": 4, "nts_short": "CRUU", "nts_long": "///2/687,///I/118,///2/917,///2/918" }, { "index": 327, "num_nts": 4, "nts_short": "GAGC", "nts_long": "///2/692,///2/693,///2/694,///2/695" }, { "index": 328, "num_nts": 4, "nts_short": "AAAU", "nts_long": "///2/811,///2/812,///2/813,///2/814" }, { "index": 329, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///2/819,///2/818,///2/847,///2/848" }, { "index": 330, "num_nts": 4, "nts_short": "GAGG", "nts_long": "///2/831,///2/830,///2/845,///2/846" }, { "index": 331, "num_nts": 4, "nts_short": "GGAR", "nts_long": "///2/859,///2/860,///2/861,///I/106" }, { "index": 332, "num_nts": 4, "nts_short": "AUGG", "nts_long": "///2/865,///2/866,///2/867,///2/868" }, { "index": 333, "num_nts": 4, "nts_short": "GGAG", "nts_long": "///2/935,///2/934,///2/1009,///2/1010" }, { "index": 334, "num_nts": 4, "nts_short": "GUAU", "nts_long": "///2/942,///2/943,///2/944,///2/945" }, { "index": 335, "num_nts": 4, "nts_short": "AACC", "nts_long": "///2/955,///2/972,///2/973,///2/974" }, { "index": 336, "num_nts": 4, "nts_short": "AGGU", "nts_long": "///2/957,///2/958,///2/959,///2/960" }, { "index": 337, "num_nts": 4, "nts_short": "AGAC", "nts_long": "///2/981,///2/982,///2/983,///2/984" }, { "index": 338, "num_nts": 4, "nts_short": "GACC", "nts_long": "///2/986,///2/987,///2/988,///2/989" }, { "index": 339, "num_nts": 4, "nts_short": "GAUC", "nts_long": "///2/1054,///2/1055,///2/1056,///2/1057" }, { "index": 340, "num_nts": 4, "nts_short": "UAGG", "nts_long": "///2/1101,///2/1100,///2/1099,///2/1134" }, { "index": 341, "num_nts": 4, "nts_short": "GGAU", "nts_long": "///2/1168,///2/1169,///2/1170,///2/1172" }, { "index": 342, "num_nts": 4, "nts_short": "UAGC", "nts_long": "///2/1201,///2/1357,///2/1356,///2/1355" }, { "index": 343, "num_nts": 4, "nts_short": "CCAG", "nts_long": "///2/1218,///2/1219,///2/1220,///2/1221" }, { "index": 344, "num_nts": 4, "nts_short": "AACA", "nts_long": "///2/1228,///2/1531,///2/1532,///2/1637" }, { "index": 345, "num_nts": 4, "nts_short": "GGCG", "nts_long": "///2/1233,///2/1526,///2/1527,///2/1528" }, { "index": 346, "num_nts": 4, "nts_short": "UACU", "nts_long": "///2/1243,///2/1265,///2/1264,///2/1263" }, { "index": 347, "num_nts": 4, "nts_short": "AGGG", "nts_long": "///2/1246,///2/1245,///2/1255,///2/1257" }, { "index": 348, "num_nts": 4, "nts_short": "CGGC", "nts_long": "///2/1268,///2/1269,///2/1270,///2/1271" }, { "index": 349, "num_nts": 4, "nts_short": "GGUU", "nts_long": "///2/1286,///2/1312,///2/1288,///2/1289" }, { "index": 350, "num_nts": 4, "nts_short": "GUUU", "nts_long": "///2/1294,///2/1306,///2/1307,///2/1308" }, { "index": 351, "num_nts": 4, "nts_short": "GAAC", "nts_long": "///2/1298,///2/1299,///2/1301,///2/1303" }, { "index": 352, "num_nts": 4, "nts_short": "GGGU", "nts_long": "///2/1320,///2/1321,///2/1322,///2/1323" }, { "index": 353, "num_nts": 4, "nts_short": "GGAU", "nts_long": "///2/1335,///2/1334,///2/1498,///2/1499" }, { "index": 354, "num_nts": 4, "nts_short": "UACG", "nts_long": "///2/1342,///2/1483,///2/1482,///2/1481" }, { "index": 355, "num_nts": 4, "nts_short": "AAUC", "nts_long": "///2/1369,///2/1370,///2/1372,///2/1373" }, { "index": 356, "num_nts": 4, "nts_short": "CGAU", "nts_long": "///2/1374,///2/1375,///2/1376,///2/1377" }, { "index": 357, "num_nts": 4, "nts_short": "GCUA", "nts_long": "///2/1398,///2/1399,///2/1400,///2/1401" }, { "index": 358, "num_nts": 4, "nts_short": "GURG", "nts_long": "///2/1428,///2/1585,///U/67,///2/1587" }, { "index": 359, "num_nts": 4, "nts_short": "GCCG", "nts_long": "///2/1456,///2/1471,///2/1472,///2/1473" }, { "index": 360, "num_nts": 4, "nts_short": "AUGU", "nts_long": "///2/1647,///2/1649,///2/1674,///2/1673" }, { "index": 361, "num_nts": 4, "nts_short": "CGCC", "nts_long": "///2/1700,///2/1702,///2/1703,///2/1704" }, { "index": 362, "num_nts": 4, "nts_short": "CGGU", "nts_long": "///2/1710,///2/1709,///2/1826,///2/1827" }, { "index": 363, "num_nts": 4, "nts_short": "UAAG", "nts_long": "///2/1720,///2/1719,///2/1815,///2/1816" }, { "index": 364, "num_nts": 4, "nts_short": "CCGG", "nts_long": "///2/1753,///2/1752,///2/1782,///2/1784" }, { "index": 365, "num_nts": 4, "nts_short": "GAAG", "nts_long": "///2/1817,///2/1818,///2/1819,///2/1820" }, { "index": 366, "num_nts": 4, "nts_short": "AGUR", "nts_long": "///2/1860,///2/1862,///2/1864,///b/5" }, { "index": 367, "num_nts": 4, "nts_short": "YUAC", "nts_long": "///c/41,///z/164,///z/165,///z/238" }, { "index": 368, "num_nts": 4, "nts_short": "AAAG", "nts_long": "///z/136,///z/296,///z/298,///z/299" }, { "index": 369, "num_nts": 4, "nts_short": "UAAG", "nts_long": "///z/259,///z/275,///z/276,///z/277" }, { "index": 370, "num_nts": 5, "nts_short": "UAGAC", "nts_long": "///2/12,///2/11,///2/10,///2/1697,///2/1696" }, { "index": 371, "num_nts": 5, "nts_short": "CUGAU", "nts_long": "///2/35,///2/34,///2/33,///2/523,///2/524" }, { "index": 372, "num_nts": 5, "nts_short": "AGAAA", "nts_long": "///2/68,///2/66,///2/83,///2/84,///2/85" }, { "index": 373, "num_nts": 5, "nts_short": "GUUAU", "nts_long": "///2/108,///2/109,///2/110,///2/111,///2/112" }, { "index": 374, "num_nts": 5, "nts_short": "GGAUU", "nts_long": "///2/145,///2/146,///2/147,///2/148,///2/169" }, { "index": 375, "num_nts": 5, "nts_short": "GGGUG", "nts_long": "///2/207,///2/208,///2/190,///2/189,///2/211" }, { "index": 376, "num_nts": 5, "nts_short": "CACGG", "nts_long": "///2/319,///2/318,///2/317,///2/316,///2/335" }, { "index": 377, "num_nts": 5, "nts_short": "AAACG", "nts_long": "///2/486,///2/40,///2/39,///2/517,///2/518" }, { "index": 378, "num_nts": 5, "nts_short": "UGGAA", "nts_long": "///2/557,///2/558,///2/559,///2/560,///2/561" }, { "index": 379, "num_nts": 5, "nts_short": "AAAUC", "nts_long": "///2/574,///2/575,///2/576,///2/577,///2/578" }, { "index": 380, "num_nts": 5, "nts_short": "ACUUU", "nts_long": "///2/802,///2/803,///2/804,///2/805,///2/806" }, { "index": 381, "num_nts": 5, "nts_short": "GCAGC", "nts_long": "///2/852,///2/853,///2/854,///2/855,///2/856" }, { "index": 382, "num_nts": 5, "nts_short": "UUUCG", "nts_long": "///2/897,///2/898,///2/899,///2/900,///2/901" }, { "index": 383, "num_nts": 5, "nts_short": "GCUGU", "nts_long": "///2/952,///2/953,///2/954,///2/971,///2/969" }, { "index": 384, "num_nts": 5, "nts_short": "ACGAC", "nts_long": "///2/1031,///2/1032,///2/1033,///2/1080,///2/1079" }, { "index": 385, "num_nts": 5, "nts_short": "GAAAA", "nts_long": "///2/1037,///2/1036,///2/1035,///2/1034,///2/1082" }, { "index": 386, "num_nts": 5, "nts_short": "GGACG", "nts_long": "///2/1097,///2/1096,///2/1148,///2/1139,///2/1140" }, { "index": 387, "num_nts": 5, "nts_short": "CGGCA", "nts_long": "///2/1103,///2/1102,///2/1131,///2/1132,///2/1133" }, { "index": 388, "num_nts": 5, "nts_short": "GAGAC", "nts_long": "///2/1385,///2/1386,///2/1387,///2/1388,///2/1389" }, { "index": 389, "num_nts": 5, "nts_short": "GAGGG", "nts_long": "///2/1447,///2/1448,///2/1449,///2/1450,///2/1451" }, { "index": 390, "num_nts": 5, "nts_short": "ACAGA", "nts_long": "///2/1455,///2/1453,///2/1452,///2/1475,///2/1474" }, { "index": 391, "num_nts": 5, "nts_short": "AUAAC", "nts_long": "///2/1484,///2/1485,///2/1486,///2/1487,///2/1488" }, { "index": 392, "num_nts": 5, "nts_short": "UGUAG", "nts_long": "///2/1492,///2/1330,///2/1333,///2/1332,///2/1500" }, { "index": 393, "num_nts": 5, "nts_short": "AUGAC", "nts_long": "///2/1731,///2/1730,///2/1805,///2/1806,///2/1807" }, { "index": 394, "num_nts": 5, "nts_short": "CGGGA", "nts_long": "///2/1742,///2/1743,///2/1744,///2/1789,///2/1788" }, { "index": 395, "num_nts": 5, "nts_short": "UAAAG", "nts_long": "///2/1746,///2/1745,///2/1790,///2/1791,///2/1792" }, { "index": 396, "num_nts": 5, "nts_short": "CCCCC", "nts_long": "///z/121,///z/122,///z/123,///z/124,///z/125" }, { "index": 397, "num_nts": 6, "nts_short": "CGUAAA", "nts_long": "///2/17,///2/16,///2/15,///2/668,///2/1143,///2/1144" }, { "index": 398, "num_nts": 6, "nts_short": "CAGUGU", "nts_long": "///2/37,///2/38,///2/515,///2/514,///2/513,///2/487" }, { "index": 399, "num_nts": 6, "nts_short": "GGGAAY", "nts_long": "///2/421,///2/420,///2/419,///2/418,///2/2,///D/223" }, { "index": 400, "num_nts": 6, "nts_short": "AAAGAG", "nts_long": "///2/525,///2/590,///2/587,///2/563,///2/564,///2/565" }, { "index": 401, "num_nts": 6, "nts_short": "UCACAA", "nts_long": "///2/571,///2/570,///2/569,///2/568,///2/583,///2/584" }, { "index": 402, "num_nts": 6, "nts_short": "UAGAAG", "nts_long": "///2/686,///2/685,///2/684,///2/920,///2/922,///2/923" }, { "index": 403, "num_nts": 6, "nts_short": "GCCGGG", "nts_long": "///2/932,///2/931,///2/930,///2/929,///2/928,///2/1014" }, { "index": 404, "num_nts": 6, "nts_short": "UUCGGC", "nts_long": "///2/1045,///2/1046,///2/1047,///2/1048,///2/1068,///2/1067" }, { "index": 405, "num_nts": 6, "nts_short": "GAAAGU", "nts_long": "///2/1051,///2/1050,///2/1049,///2/1070,///2/1071,///2/1072" }, { "index": 406, "num_nts": 6, "nts_short": "AGAACC", "nts_long": "///2/1058,///2/1059,///2/1060,///2/1062,///2/1063,///2/1064" }, { "index": 407, "num_nts": 6, "nts_short": "UAAAAC", "nts_long": "///2/1174,///2/1173,///2/1188,///2/1189,///2/1190,///2/1191" }, { "index": 408, "num_nts": 6, "nts_short": "CGGAGG", "nts_long": "///2/1717,///2/1718,///2/1814,///2/1813,///2/1722,///2/1723" }, { "index": 409, "num_nts": 6, "nts_short": "UGGCUG", "nts_long": "///2/1733,///2/1734,///2/1799,///2/1798,///2/1797,///2/1796" }, { "index": 410, "num_nts": 6, "nts_short": "CGGAAA", "nts_long": "///2/1738,///2/1737,///2/1736,///2/1735,///2/1800,///2/1801" }, { "index": 411, "num_nts": 7, "nts_short": "CAAAAAC", "nts_long": "///2/151,///2/150,///2/149,///2/170,///2/171,///2/173,///2/174" }, { "index": 412, "num_nts": 7, "nts_short": "GAGGCCU", "nts_long": "///2/907,///2/908,///2/909,///2/910,///2/911,///2/912,///2/914" }, { "index": 413, "num_nts": 7, "nts_short": "GGGCAAC", "nts_long": "///2/1207,///2/1837,///2/1836,///2/1833,///2/1832,///2/1831,///2/1705" }, { "index": 414, "num_nts": 7, "nts_short": "CCAAAUU", "nts_long": "///2/1262,///2/1261,///2/1619,///2/1260,///2/1620,///2/1624,///2/1625" }, { "index": 415, "num_nts": 7, "nts_short": "GAAGUCC", "nts_long": "///2/1275,///2/1506,///2/1508,///2/1510,///2/1511,///2/1512,///2/1513" }, { "index": 416, "num_nts": 7, "nts_short": "AUCUUGG", "nts_long": "///2/1344,///2/1343,///2/1341,///2/1340,///2/1339,///2/1338,///2/1490" }, { "index": 417, "num_nts": 7, "nts_short": "GGGGUAC", "nts_long": "///2/1604,///2/1605,///2/1606,///2/1632,///2/1631,///2/1630,///2/1629" }, { "index": 418, "num_nts": 8, "nts_short": "UCAGAAAG", "nts_long": "///2/119,///2/118,///2/445,///2/446,///2/92,///2/447,///2/449,///2/452" }, { "index": 419, "num_nts": 8, "nts_short": "UAACCGAC", "nts_long": "///2/144,///2/313,///2/141,///2/178,///2/179,///2/180,///2/181,///2/182" }, { "index": 420, "num_nts": 8, "nts_short": "CAAUUAAA", "nts_long": "///2/357,///2/102,///2/408,///2/101,///2/100,///2/99,///2/46,///2/473" }, { "index": 421, "num_nts": 8, "nts_short": "GAGAGGUD", "nts_long": "///2/1089,///2/671,///2/665,///2/664,///2/1164,///2/1165,///2/658,///Y/24" }, { "index": 422, "num_nts": 8, "nts_short": "CUAAACAG", "nts_long": "///2/1609,///2/1608,///2/1607,///2/1633,///2/1634,///2/1635,///2/1601,///2/1636" }, { "index": 423, "num_nts": 9, "nts_short": "ACCAAAGUA", "nts_long": "///2/849,///2/850,///2/851,///2/810,///2/809,///2/808,///2/807,///2/857,///2/858" }, { "index": 424, "num_nts": 11, "nts_short": "CGCCAGAGAAR", "nts_long": "///2/879,///2/878,///2/877,///2/876,///2/875,///2/874,///2/872,///2/915,///2/870,///2/916,///O/73" }, { "index": 425, "num_nts": 12, "nts_short": "AGUGCGAAACCC", "nts_long": "///2/1579,///2/1550,///2/1549,///2/1548,///2/1547,///2/1546,///2/1545,///2/1588,///2/1589,///2/1590,///2/1591,///2/1592" } ], "nonStack": { "num_nts": 151, "nts_short": "UCCUUUUAUUCCGUGGCCUUUUCCCUUCCCGCUAUCCGACCCCAUGGUGUAUAUCCCGAGUUGAUUUGUUCUUGUUUCCCCUUCUUACAGCUCUUCUUUCCUUCUUUAAUGCACGCACAUUACACUGGCACAAUCUUCAUUAUUUAUUUCA", "nts_long": "///2/1,///2/3,///2/4,///2/5,///2/8,///2/9,///2/36,///2/45,///2/55,///2/59,///2/67,///2/73,///2/75,///2/76,///2/114,///2/126,///2/127,///2/142,///2/143,///2/160,///2/161,///2/172,///2/199,///2/223,///2/295,///2/345,///2/368,///2/369,///2/382,///2/400,///2/407,///2/450,///2/461,///2/464,///2/488,///2/502,///2/503,///2/507,///2/531,///2/532,///2/539,///2/543,///2/548,///2/555,///2/562,///2/588,///2/589,///2/607,///2/620,///2/627,///2/628,///2/630,///2/672,///2/675,///2/736,///2/750,///2/753,///2/788,///2/795,///2/798,///2/815,///2/871,///2/873,///2/886,///2/887,///2/888,///2/889,///2/891,///2/892,///2/893,///2/905,///2/906,///2/968,///2/970,///2/1016,///2/1061,///2/1073,///2/1116,///2/1124,///2/1125,///2/1153,///2/1155,///2/1202,///2/1216,///2/1244,///2/1248,///2/1253,///2/1254,///2/1259,///2/1274,///2/1283,///2/1300,///2/1311,///2/1314,///2/1360,///2/1363,///2/1371,///2/1390,///2/1397,///2/1403,///2/1423,///2/1462,///2/1463,///2/1464,///2/1477,///2/1509,///2/1519,///2/1522,///2/1533,///2/1535,///2/1552,///2/1553,///2/1556,///2/1557,///2/1573,///2/1574,///2/1580,///2/1582,///2/1675,///2/1676,///2/1677,///2/1695,///2/1698,///2/1699,///2/1701,///2/1721,///2/1757,///2/1771,///2/1772,///2/1781,///2/1783,///2/1824,///2/1825,///2/1838,///2/1841,///2/1867,///2/1868,///z/120,///z/154,///z/227,///z/228,///z/257,///z/264,///z/265,///z/269,///z/274,///z/281,///z/306,///z/324,///z/325,///z/330" }, "num_atom2bases": 82, "atom2bases": [ { "index": 1, "type": "phosphate", "atom": "///2/61/OP2", "nt": "///2/59", "vert_dist": 2.797 }, { "index": 2, "type": "sugar", "atom": "///2/181/O4'", "nt": "///2/126", "vert_dist": 3.390 }, { "index": 3, "type": "sugar", "atom": "///2/129/O4'", "nt": "///2/130", "vert_dist": 3.236 }, { "index": 4, "type": "sugar", "atom": "///2/151/O4'", "nt": "///2/150", "vert_dist": 3.110 }, { "index": 5, "type": "sugar", "atom": "///2/62/O4'", "nt": "///2/172", "vert_dist": 3.205 }, { "index": 6, "type": "sugar", "atom": "///2/182/O4'", "nt": "///2/183", "vert_dist": 2.682 }, { "index": 7, "type": "phosphate", "atom": "///2/200/OP1", "nt": "///2/198", "vert_dist": 2.925 }, { "index": 8, "type": "sugar", "atom": "///2/128/O4'", "nt": "///2/215", "vert_dist": 2.864 }, { "index": 9, "type": "phosphate", "atom": "///2/292/OP2", "nt": "///2/290", "vert_dist": 3.243 }, { "index": 10, "type": "sugar", "atom": "///2/295/O4'", "nt": "///2/293", "vert_dist": 2.948 }, { "index": 11, "type": "phosphate", "atom": "///2/382/OP2", "nt": "///2/380", "vert_dist": 2.936 }, { "index": 12, "type": "sugar", "atom": "///2/118/O4'", "nt": "///2/445", "vert_dist": 3.117 }, { "index": 13, "type": "sugar", "atom": "///2/465/O4'", "nt": "///2/466", "vert_dist": 3.067 }, { "index": 14, "type": "phosphate", "atom": "///2/484/OP2", "nt": "///2/482", "vert_dist": 3.041 }, { "index": 15, "type": "sugar", "atom": "///2/41/O4'", "nt": "///2/485", "vert_dist": 3.012 }, { "index": 16, "type": "sugar", "atom": "///2/509/O4'", "nt": "///2/508", "vert_dist": 3.255 }, { "index": 17, "type": "phosphate", "atom": "///2/542/OP2", "nt": "///2/540", "vert_dist": 2.998 }, { "index": 18, "type": "sugar", "atom": "///2/544/O4'", "nt": "///2/543", "vert_dist": 3.399 }, { "index": 19, "type": "sugar", "atom": "///2/550/O4'", "nt": "///2/549", "vert_dist": 3.395 }, { "index": 20, "type": "sugar", "atom": "///2/553/O2'", "nt": "///2/554", "vert_dist": 2.812 }, { "index": 21, "type": "phosphate", "atom": "///2/575/OP2", "nt": "///2/573", "vert_dist": 3.485 }, { "index": 22, "type": "sugar", "atom": "///2/491/O4'", "nt": "///2/574", "vert_dist": 3.129 }, { "index": 23, "type": "other", "atom": "///f/100/NZ", "nt": "///2/594", "vert_dist": 2.985 }, { "index": 24, "type": "sugar", "atom": "///2/599/O4'", "nt": "///2/605", "vert_dist": 3.020 }, { "index": 25, "type": "phosphate", "atom": "///2/20/O5'", "nt": "///2/620", "vert_dist": 3.045 }, { "index": 26, "type": "phosphate", "atom": "///2/620/OP1", "nt": "///2/620", "vert_dist": 2.999 }, { "index": 27, "type": "sugar", "atom": "///2/662/O4'", "nt": "///2/656", "vert_dist": 3.118 }, { "index": 28, "type": "sugar", "atom": "///2/658/O4'", "nt": "///2/659", "vert_dist": 2.884 }, { "index": 29, "type": "sugar", "atom": "///2/15/O4'", "nt": "///2/668", "vert_dist": 3.131 }, { "index": 30, "type": "sugar", "atom": "///2/797/O2'", "nt": "///2/798", "vert_dist": 2.856 }, { "index": 31, "type": "sugar", "atom": "///2/914/O4'", "nt": "///2/912", "vert_dist": 3.361 }, { "index": 32, "type": "sugar", "atom": "///2/922/O4'", "nt": "///2/920", "vert_dist": 3.422 }, { "index": 33, "type": "sugar", "atom": "///2/969/O4'", "nt": "///2/971", "vert_dist": 3.103 }, { "index": 34, "type": "sugar", "atom": "///2/989/O4'", "nt": "///2/990", "vert_dist": 3.025 }, { "index": 35, "type": "phosphate", "atom": "///2/997/OP2", "nt": "///2/995", "vert_dist": 2.962 }, { "index": 36, "type": "phosphate", "atom": "///2/1059/OP2", "nt": "///2/1057", "vert_dist": 2.857 }, { "index": 37, "type": "sugar", "atom": "///2/1084/O4'", "nt": "///2/1082", "vert_dist": 3.015 }, { "index": 38, "type": "sugar", "atom": "///2/673/O4'", "nt": "///2/1084", "vert_dist": 2.991 }, { "index": 39, "type": "sugar", "atom": "///2/1087/O4'", "nt": "///2/1085", "vert_dist": 2.909 }, { "index": 40, "type": "sugar", "atom": "///2/666/O4'", "nt": "///2/1088", "vert_dist": 3.379 }, { "index": 41, "type": "phosphate", "atom": "///2/1144/OP2", "nt": "///2/1142", "vert_dist": 3.122 }, { "index": 42, "type": "sugar", "atom": "///2/1148/O4'", "nt": "///2/1149", "vert_dist": 3.431 }, { "index": 43, "type": "sugar", "atom": "///2/1147/O4'", "nt": "///2/1150", "vert_dist": 3.305 }, { "index": 44, "type": "phosphate", "atom": "///2/662/OP2", "nt": "///2/1156", "vert_dist": 3.117 }, { "index": 45, "type": "sugar", "atom": "///2/1154/O4'", "nt": "///2/1156", "vert_dist": 3.084 }, { "index": 46, "type": "phosphate", "atom": "///2/1181/OP2", "nt": "///2/1179", "vert_dist": 2.870 }, { "index": 47, "type": "sugar", "atom": "///2/1224/O4'", "nt": "///2/1223", "vert_dist": 3.359 }, { "index": 48, "type": "phosphate", "atom": "///2/1241/OP2", "nt": "///2/1239", "vert_dist": 3.401 }, { "index": 49, "type": "sugar", "atom": "///2/1339/O2'", "nt": "///2/1250", "vert_dist": 2.961 }, { "index": 50, "type": "sugar", "atom": "///2/1247/O4'", "nt": "///2/1251", "vert_dist": 3.424 }, { "index": 51, "type": "sugar", "atom": "///2/1264/O4'", "nt": "///2/1265", "vert_dist": 2.833 }, { "index": 52, "type": "sugar", "atom": "///2/1313/O4'", "nt": "///2/1314", "vert_dist": 2.795 }, { "index": 53, "type": "sugar", "atom": "///2/1494/O4'", "nt": "///2/1326", "vert_dist": 3.274 }, { "index": 54, "type": "sugar", "atom": "///2/1341/O4'", "nt": "///2/1343", "vert_dist": 2.829 }, { "index": 55, "type": "phosphate", "atom": "///2/1357/OP2", "nt": "///2/1358", "vert_dist": 3.246 }, { "index": 56, "type": "phosphate", "atom": "///2/1370/OP2", "nt": "///2/1368", "vert_dist": 2.971 }, { "index": 57, "type": "sugar", "atom": "///2/1372/O4'", "nt": "///2/1370", "vert_dist": 3.025 }, { "index": 58, "type": "sugar", "atom": "///2/1389/O4'", "nt": "///2/1388", "vert_dist": 3.061 }, { "index": 59, "type": "sugar", "atom": "///2/1452/O4'", "nt": "///2/1453", "vert_dist": 2.913 }, { "index": 60, "type": "phosphate", "atom": "///2/1475/OP2", "nt": "///2/1473", "vert_dist": 2.897 }, { "index": 61, "type": "sugar", "atom": "///2/1395/O4'", "nt": "///2/1474", "vert_dist": 2.847 }, { "index": 62, "type": "sugar", "atom": "///2/1331/O4'", "nt": "///2/1489", "vert_dist": 2.923 }, { "index": 63, "type": "sugar", "atom": "///2/1604/O4'", "nt": "///2/1533", "vert_dist": 3.429 }, { "index": 64, "type": "phosphate", "atom": "///2/1551/O3'", "nt": "///2/1552", "vert_dist": 3.221 }, { "index": 65, "type": "phosphate", "atom": "///2/1568/OP2", "nt": "///2/1566", "vert_dist": 2.952 }, { "index": 66, "type": "sugar", "atom": "///2/1405/O4'", "nt": "///2/1580", "vert_dist": 3.220 }, { "index": 67, "type": "sugar", "atom": "///2/1591/O4'", "nt": "///2/1590", "vert_dist": 3.373 }, { "index": 68, "type": "sugar", "atom": "///2/1599/O4'", "nt": "///2/1600", "vert_dist": 2.854 }, { "index": 69, "type": "sugar", "atom": "///2/1597/O2'", "nt": "///2/1603", "vert_dist": 2.995 }, { "index": 70, "type": "phosphate", "atom": "///2/1619/OP2", "nt": "///2/1617", "vert_dist": 3.074 }, { "index": 71, "type": "sugar", "atom": "///2/1674/O2'", "nt": "///2/1675", "vert_dist": 3.025 }, { "index": 72, "type": "sugar", "atom": "///2/1676/O2'", "nt": "///2/1677", "vert_dist": 2.797 }, { "index": 73, "type": "sugar", "atom": "///2/1816/O4'", "nt": "///2/1815", "vert_dist": 3.255 }, { "index": 74, "type": "sugar", "atom": "///2/1206/O2'", "nt": "///2/1834", "vert_dist": 3.011 }, { "index": 75, "type": "sugar", "atom": "///z/122/O4'", "nt": "///z/121", "vert_dist": 3.481 }, { "index": 76, "type": "sugar", "atom": "///z/124/O4'", "nt": "///z/123", "vert_dist": 3.400 }, { "index": 77, "type": "sugar", "atom": "///z/227/O2'", "nt": "///z/228", "vert_dist": 3.366 }, { "index": 78, "type": "sugar", "atom": "///z/234/O4'", "nt": "///z/235", "vert_dist": 2.983 }, { "index": 79, "type": "sugar", "atom": "///z/243/O2'", "nt": "///z/244", "vert_dist": 3.310 }, { "index": 80, "type": "sugar", "atom": "///z/273/O2'", "nt": "///z/274", "vert_dist": 3.200 }, { "index": 81, "type": "sugar", "atom": "///z/282/O4'", "nt": "///z/283", "vert_dist": 2.989 }, { "index": 82, "type": "sugar", "atom": "///z/291/O4'", "nt": "///z/314", "vert_dist": 3.271 } ], "num_hairpins": 38, "hairpins": [ { "index": 1, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 1 ], "summary": "[1] 9 [2.7 2.17] 4", "num_nts": 11, "nts_short": "GUUGAUCCUGC", "nts_long": "///2/7,///2/8,///2/9,///2/10,///2/11,///2/12,///2/13,///2/14,///2/15,///2/16,///2/17", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "UUGAUCCUG", "nts_long": "///2/8,///2/9,///2/10,///2/11,///2/12,///2/13,///2/14,///2/15,///2/16" } ] }, { "index": 2, "type": "hairpin loop", "bridging_nts": [ 10 ], "stem_indices": [ 10 ], "summary": "[1] 10 [2.69 2.80] 2", "num_nts": 12, "nts_short": "CGGCCGGUACAG", "nts_long": "///2/69,///2/70,///2/71,///2/72,///2/73,///2/74,///2/75,///2/76,///2/77,///2/78,///2/79,///2/80", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 10, "nts_short": "GGCCGGUACA", "nts_long": "///2/70,///2/71,///2/72,///2/73,///2/74,///2/75,///2/76,///2/77,///2/78,///2/79" } ] }, { "index": 3, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 18 ], "summary": "[1] 5 [2.156 2.162] 2", "num_nts": 7, "nts_short": "GUAAUUC", "nts_long": "///2/156,///2/157,///2/158,///2/159,///2/160,///2/161,///2/162", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UAAUU", "nts_long": "///2/157,///2/158,///2/159,///2/160,///2/161" } ] }, { "index": 4, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 20 ], "summary": "[1] 6 [2.196 2.203] 5", "num_nts": 8, "nts_short": "CUUCGCGG", "nts_long": "///2/196,///2/197,///2/198,///2/199,///2/200,///2/201,///2/202,///2/203", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UUCGCG", "nts_long": "///2/197,///2/198,///2/199,///2/200,///2/201,///2/202" } ] }, { "index": 5, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ -9 ], "summary": "[1] 6 [2.288 2.295] 1", "num_nts": 8, "nts_short": "GGUGACUC", "nts_long": "///2/288,///2/289,///2/290,///2/291,///2/292,///2/293,///2/294,///2/295", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GUGACU", "nts_long": "///2/289,///2/290,///2/291,///2/292,///2/293,///2/294" } ] }, { "index": 6, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 26 ], "summary": "[1] 9 [2.377 2.387] 7", "num_nts": 11, "nts_short": "GUCGCCGUGCC", "nts_long": "///2/377,///2/378,///2/379,///2/380,///2/381,///2/382,///2/383,///2/384,///2/385,///2/386,///2/387", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "UCGCCGUGC", "nts_long": "///2/378,///2/379,///2/380,///2/381,///2/382,///2/383,///2/384,///2/385,///2/386" } ] }, { "index": 7, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 28 ], "summary": "[1] 4 [2.416 2.421] 4", "num_nts": 6, "nts_short": "UCAGGG", "nts_long": "///2/416,///2/417,///2/418,///2/419,///2/420,///2/421", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CAGG", "nts_long": "///2/417,///2/418,///2/419,///2/420" } ] }, { "index": 8, "type": "hairpin loop", "bridging_nts": [ 10 ], "stem_indices": [ 30 ], "summary": "[1] 10 [2.441 2.452] 3", "num_nts": 12, "nts_short": "CCUGAGAAACGG", "nts_long": "///2/441,///2/442,///2/443,///2/444,///2/445,///2/446,///2/447,///2/448,///2/449,///2/450,///2/451,///2/452", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 10, "nts_short": "CUGAGAAACG", "nts_long": "///2/442,///2/443,///2/444,///2/445,///2/446,///2/447,///2/448,///2/449,///2/450,///2/451" } ] }, { "index": 9, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 31 ], "summary": "[1] 4 [2.462 2.467] 2", "num_nts": 6, "nts_short": "CCAAGG", "nts_long": "///2/462,///2/463,///2/464,///2/465,///2/466,///2/467", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CAAG", "nts_long": "///2/463,///2/464,///2/465,///2/466" } ] }, { "index": 10, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 33 ], "summary": "[1] 5 [2.498 2.504] 3", "num_nts": 7, "nts_short": "CGACCCG", "nts_long": "///2/498,///2/499,///2/500,///2/501,///2/502,///2/503,///2/504", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GACCC", "nts_long": "///2/499,///2/500,///2/501,///2/502,///2/503" } ] }, { "index": 11, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 36 ], "summary": "[1] 4 [2.539 2.544] 3", "num_nts": 6, "nts_short": "CUUUCG", "nts_long": "///2/539,///2/540,///2/541,///2/542,///2/543,///2/544", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UUUC", "nts_long": "///2/540,///2/541,///2/542,///2/543" } ] }, { "index": 12, "type": "hairpin loop", "bridging_nts": [ 11 ], "stem_indices": [ -15 ], "summary": "[1] 11 [2.569 2.581] 1", "num_nts": 13, "nts_short": "ACUUUAAAUCCUU", "nts_long": "///2/569,///2/570,///2/571,///2/572,///2/573,///2/574,///2/575,///2/576,///2/577,///2/578,///2/579,///2/580,///2/581", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 11, "nts_short": "CUUUAAAUCCU", "nts_long": "///2/570,///2/571,///2/572,///2/573,///2/574,///2/575,///2/576,///2/577,///2/578,///2/579,///2/580" } ] }, { "index": 13, "type": "hairpin loop", "bridging_nts": [ 19 ], "stem_indices": [ 39 ], "summary": "[1] 19 [2.601 2.621] 2", "num_nts": 21, "nts_short": "GGCAAGUCUGGUGCCAGCAGC", "nts_long": "///2/601,///2/602,///2/603,///2/604,///2/605,///2/606,///2/607,///2/608,///2/609,///2/610,///2/611,///2/612,///2/613,///2/614,///2/615,///2/616,///2/617,///2/618,///2/619,///2/620,///2/621", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 19, "nts_short": "GCAAGUCUGGUGCCAGCAG", "nts_long": "///2/602,///2/603,///2/604,///2/605,///2/606,///2/607,///2/608,///2/609,///2/610,///2/611,///2/612,///2/613,///2/614,///2/615,///2/616,///2/617,///2/618,///2/619,///2/620" } ] }, { "index": 14, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 41 ], "summary": "[1] 4 [2.618 2.623] 2", "num_nts": 6, "nts_short": "CAGCCG", "nts_long": "///2/618,///2/619,///2/620,///2/621,///2/622,///2/623", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AGCC", "nts_long": "///2/619,///2/620,///2/621,///2/622" } ] }, { "index": 15, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 52 ], "summary": "[1] 7 [2.820 2.828] 2", "num_nts": 9, "nts_short": "UGUUCAAAG", "nts_long": "///2/820,///2/821,///2/822,///2/823,///2/824,///2/825,///2/826,///2/827,///2/828", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "GUUCAAA", "nts_long": "///2/821,///2/822,///2/823,///2/824,///2/825,///2/826,///2/827" } ] }, { "index": 16, "type": "hairpin loop", "bridging_nts": [ 17 ], "stem_indices": [ 54 ], "summary": "[1] 17 [2.884 2.902] 6", "num_nts": 19, "nts_short": "CUAUUUUGUUGGUUUUCGG", "nts_long": "///2/884,///2/885,///2/886,///2/887,///2/888,///2/889,///2/890,///2/891,///2/892,///2/893,///2/894,///2/895,///2/896,///2/897,///2/898,///2/899,///2/900,///2/901,///2/902", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 17, "nts_short": "UAUUUUGUUGGUUUUCG", "nts_long": "///2/885,///2/886,///2/887,///2/888,///2/889,///2/890,///2/891,///2/892,///2/893,///2/894,///2/895,///2/896,///2/897,///2/898,///2/899,///2/900,///2/901" } ] }, { "index": 17, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 60 ], "summary": "[1] 8 [2.957 2.966] 2", "num_nts": 10, "nts_short": "AGGUGAAAUU", "nts_long": "///2/957,///2/958,///2/959,///2/960,///2/961,///2/962,///2/963,///2/964,///2/965,///2/966", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GGUGAAAU", "nts_long": "///2/958,///2/959,///2/960,///2/961,///2/962,///2/963,///2/964,///2/965" } ] }, { "index": 18, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 61 ], "summary": "[1] 4 [2.994 2.999] 2", "num_nts": 6, "nts_short": "CGAAAG", "nts_long": "///2/994,///2/995,///2/996,///2/997,///2/998,///2/999", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///2/995,///2/996,///2/997,///2/998" } ] }, { "index": 19, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 63 ], "summary": "[1] 9 [2.1054 2.1064] 4", "num_nts": 11, "nts_short": "GAUCAGAUACC", "nts_long": "///2/1054,///2/1055,///2/1056,///2/1057,///2/1058,///2/1059,///2/1060,///2/1061,///2/1062,///2/1063,///2/1064", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "AUCAGAUAC", "nts_long": "///2/1055,///2/1056,///2/1057,///2/1058,///2/1059,///2/1060,///2/1061,///2/1062,///2/1063" } ] }, { "index": 20, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ -33 ], "summary": "[1] 6 [2.1113 2.1120] 1", "num_nts": 8, "nts_short": "AUUCCCAU", "nts_long": "///2/1113,///2/1114,///2/1115,///2/1116,///2/1117,///2/1118,///2/1119,///2/1120", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UUCCCA", "nts_long": "///2/1114,///2/1115,///2/1116,///2/1117,///2/1118,///2/1119" } ] }, { "index": 21, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 70 ], "summary": "[1] 4 [2.1141 2.1146] 2", "num_nts": 6, "nts_short": "GGAAAC", "nts_long": "///2/1141,///2/1142,///2/1143,///2/1144,///2/1145,///2/1146", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///2/1142,///2/1143,///2/1144,///2/1145" } ] }, { "index": 22, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 72 ], "summary": "[1] 4 [2.1178 2.1183] 4", "num_nts": 6, "nts_short": "UGCAAA", "nts_long": "///2/1178,///2/1179,///2/1180,///2/1181,///2/1182,///2/1183", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCAA", "nts_long": "///2/1179,///2/1180,///2/1181,///2/1182" } ] }, { "index": 23, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ -35 ], "summary": "[1] 8 [2.1245 2.1254] 1", "num_nts": 10, "nts_short": "GACUCAACAC", "nts_long": "///2/1245,///2/1246,///2/1247,///2/1248,///2/1249,///2/1250,///2/1251,///2/1252,///2/1253,///2/1254", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "ACUCAACA", "nts_long": "///2/1246,///2/1247,///2/1248,///2/1249,///2/1250,///2/1251,///2/1252,///2/1253" } ] }, { "index": 24, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 82 ], "summary": "[1] 8 [2.1295 2.1304] 2", "num_nts": 10, "nts_short": "AUUGAUAGCU", "nts_long": "///2/1295,///2/1296,///2/1297,///2/1298,///2/1299,///2/1300,///2/1301,///2/1302,///2/1303,///2/1304", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UUGAUAGC", "nts_long": "///2/1296,///2/1297,///2/1298,///2/1299,///2/1300,///2/1301,///2/1302,///2/1303" } ] }, { "index": 25, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 87 ], "summary": "[1] 6 [2.1366 2.1373] 2", "num_nts": 8, "nts_short": "GUUAAUUC", "nts_long": "///2/1366,///2/1367,///2/1368,///2/1369,///2/1370,///2/1371,///2/1372,///2/1373", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UUAAUU", "nts_long": "///2/1367,///2/1368,///2/1369,///2/1370,///2/1371,///2/1372" } ] }, { "index": 26, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 92 ], "summary": "[1] 5 [2.1460 2.1466] 5", "num_nts": 7, "nts_short": "CGUUCAG", "nts_long": "///2/1460,///2/1461,///2/1462,///2/1463,///2/1464,///2/1465,///2/1466", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GUUCA", "nts_long": "///2/1461,///2/1462,///2/1463,///2/1464,///2/1465" } ] }, { "index": 27, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 96 ], "summary": "[1] 4 [2.1565 2.1570] 2", "num_nts": 6, "nts_short": "CGGCAG", "nts_long": "///2/1565,///2/1566,///2/1567,///2/1568,///2/1569,///2/1570", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGCA", "nts_long": "///2/1566,///2/1567,///2/1568,///2/1569" } ] }, { "index": 28, "type": "hairpin loop", "bridging_nts": [ 10 ], "stem_indices": [ 97 ], "summary": "[1] 10 [2.1614 2.1625] 5", "num_nts": 12, "nts_short": "AUUGCAAUUAUU", "nts_long": "///2/1614,///2/1615,///2/1616,///2/1617,///2/1618,///2/1619,///2/1620,///2/1621,///2/1622,///2/1623,///2/1624,///2/1625", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 10, "nts_short": "UUGCAAUUAU", "nts_long": "///2/1615,///2/1616,///2/1617,///2/1618,///2/1619,///2/1620,///2/1621,///2/1622,///2/1623,///2/1624" } ] }, { "index": 29, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 99 ], "summary": "[1] 7 [2.1658 2.1666] 2", "num_nts": 9, "nts_short": "GUCAUAAGC", "nts_long": "///2/1658,///2/1659,///2/1660,///2/1661,///2/1662,///2/1663,///2/1664,///2/1665,///2/1666", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UCAUAAG", "nts_long": "///2/1659,///2/1660,///2/1661,///2/1662,///2/1663,///2/1664,///2/1665" } ] }, { "index": 30, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 110 ], "summary": "[1] 6 [2.1846 2.1853] 8", "num_nts": 8, "nts_short": "GGUGAACC", "nts_long": "///2/1846,///2/1847,///2/1848,///2/1849,///2/1850,///2/1851,///2/1852,///2/1853", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GUGAAC", "nts_long": "///2/1847,///2/1848,///2/1849,///2/1850,///2/1851,///2/1852" } ] }, { "index": 31, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 117 ], "summary": "[1] 4 [z.161 z.166] 6", "num_nts": 6, "nts_short": "GAGUAC", "nts_long": "///z/161,///z/162,///z/163,///z/164,///z/165,///z/166", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AGUA", "nts_long": "///z/162,///z/163,///z/164,///z/165" } ] }, { "index": 32, "type": "hairpin loop", "bridging_nts": [ 2 ], "stem_indices": [ 119 ], "summary": "[1] 2 [z.232 z.235] 4", "num_nts": 4, "nts_short": "CGUG", "nts_long": "///z/232,///z/233,///z/234,///z/235", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GU", "nts_long": "///z/233,///z/234" } ] }, { "index": 33, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 121 ], "summary": "[1] 8 [z.262 z.271] 2", "num_nts": 10, "nts_short": "UGUUGGGUCG", "nts_long": "///z/262,///z/263,///z/264,///z/265,///z/266,///z/267,///z/268,///z/269,///z/270,///z/271", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GUUGGGUC", "nts_long": "///z/263,///z/264,///z/265,///z/266,///z/267,///z/268,///z/269,///z/270" } ] }, { "index": 34, "type": "hairpin loop", "bridging_nts": [ 2 ], "stem_indices": [ -56 ], "summary": "[1] 2 [z.280 z.283] 1", "num_nts": 4, "nts_short": "CUUG", "nts_long": "///z/280,///z/281,///z/282,///z/283", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UU", "nts_long": "///z/281,///z/282" } ] }, { "index": 35, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ -57 ], "summary": "[1] 8 [z.288 z.297] 1", "num_nts": 10, "nts_short": "ACUGCCUGAU", "nts_long": "///z/288,///z/289,///z/290,///z/291,///z/292,///z/293,///z/294,///z/295,///z/296,///z/297", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "CUGCCUGA", "nts_long": "///z/289,///z/290,///z/291,///z/292,///z/293,///z/294,///z/295,///z/296" } ] }, { "index": 36, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 122 ], "summary": "[1] 4 [z.294 z.299] 3", "num_nts": 6, "nts_short": "UGAUAG", "nts_long": "///z/294,///z/295,///z/296,///z/297,///z/298,///z/299", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAUA", "nts_long": "///z/295,///z/296,///z/297,///z/298" } ] }, { "index": 37, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 123 ], "summary": "[1] 8 [z.304 z.313] 2", "num_nts": 10, "nts_short": "CUUGCGAGUG", "nts_long": "///z/304,///z/305,///z/306,///z/307,///z/308,///z/309,///z/310,///z/311,///z/312,///z/313", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UUGCGAGU", "nts_long": "///z/305,///z/306,///z/307,///z/308,///z/309,///z/310,///z/311,///z/312" } ] }, { "index": 38, "type": "hairpin loop", "bridging_nts": [ 13 ], "stem_indices": [ 124 ], "summary": "[1] 13 [z.311 z.325] 4", "num_nts": 15, "nts_short": "GUGCCCCGGGAGGUC", "nts_long": "///z/311,///z/312,///z/313,///z/314,///z/315,///z/316,///z/317,///z/318,///z/319,///z/320,///z/321,///z/322,///z/323,///z/324,///z/325", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 13, "nts_short": "UGCCCCGGGAGGU", "nts_long": "///z/312,///z/313,///z/314,///z/315,///z/316,///z/317,///z/318,///z/319,///z/320,///z/321,///z/322,///z/323,///z/324" } ] } ], "num_bulges": 22, "bulges": [ { "index": 1, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -1, 2 ], "summary": "[2] 0 1 [2.11 2.1201 2.12 2.1199] 1 4", "num_nts": 5, "nts_short": "AUAAU", "nts_long": "///2/11,///2/12,///2/1199,///2/1200,///2/1201", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/1200" } ] }, { "index": 2, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 6, 7 ], "summary": "[2] 1 0 [2.49 2.477 2.51 2.476] 3 3", "num_nts": 5, "nts_short": "CAUAG", "nts_long": "///2/49,///2/50,///2/51,///2/476,///2/477", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///2/50" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 3, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ -10, 22 ], "summary": "[2] 1 0 [2.312 2.337 2.314 2.336] 1 2", "num_nts": 5, "nts_short": "GAUAC", "nts_long": "///2/312,///2/313,///2/314,///2/336,///2/337", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///2/313" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 4, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ -12, 32 ], "summary": "[2] 1 0 [2.487 2.512 2.489 2.511] 1 3", "num_nts": 5, "nts_short": "UUAUA", "nts_long": "///2/487,///2/488,///2/489,///2/511,///2/512", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/488" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 5, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -13, 33 ], "summary": "[2] 0 1 [2.495 2.508 2.496 2.506] 1 3", "num_nts": 5, "nts_short": "UCGGA", "nts_long": "///2/495,///2/496,///2/506,///2/507,///2/508", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/507" } ] }, { "index": 6, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ -22, 49 ], "summary": "[2] 1 0 [2.752 2.791 2.754 2.790] 1 3", "num_nts": 5, "nts_short": "GCGCC", "nts_long": "///2/752,///2/753,///2/754,///2/790,///2/791", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///2/753" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 7, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -23, -24 ], "summary": "[2] 0 1 [2.804 2.860 2.805 2.858] 1 1", "num_nts": 5, "nts_short": "UUAGG", "nts_long": "///2/804,///2/805,///2/858,///2/859,///2/860", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/859" } ] }, { "index": 8, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 67, 68 ], "summary": "[2] 1 0 [2.1108 2.1124 2.1110 2.1123] 6 2", "num_nts": 5, "nts_short": "GCGCC", "nts_long": "///2/1108,///2/1109,///2/1110,///2/1123,///2/1124", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///2/1109" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 9, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 77, 78 ], "summary": "[2] 0 1 [2.1235 2.1523 2.1236 2.1521] 3 2", "num_nts": 5, "nts_short": "GGCAC", "nts_long": "///2/1235,///2/1236,///2/1521,///2/1522,///2/1523", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/1522" } ] }, { "index": 10, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 83, 84 ], "summary": "[2] 1 0 [2.1325 2.1503 2.1327 2.1502] 2 3", "num_nts": 5, "nts_short": "GUGCC", "nts_long": "///2/1325,///2/1326,///2/1327,///2/1502,///2/1503", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1326" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 11, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 85, -38 ], "summary": "[2] 0 1 [2.1337 2.1490 2.1338 2.1488] 3 1", "num_nts": 5, "nts_short": "CGCAG", "nts_long": "///2/1337,///2/1338,///2/1488,///2/1489,///2/1490", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/1489" } ] }, { "index": 12, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ -38, -39 ], "summary": "[2] 1 0 [2.1338 2.1488 2.1340 2.1487] 1 1", "num_nts": 5, "nts_short": "GUUAC", "nts_long": "///2/1338,///2/1339,///2/1340,///2/1487,///2/1488", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1339" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 13, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ -41, 87 ], "summary": "[2] 1 0 [2.1363 2.1375 2.1365 2.1374] 1 2", "num_nts": 5, "nts_short": "CUGCG", "nts_long": "///2/1363,///2/1364,///2/1365,///2/1374,///2/1375", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1364" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 14, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 90, 91 ], "summary": "[2] 0 1 [2.1412 2.1429 2.1413 2.1427] 4 4", "num_nts": 5, "nts_short": "CGCGG", "nts_long": "///2/1412,///2/1413,///2/1427,///2/1428,///2/1429", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1428" } ] }, { "index": 15, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 103, -51 ], "summary": "[2] 1 0 [2.1727 2.1807 2.1729 2.1806] 5 1", "num_nts": 5, "nts_short": "GUUAC", "nts_long": "///2/1727,///2/1728,///2/1729,///2/1806,///2/1807", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1728" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 16, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 108, -53 ], "summary": "[2] 0 1 [2.1750 2.1784 2.1751 2.1782] 2 1", "num_nts": 5, "nts_short": "CCGCG", "nts_long": "///2/1750,///2/1751,///2/1782,///2/1783,///2/1784", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///2/1783" } ] }, { "index": 17, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -54, 109 ], "summary": "[2] 0 1 [2.1753 2.1780 2.1754 2.1778] 1 3", "num_nts": 5, "nts_short": "CGCGG", "nts_long": "///2/1753,///2/1754,///2/1778,///2/1779,///2/1780", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1779" } ] }, { "index": 18, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 115, 116 ], "summary": "[2] 0 1 [z.149 z.244 z.150 z.242] 4 4", "num_nts": 5, "nts_short": "UGCAA", "nts_long": "///z/149,///z/150,///z/242,///z/243,///z/244", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///z/243" } ] }, { "index": 19, "type": "bulge", "bridging_nts": [ 2, 0 ], "stem_indices": [ -7, 13 ], "summary": "[2] 2 0 [2.112 2.349 2.115 2.348] 1 2", "num_nts": 6, "nts_short": "UGGUAA", "nts_long": "///2/112,///2/113,///2/114,///2/115,///2/348,///2/349", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/113,///2/114" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 20, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ -28, 55 ], "summary": "[2] 0 2 [2.922 2.1022 2.923 2.1019] 1 2", "num_nts": 6, "nts_short": "AGCAUU", "nts_long": "///2/922,///2/923,///2/1019,///2/1020,///2/1021,///2/1022", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/1020,///2/1021" } ] }, { "index": 21, "type": "bulge", "bridging_nts": [ 3, 0 ], "stem_indices": [ 32, -13 ], "summary": "[2] 3 0 [2.491 2.509 2.495 2.508] 3 1", "num_nts": 7, "nts_short": "CCACUAG", "nts_long": "///2/491,///2/492,///2/493,///2/494,///2/495,///2/508,///2/509", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CAC", "nts_long": "///2/492,///2/493,///2/494" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 22, "type": "bulge", "bridging_nts": [ 4, 0 ], "stem_indices": [ 25, 26 ], "summary": "[2] 4 0 [2.366 2.394 2.371 2.393] 3 7", "num_nts": 8, "nts_short": "UUUCGAUG", "nts_long": "///2/366,///2/367,///2/368,///2/369,///2/370,///2/371,///2/393,///2/394", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UUCG", "nts_long": "///2/367,///2/368,///2/369,///2/370" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] } ], "num_iloops": 80, "iloops": [ { "index": 1, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -2, 5 ], "summary": "[2] 1 1 [2.34 2.521 2.36 2.519] 1 2", "num_nts": 6, "nts_short": "UCUAAA", "nts_long": "///2/34,///2/35,///2/36,///2/519,///2/520,///2/521", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///2/35" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/520" } ] }, { "index": 2, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 12, -6 ], "summary": "[2] 1 1 [2.108 2.353 2.110 2.351] 3 1", "num_nts": 6, "nts_short": "GUUGUC", "nts_long": "///2/108,///2/109,///2/110,///2/351,///2/352,///2/353", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/109" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/352" } ] }, { "index": 3, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -6, -7 ], "summary": "[2] 1 1 [2.110 2.351 2.112 2.349] 1 1", "num_nts": 6, "nts_short": "UAUACG", "nts_long": "///2/110,///2/111,///2/112,///2/349,///2/350,///2/351", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///2/111" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///2/350" } ] }, { "index": 4, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 29, 30 ], "summary": "[2] 1 1 [2.437 2.456 2.439 2.454] 2 3", "num_nts": 6, "nts_short": "GGAUAC", "nts_long": "///2/437,///2/438,///2/439,///2/454,///2/455,///2/456", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/438" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/455" } ] }, { "index": 5, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -11, 31 ], "summary": "[2] 1 1 [2.459 2.470 2.461 2.468] 1 2", "num_nts": 6, "nts_short": "CAUAAG", "nts_long": "///2/459,///2/460,///2/461,///2/468,///2/469,///2/470", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///2/460" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/469" } ] }, { "index": 6, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -17, -18 ], "summary": "[2] 1 1 [2.663 2.1164 2.665 2.1162] 1 1", "num_nts": 6, "nts_short": "CAGCCG", "nts_long": "///2/663,///2/664,///2/665,///2/1162,///2/1163,///2/1164", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///2/664" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///2/1163" } ] }, { "index": 7, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -20, 43 ], "summary": "[2] 1 1 [2.673 2.1032 2.675 2.1030] 1 2", "num_nts": 6, "nts_short": "GCUAAC", "nts_long": "///2/673,///2/674,///2/675,///2/1030,///2/1031,///2/1032", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///2/674" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/1031" } ] }, { "index": 8, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 48, -22 ], "summary": "[2] 1 1 [2.750 2.793 2.752 2.791] 2 1", "num_nts": 6, "nts_short": "CGGCCG", "nts_long": "///2/750,///2/751,///2/752,///2/791,///2/792,///2/793", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/751" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///2/792" } ] }, { "index": 9, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -24, -25 ], "summary": "[2] 1 1 [2.805 2.858 2.807 2.856] 1 1", "num_nts": 6, "nts_short": "UUGCUA", "nts_long": "///2/805,///2/806,///2/807,///2/856,///2/857,///2/858", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/806" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/857" } ] }, { "index": 10, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -26, -27 ], "summary": "[2] 1 1 [2.874 2.912 2.876 2.910] 1 1", "num_nts": 6, "nts_short": "GACGCC", "nts_long": "///2/874,///2/875,///2/876,///2/910,///2/911,///2/912", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///2/875" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///2/911" } ] }, { "index": 11, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -32, 67 ], "summary": "[2] 1 1 [2.1101 2.1131 2.1103 2.1129] 1 6", "num_nts": 6, "nts_short": "UGCGGG", "nts_long": "///2/1101,///2/1102,///2/1103,///2/1129,///2/1130,///2/1131", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1102" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1130" } ] }, { "index": 12, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 68, -33 ], "summary": "[2] 1 1 [2.1111 2.1122 2.1113 2.1120] 2 1", "num_nts": 6, "nts_short": "UUAUGA", "nts_long": "///2/1111,///2/1112,///2/1113,///2/1120,///2/1121,///2/1122", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1112" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1121" } ] }, { "index": 13, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -40, 86 ], "summary": "[2] 1 1 [2.1347 2.1382 2.1349 2.1380] 1 2", "num_nts": 6, "nts_short": "UGGCGA", "nts_long": "///2/1347,///2/1348,///2/1349,///2/1380,///2/1381,///2/1382", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1348" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1381" } ] }, { "index": 14, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 93, 94 ], "summary": "[2] 1 1 [2.1537 2.1596 2.1539 2.1594] 2 3", "num_nts": 6, "nts_short": "ACUAUU", "nts_long": "///2/1537,///2/1538,///2/1539,///2/1594,///2/1595,///2/1596", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///2/1538" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1595" } ] }, { "index": 15, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 98, 99 ], "summary": "[2] 1 1 [2.1655 2.1669 2.1657 2.1667] 5 2", "num_nts": 6, "nts_short": "CGGUUG", "nts_long": "///2/1655,///2/1656,///2/1657,///2/1667,///2/1668,///2/1669", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1656" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1668" } ] }, { "index": 16, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 100, -49 ], "summary": "[2] 1 1 [2.1706 2.1828 2.1708 2.1826] 2 1", "num_nts": 6, "nts_short": "GUCGUC", "nts_long": "///2/1706,///2/1707,///2/1708,///2/1826,///2/1827,///2/1828", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1707" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1827" } ] }, { "index": 17, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -52, 105 ], "summary": "[2] 1 1 [2.1736 2.1798 2.1738 2.1796] 1 2", "num_nts": 6, "nts_short": "GGCGUC", "nts_long": "///2/1736,///2/1737,///2/1738,///2/1796,///2/1797,///2/1798", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1737" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1797" } ] }, { "index": 18, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 105, 106 ], "summary": "[2] 1 1 [2.1739 2.1795 2.1741 2.1793] 2 2", "num_nts": 6, "nts_short": "CCUACG", "nts_long": "///2/1739,///2/1740,///2/1741,///2/1793,///2/1794,///2/1795", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///2/1740" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///2/1794" } ] }, { "index": 19, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 107, 108 ], "summary": "[2] 1 1 [2.1747 2.1787 2.1749 2.1785] 2 2", "num_nts": 6, "nts_short": "CGGCUG", "nts_long": "///2/1747,///2/1748,///2/1749,///2/1785,///2/1786,///2/1787", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1748" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1786" } ] }, { "index": 20, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -53, -54 ], "summary": "[2] 1 1 [2.1751 2.1782 2.1753 2.1780] 1 1", "num_nts": 6, "nts_short": "CCCGAG", "nts_long": "///2/1751,///2/1752,///2/1753,///2/1780,///2/1781,///2/1782", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///2/1752" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/1781" } ] }, { "index": 21, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 112, 113 ], "summary": "[2] 1 1 [z.135 z.289 z.137 z.287] 2 4", "num_nts": 6, "nts_short": "GAGUAC", "nts_long": "///z/135,///z/136,///z/137,///z/287,///z/288,///z/289", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///z/136" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///z/288" } ] }, { "index": 22, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 114, 115 ], "summary": "[2] 1 1 [z.144 z.249 z.146 z.247] 4 4", "num_nts": 6, "nts_short": "UGGCUG", "nts_long": "///z/144,///z/145,///z/146,///z/247,///z/248,///z/249", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///z/145" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///z/248" } ] }, { "index": 23, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ 35, 36 ], "summary": "[2] 1 2 [2.535 2.549 2.537 2.546] 4 3", "num_nts": 7, "nts_short": "GACGGCC", "nts_long": "///2/535,///2/536,///2/537,///2/546,///2/547,///2/548,///2/549", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///2/536" }, { "index": 2, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/547,///2/548" } ] }, { "index": 24, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ 50, -23 ], "summary": "[2] 1 2 [2.802 2.863 2.804 2.860] 3 1", "num_nts": 7, "nts_short": "ACUGAAU", "nts_long": "///2/802,///2/803,///2/804,///2/860,///2/861,///2/862,///2/863", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///2/803" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/861,///2/862" } ] }, { "index": 25, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ 55, 56 ], "summary": "[2] 1 2 [2.924 2.1018 2.926 2.1015] 2 2", "num_nts": 7, "nts_short": "GGAUUUU", "nts_long": "///2/924,///2/925,///2/926,///2/1015,///2/1016,///2/1017,///2/1018", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/925" }, { "index": 2, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1016,///2/1017" } ] }, { "index": 26, "type": "asymmetric internal loop", "bridging_nts": [ 2, 1 ], "stem_indices": [ -50, 103 ], "summary": "[2] 2 1 [2.1720 2.1813 2.1723 2.1811] 1 5", "num_nts": 7, "nts_short": "UUGGCUA", "nts_long": "///2/1720,///2/1721,///2/1722,///2/1723,///2/1811,///2/1812,///2/1813", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1721,///2/1722" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1812" } ] }, { "index": 27, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ -51, 104 ], "summary": "[2] 1 2 [2.1729 2.1806 2.1731 2.1803] 1 3", "num_nts": 7, "nts_short": "UUAUUGA", "nts_long": "///2/1729,///2/1730,///2/1731,///2/1803,///2/1804,///2/1805,///2/1806", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1730" }, { "index": 2, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1804,///2/1805" } ] }, { "index": 28, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 3, 4 ], "summary": "[2] 2 2 [2.22 2.652 2.25 2.649] 2 6", "num_nts": 8, "nts_short": "AGCAUAUU", "nts_long": "///2/22,///2/23,///2/24,///2/25,///2/649,///2/650,///2/651,///2/652", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/23,///2/24" }, { "index": 2, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/650,///2/651" } ] }, { "index": 29, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 17, 18 ], "summary": "[2] 2 2 [2.152 2.166 2.155 2.163] 2 2", "num_nts": 8, "nts_short": "UGUGUAGA", "nts_long": "///2/152,///2/153,///2/154,///2/155,///2/163,///2/164,///2/165,///2/166", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/153,///2/154" }, { "index": 2, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/164,///2/165" } ] }, { "index": 30, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 37, -15 ], "summary": "[2] 2 2 [2.566 2.584 2.569 2.581] 2 1", "num_nts": 8, "nts_short": "UCCAUUAA", "nts_long": "///2/566,///2/567,///2/568,///2/569,///2/581,///2/582,///2/583,///2/584", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/567,///2/568" }, { "index": 2, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/582,///2/583" } ] }, { "index": 31, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 45, 46 ], "summary": "[2] 2 2 [2.692 2.734 2.695 2.731] 3 2", "num_nts": 8, "nts_short": "GAGCGUCC", "nts_long": "///2/692,///2/693,///2/694,///2/695,///2/731,///2/732,///2/733,///2/734", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/693,///2/694" }, { "index": 2, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/732,///2/733" } ] }, { "index": 32, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ -27, 54 ], "summary": "[2] 2 2 [2.876 2.910 2.879 2.907] 1 6", "num_nts": 8, "nts_short": "CCGCGAGG", "nts_long": "///2/876,///2/877,///2/878,///2/879,///2/907,///2/908,///2/909,///2/910", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/877,///2/878" }, { "index": 2, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/908,///2/909" } ] }, { "index": 33, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 58, 59 ], "summary": "[2] 2 2 [2.942 2.984 2.945 2.981] 2 8", "num_nts": 8, "nts_short": "GUAUAGAC", "nts_long": "///2/942,///2/943,///2/944,///2/945,///2/981,///2/982,///2/983,///2/984", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/943,///2/944" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/982,///2/983" } ] }, { "index": 34, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 66, -32 ], "summary": "[2] 2 2 [2.1098 2.1134 2.1101 2.1131] 2 1", "num_nts": 8, "nts_short": "CGAUGCAG", "nts_long": "///2/1098,///2/1099,///2/1100,///2/1101,///2/1131,///2/1132,///2/1133,///2/1134", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1099,///2/1100" }, { "index": 2, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1132,///2/1133" } ] }, { "index": 35, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 76, 77 ], "summary": "[2] 2 2 [2.1230 2.1528 2.1233 2.1525] 3 3", "num_nts": 8, "nts_short": "CCUGCGCG", "nts_long": "///2/1230,///2/1231,///2/1232,///2/1233,///2/1525,///2/1526,///2/1527,///2/1528", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/1231,///2/1232" }, { "index": 2, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/1526,///2/1527" } ] }, { "index": 36, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 81, 82 ], "summary": "[2] 2 2 [2.1291 2.1308 2.1294 2.1305] 2 2", "num_nts": 8, "nts_short": "ACAGCUUU", "nts_long": "///2/1291,///2/1292,///2/1293,///2/1294,///2/1305,///2/1306,///2/1307,///2/1308", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1292,///2/1293" }, { "index": 2, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1306,///2/1307" } ] }, { "index": 37, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ -43, -44 ], "summary": "[2] 2 2 [2.1399 2.1447 2.1402 2.1444] 1 1", "num_nts": 8, "nts_short": "CUAAUUAG", "nts_long": "///2/1399,///2/1400,///2/1401,///2/1402,///2/1444,///2/1445,///2/1446,///2/1447", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1400,///2/1401" }, { "index": 2, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1445,///2/1446" } ] }, { "index": 38, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ -44, 89 ], "summary": "[2] 2 2 [2.1402 2.1444 2.1405 2.1441] 1 4", "num_nts": 8, "nts_short": "ACUAUUCU", "nts_long": "///2/1402,///2/1403,///2/1404,///2/1405,///2/1441,///2/1442,///2/1443,///2/1444", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/1403,///2/1404" }, { "index": 2, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1442,///2/1443" } ] }, { "index": 39, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 101, 102 ], "summary": "[2] 2 2 [2.1713 2.1820 2.1716 2.1817] 3 2", "num_nts": 8, "nts_short": "CUACGAAG", "nts_long": "///2/1713,///2/1714,///2/1715,///2/1716,///2/1817,///2/1818,///2/1819,///2/1820", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1714,///2/1715" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1818,///2/1819" } ] }, { "index": 40, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 102, -50 ], "summary": "[2] 2 2 [2.1717 2.1816 2.1720 2.1813] 2 1", "num_nts": 8, "nts_short": "CGAUAGAG", "nts_long": "///2/1717,///2/1718,///2/1719,///2/1720,///2/1813,///2/1814,///2/1815,///2/1816", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1718,///2/1719" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1814,///2/1815" } ] }, { "index": 41, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 104, -52 ], "summary": "[2] 2 2 [2.1733 2.1801 2.1736 2.1798] 3 1", "num_nts": 8, "nts_short": "UGAGCGAA", "nts_long": "///2/1733,///2/1734,///2/1735,///2/1736,///2/1798,///2/1799,///2/1800,///2/1801", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1734,///2/1735" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1799,///2/1800" } ] }, { "index": 42, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 5, -3 ], "summary": "[2] 2 3 [2.37 2.518 2.40 2.514] 2 1", "num_nts": 9, "nts_short": "CAAAUGACG", "nts_long": "///2/37,///2/38,///2/39,///2/40,///2/514,///2/515,///2/516,///2/517,///2/518", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/38,///2/39" }, { "index": 2, "num_nts": 3, "nts_short": "GAC", "nts_long": "///2/515,///2/516,///2/517" } ] }, { "index": 43, "type": "asymmetric internal loop", "bridging_nts": [ 4, 1 ], "stem_indices": [ 8, 9 ], "summary": "[2] 4 1 [2.57 2.88 2.62 2.86] 2 2", "num_nts": 9, "nts_short": "UCUAAGCUG", "nts_long": "///2/57,///2/58,///2/59,///2/60,///2/61,///2/62,///2/86,///2/87,///2/88", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CUAA", "nts_long": "///2/58,///2/59,///2/60,///2/61" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/87" } ] }, { "index": 44, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ 22, 23 ], "summary": "[2] 3 2 [2.315 2.335 2.319 2.332] 2 3", "num_nts": 9, "nts_short": "CGCACGGCG", "nts_long": "///2/315,///2/316,///2/317,///2/318,///2/319,///2/332,///2/333,///2/334,///2/335", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GCA", "nts_long": "///2/316,///2/317,///2/318" }, { "index": 2, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/333,///2/334" } ] }, { "index": 45, "type": "asymmetric internal loop", "bridging_nts": [ 1, 4 ], "stem_indices": [ 27, 28 ], "summary": "[2] 1 4 [2.411 2.429 2.413 2.424] 3 4", "num_nts": 9, "nts_short": "GGGCGAUUC", "nts_long": "///2/411,///2/412,///2/413,///2/424,///2/425,///2/426,///2/427,///2/428,///2/429", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/412" }, { "index": 2, "num_nts": 4, "nts_short": "GAUU", "nts_long": "///2/425,///2/426,///2/427,///2/428" } ] }, { "index": 46, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 34, 35 ], "summary": "[2] 2 3 [2.529 2.556 2.532 2.552] 2 4", "num_nts": 9, "nts_short": "AUACGUAAU", "nts_long": "///2/529,///2/530,///2/531,///2/532,///2/552,///2/553,///2/554,///2/555,///2/556", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/530,///2/531" }, { "index": 2, "num_nts": 3, "nts_short": "UAA", "nts_long": "///2/553,///2/554,///2/555" } ] }, { "index": 47, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ -29, 57 ], "summary": "[2] 3 2 [2.931 2.1010 2.935 2.1007] 1 4", "num_nts": 9, "nts_short": "CGGGGCAAG", "nts_long": "///2/931,///2/932,///2/933,///2/934,///2/935,///2/1007,///2/1008,///2/1009,///2/1010", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GGG", "nts_long": "///2/932,///2/933,///2/934" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1008,///2/1009" } ] }, { "index": 48, "type": "asymmetric internal loop", "bridging_nts": [ 4, 1 ], "stem_indices": [ 62, -30 ], "summary": "[2] 4 1 [2.1042 2.1073 2.1047 2.1071] 6 1", "num_nts": 9, "nts_short": "AGGUUCGUU", "nts_long": "///2/1042,///2/1043,///2/1044,///2/1045,///2/1046,///2/1047,///2/1071,///2/1072,///2/1073", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGUU", "nts_long": "///2/1043,///2/1044,///2/1045,///2/1046" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1072" } ] }, { "index": 49, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 73, 74 ], "summary": "[2] 2 3 [2.1214 2.1685 2.1217 2.1681] 7 2", "num_nts": 9, "nts_short": "ACCAUCCCU", "nts_long": "///2/1214,///2/1215,///2/1216,///2/1217,///2/1681,///2/1682,///2/1683,///2/1684,///2/1685", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/1215,///2/1216" }, { "index": 2, "num_nts": 3, "nts_short": "CCC", "nts_long": "///2/1682,///2/1683,///2/1684" } ] }, { "index": 50, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ -42, -43 ], "summary": "[2] 3 2 [2.1395 2.1450 2.1399 2.1447] 1 1", "num_nts": 9, "nts_short": "CAUGCGAGG", "nts_long": "///2/1395,///2/1396,///2/1397,///2/1398,///2/1399,///2/1447,///2/1448,///2/1449,///2/1450", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AUG", "nts_long": "///2/1396,///2/1397,///2/1398" }, { "index": 2, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/1448,///2/1449" } ] }, { "index": 51, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ -48, 100 ], "summary": "[2] 2 3 [2.1702 2.1833 2.1705 2.1829] 1 2", "num_nts": 9, "nts_short": "GCCCGUAAC", "nts_long": "///2/1702,///2/1703,///2/1704,///2/1705,///2/1829,///2/1830,///2/1831,///2/1832,///2/1833", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/1703,///2/1704" }, { "index": 2, "num_nts": 3, "nts_short": "UAA", "nts_long": "///2/1830,///2/1831,///2/1832" } ] }, { "index": 52, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ -49, 101 ], "summary": "[2] 2 3 [2.1708 2.1826 2.1711 2.1822] 1 3", "num_nts": 9, "nts_short": "CGCUAAAAG", "nts_long": "///2/1708,///2/1709,///2/1710,///2/1711,///2/1822,///2/1823,///2/1824,///2/1825,///2/1826", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/1709,///2/1710" }, { "index": 2, "num_nts": 3, "nts_short": "AAA", "nts_long": "///2/1823,///2/1824,///2/1825" } ] }, { "index": 53, "type": "asymmetric internal loop", "bridging_nts": [ 5, 1 ], "stem_indices": [ -4, 6 ], "summary": "[2] 5 1 [2.41 2.481 2.47 2.479] 1 3", "num_nts": 10, "nts_short": "GAUUAAGCGC", "nts_long": "///2/41,///2/42,///2/43,///2/44,///2/45,///2/46,///2/47,///2/479,///2/480,///2/481", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "AUUAA", "nts_long": "///2/42,///2/43,///2/44,///2/45,///2/46" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/480" } ] }, { "index": 54, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 19, 20 ], "summary": "[2] 3 3 [2.188 2.211 2.192 2.207] 4 5", "num_nts": 10, "nts_short": "CUGACGGAUG", "nts_long": "///2/188,///2/189,///2/190,///2/191,///2/192,///2/207,///2/208,///2/209,///2/210,///2/211", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UGA", "nts_long": "///2/189,///2/190,///2/191" }, { "index": 2, "num_nts": 3, "nts_short": "GAU", "nts_long": "///2/208,///2/209,///2/210" } ] }, { "index": 55, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 43, 44 ], "summary": "[2] 3 3 [2.676 2.1029 2.680 2.1025] 2 3", "num_nts": 10, "nts_short": "CGUAGUCAAG", "nts_long": "///2/676,///2/677,///2/678,///2/679,///2/680,///2/1025,///2/1026,///2/1027,///2/1028,///2/1029", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GUA", "nts_long": "///2/677,///2/678,///2/679" }, { "index": 2, "num_nts": 3, "nts_short": "CAA", "nts_long": "///2/1026,///2/1027,///2/1028" } ] }, { "index": 56, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 56, -29 ], "summary": "[2] 3 3 [2.927 2.1014 2.931 2.1010] 2 1", "num_nts": 10, "nts_short": "CGGCCGAAUG", "nts_long": "///2/927,///2/928,///2/929,///2/930,///2/931,///2/1010,///2/1011,///2/1012,///2/1013,///2/1014", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GGC", "nts_long": "///2/928,///2/929,///2/930" }, { "index": 2, "num_nts": 3, "nts_short": "AAU", "nts_long": "///2/1011,///2/1012,///2/1013" } ] }, { "index": 57, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ -30, 63 ], "summary": "[2] 3 3 [2.1047 2.1071 2.1051 2.1067] 1 4", "num_nts": 10, "nts_short": "CGAAGCGUAG", "nts_long": "///2/1047,///2/1048,///2/1049,///2/1050,///2/1051,///2/1067,///2/1068,///2/1069,///2/1070,///2/1071", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///2/1048,///2/1049,///2/1050" }, { "index": 2, "num_nts": 3, "nts_short": "GUA", "nts_long": "///2/1068,///2/1069,///2/1070" } ] }, { "index": 58, "type": "asymmetric internal loop", "bridging_nts": [ 1, 5 ], "stem_indices": [ 64, 65 ], "summary": "[2] 1 5 [2.1091 2.1158 2.1093 2.1152] 3 2", "num_nts": 10, "nts_short": "CGAUCUUUGG", "nts_long": "///2/1091,///2/1092,///2/1093,///2/1152,///2/1153,///2/1154,///2/1155,///2/1156,///2/1157,///2/1158", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1092" }, { "index": 2, "num_nts": 5, "nts_short": "CUUUG", "nts_long": "///2/1153,///2/1154,///2/1155,///2/1156,///2/1157" } ] }, { "index": 59, "type": "asymmetric internal loop", "bridging_nts": [ 5, 1 ], "stem_indices": [ 80, -37 ], "summary": "[2] 5 1 [2.1281 2.1316 2.1287 2.1314] 5 1", "num_nts": 10, "nts_short": "GACAGGAUUC", "nts_long": "///2/1281,///2/1282,///2/1283,///2/1284,///2/1285,///2/1286,///2/1287,///2/1314,///2/1315,///2/1316", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "ACAGG", "nts_long": "///2/1282,///2/1283,///2/1284,///2/1285,///2/1286" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///2/1315" } ] }, { "index": 60, "type": "asymmetric internal loop", "bridging_nts": [ 2, 4 ], "stem_indices": [ -37, 81 ], "summary": "[2] 2 4 [2.1287 2.1314 2.1290 2.1309] 1 2", "num_nts": 10, "nts_short": "AUUGCUCGAU", "nts_long": "///2/1287,///2/1288,///2/1289,///2/1290,///2/1309,///2/1310,///2/1311,///2/1312,///2/1313,///2/1314", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1288,///2/1289" }, { "index": 2, "num_nts": 4, "nts_short": "UCGA", "nts_long": "///2/1310,///2/1311,///2/1312,///2/1313" } ] }, { "index": 61, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 95, 96 ], "summary": "[2] 3 3 [2.1560 2.1575 2.1564 2.1571] 3 2", "num_nts": 10, "nts_short": "UACGCGCGCG", "nts_long": "///2/1560,///2/1561,///2/1562,///2/1563,///2/1564,///2/1571,///2/1572,///2/1573,///2/1574,///2/1575", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "ACG", "nts_long": "///2/1561,///2/1562,///2/1563" }, { "index": 2, "num_nts": 3, "nts_short": "CGC", "nts_long": "///2/1572,///2/1573,///2/1574" } ] }, { "index": 62, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 106, 107 ], "summary": "[2] 3 3 [2.1742 2.1792 2.1746 2.1788] 2 2", "num_nts": 10, "nts_short": "CGGAUAGAAG", "nts_long": "///2/1742,///2/1743,///2/1744,///2/1745,///2/1746,///2/1788,///2/1789,///2/1790,///2/1791,///2/1792", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/1743,///2/1744,///2/1745" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///2/1789,///2/1790,///2/1791" } ] }, { "index": 63, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 109, -55 ], "summary": "[2] 3 3 [2.1756 2.1776 2.1760 2.1772] 3 1", "num_nts": 10, "nts_short": "CGGGGCCCUG", "nts_long": "///2/1756,///2/1757,///2/1758,///2/1759,///2/1760,///2/1772,///2/1773,///2/1774,///2/1775,///2/1776", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GGG", "nts_long": "///2/1757,///2/1758,///2/1759" }, { "index": 2, "num_nts": 3, "nts_short": "CCU", "nts_long": "///2/1773,///2/1774,///2/1775" } ] }, { "index": 64, "type": "asymmetric internal loop", "bridging_nts": [ 4, 3 ], "stem_indices": [ 9, 10 ], "summary": "[2] 4 3 [2.63 2.85 2.68 2.81] 2 2", "num_nts": 11, "nts_short": "UACGCAUGAAA", "nts_long": "///2/63,///2/64,///2/65,///2/66,///2/67,///2/68,///2/81,///2/82,///2/83,///2/84,///2/85", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "ACGC", "nts_long": "///2/64,///2/65,///2/66,///2/67" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///2/82,///2/83,///2/84" } ] }, { "index": 65, "type": "asymmetric internal loop", "bridging_nts": [ 4, 3 ], "stem_indices": [ 13, 14 ], "summary": "[2] 4 3 [2.116 2.347 2.121 2.343] 2 3", "num_nts": 11, "nts_short": "UCCUUUAUUCG", "nts_long": "///2/116,///2/117,///2/118,///2/119,///2/120,///2/121,///2/343,///2/344,///2/345,///2/346,///2/347", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CCUU", "nts_long": "///2/117,///2/118,///2/119,///2/120" }, { "index": 2, "num_nts": 3, "nts_short": "UUC", "nts_long": "///2/344,///2/345,///2/346" } ] }, { "index": 66, "type": "asymmetric internal loop", "bridging_nts": [ 1, 6 ], "stem_indices": [ -14, 37 ], "summary": "[2] 1 6 [2.563 2.592 2.565 2.585] 1 2", "num_nts": 11, "nts_short": "GAGCGAGGAUC", "nts_long": "///2/563,///2/564,///2/565,///2/585,///2/586,///2/587,///2/588,///2/589,///2/590,///2/591,///2/592", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///2/564" }, { "index": 2, "num_nts": 6, "nts_short": "GAGGAU", "nts_long": "///2/586,///2/587,///2/588,///2/589,///2/590,///2/591" } ] }, { "index": 67, "type": "asymmetric internal loop", "bridging_nts": [ 4, 3 ], "stem_indices": [ 79, -36 ], "summary": "[2] 4 3 [2.1268 2.1514 2.1273 2.1510] 3 1", "num_nts": 11, "nts_short": "CGGCCCGUCCG", "nts_long": "///2/1268,///2/1269,///2/1270,///2/1271,///2/1272,///2/1273,///2/1510,///2/1511,///2/1512,///2/1513,///2/1514", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGCC", "nts_long": "///2/1269,///2/1270,///2/1271,///2/1272" }, { "index": 2, "num_nts": 3, "nts_short": "UCC", "nts_long": "///2/1511,///2/1512,///2/1513" } ] }, { "index": 68, "type": "asymmetric internal loop", "bridging_nts": [ 2, 6 ], "stem_indices": [ -8, 21 ], "summary": "[2] 2 6 [2.216 2.309 2.219 2.302] 1 5", "num_nts": 12, "nts_short": "CAUUACCUCGGG", "nts_long": "///2/216,///2/217,///2/218,///2/219,///2/302,///2/303,///2/304,///2/305,///2/306,///2/307,///2/308,///2/309", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/217,///2/218" }, { "index": 2, "num_nts": 6, "nts_short": "CCUCGG", "nts_long": "///2/303,///2/304,///2/305,///2/306,///2/307,///2/308" } ] }, { "index": 69, "type": "asymmetric internal loop", "bridging_nts": [ 3, 6 ], "stem_indices": [ 59, 60 ], "summary": "[2] 3 6 [2.952 2.974 2.956 2.967] 8 2 k-turn:normal", "num_nts": 13, "nts_short": "GCUAGCUUGGACC", "nts_long": "///2/952,///2/953,///2/954,///2/955,///2/956,///2/967,///2/968,///2/969,///2/970,///2/971,///2/972,///2/973,///2/974", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CUA", "nts_long": "///2/953,///2/954,///2/955" }, { "index": 2, "num_nts": 6, "nts_short": "UUGGAC", "nts_long": "///2/968,///2/969,///2/970,///2/971,///2/972,///2/973" } ] }, { "index": 70, "type": "asymmetric internal loop", "bridging_nts": [ 5, 4 ], "stem_indices": [ 120, 121 ], "summary": "[2] 5 4 [z.255 z.277 z.261 z.272] 3 2", "num_nts": 13, "nts_short": "CGAGUAGCGAAAG", "nts_long": "///z/255,///z/256,///z/257,///z/258,///z/259,///z/260,///z/261,///z/272,///z/273,///z/274,///z/275,///z/276,///z/277", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAGUA", "nts_long": "///z/256,///z/257,///z/258,///z/259,///z/260" }, { "index": 2, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///z/273,///z/274,///z/275,///z/276" } ] }, { "index": 71, "type": "asymmetric internal loop", "bridging_nts": [ 4, 6 ], "stem_indices": [ 24, 25 ], "summary": "[2] 4 6 [2.359 2.403 2.364 2.396] 3 3", "num_nts": 14, "nts_short": "UAUCAAUGACCACG", "nts_long": "///2/359,///2/360,///2/361,///2/362,///2/363,///2/364,///2/396,///2/397,///2/398,///2/399,///2/400,///2/401,///2/402,///2/403", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AUCA", "nts_long": "///2/360,///2/361,///2/362,///2/363" }, { "index": 2, "num_nts": 6, "nts_short": "GACCAC", "nts_long": "///2/397,///2/398,///2/399,///2/400,///2/401,///2/402" } ] }, { "index": 72, "type": "asymmetric internal loop", "bridging_nts": [ 6, 4 ], "stem_indices": [ 71, 72 ], "summary": "[2] 6 4 [2.1168 2.1191 2.1175 2.1186] 3 4", "num_nts": 14, "nts_short": "GGAGUAUGUGAAAC", "nts_long": "///2/1168,///2/1169,///2/1170,///2/1171,///2/1172,///2/1173,///2/1174,///2/1175,///2/1186,///2/1187,///2/1188,///2/1189,///2/1190,///2/1191", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GAGUAU", "nts_long": "///2/1169,///2/1170,///2/1171,///2/1172,///2/1173,///2/1174" }, { "index": 2, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///2/1187,///2/1188,///2/1189,///2/1190" } ] }, { "index": 73, "type": "symmetric internal loop", "bridging_nts": [ 5, 5 ], "stem_indices": [ -47, 97 ], "summary": "[2] 5 5 [2.1604 2.1635 2.1610 2.1629] 1 5", "num_nts": 14, "nts_short": "GGGAUCGCAUGAAC", "nts_long": "///2/1604,///2/1605,///2/1606,///2/1607,///2/1608,///2/1609,///2/1610,///2/1629,///2/1630,///2/1631,///2/1632,///2/1633,///2/1634,///2/1635", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GGAUC", "nts_long": "///2/1605,///2/1606,///2/1607,///2/1608,///2/1609" }, { "index": 2, "num_nts": 5, "nts_short": "AUGAA", "nts_long": "///2/1630,///2/1631,///2/1632,///2/1633,///2/1634" } ] }, { "index": 74, "type": "asymmetric internal loop", "bridging_nts": [ 5, 6 ], "stem_indices": [ 16, 17 ], "summary": "[2] 5 6 [2.145 2.174 2.151 2.167] 2 2", "num_nts": 15, "nts_short": "GGAUAACGCUAAUAC", "nts_long": "///2/145,///2/146,///2/147,///2/148,///2/149,///2/150,///2/151,///2/167,///2/168,///2/169,///2/170,///2/171,///2/172,///2/173,///2/174", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAUAA", "nts_long": "///2/146,///2/147,///2/148,///2/149,///2/150" }, { "index": 2, "num_nts": 6, "nts_short": "CUAAUA", "nts_long": "///2/168,///2/169,///2/170,///2/171,///2/172,///2/173" } ] }, { "index": 75, "type": "asymmetric internal loop", "bridging_nts": [ 7, 4 ], "stem_indices": [ -46, 95 ], "summary": "[2] 7 4 [2.1550 2.1582 2.1558 2.1577] 1 3", "num_nts": 15, "nts_short": "GUGCCUACCGUAACC", "nts_long": "///2/1550,///2/1551,///2/1552,///2/1553,///2/1554,///2/1555,///2/1556,///2/1557,///2/1558,///2/1577,///2/1578,///2/1579,///2/1580,///2/1581,///2/1582", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UGCCUAC", "nts_long": "///2/1551,///2/1552,///2/1553,///2/1554,///2/1555,///2/1556,///2/1557" }, { "index": 2, "num_nts": 4, "nts_short": "UAAC", "nts_long": "///2/1578,///2/1579,///2/1580,///2/1581" } ] }, { "index": 76, "type": "asymmetric internal loop", "bridging_nts": [ 5, 7 ], "stem_indices": [ 40, 41 ], "summary": "[2] 5 7 [2.611 2.632 2.617 2.624] 4 2", "num_nts": 16, "nts_short": "GUGCCAGCGGUAAUUC", "nts_long": "///2/611,///2/612,///2/613,///2/614,///2/615,///2/616,///2/617,///2/624,///2/625,///2/626,///2/627,///2/628,///2/629,///2/630,///2/631,///2/632", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UGCCA", "nts_long": "///2/612,///2/613,///2/614,///2/615,///2/616" }, { "index": 2, "num_nts": 7, "nts_short": "GGUAAUU", "nts_long": "///2/625,///2/626,///2/627,///2/628,///2/629,///2/630,///2/631" } ] }, { "index": 77, "type": "asymmetric internal loop", "bridging_nts": [ 5, 7 ], "stem_indices": [ 84, 85 ], "summary": "[2] 5 7 [2.1329 2.1500 2.1335 2.1492] 3 3", "num_nts": 16, "nts_short": "UGCAUGGUCUGUGAUG", "nts_long": "///2/1329,///2/1330,///2/1331,///2/1332,///2/1333,///2/1334,///2/1335,///2/1492,///2/1493,///2/1494,///2/1495,///2/1496,///2/1497,///2/1498,///2/1499,///2/1500", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GCAUG", "nts_long": "///2/1330,///2/1331,///2/1332,///2/1333,///2/1334" }, { "index": 2, "num_nts": 7, "nts_short": "CUGUGAU", "nts_long": "///2/1493,///2/1494,///2/1495,///2/1496,///2/1497,///2/1498,///2/1499" } ] }, { "index": 78, "type": "asymmetric internal loop", "bridging_nts": [ 7, 6 ], "stem_indices": [ -25, 51 ], "summary": "[2] 7 6 [2.807 2.856 2.815 2.849] 1 2", "num_nts": 17, "nts_short": "GAAAAAAUUACCGCAGC", "nts_long": "///2/807,///2/808,///2/809,///2/810,///2/811,///2/812,///2/813,///2/814,///2/815,///2/849,///2/850,///2/851,///2/852,///2/853,///2/854,///2/855,///2/856", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "AAAAAAU", "nts_long": "///2/808,///2/809,///2/810,///2/811,///2/812,///2/813,///2/814" }, { "index": 2, "num_nts": 6, "nts_short": "CCGCAG", "nts_long": "///2/850,///2/851,///2/852,///2/853,///2/854,///2/855" } ] }, { "index": 79, "type": "asymmetric internal loop", "bridging_nts": [ 12, 3 ], "stem_indices": [ 86, -41 ], "summary": "[2] 12 3 [2.1350 2.1379 2.1363 2.1375] 2 1", "num_nts": 19, "nts_short": "UGGAGCGAUUUGUCGAUAA", "nts_long": "///2/1350,///2/1351,///2/1352,///2/1353,///2/1354,///2/1355,///2/1356,///2/1357,///2/1358,///2/1359,///2/1360,///2/1361,///2/1362,///2/1363,///2/1375,///2/1376,///2/1377,///2/1378,///2/1379", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 12, "nts_short": "GGAGCGAUUUGU", "nts_long": "///2/1351,///2/1352,///2/1353,///2/1354,///2/1355,///2/1356,///2/1357,///2/1358,///2/1359,///2/1360,///2/1361,///2/1362" }, { "index": 2, "num_nts": 3, "nts_short": "AUA", "nts_long": "///2/1376,///2/1377,///2/1378" } ] }, { "index": 80, "type": "asymmetric internal loop", "bridging_nts": [ 8, 9 ], "stem_indices": [ 94, -46 ], "summary": "[2] 8 9 [2.1541 2.1592 2.1550 2.1582] 3 1", "num_nts": 21, "nts_short": "GCUCAGCGUGCCGUUGAACCC", "nts_long": "///2/1541,///2/1542,///2/1543,///2/1544,///2/1545,///2/1546,///2/1547,///2/1548,///2/1549,///2/1550,///2/1582,///2/1583,///2/1584,///2/1585,///2/1586,///2/1587,///2/1588,///2/1589,///2/1590,///2/1591,///2/1592", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "CUCAGCGU", "nts_long": "///2/1542,///2/1543,///2/1544,///2/1545,///2/1546,///2/1547,///2/1548,///2/1549" }, { "index": 2, "num_nts": 9, "nts_short": "CGUUGAACC", "nts_long": "///2/1583,///2/1584,///2/1585,///2/1586,///2/1587,///2/1588,///2/1589,///2/1590,///2/1591" } ] } ], "num_junctions": 22, "junctions": [ { "index": 1, "type": "3-way junction", "bridging_nts": [ 2, 1, 2 ], "stem_indices": [ 75, 76, -45 ], "summary": "[3] 2 1 2 [2.1225 2.1641 2.1228 2.1530 2.1532 2.1638] 5 3 1", "num_nts": 11, "nts_short": "UGGAUACGGAA", "nts_long": "///2/1225,///2/1226,///2/1227,///2/1228,///2/1530,///2/1531,///2/1532,///2/1638,///2/1639,///2/1640,///2/1641", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1226,///2/1227" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/1531" }, { "index": 3, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1639,///2/1640" } ] }, { "index": 2, "type": "3-way junction", "bridging_nts": [ 0, 5, 1 ], "stem_indices": [ -3, -4, -12 ], "summary": "[3] 0 5 1 [2.40 2.514 2.41 2.481 2.487 2.512] 1 1 1", "num_nts": 12, "nts_short": "AGCGCAAAUAGU", "nts_long": "///2/40,///2/41,///2/481,///2/482,///2/483,///2/484,///2/485,///2/486,///2/487,///2/512,///2/513,///2/514", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 5, "nts_short": "GCAAA", "nts_long": "///2/482,///2/483,///2/484,///2/485,///2/486" }, { "index": 3, "num_nts": 1, "nts_short": "G", "nts_long": "///2/513" } ] }, { "index": 3, "type": "3-way junction", "bridging_nts": [ 2, 4, 0 ], "stem_indices": [ 44, -21, -28 ], "summary": "[3] 2 4 0 [2.682 2.1023 2.685 2.917 2.922 2.1022] 3 1 1", "num_nts": 12, "nts_short": "UGGAUUAAGAUA", "nts_long": "///2/682,///2/683,///2/684,///2/685,///2/917,///2/918,///2/919,///2/920,///2/921,///2/922,///2/1022,///2/1023", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/683,///2/684" }, { "index": 2, "num_nts": 4, "nts_short": "UAAG", "nts_long": "///2/918,///2/919,///2/920,///2/921" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 4, "type": "3-way junction", "bridging_nts": [ 2, 1, 4 ], "stem_indices": [ 51, 52, 53 ], "summary": "[3] 2 1 4 [2.816 2.848 2.819 2.829 2.831 2.843] 2 2 3", "num_nts": 13, "nts_short": "AGAGCAGCUGGAU", "nts_long": "///2/816,///2/817,///2/818,///2/819,///2/829,///2/830,///2/831,///2/843,///2/844,///2/845,///2/846,///2/847,///2/848", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/817,///2/818" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///2/830" }, { "index": 3, "num_nts": 4, "nts_short": "UGGA", "nts_long": "///2/844,///2/845,///2/846,///2/847" } ] }, { "index": 5, "type": "3-way junction", "bridging_nts": [ 2, 4, 3 ], "stem_indices": [ 65, 66, 70 ], "summary": "[3] 2 4 3 [2.1094 2.1151 2.1097 2.1135 2.1140 2.1147] 2 2 2", "num_nts": 15, "nts_short": "CCGGCUUCCGCAAAG", "nts_long": "///2/1094,///2/1095,///2/1096,///2/1097,///2/1135,///2/1136,///2/1137,///2/1138,///2/1139,///2/1140,///2/1147,///2/1148,///2/1149,///2/1150,///2/1151", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/1095,///2/1096" }, { "index": 2, "num_nts": 4, "nts_short": "UUCC", "nts_long": "///2/1136,///2/1137,///2/1138,///2/1139" }, { "index": 3, "num_nts": 3, "nts_short": "AAA", "nts_long": "///2/1148,///2/1149,///2/1150" } ] }, { "index": 6, "type": "3-way junction", "bridging_nts": [ 3, 3, 5 ], "stem_indices": [ -36, 80, 83 ], "summary": "[3] 3 3 5 [2.1273 2.1510 2.1277 2.1320 2.1324 2.1504] 1 5 2", "num_nts": 17, "nts_short": "CGGACGGGUGUUAGAUG", "nts_long": "///2/1273,///2/1274,///2/1275,///2/1276,///2/1277,///2/1320,///2/1321,///2/1322,///2/1323,///2/1324,///2/1504,///2/1505,///2/1506,///2/1507,///2/1508,///2/1509,///2/1510", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/1274,///2/1275,///2/1276" }, { "index": 2, "num_nts": 3, "nts_short": "GGU", "nts_long": "///2/1321,///2/1322,///2/1323" }, { "index": 3, "num_nts": 5, "nts_short": "UAGAU", "nts_long": "///2/1505,///2/1506,///2/1507,///2/1508,///2/1509" } ] }, { "index": 7, "type": "3-way junction", "bridging_nts": [ 3, 6, 2 ], "stem_indices": [ -45, 93, -47 ], "summary": "[3] 3 6 2 [2.1532 2.1638 2.1536 2.1597 2.1604 2.1635] 1 2 1", "num_nts": 17, "nts_short": "CACUGCGUGAUGGCGAG", "nts_long": "///2/1532,///2/1533,///2/1534,///2/1535,///2/1536,///2/1597,///2/1598,///2/1599,///2/1600,///2/1601,///2/1602,///2/1603,///2/1604,///2/1635,///2/1636,///2/1637,///2/1638", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "ACU", "nts_long": "///2/1533,///2/1534,///2/1535" }, { "index": 2, "num_nts": 6, "nts_short": "GUGAUG", "nts_long": "///2/1598,///2/1599,///2/1600,///2/1601,///2/1602,///2/1603" }, { "index": 3, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1636,///2/1637" } ] }, { "index": 8, "type": "3-way junction", "bridging_nts": [ 2, 7, 3 ], "stem_indices": [ 57, 58, 61 ], "summary": "[3] 2 7 3 [2.938 2.1004 2.941 2.985 2.993 2.1000] 4 2 2", "num_nts": 18, "nts_short": "AUUCGGACCAGAGCAUUU", "nts_long": "///2/938,///2/939,///2/940,///2/941,///2/985,///2/986,///2/987,///2/988,///2/989,///2/990,///2/991,///2/992,///2/993,///2/1000,///2/1001,///2/1002,///2/1003,///2/1004", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/939,///2/940" }, { "index": 2, "num_nts": 7, "nts_short": "GACCAGA", "nts_long": "///2/986,///2/987,///2/988,///2/989,///2/990,///2/991,///2/992" }, { "index": 3, "num_nts": 3, "nts_short": "AUU", "nts_long": "///2/1001,///2/1002,///2/1003" } ] }, { "index": 9, "type": "3-way junction", "bridging_nts": [ 2, 5, 6 ], "stem_indices": [ 74, 75, 98 ], "summary": "[3] 2 5 6 [2.1218 2.1680 2.1221 2.1645 2.1651 2.1673] 2 5 5", "num_nts": 19, "nts_short": "CCAGCCAGUAAUGAUUAAG", "nts_long": "///2/1218,///2/1219,///2/1220,///2/1221,///2/1645,///2/1646,///2/1647,///2/1648,///2/1649,///2/1650,///2/1651,///2/1673,///2/1674,///2/1675,///2/1676,///2/1677,///2/1678,///2/1679,///2/1680", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1219,///2/1220" }, { "index": 2, "num_nts": 5, "nts_short": "CAGUA", "nts_long": "///2/1646,///2/1647,///2/1648,///2/1649,///2/1650" }, { "index": 3, "num_nts": 6, "nts_short": "GAUUAA", "nts_long": "///2/1674,///2/1675,///2/1676,///2/1677,///2/1678,///2/1679" } ] }, { "index": 10, "type": "3-way junction", "bridging_nts": [ 3, 5, 8 ], "stem_indices": [ 88, -42, 92 ], "summary": "[3] 3 5 8 [2.1391 2.1479 2.1395 2.1450 2.1456 2.1470] 3 1 5", "num_nts": 22, "nts_short": "CUGGCGGACAAGCCCGAGAUUG", "nts_long": "///2/1391,///2/1392,///2/1393,///2/1394,///2/1395,///2/1450,///2/1451,///2/1452,///2/1453,///2/1454,///2/1455,///2/1456,///2/1470,///2/1471,///2/1472,///2/1473,///2/1474,///2/1475,///2/1476,///2/1477,///2/1478,///2/1479", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UGG", "nts_long": "///2/1392,///2/1393,///2/1394" }, { "index": 2, "num_nts": 5, "nts_short": "GACAA", "nts_long": "///2/1451,///2/1452,///2/1453,///2/1454,///2/1455" }, { "index": 3, "num_nts": 8, "nts_short": "CCGAGAUU", "nts_long": "///2/1471,///2/1472,///2/1473,///2/1474,///2/1475,///2/1476,///2/1477,///2/1478" } ] }, { "index": 11, "type": "3-way junction", "bridging_nts": [ 6, 6, 5 ], "stem_indices": [ -39, -40, 88 ], "summary": "[3] 6 6 5 [2.1340 2.1487 2.1347 2.1382 2.1389 2.1481] 1 1 3", "num_nts": 23, "nts_short": "UCUUAGUUAACGAGACGCAAUAA", "nts_long": "///2/1340,///2/1341,///2/1342,///2/1343,///2/1344,///2/1345,///2/1346,///2/1347,///2/1382,///2/1383,///2/1384,///2/1385,///2/1386,///2/1387,///2/1388,///2/1389,///2/1481,///2/1482,///2/1483,///2/1484,///2/1485,///2/1486,///2/1487", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "CUUAGU", "nts_long": "///2/1341,///2/1342,///2/1343,///2/1344,///2/1345,///2/1346" }, { "index": 2, "num_nts": 6, "nts_short": "ACGAGA", "nts_long": "///2/1383,///2/1384,///2/1385,///2/1386,///2/1387,///2/1388" }, { "index": 3, "num_nts": 5, "nts_short": "CAAUA", "nts_long": "///2/1482,///2/1483,///2/1484,///2/1485,///2/1486" } ] }, { "index": 12, "type": "3-way junction", "bridging_nts": [ 7, 11, 3 ], "stem_indices": [ 78, -35, 79 ], "summary": "[3] 7 11 3 [2.1237 2.1520 2.1245 2.1254 2.1266 2.1516] 2 1 3", "num_nts": 27, "nts_short": "CUUAAUUUGCGGGAAACCUCACGGCUG", "nts_long": "///2/1237,///2/1238,///2/1239,///2/1240,///2/1241,///2/1242,///2/1243,///2/1244,///2/1245,///2/1254,///2/1255,///2/1256,///2/1257,///2/1258,///2/1259,///2/1260,///2/1261,///2/1262,///2/1263,///2/1264,///2/1265,///2/1266,///2/1516,///2/1517,///2/1518,///2/1519,///2/1520", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UUAAUUU", "nts_long": "///2/1238,///2/1239,///2/1240,///2/1241,///2/1242,///2/1243,///2/1244" }, { "index": 2, "num_nts": 11, "nts_short": "GGGAAACCUCA", "nts_long": "///2/1255,///2/1256,///2/1257,///2/1258,///2/1259,///2/1260,///2/1261,///2/1262,///2/1263,///2/1264,///2/1265" }, { "index": 3, "num_nts": 3, "nts_short": "GCU", "nts_long": "///2/1517,///2/1518,///2/1519" } ] }, { "index": 13, "type": "4-way junction", "bridging_nts": [ 0, 0, 0, 0 ], "stem_indices": [ 113, 114, 120, -56 ], "summary": "[4] 0 0 0 0 [z.140 z.284 z.141 z.252 z.253 z.279 z.280 z.283] 4 4 3 1", "num_nts": 8, "nts_short": "AUAGCCGU", "nts_long": "///z/140,///z/141,///z/252,///z/253,///z/279,///z/280,///z/283,///z/284", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 14, "type": "4-way junction", "bridging_nts": [ 0, 1, 1, 0 ], "stem_indices": [ 111, 112, 122, 123 ], "summary": "[4] 0 1 1 0 [z.133 z.315 z.134 z.290 z.292 z.301 z.303 z.314] 9 2 3 2", "num_nts": 10, "nts_short": "GAUGCGUGCC", "nts_long": "///z/133,///z/134,///z/290,///z/291,///z/292,///z/301,///z/302,///z/303,///z/314,///z/315", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///z/291" }, { "index": 3, "num_nts": 1, "nts_short": "U", "nts_long": "///z/302" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 15, "type": "4-way junction", "bridging_nts": [ 2, 0, 1, 0 ], "stem_indices": [ 116, 117, 118, 119 ], "summary": "[4] 2 0 1 0 [z.153 z.239 z.156 z.171 z.172 z.227 z.229 z.238] 4 6 3 4", "num_nts": 11, "nts_short": "GAACGAUUGCC", "nts_long": "///z/153,///z/154,///z/155,///z/156,///z/171,///z/172,///z/227,///z/228,///z/229,///z/238,///z/239", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///z/154,///z/155" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 1, "nts_short": "U", "nts_long": "///z/228" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 16, "type": "4-way junction", "bridging_nts": [ 2, 2, 3, 1 ], "stem_indices": [ -33, 69, 121, 69 ], "summary": "[4] 2 2 3 1 [2.1113 2.1120 2.1116 z.268 z.271 z.262 z.266 2.1118] 1 3 2 3", "is_repeated": true, "num_nts": 16, "nts_short": "AUUCGUCGUGUUGCAU", "nts_long": "///2/1113,///2/1114,///2/1115,///2/1116,///z/268,///z/269,///z/270,///z/271,///z/262,///z/263,///z/264,///z/265,///z/266,///2/1118,///2/1119,///2/1120", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1114,///2/1115" }, { "index": 2, "num_nts": 2, "nts_short": "UC", "nts_long": "///z/269,///z/270" }, { "index": 3, "num_nts": 3, "nts_short": "GUU", "nts_long": "///z/263,///z/264,///z/265" }, { "index": 4, "num_nts": 1, "nts_short": "A", "nts_long": "///2/1119" } ] }, { "index": 17, "type": "4-way junction", "bridging_nts": [ 7, 1, 3, 0 ], "stem_indices": [ 11, 12, 24, 27 ], "summary": "[4] 7 1 3 0 [2.98 2.432 2.106 2.355 2.357 2.405 2.409 2.431] 3 3 3 3", "num_nts": 19, "nts_short": "CAUUAAAUCGCCGUGACGG", "nts_long": "///2/98,///2/99,///2/100,///2/101,///2/102,///2/103,///2/104,///2/105,///2/106,///2/355,///2/356,///2/357,///2/405,///2/406,///2/407,///2/408,///2/409,///2/431,///2/432", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "AUUAAAU", "nts_long": "///2/99,///2/100,///2/101,///2/102,///2/103,///2/104,///2/105" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///2/356" }, { "index": 3, "num_nts": 3, "nts_short": "UGA", "nts_long": "///2/406,///2/407,///2/408" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 18, "type": "5-way junction", "bridging_nts": [ 0, 0, 2, 3, 0 ], "stem_indices": [ -18, 42, 70, 42, -19 ], "summary": "[5] 0 0 2 3 0 [2.665 2.1162 2.666 2.1145 2.1146 2.1141 2.1144 2.667 2.671 2.1161] 1 2 2 2 1", "is_repeated": true, "num_nts": 15, "nts_short": "GUACGGAAUAAAAUC", "nts_long": "///2/665,///2/666,///2/1145,///2/1146,///2/1141,///2/1142,///2/1143,///2/1144,///2/667,///2/668,///2/669,///2/670,///2/671,///2/1161,///2/1162", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1142,///2/1143" }, { "index": 4, "num_nts": 3, "nts_short": "AAA", "nts_long": "///2/668,///2/669,///2/670" }, { "index": 5, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 19, "type": "5-way junction", "bridging_nts": [ 0, 0, 2, 6, 1 ], "stem_indices": [ 38, 39, 41, 39, 40 ], "summary": "[5] 0 0 2 6 1 [2.599 2.637 2.600 2.622 2.623 2.618 2.621 2.601 2.608 2.635] 4 2 2 2 4", "is_repeated": true, "num_nts": 19, "nts_short": "AGCGCAGCGGCAAGUCGCU", "nts_long": "///2/599,///2/600,///2/622,///2/623,///2/618,///2/619,///2/620,///2/621,///2/601,///2/602,///2/603,///2/604,///2/605,///2/606,///2/607,///2/608,///2/635,///2/636,///2/637", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/619,///2/620" }, { "index": 4, "num_nts": 6, "nts_short": "GCAAGU", "nts_long": "///2/602,///2/603,///2/604,///2/605,///2/606,///2/607" }, { "index": 5, "num_nts": 1, "nts_short": "C", "nts_long": "///2/636" } ] }, { "index": 20, "type": "5-way junction", "bridging_nts": [ 5, 1, 1, 2, 3 ], "stem_indices": [ 14, 15, 19, -8, -10 ], "summary": "[5] 5 1 1 2 3 [2.123 2.341 2.129 2.183 2.185 2.214 2.216 2.309 2.312 2.337] 3 2 4 1 1", "num_nts": 22, "nts_short": "GUCGCUCGGGUGCGCCGCGACC", "nts_long": "///2/123,///2/124,///2/125,///2/126,///2/127,///2/128,///2/129,///2/183,///2/184,///2/185,///2/214,///2/215,///2/216,///2/309,///2/310,///2/311,///2/312,///2/337,///2/338,///2/339,///2/340,///2/341", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UCGCU", "nts_long": "///2/124,///2/125,///2/126,///2/127,///2/128" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///2/184" }, { "index": 3, "num_nts": 1, "nts_short": "G", "nts_long": "///2/215" }, { "index": 4, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/310,///2/311" }, { "index": 5, "num_nts": 3, "nts_short": "GAC", "nts_long": "///2/338,///2/339,///2/340" } ] }, { "index": 21, "type": "5-way junction", "bridging_nts": [ 2, 6, 1, 1, 3 ], "stem_indices": [ 7, 8, 11, 29, -11 ], "summary": "[5] 2 6 1 1 3 [2.53 2.474 2.56 2.89 2.96 2.434 2.436 2.457 2.459 2.470] 3 2 3 2 1", "num_nts": 23, "nts_short": "CAUGCGAAUGGCGAGCACGGCAG", "nts_long": "///2/53,///2/54,///2/55,///2/56,///2/89,///2/90,///2/91,///2/92,///2/93,///2/94,///2/95,///2/96,///2/434,///2/435,///2/436,///2/457,///2/458,///2/459,///2/470,///2/471,///2/472,///2/473,///2/474", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/54,///2/55" }, { "index": 2, "num_nts": 6, "nts_short": "GAAUGG", "nts_long": "///2/90,///2/91,///2/92,///2/93,///2/94,///2/95" }, { "index": 3, "num_nts": 1, "nts_short": "A", "nts_long": "///2/435" }, { "index": 4, "num_nts": 1, "nts_short": "A", "nts_long": "///2/458" }, { "index": 5, "num_nts": 3, "nts_short": "GCA", "nts_long": "///2/471,///2/472,///2/473" } ] }, { "index": 22, "type": "5-way junction", "bridging_nts": [ 3, 6, 5, 3, 3 ], "stem_indices": [ 4, -2, 34, -14, 38 ], "summary": "[5] 3 6 5 3 3 [2.30 2.644 2.34 2.521 2.528 2.557 2.563 2.592 2.596 2.640] 6 1 2 1 4", "num_nts": 30, "nts_short": "CUUGUAAAUAACAUGGAAUGCCAUUAAUAG", "nts_long": "///2/30,///2/31,///2/32,///2/33,///2/34,///2/521,///2/522,///2/523,///2/524,///2/525,///2/526,///2/527,///2/528,///2/557,///2/558,///2/559,///2/560,///2/561,///2/562,///2/563,///2/592,///2/593,///2/594,///2/595,///2/596,///2/640,///2/641,///2/642,///2/643,///2/644", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UUG", "nts_long": "///2/31,///2/32,///2/33" }, { "index": 2, "num_nts": 6, "nts_short": "AAUAAC", "nts_long": "///2/522,///2/523,///2/524,///2/525,///2/526,///2/527" }, { "index": 3, "num_nts": 5, "nts_short": "GGAAU", "nts_long": "///2/558,///2/559,///2/560,///2/561,///2/562" }, { "index": 4, "num_nts": 3, "nts_short": "CAU", "nts_long": "///2/593,///2/594,///2/595" }, { "index": 5, "num_nts": 3, "nts_short": "AUA", "nts_long": "///2/641,///2/642,///2/643" } ] } ], "num_ssSegments": 31, "ssSegments": [ { "index": 1, "num_nts": 3, "nts_short": "UAC", "nts_long": "///2/1,///2/2,///2/3" }, { "index": 2, "num_nts": 3, "nts_short": "ACU", "nts_long": "///2/141,///2/142,///2/143" }, { "index": 3, "num_nts": 6, "nts_short": "UGCCGA", "nts_long": "///2/176,///2/177,///2/178,///2/179,///2/180,///2/181" }, { "index": 4, "is_broken": true, "num_nts": 3, "nts_short": "AGU", "nts_long": "///2/224,///2/225,///2/287" }, { "index": 5, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/296,///2/297" }, { "index": 6, "is_broken": true, "num_nts": 3, "nts_short": "CCG", "nts_long": "///2/322,///2/323,///2/329" }, { "index": 7, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/654,///2/655" }, { "index": 8, "num_nts": 6, "nts_short": "UUGCUG", "nts_long": "///2/657,///2/658,///2/659,///2/660,///2/661,///2/662" }, { "index": 9, "num_nts": 1, "nts_short": "A", "nts_long": "///2/672" }, { "index": 10, "num_nts": 4, "nts_short": "UCUU", "nts_long": "///2/686,///2/687,///2/688,///2/689" }, { "index": 11, "is_broken": true, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/697,///2/729" }, { "index": 12, "num_nts": 1, "nts_short": "U", "nts_long": "///2/743" }, { "index": 13, "num_nts": 1, "nts_short": "A", "nts_long": "///2/795" }, { "index": 14, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/798,///2/799" }, { "index": 15, "num_nts": 1, "nts_short": "C", "nts_long": "///2/834" }, { "index": 16, "num_nts": 8, "nts_short": "UGGAAUAG", "nts_long": "///2/866,///2/867,///2/868,///2/869,///2/870,///2/871,///2/872,///2/873" }, { "index": 17, "num_nts": 4, "nts_short": "AUGA", "nts_long": "///2/913,///2/914,///2/915,///2/916" }, { "index": 18, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///2/1033,///2/1034,///2/1035,///2/1036" }, { "index": 19, "num_nts": 6, "nts_short": "CAUAAA", "nts_long": "///2/1079,///2/1080,///2/1081,///2/1082,///2/1083,///2/1084" }, { "index": 20, "num_nts": 3, "nts_short": "GAU", "nts_long": "///2/1086,///2/1087,///2/1088" }, { "index": 21, "num_nts": 1, "nts_short": "G", "nts_long": "///2/1165" }, { "index": 22, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1194,///2/1195" }, { "index": 23, "num_nts": 6, "nts_short": "UUGGCG", "nts_long": "///2/1202,///2/1203,///2/1204,///2/1205,///2/1206,///2/1207" }, { "index": 24, "is_broken": true, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/1417,///2/1423" }, { "index": 25, "num_nts": 10, "nts_short": "UGUACACACC", "nts_long": "///2/1692,///2/1693,///2/1694,///2/1695,///2/1696,///2/1697,///2/1698,///2/1699,///2/1700,///2/1701" }, { "index": 26, "is_broken": true, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1761,///2/1771" }, { "index": 27, "num_nts": 5, "nts_short": "AAGGU", "nts_long": "///2/1834,///2/1835,///2/1836,///2/1837,///2/1838" }, { "index": 28, "num_nts": 8, "nts_short": "GAUCAUUA", "nts_long": "///2/1862,///2/1863,///2/1864,///2/1865,///2/1866,///2/1867,///2/1868,///2/1869" }, { "index": 29, "num_nts": 5, "nts_short": "CCCCC", "nts_long": "///z/120,///z/121,///z/122,///z/123,///z/124" }, { "index": 30, "num_nts": 1, "nts_short": "G", "nts_long": "///z/224" }, { "index": 31, "num_nts": 2, "nts_short": "UA", "nts_long": "///z/329,///z/330" } ], "num_kissingLoops": 1, "kissingLoops": [ { "index": 1, "stem_index": 69, "hairpin_indices": [ 20, 33 ] } ], "num_Aminors": 42, "Aminors": [ { "index": 1, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///2/46 vs ///2/97,///2/433", "A_nt1": { "desc": "///2/46 vs ///2/97", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N7-O2'(hydroxyl)[2.93],N6(amino)-O2(carbonyl)[2.76]" }, "A_nt2": { "desc": "///2/46 vs ///2/433", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 2, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///2/50 vs ///2/49,///2/477", "A_nt1": { "desc": "///2/50 vs ///2/49", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O5'-O2'(hydroxyl)[2.89]" }, "A_nt2": { "desc": "///2/50 vs ///2/477", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.83],N6(amino)-N3[2.99]" } }, { "index": 3, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///2/61 vs ///2/315,///2/335", "A_nt1": { "desc": "///2/61 vs ///2/315", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.76],O2'(hydroxyl)-O2(carbonyl)[2.77]" }, "A_nt2": { "desc": "///2/61 vs ///2/335", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.56]" } }, { "index": 4, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///2/99 vs ///2/97,///2/433", "A_nt1": { "desc": "///2/99 vs ///2/97", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/99 vs ///2/433", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[2.69]" } }, { "index": 5, "type": "II", "desc_short": "A vs U-A (WC)", "desc_long": "///2/170 vs ///2/63,///2/85", "A_nt1": { "desc": "///2/170 vs ///2/63", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.05],N3-O2'(hydroxyl)[2.82]" }, "A_nt2": { "desc": "///2/170 vs ///2/85", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 6, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///2/171 vs ///2/62,///2/86", "A_nt1": { "desc": "///2/171 vs ///2/62", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.27]" }, "A_nt2": { "desc": "///2/171 vs ///2/86", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.01]" } }, { "index": 7, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///2/401 vs ///2/364,///2/396", "A_nt1": { "desc": "///2/401 vs ///2/364", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.73]" }, "A_nt2": { "desc": "///2/401 vs ///2/396", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.45]" } }, { "index": 8, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///2/473 vs ///2/96,///2/434", "A_nt1": { "desc": "///2/473 vs ///2/96", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[2.30]" }, "A_nt2": { "desc": "///2/473 vs ///2/434", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.55],N3-N2(amino)[2.80]" } }, { "index": 9, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///2/493 vs ///2/490,///2/510", "A_nt1": { "desc": "///2/493 vs ///2/490", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/493 vs ///2/510", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.14],N1-O2'(hydroxyl)[3.26]" } }, { "index": 10, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///2/574 vs ///2/490,///2/510", "A_nt1": { "desc": "///2/574 vs ///2/490", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.77],N1-O2'(hydroxyl)[2.64]" }, "A_nt2": { "desc": "///2/574 vs ///2/510", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)*N2(amino)[3.22]" } }, { "index": 11, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///2/604 vs ///2/597,///2/639", "A_nt1": { "desc": "///2/604 vs ///2/597", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/604 vs ///2/639", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.84]" } }, { "index": 12, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///2/605 vs ///2/598,///2/638", "A_nt1": { "desc": "///2/605 vs ///2/598", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.48],N3-N2(amino)[3.04]" }, "A_nt2": { "desc": "///2/605 vs ///2/638", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.56]" } }, { "index": 13, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///2/668 vs ///2/14,///2/1197", "A_nt1": { "desc": "///2/668 vs ///2/14", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.91]" }, "A_nt2": { "desc": "///2/668 vs ///2/1197", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.52],N3-N2(amino)[3.16]" } }, { "index": 14, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///2/669 vs ///2/663,///2/1164", "A_nt1": { "desc": "///2/669 vs ///2/663", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/669 vs ///2/1164", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.66]" } }, { "index": 15, "type": "I", "desc_short": "A vs A-C (~Wobble)", "desc_long": "///2/670 vs ///2/664,///2/1163", "A_nt1": { "desc": "///2/670 vs ///2/664", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.22]" }, "A_nt2": { "desc": "///2/670 vs ///2/1163", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.42]" } }, { "index": 16, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///2/672 vs ///2/671,///2/1161", "A_nt1": { "desc": "///2/672 vs ///2/671", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/672 vs ///2/1161", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.25]" } }, { "index": 17, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///2/811 vs ///2/411,///2/429", "A_nt1": { "desc": "///2/811 vs ///2/411", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/811 vs ///2/429", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.34],N1-O2'(hydroxyl)[2.67]" } }, { "index": 18, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///2/826 vs ///2/36,///2/519", "A_nt1": { "desc": "///2/826 vs ///2/36", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.46]" }, "A_nt2": { "desc": "///2/826 vs ///2/519", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.19]" } }, { "index": 19, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///2/854 vs ///2/108,///2/353", "A_nt1": { "desc": "///2/854 vs ///2/108", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.84],N3-N2(amino)[3.07]" }, "A_nt2": { "desc": "///2/854 vs ///2/353", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 20, "type": "X", "desc_short": "A vs C-A (~Wobble)", "desc_long": "///2/862 vs ///2/803,///2/861", "A_nt1": { "desc": "///2/862 vs ///2/803", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.88]" }, "A_nt2": { "desc": "///2/862 vs ///2/861", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 21, "type": "X", "desc_short": "A vs U-G (~Wobble)", "desc_long": "///2/886 vs ///2/885,///2/901", "A_nt1": { "desc": "///2/886 vs ///2/885", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/886 vs ///2/901", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.95]" } }, { "index": 22, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///2/972 vs ///2/956,///2/967", "A_nt1": { "desc": "///2/972 vs ///2/956", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[3.20]" }, "A_nt2": { "desc": "///2/972 vs ///2/967", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[3.12]" } }, { "index": 23, "type": "II", "desc_short": "A vs C-A (~Wobble)", "desc_long": "///2/996 vs ///2/674,///2/1031", "A_nt1": { "desc": "///2/996 vs ///2/674", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.51],N3-O2'(hydroxyl)[3.18]" }, "A_nt2": { "desc": "///2/996 vs ///2/1031", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 24, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///2/997 vs ///2/673,///2/1032", "A_nt1": { "desc": "///2/997 vs ///2/673", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.39]" }, "A_nt2": { "desc": "///2/997 vs ///2/1032", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.01]" } }, { "index": 25, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///2/1034 vs ///2/1842,///2/1857", "A_nt1": { "desc": "///2/1034 vs ///2/1842", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/1034 vs ///2/1857", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[3.24]" } }, { "index": 26, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///2/1035 vs ///2/1843,///2/1856", "A_nt1": { "desc": "///2/1035 vs ///2/1843", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.09]" }, "A_nt2": { "desc": "///2/1035 vs ///2/1856", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.48],O2'(hydroxyl)-O2(carbonyl)[3.28]" } }, { "index": 27, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///2/1082 vs ///2/1842,///2/1857", "A_nt1": { "desc": "///2/1082 vs ///2/1842", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.18]" }, "A_nt2": { "desc": "///2/1082 vs ///2/1857", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 28, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///2/1143 vs ///2/13,///2/1198", "A_nt1": { "desc": "///2/1143 vs ///2/13", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.34]" }, "A_nt2": { "desc": "///2/1143 vs ///2/1198", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[2.81]" } }, { "index": 29, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///2/1181 vs ///2/1037,///2/1078", "A_nt1": { "desc": "///2/1181 vs ///2/1037", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.42]" }, "A_nt2": { "desc": "///2/1181 vs ///2/1078", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 30, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///2/1194 vs ///2/7,///2/17", "A_nt1": { "desc": "///2/1194 vs ///2/7", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/1194 vs ///2/17", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.46]" } }, { "index": 31, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///2/1241 vs ///2/1266,///2/1516", "A_nt1": { "desc": "///2/1241 vs ///2/1266", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.65],O2'(hydroxyl)-O2(carbonyl)[3.20]" }, "A_nt2": { "desc": "///2/1241 vs ///2/1516", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.19],N3-N2(amino)[2.77]" } }, { "index": 32, "type": "X", "desc_short": "A vs A-A (--)", "desc_long": "///2/1357 vs ///2/11,///2/1200", "A_nt1": { "desc": "///2/1357 vs ///2/11", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N3[2.82]" }, "A_nt2": { "desc": "///2/1357 vs ///2/1200", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 33, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///2/1465 vs ///2/1366,///2/1373", "A_nt1": { "desc": "///2/1465 vs ///2/1366", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.10],N3-N2(amino)[3.10]" }, "A_nt2": { "desc": "///2/1465 vs ///2/1373", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.88],O2'(hydroxyl)-O2(carbonyl)[2.43]" } }, { "index": 34, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///2/1508 vs ///2/1273,///2/1510", "A_nt1": { "desc": "///2/1508 vs ///2/1273", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "N7-N4(amino)[2.82],N6(amino)-O2(carbonyl)[2.57],N6(amino)-N3[3.04]" }, "A_nt2": { "desc": "///2/1508 vs ///2/1510", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N7[2.65]" } }, { "index": 35, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///2/1522 vs ///2/1236,///2/1521", "A_nt1": { "desc": "///2/1522 vs ///2/1236", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.64]" }, "A_nt2": { "desc": "///2/1522 vs ///2/1521", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1*O2(carbonyl)[3.18]" } }, { "index": 36, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///2/1533 vs ///2/1536,///2/1597", "A_nt1": { "desc": "///2/1533 vs ///2/1536", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O4'[3.15],O2'(hydroxyl)-O2'(hydroxyl)[3.16]" }, "A_nt2": { "desc": "///2/1533 vs ///2/1597", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 37, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///2/1569 vs ///2/1613,///2/1626", "A_nt1": { "desc": "///2/1569 vs ///2/1613", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.90],N3-N2(amino)[3.14]" }, "A_nt2": { "desc": "///2/1569 vs ///2/1626", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.05]" } }, { "index": 38, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///2/1580 vs ///2/1402,///2/1444", "A_nt1": { "desc": "///2/1580 vs ///2/1402", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/1580 vs ///2/1444", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.03]" } }, { "index": 39, "type": "X", "desc_short": "A vs U-G (Wobble)", "desc_long": "///2/1588 vs ///2/1653,///2/1671", "A_nt1": { "desc": "///2/1588 vs ///2/1653", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///2/1588 vs ///2/1671", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.92]" } }, { "index": 40, "type": "II", "desc_short": "A vs U-G (Wobble)", "desc_long": "///2/1589 vs ///2/1653,///2/1671", "A_nt1": { "desc": "///2/1589 vs ///2/1653", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[3.17],O2'(hydroxyl)-O2'(hydroxyl)[2.96],N3-O2'(hydroxyl)[3.03]" }, "A_nt2": { "desc": "///2/1589 vs ///2/1671", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 41, "type": "II", "desc_short": "A vs A-U (WC)", "desc_long": "///2/1634 vs ///2/1228,///2/1530", "A_nt1": { "desc": "///2/1634 vs ///2/1228", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.13],N3-O2'(hydroxyl)[2.41]" }, "A_nt2": { "desc": "///2/1634 vs ///2/1530", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 42, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///2/1851 vs ///2/1705,///2/1829", "A_nt1": { "desc": "///2/1851 vs ///2/1705", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[2.41]" }, "A_nt2": { "desc": "///2/1851 vs ///2/1829", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[2.76]" } } ], "num_riboseZippers": 11, "riboseZippers": [ { "index": 1, "num_nts": 4, "nts_short": "AACG", "nts_long": "///2/60,///2/61,///2/315,///2/316" }, { "index": 2, "num_nts": 4, "nts_short": "AAAA", "nts_long": "///2/84,///2/85,///2/149,///2/150" }, { "index": 3, "num_nts": 4, "nts_short": "GCAG", "nts_long": "///2/95,///2/96,///2/473,///2/474" }, { "index": 4, "num_nts": 4, "nts_short": "UAAG", "nts_long": "///2/454,///2/455,///2/1735,///2/1736" }, { "index": 5, "num_nts": 4, "nts_short": "AACC", "nts_long": "///2/604,///2/605,///2/638,///2/639" }, { "index": 6, "num_nts": 4, "nts_short": "AACG", "nts_long": "///2/669,///2/670,///2/1163,///2/1164" }, { "index": 7, "num_nts": 4, "nts_short": "UACG", "nts_long": "///2/1081,///2/1082,///2/1842,///2/1843" }, { "index": 8, "num_nts": 4, "nts_short": "AACC", "nts_long": "///2/1240,///2/1241,///2/1266,///2/1267" }, { "index": 9, "num_nts": 4, "nts_short": "CCCA", "nts_long": "///2/1373,///2/1374,///2/1464,///2/1465" }, { "index": 10, "num_nts": 4, "nts_short": "CACC", "nts_long": "///2/1568,///2/1569,///2/1626,///2/1627" }, { "index": 11, "num_nts": 4, "nts_short": "CGAA", "nts_long": "///2/1705,///2/1706,///2/1850,///2/1851" } ], "num_Kturns": 1, "Kturns": [ { "index": 1, "type": "Normal k-turn", "iloop_index": 69, "bounding_stems": [ 60, 59 ], "Cstem_index": 60, "NCstem_index": 59, "Cstem_pair": "C-G (///2/967,///2/956) WC", "NCstem_pair": "C-G (///2/974,///2/952) WC", "GA_pair": "G-A (///2/971,///2/955) Sheared", "bending_angle": 61.185, "strand1": { "num_nts": 16, "nts_short": "UCUUGGACCGGCGCAA", "nts_long": "///2/966,///2/967,///2/968,///2/969,///2/970,///2/971,///2/972,///2/973,///2/974,///2/975,///2/976,///2/977,///2/978,///2/979,///2/980,///2/981" }, "strand2": { "num_nts": 13, "nts_short": "UUGCGCCGCUAGA", "nts_long": "///2/945,///2/946,///2/947,///2/948,///2/949,///2/950,///2/951,///2/952,///2/953,///2/954,///2/955,///2/956,///2/957" } } ], "num_splayUnits": 159, "splayUnits": [ { "index": 1, "num_nts": 3, "nts_short": "UAC", "nts_long": "///2/1,///2/2,///2/3" }, { "index": 2, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/8,///2/9" }, { "index": 3, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/32,///2/33" }, { "index": 4, "num_nts": 3, "nts_short": "AGA", "nts_long": "///2/40,///2/41,///2/42" }, { "index": 5, "num_nts": 3, "nts_short": "AAG", "nts_long": "///2/45,///2/46,///2/47" }, { "index": 6, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/54,///2/55" }, { "index": 7, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/59,///2/60" }, { "index": 8, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/61,///2/62" }, { "index": 9, "num_nts": 5, "nts_short": "ACGCA", "nts_long": "///2/64,///2/65,///2/66,///2/67,///2/68" }, { "index": 10, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/75,///2/76" }, { "index": 11, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/78,///2/79" }, { "index": 12, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/92,///2/93" }, { "index": 13, "num_nts": 3, "nts_short": "UGG", "nts_long": "///2/112,///2/113,///2/114" }, { "index": 14, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/117,///2/118" }, { "index": 15, "num_nts": 3, "nts_short": "CGC", "nts_long": "///2/125,///2/126,///2/127" }, { "index": 16, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/128,///2/129" }, { "index": 17, "num_nts": 3, "nts_short": "ACU", "nts_long": "///2/141,///2/142,///2/143" }, { "index": 18, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/157,///2/158" }, { "index": 19, "num_nts": 3, "nts_short": "UUC", "nts_long": "///2/160,///2/161,///2/162" }, { "index": 20, "num_nts": 3, "nts_short": "AUA", "nts_long": "///2/171,///2/172,///2/173" }, { "index": 21, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/198,///2/199" }, { "index": 22, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/214,///2/215" }, { "index": 23, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/290,///2/291" }, { "index": 24, "num_nts": 3, "nts_short": "CUC", "nts_long": "///2/293,///2/294,///2/295" }, { "index": 25, "num_nts": 6, "nts_short": "CUCGGG", "nts_long": "///2/304,///2/305,///2/306,///2/307,///2/308,///2/309" }, { "index": 26, "num_nts": 4, "nts_short": "CGAU", "nts_long": "///2/311,///2/312,///2/313,///2/314" }, { "index": 27, "num_nts": 3, "nts_short": "AUC", "nts_long": "///2/360,///2/361,///2/362" }, { "index": 28, "num_nts": 3, "nts_short": "UCG", "nts_long": "///2/368,///2/369,///2/370" }, { "index": 29, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/384,///2/385" }, { "index": 30, "num_nts": 3, "nts_short": "ACC", "nts_long": "///2/398,///2/399,///2/400" }, { "index": 31, "num_nts": 3, "nts_short": "UGA", "nts_long": "///2/406,///2/407,///2/408" }, { "index": 32, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/417,///2/418" }, { "index": 33, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/425,///2/426" }, { "index": 34, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/428,///2/429" }, { "index": 35, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/435,///2/436" }, { "index": 36, "num_nts": 3, "nts_short": "CGG", "nts_long": "///2/450,///2/451,///2/452" }, { "index": 37, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/463,///2/464" }, { "index": 38, "num_nts": 4, "nts_short": "GCAG", "nts_long": "///2/471,///2/472,///2/473,///2/474" }, { "index": 39, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/485,///2/486" }, { "index": 40, "num_nts": 3, "nts_short": "UUA", "nts_long": "///2/487,///2/488,///2/489" }, { "index": 41, "num_nts": 4, "nts_short": "GACC", "nts_long": "///2/499,///2/500,///2/501,///2/502" }, { "index": 42, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/503,///2/504" }, { "index": 43, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/506,///2/507,///2/508" }, { "index": 44, "num_nts": 3, "nts_short": "GAC", "nts_long": "///2/515,///2/516,///2/517" }, { "index": 45, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/524,///2/525" }, { "index": 46, "num_nts": 3, "nts_short": "AAU", "nts_long": "///2/554,///2/555,///2/556" }, { "index": 47, "num_nts": 7, "nts_short": "GGAUCCA", "nts_long": "///2/588,///2/589,///2/590,///2/591,///2/592,///2/593,///2/594" }, { "index": 48, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/599,///2/600" }, { "index": 49, "num_nts": 3, "nts_short": "GUC", "nts_long": "///2/606,///2/607,///2/608" }, { "index": 50, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/619,///2/620" }, { "index": 51, "num_nts": 5, "nts_short": "GUAAU", "nts_long": "///2/626,///2/627,///2/628,///2/629,///2/630" }, { "index": 52, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/631,///2/632" }, { "index": 53, "num_nts": 4, "nts_short": "AGUU", "nts_long": "///2/655,///2/656,///2/657,///2/658" }, { "index": 54, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/659,///2/660" }, { "index": 55, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/662,///2/663" }, { "index": 56, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/665,///2/666" }, { "index": 57, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/670,///2/671" }, { "index": 58, "num_nts": 2, "nts_short": "AG", "nts_long": "///2/672,///2/673" }, { "index": 59, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/683,///2/684" }, { "index": 60, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/687,///2/688" }, { "index": 61, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/798,///2/799" }, { "index": 62, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/810,///2/811" }, { "index": 63, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/820,///2/821" }, { "index": 64, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/822,///2/823" }, { "index": 65, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/846,///2/847" }, { "index": 66, "num_nts": 2, "nts_short": "CG", "nts_long": "///2/851,///2/852" }, { "index": 67, "num_nts": 5, "nts_short": "AUAGG", "nts_long": "///2/870,///2/871,///2/872,///2/873,///2/874" }, { "index": 68, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/887,///2/888" }, { "index": 69, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/890,///2/891" }, { "index": 70, "num_nts": 3, "nts_short": "CAU", "nts_long": "///2/912,///2/913,///2/914" }, { "index": 71, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/916,///2/917" }, { "index": 72, "num_nts": 3, "nts_short": "AGA", "nts_long": "///2/920,///2/921,///2/922" }, { "index": 73, "num_nts": 3, "nts_short": "GGG", "nts_long": "///2/932,///2/933,///2/934" }, { "index": 74, "num_nts": 3, "nts_short": "UGG", "nts_long": "///2/969,///2/970,///2/971" }, { "index": 75, "num_nts": 3, "nts_short": "AGA", "nts_long": "///2/990,///2/991,///2/992" }, { "index": 76, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/1001,///2/1002" }, { "index": 77, "num_nts": 3, "nts_short": "UUU", "nts_long": "///2/1015,///2/1016,///2/1017" }, { "index": 78, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1022,///2/1023" }, { "index": 79, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1033,///2/1034" }, { "index": 80, "num_nts": 2, "nts_short": "GU", "nts_long": "///2/1044,///2/1045" }, { "index": 81, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1057,///2/1058" }, { "index": 82, "num_nts": 3, "nts_short": "AUA", "nts_long": "///2/1060,///2/1061,///2/1062" }, { "index": 83, "num_nts": 8, "nts_short": "AAACGAUG", "nts_long": "///2/1082,///2/1083,///2/1084,///2/1085,///2/1086,///2/1087,///2/1088,///2/1089" }, { "index": 84, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/1113,///2/1114" }, { "index": 85, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1115,///2/1116" }, { "index": 86, "num_nts": 3, "nts_short": "UCC", "nts_long": "///2/1137,///2/1138,///2/1139" }, { "index": 87, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1142,///2/1143" }, { "index": 88, "num_nts": 3, "nts_short": "AAG", "nts_long": "///2/1149,///2/1150,///2/1151" }, { "index": 89, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1152,///2/1153" }, { "index": 90, "num_nts": 3, "nts_short": "UUU", "nts_long": "///2/1154,///2/1155,///2/1156" }, { "index": 91, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1157,///2/1158" }, { "index": 92, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1165,///2/1166" }, { "index": 93, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/1179,///2/1180" }, { "index": 94, "num_nts": 3, "nts_short": "CGA", "nts_long": "///2/1206,///2/1207,///2/1208" }, { "index": 95, "num_nts": 4, "nts_short": "ACCA", "nts_long": "///2/1214,///2/1215,///2/1216,///2/1217" }, { "index": 96, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1239,///2/1240" }, { "index": 97, "num_nts": 2, "nts_short": "UU", "nts_long": "///2/1242,///2/1243" }, { "index": 98, "num_nts": 2, "nts_short": "CU", "nts_long": "///2/1247,///2/1248" }, { "index": 99, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1250,///2/1251" }, { "index": 100, "num_nts": 3, "nts_short": "CAC", "nts_long": "///2/1252,///2/1253,///2/1254" }, { "index": 101, "num_nts": 6, "nts_short": "GGGAAA", "nts_long": "///2/1255,///2/1256,///2/1257,///2/1258,///2/1259,///2/1260" }, { "index": 102, "num_nts": 3, "nts_short": "GGA", "nts_long": "///2/1274,///2/1275,///2/1276" }, { "index": 103, "num_nts": 3, "nts_short": "AGG", "nts_long": "///2/1284,///2/1285,///2/1286" }, { "index": 104, "num_nts": 4, "nts_short": "AUAG", "nts_long": "///2/1299,///2/1300,///2/1301,///2/1302" }, { "index": 105, "num_nts": 3, "nts_short": "GUG", "nts_long": "///2/1325,///2/1326,///2/1327" }, { "index": 106, "num_nts": 3, "nts_short": "GCA", "nts_long": "///2/1330,///2/1331,///2/1332" }, { "index": 107, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1362,///2/1363" }, { "index": 108, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1368,///2/1369" }, { "index": 109, "num_nts": 3, "nts_short": "AUU", "nts_long": "///2/1370,///2/1371,///2/1372" }, { "index": 110, "num_nts": 3, "nts_short": "AUG", "nts_long": "///2/1396,///2/1397,///2/1398" }, { "index": 111, "num_nts": 4, "nts_short": "ACUA", "nts_long": "///2/1402,///2/1403,///2/1404,///2/1405" }, { "index": 112, "num_nts": 3, "nts_short": "CGG", "nts_long": "///2/1427,///2/1428,///2/1429" }, { "index": 113, "num_nts": 3, "nts_short": "GUU", "nts_long": "///2/1461,///2/1462,///2/1463" }, { "index": 114, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1473,///2/1474" }, { "index": 115, "num_nts": 3, "nts_short": "AUU", "nts_long": "///2/1476,///2/1477,///2/1478" }, { "index": 116, "num_nts": 2, "nts_short": "AA", "nts_long": "///2/1483,///2/1484" }, { "index": 117, "num_nts": 3, "nts_short": "CAG", "nts_long": "///2/1488,///2/1489,///2/1490" }, { "index": 118, "num_nts": 3, "nts_short": "CUG", "nts_long": "///2/1493,///2/1494,///2/1495" }, { "index": 119, "num_nts": 3, "nts_short": "UGA", "nts_long": "///2/1496,///2/1497,///2/1498" }, { "index": 120, "num_nts": 5, "nts_short": "AGAUG", "nts_long": "///2/1506,///2/1507,///2/1508,///2/1509,///2/1510" }, { "index": 121, "num_nts": 2, "nts_short": "UG", "nts_long": "///2/1519,///2/1520" }, { "index": 122, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1532,///2/1533" }, { "index": 123, "num_nts": 3, "nts_short": "CUG", "nts_long": "///2/1534,///2/1535,///2/1536" }, { "index": 124, "num_nts": 2, "nts_short": "GC", "nts_long": "///2/1552,///2/1553" }, { "index": 125, "num_nts": 2, "nts_short": "CC", "nts_long": "///2/1557,///2/1558" }, { "index": 126, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1566,///2/1567" }, { "index": 127, "num_nts": 3, "nts_short": "AAC", "nts_long": "///2/1579,///2/1580,///2/1581" }, { "index": 128, "num_nts": 5, "nts_short": "GUUGA", "nts_long": "///2/1584,///2/1585,///2/1586,///2/1587,///2/1588" }, { "index": 129, "num_nts": 3, "nts_short": "UGG", "nts_long": "///2/1602,///2/1603,///2/1604" }, { "index": 130, "num_nts": 2, "nts_short": "AU", "nts_long": "///2/1620,///2/1621" }, { "index": 131, "num_nts": 3, "nts_short": "UAU", "nts_long": "///2/1622,///2/1623,///2/1624" }, { "index": 132, "num_nts": 2, "nts_short": "GA", "nts_long": "///2/1636,///2/1637" }, { "index": 133, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1638,///2/1639" }, { "index": 134, "num_nts": 2, "nts_short": "CA", "nts_long": "///2/1660,///2/1661" }, { "index": 135, "num_nts": 3, "nts_short": "AGC", "nts_long": "///2/1664,///2/1665,///2/1666" }, { "index": 136, "num_nts": 3, "nts_short": "UAC", "nts_long": "///2/1694,///2/1695,///2/1696" }, { "index": 137, "num_nts": 6, "nts_short": "ACACCG", "nts_long": "///2/1697,///2/1698,///2/1699,///2/1700,///2/1701,///2/1702" }, { "index": 138, "num_nts": 3, "nts_short": "UUG", "nts_long": "///2/1720,///2/1721,///2/1722" }, { "index": 139, "num_nts": 4, "nts_short": "AAAG", "nts_long": "///2/1823,///2/1824,///2/1825,///2/1826" }, { "index": 140, "num_nts": 3, "nts_short": "AAG", "nts_long": "///2/1834,///2/1835,///2/1836" }, { "index": 141, "num_nts": 3, "nts_short": "GUU", "nts_long": "///2/1837,///2/1838,///2/1839" }, { "index": 142, "num_nts": 2, "nts_short": "GG", "nts_long": "///2/1861,///2/1862" }, { "index": 143, "num_nts": 2, "nts_short": "UC", "nts_long": "///2/1864,///2/1865" }, { "index": 144, "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1868,///2/1869" }, { "index": 145, "num_nts": 3, "nts_short": "GAG", "nts_long": "///z/135,///z/136,///z/137" }, { "index": 146, "num_nts": 2, "nts_short": "GA", "nts_long": "///z/153,///z/154" }, { "index": 147, "num_nts": 2, "nts_short": "AC", "nts_long": "///z/165,///z/166" }, { "index": 148, "num_nts": 2, "nts_short": "UG", "nts_long": "///z/228,///z/229" }, { "index": 149, "num_nts": 2, "nts_short": "GU", "nts_long": "///z/233,///z/234" }, { "index": 150, "num_nts": 2, "nts_short": "AG", "nts_long": "///z/252,///z/253" }, { "index": 151, "num_nts": 2, "nts_short": "UC", "nts_long": "///z/269,///z/270" }, { "index": 152, "num_nts": 2, "nts_short": "UU", "nts_long": "///z/281,///z/282" }, { "index": 153, "num_nts": 2, "nts_short": "GU", "nts_long": "///z/283,///z/284" }, { "index": 154, "num_nts": 2, "nts_short": "UG", "nts_long": "///z/290,///z/291" }, { "index": 155, "num_nts": 3, "nts_short": "AUA", "nts_long": "///z/296,///z/297,///z/298" }, { "index": 156, "num_nts": 2, "nts_short": "UU", "nts_long": "///z/305,///z/306" }, { "index": 157, "num_nts": 2, "nts_short": "CC", "nts_long": "///z/314,///z/315" }, { "index": 158, "num_nts": 3, "nts_short": "GUC", "nts_long": "///z/323,///z/324,///z/325" }, { "index": 159, "num_nts": 2, "nts_short": "UA", "nts_long": "///z/329,///z/330" } ], "num_HtypePknots": 3, "HtypePknots": [ { "index": 1, "desc": "stem#123(hairpin#37) vs stem#124(hairpin#38) L1 groove=MAJOR nts=3 UUG ///z/305,///z/306,///z/307" }, { "index": 2, "desc": "stem#123(hairpin#37) vs stem#124(hairpin#38) L2 groove=----- nts=1 U ///z/312" }, { "index": 3, "desc": "stem#123(hairpin#37) vs stem#124(hairpin#38) L3 groove=----- nts=10 CCCGGGAGGU ///z/315,///z/316,///z/317,///z/318,///z/319,///z/320,///z/321,///z/322,///z/323,///z/324" } ], "pseudoknot_order": 4, "pseudoknot_nts": [ { "index": 1, "symbols": "[]", "num_nts": 32, "nts_short": "AUCCUUAGGCCGUUAAUAGGAUAUCGAGCUCG", "nts_long": "///2/11,///2/12,///2/13,///2/14,///2/15,///2/87,///2/500,///2/600,///2/601,///2/621,///2/622,///2/656,///2/666,///2/667,///2/1144,///2/1145,///2/1156,///2/1196,///2/1197,///2/1198,///2/1199,///2/1201,///z/288,///z/297,///z/308,///z/309,///z/310,///z/311,///z/325,///z/326,///z/327,///z/328" }, { "index": 2, "symbols": "{}", "num_nts": 6, "nts_short": "CCCGGG", "nts_long": "///2/1116,///2/1117,///2/1118,///z/266,///z/267,///z/268" }, { "index": 3, "symbols": "<>", "num_nts": 2, "nts_short": "CG", "nts_long": "///2/1085,///2/1861" }, { "index": 4, "symbols": "Aa", "num_nts": 2, "nts_short": "UA", "nts_long": "///2/1115,///z/136" } ], "dbn": { "all_chains": { "num_nts": 1859, "num_chars": 1872, "bseq": "UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCG&ACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGUGCAUUUAUCAG&UGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCC&GGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUCGUAGUUGGAUCUUGGGAGCGG&CCGUCCCC&UGC&UCGGCGCC&GGCCCGAAGCGUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCC&GCCUGGAUACCGCAGCUAGGAAUAAUGGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUUAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUACCGUCGUAGUUCCGACCAUAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAUGGUUGCAAAGCUGAAACUUAAAGGAAUUUGGCGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCC&CGGUCGGCGU&AACUUCUUAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUGAACGAGGAAUUCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGU&GCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA&CCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAU&GAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUA", "sstr": "...((((...[[[[[.))))((..((((((...(.((..((.....(((.(((..((....((....((..........))...))[))......(((.......(((.(.(..((....(((.....((&...((.....((..((.....))..))......))......)).((((...(((((......)))))...)))).(..(((((..&.(......)..)))))......)..(.((...(((..&.)))..)))...)))...))).).))).(((....(((....(((((((.........))))))))))......)))...(((.((((....))))....)))))).((.(((..........))).)).(.((....)).)...)))))).).....(.(((...((((.]...))).))))).)...)).)......((..((((.(((....)))..))))...)).....(.((..(...........)..))......)...(((([[......((((.....((..]])).......)))).))))...))))))..))..[......(.([[...(.(.((...(((..(....(((..((.&.))..)))&.((&((.(.(((&)))).)).))..(((.((.(.......((..((.......)).(((.&)))....))......).).)..)))........(.(..((((((.................))))))..).)....)....(((.((...(...((((..((..((((((((...((........))......))))))))..)).......((....))...))))..)...))..))..))))...)).)....((((((....(...((((.........))))...).))))))......<...(((.((..((..(.((((((.((.(.A{{{.).)))))))).)..))....((..]]))...))...].))))).).(((......((((....))))....)))..]]]].]......(((((((..((..(((((..(((..(((((.......(........)...........(((....(...(((((.....(..((..((........))..))....).)))))...((.(((.....((((.(......(.((............(.((......)))...)).)......(((...(...(..(..((((((((((((.&.)))).))))&))))..)..)..).....(((((.....)))))........))).....)).))).......))))).....)...)))...)).)))..))).(...((.(((........(.......(((...((....))...)))....).........))).))......(.....(((((..........))))).....)..)..))))).....(((((.((.......)).)))))......))...)))))))..........(..((.(..(((..((..(..(((((.(.(((..(.((.((...((.(((.((((...(.&.)...))).).).)).))...)).)).)..)))..)))))).)..))..)))...).))...).....((((((((......))))))))>........&.....(((((((((((a((((((((.((((((((..((((((....))))))(((&.))).((((..)))))))).)))).))))(((.....((...}}}..))....)))(..)))))[)).(((..].))).((...[[[[.))))))))))).]]]]..", "form": "...AAA...A.A.A..AAA......AAAAAA...............A...AA...A.....A.....A........A..A....A.AAA.....AA.........AAA.A....A...AAAA......Z-&...AA.A...A..............A......AAA......Z..AAAA....AAA.......AAAA....AAA.A..A.AAAA.-&.AA.....A..AAA.............A.A..AA..-&..A.A.A.AA..AAAAA.A....AAA..AA.....AAA....AA.AAA.AA...B...AAA.A..AAA......AAA...AAA.AA...A..AAAA....AAAAA.....AA.A.........AA.A...A.AA..Z.A......A...AA.........AA..AA.AAA.....AA...AAAAA....AAA.....AAAA........AA....AA..........AAAA..AA.A.....A..A.A.AAA..............A..A.A.......AAA......A...A.A........AAAAA.A.....AAAA.AA.A.....Z.....A.A......AAA....AA..A......AA....-&.....A.-&..-&A.....A-&.............A..A..A...AA..A..AA.....A..A...A.-&AA.AA..AA.....AAA.A...AA..............A..A....................A....AA.......A.....AAAA.A..A...AAAAAAA..AAAA.AA.....A..A......A......AAAAAAAAAAA..B..Z...AA.AA.A....AAAA.A.AAAA...A..Z..A....A.A.....AAAAAA..AA....AAA.A........AAA....A.AA.A............AAA.A..AA..AAAAAA.A..AA....A.A....AA.AA......AAA...AA..A.A....A......AA.A....A.......AA..A.....AA..AA.A...A.AA.........AA.AAA...AA..AA.A...AAAA.AAAAA.............A..............AA..........AAA.............A.....................AAAA.AAAA..AA......AAAAA.....A.....Z.............AAA....AA.A...A..AA.A...AAAAA....AA......AAAA.AAAAAA-&.AAA..A.A-&AA.......A.AA....AAAAAA.....AAAA.A......AAAA..A.AA..AA...A.....AAAA.....AAA...A......AAA..AAAA....AAAAAA.......A..............AA....A.....A...........A...AA.AA..........AA.AAAA.A.........AAAAAA..A.....A.A.AA......A.AA.AAA.......AAAA.AA.......AA.AA.AAAAA.AA...........A...A.AA..AA......AA.A....AA...AAAAA.....A..............-&...A....B....A..A..A.A..AAA...AAA..A..A.A....A.AAAA....A....AA......AAAAAAAA......AAAAAA..........-&.....AAAA.AAAA....AAA.A...AAA.AAA....A.A......AA.AA.A.-&A....AA....B.A.AAA..AAAA.AA..AA......A....AA.........AAA....AA..AB.AAA.....A...AA...AA...A.AAA.AAAA....A..-" }, "chain_2": { "num_nts": 1697, "num_chars": 1708, "bseq": "UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCG&ACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGUGCAUUUAUCAG&UGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCC&GGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUCGUAGUUGGAUCUUGGGAGCGG&CCGUCCCC&UGC&UCGGCGCC&GGCCCGAAGCGUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCC&GCCUGGAUACCGCAGCUAGGAAUAAUGGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUUAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUACCGUCGUAGUUCCGACCAUAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAUGGUUGCAAAGCUGAAACUUAAAGGAAUUUGGCGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCC&CGGUCGGCGU&AACUUCUUAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUGAACGAGGAAUUCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGU&GCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA", "sstr": "...((((...[[[[[.))))((..((((((...(.((..((.....(((.(((..((....((....((..........))...))[))......(((.......(((.(.(..((....(((.....((&...((.....((..((.....))..))......))......)).((((...(((((......)))))...)))).(..(((((..&.(......)..)))))......)..(.((...(((..&.)))..)))...)))...))).).))).(((....(((....(((((((.........))))))))))......)))...(((.((((....))))....)))))).((.(((..........))).)).(.((....)).)...)))))).).....(.(((...((((.]...))).))))).)...)).)......((..((((.(((....)))..))))...)).....(.((..(...........)..))......)...(((([[......((((.....((..]])).......)))).))))...))))))..))..[......(.([[...(.(.((...(((..(....(((..((.&.))..)))&.((&((.(.(((&)))).)).))..(((.((.(.......((..((.......)).(((.&)))....))......).).)..)))........(.(..((((((.................))))))..).)....)....(((.((...(...((((..((..((((((((...((........))......))))))))..)).......((....))...))))..)...))..))..))))...)).)....((((((....(...((((.........))))...).))))))......<...(((.((..((..(.((((((.((.(.A{{{.).)))))))).)..))....((..]]))...))...].))))).).(((......((((....))))....)))..]]]].]......(((((((..((..(((((..(((..(((((.......(........)...........(((....(...(((((.....(..((..((........))..))....).)))))...((.(((.....((((.(......(.((............(.((......)))...)).)......(((...(...(..(..((((((((((((.&.)))).))))&))))..)..)..).....(((((.....)))))........))).....)).))).......))))).....)...)))...)).)))..))).(...((.(((........(.......(((...((....))...)))....).........))).))......(.....(((((..........))))).....)..)..))))).....(((((.((.......)).)))))......))...)))))))..........(..((.(..(((..((..(..(((((.(.(((..(.((.((...((.(((.((((...(.&.)...))).).).)).))...)).)).)..)))..)))))).)..))..)))...).))...).....((((((((......))))))))>........", "form": "...AAA...A.A.A..AAA......AAAAAA...............A...AA...A.....A.....A........A..A....A.AAA.....AA.........AAA.A....A...AAAA......Z-&...AA.A...A..............A......AAA......Z..AAAA....AAA.......AAAA....AAA.A..A.AAAA.-&.AA.....A..AAA.............A.A..AA..-&..A.A.A.AA..AAAAA.A....AAA..AA.....AAA....AA.AAA.AA...B...AAA.A..AAA......AAA...AAA.AA...A..AAAA....AAAAA.....AA.A.........AA.A...A.AA..Z.A......A...AA.........AA..AA.AAA.....AA...AAAAA....AAA.....AAAA........AA....AA..........AAAA..AA.A.....A..A.A.AAA..............A..A.A.......AAA......A...A.A........AAAAA.A.....AAAA.AA.A.....Z.....A.A......AAA....AA..A......AA....-&.....A.-&..-&A.....A-&.............A..A..A...AA..A..AA.....A..A...A.-&AA.AA..AA.....AAA.A...AA..............A..A....................A....AA.......A.....AAAA.A..A...AAAAAAA..AAAA.AA.....A..A......A......AAAAAAAAAAA..B..Z...AA.AA.A....AAAA.A.AAAA...A..Z..A....A.A.....AAAAAA..AA....AAA.A........AAA....A.AA.A............AAA.A..AA..AAAAAA.A..AA....A.A....AA.AA......AAA...AA..A.A....A......AA.A....A.......AA..A.....AA..AA.A...A.AA.........AA.AAA...AA..AA.A...AAAA.AAAAA.............A..............AA..........AAA.............A.....................AAAA.AAAA..AA......AAAAA.....A.....Z.............AAA....AA.A...A..AA.A...AAAAA....AA......AAAA.AAAAAA-&.AAA..A.A-&AA.......A.AA....AAAAAA.....AAAA.A......AAAA..A.AA..AA...A.....AAAA.....AAA...A......AAA..AAAA....AAAAAA.......A..............AA....A.....A...........A...AA.AA..........AA.AAAA.A.........AAAAAA..A.....A.A.AA......A.AA.AAA.......AAAA.AA.......AA.AA.AAAAA.AA...........A...A.AA..AA......AA.A....AA...AAAAA.....A..............-&...A....B....A..A..A.A..AAA...AAA..A..A.A....A.AAAA....A....AA......AAAAAAAA......AAAAAA..........-" }, "chain_z": { "num_nts": 162, "num_chars": 163, "bseq": "CCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAU&GAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUA", "sstr": ".....(((((((((((a((((((((.((((((((..((((((....))))))(((&.))).((((..)))))))).)))).))))(((.....((...}}}..))....)))(..)))))[)).(((..].))).((...[[[[.))))))))))).]]]]..", "form": ".....AAAA.AAAA....AAA.A...AAA.AAA....A.A......AA.AA.A.-&A....AA....B.A.AAA..AAAA.AA..AA......A....AA.........AAA....AA..AB.AAA.....A...AA...AA...A.AAA.AAAA....A..-" } }, "chains": { "chain_2": { "num_nts": 1697, "bseq": "UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCG&ACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGUGCAUUUAUCAG&UGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCC&GGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUCGUAGUUGGAUCUUGGGAGCGG&CCGUCCCC&UGC&UCGGCGCC&GGCCCGAAGCGUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCC&GCCUGGAUACCGCAGCUAGGAAUAAUGGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUUAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUACCGUCGUAGUUCCGACCAUAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAUGGUUGCAAAGCUGAAACUUAAAGGAAUUUGGCGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCC&CGGUCGGCGU&AACUUCUUAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUGAACGAGGAAUUCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGU&GCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA", "sstr": "...((((...[[[[[.))))((..((((((...(.((..((.....(((.(((..((....((....((..........))...))[))......(((.......(((.(.(..((....(((.....((&...((.....((..((.....))..))......))......)).((((...(((((......)))))...)))).(..(((((..&.(......)..)))))......)..(.((...(((..&.)))..)))...)))...))).).))).(((....(((....(((((((.........))))))))))......)))...(((.((((....))))....)))))).((.(((..........))).)).(.((....)).)...)))))).).....(.(((...((((.]...))).))))).)...)).)......((..((((.(((....)))..))))...)).....(.((..(...........)..))......)...(((([[......((((.....((..]])).......)))).))))...))))))..))..[......(.([[...(.(.((...(((..(....(((..((.&.))..)))&.((&((.(.(((&)))).)).))..(((.((.(.......((..((.......)).(((.&)))....))......).).)..)))........(.(..((((((.................))))))..).)....)....(((.((...(...((((..((..((((((((...((........))......))))))))..)).......((....))...))))..)...))..))..))))...)).)....((((((....(...((((.........))))...).))))))......<...(((.((..((..(.((((((.((.(.A{{{.).)))))))).)..))....((..]]))...))...].))))).).(((......((((....))))....)))..]]]].]......(((((((..((..(((((..(((..(((((.......(........)...........(((....(...(((((.....(..((..((........))..))....).)))))...((.(((.....((((.(......(.((............(.((......)))...)).)......(((...(...(..(..((((((((((((.&.)))).))))&))))..)..)..).....(((((.....)))))........))).....)).))).......))))).....)...)))...)).)))..))).(...((.(((........(.......(((...((....))...)))....).........))).))......(.....(((((..........))))).....)..)..))))).....(((((.((.......)).)))))......))...)))))))..........(..((.(..(((..((..(..(((((.(.(((..(.((.((...((.(((.((((...(.&.)...))).).).)).))...)).)).)..)))..)))))).)..))..)))...).))...).....((((((((......))))))))>........", "form": "...AAA...A.A.A..AAA......AAAAAA...............A...AA...A.....A.....A........A..A....A.AAA.....AA.........AAA.A....A...AAAA......Z-&...AA.A...A..............A......AAA......Z..AAAA....AAA.......AAAA....AAA.A..A.AAAA.-&.AA.....A..AAA.............A.A..AA..-&..A.A.A.AA..AAAAA.A....AAA..AA.....AAA....AA.AAA.AA...B...AAA.A..AAA......AAA...AAA.AA...A..AAAA....AAAAA.....AA.A.........AA.A...A.AA..Z.A......A...AA.........AA..AA.AAA.....AA...AAAAA....AAA.....AAAA........AA....AA..........AAAA..AA.A.....A..A.A.AAA..............A..A.A.......AAA......A...A.A........AAAAA.A.....AAAA.AA.A.....Z.....A.A......AAA....AA..A......AA....-&.....A.-&..-&A.....A-&.............A..A..A...AA..A..AA.....A..A...A.-&AA.AA..AA.....AAA.A...AA..............A..A....................A....AA.......A.....AAAA.A..A...AAAAAAA..AAAA.AA.....A..A......A......AAAAAAAAAAA..B..Z...AA.AA.A....AAAA.A.AAAA...A..Z..A....A.A.....AAAAAA..AA....AAA.A........AAA....A.AA.A............AAA.A..AA..AAAAAA.A..AA....A.A....AA.AA......AAA...AA..A.A....A......AA.A....A.......AA..A.....AA..AA.A...A.AA.........AA.AAA...AA..AA.A...AAAA.AAAAA.............A..............AA..........AAA.............A.....................AAAA.AAAA..AA......AAAAA.....A.....Z.............AAA....AA.A...A..AA.A...AAAAA....AA......AAAA.AAAAAA-&.AAA..A.A-&AA.......A.AA....AAAAAA.....AAAA.A......AAAA..A.AA..AA...A.....AAAA.....AAA...A......AAA..AAAA....AAAAAA.......A..............AA....A.....A...........A...AA.AA..........AA.AAAA.A.........AAAAAA..A.....A.A.AA......A.AA.AAA.......AAAA.AA.......AA.AA.AAAAA.AA...........A...A.AA..AA......AA.A....AA...AAAAA.....A..............-&...A....B....A..A..A.A..AAA...AAA..A..A.A....A.AAAA....A....AA......AAAAAAAA......AAAAAA..........-", "helical_rise": 0.003, "helical_rise_std": 3.560, "helical_axis": [ -0.825, -0.559, -0.080 ], "point1": [ 187.345, 183.730, 183.190 ], "point2": [ 183.042, 180.814, 182.771 ], "num_chars": 5089, "suite": "U4pA2[C!!C!!U1aG1aG7rU!!U!!G!!A1aU1cC1cC1aU1aG1LC1aC1aA1cG1aU1aA1eG1aC1bA!!U1aA1aU1aG1aC1aU1aU!!G1aU1aC1aU1cC1aA!!A1aA!!G!!A1tU!!U1zA!!A6jG1aC1fC&aA1cU1aG1aC1aA5pU!!G1aU!!C4nU1gA1aA3dG1aU7rA4dC7dG!!C!!A1cC1cG7aG1[C!!C!!G!!G7dU!!A1aC7dA1aG1aU1cG7aA1aA1aA1aC1aU1aG1aC1aG1aA5qA2aU1aG1aG1aC1aU1bC6gA1cU1aU!!A!!A6nA1aU1aC1aA1aG1aU1cU1aA1aU!!G!!G!!U1aU1aC3aC1aU1aU1aU1aG1aG1aU1aC!!G2[C2[U!!C!!G..A!!C!!U0aU1aG1bG!!A1aU1aA1aA1aC1aU1aG1cU!!G!!G1aU1gA1aA1bU!!U!!C!!U1aA1aG1aA1aG!!C1LU1cA1bA!!U2aA1aC1cA1aU1cG1eC1aC!!G1LA5zC!!G!!G1cG1aC1cG1cC1aU1cG!!A!!C!!C1aC1cC1aC&aU1aU1gC7aG1aC1aG1aG1aG1aG1cG1aG1aG7aA1aU1cG!!C1aG1bU2aG1aC1aA1aU1aU1aU1aA1aU1aC1aA1LG..U!!G1aG1aU!!G1cA7rC4pU2aC1aU1aA1aG1aA1aU1aA1cA1aC1aC3bU!!C!!G2[G!!G1aC1aC!!G4pA2aU1aC1aG1aC1aA!!C1cG1aC1cC1aC..G1cG1aC1aG1aG1aC!!G1aA1aC1aG1aA&aC1cC1aC1aA1aU1aU1aC!!G1aA1aA1LC1cG1aU1aC1aU1aG1eC7aC1aC1aU1[A6pU!!C1[A!!A1aC1aU1aU!!U!!C!!G6nA1aU1aG1aG1aU1aA1cG1aU1aC1aG!!C1cC!!G!!U!!G!!C1aC1cU1aA1aC1cC1aA1bU0iG1aG1aU1aG!!A!!C!!C0aA1aC1aG1aG1aG1aU7pG!!A!!C1aG1aG1aG1cG1aA1aA1aU1aC1gA1aG1aG1cG1aU1aU1aC1aG!!A1aU!!U2aC1aC1aG1aG1aA1aG!!A6dG1aG1cG1aA1aG1aC1aC1aU1aG1gA!!G!!A!!A!!A!!C7dG!!G1aC1aU!!A1mC1aC1aA1aC1aA&aU1aC1aC!!A!!A!!G1cG1aA1aA1fG!!G!!C3dA!!G1aC1cA1aG1aG1aC1aG1aC1LG!!C1aA7aA3bA!!U2hU!!A1aC1aC!!C!!A1aC1aU!!C1aC1aC1aG!!A2aC!!C2[C2aG1aG1aG7pG0kA1aG1aG1aU1aA1aG1aU1aG7pA4dC1aG1aA1aA1aA1aA1cA1aU!!A1aA1aC1aA1aA1aU1fA!!C!!A!!G1aG!!A!!C1aU1cC1aU1gU!!U1cC!!G1aA1aG1cG5nC5jC!!C!!U1aG!!U!!A!!A!!U1aU1aG1cG!!A1cA!!U1aG1aA1aG1aU1aC1fC1aA1eC1aU1aU1aU1gA1aA1cA1aU1aC1aC1aU1aU1aU!!A1aA1fC1aG1[A!!G4dG!!A!!U6pC2aC!!A0iU1aU1cG1cG1aA3dG1aG1aG5zC0iA1aA!!G2uU!!C1aU1aG1aG1aU1tG!!C6nC1aA1cG1aC1aA1gG1aC1aC1cG1aC1cG1[G!!U!!A4pA8dU1[U2aC1aC1cA1aG1aC1aU1aC1aC1aA1aA!!U!!A!!G1aC1aG1aU1aA1cU1aA1aU1aU1aA1aA!!A6pG6dU3bU6gG!!C1aU5zG4aC1fA1aG3dU1aU!!A!!A1LA7rA!!A!!G1aC1aU1aC1aG1aU1cA1aG1aU1aU1cG&aG1aA1aU7rC!!U!!U!!G1aG1aG1aA1aG1aC!!G1aG..C1LC1aG!!U1aC1aC1aC1LC..U!!G1aC..U1aC1tG!!G!!C!!G1fC1aC..G1aG1aC7aC1aC1LG1aA&aA1mG1tC!!G!!U1cU1cU1aA1aC1LU1aU1aU1aG1aA1aA1eA!!A1aA1aA1aU1aU1aA1aG1aA1aG1aU!!G!!U5dU1aC1aA1aA1cA1aG1bC!!A1cG1aG1cC!!C..G1aC1aC!!U1aG1aG!!A1cU1aA1aC1aC9aG1aC1aA1aG1aC1aU1aA1cG1mG1bA4gA1aU1aA1aA1aU1aG1bG2zA!!A6pU!!A!!G!!G!!A1aC&aC1cG!!C1aG1cG1aU1aU1aC!!U!!A1tU2gU1LU!!U!!G1fU!!U1aG!!G7aU7aU!!U1LU1aC!!G1aG1aA!!A1aC!!U!!G1aA1aG1aG1aC1[C!!A!!U1aG1[A!!U1bU2[A!!A8dG!!A1aG1aG1aG1aA1aC1aG1aG!!C1aC1aG!!G7dG1cG1aG1aC1aA1cU1aU1aC1aG!!U1aA1aU1aU1aG1aC1aG1aC1aC1aG1aC1cU1bA0iG1aA1eG1aG1aU!!G!!A!!A!!A1aU1aU1aC1cU7rU6pG!!G0aA1aC1aC1aG1aG1aC1cG1aC1aA1aA1aG1aA1aC1bG0aG1aA1aC5zC!!A2hG!!A1aG1aC1aG1gA1aA1aA!!G1aC1bA!!U1aU1aU1aG1aC1aC1aA1aA1aG1aA1aA1aU1aG1aU7pU!!U1aU1aC1bA4bU6gU!!A1aA1aU1cC1fA1aA1aG1aA1aA1aC1aG3aA1aA1aA1aG1aU1aC1aG1cG1aA1aG1cG!!U1aU!!C1aG1fA1aA1aG1aA1aC1aG!!A1aU1aC1gA1aG7rA!!U5jA1aC1aC1aG1aU1cC1aG7aU1aA!!G1aU1mU1aC1aC!!G1aA1fC1aC1bA0aU1fA!!A6jA!!C6pG2uA!!U!!G1aC1aC1aG1aA1aC1aC1fG1aG1aC!!G1fA1aU1aG1aC1aG1aG1aC1aG1aG!!C1aG!!U1aU1aA!!U1bU2aC1aC!!C1aA1cU!!G1aA1aC1aC1aC1fG1aC1aC1aG1aG1aG1aC1cA1aG1aC1aU1aU!!C4dC1aG1aG1aG1gA1LA1aA1cC1aC!!A!!A!!A!!G1aU!!C!!U!!U2[U!!G8dG1aG1aU1cU1aC1aC1aG1bG4aG1aG1cG1aG5zA4sG0aU1aA1aU1aG1aG1aU1aU1aG1gC1aA1aA1cA1aG1aC1aU1aG1eA1aA1aA!!C1aU1aU1bA0iA1aA1cG1aG1aA1aA!!U1LU!!U!!G!!G1eC1gG!!A1aA1aG1cG1aG1aC1aA!!C8dC!!A1aC1aC1aA1cG1aG1aA!!G1aU1aG1mG1mA1aG1aC1aC1aU1aG1aC1aG1aG!!C1aU1aU1gA1aA!!U6dU1aU1aG1aA1bC6dU1cC5zA!!A1aC3bA6jC1aG!!G!!G!!A9aA7dA1aC1aC1aU!!C6nA1mC1aC1aC!!G7aG1cC!!C!!C2oG!!G3aA1aC1aA1aC1aG1cG!!A1aC7rA!!G!!G4gA!!U1aU1aG1cA&aC1fA!!G1mA1aU1aU!!G!!A7pU!!A!!G!!C1cU1aC1aU!!U!!U1cC!!U!!C1bG!!A6gU1cU1aC1aC!!G1aU1cG1aG1aG1aU1aG1aG7pU6jG1aG1aU!!G6pC!!A1cU1aG1aG1aC1aC1aG1aU1aU5zC!!U4gU1bA4aG1aU1aU1eG1aG1aU1fG!!G!!A5qG!!C!!G1aA!!U1aU1mU1cG5qU!!C4nU1aG1aG1aU1aU1gA1LA!!U6gU1cC1aC1aG1aA!!U!!A0iA1aC1aG1fA1aA1aC1aG1aA1aG1aA1aC1aU1aC1aU1aG1aG1[C!!A!!U6jG1aC1aU1cA!!A7pC!!U2aA1cG1aU1aU!!A1aC1aG1aC1aG1aA1aC1aC1aC..C1LG1aG!!U1aC!!G!!G1aC!!G1aU..A!!A1aC1bU!!U1aC1mU1LU1bA4nG1aA1cG1aG1aG1zA6gC!!A4gA1aG1aU1aG1aG1aC1aG!!U!!U6nC1LA!!G1aC1aC1aA1aC1aC1aC!!G1gA1aG!!A!!U8dU1aG!!A1aG1aC1LA3aA1aU1aA1aA1bC!!A!!G1aG1aU7rC!!U6dG1aU7pG!!A1aU3aG1aC1aC1aC1aU1aU3bA!!G2[A4pU2aG1aU1aC1aC1aG1eG1cG1aG1aC5qU2aG!!C!!A1cC1aG1cC1aG1aC1cG1aC1aU1cA1aC5nA!!C6pU2aG1aA1aC1aU1cG1aG1aC1aU&aC1cA1LG1cC!!G1aU1aG!!U!!G2zC!!C5zU!!A2aC7dC1aC1cU3aA1aC1aG1cC1aC1aG!!G1aC1LA1cG1aG7aC!!G1cC!!G1aG1aG!!U0aA!!A2[C2aC1aC5zG!!U!!U!!G!!A1aA1aC1cC1aC1aC1aA1cU1aU1aC1bG4bU6nG!!A0aU!!G!!G1aG!!G!!A1aU1aC1aG1aG1aG1aG1cA7aU1aU1LG1gC1aA1bA!!U2zU!!A5dU1aU1aC1aC1aC1aC1aA1aU1bG0aA1aA1aC1[G0bA!!G3aG1aA1aA1aU1aU1aC1aC!!C3bA!!G#aU7aA1aA1aG1aU1LG1aC1cG1aG1aG1aU!!C1gA!!U1bA0bA!!G2aC1aU1aU1cG1aC!!G1aU1aU1aG!!A!!U!!U1aA1bA!!G1aU1bC6gC1aC1aU1cG1aC1aC1cC1aU1aU1aU1aG1aU!!A2aC1tA6pC!!A3bC6pC2aG1aC1aC1aC1aG1aU1aC1aG1aC1aU1aA1aC7aU!!A1aC1aC1aG7aA1aU!!U!!G1aG1aA1aU1cG1aG1aU7aU1aU1aA1aG1cU1LG7aA1aG1aG1aC1aC1aC1aU1cC!!G!!G0aA1aU1aC1fG1aG1cC!!C1aC1aC!!G1aC!!C!!G1mG!!G1LG1mU..G7aC1cC1aC1cU!!G!!G1LC!!G1aG!!A!!G!!C!!G1aC1aU1aG1aA1aG7aA1aA1aG1aA1aC1aG1aG1aU1aC!!G7aA1aA1aC1aU1aU1aG1aA1aC1aU1aA1cU!!C1aU1aA1aG3aA1aG1aG1aA1cA1aG1aU1aA!!A!!A1eA!!G1aU1aC!!G1bU!!A1aA1aC!!A!!A!!G0aG!!U!!U!!U1aC1aC1aG1aU1cA1aG1aG1aU!!G1aA!!A!!C1aC1aU1aG1aC1aG1cG1aA1bA!!G!!G!!A2aU!!C2aA1bU!!U!!A" }, "chain_z": { "num_nts": 162, "bseq": "CCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAU&GAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUA", "sstr": ".....(((((((((((a((((((((.((((((((..((((((....))))))(((&.))).((((..)))))))).)))).))))(((.....((...}}}..))....)))(..)))))[)).(((..].))).((...[[[[.))))))))))).]]]]..", "form": ".....AAAA.AAAA....AAA.A...AAA.AAA....A.A......AA.AA.A.-&A....AA....B.A.AAA..AAAA.AA..AA......A....AA.........AAA....AA..AB.AAA.....A...AA...AA...A.AAA.AAAA....A..-", "helical_rise": 0.265, "helical_rise_std": 3.333, "helical_axis": [ 0.415, -0.907, 0.073 ], "point1": [ 101.085, 255.303, 150.308 ], "point2": [ 118.557, 217.156, 153.392 ], "num_chars": 484, "suite": "C!!C!!C1aC!!C!!C1aC1aU1aC1aC1cC1aG1aG1aG1aA1aG!!A4aG1aC1aC!!A1mU1cA1aG!!U1aG1cG1aU1aC1aU1aG1aC1aG1bG!!A1aA1tC!!C1cG1aG1cU!!G!!A4nG1eU!!A5nC!!A1cC!!C1aG1cG1aA1aA1LU..G1aA1aU1cU7aU!!G1cG1aG!!C4nG!!U0iG!!C!!C1cC1aC1aC1aG1cC1aA!!A1cG!!A1aC1aU1aG1aC1aU!!A!!G1aC1aC1LG5zA!!G!!U1aA1aG1aU1aG7aU1zU!!G1cG1aG1zU2aC&aG1aC1aG7aA1eA1aA1aG1aG!!C1cC!!U!!U!!G!!U1cG1aG1aU!!A1bC2[U!!G1aC1aC1aU1zG!!A!!U2aA1aG1aG1cG1aU!!G1aC1bU!!U!!G1aC1aG1aA1cG!!U1aG1aC3dC1aC1aC1aG1cG1aG1aA1aG1bG!!U!!C1cU1cC1cG1tU!!A" } }, "num_nts": 1859, "nts": [ { "index": 1, "index_chain": 1, "chain_name": "2", "nt_resnum": 1, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1", "linked_nts": [ null, "///2/2" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BII,non-stack,ss-non-loop,splayed-apart", "alpha": null, "beta": null, "gamma": -62.956, "delta": 146.802, "epsilon": -83.617, "zeta": -164.955, "epsilon_zeta": 81.338, "bb_type": "BII", "chi": 46.237, "glyco_bond": "syn", "C5prime_xyz": [ -5.487, 3.853, 0.473 ], "P_xyz": [ null, null, null ], "form": ".", "ssZp": -0.540, "Dp": 0.542, "splay_angle": 147.035, "splay_distance": 18.423, "splay_ratio": 0.959, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -21.500, "v1": 35.712, "v2": -35.492, "v3": 24.012, "v4": -1.783, "amplitude": 36.931, "phase_angle": 163.954, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 201.670, 163.390, 191.267 ], "x_axis": [ -0.147, 0.287, 0.947 ], "y_axis": [ -0.632, 0.709, -0.313 ], "z_axis": [ -0.761, -0.645, 0.078 ], "quaternion": [ 0.640, 0.129, -0.667, 0.359 ] } }, { "index": 2, "index_chain": 2, "chain_name": "2", "nt_resnum": 2, "nt_name": "A", "nt_code": "A", "nt_id": "///2/2", "linked_nts": [ "///2/1", "///2/3" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 74.044, "beta": 167.306, "gamma": 77.236, "delta": 147.313, "epsilon": -92.933, "zeta": -52.972, "epsilon_zeta": -39.961, "bb_type": "--", "chi": -124.251, "glyco_bond": "anti", "C5prime_xyz": [ -1.963, 8.598, -0.975 ], "P_xyz": [ 0.618, 9.064, -0.906 ], "form": ".", "ssZp": 0.688, "Dp": 0.717, "splay_angle": 124.858, "splay_distance": 17.817, "splay_ratio": 0.886, "d22": null, "d64": null, "eta": 7.410, "theta": -37.676, "eta_prime": 54.655, "theta_prime": -59.003, "eta_base": 107.323, "theta_base": -37.987, "v0": -22.101, "v1": 36.397, "v2": -36.049, "v3": 24.232, "v4": -1.536, "amplitude": 37.586, "phase_angle": 163.563, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.127, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 190.534, 169.052, 177.727 ], "x_axis": [ -0.018, -0.994, -0.110 ], "y_axis": [ 0.744, -0.087, 0.662 ], "z_axis": [ -0.668, -0.070, 0.741 ], "quaternion": [ 0.639, 0.286, -0.218, -0.679 ] } }, { "index": 3, "index_chain": 3, "chain_name": "2", "nt_resnum": 3, "nt_name": "C", "nt_code": "C", "nt_id": "///2/3", "linked_nts": [ "///2/2", "///2/4" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -65.914, "beta": -138.544, "gamma": 47.921, "delta": 143.421, "epsilon": -91.138, "zeta": -88.208, "epsilon_zeta": -2.930, "bb_type": "--", "chi": -126.684, "glyco_bond": "anti", "C5prime_xyz": [ -1.905, 8.700, -0.930 ], "P_xyz": [ -0.315, 10.006, 0.695 ], "form": ".", "ssZp": 0.724, "Dp": 0.774, "splay_angle": 76.199, "splay_distance": 12.929, "splay_ratio": 0.617, "d22": 9.465, "d64": 12.073, "eta": -166.251, "theta": -100.432, "eta_prime": -120.675, "theta_prime": -114.068, "eta_base": -118.401, "theta_base": -101.077, "v0": -23.128, "v1": 35.792, "v2": -34.103, "v3": 21.679, "v4": 0.695, "amplitude": 36.263, "phase_angle": 160.129, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.738, "filter_rmsd": 0.062, "frame": { "rmsd": 0.001, "origin": [ 200.130, 170.625, 192.657 ], "x_axis": [ 0.564, -0.648, -0.511 ], "y_axis": [ -0.429, 0.299, -0.852 ], "z_axis": [ 0.706, 0.700, -0.109 ], "quaternion": [ 0.662, -0.586, 0.459, -0.083 ] } }, { "index": 4, "index_chain": 4, "chain_name": "2", "nt_resnum": 4, "nt_name": "C", "nt_code": "C", "nt_id": "///2/4", "linked_nts": [ "///2/3", "///2/5" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -97.291, "beta": 72.708, "gamma": 176.162, "delta": 82.259, "epsilon": -163.667, "zeta": -85.761, "epsilon_zeta": -77.906, "bb_type": "BI", "chi": 178.613, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.395, 1.772 ], "P_xyz": [ -1.860, 10.579, 0.429 ], "form": "A", "ssZp": 4.416, "Dp": 4.503, "splay_angle": 23.691, "splay_distance": 3.556, "splay_ratio": 0.206, "d22": 4.887, "d64": 4.536, "eta": -135.948, "theta": 143.228, "eta_prime": -133.152, "theta_prime": 171.151, "eta_base": -103.617, "theta_base": -152.471, "v0": 3.225, "v1": -24.474, "v2": 35.245, "v3": -34.351, "v4": 19.627, "amplitude": 36.265, "phase_angle": 13.618, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 202.575, 183.182, 190.780 ], "x_axis": [ 0.126, 0.468, -0.875 ], "y_axis": [ -0.787, -0.490, -0.375 ], "z_axis": [ -0.604, 0.736, 0.306 ], "quaternion": [ 0.485, -0.572, 0.140, 0.646 ] } }, { "index": 5, "index_chain": 5, "chain_name": "2", "nt_resnum": 5, "nt_name": "U", "nt_code": "U", "nt_id": "///2/5", "linked_nts": [ "///2/4", "///2/6" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -160.053, "beta": -143.803, "gamma": 122.372, "delta": 82.184, "epsilon": -150.447, "zeta": -73.525, "epsilon_zeta": -76.922, "bb_type": "BI", "chi": -176.838, "glyco_bond": "anti", "C5prime_xyz": [ -1.359, 8.437, 1.523 ], "P_xyz": [ 1.215, 8.652, 1.079 ], "form": "A", "ssZp": 4.610, "Dp": 4.625, "splay_angle": 21.656, "splay_distance": 3.349, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 155.896, "theta": -142.085, "eta_prime": 172.796, "theta_prime": -147.479, "eta_base": -145.568, "theta_base": -133.264, "v0": 3.794, "v1": -25.221, "v2": 35.863, "v3": -34.647, "v4": 19.451, "amplitude": 36.778, "phase_angle": 12.803, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 202.106, 186.337, 192.351 ], "x_axis": [ -0.364, 0.084, -0.928 ], "y_axis": [ -0.726, -0.650, 0.226 ], "z_axis": [ -0.584, 0.756, 0.297 ], "quaternion": [ 0.266, -0.497, 0.323, 0.760 ] } }, { "index": 6, "index_chain": 6, "chain_name": "2", "nt_resnum": 6, "nt_name": "G", "nt_code": "G", "nt_id": "///2/6", "linked_nts": [ "///2/5", "///2/7" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -81.970, "beta": -167.590, "gamma": 52.841, "delta": 84.067, "epsilon": -149.616, "zeta": -73.044, "epsilon_zeta": -76.572, "bb_type": "BI", "chi": -164.216, "glyco_bond": "anti", "C5prime_xyz": [ -1.115, 8.649, 0.818 ], "P_xyz": [ 1.376, 8.819, 1.635 ], "form": "A", "ssZp": 4.488, "Dp": 4.611, "splay_angle": 27.843, "splay_distance": 4.324, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 164.915, "theta": -144.026, "eta_prime": 172.835, "theta_prime": -139.920, "eta_base": -156.832, "theta_base": -111.079, "v0": 4.479, "v1": -24.854, "v2": 34.654, "v3": -33.051, "v4": 18.046, "amplitude": 35.368, "phase_angle": 11.533, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.672, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 201.885, 189.666, 192.650 ], "x_axis": [ -0.559, -0.497, -0.664 ], "y_axis": [ -0.419, -0.521, 0.743 ], "z_axis": [ -0.715, 0.694, 0.083 ], "quaternion": [ -0.026, -0.469, 0.489, 0.735 ] } }, { "index": 7, "index_chain": 7, "chain_name": "2", "nt_resnum": 7, "nt_name": "G", "nt_code": "G", "nt_id": "///2/7", "linked_nts": [ "///2/6", "///2/8" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,A-minor", "alpha": -61.658, "beta": 170.902, "gamma": 56.058, "delta": 81.702, "epsilon": -118.185, "zeta": -113.771, "epsilon_zeta": -4.414, "bb_type": "--", "chi": -165.267, "glyco_bond": "anti", "C5prime_xyz": [ -1.239, 8.659, 0.841 ], "P_xyz": [ 1.371, 8.896, 0.979 ], "form": ".", "ssZp": 4.456, "Dp": 4.776, "splay_angle": 48.018, "splay_distance": 8.613, "splay_ratio": 0.420, "d22": null, "d64": null, "eta": 178.565, "theta": -140.825, "eta_prime": -169.113, "theta_prime": -143.721, "eta_base": -130.759, "theta_base": -161.603, "v0": 4.324, "v1": -25.972, "v2": 36.572, "v3": -35.102, "v4": 19.420, "amplitude": 37.410, "phase_angle": 12.147, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.966, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 198.894, 192.602, 191.589 ], "x_axis": [ -0.689, -0.714, -0.124 ], "y_axis": [ 0.019, -0.189, 0.982 ], "z_axis": [ -0.724, 0.674, 0.144 ], "quaternion": [ -0.257, -0.298, 0.582, 0.711 ] } }, { "index": 8, "index_chain": 8, "chain_name": "2", "nt_resnum": 8, "nt_name": "U", "nt_code": "U", "nt_id": "///2/8", "linked_nts": [ "///2/7", "///2/9" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,multiplet,hairpin-loop,splayed-apart", "alpha": 61.166, "beta": -157.356, "gamma": -62.761, "delta": 146.212, "epsilon": -122.875, "zeta": -68.489, "epsilon_zeta": -54.386, "bb_type": "--", "chi": -119.593, "glyco_bond": "anti", "C5prime_xyz": [ -2.085, 8.520, -1.235 ], "P_xyz": [ -2.058, 11.090, -1.780 ], "form": ".", "ssZp": 1.473, "Dp": 1.454, "splay_angle": 90.496, "splay_distance": 14.134, "splay_ratio": 0.710, "d22": 7.844, "d64": 9.391, "eta": -139.788, "theta": -75.866, "eta_prime": -141.247, "theta_prime": -78.510, "eta_base": -166.620, "theta_base": -48.056, "v0": -22.612, "v1": 36.478, "v2": -35.652, "v3": 23.508, "v4": -0.758, "amplitude": 37.404, "phase_angle": 162.392, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.770, "filter_rmsd": 0.102, "frame": { "rmsd": 0.003, "origin": [ 196.587, 200.653, 189.578 ], "x_axis": [ -0.485, -0.727, -0.486 ], "y_axis": [ -0.145, -0.481, 0.865 ], "z_axis": [ -0.862, 0.490, 0.128 ], "quaternion": [ -0.201, -0.466, 0.468, 0.723 ] } }, { "index": 9, "index_chain": 9, "chain_name": "2", "nt_resnum": 9, "nt_name": "U", "nt_code": "U", "nt_id": "///2/9", "linked_nts": [ "///2/8", "///2/10" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 151.431, "beta": -153.217, "gamma": 165.874, "delta": 81.360, "epsilon": -94.818, "zeta": -126.450, "epsilon_zeta": 31.632, "bb_type": "--", "chi": -157.466, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.748, 0.375 ], "P_xyz": [ 0.129, 9.819, -1.444 ], "form": ".", "ssZp": 3.850, "Dp": 4.669, "splay_angle": 67.990, "splay_distance": 10.197, "splay_ratio": 0.562, "d22": null, "d64": null, "eta": 147.879, "theta": -133.432, "eta_prime": -166.895, "theta_prime": -171.454, "eta_base": -134.327, "theta_base": 133.794, "v0": 1.499, "v1": -23.395, "v2": 35.142, "v3": -35.267, "v4": 21.306, "amplitude": 36.619, "phase_angle": 16.325, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 190.234, 194.730, 200.729 ], "x_axis": [ 0.713, -0.596, 0.370 ], "y_axis": [ 0.640, 0.768, 0.004 ], "z_axis": [ -0.287, 0.234, 0.929 ], "quaternion": [ 0.923, -0.062, -0.178, -0.335 ] } }, { "index": 10, "index_chain": 10, "chain_name": "2", "nt_resnum": 10, "nt_name": "G", "nt_code": "G", "nt_id": "///2/10", "linked_nts": [ "///2/9", "///2/11" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": 137.358, "beta": -146.604, "gamma": 66.679, "delta": 84.363, "epsilon": -116.128, "zeta": -55.825, "epsilon_zeta": -60.303, "bb_type": "--", "chi": -176.100, "glyco_bond": "anti", "C5prime_xyz": [ -1.136, 8.403, 1.490 ], "P_xyz": [ 1.249, 8.017, 2.520 ], "form": "A", "ssZp": 4.698, "Dp": 4.781, "splay_angle": 21.778, "splay_distance": 3.704, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 38.144, "theta": -110.993, "eta_prime": 63.139, "theta_prime": -119.561, "eta_base": 43.495, "theta_base": -103.112, "v0": 6.297, "v1": -26.626, "v2": 35.774, "v3": -33.132, "v4": 16.957, "amplitude": 36.206, "phase_angle": 8.862, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 184.572, 203.164, 201.618 ], "x_axis": [ 0.302, 0.495, -0.815 ], "y_axis": [ 0.852, 0.242, 0.464 ], "z_axis": [ 0.427, -0.834, -0.349 ], "quaternion": [ 0.547, 0.593, 0.568, -0.163 ] } }, { "index": 11, "index_chain": 11, "chain_name": "2", "nt_resnum": 11, "nt_name": "A", "nt_code": "A", "nt_id": "///2/11", "linked_nts": [ "///2/10", "///2/12" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,u-turn,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,bulge,A-minor", "alpha": -120.013, "beta": 119.816, "gamma": 129.202, "delta": 80.828, "epsilon": -136.178, "zeta": -60.484, "epsilon_zeta": -75.694, "bb_type": "BI", "chi": 169.756, "glyco_bond": "anti", "C5prime_xyz": [ -1.518, 8.036, 2.199 ], "P_xyz": [ -0.139, 9.889, 0.963 ], "form": ".", "ssZp": 4.703, "Dp": 4.756, "splay_angle": 28.265, "splay_distance": 4.731, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 153.403, "theta": -151.827, "eta_prime": 173.485, "theta_prime": -150.451, "eta_base": -144.365, "theta_base": -124.787, "v0": 5.945, "v1": -27.778, "v2": 37.909, "v3": -35.500, "v4": 18.636, "amplitude": 38.485, "phase_angle": 9.924, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 184.575, 200.882, 198.702 ], "x_axis": [ 0.561, 0.696, -0.448 ], "y_axis": [ 0.670, -0.064, 0.740 ], "z_axis": [ 0.486, -0.715, -0.502 ], "quaternion": [ 0.499, 0.729, 0.468, 0.013 ] } }, { "index": 12, "index_chain": 12, "chain_name": "2", "nt_resnum": 12, "nt_name": "U", "nt_code": "U", "nt_id": "///2/12", "linked_nts": [ "///2/11", "///2/13" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,u-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,bulge,phosphate", "alpha": -64.712, "beta": -165.162, "gamma": 46.282, "delta": 79.320, "epsilon": -172.091, "zeta": -84.775, "epsilon_zeta": -87.316, "bb_type": "BI", "chi": -159.316, "glyco_bond": "anti", "C5prime_xyz": [ -1.774, 8.832, 0.441 ], "P_xyz": [ 0.482, 9.784, 1.374 ], "form": "A", "ssZp": 4.277, "Dp": 4.364, "splay_angle": 22.452, "splay_distance": 3.614, "splay_ratio": 0.197, "d22": 4.251, "d64": 4.163, "eta": 169.422, "theta": -147.331, "eta_prime": -172.345, "theta_prime": -148.727, "eta_base": -130.601, "theta_base": -115.685, "v0": -2.674, "v1": -20.270, "v2": 34.154, "v3": -36.685, "v4": 24.798, "amplitude": 37.012, "phase_angle": 22.661, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.700, "filter_rmsd": 0.101, "frame": { "rmsd": 0.005, "origin": [ 185.570, 199.977, 194.165 ], "x_axis": [ 0.843, 0.525, 0.118 ], "y_axis": [ 0.176, -0.476, 0.862 ], "z_axis": [ 0.508, -0.706, -0.494 ], "quaternion": [ 0.467, 0.839, 0.209, 0.187 ] } }, { "index": 13, "index_chain": 13, "chain_name": "2", "nt_resnum": 13, "nt_name": "C", "nt_code": "C", "nt_id": "///2/13", "linked_nts": [ "///2/12", "///2/14" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor", "alpha": 176.536, "beta": -148.103, "gamma": 148.149, "delta": 81.256, "epsilon": -144.378, "zeta": -69.271, "epsilon_zeta": -75.108, "bb_type": "BI", "chi": -177.755, "glyco_bond": "anti", "C5prime_xyz": [ -1.398, 8.546, 1.561 ], "P_xyz": [ 0.958, 9.376, 0.787 ], "form": ".", "ssZp": 4.538, "Dp": 4.583, "splay_angle": 21.864, "splay_distance": 3.956, "splay_ratio": 0.207, "d22": 4.363, "d64": 4.666, "eta": 158.685, "theta": -117.706, "eta_prime": 174.656, "theta_prime": -134.924, "eta_base": -138.130, "theta_base": -113.252, "v0": 0.897, "v1": -22.546, "v2": 34.427, "v3": -34.867, "v4": 21.397, "amplitude": 36.041, "phase_angle": 17.211, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 187.833, 198.870, 191.574 ], "x_axis": [ 0.688, 0.262, 0.677 ], "y_axis": [ -0.322, -0.726, 0.608 ], "z_axis": [ 0.650, -0.636, -0.415 ], "quaternion": [ 0.370, 0.841, -0.018, 0.395 ] } }, { "index": 14, "index_chain": 14, "chain_name": "2", "nt_resnum": 14, "nt_name": "C", "nt_code": "C", "nt_id": "///2/14", "linked_nts": [ "///2/13", "///2/15" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor,phosphate", "alpha": 161.699, "beta": -174.436, "gamma": 170.146, "delta": 83.541, "epsilon": -145.481, "zeta": -81.943, "epsilon_zeta": -63.538, "bb_type": "BI", "chi": -175.504, "glyco_bond": "anti", "C5prime_xyz": [ -1.359, 8.569, 1.448 ], "P_xyz": [ 0.350, 10.340, 0.558 ], "form": "A", "ssZp": 4.483, "Dp": 4.543, "splay_angle": 24.146, "splay_distance": 3.761, "splay_ratio": 0.209, "d22": 4.874, "d64": 4.623, "eta": 153.792, "theta": -177.530, "eta_prime": 174.096, "theta_prime": -171.481, "eta_base": -139.343, "theta_base": -149.708, "v0": 0.975, "v1": -21.867, "v2": 33.208, "v3": -33.615, "v4": 20.601, "amplitude": 34.737, "phase_angle": 17.065, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.681, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 191.586, 199.085, 190.343 ], "x_axis": [ 0.242, -0.109, 0.964 ], "y_axis": [ -0.578, -0.814, 0.053 ], "z_axis": [ 0.779, -0.570, -0.260 ], "quaternion": [ 0.205, 0.761, -0.226, 0.573 ] } }, { "index": 15, "index_chain": 15, "chain_name": "2", "nt_resnum": 15, "nt_name": "U", "nt_code": "U", "nt_id": "///2/15", "linked_nts": [ "///2/14", "///2/16" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,cap-donor", "alpha": -67.632, "beta": 176.084, "gamma": 51.336, "delta": 83.367, "epsilon": -135.449, "zeta": -61.035, "epsilon_zeta": -74.413, "bb_type": "BI", "chi": -165.044, "glyco_bond": "anti", "C5prime_xyz": [ -1.292, 8.634, 0.845 ], "P_xyz": [ 1.260, 8.881, 1.400 ], "form": ".", "ssZp": 4.465, "Dp": 4.667, "splay_angle": 33.171, "splay_distance": 5.165, "splay_ratio": 0.285, "d22": null, "d64": null, "eta": 169.672, "theta": -120.874, "eta_prime": 177.780, "theta_prime": -114.969, "eta_base": -155.836, "theta_base": -63.801, "v0": 3.413, "v1": -24.497, "v2": 35.111, "v3": -34.096, "v4": 19.370, "amplitude": 36.079, "phase_angle": 13.306, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.897, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 194.969, 198.775, 188.728 ], "x_axis": [ -0.137, -0.441, 0.887 ], "y_axis": [ -0.626, -0.655, -0.422 ], "z_axis": [ 0.768, -0.613, -0.186 ], "quaternion": [ 0.073, 0.653, -0.409, 0.634 ] } }, { "index": 16, "index_chain": 16, "chain_name": "2", "nt_resnum": 16, "nt_name": "G", "nt_code": "G", "nt_id": "///2/16", "linked_nts": [ "///2/15", "///2/17" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -62.234, "beta": 161.356, "gamma": 60.208, "delta": 82.466, "epsilon": -117.203, "zeta": -115.251, "epsilon_zeta": -1.952, "bb_type": "--", "chi": -160.146, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.748, 0.551 ], "P_xyz": [ 1.289, 8.985, 0.330 ], "form": ".", "ssZp": 4.237, "Dp": 4.718, "splay_angle": 22.071, "splay_distance": 3.522, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 170.675, "theta": -159.125, "eta_prime": -162.595, "theta_prime": -156.123, "eta_base": -91.840, "theta_base": -142.265, "v0": 3.037, "v1": -24.331, "v2": 35.211, "v3": -34.421, "v4": 19.821, "amplitude": 36.277, "phase_angle": 13.928, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.788, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 195.933, 194.222, 190.968 ], "x_axis": [ -0.609, -0.786, 0.111 ], "y_axis": [ -0.125, -0.043, -0.991 ], "z_axis": [ 0.784, -0.617, -0.072 ], "quaternion": [ 0.263, -0.356, 0.640, -0.628 ] } }, { "index": 17, "index_chain": 17, "chain_name": "2", "nt_resnum": 17, "nt_name": "C", "nt_code": "C", "nt_id": "///2/17", "linked_nts": [ "///2/16", "///2/18" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,A-minor", "alpha": -54.083, "beta": 127.606, "gamma": 65.629, "delta": 81.112, "epsilon": -155.605, "zeta": -79.056, "epsilon_zeta": -76.550, "bb_type": "BI", "chi": -155.989, "glyco_bond": "anti", "C5prime_xyz": [ -1.383, 8.822, 0.275 ], "P_xyz": [ 0.989, 8.670, -0.822 ], "form": "A", "ssZp": 4.297, "Dp": 4.555, "splay_angle": 23.665, "splay_distance": 3.739, "splay_ratio": 0.205, "d22": 4.540, "d64": 4.525, "eta": 161.230, "theta": -146.324, "eta_prime": 177.278, "theta_prime": -156.749, "eta_base": -156.829, "theta_base": -141.559, "v0": 1.133, "v1": -23.323, "v2": 35.374, "v3": -35.691, "v4": 21.793, "amplitude": 36.966, "phase_angle": 16.876, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.596, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 199.020, 192.541, 191.187 ], "x_axis": [ -0.637, -0.735, -0.233 ], "y_axis": [ 0.233, 0.105, -0.967 ], "z_axis": [ 0.735, -0.670, 0.105 ], "quaternion": [ 0.378, -0.196, 0.640, -0.640 ] } }, { "index": 18, "index_chain": 18, "chain_name": "2", "nt_resnum": 18, "nt_name": "C", "nt_code": "C", "nt_id": "///2/18", "linked_nts": [ "///2/17", "///2/19" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -59.142, "beta": 166.747, "gamma": 55.147, "delta": 80.498, "epsilon": -140.573, "zeta": -68.881, "epsilon_zeta": -71.692, "bb_type": "BI", "chi": -158.598, "glyco_bond": "anti", "C5prime_xyz": [ -1.226, 8.771, 0.444 ], "P_xyz": [ 1.379, 9.051, 0.352 ], "form": "A", "ssZp": 4.373, "Dp": 4.691, "splay_angle": 26.263, "splay_distance": 4.237, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 172.699, "theta": -134.299, "eta_prime": -177.329, "theta_prime": -134.160, "eta_base": -144.732, "theta_base": -105.605, "v0": 2.667, "v1": -24.841, "v2": 36.389, "v3": -35.829, "v4": 20.926, "amplitude": 37.609, "phase_angle": 14.636, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.904, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 201.249, 189.912, 192.638 ], "x_axis": [ -0.474, -0.578, -0.664 ], "y_axis": [ 0.540, 0.405, -0.738 ], "z_axis": [ 0.695, -0.708, 0.120 ], "quaternion": [ 0.513, -0.014, 0.663, -0.545 ] } }, { "index": 19, "index_chain": 19, "chain_name": "2", "nt_resnum": 19, "nt_name": "A", "nt_code": "A", "nt_id": "///2/19", "linked_nts": [ "///2/18", "///2/20" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.149, "beta": 174.004, "gamma": 47.415, "delta": 78.037, "epsilon": -171.845, "zeta": -88.627, "epsilon_zeta": -83.217, "bb_type": "BI", "chi": -166.187, "glyco_bond": "anti", "C5prime_xyz": [ -1.610, 8.707, 0.854 ], "P_xyz": [ 0.875, 9.365, 1.347 ], "form": "A", "ssZp": 4.475, "Dp": 4.479, "splay_angle": 26.305, "splay_distance": 4.147, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 160.429, "theta": -143.465, "eta_prime": 179.493, "theta_prime": -145.297, "eta_base": -131.256, "theta_base": -116.726, "v0": 0.471, "v1": -23.835, "v2": 36.874, "v3": -37.636, "v4": 23.427, "amplitude": 38.760, "phase_angle": 17.947, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.898, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 202.295, 185.835, 192.159 ], "x_axis": [ -0.310, 0.060, -0.949 ], "y_axis": [ 0.709, 0.680, -0.188 ], "z_axis": [ 0.634, -0.731, -0.253 ], "quaternion": [ 0.529, 0.257, 0.749, -0.307 ] } }, { "index": 20, "index_chain": 20, "chain_name": "2", "nt_resnum": 20, "nt_name": "G", "nt_code": "G", "nt_id": "///2/20", "linked_nts": [ "///2/19", "///2/21" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,cap-donor", "alpha": 168.261, "beta": -137.192, "gamma": 158.854, "delta": 82.465, "epsilon": -116.405, "zeta": -71.664, "epsilon_zeta": -44.742, "bb_type": "--", "chi": 172.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.579, 8.230, 2.068 ], "P_xyz": [ 0.692, 9.244, 1.249 ], "form": ".", "ssZp": 4.705, "Dp": 4.720, "splay_angle": 34.919, "splay_distance": 5.421, "splay_ratio": 0.302, "d22": null, "d64": null, "eta": 172.638, "theta": -126.213, "eta_prime": -173.248, "theta_prime": -126.396, "eta_base": -129.149, "theta_base": -87.218, "v0": 3.076, "v1": -24.304, "v2": 35.139, "v3": -34.356, "v4": 19.734, "amplitude": 36.195, "phase_angle": 13.873, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.210, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 202.978, 182.125, 190.436 ], "x_axis": [ 0.133, 0.425, -0.895 ], "y_axis": [ 0.737, 0.561, 0.377 ], "z_axis": [ 0.663, -0.710, -0.239 ], "quaternion": [ 0.603, 0.450, 0.645, -0.129 ] } }, { "index": 21, "index_chain": 21, "chain_name": "2", "nt_resnum": 21, "nt_name": "U", "nt_code": "U", "nt_id": "///2/21", "linked_nts": [ "///2/20", "///2/22" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -56.654, "beta": 173.893, "gamma": 47.608, "delta": 80.788, "epsilon": -127.448, "zeta": -91.933, "epsilon_zeta": -35.515, "bb_type": "--", "chi": -159.134, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.719, 0.479 ], "P_xyz": [ 1.186, 9.171, 0.790 ], "form": ".", "ssZp": 4.307, "Dp": 4.731, "splay_angle": 30.470, "splay_distance": 4.848, "splay_ratio": 0.263, "d22": null, "d64": null, "eta": 166.030, "theta": -146.759, "eta_prime": -172.067, "theta_prime": -140.845, "eta_base": -112.738, "theta_base": -118.565, "v0": 2.656, "v1": -24.726, "v2": 36.200, "v3": -35.661, "v4": 20.808, "amplitude": 37.413, "phase_angle": 14.631, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.447, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 206.412, 180.500, 186.570 ], "x_axis": [ 0.652, 0.739, -0.170 ], "y_axis": [ 0.268, -0.016, 0.963 ], "z_axis": [ 0.709, -0.674, -0.208 ], "quaternion": [ 0.598, 0.685, 0.368, 0.197 ] } }, { "index": 22, "index_chain": 22, "chain_name": "2", "nt_resnum": 22, "nt_name": "A", "nt_code": "A", "nt_id": "///2/22", "linked_nts": [ "///2/21", "///2/23" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -57.334, "beta": 165.472, "gamma": 52.347, "delta": 80.740, "epsilon": -146.307, "zeta": -47.836, "epsilon_zeta": -98.471, "bb_type": "BI", "chi": -159.314, "glyco_bond": "anti", "C5prime_xyz": [ -1.479, 8.746, 0.480 ], "P_xyz": [ 1.099, 9.201, 0.534 ], "form": ".", "ssZp": 4.382, "Dp": 4.625, "splay_angle": 25.110, "splay_distance": 4.567, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 168.848, "theta": -134.049, "eta_prime": 179.249, "theta_prime": -146.822, "eta_base": -150.990, "theta_base": -154.430, "v0": 1.303, "v1": -23.529, "v2": 35.558, "v3": -35.802, "v4": 21.757, "amplitude": 37.114, "phase_angle": 16.649, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.561, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 210.256, 178.286, 184.613 ], "x_axis": [ 0.349, 0.853, 0.388 ], "y_axis": [ -0.131, -0.366, 0.921 ], "z_axis": [ 0.928, -0.373, -0.016 ], "quaternion": [ 0.492, 0.658, 0.274, 0.500 ] } }, { "index": 23, "index_chain": 23, "chain_name": "2", "nt_resnum": 23, "nt_name": "G", "nt_code": "G", "nt_id": "///2/23", "linked_nts": [ "///2/22", "///2/24" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -128.682, "beta": 118.868, "gamma": 151.524, "delta": 82.748, "epsilon": -123.013, "zeta": -65.985, "epsilon_zeta": -57.029, "bb_type": "--", "chi": 176.961, "glyco_bond": "anti", "C5prime_xyz": [ -1.685, 8.431, 1.820 ], "P_xyz": [ -0.897, 10.600, 0.573 ], "form": ".", "ssZp": 4.575, "Dp": 4.623, "splay_angle": 34.440, "splay_distance": 5.307, "splay_ratio": 0.296, "d22": null, "d64": null, "eta": -177.881, "theta": -160.500, "eta_prime": -176.107, "theta_prime": -146.064, "eta_base": -169.845, "theta_base": -81.356, "v0": 0.234, "v1": -21.567, "v2": 33.424, "v3": -34.250, "v4": 21.469, "amplitude": 35.194, "phase_angle": 18.249, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.107, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 213.362, 177.442, 181.374 ], "x_axis": [ 0.220, 0.845, 0.488 ], "y_axis": [ -0.128, -0.471, 0.873 ], "z_axis": [ 0.967, -0.254, 0.004 ], "quaternion": [ 0.434, 0.649, 0.276, 0.560 ] } }, { "index": 24, "index_chain": 24, "chain_name": "2", "nt_resnum": 24, "nt_name": "C", "nt_code": "C", "nt_id": "///2/24", "linked_nts": [ "///2/23", "///2/25" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -58.283, "beta": 159.573, "gamma": 53.197, "delta": 82.605, "epsilon": -128.714, "zeta": -87.790, "epsilon_zeta": -40.924, "bb_type": "--", "chi": -159.979, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.745, 0.542 ], "P_xyz": [ 1.361, 8.913, 0.485 ], "form": ".", "ssZp": 4.326, "Dp": 4.696, "splay_angle": 19.466, "splay_distance": 3.158, "splay_ratio": 0.169, "d22": null, "d64": null, "eta": 160.719, "theta": -140.649, "eta_prime": -170.202, "theta_prime": -132.479, "eta_base": -89.326, "theta_base": -136.000, "v0": 2.488, "v1": -23.772, "v2": 34.841, "v3": -34.387, "v4": 20.131, "amplitude": 36.030, "phase_angle": 14.763, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.601, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 217.292, 178.794, 184.674 ], "x_axis": [ 0.059, -0.109, 0.992 ], "y_axis": [ -0.198, -0.976, -0.096 ], "z_axis": [ 0.978, -0.191, -0.080 ], "quaternion": [ 0.033, 0.727, -0.106, 0.678 ] } }, { "index": 25, "index_chain": 25, "chain_name": "2", "nt_resnum": 25, "nt_name": "A", "nt_code": "A", "nt_id": "///2/25", "linked_nts": [ "///2/24", "///2/26" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.578, "beta": 175.273, "gamma": 55.821, "delta": 147.301, "epsilon": -159.568, "zeta": -121.337, "epsilon_zeta": -38.231, "bb_type": "BI", "chi": -119.864, "glyco_bond": "anti", "C5prime_xyz": [ -2.016, 8.520, -1.199 ], "P_xyz": [ 0.389, 9.386, -0.602 ], "form": ".", "ssZp": 1.889, "Dp": 1.955, "splay_angle": 20.710, "splay_distance": 3.658, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 164.216, "theta": -108.943, "eta_prime": -163.217, "theta_prime": -152.583, "eta_base": -158.659, "theta_base": -136.582, "v0": -21.656, "v1": 36.255, "v2": -36.220, "v3": 24.661, "v4": -2.113, "amplitude": 37.606, "phase_angle": 164.394, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.708, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 220.387, 179.406, 184.548 ], "x_axis": [ -0.657, -0.286, 0.698 ], "y_axis": [ 0.017, -0.931, -0.366 ], "z_axis": [ 0.754, -0.229, 0.616 ], "quaternion": [ -0.085, 0.405, -0.166, 0.895 ] } }, { "index": 26, "index_chain": 26, "chain_name": "2", "nt_resnum": 26, "nt_name": "U", "nt_code": "U", "nt_id": "///2/26", "linked_nts": [ "///2/25", "///2/27" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 129.910, "beta": -175.491, "gamma": 167.539, "delta": 81.526, "epsilon": -143.853, "zeta": -78.402, "epsilon_zeta": -65.451, "bb_type": "BI", "chi": -151.975, "glyco_bond": "anti", "C5prime_xyz": [ -1.368, 8.782, 0.051 ], "P_xyz": [ -0.168, 10.164, -1.828 ], "form": "A", "ssZp": 4.131, "Dp": 4.615, "splay_angle": 24.847, "splay_distance": 3.957, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 127.004, "theta": -171.934, "eta_prime": 137.879, "theta_prime": -166.667, "eta_base": 174.042, "theta_base": -130.576, "v0": 1.204, "v1": -22.933, "v2": 34.719, "v3": -34.983, "v4": 21.310, "amplitude": 36.257, "phase_angle": 16.748, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 223.252, 180.557, 186.510 ], "x_axis": [ -0.598, -0.677, 0.429 ], "y_axis": [ 0.362, -0.706, -0.609 ], "z_axis": [ 0.715, -0.208, 0.667 ], "quaternion": [ -0.301, 0.332, -0.237, 0.862 ] } }, { "index": 27, "index_chain": 27, "chain_name": "2", "nt_resnum": 27, "nt_name": "A", "nt_code": "A", "nt_id": "///2/27", "linked_nts": [ "///2/26", "///2/28" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -57.420, "beta": 162.363, "gamma": 53.596, "delta": 81.996, "epsilon": -153.302, "zeta": -73.691, "epsilon_zeta": -79.611, "bb_type": "BI", "chi": -159.168, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.714, 0.496 ], "P_xyz": [ 1.238, 9.010, 0.478 ], "form": "A", "ssZp": 4.377, "Dp": 4.575, "splay_angle": 20.885, "splay_distance": 3.315, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 166.106, "theta": -145.769, "eta_prime": -176.925, "theta_prime": -147.442, "eta_base": -129.494, "theta_base": -123.168, "v0": 2.411, "v1": -24.016, "v2": 35.270, "v3": -34.850, "v4": 20.486, "amplitude": 36.499, "phase_angle": 14.913, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.885, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 224.791, 178.829, 189.720 ], "x_axis": [ -0.434, -0.883, -0.177 ], "y_axis": [ 0.672, -0.186, -0.717 ], "z_axis": [ 0.600, -0.430, 0.674 ], "quaternion": [ 0.513, -0.140, 0.379, -0.757 ] } }, { "index": 28, "index_chain": 28, "chain_name": "2", "nt_resnum": 28, "nt_name": "U", "nt_code": "U", "nt_id": "///2/28", "linked_nts": [ "///2/27", "///2/29" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.369, "beta": 166.225, "gamma": 54.685, "delta": 79.592, "epsilon": -149.325, "zeta": -81.996, "epsilon_zeta": -67.329, "bb_type": "BI", "chi": -157.348, "glyco_bond": "anti", "C5prime_xyz": [ -1.439, 8.754, 0.358 ], "P_xyz": [ 1.142, 9.188, 0.210 ], "form": "A", "ssZp": 4.364, "Dp": 4.643, "splay_angle": 27.219, "splay_distance": 4.279, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 167.977, "theta": -152.899, "eta_prime": -177.516, "theta_prime": -153.231, "eta_base": -136.520, "theta_base": -133.221, "v0": 2.271, "v1": -24.847, "v2": 36.776, "v3": -36.453, "v4": 21.545, "amplitude": 38.120, "phase_angle": 15.261, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.947, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 225.510, 177.122, 192.469 ], "x_axis": [ -0.015, -0.866, -0.499 ], "y_axis": [ 0.866, 0.238, -0.439 ], "z_axis": [ 0.499, -0.439, 0.747 ], "quaternion": [ 0.702, 0.000, 0.356, -0.617 ] } }, { "index": 29, "index_chain": 29, "chain_name": "2", "nt_resnum": 29, "nt_name": "G", "nt_code": "G", "nt_id": "///2/29", "linked_nts": [ "///2/28", "///2/30" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -52.183, "beta": 169.959, "gamma": 44.094, "delta": 79.752, "epsilon": -136.178, "zeta": -84.963, "epsilon_zeta": -51.216, "bb_type": "BI", "chi": -170.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.614, 1.164 ], "P_xyz": [ 1.071, 8.974, 1.803 ], "form": "A", "ssZp": 4.648, "Dp": 4.725, "splay_angle": 22.587, "splay_distance": 3.583, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 171.593, "theta": -147.735, "eta_prime": 178.756, "theta_prime": -144.722, "eta_base": -150.437, "theta_base": -120.158, "v0": 3.062, "v1": -25.427, "v2": 36.920, "v3": -36.200, "v4": 20.871, "amplitude": 38.070, "phase_angle": 14.119, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.719, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 226.357, 174.629, 195.842 ], "x_axis": [ 0.193, -0.476, -0.858 ], "y_axis": [ 0.701, 0.679, -0.219 ], "z_axis": [ 0.686, -0.559, 0.465 ], "quaternion": [ 0.764, 0.111, 0.505, -0.385 ] } }, { "index": 30, "index_chain": 30, "chain_name": "2", "nt_resnum": 30, "nt_name": "C", "nt_code": "C", "nt_id": "///2/30", "linked_nts": [ "///2/29", "///2/31" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -56.361, "beta": 160.663, "gamma": 53.039, "delta": 77.561, "epsilon": -142.892, "zeta": -63.739, "epsilon_zeta": -79.152, "bb_type": "BI", "chi": -168.625, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.728, 1.005 ], "P_xyz": [ 1.075, 9.200, 1.078 ], "form": "A", "ssZp": 4.631, "Dp": 4.704, "splay_angle": 24.842, "splay_distance": 3.973, "splay_ratio": 0.219, "d22": 3.707, "d64": 3.905, "eta": 165.435, "theta": -133.470, "eta_prime": 177.468, "theta_prime": -132.303, "eta_base": -144.633, "theta_base": -91.122, "v0": 1.456, "v1": -25.172, "v2": 38.027, "v3": -38.207, "v4": 23.158, "amplitude": 39.667, "phase_angle": 16.531, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.749, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 227.442, 171.427, 197.028 ], "x_axis": [ 0.444, 0.014, -0.896 ], "y_axis": [ 0.547, 0.787, 0.284 ], "z_axis": [ 0.709, -0.617, 0.342 ], "quaternion": [ 0.802, 0.281, 0.500, -0.166 ] } }, { "index": 31, "index_chain": 31, "chain_name": "2", "nt_resnum": 31, "nt_name": "U", "nt_code": "U", "nt_id": "///2/31", "linked_nts": [ "///2/30", "///2/32" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -65.400, "beta": 171.743, "gamma": 57.433, "delta": 78.624, "epsilon": -141.707, "zeta": -81.931, "epsilon_zeta": -59.777, "bb_type": "BI", "chi": -163.156, "glyco_bond": "anti", "C5prime_xyz": [ -1.538, 8.760, 0.688 ], "P_xyz": [ 1.009, 9.368, 0.781 ], "form": "A", "ssZp": 4.497, "Dp": 4.677, "splay_angle": 23.059, "splay_distance": 3.651, "splay_ratio": 0.201, "d22": 4.355, "d64": 4.327, "eta": 167.050, "theta": -149.668, "eta_prime": -173.792, "theta_prime": -147.071, "eta_base": -112.967, "theta_base": -119.061, "v0": 0.475, "v1": -23.637, "v2": 36.522, "v3": -37.260, "v4": 23.190, "amplitude": 38.383, "phase_angle": 17.915, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 230.303, 169.268, 195.314 ], "x_axis": [ 0.644, 0.605, -0.468 ], "y_axis": [ 0.176, 0.479, 0.860 ], "z_axis": [ 0.745, -0.636, 0.202 ], "quaternion": [ 0.762, 0.491, 0.398, 0.141 ] } }, { "index": 32, "index_chain": 32, "chain_name": "2", "nt_resnum": 32, "nt_name": "U", "nt_code": "U", "nt_id": "///2/32", "linked_nts": [ "///2/31", "///2/33" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -57.524, "beta": 162.096, "gamma": 56.965, "delta": 80.429, "epsilon": -142.058, "zeta": -149.116, "epsilon_zeta": 7.058, "bb_type": "--", "chi": -158.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.487, 8.763, 0.421 ], "P_xyz": [ 1.084, 9.207, 0.196 ], "form": ".", "ssZp": 4.361, "Dp": 4.660, "splay_angle": 86.338, "splay_distance": 13.341, "splay_ratio": 0.686, "d22": null, "d64": null, "eta": 170.650, "theta": 165.436, "eta_prime": -176.183, "theta_prime": 138.886, "eta_base": -136.436, "theta_base": 116.803, "v0": 1.201, "v1": -23.679, "v2": 35.900, "v3": -36.191, "v4": 22.058, "amplitude": 37.502, "phase_angle": 16.805, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.835, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 233.277, 167.331, 194.454 ], "x_axis": [ 0.574, 0.817, 0.053 ], "y_axis": [ -0.100, 0.006, 0.995 ], "z_axis": [ 0.813, -0.576, 0.086 ], "quaternion": [ 0.645, 0.609, 0.295, 0.356 ] } }, { "index": 33, "index_chain": 33, "chain_name": "2", "nt_resnum": 33, "nt_name": "G", "nt_code": "G", "nt_id": "///2/33", "linked_nts": [ "///2/32", "///2/34" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,splayed-apart", "alpha": 69.355, "beta": -162.574, "gamma": -175.319, "delta": 80.738, "epsilon": -144.183, "zeta": -74.064, "epsilon_zeta": -70.119, "bb_type": "BI", "chi": 176.042, "glyco_bond": "anti", "C5prime_xyz": [ -1.396, 8.277, 1.878 ], "P_xyz": [ 0.046, 10.336, 1.139 ], "form": ".", "ssZp": 4.724, "Dp": 4.723, "splay_angle": 30.687, "splay_distance": 4.869, "splay_ratio": 0.275, "d22": null, "d64": null, "eta": 104.168, "theta": -173.476, "eta_prime": 94.766, "theta_prime": -166.273, "eta_base": 86.196, "theta_base": -146.663, "v0": 5.670, "v1": -27.681, "v2": 38.025, "v3": -35.756, "v4": 18.956, "amplitude": 38.654, "phase_angle": 10.344, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 226.436, 156.870, 199.121 ], "x_axis": [ -0.493, 0.830, -0.260 ], "y_axis": [ 0.734, 0.558, 0.388 ], "z_axis": [ 0.467, 0.000, -0.884 ], "quaternion": [ 0.212, 0.456, 0.857, 0.113 ] } }, { "index": 34, "index_chain": 34, "chain_name": "2", "nt_resnum": 34, "nt_name": "U", "nt_code": "U", "nt_id": "///2/34", "linked_nts": [ "///2/33", "///2/35" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop", "alpha": -58.893, "beta": -172.245, "gamma": 52.525, "delta": 79.988, "epsilon": -143.040, "zeta": -73.274, "epsilon_zeta": -69.766, "bb_type": "BI", "chi": -163.291, "glyco_bond": "anti", "C5prime_xyz": [ -1.522, 8.762, 0.705 ], "P_xyz": [ 0.920, 9.388, 1.422 ], "form": ".", "ssZp": 4.451, "Dp": 4.626, "splay_angle": 26.080, "splay_distance": 4.073, "splay_ratio": 0.226, "d22": 3.936, "d64": 3.879, "eta": -177.242, "theta": -142.997, "eta_prime": -169.135, "theta_prime": -137.790, "eta_base": -147.590, "theta_base": -91.841, "v0": 0.124, "v1": -22.691, "v2": 35.330, "v3": -36.238, "v4": 22.771, "amplitude": 37.236, "phase_angle": 18.411, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.890, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 225.849, 155.176, 194.594 ], "x_axis": [ -0.106, 0.993, -0.049 ], "y_axis": [ 0.857, 0.116, 0.503 ], "z_axis": [ 0.505, 0.011, -0.863 ], "quaternion": [ 0.192, 0.640, 0.722, 0.178 ] } }, { "index": 35, "index_chain": 35, "chain_name": "2", "nt_resnum": 35, "nt_name": "C", "nt_code": "C", "nt_id": "///2/35", "linked_nts": [ "///2/34", "///2/36" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.806, "beta": 163.616, "gamma": 54.668, "delta": 80.819, "epsilon": -160.191, "zeta": -81.571, "epsilon_zeta": -78.620, "bb_type": "BI", "chi": -163.657, "glyco_bond": "anti", "C5prime_xyz": [ -1.249, 8.703, 0.753 ], "P_xyz": [ 1.364, 8.925, 0.743 ], "form": ".", "ssZp": 4.500, "Dp": 4.577, "splay_angle": 29.267, "splay_distance": 4.555, "splay_ratio": 0.254, "d22": 5.068, "d64": 5.261, "eta": 162.935, "theta": -160.284, "eta_prime": -176.178, "theta_prime": -161.361, "eta_base": -112.973, "theta_base": -157.517, "v0": 3.784, "v1": -25.768, "v2": 36.794, "v3": -35.605, "v4": 20.063, "amplitude": 37.759, "phase_angle": 12.987, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.928, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 227.253, 157.434, 191.509 ], "x_axis": [ 0.494, 0.780, 0.384 ], "y_axis": [ 0.704, -0.618, 0.350 ], "z_axis": [ 0.510, 0.097, -0.854 ], "quaternion": [ 0.073, 0.861, 0.431, 0.260 ] } }, { "index": 36, "index_chain": 36, "chain_name": "2", "nt_resnum": 36, "nt_name": "U", "nt_code": "U", "nt_id": "///2/36", "linked_nts": [ "///2/35", "///2/37" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,phosphate", "alpha": -59.378, "beta": -177.487, "gamma": 48.196, "delta": 82.740, "epsilon": -157.714, "zeta": -72.530, "epsilon_zeta": -85.184, "bb_type": "BI", "chi": -164.129, "glyco_bond": "anti", "C5prime_xyz": [ -1.340, 8.661, 0.800 ], "P_xyz": [ 1.142, 9.015, 1.569 ], "form": ".", "ssZp": 4.434, "Dp": 4.531, "splay_angle": 22.203, "splay_distance": 3.982, "splay_ratio": 0.208, "d22": 4.459, "d64": 5.050, "eta": 176.147, "theta": -122.852, "eta_prime": 179.860, "theta_prime": -133.132, "eta_base": -168.892, "theta_base": -116.505, "v0": 2.672, "v1": -23.738, "v2": 34.619, "v3": -34.051, "v4": 19.810, "amplitude": 35.750, "phase_angle": 14.447, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.815, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 226.647, 157.863, 187.014 ], "x_axis": [ 0.544, 0.533, 0.648 ], "y_axis": [ 0.506, -0.825, 0.253 ], "z_axis": [ 0.670, 0.190, -0.718 ], "quaternion": [ 0.018, 0.878, 0.295, 0.375 ] } }, { "index": 37, "index_chain": 37, "chain_name": "2", "nt_resnum": 37, "nt_name": "C", "nt_code": "C", "nt_id": "///2/37", "linked_nts": [ "///2/36", "///2/38" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 155.386, "beta": -168.200, "gamma": 174.857, "delta": 80.709, "epsilon": -127.570, "zeta": -62.615, "epsilon_zeta": -64.955, "bb_type": "BI", "chi": -176.390, "glyco_bond": "anti", "C5prime_xyz": [ -1.284, 8.499, 1.487 ], "P_xyz": [ 0.277, 10.335, 0.463 ], "form": ".", "ssZp": 4.714, "Dp": 4.753, "splay_angle": 33.805, "splay_distance": 5.147, "splay_ratio": 0.291, "d22": null, "d64": null, "eta": 158.887, "theta": -146.268, "eta_prime": 173.549, "theta_prime": -138.691, "eta_base": -150.024, "theta_base": -83.013, "v0": 3.986, "v1": -26.109, "v2": 37.165, "v3": -35.863, "v4": 20.085, "amplitude": 38.103, "phase_angle": 12.736, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.930, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 228.090, 160.980, 185.000 ], "x_axis": [ 0.644, 0.060, 0.763 ], "y_axis": [ 0.261, -0.955, -0.145 ], "z_axis": [ 0.719, 0.292, -0.630 ], "quaternion": [ -0.121, 0.898, 0.089, 0.412 ] } }, { "index": 38, "index_chain": 38, "chain_name": "2", "nt_resnum": 38, "nt_name": "A", "nt_code": "A", "nt_id": "///2/38", "linked_nts": [ "///2/37", "///2/39" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -63.545, "beta": 163.527, "gamma": 56.898, "delta": 81.327, "epsilon": -165.464, "zeta": -109.017, "epsilon_zeta": -56.448, "bb_type": "BI", "chi": -174.378, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.484, 1.355 ], "P_xyz": [ 1.183, 8.756, 1.571 ], "form": ".", "ssZp": 4.547, "Dp": 4.545, "splay_angle": 58.798, "splay_distance": 8.769, "splay_ratio": 0.494, "d22": null, "d64": null, "eta": 154.700, "theta": 166.492, "eta_prime": -173.241, "theta_prime": 168.740, "eta_base": -91.627, "theta_base": 169.799, "v0": 3.967, "v1": -25.749, "v2": 36.503, "v3": -35.220, "v4": 19.719, "amplitude": 37.412, "phase_angle": 12.654, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.715, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 233.183, 161.097, 185.740 ], "x_axis": [ 0.483, -0.817, 0.315 ], "y_axis": [ -0.423, -0.532, -0.733 ], "z_axis": [ 0.767, 0.221, -0.603 ], "quaternion": [ -0.295, 0.809, -0.383, 0.334 ] } }, { "index": 39, "index_chain": 39, "chain_name": "2", "nt_resnum": 39, "nt_name": "A", "nt_code": "A", "nt_id": "///2/39", "linked_nts": [ "///2/38", "///2/40" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -86.916, "beta": 163.880, "gamma": 98.884, "delta": 82.225, "epsilon": -119.952, "zeta": -59.352, "epsilon_zeta": -60.599, "bb_type": "--", "chi": 179.705, "glyco_bond": "anti", "C5prime_xyz": [ -1.644, 8.422, 1.675 ], "P_xyz": [ 0.788, 9.319, 1.283 ], "form": ".", "ssZp": 4.640, "Dp": 4.678, "splay_angle": 41.524, "splay_distance": 6.276, "splay_ratio": 0.354, "d22": null, "d64": null, "eta": -162.607, "theta": -115.461, "eta_prime": -173.318, "theta_prime": -111.964, "eta_base": 171.444, "theta_base": -55.802, "v0": 1.193, "v1": -22.884, "v2": 34.621, "v3": -34.891, "v4": 21.255, "amplitude": 36.155, "phase_angle": 16.750, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 233.207, 169.446, 183.059 ], "x_axis": [ 0.574, -0.584, 0.573 ], "y_axis": [ -0.241, -0.790, -0.563 ], "z_axis": [ 0.782, 0.185, -0.595 ], "quaternion": [ -0.218, 0.860, -0.240, 0.394 ] } }, { "index": 40, "index_chain": 40, "chain_name": "2", "nt_resnum": 40, "nt_name": "A", "nt_code": "A", "nt_id": "///2/40", "linked_nts": [ "///2/39", "///2/41" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart", "alpha": -64.240, "beta": 158.009, "gamma": 57.959, "delta": 82.607, "epsilon": -140.193, "zeta": -172.278, "epsilon_zeta": 32.085, "bb_type": "--", "chi": -167.539, "glyco_bond": "anti", "C5prime_xyz": [ -1.274, 8.567, 0.981 ], "P_xyz": [ 1.345, 8.709, 0.854 ], "form": ".", "ssZp": 4.594, "Dp": 4.702, "splay_angle": 117.196, "splay_distance": 17.499, "splay_ratio": 0.857, "d22": null, "d64": null, "eta": 153.119, "theta": 140.764, "eta_prime": -171.394, "theta_prime": 139.931, "eta_base": -84.904, "theta_base": 153.428, "v0": 4.563, "v1": -25.766, "v2": 36.040, "v3": -34.401, "v4": 18.832, "amplitude": 36.800, "phase_angle": 11.668, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.503, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 237.600, 165.131, 181.851 ], "x_axis": [ -0.079, -0.915, -0.396 ], "y_axis": [ -0.579, 0.365, -0.729 ], "z_axis": [ 0.812, 0.171, -0.558 ], "quaternion": [ 0.427, -0.528, 0.708, -0.197 ] } }, { "index": 41, "index_chain": 41, "chain_name": "2", "nt_resnum": 41, "nt_name": "G", "nt_code": "G", "nt_id": "///2/41", "linked_nts": [ "///2/40", "///2/42" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,multiplet,internal-loop,junction-loop,cap-donor,splayed-apart", "alpha": 58.595, "beta": -149.026, "gamma": -50.173, "delta": 141.542, "epsilon": -150.000, "zeta": 173.896, "epsilon_zeta": 36.104, "bb_type": "--", "chi": -129.646, "glyco_bond": "anti", "C5prime_xyz": [ -2.176, 8.768, -0.769 ], "P_xyz": [ -2.439, 11.386, -0.728 ], "form": ".", "ssZp": 2.222, "Dp": 2.135, "splay_angle": 104.256, "splay_distance": 16.529, "splay_ratio": 0.791, "d22": null, "d64": null, "eta": -107.185, "theta": 103.349, "eta_prime": -130.139, "theta_prime": 97.549, "eta_base": -176.162, "theta_base": 84.372, "v0": -25.706, "v1": 37.160, "v2": -33.757, "v3": 19.783, "v4": 3.544, "amplitude": 37.001, "phase_angle": 155.830, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 242.045, 181.577, 177.855 ], "x_axis": [ 0.763, -0.232, 0.603 ], "y_axis": [ -0.189, -0.973, -0.135 ], "z_axis": [ 0.618, -0.011, -0.786 ], "quaternion": [ -0.033, 0.938, -0.112, 0.325 ] } }, { "index": 42, "index_chain": 42, "chain_name": "2", "nt_resnum": 42, "nt_name": "A", "nt_code": "A", "nt_id": "///2/42", "linked_nts": [ "///2/41", "///2/43" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -72.927, "beta": 164.308, "gamma": -67.562, "delta": 83.225, "epsilon": 169.748, "zeta": -77.080, "epsilon_zeta": -113.171, "bb_type": "BI", "chi": -136.616, "glyco_bond": "anti", "C5prime_xyz": [ -1.743, 8.736, -0.850 ], "P_xyz": [ -1.173, 11.265, -0.468 ], "form": ".", "ssZp": 3.501, "Dp": 3.982, "splay_angle": 44.825, "splay_distance": 6.733, "splay_ratio": 0.435, "d22": null, "d64": null, "eta": 77.845, "theta": 175.015, "eta_prime": 55.590, "theta_prime": -169.049, "eta_base": 45.984, "theta_base": -88.012, "v0": -3.570, "v1": -17.063, "v2": 29.882, "v3": -32.839, "v4": 23.028, "amplitude": 32.901, "phase_angle": 24.738, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 226.679, 176.531, 174.443 ], "x_axis": [ 0.050, -0.627, 0.778 ], "y_axis": [ 0.985, -0.098, -0.142 ], "z_axis": [ 0.165, 0.773, 0.612 ], "quaternion": [ 0.625, -0.366, -0.245, -0.644 ] } }, { "index": 43, "index_chain": 43, "chain_name": "2", "nt_resnum": 43, "nt_name": "U", "nt_code": "U", "nt_id": "///2/43", "linked_nts": [ "///2/42", "///2/44" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": 173.115, "beta": -151.547, "gamma": 170.677, "delta": 145.982, "epsilon": -124.915, "zeta": -5.588, "epsilon_zeta": -119.328, "bb_type": "--", "chi": 48.426, "glyco_bond": "syn", "C5prime_xyz": [ -5.483, 3.846, 0.591 ], "P_xyz": [ -5.433, 1.608, 1.968 ], "form": ".", "ssZp": -1.495, "Dp": 1.501, "splay_angle": 48.294, "splay_distance": 8.441, "splay_ratio": 0.410, "d22": 8.042, "d64": 9.046, "eta": -149.353, "theta": -17.699, "eta_prime": -135.192, "theta_prime": -52.259, "eta_base": -69.471, "theta_base": -66.205, "v0": -21.964, "v1": 35.870, "v2": -35.321, "v3": 23.557, "v4": -1.202, "amplitude": 36.919, "phase_angle": 163.078, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.468, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 232.370, 178.391, 177.523 ], "x_axis": [ -0.700, -0.520, 0.489 ], "y_axis": [ -0.714, 0.509, -0.481 ], "z_axis": [ 0.001, -0.686, -0.728 ], "quaternion": [ -0.142, -0.360, 0.857, -0.340 ] } }, { "index": 44, "index_chain": 44, "chain_name": "2", "nt_resnum": 44, "nt_name": "U", "nt_code": "U", "nt_id": "///2/44", "linked_nts": [ "///2/43", "///2/45" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 110.053, "beta": 167.254, "gamma": 160.195, "delta": 81.749, "epsilon": -105.879, "zeta": -72.232, "epsilon_zeta": -33.647, "bb_type": "--", "chi": -153.062, "glyco_bond": "anti", "C5prime_xyz": [ -1.570, 8.815, 0.089 ], "P_xyz": [ -0.605, 10.389, -1.772 ], "form": ".", "ssZp": 3.766, "Dp": 4.628, "splay_angle": 56.888, "splay_distance": 9.142, "splay_ratio": 0.477, "d22": null, "d64": null, "eta": 92.423, "theta": -107.123, "eta_prime": 130.857, "theta_prime": -141.469, "eta_base": 147.109, "theta_base": 166.761, "v0": -1.047, "v1": -20.883, "v2": 33.538, "v3": -35.096, "v4": 22.819, "amplitude": 35.747, "phase_angle": 20.250, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 238.706, 183.929, 178.186 ], "x_axis": [ -0.059, -0.971, -0.230 ], "y_axis": [ -0.651, 0.212, -0.729 ], "z_axis": [ 0.757, 0.106, -0.645 ], "quaternion": [ 0.356, -0.586, 0.692, -0.225 ] } }, { "index": 45, "index_chain": 45, "chain_name": "2", "nt_resnum": 45, "nt_name": "A", "nt_code": "A", "nt_id": "///2/45", "linked_nts": [ "///2/44", "///2/46" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 175.851, "beta": -164.597, "gamma": 57.101, "delta": 146.380, "epsilon": -114.250, "zeta": 111.676, "epsilon_zeta": 134.074, "bb_type": "--", "chi": -108.635, "glyco_bond": "anti", "C5prime_xyz": [ -2.040, 8.264, -1.760 ], "P_xyz": [ 0.308, 9.343, -1.311 ], "form": ".", "ssZp": 1.103, "Dp": 1.268, "splay_angle": 138.160, "splay_distance": 19.671, "splay_ratio": 0.934, "d22": null, "d64": null, "eta": 48.589, "theta": 115.722, "eta_prime": 97.686, "theta_prime": 82.763, "eta_base": 67.667, "theta_base": 90.640, "v0": -20.467, "v1": 34.583, "v2": -34.747, "v3": 23.838, "v4": -2.302, "amplitude": 35.994, "phase_angle": 164.872, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.030, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 244.550, 189.670, 174.127 ], "x_axis": [ -0.379, 0.767, 0.517 ], "y_axis": [ -0.913, -0.221, -0.342 ], "z_axis": [ -0.148, -0.602, 0.784 ], "quaternion": [ 0.544, 0.120, -0.306, 0.772 ] } }, { "index": 46, "index_chain": 46, "chain_name": "2", "nt_resnum": 46, "nt_name": "A", "nt_code": "A", "nt_id": "///2/46", "linked_nts": [ "///2/45", "///2/47" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,splayed-apart", "alpha": -74.865, "beta": 154.215, "gamma": -170.030, "delta": 147.685, "epsilon": -107.928, "zeta": 77.886, "epsilon_zeta": 174.186, "bb_type": "--", "chi": -153.323, "glyco_bond": "anti", "C5prime_xyz": [ -1.842, 8.645, 0.637 ], "P_xyz": [ -0.600, 10.837, -0.091 ], "form": ".", "ssZp": 0.982, "Dp": 1.089, "splay_angle": 110.793, "splay_distance": 17.563, "splay_ratio": 0.824, "d22": null, "d64": null, "eta": 13.648, "theta": 57.644, "eta_prime": -4.244, "theta_prime": 44.761, "eta_base": -18.572, "theta_base": 37.965, "v0": -20.496, "v1": 35.232, "v2": -35.722, "v3": 24.805, "v4": -2.904, "amplitude": 36.864, "phase_angle": 165.702, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 237.189, 179.542, 158.953 ], "x_axis": [ -0.553, -0.784, 0.281 ], "y_axis": [ 0.118, 0.261, 0.958 ], "z_axis": [ -0.825, 0.563, -0.052 ], "quaternion": [ -0.405, -0.244, 0.683, 0.557 ] } }, { "index": 47, "index_chain": 47, "chain_name": "2", "nt_resnum": 47, "nt_name": "G", "nt_code": "G", "nt_id": "///2/47", "linked_nts": [ "///2/46", "///2/48" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": 54.339, "beta": 133.152, "gamma": -167.845, "delta": 80.626, "epsilon": -150.865, "zeta": -77.370, "epsilon_zeta": -73.495, "bb_type": "BI", "chi": -166.973, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.739, 0.933 ], "P_xyz": [ -1.672, 11.259, 0.223 ], "form": "A", "ssZp": 4.516, "Dp": 4.588, "splay_angle": 23.466, "splay_distance": 3.724, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 91.363, "theta": 154.391, "eta_prime": 74.344, "theta_prime": 172.030, "eta_base": 81.008, "theta_base": -153.626, "v0": 0.823, "v1": -23.170, "v2": 35.437, "v3": -35.949, "v4": 22.139, "amplitude": 37.128, "phase_angle": 17.360, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6j", "suiteness": 0.576, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 246.300, 183.065, 173.550 ], "x_axis": [ -0.582, -0.790, 0.195 ], "y_axis": [ -0.590, 0.245, -0.770 ], "z_axis": [ 0.560, -0.563, -0.608 ], "quaternion": [ 0.117, -0.442, 0.780, -0.427 ] } }, { "index": 48, "index_chain": 48, "chain_name": "2", "nt_resnum": 48, "nt_name": "C", "nt_code": "C", "nt_id": "///2/48", "linked_nts": [ "///2/47", "///2/49" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.412, "beta": 171.741, "gamma": 51.659, "delta": 80.925, "epsilon": -149.677, "zeta": -40.439, "epsilon_zeta": -109.238, "bb_type": "BI", "chi": -162.721, "glyco_bond": "anti", "C5prime_xyz": [ -1.354, 8.781, 0.684 ], "P_xyz": [ 1.209, 9.188, 1.056 ], "form": ".", "ssZp": 4.436, "Dp": 4.589, "splay_angle": 25.314, "splay_distance": 4.565, "splay_ratio": 0.233, "d22": 4.587, "d64": 5.454, "eta": 171.744, "theta": -117.987, "eta_prime": -177.030, "theta_prime": -128.908, "eta_base": -141.569, "theta_base": -113.680, "v0": 0.942, "v1": -23.001, "v2": 35.073, "v3": -35.494, "v4": 21.807, "amplitude": 36.709, "phase_angle": 17.173, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 248.905, 180.488, 172.885 ], "x_axis": [ -0.839, -0.508, -0.194 ], "y_axis": [ -0.187, 0.605, -0.774 ], "z_axis": [ 0.510, -0.613, -0.603 ], "quaternion": [ 0.202, -0.199, 0.873, -0.397 ] } }, { "index": 49, "index_chain": 49, "chain_name": "2", "nt_resnum": 49, "nt_name": "C", "nt_code": "C", "nt_id": "///2/49", "linked_nts": [ "///2/48", "///2/50" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,phosphate", "alpha": -153.411, "beta": 140.064, "gamma": 153.899, "delta": 82.225, "epsilon": 177.925, "zeta": -90.731, "epsilon_zeta": -91.345, "bb_type": "BI", "chi": -174.865, "glyco_bond": "anti", "C5prime_xyz": [ -1.311, 8.545, 1.405 ], "P_xyz": [ -0.249, 10.584, 0.138 ], "form": ".", "ssZp": 4.249, "Dp": 4.322, "splay_angle": 51.659, "splay_distance": 7.741, "splay_ratio": 0.437, "d22": null, "d64": null, "eta": 176.720, "theta": 128.839, "eta_prime": -169.794, "theta_prime": 142.016, "eta_base": -132.916, "theta_base": 149.816, "v0": 2.939, "v1": -24.249, "v2": 35.144, "v3": -34.423, "v4": 19.853, "amplitude": 36.229, "phase_angle": 14.061, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.041, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 249.709, 176.063, 172.102 ], "x_axis": [ -0.877, -0.141, -0.459 ], "y_axis": [ 0.225, 0.724, -0.652 ], "z_axis": [ 0.424, -0.675, -0.603 ], "quaternion": [ 0.247, 0.024, 0.895, -0.371 ] } }, { "index": 50, "index_chain": 50, "chain_name": "2", "nt_resnum": 50, "nt_name": "A", "nt_code": "A", "nt_id": "///2/50", "linked_nts": [ "///2/49", "///2/51" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate", "alpha": -63.153, "beta": -163.602, "gamma": 51.467, "delta": 81.720, "epsilon": -145.864, "zeta": -59.096, "epsilon_zeta": -86.767, "bb_type": "BI", "chi": -171.872, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.568, 1.231 ], "P_xyz": [ 0.905, 8.862, 2.408 ], "form": ".", "ssZp": 4.585, "Dp": 4.623, "splay_angle": 36.631, "splay_distance": 5.956, "splay_ratio": 0.320, "d22": null, "d64": null, "eta": -171.425, "theta": -101.602, "eta_prime": 178.185, "theta_prime": -105.098, "eta_base": 166.553, "theta_base": -62.552, "v0": 2.196, "v1": -23.731, "v2": 35.047, "v3": -34.778, "v4": 20.547, "amplitude": 36.326, "phase_angle": 15.246, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.834, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 256.216, 173.856, 175.667 ], "x_axis": [ -0.946, -0.204, -0.252 ], "y_axis": [ 0.042, 0.693, -0.720 ], "z_axis": [ 0.322, -0.691, -0.647 ], "quaternion": [ 0.158, -0.045, 0.906, -0.389 ] } }, { "index": 51, "index_chain": 51, "chain_name": "2", "nt_resnum": 51, "nt_name": "U", "nt_code": "U", "nt_id": "///2/51", "linked_nts": [ "///2/50", "///2/52" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": 164.430, "beta": -162.918, "gamma": 163.775, "delta": 80.789, "epsilon": -108.954, "zeta": -95.898, "epsilon_zeta": -13.056, "bb_type": "--", "chi": -175.701, "glyco_bond": "anti", "C5prime_xyz": [ -1.188, 8.404, 1.475 ], "P_xyz": [ 0.670, 9.875, 0.369 ], "form": "A", "ssZp": 4.682, "Dp": 4.809, "splay_angle": 20.204, "splay_distance": 3.202, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 158.509, "theta": -158.553, "eta_prime": -173.611, "theta_prime": -156.510, "eta_base": -105.625, "theta_base": -135.808, "v0": 5.731, "v1": -27.379, "v2": 37.519, "v3": -35.213, "v4": 18.564, "amplitude": 38.115, "phase_angle": 10.147, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.497, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 253.086, 170.888, 171.560 ], "x_axis": [ -0.472, 0.491, -0.732 ], "y_axis": [ 0.840, 0.504, -0.203 ], "z_axis": [ 0.269, -0.711, -0.650 ], "quaternion": [ 0.309, 0.411, 0.810, -0.282 ] } }, { "index": 52, "index_chain": 52, "chain_name": "2", "nt_resnum": 52, "nt_name": "G", "nt_code": "G", "nt_id": "///2/52", "linked_nts": [ "///2/51", "///2/53" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.707, "beta": 155.421, "gamma": 51.264, "delta": 78.865, "epsilon": -143.519, "zeta": -79.409, "epsilon_zeta": -64.110, "bb_type": "BI", "chi": -169.960, "glyco_bond": "anti", "C5prime_xyz": [ -1.618, 8.697, 1.082 ], "P_xyz": [ 0.959, 9.130, 1.212 ], "form": "A", "ssZp": 4.617, "Dp": 4.673, "splay_angle": 23.174, "splay_distance": 3.605, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 149.548, "theta": -146.657, "eta_prime": 162.844, "theta_prime": -146.500, "eta_base": -164.320, "theta_base": -114.979, "v0": 1.137, "v1": -24.256, "v2": 36.871, "v3": -37.255, "v4": 22.749, "amplitude": 38.548, "phase_angle": 16.962, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.176, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 252.349, 168.474, 169.591 ], "x_axis": [ -0.046, 0.949, -0.313 ], "y_axis": [ 0.991, 0.081, 0.102 ], "z_axis": [ 0.122, -0.305, -0.944 ], "quaternion": [ 0.151, 0.674, 0.720, -0.071 ] } }, { "index": 53, "index_chain": 53, "chain_name": "2", "nt_resnum": 53, "nt_name": "C", "nt_code": "C", "nt_id": "///2/53", "linked_nts": [ "///2/52", "///2/54" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop", "alpha": -63.567, "beta": 159.226, "gamma": 64.194, "delta": 80.336, "epsilon": -150.324, "zeta": -71.870, "epsilon_zeta": -78.453, "bb_type": "BI", "chi": -169.428, "glyco_bond": "anti", "C5prime_xyz": [ -1.355, 8.658, 1.071 ], "P_xyz": [ 1.232, 9.002, 0.834 ], "form": ".", "ssZp": 4.624, "Dp": 4.654, "splay_angle": 28.854, "splay_distance": 4.494, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 167.161, "theta": -143.911, "eta_prime": -176.671, "theta_prime": -144.485, "eta_base": -126.683, "theta_base": -123.391, "v0": 3.013, "v1": -25.586, "v2": 37.148, "v3": -36.397, "v4": 21.038, "amplitude": 38.311, "phase_angle": 14.156, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.730, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 251.461, 168.515, 166.098 ], "x_axis": [ 0.549, 0.803, -0.232 ], "y_axis": [ 0.834, -0.511, 0.208 ], "z_axis": [ 0.048, -0.308, -0.950 ], "quaternion": [ 0.149, 0.868, 0.472, -0.053 ] } }, { "index": 54, "index_chain": 54, "chain_name": "2", "nt_resnum": 54, "nt_name": "A", "nt_code": "A", "nt_id": "///2/54", "linked_nts": [ "///2/53", "///2/55" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -66.927, "beta": 170.698, "gamma": 70.413, "delta": 81.266, "epsilon": -162.100, "zeta": 59.882, "epsilon_zeta": 138.018, "bb_type": "--", "chi": -164.055, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.692, 0.755 ], "P_xyz": [ 1.140, 9.165, 0.531 ], "form": ".", "ssZp": 4.472, "Dp": 4.534, "splay_angle": 104.382, "splay_distance": 13.559, "splay_ratio": 0.790, "d22": null, "d64": null, "eta": 177.036, "theta": 10.736, "eta_prime": -165.292, "theta_prime": -60.152, "eta_base": -126.640, "theta_base": -136.910, "v0": 1.970, "v1": -23.983, "v2": 35.616, "v3": -35.438, "v4": 21.127, "amplitude": 36.978, "phase_angle": 15.604, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.528, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 250.719, 168.904, 161.683 ], "x_axis": [ 0.908, 0.365, -0.207 ], "y_axis": [ 0.415, -0.856, 0.308 ], "z_axis": [ -0.065, -0.366, -0.928 ], "quaternion": [ 0.175, 0.961, 0.203, -0.071 ] } }, { "index": 55, "index_chain": 55, "chain_name": "2", "nt_resnum": 55, "nt_name": "U", "nt_code": "U", "nt_id": "///2/55", "linked_nts": [ "///2/54", "///2/56" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart", "alpha": 71.563, "beta": 125.850, "gamma": 65.610, "delta": 147.042, "epsilon": -92.687, "zeta": 133.777, "epsilon_zeta": 133.536, "bb_type": "BII", "chi": -125.245, "glyco_bond": "anti", "C5prime_xyz": [ -1.993, 8.606, -0.948 ], "P_xyz": [ 0.616, 8.353, -1.031 ], "form": ".", "ssZp": 0.691, "Dp": 0.716, "splay_angle": 44.205, "splay_distance": 7.161, "splay_ratio": 0.383, "d22": null, "d64": null, "eta": -41.098, "theta": 151.515, "eta_prime": 53.730, "theta_prime": 123.345, "eta_base": 95.668, "theta_base": 166.539, "v0": -22.112, "v1": 36.341, "v2": -35.911, "v3": 24.083, "v4": -1.447, "amplitude": 37.471, "phase_angle": 163.412, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5p", "suiteness": 0.508, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 248.148, 159.612, 152.149 ], "x_axis": [ -0.894, 0.350, 0.280 ], "y_axis": [ 0.355, 0.171, 0.919 ], "z_axis": [ 0.274, 0.921, -0.277 ], "quaternion": [ -0.002, 0.230, 0.765, 0.601 ] } }, { "index": 56, "index_chain": 56, "chain_name": "2", "nt_resnum": 56, "nt_name": "G", "nt_code": "G", "nt_id": "///2/56", "linked_nts": [ "///2/55", "///2/57" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -87.383, "beta": 112.804, "gamma": 86.830, "delta": 81.528, "epsilon": -152.635, "zeta": -63.160, "epsilon_zeta": -89.476, "bb_type": "BI", "chi": -149.874, "glyco_bond": "anti", "C5prime_xyz": [ -1.236, 8.740, -0.101 ], "P_xyz": [ 0.320, 8.377, -2.182 ], "form": "A", "ssZp": 4.158, "Dp": 4.652, "splay_angle": 26.132, "splay_distance": 4.180, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": -175.426, "theta": -132.399, "eta_prime": -160.323, "theta_prime": -147.162, "eta_base": -118.486, "theta_base": -124.821, "v0": 4.734, "v1": -26.778, "v2": 37.432, "v3": -35.656, "v4": 19.498, "amplitude": 38.212, "phase_angle": 11.597, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 254.409, 157.382, 149.484 ], "x_axis": [ 0.769, 0.557, -0.313 ], "y_axis": [ 0.368, 0.014, 0.930 ], "z_axis": [ 0.522, -0.830, -0.195 ], "quaternion": [ 0.630, 0.698, 0.331, 0.075 ] } }, { "index": 57, "index_chain": 57, "chain_name": "2", "nt_resnum": 57, "nt_name": "U", "nt_code": "U", "nt_id": "///2/57", "linked_nts": [ "///2/56", "///2/58" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -70.229, "beta": 164.697, "gamma": 75.365, "delta": 80.432, "epsilon": -103.456, "zeta": -139.291, "epsilon_zeta": 35.835, "bb_type": "--", "chi": -153.801, "glyco_bond": "anti", "C5prime_xyz": [ -1.544, 8.803, 0.131 ], "P_xyz": [ 0.898, 9.320, -0.684 ], "form": ".", "ssZp": 3.789, "Dp": 4.683, "splay_angle": 57.444, "splay_distance": 9.116, "splay_ratio": 0.481, "d22": 7.301, "d64": 7.828, "eta": -173.086, "theta": 174.045, "eta_prime": -157.194, "theta_prime": -159.273, "eta_base": -116.177, "theta_base": -159.603, "v0": 0.369, "v1": -22.925, "v2": 35.508, "v3": -36.254, "v4": 22.646, "amplitude": 37.345, "phase_angle": 18.047, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.302, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 257.811, 155.806, 147.635 ], "x_axis": [ 0.861, 0.440, 0.254 ], "y_axis": [ -0.052, -0.420, 0.906 ], "z_axis": [ 0.505, -0.793, -0.339 ], "quaternion": [ 0.525, 0.810, 0.120, 0.234 ] } }, { "index": 58, "index_chain": 58, "chain_name": "2", "nt_resnum": 58, "nt_name": "C", "nt_code": "C", "nt_id": "///2/58", "linked_nts": [ "///2/57", "///2/59" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -54.127, "beta": 176.622, "gamma": 55.680, "delta": 143.823, "epsilon": -113.544, "zeta": 160.598, "epsilon_zeta": 85.858, "bb_type": "BII", "chi": -102.879, "glyco_bond": "anti", "C5prime_xyz": [ -2.221, 8.184, -2.045 ], "P_xyz": [ 0.255, 9.034, -2.225 ], "form": ".", "ssZp": 1.159, "Dp": 1.359, "splay_angle": 32.820, "splay_distance": 5.688, "splay_ratio": 0.284, "d22": 6.355, "d64": 6.279, "eta": -141.269, "theta": -178.082, "eta_prime": -147.089, "theta_prime": 151.778, "eta_base": -168.158, "theta_base": 156.514, "v0": -22.182, "v1": 35.023, "v2": -33.801, "v3": 21.872, "v4": 0.004, "amplitude": 35.698, "phase_angle": 161.238, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 259.727, 147.439, 144.564 ], "x_axis": [ 0.546, 0.830, 0.111 ], "y_axis": [ -0.083, -0.079, 0.993 ], "z_axis": [ 0.833, -0.552, 0.026 ], "quaternion": [ 0.611, 0.632, 0.295, 0.374 ] } }, { "index": 59, "index_chain": 59, "chain_name": "2", "nt_resnum": 59, "nt_name": "U", "nt_code": "U", "nt_id": "///2/59", "linked_nts": [ "///2/58", "///2/60" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,internal-loop,cap-acceptor,splayed-apart", "alpha": 84.150, "beta": -147.318, "gamma": 169.109, "delta": 81.956, "epsilon": -128.291, "zeta": -100.863, "epsilon_zeta": -27.429, "bb_type": "--", "chi": -157.550, "glyco_bond": "anti", "C5prime_xyz": [ -1.190, 8.654, 0.388 ], "P_xyz": [ 0.295, 9.571, -1.571 ], "form": ".", "ssZp": 4.310, "Dp": 4.779, "splay_angle": 87.788, "splay_distance": 12.183, "splay_ratio": 0.694, "d22": null, "d64": null, "eta": 138.076, "theta": -132.319, "eta_prime": 130.979, "theta_prime": -173.406, "eta_base": 147.504, "theta_base": 124.164, "v0": 5.554, "v1": -27.005, "v2": 36.980, "v3": -34.792, "v4": 18.471, "amplitude": 37.587, "phase_angle": 10.310, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.010, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 257.585, 142.425, 142.944 ], "x_axis": [ 0.837, 0.532, 0.131 ], "y_axis": [ 0.001, -0.240, 0.971 ], "z_axis": [ 0.548, -0.812, -0.201 ], "quaternion": [ 0.591, 0.755, 0.176, 0.225 ] } }, { "index": 60, "index_chain": 60, "chain_name": "2", "nt_resnum": 60, "nt_name": "A", "nt_code": "A", "nt_id": "///2/60", "linked_nts": [ "///2/59", "///2/61" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop,ribose-zipper,splayed-apart", "alpha": 158.223, "beta": -142.207, "gamma": 48.406, "delta": 91.637, "epsilon": -153.175, "zeta": -84.764, "epsilon_zeta": -68.411, "bb_type": "BI", "chi": -101.976, "glyco_bond": "anti", "C5prime_xyz": [ -1.432, 7.565, -2.501 ], "P_xyz": [ 1.166, 8.005, -2.509 ], "form": ".", "ssZp": 1.380, "Dp": 4.517, "splay_angle": 25.117, "splay_distance": 4.273, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 39.362, "theta": -151.091, "eta_prime": 57.840, "theta_prime": -150.405, "eta_base": 23.114, "theta_base": -148.614, "v0": 10.644, "v1": -25.882, "v2": 30.566, "v3": -25.363, "v4": 9.417, "amplitude": 30.571, "phase_angle": 358.937, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.013, "filter_rmsd": 0.038, "frame": { "rmsd": 0.008, "origin": [ 251.966, 131.834, 145.107 ], "x_axis": [ -0.563, 0.394, 0.727 ], "y_axis": [ 0.727, 0.654, 0.208 ], "z_axis": [ -0.393, 0.645, -0.655 ], "quaternion": [ -0.330, 0.331, 0.847, 0.252 ] } }, { "index": 61, "index_chain": 61, "chain_name": "2", "nt_resnum": 61, "nt_name": "A", "nt_code": "A", "nt_id": "///2/61", "linked_nts": [ "///2/60", "///2/62" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop,A-minor,ribose-zipper,cap-donor,phosphate,splayed-apart", "alpha": -55.638, "beta": 162.737, "gamma": 47.062, "delta": 79.711, "epsilon": -131.096, "zeta": -166.281, "epsilon_zeta": 35.186, "bb_type": "--", "chi": -107.889, "glyco_bond": "anti", "C5prime_xyz": [ -2.098, 8.045, -2.333 ], "P_xyz": [ 0.101, 8.102, -3.745 ], "form": ".", "ssZp": 1.267, "Dp": 4.672, "splay_angle": 157.935, "splay_distance": 18.508, "splay_ratio": 0.982, "d22": null, "d64": null, "eta": 169.777, "theta": 147.407, "eta_prime": 176.684, "theta_prime": 153.259, "eta_base": -177.893, "theta_base": -99.572, "v0": -0.326, "v1": -22.497, "v2": 35.506, "v3": -36.702, "v4": 23.338, "amplitude": 37.578, "phase_angle": 19.113, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.606, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 251.648, 135.147, 142.429 ], "x_axis": [ -0.425, 0.375, 0.824 ], "y_axis": [ 0.718, 0.694, 0.054 ], "z_axis": [ -0.552, 0.614, -0.564 ], "quaternion": [ -0.420, 0.334, 0.819, 0.204 ] } }, { "index": 62, "index_chain": 62, "chain_name": "2", "nt_resnum": 62, "nt_name": "G", "nt_code": "G", "nt_id": "///2/62", "linked_nts": [ "///2/61", "///2/63" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,cap-donor,splayed-apart", "alpha": 29.639, "beta": -179.888, "gamma": 57.011, "delta": 82.392, "epsilon": -139.150, "zeta": -72.941, "epsilon_zeta": -66.209, "bb_type": "BI", "chi": -173.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.311, 8.419, 1.344 ], "P_xyz": [ 1.261, 8.557, 1.784 ], "form": "A", "ssZp": 4.729, "Dp": 4.755, "splay_angle": 27.522, "splay_distance": 4.415, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": -63.946, "theta": -136.310, "eta_prime": -79.835, "theta_prime": -133.794, "eta_base": -177.527, "theta_base": -113.246, "v0": 7.354, "v1": -28.603, "v2": 37.844, "v3": -34.680, "v4": 17.239, "amplitude": 38.198, "phase_angle": 7.803, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.152, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 262.308, 150.275, 142.207 ], "x_axis": [ -0.305, -0.123, 0.944 ], "y_axis": [ -0.558, -0.781, -0.282 ], "z_axis": [ 0.772, -0.613, 0.170 ], "quaternion": [ 0.145, 0.571, -0.298, 0.751 ] } }, { "index": 63, "index_chain": 63, "chain_name": "2", "nt_resnum": 63, "nt_name": "U", "nt_code": "U", "nt_id": "///2/63", "linked_nts": [ "///2/62", "///2/64" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor", "alpha": -59.727, "beta": 174.391, "gamma": 57.113, "delta": 77.813, "epsilon": -131.539, "zeta": -85.544, "epsilon_zeta": -45.996, "bb_type": "BI", "chi": -162.999, "glyco_bond": "anti", "C5prime_xyz": [ -1.690, 8.756, 0.670 ], "P_xyz": [ 0.821, 9.486, 0.779 ], "form": ".", "ssZp": 4.467, "Dp": 4.732, "splay_angle": 35.026, "splay_distance": 6.402, "splay_ratio": 0.318, "d22": null, "d64": null, "eta": 176.371, "theta": -107.305, "eta_prime": -170.527, "theta_prime": -110.598, "eta_base": -136.058, "theta_base": -115.332, "v0": 0.576, "v1": -24.232, "v2": 37.366, "v3": -38.046, "v4": 23.581, "amplitude": 39.234, "phase_angle": 17.753, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 265.836, 149.516, 144.750 ], "x_axis": [ -0.561, -0.517, 0.647 ], "y_axis": [ -0.281, -0.616, -0.736 ], "z_axis": [ 0.778, -0.595, 0.201 ], "quaternion": [ -0.076, 0.462, -0.431, 0.771 ] } }, { "index": 64, "index_chain": 64, "chain_name": "2", "nt_resnum": 64, "nt_name": "A", "nt_code": "A", "nt_id": "///2/64", "linked_nts": [ "///2/63", "///2/65" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": 87.150, "beta": 143.692, "gamma": -72.201, "delta": 146.011, "epsilon": -97.224, "zeta": 169.502, "epsilon_zeta": 93.274, "bb_type": "BII", "chi": -100.719, "glyco_bond": "anti", "C5prime_xyz": [ -2.410, 8.066, -2.097 ], "P_xyz": [ -2.201, 10.677, -2.343 ], "form": ".", "ssZp": 0.752, "Dp": 0.883, "splay_angle": 122.115, "splay_distance": 16.891, "splay_ratio": 0.875, "d22": null, "d64": null, "eta": -171.770, "theta": 168.132, "eta_prime": -153.310, "theta_prime": 147.378, "eta_base": -150.669, "theta_base": 112.977, "v0": -22.698, "v1": 36.398, "v2": -35.429, "v3": 23.247, "v4": -0.544, "amplitude": 37.239, "phase_angle": 162.059, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.154, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 268.977, 146.399, 149.377 ], "x_axis": [ -0.969, -0.062, 0.240 ], "y_axis": [ -0.186, -0.459, -0.869 ], "z_axis": [ 0.164, -0.887, 0.433 ], "quaternion": [ 0.037, 0.119, -0.519, 0.846 ] } }, { "index": 65, "index_chain": 65, "chain_name": "2", "nt_resnum": 65, "nt_name": "C", "nt_code": "C", "nt_id": "///2/65", "linked_nts": [ "///2/64", "///2/66" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 55.862, "beta": 176.929, "gamma": 76.771, "delta": 82.766, "epsilon": -114.967, "zeta": -126.148, "epsilon_zeta": 11.182, "bb_type": "--", "chi": -137.009, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.711, -0.854 ], "P_xyz": [ 0.980, 8.876, -1.886 ], "form": ".", "ssZp": 3.044, "Dp": 4.697, "splay_angle": 145.731, "splay_distance": 18.458, "splay_ratio": 0.956, "d22": null, "d64": null, "eta": 2.958, "theta": -146.883, "eta_prime": 5.933, "theta_prime": -165.628, "eta_base": 28.498, "theta_base": -163.167, "v0": 1.576, "v1": -23.076, "v2": 34.558, "v3": -34.598, "v4": 20.868, "amplitude": 35.979, "phase_angle": 16.157, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4d", "suiteness": 0.247, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 280.612, 145.905, 137.142 ], "x_axis": [ -0.670, 0.523, -0.527 ], "y_axis": [ -0.722, -0.294, 0.626 ], "z_axis": [ 0.172, 0.800, 0.575 ], "quaternion": [ 0.391, -0.111, 0.448, 0.797 ] } }, { "index": 66, "index_chain": 66, "chain_name": "2", "nt_resnum": 66, "nt_name": "G", "nt_code": "G", "nt_id": "///2/66", "linked_nts": [ "///2/65", "///2/67" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": 64.323, "beta": -174.639, "gamma": 58.229, "delta": 80.337, "epsilon": -114.382, "zeta": -123.996, "epsilon_zeta": 9.615, "bb_type": "--", "chi": -145.976, "glyco_bond": "anti", "C5prime_xyz": [ -1.419, 8.799, -0.343 ], "P_xyz": [ 1.137, 9.340, -0.542 ], "form": ".", "ssZp": 3.558, "Dp": 4.747, "splay_angle": 97.925, "splay_distance": 15.368, "splay_ratio": 0.755, "d22": null, "d64": null, "eta": -44.317, "theta": -111.590, "eta_prime": -38.883, "theta_prime": -118.198, "eta_base": -56.090, "theta_base": -132.980, "v0": 1.791, "v1": -24.205, "v2": 36.165, "v3": -36.133, "v4": 21.639, "amplitude": 37.610, "phase_angle": 15.933, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.568, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 274.444, 147.742, 154.442 ], "x_axis": [ -0.708, -0.706, 0.019 ], "y_axis": [ 0.250, -0.276, -0.928 ], "z_axis": [ 0.660, -0.652, 0.372 ], "quaternion": [ -0.311, 0.221, -0.515, 0.768 ] } }, { "index": 67, "index_chain": 67, "chain_name": "2", "nt_resnum": 67, "nt_name": "C", "nt_code": "C", "nt_id": "///2/67", "linked_nts": [ "///2/66", "///2/68" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BII,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 52.837, "beta": 88.397, "gamma": 167.345, "delta": 81.370, "epsilon": -113.720, "zeta": 177.563, "epsilon_zeta": 68.718, "bb_type": "BII", "chi": -151.007, "glyco_bond": "anti", "C5prime_xyz": [ -1.585, 8.883, -0.049 ], "P_xyz": [ -2.537, 10.182, -2.123 ], "form": ".", "ssZp": 3.760, "Dp": 4.617, "splay_angle": 87.340, "splay_distance": 12.948, "splay_ratio": 0.691, "d22": null, "d64": null, "eta": -26.605, "theta": 107.752, "eta_prime": -25.938, "theta_prime": 107.127, "eta_base": -28.732, "theta_base": 73.140, "v0": -2.152, "v1": -20.204, "v2": 33.514, "v3": -35.703, "v4": 23.899, "amplitude": 36.131, "phase_angle": 21.941, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.002, "origin": [ 285.117, 136.731, 153.428 ], "x_axis": [ 0.973, 0.211, -0.096 ], "y_axis": [ -0.232, 0.883, -0.409 ], "z_axis": [ -0.001, 0.420, 0.908 ], "quaternion": [ 0.970, -0.213, 0.024, 0.114 ] } }, { "index": 68, "index_chain": 68, "chain_name": "2", "nt_resnum": 68, "nt_name": "A", "nt_code": "A", "nt_id": "///2/68", "linked_nts": [ "///2/67", "///2/69" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": 128.928, "beta": -109.561, "gamma": 59.142, "delta": 80.664, "epsilon": -168.935, "zeta": -78.046, "epsilon_zeta": -90.889, "bb_type": "BI", "chi": -154.424, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.797, 0.181 ], "P_xyz": [ 0.715, 8.792, 1.656 ], "form": "A", "ssZp": 4.243, "Dp": 4.441, "splay_angle": 25.355, "splay_distance": 4.319, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 75.908, "theta": -129.784, "eta_prime": 70.669, "theta_prime": -134.640, "eta_base": 60.894, "theta_base": -116.051, "v0": 0.437, "v1": -22.639, "v2": 34.974, "v3": -35.648, "v4": 22.203, "amplitude": 36.754, "phase_angle": 17.904, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.004, "origin": [ 272.971, 141.050, 152.213 ], "x_axis": [ 0.265, -0.011, -0.964 ], "y_axis": [ 0.740, 0.643, 0.196 ], "z_axis": [ 0.618, -0.766, 0.178 ], "quaternion": [ 0.722, 0.333, 0.548, -0.260 ] } }, { "index": 69, "index_chain": 69, "chain_name": "2", "nt_resnum": 69, "nt_name": "C", "nt_code": "C", "nt_id": "///2/69", "linked_nts": [ "///2/68", "///2/70" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": 162.290, "beta": -157.245, "gamma": 172.316, "delta": 82.281, "epsilon": -147.059, "zeta": -66.185, "epsilon_zeta": -80.873, "bb_type": "BI", "chi": -172.876, "glyco_bond": "anti", "C5prime_xyz": [ -1.222, 8.589, 1.307 ], "P_xyz": [ 0.578, 10.062, 0.099 ], "form": ".", "ssZp": 4.572, "Dp": 4.608, "splay_angle": 31.872, "splay_distance": 5.177, "splay_ratio": 0.279, "d22": null, "d64": null, "eta": 169.270, "theta": -123.470, "eta_prime": -176.106, "theta_prime": -129.238, "eta_base": -140.090, "theta_base": -80.224, "v0": 2.496, "v1": -23.710, "v2": 34.766, "v3": -34.261, "v4": 20.038, "amplitude": 35.944, "phase_angle": 14.711, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.824, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 274.138, 136.953, 151.504 ], "x_axis": [ 0.548, 0.320, -0.773 ], "y_axis": [ 0.563, 0.542, 0.624 ], "z_axis": [ 0.619, -0.777, 0.117 ], "quaternion": [ 0.743, 0.471, 0.468, -0.082 ] } }, { "index": 70, "index_chain": 70, "chain_name": "2", "nt_resnum": 70, "nt_name": "G", "nt_code": "G", "nt_id": "///2/70", "linked_nts": [ "///2/69", "///2/71" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": 150.087, "beta": -149.367, "gamma": 166.758, "delta": 81.289, "epsilon": -120.342, "zeta": -129.975, "epsilon_zeta": 9.633, "bb_type": "--", "chi": 173.514, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.218, 2.018 ], "P_xyz": [ 0.550, 9.677, 1.153 ], "form": ".", "ssZp": 4.799, "Dp": 4.792, "splay_angle": 38.958, "splay_distance": 5.740, "splay_ratio": 0.334, "d22": null, "d64": null, "eta": 151.693, "theta": 161.157, "eta_prime": -176.961, "theta_prime": 168.684, "eta_base": -97.587, "theta_base": 172.117, "v0": 4.988, "v1": -26.670, "v2": 37.046, "v3": -35.158, "v4": 19.039, "amplitude": 37.763, "phase_angle": 11.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.615, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 278.665, 136.296, 149.082 ], "x_axis": [ 0.751, 0.656, 0.068 ], "y_axis": [ -0.102, 0.014, 0.995 ], "z_axis": [ 0.652, -0.754, 0.077 ], "quaternion": [ 0.679, 0.644, 0.215, 0.279 ] } }, { "index": 71, "index_chain": 71, "chain_name": "2", "nt_resnum": 71, "nt_name": "G", "nt_code": "G", "nt_id": "///2/71", "linked_nts": [ "///2/70", "///2/72" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -59.624, "beta": 147.149, "gamma": 54.324, "delta": 82.165, "epsilon": -143.581, "zeta": -65.263, "epsilon_zeta": -78.318, "bb_type": "BI", "chi": -178.442, "glyco_bond": "anti", "C5prime_xyz": [ -1.433, 8.443, 1.595 ], "P_xyz": [ 1.189, 8.478, 1.683 ], "form": ".", "ssZp": 4.668, "Dp": 4.674, "splay_angle": 30.451, "splay_distance": 4.822, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 172.671, "theta": -124.553, "eta_prime": 170.564, "theta_prime": -117.800, "eta_base": 167.893, "theta_base": -106.441, "v0": 3.882, "v1": -25.340, "v2": 35.982, "v3": -34.740, "v4": 19.463, "amplitude": 36.886, "phase_angle": 12.712, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.650, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 277.715, 131.191, 146.635 ], "x_axis": [ 0.554, 0.820, 0.142 ], "y_axis": [ -0.134, -0.081, 0.988 ], "z_axis": [ 0.822, -0.566, 0.065 ], "quaternion": [ 0.620, 0.626, 0.274, 0.385 ] } }, { "index": 72, "index_chain": 72, "chain_name": "2", "nt_resnum": 72, "nt_name": "C", "nt_code": "C", "nt_id": "///2/72", "linked_nts": [ "///2/71", "///2/73" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop", "alpha": -95.038, "beta": -137.356, "gamma": 63.858, "delta": 149.280, "epsilon": -147.387, "zeta": -139.749, "epsilon_zeta": -7.638, "bb_type": "--", "chi": -130.410, "glyco_bond": "anti", "C5prime_xyz": [ -1.892, 8.714, -0.629 ], "P_xyz": [ -0.028, 9.435, 1.079 ], "form": ".", "ssZp": 1.743, "Dp": 1.821, "splay_angle": 53.058, "splay_distance": 8.632, "splay_ratio": 0.447, "d22": 6.123, "d64": 7.270, "eta": 172.579, "theta": -131.503, "eta_prime": -161.951, "theta_prime": 169.925, "eta_base": -137.067, "theta_base": 111.243, "v0": -22.079, "v1": 37.394, "v2": -37.528, "v3": 25.728, "v4": -2.513, "amplitude": 38.876, "phase_angle": 164.868, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.254, "filter_rmsd": 0.061, "frame": { "rmsd": 0.002, "origin": [ 282.314, 130.396, 145.423 ], "x_axis": [ -0.317, 0.834, 0.451 ], "y_axis": [ -0.469, -0.551, 0.690 ], "z_axis": [ 0.824, 0.007, 0.566 ], "quaternion": [ 0.418, 0.409, 0.223, 0.780 ] } }, { "index": 73, "index_chain": 73, "chain_name": "2", "nt_resnum": 73, "nt_name": "C", "nt_code": "C", "nt_id": "///2/73", "linked_nts": [ "///2/72", "///2/74" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate", "alpha": 50.951, "beta": -148.255, "gamma": 159.626, "delta": 80.381, "epsilon": -109.801, "zeta": -65.650, "epsilon_zeta": -44.152, "bb_type": "--", "chi": -159.170, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.789, 0.468 ], "P_xyz": [ 0.405, 9.659, -1.281 ], "form": ".", "ssZp": 4.150, "Dp": 4.747, "splay_angle": 50.262, "splay_distance": 9.068, "splay_ratio": 0.434, "d22": null, "d64": null, "eta": 71.184, "theta": -129.914, "eta_prime": 66.036, "theta_prime": -137.318, "eta_base": 35.790, "theta_base": -163.674, "v0": 1.778, "v1": -24.173, "v2": 36.070, "v3": -36.026, "v4": 21.600, "amplitude": 37.510, "phase_angle": 15.924, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 278.007, 124.704, 140.569 ], "x_axis": [ -0.755, 0.320, 0.572 ], "y_axis": [ 0.523, -0.233, 0.820 ], "z_axis": [ 0.396, 0.918, 0.008 ], "quaternion": [ -0.072, 0.343, 0.615, 0.706 ] } }, { "index": 74, "index_chain": 74, "chain_name": "2", "nt_resnum": 74, "nt_name": "G", "nt_code": "G", "nt_id": "///2/74", "linked_nts": [ "///2/73", "///2/75" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -63.276, "beta": 115.301, "gamma": -159.695, "delta": 79.076, "epsilon": -123.811, "zeta": -53.401, "epsilon_zeta": -70.410, "bb_type": "--", "chi": -173.672, "glyco_bond": "anti", "C5prime_xyz": [ -1.755, 8.652, 1.280 ], "P_xyz": [ -2.588, 11.128, 1.016 ], "form": ".", "ssZp": 4.633, "Dp": 4.714, "splay_angle": 62.327, "splay_distance": 10.338, "splay_ratio": 0.524, "d22": null, "d64": null, "eta": -86.507, "theta": -171.627, "eta_prime": -81.824, "theta_prime": -160.211, "eta_base": -90.051, "theta_base": -176.692, "v0": -0.076, "v1": -23.074, "v2": 36.120, "v3": -37.197, "v4": 23.494, "amplitude": 38.140, "phase_angle": 18.730, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 281.333, 132.675, 137.808 ], "x_axis": [ 0.400, 0.891, 0.214 ], "y_axis": [ 0.407, -0.382, 0.830 ], "z_axis": [ 0.821, -0.244, -0.515 ], "quaternion": [ 0.354, 0.758, 0.428, 0.342 ] } }, { "index": 75, "index_chain": 75, "chain_name": "2", "nt_resnum": 75, "nt_name": "G", "nt_code": "G", "nt_id": "///2/75", "linked_nts": [ "///2/74", "///2/76" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-stack,hairpin-loop,splayed-apart", "alpha": -63.799, "beta": 147.803, "gamma": 179.653, "delta": 82.268, "epsilon": -144.335, "zeta": -109.059, "epsilon_zeta": -35.276, "bb_type": "BI", "chi": 166.364, "glyco_bond": "anti", "C5prime_xyz": [ -1.561, 7.996, 2.363 ], "P_xyz": [ -0.780, 10.502, 2.449 ], "form": ".", "ssZp": 4.523, "Dp": 4.693, "splay_angle": 121.141, "splay_distance": 14.932, "splay_ratio": 0.871, "d22": null, "d64": null, "eta": -80.287, "theta": 173.219, "eta_prime": -64.785, "theta_prime": 172.687, "eta_base": -55.718, "theta_base": -169.663, "v0": 5.563, "v1": -26.814, "v2": 36.711, "v3": -34.466, "v4": 18.253, "amplitude": 37.302, "phase_angle": 10.206, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 287.016, 128.903, 130.041 ], "x_axis": [ 0.852, -0.492, -0.181 ], "y_axis": [ 0.147, -0.109, 0.983 ], "z_axis": [ -0.503, -0.864, -0.020 ], "quaternion": [ 0.656, 0.704, -0.123, -0.243 ] } }, { "index": 76, "index_chain": 76, "chain_name": "2", "nt_resnum": 76, "nt_name": "U", "nt_code": "U", "nt_id": "///2/76", "linked_nts": [ "///2/75", "///2/77" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-stack,hairpin-loop,splayed-apart", "alpha": 73.354, "beta": 151.559, "gamma": 63.382, "delta": 80.839, "epsilon": -157.035, "zeta": -165.623, "epsilon_zeta": 8.589, "bb_type": "--", "chi": -162.608, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.710, 0.671 ], "P_xyz": [ 1.129, 9.012, 0.145 ], "form": ".", "ssZp": 4.481, "Dp": 4.585, "splay_angle": 79.406, "splay_distance": 10.974, "splay_ratio": 0.639, "d22": null, "d64": null, "eta": -71.683, "theta": 96.979, "eta_prime": -58.809, "theta_prime": 178.920, "eta_base": -78.428, "theta_base": -174.615, "v0": 2.229, "v1": -24.406, "v2": 36.059, "v3": -35.778, "v4": 21.164, "amplitude": 37.379, "phase_angle": 15.275, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.534, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 273.437, 124.041, 133.903 ], "x_axis": [ 0.125, -0.600, 0.790 ], "y_axis": [ 0.937, 0.333, 0.105 ], "z_axis": [ -0.326, 0.727, 0.604 ], "quaternion": [ 0.718, -0.217, -0.389, -0.535 ] } }, { "index": 77, "index_chain": 77, "chain_name": "2", "nt_resnum": 77, "nt_name": "A", "nt_code": "A", "nt_id": "///2/77", "linked_nts": [ "///2/76", "///2/78" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -108.423, "beta": -113.609, "gamma": 70.050, "delta": 83.272, "epsilon": -151.029, "zeta": -74.806, "epsilon_zeta": -76.223, "bb_type": "BI", "chi": -159.261, "glyco_bond": "anti", "C5prime_xyz": [ -1.245, 8.665, 0.497 ], "P_xyz": [ 1.083, 8.176, 1.604 ], "form": "A", "ssZp": 4.410, "Dp": 4.621, "splay_angle": 26.614, "splay_distance": 4.155, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": -127.434, "theta": -136.203, "eta_prime": 143.721, "theta_prime": -134.012, "eta_base": 114.843, "theta_base": -108.994, "v0": 3.892, "v1": -24.958, "v2": 35.352, "v3": -34.073, "v4": 19.064, "amplitude": 36.222, "phase_angle": 12.583, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 270.339, 134.568, 133.983 ], "x_axis": [ -0.138, -0.840, -0.525 ], "y_axis": [ 0.985, -0.173, 0.019 ], "z_axis": [ -0.107, -0.514, 0.851 ], "quaternion": [ 0.621, 0.215, 0.168, -0.735 ] } }, { "index": 78, "index_chain": 78, "chain_name": "2", "nt_resnum": 78, "nt_name": "C", "nt_code": "C", "nt_id": "///2/78", "linked_nts": [ "///2/77", "///2/79" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -59.807, "beta": 167.715, "gamma": 58.462, "delta": 81.909, "epsilon": -107.018, "zeta": -91.903, "epsilon_zeta": -15.115, "bb_type": "--", "chi": -159.403, "glyco_bond": "anti", "C5prime_xyz": [ -1.251, 8.746, 0.498 ], "P_xyz": [ 1.359, 9.002, 0.376 ], "form": ".", "ssZp": 4.129, "Dp": 4.743, "splay_angle": 123.160, "splay_distance": 15.996, "splay_ratio": 0.880, "d22": null, "d64": null, "eta": -175.925, "theta": -92.974, "eta_prime": -165.066, "theta_prime": -115.044, "eta_base": -129.342, "theta_base": -148.001, "v0": 3.117, "v1": -24.740, "v2": 35.813, "v3": -34.990, "v4": 20.098, "amplitude": 36.890, "phase_angle": 13.878, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.926, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 268.813, 131.798, 136.678 ], "x_axis": [ 0.440, -0.789, -0.428 ], "y_axis": [ 0.890, 0.319, 0.326 ], "z_axis": [ -0.120, -0.525, 0.843 ], "quaternion": [ 0.806, 0.264, 0.095, -0.521 ] } }, { "index": 79, "index_chain": 79, "chain_name": "2", "nt_resnum": 79, "nt_name": "A", "nt_code": "A", "nt_id": "///2/79", "linked_nts": [ "///2/78", "///2/80" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": 78.290, "beta": 163.529, "gamma": 52.306, "delta": 81.319, "epsilon": -129.943, "zeta": -59.014, "epsilon_zeta": -70.929, "bb_type": "BI", "chi": -179.971, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.311, 1.674 ], "P_xyz": [ 1.265, 8.378, 2.101 ], "form": ".", "ssZp": 4.779, "Dp": 4.780, "splay_angle": 34.534, "splay_distance": 5.285, "splay_ratio": 0.300, "d22": null, "d64": null, "eta": -76.372, "theta": -115.264, "eta_prime": -46.226, "theta_prime": -111.863, "eta_base": -27.924, "theta_base": -66.965, "v0": 5.775, "v1": -27.371, "v2": 37.442, "v3": -35.112, "v4": 18.511, "amplitude": 38.029, "phase_angle": 10.076, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.775, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 273.095, 131.726, 152.089 ], "x_axis": [ 0.766, 0.623, 0.161 ], "y_axis": [ 0.215, -0.012, -0.977 ], "z_axis": [ -0.607, 0.782, -0.143 ], "quaternion": [ 0.635, -0.693, -0.302, 0.161 ] } }, { "index": 80, "index_chain": 80, "chain_name": "2", "nt_resnum": 80, "nt_name": "G", "nt_code": "G", "nt_id": "///2/80", "linked_nts": [ "///2/79", "///2/81" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -66.050, "beta": 171.313, "gamma": 58.163, "delta": 80.829, "epsilon": -153.217, "zeta": -75.508, "epsilon_zeta": -77.708, "bb_type": "BI", "chi": -170.939, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.644, 1.160 ], "P_xyz": [ 1.165, 9.006, 1.494 ], "form": "A", "ssZp": 4.589, "Dp": 4.613, "splay_angle": 24.194, "splay_distance": 3.820, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 161.393, "theta": -150.102, "eta_prime": -169.833, "theta_prime": -149.562, "eta_base": -95.591, "theta_base": -132.383, "v0": 2.504, "v1": -24.557, "v2": 36.082, "v3": -35.603, "v4": 20.879, "amplitude": 37.327, "phase_angle": 14.839, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.741, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 274.217, 136.877, 151.718 ], "x_axis": [ 0.602, 0.273, -0.751 ], "y_axis": [ -0.544, -0.547, -0.636 ], "z_axis": [ -0.584, 0.791, -0.180 ], "quaternion": [ -0.467, 0.763, -0.089, -0.437 ] } }, { "index": 81, "index_chain": 81, "chain_name": "2", "nt_resnum": 81, "nt_name": "U", "nt_code": "U", "nt_id": "///2/81", "linked_nts": [ "///2/80", "///2/82" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.181, "beta": 174.876, "gamma": 53.505, "delta": 81.659, "epsilon": -153.281, "zeta": -70.544, "epsilon_zeta": -82.738, "bb_type": "BI", "chi": -163.316, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.724, 0.731 ], "P_xyz": [ 1.102, 9.178, 1.165 ], "form": ".", "ssZp": 4.434, "Dp": 4.552, "splay_angle": 37.189, "splay_distance": 5.945, "splay_ratio": 0.321, "d22": null, "d64": null, "eta": 174.720, "theta": -107.655, "eta_prime": -174.009, "theta_prime": -109.702, "eta_base": -144.512, "theta_base": -67.029, "v0": 1.002, "v1": -22.610, "v2": 34.411, "v3": -34.806, "v4": 21.334, "amplitude": 35.998, "phase_angle": 17.074, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.951, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 273.485, 140.551, 152.469 ], "x_axis": [ 0.282, -0.025, -0.959 ], "y_axis": [ -0.778, -0.591, -0.213 ], "z_axis": [ -0.561, 0.807, -0.186 ], "quaternion": [ -0.355, 0.717, -0.280, -0.530 ] } }, { "index": 82, "index_chain": 82, "chain_name": "2", "nt_resnum": 82, "nt_name": "G", "nt_code": "G", "nt_id": "///2/82", "linked_nts": [ "///2/81", "///2/83" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 154.443, "beta": -139.159, "gamma": 165.504, "delta": 81.654, "epsilon": -121.664, "zeta": -149.084, "epsilon_zeta": 27.420, "bb_type": "--", "chi": 179.200, "glyco_bond": "anti", "C5prime_xyz": [ -1.459, 8.398, 1.721 ], "P_xyz": [ 0.556, 9.583, 0.539 ], "form": ".", "ssZp": 4.737, "Dp": 4.753, "splay_angle": 54.462, "splay_distance": 7.946, "splay_ratio": 0.458, "d22": null, "d64": null, "eta": 160.943, "theta": 145.983, "eta_prime": -166.914, "theta_prime": 154.049, "eta_base": -95.322, "theta_base": 162.138, "v0": 3.739, "v1": -25.319, "v2": 36.120, "v3": -34.954, "v4": 19.703, "amplitude": 37.066, "phase_angle": 12.967, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.516, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 271.644, 142.504, 147.163 ], "x_axis": [ -0.503, -0.514, -0.695 ], "y_axis": [ -0.673, -0.271, 0.688 ], "z_axis": [ -0.542, 0.814, -0.210 ], "quaternion": [ 0.064, -0.495, 0.601, 0.625 ] } }, { "index": 83, "index_chain": 83, "chain_name": "2", "nt_resnum": 83, "nt_name": "A", "nt_code": "A", "nt_id": "///2/83", "linked_nts": [ "///2/82", "///2/84" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -54.445, "beta": 143.002, "gamma": 51.445, "delta": 80.707, "epsilon": -129.610, "zeta": -61.572, "epsilon_zeta": -68.037, "bb_type": "BI", "chi": -176.901, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.431, 1.504 ], "P_xyz": [ 1.193, 8.452, 1.488 ], "form": ".", "ssZp": 4.736, "Dp": 4.762, "splay_angle": 35.767, "splay_distance": 5.492, "splay_ratio": 0.309, "d22": null, "d64": null, "eta": -176.016, "theta": -113.687, "eta_prime": 175.273, "theta_prime": -112.511, "eta_base": 164.791, "theta_base": -72.379, "v0": 4.141, "v1": -26.262, "v2": 37.209, "v3": -35.812, "v4": 19.978, "amplitude": 38.113, "phase_angle": 12.500, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.643, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 273.706, 149.712, 149.795 ], "x_axis": [ -0.216, -0.601, -0.770 ], "y_axis": [ -0.719, -0.435, 0.542 ], "z_axis": [ -0.660, 0.671, -0.338 ], "quaternion": [ -0.052, 0.624, -0.529, -0.573 ] } }, { "index": 84, "index_chain": 84, "chain_name": "2", "nt_resnum": 84, "nt_name": "A", "nt_code": "A", "nt_id": "///2/84", "linked_nts": [ "///2/83", "///2/85" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,ribose-zipper", "alpha": -60.736, "beta": 168.026, "gamma": 58.203, "delta": 80.169, "epsilon": -132.234, "zeta": -70.727, "epsilon_zeta": -61.507, "bb_type": "BI", "chi": -168.063, "glyco_bond": "anti", "C5prime_xyz": [ -1.467, 8.641, 0.992 ], "P_xyz": [ 1.116, 9.065, 1.147 ], "form": ".", "ssZp": 4.575, "Dp": 4.717, "splay_angle": 27.979, "splay_distance": 4.456, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 168.259, "theta": -129.647, "eta_prime": -165.482, "theta_prime": -127.540, "eta_base": -97.320, "theta_base": -89.136, "v0": 2.113, "v1": -24.476, "v2": 36.338, "v3": -36.116, "v4": 21.433, "amplitude": 37.704, "phase_angle": 15.474, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.752, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 269.903, 149.436, 145.842 ], "x_axis": [ -0.721, -0.690, 0.058 ], "y_axis": [ -0.189, 0.278, 0.942 ], "z_axis": [ -0.666, 0.668, -0.331 ], "quaternion": [ -0.237, -0.288, 0.763, 0.527 ] } }, { "index": 85, "index_chain": 85, "chain_name": "2", "nt_resnum": 85, "nt_name": "A", "nt_code": "A", "nt_id": "///2/85", "linked_nts": [ "///2/84", "///2/86" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper", "alpha": -57.663, "beta": 162.342, "gamma": 53.264, "delta": 78.596, "epsilon": -150.883, "zeta": -84.498, "epsilon_zeta": -66.385, "bb_type": "BI", "chi": -173.515, "glyco_bond": "anti", "C5prime_xyz": [ -1.891, 8.602, 1.260 ], "P_xyz": [ 0.612, 9.264, 1.629 ], "form": "A", "ssZp": 4.617, "Dp": 4.611, "splay_angle": 26.993, "splay_distance": 4.205, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 160.910, "theta": -158.693, "eta_prime": -176.621, "theta_prime": -158.491, "eta_base": -115.491, "theta_base": -139.888, "v0": -0.890, "v1": -22.457, "v2": 35.947, "v3": -37.454, "v4": 24.163, "amplitude": 38.230, "phase_angle": 19.901, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.799, "filter_rmsd": 0.038, "frame": { "rmsd": 0.008, "origin": [ 265.620, 149.581, 144.622 ], "x_axis": [ -0.470, -0.454, 0.757 ], "y_axis": [ 0.385, 0.666, 0.639 ], "z_axis": [ -0.794, 0.592, -0.138 ], "quaternion": [ 0.514, 0.023, -0.754, -0.408 ] } }, { "index": 86, "index_chain": 86, "chain_name": "2", "nt_resnum": 86, "nt_name": "C", "nt_code": "C", "nt_id": "///2/86", "linked_nts": [ "///2/85", "///2/87" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate", "alpha": -62.056, "beta": 167.363, "gamma": 58.716, "delta": 78.392, "epsilon": -145.226, "zeta": -54.543, "epsilon_zeta": -90.683, "bb_type": "BI", "chi": -175.162, "glyco_bond": "anti", "C5prime_xyz": [ -1.489, 8.592, 1.388 ], "P_xyz": [ 1.075, 9.028, 1.674 ], "form": ".", "ssZp": 4.695, "Dp": 4.695, "splay_angle": 30.487, "splay_distance": 4.787, "splay_ratio": 0.268, "d22": 3.796, "d64": 4.261, "eta": 171.966, "theta": -126.697, "eta_prime": 179.543, "theta_prime": -125.688, "eta_base": -150.538, "theta_base": -85.312, "v0": 2.512, "v1": -25.988, "v2": 38.269, "v3": -37.809, "v4": 22.228, "amplitude": 39.617, "phase_angle": 14.990, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.826, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 262.132, 150.195, 142.355 ], "x_axis": [ -0.230, -0.113, 0.967 ], "y_axis": [ 0.598, 0.767, 0.232 ], "z_axis": [ -0.768, 0.632, -0.108 ], "quaternion": [ 0.598, -0.167, -0.725, -0.298 ] } }, { "index": 87, "index_chain": 87, "chain_name": "2", "nt_resnum": 87, "nt_name": "U", "nt_code": "U", "nt_id": "///2/87", "linked_nts": [ "///2/86", "///2/88" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -76.328, "beta": -178.879, "gamma": 60.982, "delta": 77.951, "epsilon": -146.112, "zeta": -69.317, "epsilon_zeta": -76.795, "bb_type": "BI", "chi": -170.623, "glyco_bond": "anti", "C5prime_xyz": [ -1.519, 8.654, 1.121 ], "P_xyz": [ 1.007, 9.229, 1.533 ], "form": "A", "ssZp": 4.652, "Dp": 4.683, "splay_angle": 18.428, "splay_distance": 3.018, "splay_ratio": 0.167, "d22": null, "d64": null, "eta": 165.050, "theta": -143.461, "eta_prime": -173.146, "theta_prime": -142.088, "eta_base": -108.859, "theta_base": -109.703, "v0": 1.573, "v1": -24.941, "v2": 37.576, "v3": -37.665, "v4": 22.726, "amplitude": 39.155, "phase_angle": 16.327, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.692, "filter_rmsd": 0.101, "frame": { "rmsd": 0.005, "origin": [ 258.410, 151.642, 144.994 ], "x_axis": [ 0.348, 0.482, 0.804 ], "y_axis": [ 0.583, 0.561, -0.588 ], "z_axis": [ -0.735, 0.673, -0.086 ], "quaternion": [ 0.675, -0.467, -0.570, -0.037 ] } }, { "index": 88, "index_chain": 88, "chain_name": "2", "nt_resnum": 88, "nt_name": "G", "nt_code": "G", "nt_id": "///2/88", "linked_nts": [ "///2/87", "///2/89" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -74.527, "beta": 178.767, "gamma": 55.421, "delta": 80.773, "epsilon": -152.093, "zeta": -70.335, "epsilon_zeta": -81.759, "bb_type": "BI", "chi": -159.659, "glyco_bond": "anti", "C5prime_xyz": [ -1.454, 8.803, 0.488 ], "P_xyz": [ 1.095, 9.367, 0.738 ], "form": "A", "ssZp": 4.406, "Dp": 4.596, "splay_angle": 25.034, "splay_distance": 3.951, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 161.781, "theta": -146.130, "eta_prime": 175.654, "theta_prime": -143.724, "eta_base": -137.279, "theta_base": -109.775, "v0": 1.197, "v1": -23.453, "v2": 35.503, "v3": -35.794, "v4": 21.835, "amplitude": 37.085, "phase_angle": 16.794, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.894, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 256.405, 152.993, 146.801 ], "x_axis": [ 0.761, 0.589, 0.271 ], "y_axis": [ 0.106, 0.299, -0.948 ], "z_axis": [ -0.639, 0.751, 0.166 ], "quaternion": [ 0.746, -0.569, -0.305, 0.162 ] } }, { "index": 89, "index_chain": 89, "chain_name": "2", "nt_resnum": 89, "nt_name": "C", "nt_code": "C", "nt_id": "///2/89", "linked_nts": [ "///2/88", "///2/90" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -67.025, "beta": 169.614, "gamma": 62.067, "delta": 81.135, "epsilon": -138.113, "zeta": -78.111, "epsilon_zeta": -60.002, "bb_type": "BI", "chi": -158.565, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.777, 0.434 ], "P_xyz": [ 1.283, 9.130, 0.213 ], "form": "A", "ssZp": 4.361, "Dp": 4.691, "splay_angle": 25.103, "splay_distance": 4.001, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 172.715, "theta": -141.461, "eta_prime": -172.229, "theta_prime": -140.642, "eta_base": -125.352, "theta_base": -115.066, "v0": 2.420, "v1": -24.470, "v2": 36.013, "v3": -35.601, "v4": 20.922, "amplitude": 37.278, "phase_angle": 14.968, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.857, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 255.251, 156.349, 148.536 ], "x_axis": [ 0.672, 0.648, -0.359 ], "y_axis": [ -0.421, -0.064, -0.905 ], "z_axis": [ -0.609, 0.759, 0.230 ], "quaternion": [ 0.678, -0.614, -0.092, 0.394 ] } }, { "index": 90, "index_chain": 90, "chain_name": "2", "nt_resnum": 90, "nt_name": "G", "nt_code": "G", "nt_id": "///2/90", "linked_nts": [ "///2/89", "///2/91" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -71.109, "beta": 173.714, "gamma": 56.377, "delta": 82.723, "epsilon": -149.879, "zeta": -66.097, "epsilon_zeta": -83.782, "bb_type": "BI", "chi": -161.155, "glyco_bond": "anti", "C5prime_xyz": [ -1.403, 8.762, 0.611 ], "P_xyz": [ 1.177, 9.175, 0.855 ], "form": ".", "ssZp": 4.402, "Dp": 4.575, "splay_angle": 23.139, "splay_distance": 3.618, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 163.310, "theta": -137.898, "eta_prime": 176.791, "theta_prime": -136.728, "eta_base": -143.639, "theta_base": -90.751, "v0": 1.828, "v1": -23.237, "v2": 34.563, "v3": -34.459, "v4": 20.590, "amplitude": 35.910, "phase_angle": 15.742, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 254.378, 160.129, 149.513 ], "x_axis": [ 0.530, 0.111, -0.841 ], "y_axis": [ -0.759, -0.381, -0.528 ], "z_axis": [ -0.379, 0.918, -0.117 ], "quaternion": [ 0.508, -0.712, 0.227, 0.428 ] } }, { "index": 91, "index_chain": 91, "chain_name": "2", "nt_resnum": 91, "nt_name": "A", "nt_code": "A", "nt_id": "///2/91", "linked_nts": [ "///2/90", "///2/92" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -69.262, "beta": 166.063, "gamma": 62.218, "delta": 82.494, "epsilon": -149.197, "zeta": 81.071, "epsilon_zeta": 129.732, "bb_type": "--", "chi": -156.225, "glyco_bond": "anti", "C5prime_xyz": [ -1.242, 8.695, 0.303 ], "P_xyz": [ 1.347, 8.941, -0.075 ], "form": ".", "ssZp": 4.333, "Dp": 4.641, "splay_angle": 53.846, "splay_distance": 7.433, "splay_ratio": 0.469, "d22": null, "d64": null, "eta": 165.604, "theta": 38.928, "eta_prime": -173.250, "theta_prime": -8.357, "eta_base": -108.126, "theta_base": -49.894, "v0": 3.968, "v1": -25.221, "v2": 35.705, "v3": -34.365, "v4": 19.204, "amplitude": 36.573, "phase_angle": 12.509, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.838, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 254.411, 163.065, 147.398 ], "x_axis": [ -0.172, -0.111, -0.979 ], "y_axis": [ -0.962, -0.197, 0.191 ], "z_axis": [ -0.214, 0.974, -0.073 ], "quaternion": [ 0.374, -0.524, 0.512, 0.569 ] } }, { "index": 92, "index_chain": 92, "chain_name": "2", "nt_resnum": 92, "nt_name": "A", "nt_code": "A", "nt_id": "///2/92", "linked_nts": [ "///2/91", "///2/93" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": 39.046, "beta": 144.820, "gamma": 157.833, "delta": 148.205, "epsilon": -87.748, "zeta": -45.883, "epsilon_zeta": -41.865, "bb_type": "--", "chi": 49.461, "glyco_bond": "syn", "C5prime_xyz": [ -5.421, 3.730, 0.627 ], "P_xyz": [ -6.053, 1.995, 2.493 ], "form": ".", "ssZp": -0.557, "Dp": 0.569, "splay_angle": 92.820, "splay_distance": 13.746, "splay_ratio": 0.725, "d22": null, "d64": null, "eta": 88.876, "theta": -82.764, "eta_prime": 110.625, "theta_prime": -68.282, "eta_base": 154.869, "theta_base": -38.228, "v0": -21.306, "v1": 36.189, "v2": -36.403, "v3": 25.065, "v4": -2.561, "amplitude": 37.674, "phase_angle": 165.072, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "5q", "suiteness": 0.201, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 247.713, 164.431, 144.480 ], "x_axis": [ -0.024, 0.207, -0.978 ], "y_axis": [ -0.948, 0.304, 0.088 ], "z_axis": [ 0.316, 0.930, 0.189 ], "quaternion": [ 0.606, -0.347, 0.534, 0.477 ] } }, { "index": 93, "index_chain": 93, "chain_name": "2", "nt_resnum": 93, "nt_name": "U", "nt_code": "U", "nt_id": "///2/93", "linked_nts": [ "///2/92", "///2/94" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -75.485, "beta": -168.913, "gamma": 60.299, "delta": 79.906, "epsilon": -137.825, "zeta": -60.251, "epsilon_zeta": -77.574, "bb_type": "BI", "chi": -175.439, "glyco_bond": "anti", "C5prime_xyz": [ -1.272, 8.435, 1.430 ], "P_xyz": [ 1.261, 8.583, 2.089 ], "form": ".", "ssZp": 4.766, "Dp": 4.769, "splay_angle": 33.244, "splay_distance": 4.943, "splay_ratio": 0.287, "d22": null, "d64": null, "eta": 153.557, "theta": -126.334, "eta_prime": -162.483, "theta_prime": -121.631, "eta_base": -148.814, "theta_base": -75.016, "v0": 5.792, "v1": -28.219, "v2": 38.760, "v3": -36.414, "v4": 19.277, "amplitude": 39.395, "phase_angle": 10.300, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.512, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 245.170, 161.919, 157.754 ], "x_axis": [ 0.438, 0.894, -0.097 ], "y_axis": [ -0.458, 0.129, -0.879 ], "z_axis": [ -0.773, 0.429, 0.466 ], "quaternion": [ 0.713, -0.459, -0.237, 0.474 ] } }, { "index": 94, "index_chain": 94, "chain_name": "2", "nt_resnum": 94, "nt_name": "G", "nt_code": "G", "nt_id": "///2/94", "linked_nts": [ "///2/93", "///2/95" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -72.442, "beta": 166.514, "gamma": 65.192, "delta": 80.392, "epsilon": -140.123, "zeta": -63.539, "epsilon_zeta": -76.584, "bb_type": "BI", "chi": 176.122, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.266, 1.871 ], "P_xyz": [ 1.261, 8.497, 2.046 ], "form": ".", "ssZp": 4.780, "Dp": 4.763, "splay_angle": 29.989, "splay_distance": 4.574, "splay_ratio": 0.265, "d22": null, "d64": null, "eta": 162.278, "theta": -129.078, "eta_prime": -172.095, "theta_prime": -128.486, "eta_base": -97.513, "theta_base": -94.474, "v0": 6.473, "v1": -28.587, "v2": 38.709, "v3": -35.984, "v4": 18.597, "amplitude": 39.225, "phase_angle": 9.306, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.688, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 243.863, 166.561, 158.842 ], "x_axis": [ -0.098, 0.606, -0.789 ], "y_axis": [ -0.552, -0.693, -0.464 ], "z_axis": [ -0.828, 0.390, 0.402 ], "quaternion": [ 0.391, -0.546, -0.025, 0.740 ] } }, { "index": 95, "index_chain": 95, "chain_name": "2", "nt_resnum": 95, "nt_name": "G", "nt_code": "G", "nt_id": "///2/95", "linked_nts": [ "///2/94", "///2/96" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,ribose-zipper,phosphate", "alpha": -73.233, "beta": -178.943, "gamma": 61.323, "delta": 81.486, "epsilon": -151.423, "zeta": -67.652, "epsilon_zeta": -83.771, "bb_type": "BI", "chi": -179.151, "glyco_bond": "anti", "C5prime_xyz": [ -1.528, 8.480, 1.619 ], "P_xyz": [ 0.970, 8.778, 2.366 ], "form": "A", "ssZp": 4.599, "Dp": 4.612, "splay_angle": 25.375, "splay_distance": 3.989, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 168.042, "theta": -142.261, "eta_prime": -172.378, "theta_prime": -139.993, "eta_base": -114.294, "theta_base": -113.174, "v0": 2.475, "v1": -24.367, "v2": 35.755, "v3": -35.301, "v4": 20.706, "amplitude": 36.990, "phase_angle": 14.844, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.823, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 241.361, 170.389, 158.945 ], "x_axis": [ -0.374, -0.121, -0.919 ], "y_axis": [ -0.203, -0.957, 0.209 ], "z_axis": [ -0.905, 0.265, 0.333 ], "quaternion": [ 0.025, -0.559, 0.145, 0.816 ] } }, { "index": 96, "index_chain": 96, "chain_name": "2", "nt_resnum": 96, "nt_name": "C", "nt_code": "C", "nt_id": "///2/96", "linked_nts": [ "///2/95", "///2/97" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper", "alpha": -72.815, "beta": -173.378, "gamma": 56.801, "delta": 83.210, "epsilon": -151.972, "zeta": -70.446, "epsilon_zeta": -81.526, "bb_type": "BI", "chi": -166.037, "glyco_bond": "anti", "C5prime_xyz": [ -1.370, 8.731, 0.889 ], "P_xyz": [ 1.117, 9.094, 1.648 ], "form": "A", "ssZp": 4.430, "Dp": 4.524, "splay_angle": 21.042, "splay_distance": 3.367, "splay_ratio": 0.184, "d22": 4.161, "d64": 4.047, "eta": 172.477, "theta": -143.708, "eta_prime": -174.541, "theta_prime": -141.063, "eta_base": -134.513, "theta_base": -111.483, "v0": 0.765, "v1": -21.939, "v2": 33.520, "v3": -34.005, "v4": 20.978, "amplitude": 35.122, "phase_angle": 17.374, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.880, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 238.424, 173.088, 158.868 ], "x_axis": [ -0.361, -0.691, -0.627 ], "y_axis": [ 0.097, -0.696, 0.712 ], "z_axis": [ -0.928, 0.196, 0.318 ], "quaternion": [ -0.256, -0.504, 0.295, 0.770 ] } }, { "index": 97, "index_chain": 97, "chain_name": "2", "nt_resnum": 97, "nt_name": "U", "nt_code": "U", "nt_id": "///2/97", "linked_nts": [ "///2/96", "///2/98" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -67.393, "beta": 170.507, "gamma": 60.718, "delta": 85.341, "epsilon": -155.190, "zeta": -73.688, "epsilon_zeta": -81.501, "bb_type": "BI", "chi": -159.931, "glyco_bond": "anti", "C5prime_xyz": [ -1.593, 8.788, 0.515 ], "P_xyz": [ 0.972, 9.265, 0.837 ], "form": ".", "ssZp": 4.135, "Dp": 4.338, "splay_angle": 21.705, "splay_distance": 3.459, "splay_ratio": 0.188, "d22": 4.862, "d64": 4.256, "eta": 170.226, "theta": -146.567, "eta_prime": -172.034, "theta_prime": -140.112, "eta_base": -128.542, "theta_base": -114.601, "v0": -1.937, "v1": -18.288, "v2": 30.296, "v3": -32.307, "v4": 21.620, "amplitude": 32.664, "phase_angle": 21.949, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.869, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 235.195, 173.948, 158.456 ], "x_axis": [ -0.183, -0.973, -0.140 ], "y_axis": [ 0.218, -0.179, 0.959 ], "z_axis": [ -0.959, 0.145, 0.245 ], "quaternion": [ -0.470, -0.433, 0.436, 0.634 ] } }, { "index": 98, "index_chain": 98, "chain_name": "2", "nt_resnum": 98, "nt_name": "C", "nt_code": "C", "nt_id": "///2/98", "linked_nts": [ "///2/97", "///2/99" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,phosphate", "alpha": -67.388, "beta": 179.406, "gamma": 71.092, "delta": 146.911, "epsilon": -83.850, "zeta": 92.146, "epsilon_zeta": 184.004, "bb_type": "--", "chi": -119.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.819, 8.539, -1.250 ], "P_xyz": [ 0.742, 9.044, -0.996 ], "form": ".", "ssZp": 0.513, "Dp": 0.630, "splay_angle": 40.367, "splay_distance": 6.646, "splay_ratio": 0.357, "d22": null, "d64": null, "eta": -150.425, "theta": 129.451, "eta_prime": -127.035, "theta_prime": 117.081, "eta_base": -104.397, "theta_base": 138.738, "v0": -20.482, "v1": 34.683, "v2": -34.866, "v3": 23.944, "v4": -2.370, "amplitude": 36.104, "phase_angle": 164.951, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.674, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 231.739, 174.003, 158.572 ], "x_axis": [ 0.045, -0.916, 0.398 ], "y_axis": [ 0.084, 0.401, 0.912 ], "z_axis": [ -0.995, -0.007, 0.095 ], "quaternion": [ 0.621, 0.370, -0.562, -0.403 ] } }, { "index": 99, "index_chain": 99, "chain_name": "2", "nt_resnum": 99, "nt_name": "A", "nt_code": "A", "nt_id": "///2/99", "linked_nts": [ "///2/98", "///2/100" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor", "alpha": 169.339, "beta": -128.376, "gamma": 71.557, "delta": 82.480, "epsilon": -157.598, "zeta": -70.512, "epsilon_zeta": -87.086, "bb_type": "BI", "chi": -173.304, "glyco_bond": "anti", "C5prime_xyz": [ -1.303, 8.460, 1.312 ], "P_xyz": [ 1.042, 7.980, 2.388 ], "form": ".", "ssZp": 4.599, "Dp": 4.605, "splay_angle": 26.429, "splay_distance": 4.567, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": 146.682, "theta": -115.607, "eta_prime": 135.509, "theta_prime": -123.285, "eta_base": 156.876, "theta_base": -108.524, "v0": 5.101, "v1": -26.409, "v2": 36.526, "v3": -34.558, "v4": 18.593, "amplitude": 37.196, "phase_angle": 10.897, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.051, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 233.860, 179.899, 156.356 ], "x_axis": [ -0.460, -0.832, 0.309 ], "y_axis": [ 0.052, 0.322, 0.945 ], "z_axis": [ -0.886, 0.451, -0.105 ], "quaternion": [ -0.435, -0.284, 0.687, 0.508 ] } }, { "index": 100, "index_chain": 100, "chain_name": "2", "nt_resnum": 100, "nt_name": "U", "nt_code": "U", "nt_id": "///2/100", "linked_nts": [ "///2/99", "///2/101" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop", "alpha": 170.209, "beta": -167.268, "gamma": 169.347, "delta": 82.664, "epsilon": -116.542, "zeta": -60.144, "epsilon_zeta": -56.397, "bb_type": "--", "chi": 178.288, "glyco_bond": "anti", "C5prime_xyz": [ -1.442, 8.340, 1.786 ], "P_xyz": [ 0.359, 10.088, 1.033 ], "form": ".", "ssZp": 4.682, "Dp": 4.717, "splay_angle": 41.914, "splay_distance": 6.416, "splay_ratio": 0.358, "d22": 4.053, "d64": 4.475, "eta": 171.348, "theta": -130.971, "eta_prime": -174.347, "theta_prime": -122.418, "eta_base": -138.005, "theta_base": -70.446, "v0": 3.274, "v1": -24.468, "v2": 35.169, "v3": -34.264, "v4": 19.565, "amplitude": 36.176, "phase_angle": 13.550, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.657, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 230.040, 179.383, 153.908 ], "x_axis": [ -0.357, -0.557, 0.750 ], "y_axis": [ 0.265, 0.709, 0.654 ], "z_axis": [ -0.896, 0.432, -0.105 ], "quaternion": [ 0.558, 0.099, -0.737, -0.368 ] } }, { "index": 101, "index_chain": 101, "chain_name": "2", "nt_resnum": 101, "nt_name": "U", "nt_code": "U", "nt_id": "///2/101", "linked_nts": [ "///2/100", "///2/102" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -61.406, "beta": 167.857, "gamma": 55.108, "delta": 82.089, "epsilon": -123.964, "zeta": -122.886, "epsilon_zeta": -1.078, "bb_type": "--", "chi": -160.563, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.688, 0.569 ], "P_xyz": [ 1.280, 8.983, 0.595 ], "form": ".", "ssZp": 4.334, "Dp": 4.735, "splay_angle": 45.000, "splay_distance": 7.304, "splay_ratio": 0.384, "d22": null, "d64": null, "eta": 163.044, "theta": -135.301, "eta_prime": -166.117, "theta_prime": -123.938, "eta_base": -94.525, "theta_base": -126.032, "v0": 3.155, "v1": -24.716, "v2": 35.662, "v3": -34.825, "v4": 19.984, "amplitude": 36.721, "phase_angle": 13.789, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.451, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 225.511, 180.256, 158.367 ], "x_axis": [ 0.164, 0.460, 0.873 ], "y_axis": [ 0.408, 0.774, -0.485 ], "z_axis": [ -0.898, 0.436, -0.061 ], "quaternion": [ 0.685, -0.336, -0.646, 0.019 ] } }, { "index": 102, "index_chain": 102, "chain_name": "2", "nt_resnum": 102, "nt_name": "A", "nt_code": "A", "nt_id": "///2/102", "linked_nts": [ "///2/101", "///2/103" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": 66.217, "beta": 145.738, "gamma": -20.523, "delta": 148.643, "epsilon": -87.591, "zeta": 116.021, "epsilon_zeta": 156.387, "bb_type": "--", "chi": -76.021, "glyco_bond": "anti", "C5prime_xyz": [ -2.857, 7.171, -2.858 ], "P_xyz": [ -1.220, 9.145, -3.412 ], "form": ".", "ssZp": 0.233, "Dp": 0.637, "splay_angle": 60.180, "splay_distance": 10.092, "splay_ratio": 0.502, "d22": null, "d64": null, "eta": -138.128, "theta": 118.890, "eta_prime": -130.282, "theta_prime": 120.071, "eta_base": -141.208, "theta_base": 136.781, "v0": -20.576, "v1": 35.469, "v2": -35.961, "v3": 25.012, "v4": -2.968, "amplitude": 37.099, "phase_angle": 165.771, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 218.748, 182.895, 159.174 ], "x_axis": [ 0.475, 0.400, 0.784 ], "y_axis": [ 0.380, 0.711, -0.592 ], "z_axis": [ -0.794, 0.579, 0.186 ], "quaternion": [ 0.770, -0.380, -0.513, 0.007 ] } }, { "index": 103, "index_chain": 103, "chain_name": "2", "nt_resnum": 103, "nt_name": "A", "nt_code": "A", "nt_id": "///2/103", "linked_nts": [ "///2/102", "///2/104" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,junction-loop,phosphate", "alpha": 173.282, "beta": 145.848, "gamma": 173.573, "delta": 146.912, "epsilon": -108.316, "zeta": 118.246, "epsilon_zeta": 133.438, "bb_type": "--", "chi": -96.463, "glyco_bond": "anti", "C5prime_xyz": [ -2.644, 7.926, -2.231 ], "P_xyz": [ -2.548, 8.283, -4.831 ], "form": ".", "ssZp": 1.089, "Dp": 1.138, "splay_angle": 50.470, "splay_distance": 8.748, "splay_ratio": 0.427, "d22": null, "d64": null, "eta": -103.304, "theta": 79.806, "eta_prime": -134.434, "theta_prime": 63.111, "eta_base": -141.689, "theta_base": 60.368, "v0": -23.650, "v1": 37.458, "v2": -36.106, "v3": 23.403, "v4": -0.050, "amplitude": 38.123, "phase_angle": 161.281, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 213.955, 178.390, 151.520 ], "x_axis": [ -0.925, 0.306, 0.225 ], "y_axis": [ 0.118, 0.793, -0.597 ], "z_axis": [ -0.361, -0.526, -0.770 ], "quaternion": [ -0.157, 0.114, 0.934, -0.301 ] } }, { "index": 104, "index_chain": 104, "chain_name": "2", "nt_resnum": 104, "nt_name": "A", "nt_code": "A", "nt_id": "///2/104", "linked_nts": [ "///2/103", "///2/105" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": 45.950, "beta": -165.899, "gamma": -176.351, "delta": 80.663, "epsilon": -132.747, "zeta": -65.029, "epsilon_zeta": -67.719, "bb_type": "BI", "chi": 172.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.551, 8.162, 2.053 ], "P_xyz": [ -0.098, 10.280, 1.546 ], "form": ".", "ssZp": 4.737, "Dp": 4.754, "splay_angle": 28.721, "splay_distance": 4.490, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 115.425, "theta": -155.553, "eta_prime": 99.252, "theta_prime": -147.951, "eta_base": 104.978, "theta_base": -102.598, "v0": 4.755, "v1": -26.858, "v2": 37.598, "v3": -35.866, "v4": 19.597, "amplitude": 38.388, "phase_angle": 11.646, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.242, "filter_rmsd": 0.040, "frame": { "rmsd": 0.004, "origin": [ 221.975, 180.342, 154.416 ], "x_axis": [ -0.966, 0.104, 0.235 ], "y_axis": [ -0.185, 0.356, -0.916 ], "z_axis": [ -0.179, -0.929, -0.325 ], "quaternion": [ -0.127, -0.025, 0.813, -0.567 ] } }, { "index": 105, "index_chain": 105, "chain_name": "2", "nt_resnum": 105, "nt_name": "U", "nt_code": "U", "nt_id": "///2/105", "linked_nts": [ "///2/104", "///2/106" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -67.394, "beta": 179.800, "gamma": 55.312, "delta": 81.639, "epsilon": -140.090, "zeta": -54.781, "epsilon_zeta": -85.309, "bb_type": "BI", "chi": -167.473, "glyco_bond": "anti", "C5prime_xyz": [ -1.513, 8.678, 0.955 ], "P_xyz": [ 0.997, 9.161, 1.543 ], "form": ".", "ssZp": 4.531, "Dp": 4.640, "splay_angle": 37.163, "splay_distance": 5.741, "splay_ratio": 0.319, "d22": 3.781, "d64": 4.157, "eta": 167.818, "theta": -121.138, "eta_prime": -172.488, "theta_prime": -115.185, "eta_base": -113.731, "theta_base": -64.092, "v0": 1.065, "v1": -23.018, "v2": 34.954, "v3": -35.285, "v4": 21.600, "amplitude": 36.543, "phase_angle": 16.957, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.841, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 218.958, 177.058, 154.939 ], "x_axis": [ -0.765, 0.360, -0.534 ], "y_axis": [ 0.617, 0.173, -0.768 ], "z_axis": [ -0.184, -0.917, -0.354 ], "quaternion": [ 0.115, 0.322, 0.757, -0.556 ] } }, { "index": 106, "index_chain": 106, "chain_name": "2", "nt_resnum": 106, "nt_name": "C", "nt_code": "C", "nt_id": "///2/106", "linked_nts": [ "///2/105", "///2/107" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -69.879, "beta": 169.690, "gamma": 62.044, "delta": 82.488, "epsilon": -147.961, "zeta": -79.962, "epsilon_zeta": -67.999, "bb_type": "BI", "chi": -161.518, "glyco_bond": "anti", "C5prime_xyz": [ -1.218, 8.733, 0.633 ], "P_xyz": [ 1.398, 8.968, 0.586 ], "form": "A", "ssZp": 4.435, "Dp": 4.617, "splay_angle": 24.547, "splay_distance": 3.832, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 164.379, "theta": -148.677, "eta_prime": -165.530, "theta_prime": -149.161, "eta_base": -91.221, "theta_base": -128.334, "v0": 2.706, "v1": -24.028, "v2": 35.056, "v3": -34.455, "v4": 20.027, "amplitude": 36.196, "phase_angle": 14.423, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.722, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 216.198, 175.636, 150.110 ], "x_axis": [ 0.219, 0.333, -0.917 ], "y_axis": [ 0.949, -0.292, 0.121 ], "z_axis": [ -0.227, -0.897, -0.380 ], "quaternion": [ 0.370, 0.688, 0.466, -0.416 ] } }, { "index": 107, "index_chain": 107, "chain_name": "2", "nt_resnum": 107, "nt_name": "A", "nt_code": "A", "nt_id": "///2/107", "linked_nts": [ "///2/106", "///2/108" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.567, "beta": 172.376, "gamma": 49.860, "delta": 81.982, "epsilon": -130.734, "zeta": -91.426, "epsilon_zeta": -39.309, "bb_type": "--", "chi": -163.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.185, 8.627, 0.740 ], "P_xyz": [ 1.405, 8.856, 1.069 ], "form": "A", "ssZp": 4.468, "Dp": 4.739, "splay_angle": 21.523, "splay_distance": 3.392, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 171.690, "theta": -148.612, "eta_prime": -179.856, "theta_prime": -145.986, "eta_base": -148.009, "theta_base": -130.552, "v0": 4.335, "v1": -25.762, "v2": 36.224, "v3": -34.726, "v4": 19.182, "amplitude": 37.041, "phase_angle": 12.056, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.923, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 214.348, 172.799, 148.318 ], "x_axis": [ 0.707, 0.314, -0.634 ], "y_axis": [ 0.702, -0.424, 0.572 ], "z_axis": [ -0.089, -0.850, -0.520 ], "quaternion": [ 0.437, 0.814, 0.312, -0.222 ] } }, { "index": 108, "index_chain": 108, "chain_name": "2", "nt_resnum": 108, "nt_name": "G", "nt_code": "G", "nt_id": "///2/108", "linked_nts": [ "///2/107", "///2/109" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": -64.200, "beta": 159.229, "gamma": 55.356, "delta": 81.918, "epsilon": -144.475, "zeta": -67.198, "epsilon_zeta": -77.277, "bb_type": "BI", "chi": -162.963, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.747, 0.705 ], "P_xyz": [ 1.190, 9.053, 0.668 ], "form": "A", "ssZp": 4.458, "Dp": 4.630, "splay_angle": 21.869, "splay_distance": 3.469, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 161.978, "theta": -133.201, "eta_prime": 172.836, "theta_prime": -132.823, "eta_base": -160.282, "theta_base": -91.132, "v0": 1.750, "v1": -23.505, "v2": 35.063, "v3": -35.040, "v4": 20.998, "amplitude": 36.462, "phase_angle": 15.921, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.601, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 213.254, 170.713, 145.877 ], "x_axis": [ 0.930, 0.354, -0.099 ], "y_axis": [ 0.312, -0.617, 0.722 ], "z_axis": [ 0.195, -0.702, -0.685 ], "quaternion": [ 0.396, 0.899, 0.185, 0.027 ] } }, { "index": 109, "index_chain": 109, "chain_name": "2", "nt_resnum": 109, "nt_name": "U", "nt_code": "U", "nt_id": "///2/109", "linked_nts": [ "///2/108", "///2/110" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -66.061, "beta": 173.380, "gamma": 55.110, "delta": 83.258, "epsilon": -166.862, "zeta": -83.204, "epsilon_zeta": -83.658, "bb_type": "BI", "chi": -146.459, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.747, -0.268 ], "P_xyz": [ 1.158, 9.168, -0.407 ], "form": ".", "ssZp": 3.990, "Dp": 4.420, "splay_angle": 28.859, "splay_distance": 4.684, "splay_ratio": 0.250, "d22": 4.603, "d64": 4.825, "eta": 164.396, "theta": -129.696, "eta_prime": -173.902, "theta_prime": -134.612, "eta_base": -113.362, "theta_base": -106.227, "v0": 1.475, "v1": -22.423, "v2": 33.640, "v3": -33.756, "v4": 20.385, "amplitude": 35.046, "phase_angle": 16.283, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.973, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 215.774, 169.766, 143.689 ], "x_axis": [ 0.876, -0.119, 0.468 ], "y_axis": [ -0.335, -0.847, 0.412 ], "z_axis": [ 0.348, -0.518, -0.782 ], "quaternion": [ 0.248, 0.936, -0.121, 0.218 ] } }, { "index": 110, "index_chain": 110, "chain_name": "2", "nt_resnum": 110, "nt_name": "U", "nt_code": "U", "nt_id": "///2/110", "linked_nts": [ "///2/109", "///2/111" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 166.243, "beta": -141.659, "gamma": 160.967, "delta": 81.813, "epsilon": -128.613, "zeta": -85.391, "epsilon_zeta": -43.222, "bb_type": "--", "chi": -163.788, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.655, 0.765 ], "P_xyz": [ 0.513, 9.468, -0.909 ], "form": "A", "ssZp": 4.461, "Dp": 4.727, "splay_angle": 20.058, "splay_distance": 3.216, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 167.237, "theta": -152.650, "eta_prime": -172.646, "theta_prime": -155.229, "eta_base": -126.609, "theta_base": -147.003, "v0": 3.400, "v1": -24.939, "v2": 35.786, "v3": -34.823, "v4": 19.832, "amplitude": 36.794, "phase_angle": 13.437, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.345, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 219.231, 167.548, 141.436 ], "x_axis": [ 0.510, -0.585, 0.630 ], "y_axis": [ -0.751, -0.660, -0.004 ], "z_axis": [ 0.419, -0.471, -0.776 ], "quaternion": [ 0.136, 0.858, -0.389, 0.306 ] } }, { "index": 111, "index_chain": 111, "chain_name": "2", "nt_resnum": 111, "nt_name": "A", "nt_code": "A", "nt_id": "///2/111", "linked_nts": [ "///2/110", "///2/112" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -72.160, "beta": 178.073, "gamma": 47.616, "delta": 82.218, "epsilon": -160.369, "zeta": -83.029, "epsilon_zeta": -77.340, "bb_type": "BI", "chi": -142.132, "glyco_bond": "anti", "C5prime_xyz": [ -1.402, 8.711, -0.528 ], "P_xyz": [ 1.162, 9.255, -0.585 ], "form": ".", "ssZp": 3.848, "Dp": 4.510, "splay_angle": 24.461, "splay_distance": 4.001, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 156.255, "theta": -162.386, "eta_prime": 167.084, "theta_prime": -162.755, "eta_base": -171.954, "theta_base": -161.647, "v0": 1.910, "v1": -23.329, "v2": 34.679, "v3": -34.525, "v4": 20.580, "amplitude": 36.011, "phase_angle": 15.633, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.674, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 221.604, 166.881, 139.372 ], "x_axis": [ -0.142, -0.561, 0.816 ], "y_axis": [ -0.743, -0.484, -0.462 ], "z_axis": [ 0.654, -0.672, -0.348 ], "quaternion": [ 0.081, 0.650, -0.501, 0.565 ] } }, { "index": 112, "index_chain": 112, "chain_name": "2", "nt_resnum": 112, "nt_name": "U", "nt_code": "U", "nt_id": "///2/112", "linked_nts": [ "///2/111", "///2/113" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,splayed-apart", "alpha": -58.139, "beta": 163.063, "gamma": 59.739, "delta": 82.999, "epsilon": -89.125, "zeta": 117.115, "epsilon_zeta": 153.760, "bb_type": "--", "chi": -145.943, "glyco_bond": "anti", "C5prime_xyz": [ -1.844, 8.834, -0.352 ], "P_xyz": [ 0.644, 9.482, -0.875 ], "form": ".", "ssZp": 3.084, "Dp": 4.401, "splay_angle": 144.712, "splay_distance": 18.769, "splay_ratio": 0.953, "d22": null, "d64": null, "eta": -167.785, "theta": 111.537, "eta_prime": -165.761, "theta_prime": 71.616, "eta_base": -163.828, "theta_base": 14.095, "v0": -3.849, "v1": -18.123, "v2": 31.782, "v3": -34.892, "v4": 24.465, "amplitude": 34.996, "phase_angle": 24.745, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.773, "filter_rmsd": 0.099, "frame": { "rmsd": 0.007, "origin": [ 225.104, 165.906, 137.695 ], "x_axis": [ -0.306, -0.612, 0.729 ], "y_axis": [ -0.615, -0.457, -0.642 ], "z_axis": [ 0.726, -0.645, -0.237 ], "quaternion": [ 0.001, 0.589, -0.521, 0.618 ] } }, { "index": 113, "index_chain": 113, "chain_name": "2", "nt_resnum": 113, "nt_name": "G", "nt_code": "G", "nt_id": "///2/113", "linked_nts": [ "///2/112", "///2/114" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,bulge,splayed-apart", "alpha": 53.018, "beta": -157.815, "gamma": 61.095, "delta": 147.300, "epsilon": -114.527, "zeta": 65.280, "epsilon_zeta": 180.193, "bb_type": "--", "chi": -112.155, "glyco_bond": "anti", "C5prime_xyz": [ -2.031, 8.403, -1.591 ], "P_xyz": [ 0.266, 9.489, -0.934 ], "form": ".", "ssZp": 1.142, "Dp": 1.231, "splay_angle": 135.941, "splay_distance": 17.557, "splay_ratio": 0.927, "d22": null, "d64": null, "eta": 15.412, "theta": 79.713, "eta_prime": 35.921, "theta_prime": 13.862, "eta_base": 77.176, "theta_base": -51.821, "v0": -20.877, "v1": 35.281, "v2": -35.411, "v3": 24.306, "v4": -2.351, "amplitude": 36.685, "phase_angle": 164.854, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 215.210, 158.585, 123.526 ], "x_axis": [ -0.028, -0.848, 0.529 ], "y_axis": [ 0.701, 0.361, 0.615 ], "z_axis": [ -0.713, 0.388, 0.584 ], "quaternion": [ 0.692, 0.082, -0.448, -0.559 ] } }, { "index": 114, "index_chain": 114, "chain_name": "2", "nt_resnum": 114, "nt_name": "G", "nt_code": "G", "nt_id": "///2/114", "linked_nts": [ "///2/113", "///2/115" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,bulge,splayed-apart", "alpha": 132.043, "beta": 140.875, "gamma": 49.040, "delta": 145.761, "epsilon": -150.907, "zeta": -126.131, "epsilon_zeta": -24.777, "bb_type": "--", "chi": -108.721, "glyco_bond": "anti", "C5prime_xyz": [ -2.109, 8.337, -1.770 ], "P_xyz": [ 0.507, 8.570, -1.760 ], "form": ".", "ssZp": 1.887, "Dp": 1.918, "splay_angle": 51.041, "splay_distance": 8.764, "splay_ratio": 0.432, "d22": null, "d64": null, "eta": -6.519, "theta": -108.612, "eta_prime": 58.572, "theta_prime": -147.661, "eta_base": 114.660, "theta_base": -125.518, "v0": -21.570, "v1": 35.402, "v2": -34.948, "v3": 23.394, "v4": -1.348, "amplitude": 36.484, "phase_angle": 163.320, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 222.790, 170.677, 133.752 ], "x_axis": [ -0.864, -0.334, 0.378 ], "y_axis": [ -0.133, -0.571, -0.810 ], "z_axis": [ 0.486, -0.750, 0.449 ], "quaternion": [ -0.059, 0.254, -0.459, 0.849 ] } }, { "index": 115, "index_chain": 115, "chain_name": "2", "nt_resnum": 115, "nt_name": "U", "nt_code": "U", "nt_id": "///2/115", "linked_nts": [ "///2/114", "///2/116" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": 157.296, "beta": 179.360, "gamma": 167.016, "delta": 81.886, "epsilon": -155.556, "zeta": -77.851, "epsilon_zeta": -77.705, "bb_type": "BI", "chi": -163.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.694, 0.728 ], "P_xyz": [ -0.090, 10.426, -0.742 ], "form": "A", "ssZp": 4.462, "Dp": 4.567, "splay_angle": 24.540, "splay_distance": 3.842, "splay_ratio": 0.213, "d22": 4.692, "d64": 4.773, "eta": 155.061, "theta": 177.262, "eta_prime": 163.532, "theta_prime": -177.640, "eta_base": -159.138, "theta_base": -155.463, "v0": 2.159, "v1": -23.834, "v2": 35.197, "v3": -34.924, "v4": 20.668, "amplitude": 36.487, "phase_angle": 15.282, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 228.194, 164.242, 136.239 ], "x_axis": [ -0.861, -0.508, -0.032 ], "y_axis": [ -0.054, 0.153, -0.987 ], "z_axis": [ 0.506, -0.848, -0.159 ], "quaternion": [ 0.183, -0.190, 0.737, -0.622 ] } }, { "index": 116, "index_chain": 116, "chain_name": "2", "nt_resnum": 116, "nt_name": "U", "nt_code": "U", "nt_id": "///2/116", "linked_nts": [ "///2/115", "///2/117" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -64.415, "beta": 171.174, "gamma": 58.977, "delta": 82.743, "epsilon": -143.435, "zeta": -68.865, "epsilon_zeta": -74.571, "bb_type": "BI", "chi": -162.420, "glyco_bond": "anti", "C5prime_xyz": [ -1.393, 8.699, 0.677 ], "P_xyz": [ 1.203, 9.066, 0.810 ], "form": ".", "ssZp": 4.435, "Dp": 4.625, "splay_angle": 28.623, "splay_distance": 4.478, "splay_ratio": 0.247, "d22": 4.105, "d64": 4.194, "eta": 174.521, "theta": -134.540, "eta_prime": -175.558, "theta_prime": -132.172, "eta_base": -147.529, "theta_base": -90.802, "v0": 2.104, "v1": -23.402, "v2": 34.559, "v3": -34.314, "v4": 20.327, "amplitude": 35.833, "phase_angle": 15.319, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.904, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 230.193, 161.164, 137.376 ], "x_axis": [ -0.807, -0.359, -0.468 ], "y_axis": [ 0.353, 0.342, -0.871 ], "z_axis": [ 0.473, -0.868, -0.149 ], "quaternion": [ 0.310, -0.002, 0.758, -0.574 ] } }, { "index": 117, "index_chain": 117, "chain_name": "2", "nt_resnum": 117, "nt_name": "C", "nt_code": "C", "nt_id": "///2/117", "linked_nts": [ "///2/116", "///2/118" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": -63.429, "beta": 164.636, "gamma": 61.333, "delta": 82.613, "epsilon": -133.728, "zeta": -177.662, "epsilon_zeta": 43.934, "bb_type": "BII", "chi": -160.782, "glyco_bond": "anti", "C5prime_xyz": [ -1.264, 8.746, 0.580 ], "P_xyz": [ 1.345, 8.991, 0.403 ], "form": ".", "ssZp": 4.383, "Dp": 4.682, "splay_angle": 86.264, "splay_distance": 12.178, "splay_ratio": 0.684, "d22": 8.279, "d64": 9.786, "eta": 171.699, "theta": 118.918, "eta_prime": -167.959, "theta_prime": 127.776, "eta_base": -109.370, "theta_base": 146.986, "v0": 2.507, "v1": -23.864, "v2": 34.936, "v3": -34.459, "v4": 20.170, "amplitude": 36.123, "phase_angle": 14.725, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.863, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 229.877, 157.101, 135.522 ], "x_axis": [ -0.302, 0.018, -0.953 ], "y_axis": [ 0.850, 0.457, -0.261 ], "z_axis": [ 0.431, -0.889, -0.154 ], "quaternion": [ 0.500, 0.314, 0.692, -0.416 ] } }, { "index": 118, "index_chain": 118, "chain_name": "2", "nt_resnum": 118, "nt_name": "C", "nt_code": "C", "nt_id": "///2/118", "linked_nts": [ "///2/117", "///2/119" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-donor,splayed-apart", "alpha": -67.224, "beta": 152.658, "gamma": 39.536, "delta": 80.176, "epsilon": -138.120, "zeta": -47.411, "epsilon_zeta": -90.708, "bb_type": "BI", "chi": 179.073, "glyco_bond": "anti", "C5prime_xyz": [ -1.230, 8.364, 1.745 ], "P_xyz": [ 1.320, 8.208, 2.343 ], "form": ".", "ssZp": 4.769, "Dp": 4.750, "splay_angle": 38.882, "splay_distance": 5.805, "splay_ratio": 0.335, "d22": 3.354, "d64": 4.125, "eta": 175.985, "theta": -110.131, "eta_prime": 164.234, "theta_prime": -106.608, "eta_base": 149.430, "theta_base": -62.630, "v0": 5.412, "v1": -27.610, "v2": 38.121, "v3": -35.978, "v4": 19.271, "amplitude": 38.799, "phase_angle": 10.727, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.802, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 238.441, 154.272, 143.705 ], "x_axis": [ -0.975, 0.046, -0.215 ], "y_axis": [ 0.207, 0.522, -0.827 ], "z_axis": [ 0.074, -0.852, -0.519 ], "quaternion": [ 0.083, 0.073, 0.868, -0.483 ] } }, { "index": 119, "index_chain": 119, "chain_name": "2", "nt_resnum": 119, "nt_name": "U", "nt_code": "U", "nt_id": "///2/119", "linked_nts": [ "///2/118", "///2/120" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -76.947, "beta": 177.751, "gamma": 62.697, "delta": 81.553, "epsilon": -148.224, "zeta": -67.322, "epsilon_zeta": -80.902, "bb_type": "BI", "chi": -179.210, "glyco_bond": "anti", "C5prime_xyz": [ -1.425, 8.408, 1.642 ], "P_xyz": [ 1.117, 8.629, 2.265 ], "form": "A", "ssZp": 4.632, "Dp": 4.642, "splay_angle": 24.649, "splay_distance": 3.867, "splay_ratio": 0.219, "d22": 4.461, "d64": 4.495, "eta": 162.004, "theta": -138.907, "eta_prime": -166.934, "theta_prime": -137.538, "eta_base": -89.548, "theta_base": -111.250, "v0": 3.609, "v1": -25.345, "v2": 36.231, "v3": -35.107, "v4": 19.853, "amplitude": 37.204, "phase_angle": 13.128, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.518, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 234.854, 151.695, 139.938 ], "x_axis": [ -0.258, 0.532, -0.806 ], "y_axis": [ 0.944, 0.315, -0.094 ], "z_axis": [ 0.204, -0.786, -0.584 ], "quaternion": [ 0.344, 0.503, 0.735, -0.300 ] } }, { "index": 120, "index_chain": 120, "chain_name": "2", "nt_resnum": 120, "nt_name": "U", "nt_code": "U", "nt_id": "///2/120", "linked_nts": [ "///2/119", "///2/121" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -74.674, "beta": -174.523, "gamma": 56.166, "delta": 82.702, "epsilon": -150.478, "zeta": -62.953, "epsilon_zeta": -87.525, "bb_type": "BI", "chi": -167.957, "glyco_bond": "anti", "C5prime_xyz": [ -1.463, 8.652, 0.994 ], "P_xyz": [ 1.020, 9.049, 1.749 ], "form": "A", "ssZp": 4.489, "Dp": 4.565, "splay_angle": 22.583, "splay_distance": 3.589, "splay_ratio": 0.198, "d22": 3.935, "d64": 3.799, "eta": 168.414, "theta": -136.312, "eta_prime": -177.648, "theta_prime": -134.558, "eta_base": -135.822, "theta_base": -94.053, "v0": 1.582, "v1": -22.999, "v2": 34.423, "v3": -34.474, "v4": 20.735, "amplitude": 35.832, "phase_angle": 16.125, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.872, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 233.464, 149.075, 137.456 ], "x_axis": [ 0.345, 0.699, -0.627 ], "y_axis": [ 0.900, -0.057, 0.432 ], "z_axis": [ 0.266, -0.713, -0.649 ], "quaternion": [ 0.400, 0.716, 0.558, -0.126 ] } }, { "index": 121, "index_chain": 121, "chain_name": "2", "nt_resnum": 121, "nt_name": "U", "nt_code": "U", "nt_id": "///2/121", "linked_nts": [ "///2/120", "///2/122" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -72.141, "beta": 176.320, "gamma": 54.942, "delta": 80.952, "epsilon": -135.519, "zeta": -82.972, "epsilon_zeta": -52.547, "bb_type": "BI", "chi": -161.706, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.732, 0.630 ], "P_xyz": [ 1.117, 9.213, 0.955 ], "form": "A", "ssZp": 4.406, "Dp": 4.671, "splay_angle": 22.282, "splay_distance": 3.535, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 165.847, "theta": -145.357, "eta_prime": -177.401, "theta_prime": -143.812, "eta_base": -120.946, "theta_base": -116.633, "v0": 1.545, "v1": -23.603, "v2": 35.452, "v3": -35.563, "v4": 21.455, "amplitude": 36.933, "phase_angle": 16.282, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.917, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 234.200, 148.283, 134.034 ], "x_axis": [ 0.843, 0.524, -0.121 ], "y_axis": [ 0.449, -0.562, 0.695 ], "z_axis": [ 0.296, -0.640, -0.709 ], "quaternion": [ 0.378, 0.882, 0.276, 0.050 ] } }, { "index": 122, "index_chain": 122, "chain_name": "2", "nt_resnum": 122, "nt_name": "G", "nt_code": "G", "nt_id": "///2/122", "linked_nts": [ "///2/121", "///2/123" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -69.341, "beta": 167.286, "gamma": 52.613, "delta": 81.669, "epsilon": -156.238, "zeta": -75.949, "epsilon_zeta": -80.289, "bb_type": "BI", "chi": -167.992, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.685, 0.998 ], "P_xyz": [ 1.147, 9.033, 1.357 ], "form": "A", "ssZp": 4.522, "Dp": 4.564, "splay_angle": 22.641, "splay_distance": 3.619, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 156.650, "theta": -151.993, "eta_prime": 169.885, "theta_prime": -152.530, "eta_base": -148.314, "theta_base": -139.484, "v0": 1.930, "v1": -23.648, "v2": 35.141, "v3": -34.997, "v4": 20.860, "amplitude": 36.492, "phase_angle": 15.640, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.829, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 235.573, 147.189, 130.965 ], "x_axis": [ 0.723, 0.364, 0.587 ], "y_axis": [ -0.097, -0.788, 0.608 ], "z_axis": [ 0.684, -0.497, -0.534 ], "quaternion": [ 0.317, 0.872, 0.076, 0.364 ] } }, { "index": 123, "index_chain": 123, "chain_name": "2", "nt_resnum": 123, "nt_name": "G", "nt_code": "G", "nt_id": "///2/123", "linked_nts": [ "///2/122", "///2/124" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -62.908, "beta": 175.570, "gamma": 53.380, "delta": 82.347, "epsilon": -142.825, "zeta": -69.501, "epsilon_zeta": -73.324, "bb_type": "BI", "chi": -162.705, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.790, 0.693 ], "P_xyz": [ 1.075, 9.263, 1.182 ], "form": ".", "ssZp": 4.391, "Dp": 4.578, "splay_angle": 28.664, "splay_distance": 4.516, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 174.171, "theta": -135.777, "eta_prime": -177.262, "theta_prime": -131.820, "eta_base": -153.514, "theta_base": -88.885, "v0": 0.265, "v1": -21.826, "v2": 33.832, "v3": -34.613, "v4": 21.677, "amplitude": 35.610, "phase_angle": 18.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 237.486, 147.262, 127.895 ], "x_axis": [ 0.559, 0.015, 0.829 ], "y_axis": [ -0.365, -0.894, 0.262 ], "z_axis": [ 0.745, -0.449, -0.494 ], "quaternion": [ 0.207, 0.858, -0.102, 0.459 ] } }, { "index": 124, "index_chain": 124, "chain_name": "2", "nt_resnum": 124, "nt_name": "U", "nt_code": "U", "nt_id": "///2/124", "linked_nts": [ "///2/123", "///2/125" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -60.724, "beta": 164.686, "gamma": 56.694, "delta": 80.841, "epsilon": -130.347, "zeta": -75.088, "epsilon_zeta": -55.259, "bb_type": "BI", "chi": -159.952, "glyco_bond": "anti", "C5prime_xyz": [ -1.352, 8.701, 0.528 ], "P_xyz": [ 1.245, 9.022, 0.381 ], "form": ".", "ssZp": 4.361, "Dp": 4.734, "splay_angle": 29.582, "splay_distance": 4.719, "splay_ratio": 0.256, "d22": 3.967, "d64": 4.001, "eta": 170.280, "theta": -130.743, "eta_prime": -170.073, "theta_prime": -128.306, "eta_base": -111.484, "theta_base": -93.355, "v0": 3.210, "v1": -25.203, "v2": 36.478, "v3": -35.620, "v4": 20.439, "amplitude": 37.568, "phase_angle": 13.834, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.936, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 241.599, 145.412, 128.129 ], "x_axis": [ 0.123, -0.636, 0.762 ], "y_axis": [ -0.637, -0.639, -0.431 ], "z_axis": [ 0.761, -0.432, -0.483 ], "quaternion": [ 0.000, 0.749, -0.425, 0.508 ] } }, { "index": 125, "index_chain": 125, "chain_name": "2", "nt_resnum": 125, "nt_name": "C", "nt_code": "C", "nt_id": "///2/125", "linked_nts": [ "///2/124", "///2/126" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -54.945, "beta": 169.256, "gamma": 49.183, "delta": 79.585, "epsilon": -153.775, "zeta": 154.422, "epsilon_zeta": 51.803, "bb_type": "--", "chi": -156.612, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.816, 0.310 ], "P_xyz": [ 1.198, 9.290, 0.370 ], "form": ".", "ssZp": 4.349, "Dp": 4.605, "splay_angle": 126.446, "splay_distance": 17.190, "splay_ratio": 0.893, "d22": null, "d64": null, "eta": 164.814, "theta": 80.392, "eta_prime": -175.967, "theta_prime": 50.302, "eta_base": -123.592, "theta_base": -123.735, "v0": 1.359, "v1": -24.018, "v2": 36.308, "v3": -36.531, "v4": 22.177, "amplitude": 37.888, "phase_angle": 16.609, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.757, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 244.704, 141.904, 128.698 ], "x_axis": [ -0.579, -0.729, 0.364 ], "y_axis": [ -0.480, -0.057, -0.876 ], "z_axis": [ 0.659, -0.682, -0.317 ], "quaternion": [ 0.109, -0.446, 0.678, -0.574 ] } }, { "index": 126, "index_chain": 126, "chain_name": "2", "nt_resnum": 126, "nt_name": "G", "nt_code": "G", "nt_id": "///2/126", "linked_nts": [ "///2/125", "///2/127" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-canonical,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -176.109, "beta": -164.932, "gamma": -72.511, "delta": 146.859, "epsilon": -111.288, "zeta": -69.767, "epsilon_zeta": -41.521, "bb_type": "--", "chi": -58.930, "glyco_bond": "--", "C5prime_xyz": [ -3.521, 6.513, -3.074 ], "P_xyz": [ -4.357, 7.656, -5.282 ], "form": ".", "ssZp": 0.435, "Dp": 1.198, "splay_angle": 135.854, "splay_distance": 18.330, "splay_ratio": 0.927, "d22": null, "d64": null, "eta": 9.937, "theta": -107.586, "eta_prime": 25.165, "theta_prime": -102.138, "eta_base": 178.119, "theta_base": -55.563, "v0": -22.386, "v1": 36.312, "v2": -35.613, "v3": 23.609, "v4": -0.964, "amplitude": 37.299, "phase_angle": 162.706, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 251.069, 133.005, 115.439 ], "x_axis": [ -0.352, -0.927, 0.129 ], "y_axis": [ -0.936, 0.351, -0.029 ], "z_axis": [ -0.018, -0.131, -0.991 ], "quaternion": [ -0.045, -0.567, 0.821, -0.049 ] } }, { "index": 127, "index_chain": 127, "chain_name": "2", "nt_resnum": 127, "nt_name": "C", "nt_code": "C", "nt_id": "///2/127", "linked_nts": [ "///2/126", "///2/128" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart", "alpha": -79.293, "beta": -117.818, "gamma": 57.905, "delta": 146.307, "epsilon": -91.185, "zeta": -83.313, "epsilon_zeta": -7.872, "bb_type": "--", "chi": -139.450, "glyco_bond": "anti", "C5prime_xyz": [ -1.679, 8.763, -0.178 ], "P_xyz": [ -0.401, 9.148, 2.083 ], "form": ".", "ssZp": 0.737, "Dp": 0.764, "splay_angle": 77.763, "splay_distance": 12.362, "splay_ratio": 0.628, "d22": 6.693, "d64": 7.199, "eta": -145.757, "theta": -44.569, "eta_prime": -108.740, "theta_prime": -64.220, "eta_base": -133.549, "theta_base": -45.046, "v0": -20.838, "v1": 34.952, "v2": -34.933, "v3": 23.818, "v4": -2.065, "amplitude": 36.259, "phase_angle": 164.455, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.522, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 236.084, 143.427, 117.123 ], "x_axis": [ 0.160, -0.411, 0.897 ], "y_axis": [ 0.814, -0.459, -0.356 ], "z_axis": [ 0.558, 0.788, 0.261 ], "quaternion": [ -0.491, 0.583, 0.173, 0.625 ] } }, { "index": 128, "index_chain": 128, "chain_name": "2", "nt_resnum": 128, "nt_name": "U", "nt_code": "U", "nt_id": "///2/128", "linked_nts": [ "///2/127", "///2/129" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart", "alpha": -92.288, "beta": -178.616, "gamma": 55.442, "delta": 146.577, "epsilon": -98.984, "zeta": -101.387, "epsilon_zeta": 2.403, "bb_type": "--", "chi": -142.266, "glyco_bond": "anti", "C5prime_xyz": [ -1.911, 8.739, -0.044 ], "P_xyz": [ 0.192, 9.409, 1.378 ], "form": ".", "ssZp": 0.827, "Dp": 0.869, "splay_angle": 90.492, "splay_distance": 13.644, "splay_ratio": 0.711, "d22": 7.162, "d64": 8.050, "eta": 148.269, "theta": -39.858, "eta_prime": -158.127, "theta_prime": -68.095, "eta_base": -134.647, "theta_base": -42.954, "v0": -22.374, "v1": 36.326, "v2": -35.641, "v3": 23.682, "v4": -1.029, "amplitude": 37.313, "phase_angle": 162.784, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.360, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 247.895, 146.713, 115.532 ], "x_axis": [ -0.363, -0.636, 0.681 ], "y_axis": [ -0.689, -0.310, -0.656 ], "z_axis": [ 0.628, -0.707, -0.325 ], "quaternion": [ -0.023, -0.564, 0.587, -0.580 ] } }, { "index": 129, "index_chain": 129, "chain_name": "2", "nt_resnum": 129, "nt_name": "C", "nt_code": "C", "nt_id": "///2/129", "linked_nts": [ "///2/128", "///2/130" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,phosphate,splayed-apart", "alpha": 165.228, "beta": -150.713, "gamma": 158.535, "delta": 148.394, "epsilon": -132.994, "zeta": 128.509, "epsilon_zeta": 98.497, "bb_type": "--", "chi": -168.637, "glyco_bond": "anti", "C5prime_xyz": [ -1.969, 8.471, 1.428 ], "P_xyz": [ 0.580, 9.055, 1.610 ], "form": "Z", "ssZp": 1.103, "Dp": 1.601, "splay_angle": 39.554, "splay_distance": 6.108, "splay_ratio": 0.355, "d22": null, "d64": null, "eta": 145.234, "theta": 120.757, "eta_prime": -151.025, "theta_prime": 76.657, "eta_base": -124.021, "theta_base": 66.458, "v0": -20.626, "v1": 35.667, "v2": -36.214, "v3": 25.221, "v4": -3.058, "amplitude": 37.341, "phase_angle": 165.891, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 245.715, 138.530, 104.835 ], "x_axis": [ -0.643, -0.056, 0.764 ], "y_axis": [ 0.132, 0.974, 0.183 ], "z_axis": [ -0.754, 0.218, -0.619 ], "quaternion": [ -0.422, 0.021, 0.899, 0.111 ] } }, { "index": 130, "index_chain": 130, "chain_name": "2", "nt_resnum": 130, "nt_name": "G", "nt_code": "G", "nt_id": "///2/130", "linked_nts": [ "///2/129", null ], "nt_type": "RNA", "dbn": "(", "is_broken": true, "summary": "break,syn,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,cap-acceptor", "alpha": 45.746, "beta": -131.344, "gamma": -158.936, "delta": 145.010, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": 76.798, "glyco_bond": "syn", "C5prime_xyz": [ -5.146, 4.779, 1.965 ], "P_xyz": [ -4.796, 3.963, 4.436 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -24.015, "v1": 37.044, "v2": -35.174, "v3": 22.270, "v4": 0.892, "amplitude": 37.463, "phase_angle": 159.869, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 249.789, 142.400, 107.228 ], "x_axis": [ -0.583, 0.195, 0.789 ], "y_axis": [ 0.221, 0.972, -0.077 ], "z_axis": [ -0.782, 0.129, -0.610 ], "quaternion": [ -0.441, 0.117, 0.889, 0.015 ] } }, { "index": 131, "index_chain": 131, "chain_name": "2", "nt_resnum": 141, "nt_name": "A", "nt_code": "A", "nt_id": "///2/141", "linked_nts": [ null, "///2/142" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart", "alpha": null, "beta": -128.625, "gamma": 174.348, "delta": 148.645, "epsilon": -131.140, "zeta": 114.173, "epsilon_zeta": 114.686, "bb_type": "--", "chi": -130.427, "glyco_bond": "anti", "C5prime_xyz": [ -1.842, 8.642, -0.613 ], "P_xyz": [ 0.338, 8.700, -2.075 ], "form": ".", "ssZp": 1.530, "Dp": 1.552, "splay_angle": 119.754, "splay_distance": 18.398, "splay_ratio": 0.866, "d22": null, "d64": null, "eta": null, "theta": 122.504, "eta_prime": null, "theta_prime": 91.575, "eta_base": null, "theta_base": 108.403, "v0": -20.792, "v1": 35.699, "v2": -36.118, "v3": 25.072, "v4": -2.887, "amplitude": 37.289, "phase_angle": 165.605, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 260.816, 145.031, 118.946 ], "x_axis": [ 0.111, 0.915, -0.387 ], "y_axis": [ 0.676, -0.355, -0.645 ], "z_axis": [ -0.728, -0.191, -0.658 ], "quaternion": [ -0.156, 0.729, 0.546, -0.383 ] } }, { "index": 132, "index_chain": 132, "chain_name": "2", "nt_resnum": 142, "nt_name": "C", "nt_code": "C", "nt_id": "///2/142", "linked_nts": [ "///2/141", "///2/143" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 116.848, "beta": -103.978, "gamma": -53.036, "delta": 147.148, "epsilon": -145.462, "zeta": 132.043, "epsilon_zeta": 82.495, "bb_type": "--", "chi": -123.227, "glyco_bond": "anti", "C5prime_xyz": [ -1.746, 8.596, -1.034 ], "P_xyz": [ -2.526, 11.048, -1.547 ], "form": ".", "ssZp": 1.833, "Dp": 1.828, "splay_angle": 88.469, "splay_distance": 13.469, "splay_ratio": 0.698, "d22": 9.169, "d64": 10.755, "eta": -0.721, "theta": 56.479, "eta_prime": -25.278, "theta_prime": 93.977, "eta_base": -51.580, "theta_base": 92.011, "v0": -19.948, "v1": 34.398, "v2": -34.933, "v3": 24.310, "v4": -2.932, "amplitude": 36.026, "phase_angle": 165.850, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 267.803, 128.396, 122.543 ], "x_axis": [ 0.042, -0.809, -0.587 ], "y_axis": [ -0.182, 0.571, -0.801 ], "z_axis": [ 0.982, 0.140, -0.123 ], "quaternion": [ 0.610, -0.385, 0.643, -0.257 ] } }, { "index": 133, "index_chain": 133, "chain_name": "2", "nt_resnum": 143, "nt_name": "U", "nt_code": "U", "nt_id": "///2/143", "linked_nts": [ "///2/142", "///2/144" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -149.570, "beta": -142.744, "gamma": 64.543, "delta": 146.751, "epsilon": -124.024, "zeta": 135.797, "epsilon_zeta": 100.180, "bb_type": "BII", "chi": -135.412, "glyco_bond": "anti", "C5prime_xyz": [ -1.857, 8.699, -0.400 ], "P_xyz": [ 0.025, 9.370, 1.302 ], "form": ".", "ssZp": 1.420, "Dp": 1.438, "splay_angle": 76.232, "splay_distance": 11.878, "splay_ratio": 0.618, "d22": 8.626, "d64": 10.208, "eta": 166.550, "theta": 128.037, "eta_prime": 150.816, "theta_prime": 122.761, "eta_base": 137.403, "theta_base": 144.921, "v0": -21.460, "v1": 35.664, "v2": -35.467, "v3": 24.009, "v4": -1.808, "amplitude": 36.897, "phase_angle": 163.996, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 261.163, 139.693, 125.659 ], "x_axis": [ -0.436, -0.878, -0.197 ], "y_axis": [ 0.637, -0.146, -0.757 ], "z_axis": [ 0.636, -0.456, 0.622 ], "quaternion": [ 0.510, -0.148, 0.409, -0.742 ] } }, { "index": 134, "index_chain": 134, "chain_name": "2", "nt_resnum": 144, "nt_name": "U", "nt_code": "U", "nt_id": "///2/144", "linked_nts": [ "///2/143", "///2/145" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate", "alpha": -88.554, "beta": 179.685, "gamma": 39.177, "delta": 81.506, "epsilon": -146.023, "zeta": -79.048, "epsilon_zeta": -66.974, "bb_type": "BI", "chi": -167.766, "glyco_bond": "anti", "C5prime_xyz": [ -1.405, 8.641, 0.994 ], "P_xyz": [ 0.977, 9.075, 2.004 ], "form": "A", "ssZp": 4.531, "Dp": 4.620, "splay_angle": 25.997, "splay_distance": 4.233, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": -177.428, "theta": -150.446, "eta_prime": 168.498, "theta_prime": -145.360, "eta_base": 167.796, "theta_base": -128.643, "v0": 2.219, "v1": -23.900, "v2": 35.312, "v3": -35.017, "v4": 20.682, "amplitude": 36.597, "phase_angle": 15.226, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.623, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 264.431, 150.914, 123.538 ], "x_axis": [ -0.460, -0.579, 0.673 ], "y_axis": [ 0.449, -0.805, -0.386 ], "z_axis": [ 0.766, 0.125, 0.631 ], "quaternion": [ -0.302, 0.423, -0.077, 0.851 ] } }, { "index": 135, "index_chain": 135, "chain_name": "2", "nt_resnum": 145, "nt_name": "G", "nt_code": "G", "nt_id": "///2/145", "linked_nts": [ "///2/144", "///2/146" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -56.659, "beta": 174.527, "gamma": 51.224, "delta": 81.446, "epsilon": -159.560, "zeta": -92.259, "epsilon_zeta": -67.301, "bb_type": "BI", "chi": -160.132, "glyco_bond": "anti", "C5prime_xyz": [ -1.718, 8.862, 0.521 ], "P_xyz": [ 0.750, 9.568, 1.050 ], "form": "A", "ssZp": 4.270, "Dp": 4.409, "splay_angle": 23.570, "splay_distance": 3.709, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 173.445, "theta": -168.783, "eta_prime": -174.993, "theta_prime": -160.265, "eta_base": -150.369, "theta_base": -148.612, "v0": -2.592, "v1": -19.423, "v2": 32.721, "v3": -35.180, "v4": 23.823, "amplitude": 35.474, "phase_angle": 22.722, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 266.175, 153.151, 126.681 ], "x_axis": [ -0.348, -0.875, 0.338 ], "y_axis": [ 0.603, -0.485, -0.633 ], "z_axis": [ 0.718, -0.016, 0.696 ], "quaternion": [ -0.465, 0.332, -0.204, 0.795 ] } }, { "index": 136, "index_chain": 136, "chain_name": "2", "nt_resnum": 146, "nt_name": "G", "nt_code": "G", "nt_id": "///2/146", "linked_nts": [ "///2/145", "///2/147" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -48.139, "beta": 164.131, "gamma": 65.702, "delta": 148.001, "epsilon": -163.196, "zeta": -106.194, "epsilon_zeta": -57.003, "bb_type": "BI", "chi": -132.544, "glyco_bond": "anti", "C5prime_xyz": [ -1.792, 8.717, -0.506 ], "P_xyz": [ 0.765, 9.024, 0.017 ], "form": ".", "ssZp": 2.044, "Dp": 2.093, "splay_angle": 18.836, "splay_distance": 3.407, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": 176.704, "theta": -89.620, "eta_prime": -148.868, "theta_prime": -140.692, "eta_base": -136.855, "theta_base": -113.228, "v0": -20.748, "v1": 35.640, "v2": -36.062, "v3": 24.960, "v4": -2.841, "amplitude": 37.239, "phase_angle": 165.556, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.556, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 267.986, 154.836, 129.444 ], "x_axis": [ -0.155, -0.987, 0.041 ], "y_axis": [ 0.770, -0.146, -0.621 ], "z_axis": [ 0.619, -0.064, 0.783 ], "quaternion": [ 0.609, -0.229, 0.237, -0.722 ] } }, { "index": 137, "index_chain": 137, "chain_name": "2", "nt_resnum": 147, "nt_name": "A", "nt_code": "A", "nt_id": "///2/147", "linked_nts": [ "///2/146", "///2/148" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": 137.906, "beta": -174.879, "gamma": 162.730, "delta": 80.646, "epsilon": -153.095, "zeta": -74.979, "epsilon_zeta": -78.116, "bb_type": "BI", "chi": -158.084, "glyco_bond": "anti", "C5prime_xyz": [ -1.658, 8.826, 0.383 ], "P_xyz": [ -0.319, 10.342, -1.292 ], "form": "A", "ssZp": 4.288, "Dp": 4.500, "splay_angle": 22.488, "splay_distance": 3.610, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 126.389, "theta": -174.142, "eta_prime": 145.581, "theta_prime": -170.434, "eta_base": -162.388, "theta_base": -137.817, "v0": -2.021, "v1": -20.360, "v2": 33.664, "v3": -35.773, "v4": 23.844, "amplitude": 36.237, "phase_angle": 21.723, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 268.827, 154.539, 132.732 ], "x_axis": [ 0.282, -0.897, -0.341 ], "y_axis": [ 0.737, 0.430, -0.521 ], "z_axis": [ 0.614, -0.104, 0.782 ], "quaternion": [ 0.790, -0.132, 0.302, -0.517 ] } }, { "index": 138, "index_chain": 138, "chain_name": "2", "nt_resnum": 148, "nt_name": "U", "nt_code": "U", "nt_id": "///2/148", "linked_nts": [ "///2/147", "///2/149" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.172, "beta": 167.481, "gamma": 54.540, "delta": 80.903, "epsilon": -158.502, "zeta": -91.392, "epsilon_zeta": -67.110, "bb_type": "BI", "chi": -153.939, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.805, 0.167 ], "P_xyz": [ 1.068, 9.298, 0.134 ], "form": ".", "ssZp": 4.210, "Dp": 4.500, "splay_angle": 44.833, "splay_distance": 6.804, "splay_ratio": 0.382, "d22": null, "d64": null, "eta": 169.699, "theta": -165.012, "eta_prime": -175.040, "theta_prime": -164.756, "eta_base": -131.935, "theta_base": -144.738, "v0": 0.266, "v1": -22.349, "v2": 34.724, "v3": -35.539, "v4": 22.251, "amplitude": 36.556, "phase_angle": 18.218, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.944, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 270.447, 152.926, 135.526 ], "x_axis": [ 0.627, -0.509, -0.590 ], "y_axis": [ 0.514, 0.839, -0.178 ], "z_axis": [ 0.586, -0.192, 0.788 ], "quaternion": [ 0.902, 0.004, 0.326, -0.284 ] } }, { "index": 139, "index_chain": 139, "chain_name": "2", "nt_resnum": 149, "nt_name": "A", "nt_code": "A", "nt_id": "///2/149", "linked_nts": [ "///2/148", "///2/150" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper", "alpha": -44.484, "beta": 156.472, "gamma": 58.180, "delta": 78.656, "epsilon": -122.577, "zeta": -74.215, "epsilon_zeta": -48.363, "bb_type": "--", "chi": 167.364, "glyco_bond": "anti", "C5prime_xyz": [ -1.658, 8.006, 2.307 ], "P_xyz": [ 0.909, 8.195, 2.758 ], "form": ".", "ssZp": 4.818, "Dp": 4.815, "splay_angle": 33.612, "splay_distance": 4.953, "splay_ratio": 0.292, "d22": null, "d64": null, "eta": -172.339, "theta": -125.121, "eta_prime": -166.582, "theta_prime": -122.913, "eta_base": -140.265, "theta_base": -82.945, "v0": 4.762, "v1": -27.610, "v2": 38.830, "v3": -37.062, "v4": 20.349, "amplitude": 39.673, "phase_angle": 11.833, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.463, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 273.059, 151.804, 141.709 ], "x_axis": [ 0.701, -0.246, -0.670 ], "y_axis": [ -0.092, 0.900, -0.426 ], "z_axis": [ 0.707, 0.361, 0.608 ], "quaternion": [ 0.896, -0.220, 0.384, -0.043 ] } }, { "index": 140, "index_chain": 140, "chain_name": "2", "nt_resnum": 150, "nt_name": "A", "nt_code": "A", "nt_id": "///2/150", "linked_nts": [ "///2/149", "///2/151" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper,cap-acceptor,phosphate", "alpha": -60.060, "beta": 169.489, "gamma": 52.429, "delta": 78.426, "epsilon": -128.934, "zeta": -51.625, "epsilon_zeta": -77.309, "bb_type": "BI", "chi": 175.654, "glyco_bond": "anti", "C5prime_xyz": [ -1.425, 8.227, 1.885 ], "P_xyz": [ 1.122, 8.429, 2.457 ], "form": ".", "ssZp": 4.842, "Dp": 4.811, "splay_angle": 43.255, "splay_distance": 6.402, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": 164.504, "theta": -110.957, "eta_prime": -176.734, "theta_prime": -105.037, "eta_base": -111.769, "theta_base": -58.719, "v0": 6.012, "v1": -28.836, "v2": 39.567, "v3": -37.111, "v4": 19.583, "amplitude": 40.198, "phase_angle": 10.171, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.616, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 277.936, 151.964, 142.557 ], "x_axis": [ 0.316, 0.561, -0.765 ], "y_axis": [ -0.741, 0.650, 0.170 ], "z_axis": [ 0.593, 0.514, 0.621 ], "quaternion": [ 0.804, -0.107, 0.422, 0.405 ] } }, { "index": 141, "index_chain": 141, "chain_name": "2", "nt_resnum": 151, "nt_name": "C", "nt_code": "C", "nt_id": "///2/151", "linked_nts": [ "///2/150", "///2/152" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor,phosphate", "alpha": -67.575, "beta": 178.859, "gamma": 58.955, "delta": 81.965, "epsilon": -148.852, "zeta": -65.231, "epsilon_zeta": -83.620, "bb_type": "BI", "chi": -174.515, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.573, 1.383 ], "P_xyz": [ 1.255, 8.745, 2.070 ], "form": "A", "ssZp": 4.579, "Dp": 4.605, "splay_angle": 23.553, "splay_distance": 3.756, "splay_ratio": 0.208, "d22": 4.373, "d64": 4.275, "eta": 165.618, "theta": -137.279, "eta_prime": -163.688, "theta_prime": -135.598, "eta_base": -87.293, "theta_base": -108.999, "v0": 2.660, "v1": -24.170, "v2": 35.304, "v3": -34.709, "v4": 20.224, "amplitude": 36.466, "phase_angle": 14.501, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.604, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 280.557, 157.682, 141.367 ], "x_axis": [ -0.639, 0.756, -0.143 ], "y_axis": [ -0.595, -0.368, 0.714 ], "z_axis": [ 0.487, 0.542, 0.685 ], "quaternion": [ 0.412, 0.105, 0.383, 0.820 ] } }, { "index": 142, "index_chain": 142, "chain_name": "2", "nt_resnum": 152, "nt_name": "U", "nt_code": "U", "nt_id": "///2/152", "linked_nts": [ "///2/151", "///2/153" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -70.539, "beta": -172.732, "gamma": 49.810, "delta": 82.743, "epsilon": -131.104, "zeta": -89.722, "epsilon_zeta": -41.382, "bb_type": "BI", "chi": -160.355, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.749, 0.564 ], "P_xyz": [ 1.080, 9.237, 1.360 ], "form": ".", "ssZp": 4.284, "Dp": 4.621, "splay_angle": 19.367, "splay_distance": 3.085, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 172.171, "theta": -145.699, "eta_prime": -175.679, "theta_prime": -140.174, "eta_base": -137.317, "theta_base": -93.647, "v0": 0.943, "v1": -22.106, "v2": 33.664, "v3": -34.050, "v4": 20.909, "amplitude": 35.224, "phase_angle": 17.119, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.884, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 282.458, 160.796, 142.263 ], "x_axis": [ -0.934, 0.292, 0.206 ], "y_axis": [ -0.083, -0.738, 0.670 ], "z_axis": [ 0.348, 0.609, 0.713 ], "quaternion": [ 0.102, 0.151, 0.348, 0.920 ] } }, { "index": 143, "index_chain": 143, "chain_name": "2", "nt_resnum": 153, "nt_name": "G", "nt_code": "G", "nt_id": "///2/153", "linked_nts": [ "///2/152", "///2/154" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -54.206, "beta": 149.894, "gamma": 51.124, "delta": 83.012, "epsilon": -169.933, "zeta": -87.601, "epsilon_zeta": -82.332, "bb_type": "BI", "chi": -152.764, "glyco_bond": "anti", "C5prime_xyz": [ -1.229, 8.711, 0.104 ], "P_xyz": [ 1.352, 8.660, -0.348 ], "form": ".", "ssZp": 4.236, "Dp": 4.483, "splay_angle": 25.525, "splay_distance": 4.280, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 155.590, "theta": -138.188, "eta_prime": 177.301, "theta_prime": -150.453, "eta_base": -120.655, "theta_base": -158.620, "v0": 4.777, "v1": -25.681, "v2": 35.700, "v3": -33.960, "v4": 18.424, "amplitude": 36.403, "phase_angle": 11.285, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.529, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 282.147, 162.713, 144.660 ], "x_axis": [ -0.795, -0.288, 0.534 ], "y_axis": [ 0.584, -0.602, 0.545 ], "z_axis": [ 0.165, 0.745, 0.647 ], "quaternion": [ -0.250, 0.200, 0.370, 0.872 ] } }, { "index": 144, "index_chain": 144, "chain_name": "2", "nt_resnum": 154, "nt_name": "U", "nt_code": "U", "nt_id": "///2/154", "linked_nts": [ "///2/153", "///2/155" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 172.974, "beta": -156.102, "gamma": 163.114, "delta": 81.900, "epsilon": -102.527, "zeta": -94.679, "epsilon_zeta": -7.848, "bb_type": "--", "chi": -158.324, "glyco_bond": "anti", "C5prime_xyz": [ -1.435, 8.745, 0.430 ], "P_xyz": [ 0.182, 9.844, -1.312 ], "form": ".", "ssZp": 3.997, "Dp": 4.685, "splay_angle": 31.437, "splay_distance": 5.818, "splay_ratio": 0.281, "d22": null, "d64": null, "eta": 177.368, "theta": -120.467, "eta_prime": -178.731, "theta_prime": -131.475, "eta_base": -174.501, "theta_base": -118.971, "v0": 1.526, "v1": -23.237, "v2": 34.850, "v3": -34.946, "v4": 21.104, "amplitude": 36.302, "phase_angle": 16.262, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.363, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 282.210, 166.985, 144.909 ], "x_axis": [ -0.669, -0.377, 0.640 ], "y_axis": [ 0.743, -0.360, 0.564 ], "z_axis": [ 0.018, 0.853, 0.521 ], "quaternion": [ -0.351, 0.206, 0.444, 0.798 ] } }, { "index": 145, "index_chain": 145, "chain_name": "2", "nt_resnum": 155, "nt_name": "G", "nt_code": "G", "nt_id": "///2/155", "linked_nts": [ "///2/154", "///2/156" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 93.509, "beta": -137.292, "gamma": -129.616, "delta": 82.014, "epsilon": -177.446, "zeta": -75.104, "epsilon_zeta": -102.342, "bb_type": "BI", "chi": -173.699, "glyco_bond": "anti", "C5prime_xyz": [ -1.783, 8.662, 1.290 ], "P_xyz": [ -1.455, 11.055, 0.271 ], "form": ".", "ssZp": 4.169, "Dp": 4.271, "splay_angle": 17.056, "splay_distance": 2.521, "splay_ratio": 0.149, "d22": null, "d64": null, "eta": 173.773, "theta": 152.504, "eta_prime": -173.697, "theta_prime": -178.713, "eta_base": -142.941, "theta_base": -157.605, "v0": -1.545, "v1": -20.228, "v2": 32.978, "v3": -34.808, "v4": 22.928, "amplitude": 35.335, "phase_angle": 21.046, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 279.197, 170.013, 148.859 ], "x_axis": [ -0.309, -0.855, 0.416 ], "y_axis": [ 0.951, -0.274, 0.143 ], "z_axis": [ -0.008, 0.440, 0.898 ], "quaternion": [ 0.573, -0.129, -0.185, -0.788 ] } }, { "index": 146, "index_chain": 146, "chain_name": "2", "nt_resnum": 156, "nt_name": "G", "nt_code": "G", "nt_id": "///2/156", "linked_nts": [ "///2/155", "///2/157" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": -121.063, "beta": -116.588, "gamma": 67.192, "delta": 83.559, "epsilon": -164.426, "zeta": -84.390, "epsilon_zeta": -80.036, "bb_type": "BI", "chi": -109.463, "glyco_bond": "anti", "C5prime_xyz": [ -1.599, 8.030, -2.255 ], "P_xyz": [ 1.029, 7.978, -2.162 ], "form": ".", "ssZp": 2.093, "Dp": 4.526, "splay_angle": 23.156, "splay_distance": 3.844, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 172.672, "theta": -157.981, "eta_prime": 171.143, "theta_prime": -164.459, "eta_base": -174.650, "theta_base": 178.899, "v0": 5.625, "v1": -26.399, "v2": 36.061, "v3": -33.699, "v4": 17.734, "amplitude": 36.609, "phase_angle": 9.919, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 278.344, 171.794, 150.426 ], "x_axis": [ 0.283, -0.828, 0.484 ], "y_axis": [ 0.829, 0.465, 0.310 ], "z_axis": [ -0.482, 0.313, 0.818 ], "quaternion": [ 0.801, -0.001, -0.301, -0.517 ] } }, { "index": 147, "index_chain": 147, "chain_name": "2", "nt_resnum": 157, "nt_name": "U", "nt_code": "U", "nt_id": "///2/157", "linked_nts": [ "///2/156", "///2/158" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -65.023, "beta": 153.714, "gamma": 61.364, "delta": 80.315, "epsilon": -115.895, "zeta": -64.385, "epsilon_zeta": -51.509, "bb_type": "--", "chi": -129.826, "glyco_bond": "anti", "C5prime_xyz": [ -1.862, 8.617, -1.280 ], "P_xyz": [ 0.394, 8.749, -2.608 ], "form": ".", "ssZp": 2.569, "Dp": 4.676, "splay_angle": 95.728, "splay_distance": 12.471, "splay_ratio": 0.755, "d22": null, "d64": null, "eta": 170.800, "theta": -107.579, "eta_prime": 173.025, "theta_prime": -153.253, "eta_base": 165.753, "theta_base": 133.470, "v0": -0.816, "v1": -21.882, "v2": 34.946, "v3": -36.290, "v4": 23.469, "amplitude": 37.139, "phase_angle": 19.787, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.633, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 276.555, 174.589, 152.367 ], "x_axis": [ 0.308, -0.877, 0.370 ], "y_axis": [ 0.758, 0.461, 0.461 ], "z_axis": [ -0.575, 0.138, 0.807 ], "quaternion": [ 0.802, 0.101, -0.294, -0.509 ] } }, { "index": 148, "index_chain": 148, "chain_name": "2", "nt_resnum": 158, "nt_name": "A", "nt_code": "A", "nt_id": "///2/158", "linked_nts": [ "///2/157", "///2/159" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart", "alpha": -156.875, "beta": 140.215, "gamma": 36.761, "delta": 87.335, "epsilon": -156.051, "zeta": -89.013, "epsilon_zeta": -67.038, "bb_type": "BI", "chi": -75.378, "glyco_bond": "--", "C5prime_xyz": [ -2.177, 6.297, -3.398 ], "P_xyz": [ -0.040, 4.987, -4.203 ], "form": ".", "ssZp": -0.772, "Dp": 4.639, "splay_angle": 27.285, "splay_distance": 4.611, "splay_ratio": 0.263, "d22": null, "d64": null, "eta": 28.276, "theta": -149.135, "eta_prime": 60.713, "theta_prime": -154.416, "eta_base": 42.658, "theta_base": -147.037, "v0": 11.734, "v1": -29.342, "v2": 35.000, "v3": -29.141, "v4": 11.089, "amplitude": 35.001, "phase_angle": 359.550, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.085, "filter_rmsd": 0.038, "frame": { "rmsd": 0.008, "origin": [ 277.725, 185.934, 157.411 ], "x_axis": [ 0.107, -0.057, -0.993 ], "y_axis": [ -0.030, -0.998, 0.054 ], "z_axis": [ -0.994, 0.024, -0.108 ], "quaternion": [ 0.010, 0.744, -0.029, -0.668 ] } }, { "index": 149, "index_chain": 149, "chain_name": "2", "nt_resnum": 159, "nt_name": "A", "nt_code": "A", "nt_id": "///2/159", "linked_nts": [ "///2/158", "///2/160" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -48.787, "beta": 152.269, "gamma": 58.724, "delta": 82.422, "epsilon": -147.034, "zeta": -80.676, "epsilon_zeta": -66.358, "bb_type": "BI", "chi": -88.214, "glyco_bond": "--", "C5prime_xyz": [ -2.371, 7.179, -3.063 ], "P_xyz": [ -0.660, 6.064, -4.708 ], "form": ".", "ssZp": 0.043, "Dp": 4.644, "splay_angle": 51.833, "splay_distance": 8.582, "splay_ratio": 0.437, "d22": null, "d64": null, "eta": 175.786, "theta": -147.671, "eta_prime": -172.375, "theta_prime": -143.564, "eta_base": -158.042, "theta_base": -143.840, "v0": 4.055, "v1": -25.226, "v2": 35.699, "v3": -34.332, "v4": 19.147, "amplitude": 36.554, "phase_angle": 12.420, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.525, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 274.864, 182.602, 156.006 ], "x_axis": [ 0.222, -0.219, -0.950 ], "y_axis": [ -0.185, -0.966, 0.179 ], "z_axis": [ -0.957, 0.136, -0.255 ], "quaternion": [ 0.014, 0.782, -0.129, -0.610 ] } }, { "index": 150, "index_chain": 150, "chain_name": "2", "nt_resnum": 160, "nt_name": "U", "nt_code": "U", "nt_id": "///2/160", "linked_nts": [ "///2/159", "///2/161" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -48.352, "beta": -170.742, "gamma": 52.774, "delta": 143.279, "epsilon": -91.803, "zeta": -90.330, "epsilon_zeta": -1.473, "bb_type": "--", "chi": -132.807, "glyco_bond": "anti", "C5prime_xyz": [ -1.935, 8.701, -0.582 ], "P_xyz": [ 0.172, 9.665, 0.646 ], "form": ".", "ssZp": 0.849, "Dp": 0.863, "splay_angle": 110.671, "splay_distance": 15.967, "splay_ratio": 0.823, "d22": 10.939, "d64": 14.326, "eta": -145.868, "theta": -48.025, "eta_prime": -131.533, "theta_prime": -107.025, "eta_base": -140.355, "theta_base": -142.323, "v0": -22.417, "v1": 35.104, "v2": -33.770, "v3": 21.706, "v4": 0.252, "amplitude": 35.746, "phase_angle": 160.862, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.801, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 269.200, 178.313, 151.193 ], "x_axis": [ 0.919, 0.349, -0.182 ], "y_axis": [ 0.342, -0.477, 0.810 ], "z_axis": [ 0.195, -0.807, -0.558 ], "quaternion": [ 0.470, 0.859, 0.201, 0.004 ] } }, { "index": 151, "index_chain": 151, "chain_name": "2", "nt_resnum": 161, "nt_name": "U", "nt_code": "U", "nt_id": "///2/161", "linked_nts": [ "///2/160", "///2/162" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart", "alpha": 75.489, "beta": -150.402, "gamma": 64.903, "delta": 146.983, "epsilon": -116.240, "zeta": -42.657, "epsilon_zeta": -73.583, "bb_type": "--", "chi": -110.481, "glyco_bond": "anti", "C5prime_xyz": [ -1.952, 8.291, -1.680 ], "P_xyz": [ 0.412, 9.214, -0.990 ], "form": ".", "ssZp": 1.213, "Dp": 1.357, "splay_angle": 171.634, "splay_distance": 18.691, "splay_ratio": 0.997, "d22": 10.953, "d64": 14.267, "eta": -32.738, "theta": -33.022, "eta_prime": 33.082, "theta_prime": -64.152, "eta_base": 54.157, "theta_base": -151.575, "v0": -19.750, "v1": 34.021, "v2": -34.539, "v3": 24.028, "v4": -2.878, "amplitude": 35.625, "phase_angle": 165.817, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 260.429, 165.553, 155.093 ], "x_axis": [ -0.694, 0.477, 0.539 ], "y_axis": [ 0.671, 0.699, 0.245 ], "z_axis": [ -0.260, 0.532, -0.806 ], "quaternion": [ -0.223, 0.321, 0.894, 0.217 ] } }, { "index": 152, "index_chain": 152, "chain_name": "2", "nt_resnum": 162, "nt_name": "C", "nt_code": "C", "nt_id": "///2/162", "linked_nts": [ "///2/161", "///2/163" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": -81.618, "beta": -130.730, "gamma": 111.359, "delta": 81.353, "epsilon": -157.550, "zeta": -7.802, "epsilon_zeta": -149.748, "bb_type": "--", "chi": -163.540, "glyco_bond": "anti", "C5prime_xyz": [ -1.224, 8.705, 0.740 ], "P_xyz": [ 1.338, 8.417, 0.260 ], "form": ".", "ssZp": 4.507, "Dp": 4.595, "splay_angle": 25.370, "splay_distance": 4.721, "splay_ratio": 0.241, "d22": 4.409, "d64": 5.267, "eta": -133.247, "theta": -84.775, "eta_prime": -81.564, "theta_prime": -104.493, "eta_base": 28.039, "theta_base": -78.794, "v0": 3.459, "v1": -25.302, "v2": 36.335, "v3": -35.329, "v4": 20.118, "amplitude": 37.355, "phase_angle": 13.422, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 277.156, 172.421, 150.358 ], "x_axis": [ 0.314, -0.865, 0.392 ], "y_axis": [ -0.933, -0.204, 0.298 ], "z_axis": [ -0.178, -0.459, -0.870 ], "quaternion": [ 0.245, 0.773, -0.582, 0.069 ] } }, { "index": 153, "index_chain": 153, "chain_name": "2", "nt_resnum": 163, "nt_name": "U", "nt_code": "U", "nt_id": "///2/163", "linked_nts": [ "///2/162", "///2/164" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -162.848, "beta": 131.439, "gamma": 160.782, "delta": 81.769, "epsilon": -138.919, "zeta": -102.599, "epsilon_zeta": -36.320, "bb_type": "BI", "chi": -160.017, "glyco_bond": "anti", "C5prime_xyz": [ -1.422, 8.735, 0.519 ], "P_xyz": [ -1.120, 10.649, -1.254 ], "form": ".", "ssZp": 4.388, "Dp": 4.662, "splay_angle": 23.693, "splay_distance": 3.654, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 171.111, "theta": 146.869, "eta_prime": -166.788, "theta_prime": 164.782, "eta_base": -107.978, "theta_base": 158.214, "v0": 1.767, "v1": -23.460, "v2": 34.955, "v3": -34.924, "v4": 20.930, "amplitude": 36.344, "phase_angle": 15.892, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 278.868, 168.046, 149.891 ], "x_axis": [ -0.290, -0.881, 0.374 ], "y_axis": [ -0.936, 0.180, -0.304 ], "z_axis": [ 0.200, -0.438, -0.876 ], "quaternion": [ -0.057, -0.593, 0.766, -0.242 ] } }, { "index": 154, "index_chain": 154, "chain_name": "2", "nt_resnum": 164, "nt_name": "A", "nt_code": "A", "nt_id": "///2/164", "linked_nts": [ "///2/163", "///2/165" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -79.646, "beta": 177.501, "gamma": 60.656, "delta": 85.204, "epsilon": -170.540, "zeta": -78.454, "epsilon_zeta": -92.087, "bb_type": "BI", "chi": -114.903, "glyco_bond": "anti", "C5prime_xyz": [ -1.501, 8.054, -1.984 ], "P_xyz": [ 0.936, 7.876, -2.960 ], "form": ".", "ssZp": 2.561, "Dp": 4.463, "splay_angle": 28.960, "splay_distance": 5.220, "splay_ratio": 0.333, "d22": null, "d64": null, "eta": 166.678, "theta": -161.352, "eta_prime": 169.586, "theta_prime": -172.684, "eta_base": 159.823, "theta_base": -115.494, "v0": 7.991, "v1": -27.705, "v2": 35.821, "v3": -32.141, "v4": 15.301, "amplitude": 36.024, "phase_angle": 6.082, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.331, "filter_rmsd": 0.035, "frame": { "rmsd": 0.012, "origin": [ 280.857, 168.707, 146.898 ], "x_axis": [ -0.477, -0.794, 0.378 ], "y_axis": [ -0.641, 0.020, -0.768 ], "z_axis": [ 0.602, -0.608, -0.518 ], "quaternion": [ 0.079, -0.505, 0.710, -0.485 ] } }, { "index": 155, "index_chain": 155, "chain_name": "2", "nt_resnum": 165, "nt_name": "G", "nt_code": "G", "nt_id": "///2/165", "linked_nts": [ "///2/164", "///2/166" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -64.797, "beta": 164.142, "gamma": 51.672, "delta": 78.899, "epsilon": -126.470, "zeta": -76.350, "epsilon_zeta": -50.120, "bb_type": "--", "chi": 54.606, "glyco_bond": "syn", "C5prime_xyz": [ -5.438, 4.057, 1.453 ], "P_xyz": [ -5.314, 1.621, 2.429 ], "form": ".", "ssZp": -2.514, "Dp": 4.565, "splay_angle": 36.024, "splay_distance": 5.548, "splay_ratio": 0.324, "d22": null, "d64": null, "eta": 166.712, "theta": -130.973, "eta_prime": 167.590, "theta_prime": -125.839, "eta_base": -124.221, "theta_base": -148.284, "v0": -3.666, "v1": -19.218, "v2": 33.535, "v3": -36.575, "v4": 25.345, "amplitude": 36.764, "phase_angle": 24.193, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.658, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 279.938, 165.876, 142.610 ], "x_axis": [ 0.355, -0.010, 0.935 ], "y_axis": [ 0.640, 0.731, -0.235 ], "z_axis": [ -0.681, 0.682, 0.266 ], "quaternion": [ 0.767, -0.299, -0.527, -0.212 ] } }, { "index": 156, "index_chain": 156, "chain_name": "2", "nt_resnum": 166, "nt_name": "A", "nt_code": "A", "nt_id": "///2/166", "linked_nts": [ "///2/165", "///2/167" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -50.708, "beta": 176.682, "gamma": 44.066, "delta": 80.533, "epsilon": -154.319, "zeta": -69.348, "epsilon_zeta": -84.971, "bb_type": "BI", "chi": -179.755, "glyco_bond": "anti", "C5prime_xyz": [ -1.860, 8.502, 1.613 ], "P_xyz": [ 0.352, 8.959, 2.927 ], "form": "A", "ssZp": 4.430, "Dp": 4.499, "splay_angle": 21.826, "splay_distance": 3.543, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 169.946, "theta": -150.198, "eta_prime": -172.382, "theta_prime": -145.685, "eta_base": -179.079, "theta_base": -126.643, "v0": -1.705, "v1": -20.739, "v2": 34.007, "v3": -35.969, "v4": 23.743, "amplitude": 36.485, "phase_angle": 21.239, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.582, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 282.407, 160.911, 142.448 ], "x_axis": [ -0.856, 0.385, 0.344 ], "y_axis": [ 0.128, 0.804, -0.581 ], "z_axis": [ -0.500, -0.453, -0.738 ], "quaternion": [ -0.229, 0.139, 0.922, -0.281 ] } }, { "index": 157, "index_chain": 157, "chain_name": "2", "nt_resnum": 167, "nt_name": "G", "nt_code": "G", "nt_id": "///2/167", "linked_nts": [ "///2/166", "///2/168" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -67.745, "beta": -158.263, "gamma": 37.012, "delta": 83.586, "epsilon": 172.334, "zeta": 24.490, "epsilon_zeta": 147.844, "bb_type": "--", "chi": -145.844, "glyco_bond": "anti", "C5prime_xyz": [ -1.026, 8.743, -0.232 ], "P_xyz": [ 1.325, 9.374, 0.751 ], "form": ".", "ssZp": 3.873, "Dp": 4.199, "splay_angle": 26.684, "splay_distance": 4.717, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 170.324, "theta": -107.496, "eta_prime": 179.207, "theta_prime": -136.369, "eta_base": -154.548, "theta_base": -155.855, "v0": 3.423, "v1": -23.440, "v2": 33.472, "v3": -32.495, "v4": 18.391, "amplitude": 34.370, "phase_angle": 13.126, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.415, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 280.860, 157.769, 141.908 ], "x_axis": [ -0.578, 0.816, 0.008 ], "y_axis": [ 0.524, 0.379, -0.763 ], "z_axis": [ -0.625, -0.437, -0.647 ], "quaternion": [ -0.196, 0.415, 0.807, -0.372 ] } }, { "index": 158, "index_chain": 158, "chain_name": "2", "nt_resnum": 168, "nt_name": "C", "nt_code": "C", "nt_id": "///2/168", "linked_nts": [ "///2/167", "///2/169" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -176.422, "beta": 74.192, "gamma": 165.868, "delta": 81.298, "epsilon": -123.438, "zeta": -96.868, "epsilon_zeta": -26.570, "bb_type": "--", "chi": -160.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.243, 8.756, 0.562 ], "P_xyz": [ -2.052, 10.194, -1.476 ], "form": ".", "ssZp": 4.304, "Dp": 4.719, "splay_angle": 32.504, "splay_distance": 5.118, "splay_ratio": 0.280, "d22": 4.731, "d64": 4.992, "eta": 151.871, "theta": 152.391, "eta_prime": 156.879, "theta_prime": 177.295, "eta_base": 147.651, "theta_base": -143.725, "v0": 2.350, "v1": -24.047, "v2": 35.400, "v3": -35.092, "v4": 20.690, "amplitude": 36.665, "phase_angle": 15.094, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 278.477, 153.705, 141.668 ], "x_axis": [ -0.482, 0.856, 0.186 ], "y_axis": [ 0.367, 0.390, -0.844 ], "z_axis": [ -0.795, -0.339, -0.502 ], "quaternion": [ -0.318, 0.397, 0.771, -0.384 ] } }, { "index": 159, "index_chain": 159, "chain_name": "2", "nt_resnum": 169, "nt_name": "U", "nt_code": "U", "nt_id": "///2/169", "linked_nts": [ "///2/168", "///2/170" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -39.089, "beta": 140.750, "gamma": 60.245, "delta": 80.262, "epsilon": -135.844, "zeta": -83.484, "epsilon_zeta": -52.360, "bb_type": "BI", "chi": -158.114, "glyco_bond": "anti", "C5prime_xyz": [ -1.519, 8.753, 0.406 ], "P_xyz": [ 0.980, 8.913, -0.338 ], "form": ".", "ssZp": 4.314, "Dp": 4.686, "splay_angle": 28.552, "splay_distance": 5.011, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 176.503, "theta": -117.020, "eta_prime": -163.727, "theta_prime": -137.129, "eta_base": -120.891, "theta_base": -145.181, "v0": 1.443, "v1": -23.858, "v2": 35.981, "v3": -36.157, "v4": 21.865, "amplitude": 37.519, "phase_angle": 16.462, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.711, "filter_rmsd": 0.102, "frame": { "rmsd": 0.003, "origin": [ 273.809, 154.038, 139.597 ], "x_axis": [ -0.156, 0.919, -0.362 ], "y_axis": [ 0.584, -0.210, -0.784 ], "z_axis": [ -0.797, -0.334, -0.504 ], "quaternion": [ -0.180, 0.624, 0.602, -0.464 ] } }, { "index": 160, "index_chain": 160, "chain_name": "2", "nt_resnum": 170, "nt_name": "A", "nt_code": "A", "nt_id": "///2/170", "linked_nts": [ "///2/169", "///2/171" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate", "alpha": 167.742, "beta": 176.201, "gamma": 162.246, "delta": 83.035, "epsilon": -131.721, "zeta": -119.048, "epsilon_zeta": -12.673, "bb_type": "--", "chi": -168.832, "glyco_bond": "anti", "C5prime_xyz": [ -1.630, 8.675, 1.042 ], "P_xyz": [ -0.158, 10.480, -0.154 ], "form": ".", "ssZp": 4.409, "Dp": 4.557, "splay_angle": 23.369, "splay_distance": 3.638, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 146.579, "theta": 164.042, "eta_prime": 158.331, "theta_prime": -178.451, "eta_base": 167.860, "theta_base": -156.572, "v0": -0.934, "v1": -20.290, "v2": 32.535, "v3": -34.029, "v4": 22.085, "amplitude": 34.658, "phase_angle": 20.158, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.278, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 268.866, 153.256, 139.349 ], "x_axis": [ 0.535, 0.843, -0.052 ], "y_axis": [ 0.605, -0.425, -0.673 ], "z_axis": [ -0.590, 0.329, -0.738 ], "quaternion": [ -0.305, 0.821, 0.441, -0.195 ] } }, { "index": 161, "index_chain": 161, "chain_name": "2", "nt_resnum": 171, "nt_name": "A", "nt_code": "A", "nt_id": "///2/171", "linked_nts": [ "///2/170", "///2/172" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,phosphate,splayed-apart", "alpha": -34.759, "beta": 139.474, "gamma": 62.850, "delta": 146.890, "epsilon": -127.608, "zeta": -114.585, "epsilon_zeta": -13.023, "bb_type": "--", "chi": -131.783, "glyco_bond": "anti", "C5prime_xyz": [ -1.656, 8.647, -0.547 ], "P_xyz": [ 0.943, 8.444, -0.271 ], "form": ".", "ssZp": 1.524, "Dp": 1.536, "splay_angle": 90.964, "splay_distance": 14.034, "splay_ratio": 0.713, "d22": null, "d64": null, "eta": -172.068, "theta": -74.904, "eta_prime": -140.329, "theta_prime": -154.020, "eta_base": -128.329, "theta_base": 168.311, "v0": -19.307, "v1": 33.801, "v2": -34.620, "v3": 24.351, "v4": -3.367, "amplitude": 35.589, "phase_angle": 166.597, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.010, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 265.854, 153.945, 137.429 ], "x_axis": [ 0.786, 0.552, -0.278 ], "y_axis": [ 0.229, -0.678, -0.699 ], "z_axis": [ -0.574, 0.485, -0.659 ], "quaternion": [ -0.335, 0.884, 0.221, -0.241 ] } }, { "index": 162, "index_chain": 162, "chain_name": "2", "nt_resnum": 172, "nt_name": "U", "nt_code": "U", "nt_id": "///2/172", "linked_nts": [ "///2/171", "///2/173" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 123.673, "beta": -170.631, "gamma": 43.935, "delta": 146.822, "epsilon": -95.249, "zeta": -88.257, "epsilon_zeta": -6.993, "bb_type": "--", "chi": -147.040, "glyco_bond": "anti", "C5prime_xyz": [ -1.910, 8.723, 0.232 ], "P_xyz": [ -0.230, 9.462, 2.113 ], "form": ".", "ssZp": 0.739, "Dp": 0.786, "splay_angle": 141.137, "splay_distance": 17.145, "splay_ratio": 0.944, "d22": null, "d64": null, "eta": 6.325, "theta": -66.473, "eta_prime": 51.782, "theta_prime": -82.971, "eta_base": 54.353, "theta_base": -46.610, "v0": -22.012, "v1": 36.189, "v2": -35.727, "v3": 23.951, "v4": -1.423, "amplitude": 37.285, "phase_angle": 163.377, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 254.654, 145.575, 138.635 ], "x_axis": [ 0.102, -0.991, 0.083 ], "y_axis": [ 0.624, -0.002, -0.781 ], "z_axis": [ 0.775, 0.132, 0.618 ], "quaternion": [ 0.655, -0.348, 0.264, -0.616 ] } }, { "index": 163, "index_chain": 163, "chain_name": "2", "nt_resnum": 173, "nt_name": "A", "nt_code": "A", "nt_id": "///2/173", "linked_nts": [ "///2/172", "///2/174" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": -77.524, "beta": -141.966, "gamma": 59.832, "delta": 84.557, "epsilon": -135.027, "zeta": -60.245, "epsilon_zeta": -74.782, "bb_type": "BI", "chi": 168.366, "glyco_bond": "--", "C5prime_xyz": [ -1.420, 7.949, 2.291 ], "P_xyz": [ 0.532, 7.201, 3.879 ], "form": "A", "ssZp": 4.608, "Dp": 4.713, "splay_angle": 26.231, "splay_distance": 4.211, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": -172.500, "theta": -117.600, "eta_prime": -143.746, "theta_prime": -112.901, "eta_base": -139.082, "theta_base": -78.973, "v0": 6.277, "v1": -26.318, "v2": 35.287, "v3": -32.641, "v4": 16.661, "amplitude": 35.702, "phase_angle": 8.746, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.591, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 266.983, 154.354, 130.579 ], "x_axis": [ 0.192, -0.957, -0.216 ], "y_axis": [ -0.685, -0.289, 0.668 ], "z_axis": [ -0.702, 0.020, -0.712 ], "quaternion": [ 0.219, 0.740, -0.555, -0.310 ] } }, { "index": 164, "index_chain": 164, "chain_name": "2", "nt_resnum": 174, "nt_name": "C", "nt_code": "C", "nt_id": "///2/174", "linked_nts": [ "///2/173", "///2/175" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -70.130, "beta": -167.330, "gamma": 45.192, "delta": 82.301, "epsilon": -163.151, "zeta": -75.101, "epsilon_zeta": -88.050, "bb_type": "BI", "chi": -158.630, "glyco_bond": "anti", "C5prime_xyz": [ -1.338, 8.798, 0.461 ], "P_xyz": [ 1.049, 9.345, 1.402 ], "form": "A", "ssZp": 4.299, "Dp": 4.455, "splay_angle": 21.490, "splay_distance": 3.828, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 162.479, "theta": -127.563, "eta_prime": -177.101, "theta_prime": -134.490, "eta_base": -123.561, "theta_base": -114.227, "v0": 0.995, "v1": -22.362, "v2": 34.032, "v3": -34.423, "v4": 21.096, "amplitude": 35.601, "phase_angle": 17.069, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.692, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 266.197, 152.946, 126.689 ], "x_axis": [ -0.338, -0.865, 0.370 ], "y_axis": [ -0.606, 0.502, 0.618 ], "z_axis": [ -0.720, -0.015, -0.694 ], "quaternion": [ -0.343, -0.462, 0.796, 0.189 ] } }, { "index": 165, "index_chain": 165, "chain_name": "2", "nt_resnum": 175, "nt_name": "A", "nt_code": "A", "nt_id": "///2/175", "linked_nts": [ "///2/174", "///2/176" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": 146.827, "beta": -155.962, "gamma": -178.585, "delta": 81.081, "epsilon": -136.290, "zeta": -80.395, "epsilon_zeta": -55.895, "bb_type": "BI", "chi": -178.342, "glyco_bond": "anti", "C5prime_xyz": [ -1.568, 8.454, 1.578 ], "P_xyz": [ -0.042, 10.312, 0.542 ], "form": "A", "ssZp": 4.656, "Dp": 4.675, "splay_angle": 23.147, "splay_distance": 3.697, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 164.694, "theta": -167.194, "eta_prime": -179.134, "theta_prime": -161.349, "eta_base": -139.841, "theta_base": -128.534, "v0": 1.863, "v1": -23.806, "v2": 35.537, "v3": -35.429, "v4": 21.167, "amplitude": 36.930, "phase_angle": 15.789, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.907, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 264.800, 150.847, 123.808 ], "x_axis": [ -0.530, -0.557, 0.640 ], "y_axis": [ -0.448, 0.824, 0.346 ], "z_axis": [ -0.720, -0.103, -0.686 ], "quaternion": [ -0.390, -0.288, 0.872, 0.070 ] } }, { "index": 166, "index_chain": 166, "chain_name": "2", "nt_resnum": 176, "nt_name": "U", "nt_code": "U", "nt_id": "///2/176", "linked_nts": [ "///2/175", "///2/177" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -49.071, "beta": 166.578, "gamma": 46.791, "delta": 81.161, "epsilon": -165.156, "zeta": -83.265, "epsilon_zeta": -81.891, "bb_type": "BI", "chi": -160.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.574, 8.776, 0.533 ], "P_xyz": [ 0.961, 9.311, 0.907 ], "form": ".", "ssZp": 4.319, "Dp": 4.434, "splay_angle": 31.299, "splay_distance": 4.882, "splay_ratio": 0.270, "d22": null, "d64": null, "eta": 168.467, "theta": -125.820, "eta_prime": -174.045, "theta_prime": -127.681, "eta_base": -129.280, "theta_base": -83.282, "v0": -0.384, "v1": -21.564, "v2": 34.080, "v3": -35.280, "v4": 22.490, "amplitude": 36.094, "phase_angle": 19.232, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.692, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 262.709, 148.518, 121.841 ], "x_axis": [ -0.695, 0.039, 0.718 ], "y_axis": [ -0.098, 0.984, -0.148 ], "z_axis": [ -0.712, -0.173, -0.680 ], "quaternion": [ -0.390, -0.016, 0.916, -0.087 ] } }, { "index": 167, "index_chain": 167, "chain_name": "2", "nt_resnum": 177, "nt_name": "G", "nt_code": "G", "nt_id": "///2/177", "linked_nts": [ "///2/176", "///2/178" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": 165.530, "beta": -130.711, "gamma": 151.662, "delta": 81.029, "epsilon": -107.781, "zeta": -94.319, "epsilon_zeta": -13.462, "bb_type": "--", "chi": -177.251, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.498, 1.534 ], "P_xyz": [ 0.787, 9.119, 0.365 ], "form": ".", "ssZp": 4.636, "Dp": 4.739, "splay_angle": 54.576, "splay_distance": 8.941, "splay_ratio": 0.462, "d22": null, "d64": null, "eta": 166.156, "theta": -175.544, "eta_prime": -170.873, "theta_prime": 169.428, "eta_base": -106.592, "theta_base": 148.033, "v0": 2.885, "v1": -24.663, "v2": 35.904, "v3": -35.269, "v4": 20.404, "amplitude": 37.049, "phase_angle": 14.280, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.047, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 257.851, 148.504, 121.359 ], "x_axis": [ -0.523, 0.777, 0.351 ], "y_axis": [ 0.455, 0.602, -0.656 ], "z_axis": [ -0.721, -0.183, -0.668 ], "quaternion": [ -0.321, 0.369, 0.836, -0.251 ] } }, { "index": 168, "index_chain": 168, "chain_name": "2", "nt_resnum": 178, "nt_name": "C", "nt_code": "C", "nt_id": "///2/178", "linked_nts": [ "///2/177", "///2/179" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -98.679, "beta": 68.214, "gamma": 159.592, "delta": 81.859, "epsilon": -128.133, "zeta": -69.891, "epsilon_zeta": -58.243, "bb_type": "BI", "chi": -172.460, "glyco_bond": "anti", "C5prime_xyz": [ -1.361, 8.627, 1.264 ], "P_xyz": [ -1.687, 10.150, -0.847 ], "form": ".", "ssZp": 4.581, "Dp": 4.674, "splay_angle": 30.676, "splay_distance": 4.794, "splay_ratio": 0.265, "d22": 3.744, "d64": 3.422, "eta": -160.434, "theta": 172.537, "eta_prime": 178.846, "theta_prime": -168.275, "eta_base": 154.869, "theta_base": -117.267, "v0": 1.515, "v1": -23.023, "v2": 34.553, "v3": -34.660, "v4": 20.920, "amplitude": 35.995, "phase_angle": 16.273, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.031, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 259.583, 140.533, 117.698 ], "x_axis": [ -0.809, 0.124, 0.575 ], "y_axis": [ -0.202, 0.859, -0.470 ], "z_axis": [ -0.552, -0.496, -0.670 ], "quaternion": [ -0.309, -0.021, 0.914, -0.264 ] } }, { "index": 169, "index_chain": 169, "chain_name": "2", "nt_resnum": 179, "nt_name": "C", "nt_code": "C", "nt_id": "///2/179", "linked_nts": [ "///2/178", "///2/180" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -66.322, "beta": 176.792, "gamma": 46.554, "delta": 82.612, "epsilon": -171.978, "zeta": -80.165, "epsilon_zeta": -91.812, "bb_type": "BI", "chi": -169.170, "glyco_bond": "anti", "C5prime_xyz": [ -1.222, 8.629, 1.090 ], "P_xyz": [ 1.270, 8.829, 1.886 ], "form": ".", "ssZp": 4.399, "Dp": 4.427, "splay_angle": 24.900, "splay_distance": 3.824, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 154.530, "theta": -126.416, "eta_prime": 177.898, "theta_prime": -126.108, "eta_base": -116.139, "theta_base": -77.005, "v0": 3.120, "v1": -24.268, "v2": 35.026, "v3": -34.200, "v4": 19.619, "amplitude": 36.063, "phase_angle": 13.777, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.726, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 255.042, 139.372, 116.691 ], "x_axis": [ -0.352, 0.905, 0.237 ], "y_axis": [ 0.571, 0.409, -0.712 ], "z_axis": [ -0.741, -0.115, -0.661 ], "quaternion": [ -0.314, 0.474, 0.778, -0.266 ] } }, { "index": 170, "index_chain": 170, "chain_name": "2", "nt_resnum": 180, "nt_name": "G", "nt_code": "G", "nt_id": "///2/180", "linked_nts": [ "///2/179", "///2/181" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop", "alpha": 171.998, "beta": -122.837, "gamma": 142.009, "delta": 84.844, "epsilon": -99.815, "zeta": -94.994, "epsilon_zeta": -4.821, "bb_type": "--", "chi": -178.474, "glyco_bond": "anti", "C5prime_xyz": [ -1.882, 8.647, 1.508 ], "P_xyz": [ 0.673, 8.937, 0.999 ], "form": ".", "ssZp": 4.153, "Dp": 4.296, "splay_angle": 30.149, "splay_distance": 4.843, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 173.031, "theta": -123.915, "eta_prime": -164.737, "theta_prime": -125.509, "eta_base": -98.628, "theta_base": -78.673, "v0": -5.226, "v1": -15.487, "v2": 28.942, "v3": -32.802, "v4": 24.000, "amplitude": 32.655, "phase_angle": 27.587, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 251.958, 141.177, 115.330 ], "x_axis": [ 0.210, 0.916, -0.342 ], "y_axis": [ 0.608, -0.397, -0.688 ], "z_axis": [ -0.766, -0.063, -0.640 ], "quaternion": [ -0.208, 0.750, 0.508, -0.370 ] } }, { "index": 171, "index_chain": 171, "chain_name": "2", "nt_resnum": 181, "nt_name": "A", "nt_code": "A", "nt_id": "///2/181", "linked_nts": [ "///2/180", "///2/182" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate", "alpha": -58.083, "beta": 143.354, "gamma": 56.002, "delta": 81.837, "epsilon": -136.412, "zeta": 36.937, "epsilon_zeta": 186.651, "bb_type": "--", "chi": -147.092, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.696, -0.251 ], "P_xyz": [ 1.207, 8.548, -1.126 ], "form": ".", "ssZp": 3.906, "Dp": 4.713, "splay_angle": 25.960, "splay_distance": 4.156, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 152.525, "theta": -14.279, "eta_prime": 177.896, "theta_prime": -58.545, "eta_base": -115.994, "theta_base": -105.408, "v0": 3.805, "v1": -25.403, "v2": 36.176, "v3": -34.993, "v4": 19.672, "amplitude": 37.110, "phase_angle": 12.879, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.816, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 250.227, 142.186, 110.921 ], "x_axis": [ 0.610, 0.203, -0.766 ], "y_axis": [ 0.071, -0.977, -0.203 ], "z_axis": [ -0.789, 0.069, -0.610 ], "quaternion": [ -0.076, 0.894, 0.077, -0.435 ] } }, { "index": 172, "index_chain": 172, "chain_name": "2", "nt_resnum": 182, "nt_name": "C", "nt_code": "C", "nt_id": "///2/182", "linked_nts": [ "///2/181", "///2/183" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,cap-donor", "alpha": 158.079, "beta": 154.219, "gamma": 59.203, "delta": 142.691, "epsilon": -81.956, "zeta": 69.753, "epsilon_zeta": 208.291, "bb_type": "--", "chi": -129.631, "glyco_bond": "anti", "C5prime_xyz": [ -1.790, 8.753, -0.807 ], "P_xyz": [ 0.766, 9.150, -0.400 ], "form": "Z", "ssZp": 0.502, "Dp": 0.567, "splay_angle": 32.314, "splay_distance": 5.556, "splay_ratio": 0.313, "d22": null, "d64": null, "eta": 62.889, "theta": 99.507, "eta_prime": 121.109, "theta_prime": 73.522, "eta_base": 117.716, "theta_base": 53.693, "v0": -23.352, "v1": 35.944, "v2": -34.154, "v3": 21.535, "v4": 0.930, "amplitude": 36.394, "phase_angle": 159.792, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.634, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 249.201, 142.708, 106.928 ], "x_axis": [ -0.581, 0.223, 0.783 ], "y_axis": [ -0.210, -0.970, 0.120 ], "z_axis": [ 0.786, -0.094, 0.611 ], "quaternion": [ 0.121, 0.441, 0.007, 0.889 ] } }, { "index": 173, "index_chain": 173, "chain_name": "2", "nt_resnum": 183, "nt_name": "G", "nt_code": "G", "nt_id": "///2/183", "linked_nts": [ "///2/182", "///2/184" ], "nt_type": "RNA", "dbn": ")", "summary": "~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-acceptor", "alpha": 178.647, "beta": -159.824, "gamma": 69.300, "delta": 149.610, "epsilon": -165.189, "zeta": -77.188, "epsilon_zeta": -88.000, "bb_type": "BI", "chi": 127.513, "glyco_bond": "--", "C5prime_xyz": [ -3.759, 6.600, 2.967 ], "P_xyz": [ -3.848, 4.564, 4.638 ], "form": ".", "ssZp": -1.524, "Dp": 2.149, "splay_angle": 19.946, "splay_distance": 3.688, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 107.920, "theta": -112.710, "eta_prime": 129.428, "theta_prime": -142.244, "eta_base": 130.561, "theta_base": -171.039, "v0": -24.933, "v1": 40.068, "v2": -38.912, "v3": 25.399, "v4": -0.464, "amplitude": 40.937, "phase_angle": 161.902, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 246.054, 138.612, 104.881 ], "x_axis": [ -0.660, -0.094, 0.745 ], "y_axis": [ -0.162, -0.951, -0.264 ], "z_axis": [ 0.734, -0.295, 0.612 ], "quaternion": [ 0.019, 0.412, -0.156, 0.898 ] } }, { "index": 174, "index_chain": 174, "chain_name": "2", "nt_resnum": 184, "nt_name": "G", "nt_code": "G", "nt_id": "///2/184", "linked_nts": [ "///2/183", "///2/185" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -104.104, "beta": 103.006, "gamma": 151.566, "delta": 79.374, "epsilon": -161.340, "zeta": -71.104, "epsilon_zeta": -90.236, "bb_type": "BI", "chi": -157.787, "glyco_bond": "anti", "C5prime_xyz": [ -1.512, 8.840, 0.348 ], "P_xyz": [ -1.743, 10.240, -1.872 ], "form": ".", "ssZp": 4.364, "Dp": 4.536, "splay_angle": 25.601, "splay_distance": 4.488, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": -154.851, "theta": -175.529, "eta_prime": -150.780, "theta_prime": -169.913, "eta_base": -152.761, "theta_base": -139.294, "v0": 0.032, "v1": -22.966, "v2": 35.872, "v3": -36.817, "v4": 23.206, "amplitude": 37.835, "phase_angle": 18.540, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 243.591, 141.000, 103.528 ], "x_axis": [ 0.571, 0.771, -0.284 ], "y_axis": [ 0.387, -0.557, -0.735 ], "z_axis": [ -0.725, 0.310, -0.616 ], "quaternion": [ -0.316, 0.828, 0.349, -0.304 ] } }, { "index": 175, "index_chain": 175, "chain_name": "2", "nt_resnum": 185, "nt_name": "G", "nt_code": "G", "nt_id": "///2/185", "linked_nts": [ "///2/184", "///2/186" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 155.435, "beta": -159.712, "gamma": 177.820, "delta": 82.597, "epsilon": -119.720, "zeta": -88.297, "epsilon_zeta": -31.424, "bb_type": "--", "chi": 173.493, "glyco_bond": "anti", "C5prime_xyz": [ -1.749, 8.364, 1.986 ], "P_xyz": [ -0.007, 10.242, 1.436 ], "form": "A", "ssZp": 4.540, "Dp": 4.597, "splay_angle": 27.368, "splay_distance": 4.311, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 169.698, "theta": -159.756, "eta_prime": -175.161, "theta_prime": -152.060, "eta_base": -130.209, "theta_base": -110.959, "v0": -0.575, "v1": -20.764, "v2": 32.975, "v3": -34.255, "v4": 21.966, "amplitude": 34.992, "phase_angle": 19.547, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.976, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 241.919, 144.835, 101.902 ], "x_axis": [ 0.883, 0.226, -0.411 ], "y_axis": [ 0.031, -0.903, -0.428 ], "z_axis": [ -0.468, 0.365, -0.805 ], "quaternion": [ -0.209, 0.947, 0.068, -0.232 ] } }, { "index": 176, "index_chain": 176, "chain_name": "2", "nt_resnum": 186, "nt_name": "C", "nt_code": "C", "nt_id": "///2/186", "linked_nts": [ "///2/185", "///2/187" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -44.449, "beta": 162.848, "gamma": 37.942, "delta": 81.763, "epsilon": -160.539, "zeta": -91.013, "epsilon_zeta": -69.526, "bb_type": "BI", "chi": -165.166, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.751, 0.844 ], "P_xyz": [ 1.098, 9.061, 1.572 ], "form": "A", "ssZp": 4.398, "Dp": 4.474, "splay_angle": 23.641, "splay_distance": 3.817, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 161.344, "theta": -133.960, "eta_prime": -179.876, "theta_prime": -139.921, "eta_base": -126.425, "theta_base": -114.779, "v0": 0.382, "v1": -21.959, "v2": 33.989, "v3": -34.757, "v4": 21.681, "amplitude": 35.749, "phase_angle": 18.054, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.252, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 241.261, 147.467, 98.552 ], "x_axis": [ 0.712, -0.511, -0.482 ], "y_axis": [ -0.555, -0.830, 0.060 ], "z_axis": [ -0.431, 0.224, -0.874 ], "quaternion": [ -0.044, 0.924, -0.288, -0.247 ] } }, { "index": 177, "index_chain": 177, "chain_name": "2", "nt_resnum": 187, "nt_name": "G", "nt_code": "G", "nt_id": "///2/187", "linked_nts": [ "///2/186", "///2/188" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 163.286, "beta": -144.280, "gamma": 158.098, "delta": 81.752, "epsilon": -131.787, "zeta": -92.145, "epsilon_zeta": -39.642, "bb_type": "BI", "chi": 173.630, "glyco_bond": "anti", "C5prime_xyz": [ -1.568, 8.272, 2.013 ], "P_xyz": [ 0.670, 9.399, 1.261 ], "form": "A", "ssZp": 4.656, "Dp": 4.696, "splay_angle": 23.128, "splay_distance": 3.845, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 157.731, "theta": -126.093, "eta_prime": 174.814, "theta_prime": -140.389, "eta_base": -140.395, "theta_base": -113.882, "v0": 2.924, "v1": -24.308, "v2": 35.312, "v3": -34.630, "v4": 19.999, "amplitude": 36.416, "phase_angle": 14.149, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.228, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 241.209, 149.085, 95.095 ], "x_axis": [ 0.371, -0.897, -0.240 ], "y_axis": [ -0.841, -0.434, 0.322 ], "z_axis": [ -0.393, 0.083, -0.916 ], "quaternion": [ 0.072, 0.825, -0.527, -0.192 ] } }, { "index": 178, "index_chain": 178, "chain_name": "2", "nt_resnum": 188, "nt_name": "C", "nt_code": "C", "nt_id": "///2/188", "linked_nts": [ "///2/187", "///2/189" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 163.008, "beta": -157.298, "gamma": 159.416, "delta": 81.575, "epsilon": -132.937, "zeta": -80.036, "epsilon_zeta": -52.901, "bb_type": "BI", "chi": 178.353, "glyco_bond": "anti", "C5prime_xyz": [ -1.295, 8.348, 1.793 ], "P_xyz": [ 0.801, 9.650, 0.916 ], "form": "A", "ssZp": 4.726, "Dp": 4.732, "splay_angle": 20.659, "splay_distance": 3.277, "splay_ratio": 0.184, "d22": 4.641, "d64": 4.269, "eta": 144.782, "theta": -155.470, "eta_prime": 166.340, "theta_prime": -155.232, "eta_base": -143.320, "theta_base": -136.400, "v0": 4.642, "v1": -26.166, "v2": 36.595, "v3": -34.910, "v4": 19.062, "amplitude": 37.361, "phase_angle": 11.622, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.154, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 242.228, 148.727, 91.405 ], "x_axis": [ -0.203, -0.960, 0.192 ], "y_axis": [ -0.916, 0.256, 0.309 ], "z_axis": [ -0.346, -0.114, -0.931 ], "quaternion": [ -0.174, -0.607, 0.773, 0.063 ] } }, { "index": 179, "index_chain": 179, "chain_name": "2", "nt_resnum": 189, "nt_name": "U", "nt_code": "U", "nt_id": "///2/189", "linked_nts": [ "///2/188", "///2/190" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -71.545, "beta": 178.510, "gamma": 51.934, "delta": 81.864, "epsilon": -161.419, "zeta": -66.374, "epsilon_zeta": -95.045, "bb_type": "BI", "chi": -161.442, "glyco_bond": "anti", "C5prime_xyz": [ -1.353, 8.707, 0.618 ], "P_xyz": [ 1.197, 9.141, 1.058 ], "form": ".", "ssZp": 4.402, "Dp": 4.519, "splay_angle": 36.404, "splay_distance": 5.680, "splay_ratio": 0.313, "d22": null, "d64": null, "eta": 159.900, "theta": -109.034, "eta_prime": 173.030, "theta_prime": -109.470, "eta_base": -154.320, "theta_base": -58.566, "v0": 2.466, "v1": -24.089, "v2": 35.345, "v3": -34.899, "v4": 20.447, "amplitude": 36.562, "phase_angle": 14.824, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.819, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 243.079, 147.608, 88.445 ], "x_axis": [ -0.612, -0.606, 0.508 ], "y_axis": [ -0.697, 0.717, 0.014 ], "z_axis": [ -0.372, -0.345, -0.861 ], "quaternion": [ -0.246, -0.365, 0.893, -0.093 ] } }, { "index": 180, "index_chain": 180, "chain_name": "2", "nt_resnum": 190, "nt_name": "G", "nt_code": "G", "nt_id": "///2/190", "linked_nts": [ "///2/189", "///2/191" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,internal-loop,phosphate", "alpha": 160.539, "beta": -134.032, "gamma": 152.812, "delta": 82.297, "epsilon": -106.397, "zeta": 172.198, "epsilon_zeta": 81.405, "bb_type": "BII", "chi": -177.689, "glyco_bond": "anti", "C5prime_xyz": [ -1.553, 8.532, 1.533 ], "P_xyz": [ 0.704, 9.272, 0.434 ], "form": ".", "ssZp": 4.593, "Dp": 4.682, "splay_angle": 79.492, "splay_distance": 11.203, "splay_ratio": 0.640, "d22": null, "d64": null, "eta": 163.217, "theta": 119.236, "eta_prime": -164.535, "theta_prime": 125.021, "eta_base": -87.517, "theta_base": 145.861, "v0": 1.107, "v1": -22.680, "v2": 34.388, "v3": -34.723, "v4": 21.250, "amplitude": 35.943, "phase_angle": 16.915, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.093, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 237.900, 145.278, 88.317 ], "x_axis": [ -0.899, 0.347, 0.269 ], "y_axis": [ 0.157, 0.826, -0.542 ], "z_axis": [ -0.410, -0.445, -0.796 ], "quaternion": [ -0.181, 0.134, 0.938, -0.263 ] } }, { "index": 181, "index_chain": 181, "chain_name": "2", "nt_resnum": 191, "nt_name": "A", "nt_code": "A", "nt_id": "///2/191", "linked_nts": [ "///2/190", "///2/192" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -74.845, "beta": 108.881, "gamma": 79.436, "delta": 81.759, "epsilon": 179.449, "zeta": 95.250, "epsilon_zeta": 84.199, "bb_type": "--", "chi": 176.014, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.170, 1.889 ], "P_xyz": [ 0.939, 8.261, 0.532 ], "form": ".", "ssZp": 4.336, "Dp": 4.479, "splay_angle": 42.154, "splay_distance": 7.128, "splay_ratio": 0.382, "d22": null, "d64": null, "eta": 171.503, "theta": -22.616, "eta_prime": -166.704, "theta_prime": -70.296, "eta_base": -165.511, "theta_base": -38.874, "v0": 7.787, "v1": -28.835, "v2": 37.737, "v3": -34.277, "v4": 16.781, "amplitude": 38.028, "phase_angle": 7.085, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 245.493, 141.653, 80.921 ], "x_axis": [ -0.832, -0.515, 0.208 ], "y_axis": [ -0.540, 0.837, -0.088 ], "z_axis": [ -0.128, -0.186, -0.974 ], "quaternion": [ -0.088, -0.276, 0.954, -0.072 ] } }, { "index": 182, "index_chain": 182, "chain_name": "2", "nt_resnum": 192, "nt_name": "C", "nt_code": "C", "nt_id": "///2/192", "linked_nts": [ "///2/191", "///2/193" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -52.533, "beta": -66.974, "gamma": -128.150, "delta": 83.087, "epsilon": 175.508, "zeta": 24.939, "epsilon_zeta": 150.569, "bb_type": "--", "chi": -160.083, "glyco_bond": "anti", "C5prime_xyz": [ -1.090, 8.689, 0.547 ], "P_xyz": [ -2.097, 10.332, -1.266 ], "form": ".", "ssZp": 4.285, "Dp": 4.334, "splay_angle": 24.940, "splay_distance": 4.565, "splay_ratio": 0.235, "d22": 3.952, "d64": 4.667, "eta": 168.797, "theta": -170.875, "eta_prime": -174.546, "theta_prime": -159.813, "eta_base": -90.375, "theta_base": -122.768, "v0": 4.775, "v1": -25.612, "v2": 35.564, "v3": -33.783, "v4": 18.351, "amplitude": 36.259, "phase_angle": 11.238, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 238.393, 141.403, 80.336 ], "x_axis": [ -0.827, 0.553, -0.100 ], "y_axis": [ 0.493, 0.630, -0.600 ], "z_axis": [ -0.268, -0.546, -0.794 ], "quaternion": [ -0.047, 0.290, 0.902, -0.318 ] } }, { "index": 183, "index_chain": 183, "chain_name": "2", "nt_resnum": 193, "nt_name": "C", "nt_code": "C", "nt_id": "///2/193", "linked_nts": [ "///2/192", "///2/194" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 171.824, "beta": 112.610, "gamma": 155.970, "delta": 82.835, "epsilon": -149.040, "zeta": -72.861, "epsilon_zeta": -76.179, "bb_type": "BI", "chi": -171.784, "glyco_bond": "anti", "C5prime_xyz": [ -1.181, 8.578, 1.246 ], "P_xyz": [ -0.725, 10.599, -0.359 ], "form": "A", "ssZp": 4.562, "Dp": 4.605, "splay_angle": 24.207, "splay_distance": 3.777, "splay_ratio": 0.211, "d22": 4.423, "d64": 4.496, "eta": 152.474, "theta": 166.435, "eta_prime": 175.062, "theta_prime": -178.912, "eta_base": -131.525, "theta_base": -144.994, "v0": 3.443, "v1": -24.334, "v2": 34.800, "v3": -33.798, "v4": 19.165, "amplitude": 35.749, "phase_angle": 13.233, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 234.252, 140.924, 78.476 ], "x_axis": [ -0.291, 0.919, -0.266 ], "y_axis": [ 0.831, 0.105, -0.546 ], "z_axis": [ -0.474, -0.380, -0.794 ], "quaternion": [ -0.070, 0.591, 0.740, -0.313 ] } }, { "index": 184, "index_chain": 184, "chain_name": "2", "nt_resnum": 194, "nt_name": "C", "nt_code": "C", "nt_id": "///2/194", "linked_nts": [ "///2/193", "///2/195" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.023, "beta": 173.517, "gamma": 52.947, "delta": 82.937, "epsilon": -154.804, "zeta": -73.914, "epsilon_zeta": -80.890, "bb_type": "BI", "chi": -165.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.707, 0.875 ], "P_xyz": [ 1.284, 8.958, 1.388 ], "form": "A", "ssZp": 4.441, "Dp": 4.534, "splay_angle": 25.641, "splay_distance": 4.318, "splay_ratio": 0.229, "d22": 4.336, "d64": 4.647, "eta": 170.586, "theta": -122.715, "eta_prime": -173.975, "theta_prime": -134.153, "eta_base": -132.442, "theta_base": -113.961, "v0": 1.984, "v1": -23.010, "v2": 34.113, "v3": -33.948, "v4": 20.162, "amplitude": 35.400, "phase_angle": 15.501, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.976, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 231.214, 139.998, 76.432 ], "x_axis": [ 0.243, 0.831, -0.500 ], "y_axis": [ 0.861, -0.423, -0.284 ], "z_axis": [ -0.447, -0.361, -0.818 ], "quaternion": [ 0.025, 0.788, 0.537, -0.301 ] } }, { "index": 185, "index_chain": 185, "chain_name": "2", "nt_resnum": 195, "nt_name": "C", "nt_code": "C", "nt_id": "///2/195", "linked_nts": [ "///2/194", "///2/196" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 167.215, "beta": -172.138, "gamma": 161.814, "delta": 81.646, "epsilon": -133.166, "zeta": -76.979, "epsilon_zeta": -56.187, "bb_type": "BI", "chi": 172.478, "glyco_bond": "anti", "C5prime_xyz": [ -1.336, 8.185, 2.106 ], "P_xyz": [ 0.657, 9.817, 1.650 ], "form": "A", "ssZp": 4.680, "Dp": 4.723, "splay_angle": 24.874, "splay_distance": 3.987, "splay_ratio": 0.223, "d22": 4.924, "d64": 4.956, "eta": 153.626, "theta": -159.434, "eta_prime": 169.587, "theta_prime": -155.600, "eta_base": -148.096, "theta_base": -136.213, "v0": 4.966, "v1": -26.286, "v2": 36.475, "v3": -34.612, "v4": 18.679, "amplitude": 37.171, "phase_angle": 11.107, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.454, "filter_rmsd": 0.070, "frame": { "rmsd": 0.009, "origin": [ 228.198, 140.432, 73.373 ], "x_axis": [ 0.776, 0.568, -0.274 ], "y_axis": [ 0.608, -0.789, 0.090 ], "z_axis": [ -0.165, -0.236, -0.958 ], "quaternion": [ 0.087, 0.938, 0.313, -0.117 ] } }, { "index": 186, "index_chain": 186, "chain_name": "2", "nt_resnum": 196, "nt_name": "C", "nt_code": "C", "nt_id": "///2/196", "linked_nts": [ "///2/195", "///2/197" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop", "alpha": -70.033, "beta": -172.447, "gamma": 46.850, "delta": 81.455, "epsilon": -179.189, "zeta": -88.778, "epsilon_zeta": -90.411, "bb_type": "BI", "chi": -166.973, "glyco_bond": "anti", "C5prime_xyz": [ -1.436, 8.739, 0.912 ], "P_xyz": [ 0.937, 9.229, 1.913 ], "form": ".", "ssZp": 4.280, "Dp": 4.325, "splay_angle": 45.721, "splay_distance": 7.103, "splay_ratio": 0.391, "d22": 6.737, "d64": 7.376, "eta": 161.614, "theta": 172.072, "eta_prime": 175.336, "theta_prime": 174.535, "eta_base": -153.743, "theta_base": 171.685, "v0": 0.930, "v1": -22.747, "v2": 34.661, "v3": -35.104, "v4": 21.552, "amplitude": 36.279, "phase_angle": 17.179, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.776, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 226.227, 141.803, 70.190 ], "x_axis": [ 0.993, 0.103, 0.065 ], "y_axis": [ 0.086, -0.971, 0.223 ], "z_axis": [ 0.086, -0.216, -0.973 ], "quaternion": [ 0.111, 0.992, 0.048, 0.038 ] } }, { "index": 187, "index_chain": 187, "chain_name": "2", "nt_resnum": 197, "nt_name": "U", "nt_code": "U", "nt_id": "///2/197", "linked_nts": [ "///2/196", "///2/198" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop", "alpha": -69.398, "beta": -157.301, "gamma": 36.366, "delta": 80.752, "epsilon": -125.314, "zeta": -58.830, "epsilon_zeta": -66.484, "bb_type": "--", "chi": -173.398, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.573, 1.313 ], "P_xyz": [ 0.497, 8.998, 2.999 ], "form": ".", "ssZp": 4.625, "Dp": 4.709, "splay_angle": 41.931, "splay_distance": 6.445, "splay_ratio": 0.358, "d22": 3.921, "d64": 4.547, "eta": 176.703, "theta": -118.465, "eta_prime": 162.599, "theta_prime": -105.542, "eta_base": 149.321, "theta_base": -52.181, "v0": 1.838, "v1": -23.858, "v2": 35.580, "v3": -35.487, "v4": 21.208, "amplitude": 36.978, "phase_angle": 15.806, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.524, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 219.965, 143.046, 67.076 ], "x_axis": [ 0.835, 0.269, 0.480 ], "y_axis": [ 0.152, -0.951, 0.269 ], "z_axis": [ 0.529, -0.151, -0.835 ], "quaternion": [ 0.110, 0.951, 0.111, 0.265 ] } }, { "index": 188, "index_chain": 188, "chain_name": "2", "nt_resnum": 198, "nt_name": "U", "nt_code": "U", "nt_id": "///2/198", "linked_nts": [ "///2/197", "///2/199" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -60.470, "beta": 164.899, "gamma": 58.923, "delta": 81.014, "epsilon": -115.545, "zeta": -59.837, "epsilon_zeta": -55.708, "bb_type": "--", "chi": -163.220, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.679, 0.726 ], "P_xyz": [ 1.240, 8.994, 0.638 ], "form": ".", "ssZp": 4.358, "Dp": 4.755, "splay_angle": 87.298, "splay_distance": 12.474, "splay_ratio": 0.690, "d22": 9.332, "d64": 11.898, "eta": 169.955, "theta": -81.628, "eta_prime": -160.575, "theta_prime": -129.232, "eta_base": -91.583, "theta_base": 176.209, "v0": 3.046, "v1": -25.030, "v2": 36.295, "v3": -35.547, "v4": 20.490, "amplitude": 37.415, "phase_angle": 14.054, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.636, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 226.214, 141.514, 66.714 ], "x_axis": [ 0.451, -0.773, 0.447 ], "y_axis": [ -0.703, -0.616, -0.356 ], "z_axis": [ 0.551, -0.153, -0.821 ], "quaternion": [ -0.060, 0.850, -0.434, 0.293 ] } }, { "index": 189, "index_chain": 189, "chain_name": "2", "nt_resnum": 199, "nt_name": "C", "nt_code": "C", "nt_id": "///2/199", "linked_nts": [ "///2/198", "///2/200" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,hairpin-loop,splayed-apart", "alpha": 159.647, "beta": 150.969, "gamma": 30.736, "delta": 81.374, "epsilon": -118.739, "zeta": -141.853, "epsilon_zeta": 23.114, "bb_type": "--", "chi": -170.703, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.613, 1.171 ], "P_xyz": [ 1.266, 8.575, 1.895 ], "form": ".", "ssZp": 4.578, "Dp": 4.749, "splay_angle": 40.920, "splay_distance": 6.137, "splay_ratio": 0.351, "d22": null, "d64": null, "eta": -16.232, "theta": 173.632, "eta_prime": 21.976, "theta_prime": -177.362, "eta_base": 16.324, "theta_base": -170.979, "v0": 3.386, "v1": -25.103, "v2": 36.087, "v3": -35.115, "v4": 20.024, "amplitude": 37.112, "phase_angle": 13.493, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.250, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 225.270, 145.001, 54.775 ], "x_axis": [ -0.962, 0.094, -0.257 ], "y_axis": [ -0.187, -0.912, 0.364 ], "z_axis": [ -0.200, 0.399, 0.895 ], "quaternion": [ 0.072, -0.118, 0.196, 0.971 ] } }, { "index": 190, "index_chain": 190, "chain_name": "2", "nt_resnum": 200, "nt_name": "G", "nt_code": "G", "nt_id": "///2/200", "linked_nts": [ "///2/199", "///2/201" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -55.022, "beta": 126.059, "gamma": 60.637, "delta": 81.981, "epsilon": -132.820, "zeta": -56.269, "epsilon_zeta": -76.552, "bb_type": "BI", "chi": -172.034, "glyco_bond": "anti", "C5prime_xyz": [ -1.295, 8.554, 1.235 ], "P_xyz": [ 1.211, 8.355, 0.485 ], "form": ".", "ssZp": 4.676, "Dp": 4.750, "splay_angle": 38.075, "splay_distance": 5.772, "splay_ratio": 0.326, "d22": null, "d64": null, "eta": 173.622, "theta": -107.319, "eta_prime": 174.775, "theta_prime": -110.334, "eta_base": 175.980, "theta_base": -66.699, "v0": 4.950, "v1": -26.635, "v2": 36.996, "v3": -35.128, "v4": 19.052, "amplitude": 37.717, "phase_angle": 11.224, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.339, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 228.868, 147.189, 59.238 ], "x_axis": [ -0.946, 0.121, -0.299 ], "y_axis": [ -0.227, -0.908, 0.351 ], "z_axis": [ -0.229, 0.401, 0.887 ], "quaternion": [ 0.090, -0.137, 0.194, 0.967 ] } }, { "index": 191, "index_chain": 191, "chain_name": "2", "nt_resnum": 201, "nt_name": "C", "nt_code": "C", "nt_id": "///2/201", "linked_nts": [ "///2/200", "///2/202" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -65.939, "beta": 160.525, "gamma": 65.442, "delta": 83.394, "epsilon": -144.809, "zeta": -36.746, "epsilon_zeta": -108.062, "bb_type": "BI", "chi": -172.305, "glyco_bond": "anti", "C5prime_xyz": [ -1.281, 8.591, 1.267 ], "P_xyz": [ 1.344, 8.761, 1.285 ], "form": ".", "ssZp": 4.575, "Dp": 4.616, "splay_angle": 48.566, "splay_distance": 7.174, "splay_ratio": 0.411, "d22": null, "d64": null, "eta": 163.151, "theta": -101.155, "eta_prime": -163.125, "theta_prime": -103.287, "eta_base": -82.144, "theta_base": -58.254, "v0": 2.850, "v1": -23.826, "v2": 34.535, "v3": -33.825, "v4": 19.571, "amplitude": 35.609, "phase_angle": 14.111, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.602, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 223.508, 147.254, 61.380 ], "x_axis": [ -0.595, -0.783, 0.184 ], "y_axis": [ 0.761, -0.474, 0.444 ], "z_axis": [ -0.260, 0.403, 0.877 ], "quaternion": [ -0.450, -0.022, 0.247, 0.858 ] } }, { "index": 192, "index_chain": 192, "chain_name": "2", "nt_resnum": 202, "nt_name": "G", "nt_code": "G", "nt_id": "///2/202", "linked_nts": [ "///2/201", "///2/203" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -93.510, "beta": -161.803, "gamma": 48.311, "delta": 82.111, "epsilon": -124.850, "zeta": -58.323, "epsilon_zeta": -66.527, "bb_type": "--", "chi": 176.386, "glyco_bond": "--", "C5prime_xyz": [ -1.203, 8.206, 1.882 ], "P_xyz": [ 1.059, 7.947, 3.189 ], "form": ".", "ssZp": 4.824, "Dp": 4.813, "splay_angle": 33.843, "splay_distance": 5.232, "splay_ratio": 0.296, "d22": null, "d64": null, "eta": 154.272, "theta": -112.797, "eta_prime": -177.716, "theta_prime": -105.799, "eta_base": -103.462, "theta_base": -58.313, "v0": 7.781, "v1": -28.839, "v2": 37.882, "v3": -34.406, "v4": 16.808, "amplitude": 38.178, "phase_angle": 7.134, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.114, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 222.187, 143.961, 67.615 ], "x_axis": [ 0.638, -0.769, -0.045 ], "y_axis": [ 0.710, 0.609, -0.354 ], "z_axis": [ 0.299, 0.194, 0.934 ], "quaternion": [ 0.892, -0.153, 0.097, -0.415 ] } }, { "index": 193, "index_chain": 193, "chain_name": "2", "nt_resnum": 203, "nt_name": "G", "nt_code": "G", "nt_id": "///2/203", "linked_nts": [ "///2/202", "///2/204" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,phosphate", "alpha": -64.547, "beta": 172.047, "gamma": 53.842, "delta": 78.257, "epsilon": -145.259, "zeta": -76.698, "epsilon_zeta": -68.561, "bb_type": "BI", "chi": -174.823, "glyco_bond": "anti", "C5prime_xyz": [ -1.595, 8.589, 1.345 ], "P_xyz": [ 0.929, 9.100, 1.825 ], "form": "A", "ssZp": 4.701, "Dp": 4.699, "splay_angle": 25.515, "splay_distance": 4.073, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 157.955, "theta": -148.867, "eta_prime": -173.946, "theta_prime": -146.990, "eta_base": -99.239, "theta_base": -125.444, "v0": 2.226, "v1": -25.508, "v2": 37.801, "v3": -37.542, "v4": 22.246, "amplitude": 39.210, "phase_angle": 15.404, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.638, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 225.987, 141.665, 70.382 ], "x_axis": [ 0.920, 0.088, -0.383 ], "y_axis": [ -0.165, 0.971, -0.173 ], "z_axis": [ 0.356, 0.223, 0.907 ], "quaternion": [ 0.974, -0.102, 0.190, 0.065 ] } }, { "index": 194, "index_chain": 194, "chain_name": "2", "nt_resnum": 204, "nt_name": "G", "nt_code": "G", "nt_id": "///2/204", "linked_nts": [ "///2/203", "///2/205" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -64.030, "beta": 169.183, "gamma": 60.640, "delta": 78.672, "epsilon": -150.908, "zeta": -75.430, "epsilon_zeta": -75.478, "bb_type": "BI", "chi": -176.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.796, 8.600, 1.429 ], "P_xyz": [ 0.708, 9.244, 1.844 ], "form": "A", "ssZp": 4.625, "Dp": 4.622, "splay_angle": 24.275, "splay_distance": 3.873, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 170.154, "theta": -151.372, "eta_prime": -177.192, "theta_prime": -150.317, "eta_base": -140.962, "theta_base": -129.138, "v0": 0.160, "v1": -23.376, "v2": 36.363, "v3": -37.284, "v4": 23.396, "amplitude": 38.313, "phase_angle": 18.361, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.877, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 228.160, 140.262, 73.528 ], "x_axis": [ 0.679, 0.525, -0.513 ], "y_axis": [ -0.611, 0.792, 0.001 ], "z_axis": [ 0.407, 0.313, 0.858 ], "quaternion": [ 0.912, -0.085, 0.252, 0.311 ] } }, { "index": 195, "index_chain": 195, "chain_name": "2", "nt_resnum": 205, "nt_name": "G", "nt_code": "G", "nt_id": "///2/205", "linked_nts": [ "///2/204", "///2/206" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.736, "beta": 179.539, "gamma": 58.318, "delta": 80.583, "epsilon": -161.579, "zeta": -92.276, "epsilon_zeta": -69.303, "bb_type": "BI", "chi": -164.941, "glyco_bond": "anti", "C5prime_xyz": [ -1.490, 8.753, 0.799 ], "P_xyz": [ 1.055, 9.285, 1.150 ], "form": "A", "ssZp": 4.484, "Dp": 4.535, "splay_angle": 24.859, "splay_distance": 3.941, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 170.307, "theta": -141.562, "eta_prime": -178.626, "theta_prime": -145.036, "eta_base": -144.631, "theta_base": -122.404, "v0": 1.299, "v1": -23.524, "v2": 35.539, "v3": -35.762, "v4": 21.720, "amplitude": 37.089, "phase_angle": 16.625, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 231.072, 139.589, 75.991 ], "x_axis": [ 0.247, 0.858, -0.450 ], "y_axis": [ -0.859, 0.409, 0.309 ], "z_axis": [ 0.449, 0.309, 0.838 ], "quaternion": [ 0.790, -0.000, 0.284, 0.543 ] } }, { "index": 196, "index_chain": 196, "chain_name": "2", "nt_resnum": 206, "nt_name": "G", "nt_code": "G", "nt_id": "///2/206", "linked_nts": [ "///2/205", "///2/207" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 177.360, "beta": -148.738, "gamma": 150.876, "delta": 82.920, "epsilon": -142.243, "zeta": -85.954, "epsilon_zeta": -56.289, "bb_type": "BI", "chi": -171.270, "glyco_bond": "anti", "C5prime_xyz": [ -1.145, 8.528, 1.213 ], "P_xyz": [ 1.010, 9.301, -0.067 ], "form": "A", "ssZp": 4.653, "Dp": 4.700, "splay_angle": 26.281, "splay_distance": 4.034, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 160.135, "theta": -158.754, "eta_prime": 175.724, "theta_prime": -161.485, "eta_base": -145.705, "theta_base": -145.392, "v0": 5.550, "v1": -26.257, "v2": 35.825, "v3": -33.636, "v4": 17.740, "amplitude": 36.385, "phase_angle": 10.064, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.024, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 234.245, 140.625, 78.085 ], "x_axis": [ -0.266, 0.929, -0.256 ], "y_axis": [ -0.802, -0.066, 0.594 ], "z_axis": [ 0.535, 0.363, 0.762 ], "quaternion": [ 0.598, 0.097, 0.331, 0.724 ] } }, { "index": 197, "index_chain": 197, "chain_name": "2", "nt_resnum": 207, "nt_name": "G", "nt_code": "G", "nt_id": "///2/207", "linked_nts": [ "///2/206", "///2/208" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -61.507, "beta": 161.986, "gamma": 63.155, "delta": 82.748, "epsilon": -134.540, "zeta": -62.272, "epsilon_zeta": -72.268, "bb_type": "BI", "chi": -166.251, "glyco_bond": "anti", "C5prime_xyz": [ -1.297, 8.650, 0.902 ], "P_xyz": [ 1.308, 8.885, 0.693 ], "form": ".", "ssZp": 4.557, "Dp": 4.722, "splay_angle": 37.368, "splay_distance": 5.741, "splay_ratio": 0.320, "d22": null, "d64": null, "eta": 175.836, "theta": -120.678, "eta_prime": -173.116, "theta_prime": -117.654, "eta_base": -144.968, "theta_base": -75.731, "v0": 4.046, "v1": -25.392, "v2": 35.906, "v3": -34.553, "v4": 19.271, "amplitude": 36.770, "phase_angle": 12.444, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.713, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 237.661, 141.907, 79.807 ], "x_axis": [ -0.573, 0.816, 0.076 ], "y_axis": [ -0.576, -0.467, 0.671 ], "z_axis": [ 0.582, 0.341, 0.738 ], "quaternion": [ 0.418, 0.197, 0.303, 0.833 ] } }, { "index": 198, "index_chain": 198, "chain_name": "2", "nt_resnum": 208, "nt_name": "G", "nt_code": "G", "nt_id": "///2/208", "linked_nts": [ "///2/207", "///2/209" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -63.249, "beta": 163.171, "gamma": 64.121, "delta": 81.852, "epsilon": -131.378, "zeta": -156.853, "epsilon_zeta": 25.475, "bb_type": "--", "chi": -164.403, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.659, 0.788 ], "P_xyz": [ 1.357, 8.880, 0.468 ], "form": ".", "ssZp": 4.517, "Dp": 4.754, "splay_angle": 66.767, "splay_distance": 9.776, "splay_ratio": 0.550, "d22": null, "d64": null, "eta": 170.118, "theta": 145.457, "eta_prime": -162.340, "theta_prime": 153.438, "eta_base": -95.713, "theta_base": 160.686, "v0": 4.768, "v1": -26.350, "v2": 36.757, "v3": -35.012, "v4": 19.075, "amplitude": 37.507, "phase_angle": 11.477, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.714, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 236.798, 145.876, 83.864 ], "x_axis": [ -0.778, 0.035, 0.627 ], "y_axis": [ 0.203, -0.931, 0.303 ], "z_axis": [ 0.595, 0.363, 0.717 ], "quaternion": [ -0.045, 0.330, 0.180, 0.926 ] } }, { "index": 199, "index_chain": 199, "chain_name": "2", "nt_resnum": 209, "nt_name": "A", "nt_code": "A", "nt_id": "///2/209", "linked_nts": [ "///2/208", "///2/210" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -56.935, "beta": 144.137, "gamma": 49.619, "delta": 80.732, "epsilon": -136.727, "zeta": -66.193, "epsilon_zeta": -70.534, "bb_type": "BI", "chi": -174.985, "glyco_bond": "anti", "C5prime_xyz": [ -1.566, 8.517, 1.391 ], "P_xyz": [ 1.047, 8.636, 1.525 ], "form": ".", "ssZp": 4.660, "Dp": 4.693, "splay_angle": 28.260, "splay_distance": 4.411, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": -178.859, "theta": -123.243, "eta_prime": 170.539, "theta_prime": -122.883, "eta_base": 156.567, "theta_base": -78.975, "v0": 2.132, "v1": -24.395, "v2": 36.160, "v3": -35.918, "v4": 21.311, "amplitude": 37.510, "phase_angle": 15.423, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.665, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 246.437, 147.008, 82.689 ], "x_axis": [ -0.915, 0.397, 0.074 ], "y_axis": [ -0.335, -0.847, 0.413 ], "z_axis": [ 0.226, 0.353, 0.908 ], "quaternion": [ 0.191, 0.078, 0.200, 0.958 ] } }, { "index": 200, "index_chain": 200, "chain_name": "2", "nt_resnum": 210, "nt_name": "U", "nt_code": "U", "nt_id": "///2/210", "linked_nts": [ "///2/209", "///2/211" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -58.117, "beta": 166.482, "gamma": 54.529, "delta": 81.351, "epsilon": -142.915, "zeta": -80.952, "epsilon_zeta": -61.963, "bb_type": "BI", "chi": -163.501, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.728, 0.736 ], "P_xyz": [ 1.098, 9.144, 0.961 ], "form": ".", "ssZp": 4.439, "Dp": 4.609, "splay_angle": 38.082, "splay_distance": 6.151, "splay_ratio": 0.328, "d22": null, "d64": null, "eta": 167.446, "theta": -109.766, "eta_prime": -169.269, "theta_prime": -116.380, "eta_base": -100.979, "theta_base": -81.664, "v0": 0.594, "v1": -22.379, "v2": 34.421, "v3": -35.043, "v4": 21.731, "amplitude": 36.130, "phase_angle": 17.696, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.884, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 244.308, 149.353, 85.760 ], "x_axis": [ -0.828, -0.417, 0.374 ], "y_axis": [ 0.524, -0.813, 0.253 ], "z_axis": [ 0.198, 0.406, 0.892 ], "quaternion": [ -0.250, 0.152, 0.175, 0.940 ] } }, { "index": 201, "index_chain": 201, "chain_name": "2", "nt_resnum": 211, "nt_name": "G", "nt_code": "G", "nt_id": "///2/211", "linked_nts": [ "///2/210", "///2/212" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 151.208, "beta": -144.725, "gamma": 174.030, "delta": 82.109, "epsilon": -114.961, "zeta": -117.957, "epsilon_zeta": 2.996, "bb_type": "--", "chi": 153.370, "glyco_bond": "anti", "C5prime_xyz": [ -2.141, 7.700, 2.819 ], "P_xyz": [ -0.048, 9.268, 2.942 ], "form": "A", "ssZp": 4.247, "Dp": 4.635, "splay_angle": 24.792, "splay_distance": 3.880, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 163.003, "theta": -138.417, "eta_prime": -173.466, "theta_prime": -144.231, "eta_base": -111.766, "theta_base": -122.162, "v0": 0.885, "v1": -22.515, "v2": 34.362, "v3": -34.816, "v4": 21.397, "amplitude": 35.978, "phase_angle": 17.238, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.606, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 242.172, 148.952, 91.514 ], "x_axis": [ -0.259, -0.962, -0.086 ], "y_axis": [ 0.889, -0.203, -0.410 ], "z_axis": [ 0.377, -0.183, 0.908 ], "quaternion": [ 0.601, -0.095, 0.193, -0.770 ] } }, { "index": 202, "index_chain": 202, "chain_name": "2", "nt_resnum": 212, "nt_name": "C", "nt_code": "C", "nt_id": "///2/212", "linked_nts": [ "///2/211", "///2/213" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 167.399, "beta": -138.582, "gamma": 148.580, "delta": 81.826, "epsilon": -127.269, "zeta": -92.158, "epsilon_zeta": -35.111, "bb_type": "--", "chi": -179.099, "glyco_bond": "anti", "C5prime_xyz": [ -1.464, 8.536, 1.631 ], "P_xyz": [ 0.961, 9.160, 0.879 ], "form": "A", "ssZp": 4.549, "Dp": 4.615, "splay_angle": 19.870, "splay_distance": 3.156, "splay_ratio": 0.173, "d22": null, "d64": null, "eta": 143.605, "theta": -150.923, "eta_prime": 164.783, "theta_prime": -155.157, "eta_base": -159.631, "theta_base": -140.315, "v0": 0.390, "v1": -21.983, "v2": 33.975, "v3": -34.713, "v4": 21.651, "amplitude": 35.725, "phase_angle": 18.008, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.069, "frame": { "rmsd": 0.009, "origin": [ 241.249, 148.846, 95.281 ], "x_axis": [ 0.320, -0.840, -0.438 ], "y_axis": [ 0.867, 0.446, -0.222 ], "z_axis": [ 0.382, -0.309, 0.871 ], "quaternion": [ 0.812, 0.027, 0.252, -0.526 ] } }, { "index": 203, "index_chain": 203, "chain_name": "2", "nt_resnum": 213, "nt_name": "G", "nt_code": "G", "nt_id": "///2/213", "linked_nts": [ "///2/212", "///2/214" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -59.432, "beta": 155.159, "gamma": 51.413, "delta": 80.836, "epsilon": -146.468, "zeta": -80.187, "epsilon_zeta": -66.281, "bb_type": "BI", "chi": -169.350, "glyco_bond": "anti", "C5prime_xyz": [ -1.626, 8.717, 1.043 ], "P_xyz": [ 0.954, 9.108, 1.274 ], "form": "A", "ssZp": 4.532, "Dp": 4.597, "splay_angle": 20.767, "splay_distance": 3.218, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 159.005, "theta": -145.262, "eta_prime": 172.143, "theta_prime": -137.805, "eta_base": -155.701, "theta_base": -100.879, "v0": -0.137, "v1": -22.101, "v2": 34.649, "v3": -35.695, "v4": 22.606, "amplitude": 36.606, "phase_angle": 18.816, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.518, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 240.770, 147.588, 98.135 ], "x_axis": [ 0.659, -0.476, -0.582 ], "y_axis": [ 0.631, 0.771, 0.084 ], "z_axis": [ 0.408, -0.423, 0.809 ], "quaternion": [ 0.900, 0.141, 0.275, -0.308 ] } }, { "index": 204, "index_chain": 204, "chain_name": "2", "nt_resnum": 214, "nt_name": "U", "nt_code": "U", "nt_id": "///2/214", "linked_nts": [ "///2/213", "///2/215" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -50.485, "beta": 160.852, "gamma": 70.967, "delta": 147.095, "epsilon": -90.871, "zeta": -96.136, "epsilon_zeta": 5.266, "bb_type": "--", "chi": -131.853, "glyco_bond": "anti", "C5prime_xyz": [ -1.831, 8.663, -0.584 ], "P_xyz": [ 0.754, 8.958, -0.240 ], "form": ".", "ssZp": 0.699, "Dp": 0.733, "splay_angle": 104.540, "splay_distance": 15.342, "splay_ratio": 0.791, "d22": null, "d64": null, "eta": -150.583, "theta": -68.418, "eta_prime": -121.712, "theta_prime": -97.048, "eta_base": -84.269, "theta_base": -67.140, "v0": -20.897, "v1": 35.211, "v2": -35.312, "v3": 24.159, "v4": -2.248, "amplitude": 36.607, "phase_angle": 164.715, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.627, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 242.515, 145.262, 99.514 ], "x_axis": [ 0.894, 0.128, -0.429 ], "y_axis": [ 0.174, 0.784, 0.596 ], "z_axis": [ 0.413, -0.607, 0.679 ], "quaternion": [ 0.916, 0.328, 0.230, -0.012 ] } }, { "index": 205, "index_chain": 205, "chain_name": "2", "nt_resnum": 215, "nt_name": "G", "nt_code": "G", "nt_id": "///2/215", "linked_nts": [ "///2/214", "///2/216" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,splayed-apart", "alpha": -92.106, "beta": -158.443, "gamma": 49.840, "delta": 82.910, "epsilon": -148.537, "zeta": -76.906, "epsilon_zeta": -71.630, "bb_type": "BI", "chi": -158.240, "glyco_bond": "anti", "C5prime_xyz": [ -1.224, 8.735, 0.456 ], "P_xyz": [ 1.200, 9.108, 1.385 ], "form": "A", "ssZp": 4.361, "Dp": 4.616, "splay_angle": 22.366, "splay_distance": 3.533, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 146.962, "theta": -148.259, "eta_prime": -178.427, "theta_prime": -143.480, "eta_base": -155.460, "theta_base": -112.179, "v0": 3.614, "v1": -24.633, "v2": 35.127, "v3": -34.031, "v4": 19.202, "amplitude": 36.053, "phase_angle": 13.013, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.418, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 245.049, 149.091, 114.152 ], "x_axis": [ 0.593, 0.509, -0.624 ], "y_axis": [ -0.702, -0.054, -0.711 ], "z_axis": [ -0.396, 0.859, 0.325 ], "quaternion": [ 0.683, -0.575, 0.084, 0.443 ] } }, { "index": 206, "index_chain": 206, "chain_name": "2", "nt_resnum": 216, "nt_name": "C", "nt_code": "C", "nt_id": "///2/216", "linked_nts": [ "///2/215", "///2/217" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop", "alpha": -57.970, "beta": 163.438, "gamma": 55.238, "delta": 81.154, "epsilon": -134.665, "zeta": -63.786, "epsilon_zeta": -70.879, "bb_type": "BI", "chi": -157.856, "glyco_bond": "anti", "C5prime_xyz": [ -1.297, 8.776, 0.399 ], "P_xyz": [ 1.305, 9.059, 0.233 ], "form": ".", "ssZp": 4.310, "Dp": 4.702, "splay_angle": 40.546, "splay_distance": 6.346, "splay_ratio": 0.346, "d22": null, "d64": null, "eta": 171.670, "theta": -124.692, "eta_prime": -174.578, "theta_prime": -124.885, "eta_base": -133.065, "theta_base": -92.122, "v0": 2.543, "v1": -24.536, "v2": 36.021, "v3": -35.513, "v4": 20.800, "amplitude": 37.252, "phase_angle": 14.773, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.907, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 244.917, 152.449, 115.242 ], "x_axis": [ 0.129, 0.380, -0.916 ], "y_axis": [ -0.944, -0.236, -0.230 ], "z_axis": [ -0.304, 0.895, 0.328 ], "quaternion": [ 0.552, -0.509, 0.277, 0.599 ] } }, { "index": 207, "index_chain": 207, "chain_name": "2", "nt_resnum": 217, "nt_name": "A", "nt_code": "A", "nt_id": "///2/217", "linked_nts": [ "///2/216", "///2/218" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -63.676, "beta": -166.598, "gamma": 33.576, "delta": 80.180, "epsilon": -134.733, "zeta": -80.202, "epsilon_zeta": -54.531, "bb_type": "BI", "chi": 169.894, "glyco_bond": "anti", "C5prime_xyz": [ -1.727, 8.156, 2.174 ], "P_xyz": [ 0.040, 8.185, 4.112 ], "form": ".", "ssZp": 4.633, "Dp": 4.698, "splay_angle": 29.809, "splay_distance": 4.850, "splay_ratio": 0.269, "d22": null, "d64": null, "eta": 162.004, "theta": -148.543, "eta_prime": 175.618, "theta_prime": -138.682, "eta_base": -134.825, "theta_base": -119.076, "v0": 1.989, "v1": -24.197, "v2": 35.987, "v3": -35.845, "v4": 21.346, "amplitude": 37.371, "phase_angle": 15.639, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.340, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 242.943, 158.135, 113.231 ], "x_axis": [ 0.017, -0.667, -0.744 ], "y_axis": [ -0.381, -0.693, 0.613 ], "z_axis": [ -0.925, 0.273, -0.266 ], "quaternion": [ 0.121, 0.703, -0.373, -0.594 ] } }, { "index": 208, "index_chain": 208, "chain_name": "2", "nt_resnum": 218, "nt_name": "U", "nt_code": "U", "nt_id": "///2/218", "linked_nts": [ "///2/217", "///2/219" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -57.745, "beta": -176.231, "gamma": 49.153, "delta": 81.730, "epsilon": -154.650, "zeta": -70.071, "epsilon_zeta": -84.579, "bb_type": "BI", "chi": -165.422, "glyco_bond": "anti", "C5prime_xyz": [ -1.819, 8.797, 0.785 ], "P_xyz": [ 0.457, 9.569, 1.824 ], "form": "A", "ssZp": 4.258, "Dp": 4.387, "splay_angle": 23.484, "splay_distance": 3.779, "splay_ratio": 0.204, "d22": 4.313, "d64": 4.160, "eta": 176.461, "theta": -148.094, "eta_prime": -173.769, "theta_prime": -145.406, "eta_base": -152.046, "theta_base": -110.781, "v0": -3.499, "v1": -18.584, "v2": 32.219, "v3": -35.175, "v4": 24.410, "amplitude": 35.315, "phase_angle": 24.169, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.816, "filter_rmsd": 0.106, "frame": { "rmsd": 0.006, "origin": [ 240.923, 161.536, 110.425 ], "x_axis": [ -0.046, -0.932, -0.359 ], "y_axis": [ -0.282, -0.333, 0.900 ], "z_axis": [ -0.958, 0.142, -0.248 ], "quaternion": [ 0.306, 0.619, -0.490, -0.532 ] } }, { "index": 209, "index_chain": 209, "chain_name": "2", "nt_resnum": 219, "nt_name": "U", "nt_code": "U", "nt_id": "///2/219", "linked_nts": [ "///2/218", "///2/220" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -64.236, "beta": 178.000, "gamma": 46.410, "delta": 80.761, "epsilon": -150.234, "zeta": -86.282, "epsilon_zeta": -63.951, "bb_type": "BI", "chi": -160.465, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.764, 0.566 ], "P_xyz": [ 1.049, 9.293, 1.195 ], "form": ".", "ssZp": 4.371, "Dp": 4.568, "splay_angle": 27.657, "splay_distance": 4.415, "splay_ratio": 0.240, "d22": 4.680, "d64": 5.028, "eta": 166.198, "theta": -157.687, "eta_prime": 178.844, "theta_prime": -154.995, "eta_base": -134.858, "theta_base": -139.128, "v0": 0.685, "v1": -22.785, "v2": 35.025, "v3": -35.619, "v4": 22.034, "amplitude": 36.744, "phase_angle": 17.594, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.888, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 237.847, 161.641, 108.231 ], "x_axis": [ -0.118, -0.952, 0.284 ], "y_axis": [ -0.160, 0.300, 0.940 ], "z_axis": [ -0.980, 0.065, -0.188 ], "quaternion": [ -0.499, -0.439, 0.634, 0.397 ] } }, { "index": 210, "index_chain": 210, "chain_name": "2", "nt_resnum": 220, "nt_name": "U", "nt_code": "U", "nt_id": "///2/220", "linked_nts": [ "///2/219", "///2/221" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -46.955, "beta": 164.412, "gamma": 46.353, "delta": 79.133, "epsilon": -143.338, "zeta": -76.106, "epsilon_zeta": -67.232, "bb_type": "BI", "chi": -165.518, "glyco_bond": "anti", "C5prime_xyz": [ -1.601, 8.734, 0.849 ], "P_xyz": [ 0.924, 9.256, 1.281 ], "form": "A", "ssZp": 4.504, "Dp": 4.631, "splay_angle": 22.640, "splay_distance": 3.551, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 174.451, "theta": -143.909, "eta_prime": -177.578, "theta_prime": -142.760, "eta_base": -154.131, "theta_base": -104.550, "v0": 0.105, "v1": -23.091, "v2": 36.034, "v3": -36.978, "v4": 23.223, "amplitude": 37.987, "phase_angle": 18.453, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.609, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 234.291, 161.943, 105.632 ], "x_axis": [ -0.049, -0.781, 0.622 ], "y_axis": [ -0.022, 0.623, 0.782 ], "z_axis": [ -0.999, 0.024, -0.048 ], "quaternion": [ 0.618, 0.306, -0.656, -0.307 ] } }, { "index": 211, "index_chain": 211, "chain_name": "2", "nt_resnum": 221, "nt_name": "A", "nt_code": "A", "nt_id": "///2/221", "linked_nts": [ "///2/220", "///2/222" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -55.998, "beta": 164.459, "gamma": 46.113, "delta": 78.498, "epsilon": -146.132, "zeta": -85.568, "epsilon_zeta": -60.563, "bb_type": "BI", "chi": -170.299, "glyco_bond": "anti", "C5prime_xyz": [ -1.437, 8.587, 1.108 ], "P_xyz": [ 1.127, 8.962, 1.470 ], "form": "A", "ssZp": 4.657, "Dp": 4.702, "splay_angle": 25.214, "splay_distance": 3.995, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 161.542, "theta": -155.254, "eta_prime": 176.342, "theta_prime": -153.352, "eta_base": -127.731, "theta_base": -141.933, "v0": 3.271, "v1": -26.213, "v2": 37.992, "v3": -37.117, "v4": 21.322, "amplitude": 39.139, "phase_angle": 13.908, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.826, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 231.133, 160.339, 105.869 ], "x_axis": [ 0.106, -0.205, 0.973 ], "y_axis": [ -0.000, 0.979, 0.206 ], "z_axis": [ -0.994, -0.022, 0.104 ], "quaternion": [ 0.740, 0.077, -0.665, -0.069 ] } }, { "index": 212, "index_chain": 212, "chain_name": "2", "nt_resnum": 222, "nt_name": "U", "nt_code": "U", "nt_id": "///2/222", "linked_nts": [ "///2/221", "///2/223" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -51.921, "beta": 167.179, "gamma": 50.800, "delta": 79.997, "epsilon": -154.890, "zeta": -73.669, "epsilon_zeta": -81.221, "bb_type": "BI", "chi": -168.076, "glyco_bond": "anti", "C5prime_xyz": [ -1.626, 8.690, 0.992 ], "P_xyz": [ 0.899, 9.226, 1.424 ], "form": "A", "ssZp": 4.524, "Dp": 4.565, "splay_angle": 23.562, "splay_distance": 3.743, "splay_ratio": 0.207, "d22": 4.528, "d64": 4.571, "eta": 172.833, "theta": -150.993, "eta_prime": -178.193, "theta_prime": -150.563, "eta_base": -156.423, "theta_base": -127.744, "v0": 0.361, "v1": -23.035, "v2": 35.644, "v3": -36.426, "v4": 22.728, "amplitude": 37.490, "phase_angle": 18.054, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.743, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 227.943, 157.990, 105.352 ], "x_axis": [ 0.253, 0.192, 0.948 ], "y_axis": [ -0.065, 0.981, -0.182 ], "z_axis": [ -0.965, -0.016, 0.260 ], "quaternion": [ 0.790, -0.053, -0.606, 0.081 ] } }, { "index": 213, "index_chain": 213, "chain_name": "2", "nt_resnum": 223, "nt_name": "C", "nt_code": "C", "nt_id": "///2/223", "linked_nts": [ "///2/222", "///2/224" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end", "alpha": -63.716, "beta": 179.046, "gamma": 50.478, "delta": 81.037, "epsilon": -153.710, "zeta": -75.493, "epsilon_zeta": -78.217, "bb_type": "BI", "chi": -164.766, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.757, 0.815 ], "P_xyz": [ 1.178, 9.170, 1.451 ], "form": "A", "ssZp": 4.469, "Dp": 4.563, "splay_angle": 21.095, "splay_distance": 3.332, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 170.341, "theta": -151.970, "eta_prime": -179.752, "theta_prime": -150.933, "eta_base": -144.776, "theta_base": -129.710, "v0": 1.215, "v1": -23.230, "v2": 35.180, "v3": -35.456, "v4": 21.597, "amplitude": 36.741, "phase_angle": 16.760, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.950, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 225.044, 156.171, 106.868 ], "x_axis": [ 0.304, 0.684, 0.663 ], "y_axis": [ -0.192, 0.726, -0.661 ], "z_axis": [ -0.933, 0.073, 0.352 ], "quaternion": [ 0.771, -0.238, -0.517, 0.284 ] } }, { "index": 214, "index_chain": 214, "chain_name": "2", "nt_resnum": 224, "nt_name": "A", "nt_code": "A", "nt_id": "///2/224", "linked_nts": [ "///2/223", "///2/225" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -62.376, "beta": 170.810, "gamma": 50.713, "delta": 80.991, "epsilon": -123.389, "zeta": -100.377, "epsilon_zeta": -23.012, "bb_type": "--", "chi": -167.012, "glyco_bond": "anti", "C5prime_xyz": [ -1.438, 8.653, 0.937 ], "P_xyz": [ 1.114, 9.049, 1.388 ], "form": ".", "ssZp": 4.495, "Dp": 4.722, "splay_angle": 25.642, "splay_distance": 3.962, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 172.222, "theta": -149.394, "eta_prime": -179.314, "theta_prime": -143.527, "eta_base": -148.552, "theta_base": -107.452, "v0": 1.870, "v1": -23.895, "v2": 35.604, "v3": -35.524, "v4": 21.234, "amplitude": 37.001, "phase_angle": 15.793, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.958, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 222.575, 155.290, 108.925 ], "x_axis": [ 0.279, 0.934, 0.221 ], "y_axis": [ -0.340, 0.312, -0.887 ], "z_axis": [ -0.898, 0.172, 0.405 ], "quaternion": [ 0.706, -0.375, -0.396, 0.451 ] } }, { "index": 215, "index_chain": 215, "chain_name": "2", "nt_resnum": 225, "nt_name": "G", "nt_code": "G", "nt_id": "///2/225", "linked_nts": [ "///2/224", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop", "alpha": -51.028, "beta": 138.757, "gamma": 60.715, "delta": 81.688, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -167.525, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.635, 0.968 ], "P_xyz": [ 1.250, 8.631, 0.328 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 4.406, "v1": -26.080, "v2": 36.680, "v3": -35.139, "v4": 19.414, "amplitude": 37.504, "phase_angle": 12.034, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.870, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 219.657, 156.951, 111.028 ], "x_axis": [ 0.054, 0.931, -0.361 ], "y_axis": [ -0.486, -0.291, -0.824 ], "z_axis": [ -0.872, 0.220, 0.437 ], "quaternion": [ 0.548, -0.477, -0.234, 0.647 ] } }, { "index": 216, "index_chain": 216, "chain_name": "2", "nt_resnum": 287, "nt_name": "U", "nt_code": "U", "nt_id": "///2/287", "linked_nts": [ null, "///2/288" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop", "alpha": null, "beta": -170.520, "gamma": 171.800, "delta": 82.101, "epsilon": -144.857, "zeta": -67.366, "epsilon_zeta": -77.491, "bb_type": "BI", "chi": -160.438, "glyco_bond": "anti", "C5prime_xyz": [ -1.409, 8.721, 0.549 ], "P_xyz": [ -0.107, 10.308, -1.082 ], "form": ".", "ssZp": 4.409, "Dp": 4.633, "splay_angle": 31.252, "splay_distance": 4.823, "splay_ratio": 0.269, "d22": null, "d64": null, "eta": null, "theta": -140.078, "eta_prime": null, "theta_prime": -138.880, "eta_base": null, "theta_base": -89.965, "v0": 1.869, "v1": -23.477, "v2": 34.928, "v3": -34.836, "v4": 20.801, "amplitude": 36.289, "phase_angle": 15.737, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 223.408, 149.535, 115.715 ], "x_axis": [ -0.251, 0.957, -0.142 ], "y_axis": [ -0.707, -0.282, -0.648 ], "z_axis": [ -0.661, -0.062, 0.748 ], "quaternion": [ 0.551, -0.266, -0.235, 0.755 ] } }, { "index": 217, "index_chain": 217, "chain_name": "2", "nt_resnum": 288, "nt_name": "G", "nt_code": "G", "nt_id": "///2/288", "linked_nts": [ "///2/287", "///2/289" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -139.824, "beta": -144.210, "gamma": 88.347, "delta": 82.641, "epsilon": -158.787, "zeta": -76.937, "epsilon_zeta": -81.850, "bb_type": "BI", "chi": -155.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.338, 8.767, 0.290 ], "P_xyz": [ 1.287, 8.785, 0.311 ], "form": "A", "ssZp": 4.311, "Dp": 4.548, "splay_angle": 25.083, "splay_distance": 3.993, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 141.363, "theta": -149.495, "eta_prime": 167.282, "theta_prime": -151.922, "eta_base": -128.143, "theta_base": -141.691, "v0": 2.924, "v1": -24.339, "v2": 35.303, "v3": -34.571, "v4": 19.968, "amplitude": 36.399, "phase_angle": 14.092, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 219.586, 152.385, 116.445 ], "x_axis": [ -0.196, 0.140, -0.971 ], "y_axis": [ -0.341, -0.938, -0.067 ], "z_axis": [ -0.919, 0.318, 0.232 ], "quaternion": [ 0.157, -0.614, 0.082, 0.769 ] } }, { "index": 218, "index_chain": 218, "chain_name": "2", "nt_resnum": 289, "nt_name": "G", "nt_code": "G", "nt_id": "///2/289", "linked_nts": [ "///2/288", "///2/290" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -62.682, "beta": 176.945, "gamma": 54.572, "delta": 81.380, "epsilon": -151.795, "zeta": -89.261, "epsilon_zeta": -62.534, "bb_type": "BI", "chi": -149.514, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.800, -0.101 ], "P_xyz": [ 1.251, 9.240, -0.186 ], "form": "A", "ssZp": 4.104, "Dp": 4.602, "splay_angle": 25.805, "splay_distance": 4.104, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 174.997, "theta": -161.741, "eta_prime": -176.682, "theta_prime": -161.108, "eta_base": -155.007, "theta_base": -149.331, "v0": 2.155, "v1": -23.930, "v2": 35.427, "v3": -35.166, "v4": 20.823, "amplitude": 36.735, "phase_angle": 15.337, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.907, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 216.865, 154.987, 117.776 ], "x_axis": [ -0.295, -0.250, -0.922 ], "y_axis": [ -0.323, -0.882, 0.343 ], "z_axis": [ -0.899, 0.399, 0.180 ], "quaternion": [ 0.024, -0.593, 0.242, 0.768 ] } }, { "index": 219, "index_chain": 219, "chain_name": "2", "nt_resnum": 290, "nt_name": "U", "nt_code": "U", "nt_id": "///2/290", "linked_nts": [ "///2/289", "///2/291" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -56.677, "beta": 155.305, "gamma": 61.351, "delta": 79.767, "epsilon": -105.448, "zeta": -132.799, "epsilon_zeta": 27.351, "bb_type": "--", "chi": -157.107, "glyco_bond": "anti", "C5prime_xyz": [ -1.457, 8.758, 0.336 ], "P_xyz": [ 1.073, 9.089, -0.249 ], "form": ".", "ssZp": 4.011, "Dp": 4.756, "splay_angle": 93.007, "splay_distance": 12.535, "splay_ratio": 0.729, "d22": null, "d64": null, "eta": -177.243, "theta": -116.200, "eta_prime": -172.431, "theta_prime": -153.283, "eta_base": -156.659, "theta_base": 141.087, "v0": 2.144, "v1": -24.859, "v2": 36.863, "v3": -36.590, "v4": 21.746, "amplitude": 38.243, "phase_angle": 15.439, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.634, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 213.918, 157.677, 118.734 ], "x_axis": [ -0.366, -0.513, -0.777 ], "y_axis": [ -0.265, -0.743, 0.615 ], "z_axis": [ -0.892, 0.431, 0.136 ], "quaternion": [ -0.083, -0.557, 0.349, 0.749 ] } }, { "index": 220, "index_chain": 220, "chain_name": "2", "nt_resnum": 291, "nt_name": "G", "nt_code": "G", "nt_id": "///2/291", "linked_nts": [ "///2/290", "///2/292" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 142.023, "beta": -111.787, "gamma": 50.900, "delta": 88.803, "epsilon": -178.010, "zeta": -91.018, "epsilon_zeta": -86.992, "bb_type": "BI", "chi": -80.213, "glyco_bond": "--", "C5prime_xyz": [ -1.926, 6.579, -3.275 ], "P_xyz": [ 0.683, 6.934, -3.349 ], "form": ".", "ssZp": 0.067, "Dp": 4.410, "splay_angle": 20.381, "splay_distance": 3.542, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 40.804, "theta": -137.436, "eta_prime": 61.547, "theta_prime": -145.360, "eta_base": 31.414, "theta_base": -150.444, "v0": 12.965, "v1": -29.371, "v2": 33.898, "v3": -27.364, "v4": 9.198, "amplitude": 33.950, "phase_angle": 356.832, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 211.072, 160.317, 130.653 ], "x_axis": [ 0.822, -0.542, 0.175 ], "y_axis": [ -0.114, -0.457, -0.882 ], "z_axis": [ 0.558, 0.705, -0.438 ], "quaternion": [ -0.481, 0.824, -0.199, 0.222 ] } }, { "index": 221, "index_chain": 221, "chain_name": "2", "nt_resnum": 292, "nt_name": "A", "nt_code": "A", "nt_id": "///2/292", "linked_nts": [ "///2/291", "///2/293" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,phosphate", "alpha": 155.489, "beta": -137.720, "gamma": 158.751, "delta": 81.818, "epsilon": -105.849, "zeta": -100.058, "epsilon_zeta": -5.792, "bb_type": "--", "chi": -111.560, "glyco_bond": "anti", "C5prime_xyz": [ -1.794, 8.107, -2.170 ], "P_xyz": [ -1.004, 7.213, -4.501 ], "form": ".", "ssZp": 1.034, "Dp": 4.714, "splay_angle": 53.875, "splay_distance": 8.600, "splay_ratio": 0.459, "d22": null, "d64": null, "eta": 164.595, "theta": -125.734, "eta_prime": 173.970, "theta_prime": -132.957, "eta_base": 177.026, "theta_base": -105.679, "v0": 2.529, "v1": -23.984, "v2": 35.154, "v3": -34.688, "v4": 20.299, "amplitude": 36.351, "phase_angle": 14.745, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.185, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 212.507, 161.558, 127.662 ], "x_axis": [ 0.752, -0.617, 0.232 ], "y_axis": [ 0.018, -0.333, -0.943 ], "z_axis": [ 0.659, 0.713, -0.240 ], "quaternion": [ 0.543, -0.762, 0.196, -0.292 ] } }, { "index": 222, "index_chain": 222, "chain_name": "2", "nt_resnum": 293, "nt_name": "C", "nt_code": "C", "nt_id": "///2/293", "linked_nts": [ "///2/292", "///2/294" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 66.833, "beta": -161.200, "gamma": -58.971, "delta": 147.167, "epsilon": -128.415, "zeta": -134.171, "epsilon_zeta": 5.756, "bb_type": "--", "chi": 54.117, "glyco_bond": "syn", "C5prime_xyz": [ -5.444, 4.086, 0.871 ], "P_xyz": [ -7.916, 3.209, 0.947 ], "form": ".", "ssZp": -1.530, "Dp": 1.532, "splay_angle": 109.574, "splay_distance": 16.231, "splay_ratio": 0.817, "d22": 8.903, "d64": 11.553, "eta": -146.114, "theta": -144.636, "eta_prime": -133.180, "theta_prime": 178.679, "eta_base": -118.266, "theta_base": 144.572, "v0": -21.860, "v1": 36.214, "v2": -35.895, "v3": 24.206, "v4": -1.661, "amplitude": 37.389, "phase_angle": 163.747, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.624, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 218.650, 157.435, 123.277 ], "x_axis": [ 0.798, 0.125, 0.590 ], "y_axis": [ 0.219, 0.851, -0.477 ], "z_axis": [ -0.561, 0.510, 0.652 ], "quaternion": [ 0.908, -0.271, -0.317, -0.026 ] } }, { "index": 223, "index_chain": 223, "chain_name": "2", "nt_resnum": 294, "nt_name": "U", "nt_code": "U", "nt_id": "///2/294", "linked_nts": [ "///2/293", "///2/295" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,hairpin-loop,phosphate,splayed-apart", "alpha": 114.199, "beta": -142.035, "gamma": 52.748, "delta": 145.095, "epsilon": -92.957, "zeta": -66.243, "epsilon_zeta": -26.714, "bb_type": "--", "chi": -124.339, "glyco_bond": "anti", "C5prime_xyz": [ -1.925, 8.587, -1.015 ], "P_xyz": [ -0.110, 9.769, 0.471 ], "form": ".", "ssZp": 0.772, "Dp": 0.839, "splay_angle": 152.121, "splay_distance": 18.349, "splay_ratio": 0.971, "d22": 10.024, "d64": 12.593, "eta": 31.773, "theta": -39.501, "eta_prime": 60.774, "theta_prime": -58.802, "eta_base": 55.150, "theta_base": -14.639, "v0": -21.604, "v1": 35.168, "v2": -34.575, "v3": 23.022, "v4": -1.099, "amplitude": 36.166, "phase_angle": 162.942, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.024, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 222.064, 171.163, 115.318 ], "x_axis": [ -0.834, 0.550, -0.046 ], "y_axis": [ -0.546, -0.834, -0.078 ], "z_axis": [ -0.082, -0.040, 0.996 ], "quaternion": [ 0.286, -0.033, -0.031, 0.957 ] } }, { "index": 224, "index_chain": 224, "chain_name": "2", "nt_resnum": 295, "nt_name": "C", "nt_code": "C", "nt_id": "///2/295", "linked_nts": [ "///2/294", "///2/296" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,cap-donor,splayed-apart", "alpha": -72.059, "beta": -137.311, "gamma": 59.134, "delta": 80.399, "epsilon": -150.872, "zeta": -68.975, "epsilon_zeta": -81.896, "bb_type": "BI", "chi": 178.032, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.398, 1.791 ], "P_xyz": [ 0.726, 8.035, 3.382 ], "form": "A", "ssZp": 4.621, "Dp": 4.644, "splay_angle": 26.221, "splay_distance": 4.037, "splay_ratio": 0.231, "d22": 4.753, "d64": 4.868, "eta": -178.217, "theta": -143.446, "eta_prime": -141.250, "theta_prime": -137.700, "eta_base": -147.343, "theta_base": -113.816, "v0": 3.663, "v1": -25.838, "v2": 36.970, "v3": -35.819, "v4": 20.268, "amplitude": 37.966, "phase_angle": 13.151, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.587, "filter_rmsd": 0.068, "frame": { "rmsd": 0.006, "origin": [ 218.799, 153.155, 116.636 ], "x_axis": [ -0.566, 0.269, -0.779 ], "y_axis": [ 0.173, 0.963, 0.206 ], "z_axis": [ 0.806, -0.018, -0.592 ], "quaternion": [ 0.449, 0.125, 0.883, 0.053 ] } }, { "index": 225, "index_chain": 225, "chain_name": "2", "nt_resnum": 296, "nt_name": "U", "nt_code": "U", "nt_id": "///2/296", "linked_nts": [ "///2/295", "///2/297" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop", "alpha": -74.166, "beta": -170.782, "gamma": 53.893, "delta": 81.050, "epsilon": -142.830, "zeta": -56.923, "epsilon_zeta": -85.907, "bb_type": "BI", "chi": -170.548, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.561, 1.149 ], "P_xyz": [ 1.162, 8.847, 1.934 ], "form": ".", "ssZp": 4.646, "Dp": 4.699, "splay_angle": 29.765, "splay_distance": 4.566, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 170.657, "theta": -127.109, "eta_prime": -179.355, "theta_prime": -122.705, "eta_base": -145.663, "theta_base": -73.335, "v0": 4.248, "v1": -26.221, "v2": 37.014, "v3": -35.537, "v4": 19.716, "amplitude": 37.880, "phase_angle": 12.274, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.848, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 220.987, 150.951, 114.055 ], "x_axis": [ -0.426, 0.751, -0.505 ], "y_axis": [ 0.403, 0.657, 0.637 ], "z_axis": [ 0.810, 0.068, -0.583 ], "quaternion": [ 0.403, 0.353, 0.816, 0.216 ] } }, { "index": 226, "index_chain": 226, "chain_name": "2", "nt_resnum": 297, "nt_name": "A", "nt_code": "A", "nt_id": "///2/297", "linked_nts": [ "///2/296", "///2/298" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -74.000, "beta": 169.025, "gamma": 62.520, "delta": 79.882, "epsilon": -144.909, "zeta": -70.029, "epsilon_zeta": -74.879, "bb_type": "BI", "chi": -174.318, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.498, 1.341 ], "P_xyz": [ 1.168, 8.881, 1.472 ], "form": ".", "ssZp": 4.700, "Dp": 4.708, "splay_angle": 34.905, "splay_distance": 5.419, "splay_ratio": 0.304, "d22": null, "d64": null, "eta": 160.406, "theta": -139.852, "eta_prime": -173.831, "theta_prime": -138.404, "eta_base": -99.371, "theta_base": -116.298, "v0": 4.160, "v1": -26.651, "v2": 37.800, "v3": -36.372, "v4": 20.307, "amplitude": 38.723, "phase_angle": 12.536, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.734, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 222.204, 153.839, 110.735 ], "x_axis": [ 0.034, 0.974, 0.224 ], "y_axis": [ 0.592, -0.201, 0.780 ], "z_axis": [ 0.805, 0.106, -0.584 ], "quaternion": [ 0.250, 0.674, 0.581, 0.382 ] } }, { "index": 227, "index_chain": 227, "chain_name": "2", "nt_resnum": 298, "nt_name": "G", "nt_code": "G", "nt_id": "///2/298", "linked_nts": [ "///2/297", "///2/299" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end", "alpha": -60.345, "beta": -179.634, "gamma": 57.197, "delta": 79.007, "epsilon": -133.945, "zeta": -80.881, "epsilon_zeta": -53.064, "bb_type": "BI", "chi": -177.102, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.581, 1.484 ], "P_xyz": [ 0.782, 9.074, 2.282 ], "form": "A", "ssZp": 4.689, "Dp": 4.701, "splay_angle": 21.893, "splay_distance": 3.491, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": -178.930, "theta": -144.042, "eta_prime": -166.806, "theta_prime": -140.674, "eta_base": -130.862, "theta_base": -110.397, "v0": 0.762, "v1": -23.669, "v2": 36.275, "v3": -36.858, "v4": 22.760, "amplitude": 38.034, "phase_angle": 17.493, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.945, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 224.974, 156.140, 106.686 ], "x_axis": [ 0.243, 0.682, 0.690 ], "y_axis": [ 0.252, -0.731, 0.634 ], "z_axis": [ 0.937, 0.020, -0.349 ], "quaternion": [ 0.201, 0.762, 0.306, 0.534 ] } }, { "index": 228, "index_chain": 228, "chain_name": "2", "nt_resnum": 299, "nt_name": "A", "nt_code": "A", "nt_id": "///2/299", "linked_nts": [ "///2/298", "///2/300" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -64.544, "beta": 167.524, "gamma": 53.738, "delta": 79.664, "epsilon": -149.387, "zeta": -79.518, "epsilon_zeta": -69.869, "bb_type": "BI", "chi": -166.625, "glyco_bond": "anti", "C5prime_xyz": [ -1.626, 8.683, 0.887 ], "P_xyz": [ 0.920, 9.250, 1.111 ], "form": "A", "ssZp": 4.556, "Dp": 4.631, "splay_angle": 26.223, "splay_distance": 4.110, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 161.895, "theta": -152.173, "eta_prime": 175.745, "theta_prime": -150.250, "eta_base": -140.005, "theta_base": -127.650, "v0": 1.002, "v1": -23.801, "v2": 36.250, "v3": -36.672, "v4": 22.492, "amplitude": 37.930, "phase_angle": 17.118, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.833, "filter_rmsd": 0.037, "frame": { "rmsd": 0.005, "origin": [ 227.586, 158.090, 105.436 ], "x_axis": [ 0.210, 0.109, 0.972 ], "y_axis": [ 0.143, -0.986, 0.080 ], "z_axis": [ 0.967, 0.122, -0.223 ], "quaternion": [ -0.014, 0.778, 0.081, 0.623 ] } }, { "index": 229, "index_chain": 229, "chain_name": "2", "nt_resnum": 300, "nt_name": "U", "nt_code": "U", "nt_id": "///2/300", "linked_nts": [ "///2/299", "///2/301" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -60.720, "beta": 170.290, "gamma": 58.603, "delta": 80.941, "epsilon": -145.788, "zeta": -69.663, "epsilon_zeta": -76.126, "bb_type": "BI", "chi": -160.631, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.725, 0.557 ], "P_xyz": [ 1.156, 9.169, 0.521 ], "form": "A", "ssZp": 4.439, "Dp": 4.650, "splay_angle": 20.119, "splay_distance": 3.320, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 175.109, "theta": -139.725, "eta_prime": -173.978, "theta_prime": -139.816, "eta_base": -140.727, "theta_base": -129.435, "v0": 2.098, "v1": -24.278, "v2": 35.984, "v3": -35.766, "v4": 21.219, "amplitude": 37.333, "phase_angle": 15.450, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.908, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 231.029, 160.292, 105.000 ], "x_axis": [ 0.257, -0.408, 0.876 ], "y_axis": [ 0.051, -0.899, -0.434 ], "z_axis": [ 0.965, 0.157, -0.211 ], "quaternion": [ -0.192, 0.769, -0.116, 0.598 ] } }, { "index": 230, "index_chain": 230, "chain_name": "2", "nt_resnum": 301, "nt_name": "A", "nt_code": "A", "nt_id": "///2/301", "linked_nts": [ "///2/300", "///2/302" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -75.449, "beta": -164.915, "gamma": 41.882, "delta": 81.479, "epsilon": -164.084, "zeta": -82.748, "epsilon_zeta": -81.337, "bb_type": "BI", "chi": -137.013, "glyco_bond": "anti", "C5prime_xyz": [ -1.549, 8.677, -0.839 ], "P_xyz": [ 0.900, 9.582, -0.614 ], "form": ".", "ssZp": 3.645, "Dp": 4.481, "splay_angle": 21.855, "splay_distance": 3.829, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 159.525, "theta": -135.312, "eta_prime": 169.536, "theta_prime": -140.568, "eta_base": -167.920, "theta_base": -126.764, "v0": 1.475, "v1": -23.162, "v2": 34.811, "v3": -34.946, "v4": 21.129, "amplitude": 36.279, "phase_angle": 16.354, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.626, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 233.823, 161.953, 105.680 ], "x_axis": [ -0.155, -0.811, 0.565 ], "y_axis": [ 0.196, -0.586, -0.786 ], "z_axis": [ 0.968, -0.011, 0.250 ], "quaternion": [ -0.357, 0.543, -0.283, 0.705 ] } }, { "index": 231, "index_chain": 231, "chain_name": "2", "nt_resnum": 302, "nt_name": "A", "nt_code": "A", "nt_id": "///2/302", "linked_nts": [ "///2/301", "///2/303" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": 144.896, "beta": -147.384, "gamma": -175.914, "delta": 80.063, "epsilon": -145.802, "zeta": -68.622, "epsilon_zeta": -77.180, "bb_type": "BI", "chi": -158.766, "glyco_bond": "anti", "C5prime_xyz": [ -1.568, 8.747, 0.414 ], "P_xyz": [ -0.550, 10.145, -1.561 ], "form": ".", "ssZp": 4.394, "Dp": 4.657, "splay_angle": 29.200, "splay_distance": 4.655, "splay_ratio": 0.253, "d22": null, "d64": null, "eta": 168.491, "theta": -164.801, "eta_prime": -176.219, "theta_prime": -160.238, "eta_base": -148.365, "theta_base": -123.142, "v0": 1.343, "v1": -24.145, "v2": 36.477, "v3": -36.682, "v4": 22.277, "amplitude": 38.064, "phase_angle": 16.602, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.723, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 236.659, 161.680, 108.237 ], "x_axis": [ -0.140, -0.947, 0.288 ], "y_axis": [ 0.398, -0.321, -0.860 ], "z_axis": [ 0.907, -0.006, 0.422 ], "quaternion": [ -0.490, 0.436, -0.315, 0.686 ] } }, { "index": 232, "index_chain": 232, "chain_name": "2", "nt_resnum": 303, "nt_name": "C", "nt_code": "C", "nt_id": "///2/303", "linked_nts": [ "///2/302", "///2/304" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -62.762, "beta": 163.620, "gamma": 69.419, "delta": 79.740, "epsilon": -119.379, "zeta": -80.635, "epsilon_zeta": -38.744, "bb_type": "--", "chi": -157.494, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.851, 0.347 ], "P_xyz": [ 1.000, 9.371, -0.212 ], "form": ".", "ssZp": 4.149, "Dp": 4.702, "splay_angle": 35.210, "splay_distance": 5.569, "splay_ratio": 0.304, "d22": 3.789, "d64": 3.871, "eta": -178.050, "theta": -128.389, "eta_prime": -160.925, "theta_prime": -123.046, "eta_base": -113.557, "theta_base": -74.512, "v0": -0.239, "v1": -22.658, "v2": 35.635, "v3": -36.757, "v4": 23.332, "amplitude": 37.678, "phase_angle": 18.956, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.564, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 239.555, 159.263, 110.964 ], "x_axis": [ 0.199, -0.927, -0.319 ], "y_axis": [ 0.465, 0.376, -0.802 ], "z_axis": [ 0.863, 0.012, 0.506 ], "quaternion": [ 0.721, -0.282, 0.409, -0.482 ] } }, { "index": 233, "index_chain": 233, "chain_name": "2", "nt_resnum": 304, "nt_name": "C", "nt_code": "C", "nt_id": "///2/304", "linked_nts": [ "///2/303", "///2/305" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": -51.306, "beta": 147.326, "gamma": 61.109, "delta": 82.290, "epsilon": -154.464, "zeta": 160.345, "epsilon_zeta": 45.191, "bb_type": "--", "chi": -158.271, "glyco_bond": "anti", "C5prime_xyz": [ -1.270, 8.766, 0.429 ], "P_xyz": [ 1.279, 8.828, -0.185 ], "form": ".", "ssZp": 4.373, "Dp": 4.577, "splay_angle": 101.025, "splay_distance": 13.653, "splay_ratio": 0.772, "d22": 8.525, "d64": 9.945, "eta": 161.654, "theta": 85.125, "eta_prime": -168.605, "theta_prime": 88.308, "eta_base": -99.621, "theta_base": 78.467, "v0": 2.430, "v1": -23.912, "v2": 35.089, "v3": -34.664, "v4": 20.347, "amplitude": 36.304, "phase_angle": 14.867, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.373, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 244.010, 156.291, 109.438 ], "x_axis": [ 0.301, -0.168, -0.939 ], "y_axis": [ 0.247, 0.964, -0.093 ], "z_axis": [ 0.921, -0.204, 0.332 ], "quaternion": [ 0.806, 0.034, 0.577, -0.129 ] } }, { "index": 234, "index_chain": 234, "chain_name": "2", "nt_resnum": 305, "nt_name": "U", "nt_code": "U", "nt_id": "///2/305", "linked_nts": [ "///2/304", "///2/306" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,internal-loop,splayed-apart", "alpha": -75.392, "beta": 140.938, "gamma": 55.727, "delta": 144.885, "epsilon": -95.316, "zeta": -91.410, "epsilon_zeta": -3.906, "bb_type": "--", "chi": -102.103, "glyco_bond": "anti", "C5prime_xyz": [ -2.397, 8.099, -2.078 ], "P_xyz": [ 0.183, 8.302, -2.515 ], "form": ".", "ssZp": 0.729, "Dp": 0.864, "splay_angle": 117.104, "splay_distance": 16.515, "splay_ratio": 0.854, "d22": 9.788, "d64": 11.342, "eta": -174.997, "theta": -19.690, "eta_prime": -157.330, "theta_prime": -49.315, "eta_base": -173.455, "theta_base": -14.456, "v0": -22.992, "v1": 36.158, "v2": -34.793, "v3": 22.441, "v4": 0.152, "amplitude": 36.796, "phase_angle": 161.005, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.363, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 242.834, 168.098, 116.193 ], "x_axis": [ -0.536, -0.817, 0.215 ], "y_axis": [ 0.818, -0.565, -0.109 ], "z_axis": [ 0.211, 0.117, 0.970 ], "quaternion": [ -0.466, 0.122, 0.002, 0.876 ] } }, { "index": 235, "index_chain": 235, "chain_name": "2", "nt_resnum": 306, "nt_name": "C", "nt_code": "C", "nt_id": "///2/306", "linked_nts": [ "///2/305", "///2/307" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -176.670, "beta": -137.737, "gamma": 173.699, "delta": 148.308, "epsilon": -75.943, "zeta": 104.098, "epsilon_zeta": 179.959, "bb_type": "--", "chi": -128.344, "glyco_bond": "anti", "C5prime_xyz": [ -1.805, 8.685, -0.749 ], "P_xyz": [ 0.352, 8.882, -2.229 ], "form": ".", "ssZp": 0.315, "Dp": 0.335, "splay_angle": 149.450, "splay_distance": 18.907, "splay_ratio": 0.965, "d22": null, "d64": null, "eta": -128.538, "theta": 64.567, "eta_prime": -107.408, "theta_prime": 40.998, "eta_base": -122.972, "theta_base": 22.833, "v0": -21.188, "v1": 35.946, "v2": -36.131, "v3": 24.818, "v4": -2.477, "amplitude": 37.409, "phase_angle": 164.979, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 256.965, 160.294, 112.705 ], "x_axis": [ -0.354, 0.101, -0.930 ], "y_axis": [ -0.214, 0.959, 0.186 ], "z_axis": [ 0.910, 0.264, -0.318 ], "quaternion": [ 0.567, -0.035, 0.811, 0.139 ] } }, { "index": 236, "index_chain": 236, "chain_name": "2", "nt_resnum": 307, "nt_name": "G", "nt_code": "G", "nt_id": "///2/307", "linked_nts": [ "///2/306", "///2/308" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,internal-loop,splayed-apart", "alpha": 152.509, "beta": 138.492, "gamma": 4.942, "delta": 147.760, "epsilon": -86.101, "zeta": -46.514, "epsilon_zeta": -39.588, "bb_type": "--", "chi": -109.098, "glyco_bond": "anti", "C5prime_xyz": [ -2.035, 8.340, -1.708 ], "P_xyz": [ 0.098, 9.495, -0.698 ], "form": ".", "ssZp": 0.445, "Dp": 0.599, "splay_angle": 131.139, "splay_distance": 18.069, "splay_ratio": 0.911, "d22": null, "d64": null, "eta": 30.992, "theta": -10.796, "eta_prime": 44.462, "theta_prime": -28.488, "eta_base": 51.003, "theta_base": -6.470, "v0": -20.560, "v1": 35.297, "v2": -35.701, "v3": 24.772, "v4": -2.854, "amplitude": 36.861, "phase_angle": 165.591, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 253.586, 174.791, 124.362 ], "x_axis": [ 0.697, 0.616, -0.367 ], "y_axis": [ 0.373, -0.749, -0.548 ], "z_axis": [ -0.613, 0.245, -0.751 ], "quaternion": [ -0.222, 0.894, 0.276, -0.274 ] } }, { "index": 237, "index_chain": 237, "chain_name": "2", "nt_resnum": 308, "nt_name": "G", "nt_code": "G", "nt_id": "///2/308", "linked_nts": [ "///2/307", "///2/309" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -79.709, "beta": -114.227, "gamma": 52.928, "delta": 144.898, "epsilon": -145.710, "zeta": -92.145, "epsilon_zeta": -53.565, "bb_type": "BI", "chi": -81.664, "glyco_bond": "anti", "C5prime_xyz": [ -2.901, 7.474, -2.727 ], "P_xyz": [ -1.006, 9.272, -2.455 ], "form": ".", "ssZp": 1.534, "Dp": 1.884, "splay_angle": 95.227, "splay_distance": 13.919, "splay_ratio": 0.740, "d22": null, "d64": null, "eta": 177.807, "theta": -69.290, "eta_prime": -139.923, "theta_prime": -136.276, "eta_base": -150.972, "theta_base": 179.832, "v0": -23.292, "v1": 36.605, "v2": -35.205, "v3": 22.640, "v4": 0.202, "amplitude": 37.249, "phase_angle": 160.929, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.331, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 257.548, 159.366, 115.826 ], "x_axis": [ 0.785, -0.082, 0.614 ], "y_axis": [ -0.552, 0.358, 0.753 ], "z_axis": [ -0.282, -0.930, 0.235 ], "quaternion": [ 0.771, 0.546, -0.291, 0.152 ] } }, { "index": 238, "index_chain": 238, "chain_name": "2", "nt_resnum": 309, "nt_name": "G", "nt_code": "G", "nt_id": "///2/309", "linked_nts": [ "///2/308", "///2/310" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,phosphate,splayed-apart", "alpha": 126.488, "beta": 127.650, "gamma": 66.226, "delta": 80.693, "epsilon": -160.899, "zeta": -79.696, "epsilon_zeta": -81.203, "bb_type": "BI", "chi": -166.791, "glyco_bond": "anti", "C5prime_xyz": [ -1.345, 8.651, 0.906 ], "P_xyz": [ 1.047, 8.631, -0.168 ], "form": ".", "ssZp": 4.570, "Dp": 4.601, "splay_angle": 26.870, "splay_distance": 4.239, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": -40.280, "theta": -151.119, "eta_prime": 24.137, "theta_prime": -163.012, "eta_base": 65.993, "theta_base": -165.355, "v0": 4.300, "v1": -26.582, "v2": 37.520, "v3": -36.039, "v4": 20.027, "amplitude": 38.402, "phase_angle": 12.303, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 244.323, 155.061, 115.285 ], "x_axis": [ 0.298, 0.514, -0.804 ], "y_axis": [ 0.452, 0.666, 0.594 ], "z_axis": [ 0.841, -0.541, -0.034 ], "quaternion": [ 0.695, 0.408, 0.592, 0.022 ] } }, { "index": 239, "index_chain": 239, "chain_name": "2", "nt_resnum": 310, "nt_name": "C", "nt_code": "C", "nt_id": "///2/310", "linked_nts": [ "///2/309", "///2/311" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -60.263, "beta": 172.052, "gamma": 60.218, "delta": 80.934, "epsilon": -143.479, "zeta": -70.566, "epsilon_zeta": -72.913, "bb_type": "BI", "chi": -165.723, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.771, 0.850 ], "P_xyz": [ 1.122, 9.242, 1.089 ], "form": ".", "ssZp": 4.492, "Dp": 4.613, "splay_angle": 29.021, "splay_distance": 4.551, "splay_ratio": 0.251, "d22": 4.351, "d64": 4.440, "eta": -179.724, "theta": -138.017, "eta_prime": -173.703, "theta_prime": -134.773, "eta_base": -161.465, "theta_base": -95.977, "v0": 0.178, "v1": -22.335, "v2": 34.716, "v3": -35.592, "v4": 22.335, "amplitude": 36.573, "phase_angle": 18.338, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.818, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 245.321, 150.975, 114.754 ], "x_axis": [ 0.416, 0.691, -0.592 ], "y_axis": [ 0.381, 0.459, 0.803 ], "z_axis": [ 0.826, -0.559, -0.073 ], "quaternion": [ 0.671, 0.507, 0.528, 0.115 ] } }, { "index": 240, "index_chain": 240, "chain_name": "2", "nt_resnum": 311, "nt_name": "C", "nt_code": "C", "nt_id": "///2/311", "linked_nts": [ "///2/310", "///2/312" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop,splayed-apart", "alpha": -60.914, "beta": 170.848, "gamma": 56.092, "delta": 82.306, "epsilon": -138.618, "zeta": 107.421, "epsilon_zeta": 113.960, "bb_type": "--", "chi": -157.879, "glyco_bond": "anti", "C5prime_xyz": [ -1.264, 8.763, 0.409 ], "P_xyz": [ 1.345, 9.052, 0.419 ], "form": ".", "ssZp": 4.329, "Dp": 4.673, "splay_angle": 147.432, "splay_distance": 18.911, "splay_ratio": 0.960, "d22": null, "d64": null, "eta": 172.799, "theta": 30.720, "eta_prime": -169.265, "theta_prime": 29.724, "eta_base": -115.933, "theta_base": 19.019, "v0": 2.562, "v1": -24.036, "v2": 35.201, "v3": -34.707, "v4": 20.285, "amplitude": 36.390, "phase_angle": 14.687, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.968, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 249.427, 150.253, 112.929 ], "x_axis": [ 0.543, 0.826, 0.151 ], "y_axis": [ -0.008, -0.175, 0.985 ], "z_axis": [ 0.840, -0.536, -0.088 ], "quaternion": [ 0.566, 0.672, 0.304, 0.368 ] } }, { "index": 241, "index_chain": 241, "chain_name": "2", "nt_resnum": 312, "nt_name": "G", "nt_code": "G", "nt_id": "///2/312", "linked_nts": [ "///2/311", "///2/313" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,splayed-apart", "alpha": -69.259, "beta": -152.401, "gamma": 29.560, "delta": 143.311, "epsilon": -112.432, "zeta": -126.127, "epsilon_zeta": 13.695, "bb_type": "--", "chi": -107.826, "glyco_bond": "anti", "C5prime_xyz": [ -2.477, 8.333, -1.820 ], "P_xyz": [ -0.996, 10.415, -1.217 ], "form": ".", "ssZp": 1.265, "Dp": 1.275, "splay_angle": 144.424, "splay_distance": 17.977, "splay_ratio": 0.952, "d22": null, "d64": null, "eta": -143.538, "theta": -103.188, "eta_prime": -114.610, "theta_prime": -142.040, "eta_base": -98.884, "theta_base": -144.048, "v0": -24.931, "v1": 37.453, "v2": -34.937, "v3": 21.473, "v4": 1.958, "amplitude": 37.611, "phase_angle": 158.263, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 251.201, 142.297, 129.993 ], "x_axis": [ -0.713, -0.697, -0.078 ], "y_axis": [ 0.052, 0.058, -0.997 ], "z_axis": [ 0.699, -0.715, -0.005 ], "quaternion": [ 0.292, -0.242, 0.666, -0.642 ] } }, { "index": 242, "index_chain": 242, "chain_name": "2", "nt_resnum": 313, "nt_name": "A", "nt_code": "A", "nt_id": "///2/313", "linked_nts": [ "///2/312", "///2/314" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-canonical,non-pair-contact,helix,bulge,phosphate,splayed-apart", "alpha": 56.710, "beta": 177.528, "gamma": 64.236, "delta": 146.726, "epsilon": -92.074, "zeta": -80.313, "epsilon_zeta": -11.760, "bb_type": "--", "chi": -77.630, "glyco_bond": "--", "C5prime_xyz": [ -2.981, 7.203, -2.831 ], "P_xyz": [ -0.659, 7.794, -3.909 ], "form": ".", "ssZp": 0.361, "Dp": 0.722, "splay_angle": 160.061, "splay_distance": 18.855, "splay_ratio": 0.985, "d22": null, "d64": null, "eta": -40.951, "theta": -57.525, "eta_prime": 5.461, "theta_prime": -79.969, "eta_base": 7.233, "theta_base": -21.704, "v0": -21.757, "v1": 35.838, "v2": -35.439, "v3": 23.832, "v4": -1.508, "amplitude": 36.956, "phase_angle": 163.526, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.384, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 264.758, 146.525, 118.970 ], "x_axis": [ -0.075, 0.974, -0.213 ], "y_axis": [ -0.670, 0.109, 0.734 ], "z_axis": [ 0.738, 0.198, 0.645 ], "quaternion": [ 0.648, 0.207, 0.367, 0.634 ] } }, { "index": 243, "index_chain": 243, "chain_name": "2", "nt_resnum": 314, "nt_name": "U", "nt_code": "U", "nt_id": "///2/314", "linked_nts": [ "///2/313", "///2/315" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": -56.800, "beta": -159.070, "gamma": 74.956, "delta": 81.102, "epsilon": -151.088, "zeta": -76.518, "epsilon_zeta": -74.570, "bb_type": "BI", "chi": -175.387, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.491, 1.424 ], "P_xyz": [ 1.115, 8.641, 2.045 ], "form": "A", "ssZp": 4.646, "Dp": 4.644, "splay_angle": 23.179, "splay_distance": 3.596, "splay_ratio": 0.205, "d22": 4.762, "d64": 4.797, "eta": -159.564, "theta": -148.874, "eta_prime": -120.073, "theta_prime": -147.676, "eta_base": -136.992, "theta_base": -128.776, "v0": 3.653, "v1": -25.679, "v2": 36.728, "v3": -35.603, "v4": 20.144, "amplitude": 37.718, "phase_angle": 13.153, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.269, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 253.647, 140.015, 132.742 ], "x_axis": [ -0.497, -0.363, -0.788 ], "y_axis": [ 0.649, 0.447, -0.615 ], "z_axis": [ 0.576, -0.818, 0.013 ], "quaternion": [ 0.491, 0.103, 0.695, -0.516 ] } }, { "index": 244, "index_chain": 244, "chain_name": "2", "nt_resnum": 315, "nt_name": "C", "nt_code": "C", "nt_id": "///2/315", "linked_nts": [ "///2/314", "///2/316" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper", "alpha": -70.468, "beta": 176.154, "gamma": 59.902, "delta": 81.916, "epsilon": -154.811, "zeta": -79.774, "epsilon_zeta": -75.037, "bb_type": "BI", "chi": -167.211, "glyco_bond": "anti", "C5prime_xyz": [ -1.250, 8.671, 0.958 ], "P_xyz": [ 1.344, 8.949, 1.247 ], "form": ".", "ssZp": 4.541, "Dp": 4.594, "splay_angle": 26.699, "splay_distance": 4.210, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 169.772, "theta": -155.835, "eta_prime": -179.075, "theta_prime": -155.237, "eta_base": -146.372, "theta_base": -148.428, "v0": 3.177, "v1": -24.850, "v2": 35.863, "v3": -34.996, "v4": 20.070, "amplitude": 36.923, "phase_angle": 13.765, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.901, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 253.929, 136.680, 134.058 ], "x_axis": [ -0.093, -0.067, -0.993 ], "y_axis": [ 0.845, 0.523, -0.115 ], "z_axis": [ 0.527, -0.850, 0.008 ], "quaternion": [ 0.599, 0.306, 0.634, -0.380 ] } }, { "index": 245, "index_chain": 245, "chain_name": "2", "nt_resnum": 316, "nt_name": "G", "nt_code": "G", "nt_id": "///2/316", "linked_nts": [ "///2/315", "///2/317" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,ribose-zipper", "alpha": -73.520, "beta": -179.365, "gamma": 59.533, "delta": 82.262, "epsilon": -159.100, "zeta": -76.308, "epsilon_zeta": -82.792, "bb_type": "BI", "chi": -164.358, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.743, 0.792 ], "P_xyz": [ 1.124, 9.184, 1.210 ], "form": "A", "ssZp": 4.435, "Dp": 4.515, "splay_angle": 22.281, "splay_distance": 3.568, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 170.629, "theta": -155.348, "eta_prime": 177.934, "theta_prime": -155.205, "eta_base": -165.538, "theta_base": -144.695, "v0": 1.509, "v1": -23.039, "v2": 34.539, "v3": -34.618, "v4": 20.884, "amplitude": 35.974, "phase_angle": 16.236, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.850, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 253.866, 132.722, 135.493 ], "x_axis": [ 0.115, 0.278, -0.954 ], "y_axis": [ 0.835, 0.493, 0.244 ], "z_axis": [ 0.538, -0.825, -0.175 ], "quaternion": [ 0.598, 0.447, 0.623, -0.233 ] } }, { "index": 246, "index_chain": 246, "chain_name": "2", "nt_resnum": 317, "nt_name": "C", "nt_code": "C", "nt_id": "///2/317", "linked_nts": [ "///2/316", "///2/318" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -65.415, "beta": 178.417, "gamma": 53.758, "delta": 83.159, "epsilon": -134.191, "zeta": -94.337, "epsilon_zeta": -39.854, "bb_type": "BI", "chi": -155.263, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.828, 0.246 ], "P_xyz": [ 1.187, 9.310, 0.569 ], "form": ".", "ssZp": 4.134, "Dp": 4.591, "splay_angle": 27.308, "splay_distance": 4.336, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 176.940, "theta": -149.291, "eta_prime": -176.936, "theta_prime": -143.394, "eta_base": -159.502, "theta_base": -102.235, "v0": 0.012, "v1": -21.122, "v2": 32.945, "v3": -33.878, "v4": 21.389, "amplitude": 34.762, "phase_angle": 18.605, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.902, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 253.643, 129.174, 135.187 ], "x_axis": [ 0.428, 0.491, -0.759 ], "y_axis": [ 0.771, 0.239, 0.590 ], "z_axis": [ 0.471, -0.838, -0.276 ], "quaternion": [ 0.590, 0.605, 0.521, -0.119 ] } }, { "index": 247, "index_chain": 247, "chain_name": "2", "nt_resnum": 318, "nt_name": "A", "nt_code": "A", "nt_id": "///2/318", "linked_nts": [ "///2/317", "///2/319" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -47.142, "beta": 148.883, "gamma": 52.152, "delta": 81.571, "epsilon": 175.871, "zeta": 56.669, "epsilon_zeta": 119.202, "bb_type": "--", "chi": -152.046, "glyco_bond": "anti", "C5prime_xyz": [ -1.010, 8.620, 0.062 ], "P_xyz": [ 1.534, 8.385, -0.521 ], "form": ".", "ssZp": 4.230, "Dp": 4.435, "splay_angle": 27.834, "splay_distance": 5.327, "splay_ratio": 0.265, "d22": null, "d64": null, "eta": 163.660, "theta": -77.102, "eta_prime": -173.491, "theta_prime": -116.799, "eta_base": -118.140, "theta_base": -146.304, "v0": 6.739, "v1": -27.670, "v2": 36.997, "v3": -34.133, "v4": 17.322, "amplitude": 37.409, "phase_angle": 8.514, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.402, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 256.685, 126.717, 133.312 ], "x_axis": [ 0.817, 0.546, -0.185 ], "y_axis": [ 0.344, -0.205, 0.916 ], "z_axis": [ 0.463, -0.812, -0.355 ], "quaternion": [ 0.561, 0.771, 0.289, 0.090 ] } }, { "index": 248, "index_chain": 248, "chain_name": "2", "nt_resnum": 319, "nt_name": "C", "nt_code": "C", "nt_id": "///2/319", "linked_nts": [ "///2/318", "///2/320" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -79.153, "beta": -55.716, "gamma": -90.966, "delta": 77.539, "epsilon": 177.929, "zeta": -85.937, "epsilon_zeta": -96.135, "bb_type": "BI", "chi": -147.135, "glyco_bond": "anti", "C5prime_xyz": [ -1.909, 8.906, -0.313 ], "P_xyz": [ -4.103, 10.404, -0.634 ], "form": "A", "ssZp": 4.046, "Dp": 4.299, "splay_angle": 21.645, "splay_distance": 3.665, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 174.551, "theta": 124.815, "eta_prime": 177.096, "theta_prime": 146.812, "eta_base": 167.271, "theta_base": 174.187, "v0": -3.937, "v1": -20.016, "v2": 34.865, "v3": -38.175, "v4": 26.582, "amplitude": 38.284, "phase_angle": 24.401, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 257.222, 124.188, 128.655 ], "x_axis": [ 0.747, 0.603, -0.281 ], "y_axis": [ 0.476, -0.190, 0.859 ], "z_axis": [ 0.464, -0.775, -0.429 ], "quaternion": [ 0.531, 0.769, 0.351, 0.060 ] } }, { "index": 249, "index_chain": 249, "chain_name": "2", "nt_resnum": 320, "nt_name": "G", "nt_code": "G", "nt_id": "///2/320", "linked_nts": [ "///2/319", "///2/321" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 153.081, "beta": -145.859, "gamma": 173.366, "delta": 81.782, "epsilon": -146.231, "zeta": -84.144, "epsilon_zeta": -62.087, "bb_type": "BI", "chi": -176.606, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.481, 1.492 ], "P_xyz": [ 0.372, 9.921, 0.164 ], "form": "A", "ssZp": 4.680, "Dp": 4.677, "splay_angle": 24.586, "splay_distance": 3.778, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 167.427, "theta": -171.278, "eta_prime": 179.458, "theta_prime": -171.280, "eta_base": -146.678, "theta_base": -152.389, "v0": 4.339, "v1": -25.851, "v2": 36.376, "v3": -34.860, "v4": 19.271, "amplitude": 37.198, "phase_angle": 12.071, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.584, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 258.011, 122.187, 125.687 ], "x_axis": [ 0.886, 0.462, 0.039 ], "y_axis": [ 0.197, -0.452, 0.870 ], "z_axis": [ 0.420, -0.763, -0.491 ], "quaternion": [ 0.486, 0.841, 0.196, 0.136 ] } }, { "index": 250, "index_chain": 250, "chain_name": "2", "nt_resnum": 321, "nt_name": "C", "nt_code": "C", "nt_id": "///2/321", "linked_nts": [ "///2/320", "///2/322" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -59.273, "beta": 167.848, "gamma": 56.413, "delta": 81.814, "epsilon": -157.478, "zeta": -66.821, "epsilon_zeta": -90.657, "bb_type": "BI", "chi": -169.470, "glyco_bond": "anti", "C5prime_xyz": [ -1.267, 8.639, 1.094 ], "P_xyz": [ 1.330, 8.855, 1.380 ], "form": ".", "ssZp": 4.536, "Dp": 4.570, "splay_angle": 38.825, "splay_distance": 5.904, "splay_ratio": 0.333, "d22": 3.638, "d64": 4.164, "eta": 171.589, "theta": -105.734, "eta_prime": -176.906, "theta_prime": -108.522, "eta_base": -146.678, "theta_base": -59.639, "v0": 3.159, "v1": -24.836, "v2": 35.857, "v3": -34.990, "v4": 20.086, "amplitude": 36.920, "phase_angle": 13.788, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.852, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 258.604, 120.653, 122.286 ], "x_axis": [ 0.875, 0.186, 0.447 ], "y_axis": [ -0.240, -0.635, 0.734 ], "z_axis": [ 0.420, -0.750, -0.511 ], "quaternion": [ 0.427, 0.869, -0.016, 0.250 ] } }, { "index": 251, "index_chain": 251, "chain_name": "2", "nt_resnum": 322, "nt_name": "C", "nt_code": "C", "nt_id": "///2/322", "linked_nts": [ "///2/321", "///2/323" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": 168.081, "beta": -136.458, "gamma": 147.368, "delta": 82.462, "epsilon": -156.971, "zeta": -84.486, "epsilon_zeta": -72.485, "bb_type": "BI", "chi": -179.340, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.449, 1.660 ], "P_xyz": [ 1.077, 8.968, 0.767 ], "form": ".", "ssZp": 4.494, "Dp": 4.548, "splay_angle": 41.067, "splay_distance": 6.360, "splay_ratio": 0.354, "d22": 6.659, "d64": 7.251, "eta": 149.006, "theta": -164.773, "eta_prime": -170.040, "theta_prime": -167.695, "eta_base": -85.678, "theta_base": -168.279, "v0": 3.024, "v1": -24.134, "v2": 34.881, "v3": -34.116, "v4": 19.617, "amplitude": 35.933, "phase_angle": 13.904, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 263.415, 117.641, 123.911 ], "x_axis": [ 0.132, -0.495, 0.859 ], "y_axis": [ -0.881, -0.456, -0.128 ], "z_axis": [ 0.455, -0.740, -0.496 ], "quaternion": [ 0.212, 0.722, -0.477, 0.455 ] } }, { "index": 252, "index_chain": 252, "chain_name": "2", "nt_resnum": 323, "nt_name": "C", "nt_code": "C", "nt_id": "///2/323", "linked_nts": [ "///2/322", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -72.057, "beta": -154.705, "gamma": 52.552, "delta": 81.289, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -154.703, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.805, 0.204 ], "P_xyz": [ 1.129, 9.327, 0.988 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 1.778, "v1": -23.666, "v2": 35.345, "v3": -35.301, "v4": 21.146, "amplitude": 36.753, "phase_angle": 15.908, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.533, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 267.757, 117.908, 119.272 ], "x_axis": [ -0.050, -0.500, 0.865 ], "y_axis": [ -0.912, -0.329, -0.243 ], "z_axis": [ 0.406, -0.801, -0.440 ], "quaternion": [ 0.213, 0.655, -0.539, 0.485 ] } }, { "index": 253, "index_chain": 253, "chain_name": "2", "nt_resnum": 329, "nt_name": "G", "nt_code": "G", "nt_id": "///2/329", "linked_nts": [ null, "///2/330" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": null, "beta": 111.046, "gamma": 60.676, "delta": 81.794, "epsilon": 177.824, "zeta": -88.000, "epsilon_zeta": -94.176, "bb_type": "BI", "chi": -143.409, "glyco_bond": "anti", "C5prime_xyz": [ -1.283, 8.735, -0.478 ], "P_xyz": [ 0.817, 7.864, -1.787 ], "form": ".", "ssZp": 3.955, "Dp": 4.368, "splay_angle": 26.108, "splay_distance": 4.374, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": null, "theta": -131.402, "eta_prime": null, "theta_prime": -161.419, "eta_base": null, "theta_base": -174.090, "v0": 3.807, "v1": -25.317, "v2": 36.021, "v3": -34.801, "v4": 19.578, "amplitude": 36.944, "phase_angle": 12.834, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 261.991, 118.387, 120.570 ], "x_axis": [ 0.658, -0.070, 0.750 ], "y_axis": [ 0.631, 0.594, -0.498 ], "z_axis": [ -0.411, 0.801, 0.435 ], "quaternion": [ 0.820, -0.396, -0.354, -0.214 ] } }, { "index": 254, "index_chain": 254, "chain_name": "2", "nt_resnum": 330, "nt_name": "G", "nt_code": "G", "nt_id": "///2/330", "linked_nts": [ "///2/329", "///2/331" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": 156.245, "beta": -148.106, "gamma": 171.064, "delta": 81.112, "epsilon": -142.878, "zeta": -63.307, "epsilon_zeta": -79.571, "bb_type": "BI", "chi": -175.938, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.482, 1.443 ], "P_xyz": [ 0.368, 9.922, 0.086 ], "form": ".", "ssZp": 4.713, "Dp": 4.717, "splay_angle": 29.023, "splay_distance": 4.507, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 166.267, "theta": -149.083, "eta_prime": 175.362, "theta_prime": -148.717, "eta_base": -169.977, "theta_base": -110.100, "v0": 5.076, "v1": -26.927, "v2": 37.370, "v3": -35.442, "v4": 19.152, "amplitude": 38.084, "phase_angle": 11.112, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.550, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 258.217, 120.079, 121.992 ], "x_axis": [ 0.744, 0.021, 0.668 ], "y_axis": [ 0.512, 0.625, -0.589 ], "z_axis": [ -0.430, 0.780, 0.454 ], "quaternion": [ 0.840, -0.407, -0.327, -0.146 ] } }, { "index": 255, "index_chain": 255, "chain_name": "2", "nt_resnum": 331, "nt_name": "C", "nt_code": "C", "nt_id": "///2/331", "linked_nts": [ "///2/330", "///2/332" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.219, "beta": 176.667, "gamma": 58.691, "delta": 80.415, "epsilon": -145.161, "zeta": -82.963, "epsilon_zeta": -62.198, "bb_type": "BI", "chi": -168.099, "glyco_bond": "anti", "C5prime_xyz": [ -1.336, 8.702, 1.002 ], "P_xyz": [ 1.235, 9.074, 1.384 ], "form": "A", "ssZp": 4.578, "Dp": 4.652, "splay_angle": 26.054, "splay_distance": 4.105, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 170.998, "theta": -152.211, "eta_prime": -169.370, "theta_prime": -150.017, "eta_base": -112.143, "theta_base": -132.011, "v0": 1.853, "v1": -24.111, "v2": 35.997, "v3": -35.935, "v4": 21.475, "amplitude": 37.419, "phase_angle": 15.846, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.915, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 258.121, 122.344, 125.887 ], "x_axis": [ 0.889, 0.458, 0.028 ], "y_axis": [ -0.175, 0.396, -0.902 ], "z_axis": [ -0.424, 0.796, 0.432 ], "quaternion": [ 0.824, -0.515, -0.137, 0.192 ] } }, { "index": 256, "index_chain": 256, "chain_name": "2", "nt_resnum": 332, "nt_name": "G", "nt_code": "G", "nt_id": "///2/332", "linked_nts": [ "///2/331", "///2/333" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.780, "beta": 160.253, "gamma": 63.984, "delta": 80.874, "epsilon": -150.479, "zeta": -96.377, "epsilon_zeta": -54.102, "bb_type": "BI", "chi": -170.660, "glyco_bond": "anti", "C5prime_xyz": [ -1.637, 8.671, 1.129 ], "P_xyz": [ 0.934, 9.175, 1.084 ], "form": ".", "ssZp": 4.572, "Dp": 4.603, "splay_angle": 39.681, "splay_distance": 6.089, "splay_ratio": 0.340, "d22": null, "d64": null, "eta": 172.014, "theta": -169.135, "eta_prime": -174.225, "theta_prime": -164.722, "eta_base": -142.984, "theta_base": -154.790, "v0": 0.947, "v1": -23.246, "v2": 35.428, "v3": -35.876, "v4": 22.025, "amplitude": 37.082, "phase_angle": 17.179, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 256.859, 124.509, 129.139 ], "x_axis": [ 0.737, 0.574, -0.357 ], "y_axis": [ -0.525, 0.153, -0.838 ], "z_axis": [ -0.426, 0.804, 0.414 ], "quaternion": [ 0.759, -0.541, -0.023, 0.362 ] } }, { "index": 257, "index_chain": 257, "chain_name": "2", "nt_resnum": 333, "nt_name": "G", "nt_code": "G", "nt_id": "///2/333", "linked_nts": [ "///2/332", "///2/334" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -65.119, "beta": -176.657, "gamma": 61.488, "delta": 82.927, "epsilon": -149.556, "zeta": -74.074, "epsilon_zeta": -75.482, "bb_type": "BI", "chi": -157.426, "glyco_bond": "anti", "C5prime_xyz": [ -1.266, 8.745, 0.382 ], "P_xyz": [ 1.333, 9.083, 0.508 ], "form": "A", "ssZp": 4.353, "Dp": 4.618, "splay_angle": 26.046, "splay_distance": 4.118, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": -172.576, "theta": -144.822, "eta_prime": -174.265, "theta_prime": -143.035, "eta_base": -167.056, "theta_base": -115.228, "v0": 3.375, "v1": -24.499, "v2": 35.104, "v3": -34.133, "v4": 19.410, "amplitude": 36.081, "phase_angle": 13.365, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.531, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 254.375, 126.836, 134.188 ], "x_axis": [ 0.598, 0.541, -0.592 ], "y_axis": [ -0.661, -0.085, -0.746 ], "z_axis": [ -0.453, 0.837, 0.306 ], "quaternion": [ 0.674, -0.587, 0.051, 0.445 ] } }, { "index": 258, "index_chain": 258, "chain_name": "2", "nt_resnum": 334, "nt_name": "C", "nt_code": "C", "nt_id": "///2/334", "linked_nts": [ "///2/333", "///2/335" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -62.526, "beta": 166.521, "gamma": 61.378, "delta": 80.828, "epsilon": -146.639, "zeta": -23.066, "epsilon_zeta": -123.574, "bb_type": "--", "chi": -157.094, "glyco_bond": "anti", "C5prime_xyz": [ -1.309, 8.788, 0.346 ], "P_xyz": [ 1.273, 9.124, 0.029 ], "form": ".", "ssZp": 4.348, "Dp": 4.651, "splay_angle": 32.523, "splay_distance": 5.919, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 172.543, "theta": -98.289, "eta_prime": -171.566, "theta_prime": -117.447, "eta_base": -129.708, "theta_base": -108.057, "v0": 2.462, "v1": -24.600, "v2": 36.167, "v3": -35.732, "v4": 21.000, "amplitude": 37.430, "phase_angle": 14.925, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.871, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 253.944, 130.795, 135.237 ], "x_axis": [ 0.130, 0.402, -0.906 ], "y_axis": [ -0.905, -0.326, -0.274 ], "z_axis": [ -0.405, 0.856, 0.322 ], "quaternion": [ 0.531, -0.532, 0.236, 0.616 ] } }, { "index": 259, "index_chain": 259, "chain_name": "2", "nt_resnum": 335, "nt_name": "G", "nt_code": "G", "nt_id": "///2/335", "linked_nts": [ "///2/334", "///2/336" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor", "alpha": -170.039, "beta": 125.267, "gamma": 170.067, "delta": 80.640, "epsilon": -143.861, "zeta": -70.082, "epsilon_zeta": -73.779, "bb_type": "BI", "chi": -175.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.515, 1.401 ], "P_xyz": [ -1.277, 10.920, 0.365 ], "form": "A", "ssZp": 4.703, "Dp": 4.705, "splay_angle": 27.614, "splay_distance": 4.310, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 164.061, "theta": 169.701, "eta_prime": 178.739, "theta_prime": -175.424, "eta_base": -148.483, "theta_base": -137.760, "v0": 4.270, "v1": -26.375, "v2": 37.237, "v3": -35.790, "v4": 19.890, "amplitude": 38.115, "phase_angle": 12.323, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 254.157, 136.621, 134.214 ], "x_axis": [ -0.118, -0.055, -0.991 ], "y_axis": [ -0.829, -0.545, 0.129 ], "z_axis": [ -0.547, 0.837, 0.019 ], "quaternion": [ 0.298, -0.593, 0.372, 0.649 ] } }, { "index": 260, "index_chain": 260, "chain_name": "2", "nt_resnum": 336, "nt_name": "A", "nt_code": "A", "nt_id": "///2/336", "linked_nts": [ "///2/335", "///2/337" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -63.869, "beta": 172.151, "gamma": 56.871, "delta": 78.519, "epsilon": -143.575, "zeta": -61.920, "epsilon_zeta": -81.655, "bb_type": "BI", "chi": 179.220, "glyco_bond": "anti", "C5prime_xyz": [ -1.763, 8.441, 1.673 ], "P_xyz": [ 0.708, 8.947, 2.378 ], "form": ".", "ssZp": 4.670, "Dp": 4.676, "splay_angle": 27.302, "splay_distance": 4.438, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": 168.981, "theta": -133.289, "eta_prime": -175.550, "theta_prime": -131.298, "eta_base": -128.594, "theta_base": -95.682, "v0": 1.048, "v1": -24.324, "v2": 37.059, "v3": -37.463, "v4": 22.938, "amplitude": 38.768, "phase_angle": 17.072, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 253.364, 140.543, 132.611 ], "x_axis": [ -0.494, -0.477, -0.727 ], "y_axis": [ -0.514, -0.514, 0.687 ], "z_axis": [ -0.701, 0.713, 0.009 ], "quaternion": [ 0.013, -0.503, 0.493, 0.710 ] } }, { "index": 261, "index_chain": 261, "chain_name": "2", "nt_resnum": 337, "nt_name": "C", "nt_code": "C", "nt_id": "///2/337", "linked_nts": [ "///2/336", "///2/338" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop", "alpha": -67.728, "beta": -177.350, "gamma": 53.683, "delta": 78.387, "epsilon": -153.749, "zeta": -72.666, "epsilon_zeta": -81.083, "bb_type": "BI", "chi": -166.867, "glyco_bond": "anti", "C5prime_xyz": [ -1.622, 8.808, 0.895 ], "P_xyz": [ 0.816, 9.501, 1.558 ], "form": "A", "ssZp": 4.520, "Dp": 4.569, "splay_angle": 22.770, "splay_distance": 3.596, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 167.464, "theta": -152.120, "eta_prime": -174.741, "theta_prime": -149.515, "eta_base": -120.383, "theta_base": -116.848, "v0": -1.144, "v1": -22.288, "v2": 35.898, "v3": -37.546, "v4": 24.372, "amplitude": 38.265, "phase_angle": 20.257, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.896, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 250.606, 142.633, 129.832 ], "x_axis": [ -0.686, -0.726, -0.047 ], "y_axis": [ -0.007, -0.058, 0.998 ], "z_axis": [ -0.728, 0.685, 0.034 ], "quaternion": [ -0.269, -0.291, 0.631, 0.667 ] } }, { "index": 262, "index_chain": 262, "chain_name": "2", "nt_resnum": 338, "nt_name": "G", "nt_code": "G", "nt_id": "///2/338", "linked_nts": [ "///2/337", "///2/339" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -63.446, "beta": 167.849, "gamma": 57.440, "delta": 80.650, "epsilon": -148.398, "zeta": -74.344, "epsilon_zeta": -74.053, "bb_type": "BI", "chi": -170.323, "glyco_bond": "anti", "C5prime_xyz": [ -1.509, 8.674, 1.118 ], "P_xyz": [ 1.062, 9.101, 1.407 ], "form": "A", "ssZp": 4.586, "Dp": 4.625, "splay_angle": 25.874, "splay_distance": 4.017, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 168.962, "theta": -145.563, "eta_prime": -176.850, "theta_prime": -144.164, "eta_base": -130.250, "theta_base": -115.892, "v0": 1.553, "v1": -23.779, "v2": 35.720, "v3": -35.805, "v4": 21.608, "amplitude": 37.210, "phase_angle": 16.268, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.935, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 247.656, 144.229, 128.535 ], "x_axis": [ -0.546, -0.657, 0.520 ], "y_axis": [ 0.382, 0.356, 0.852 ], "z_axis": [ -0.745, 0.664, 0.057 ], "quaternion": [ -0.466, -0.101, 0.679, 0.558 ] } }, { "index": 263, "index_chain": 263, "chain_name": "2", "nt_resnum": 339, "nt_name": "A", "nt_code": "A", "nt_id": "///2/339", "linked_nts": [ "///2/338", "///2/340" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -62.115, "beta": 176.708, "gamma": 52.045, "delta": 81.183, "epsilon": -161.438, "zeta": -94.900, "epsilon_zeta": -66.538, "bb_type": "BI", "chi": -161.705, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.657, 0.631 ], "P_xyz": [ 1.312, 8.996, 0.911 ], "form": ".", "ssZp": 4.470, "Dp": 4.574, "splay_angle": 40.592, "splay_distance": 6.414, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 169.406, "theta": -177.939, "eta_prime": -176.486, "theta_prime": -175.637, "eta_base": -132.937, "theta_base": 174.273, "v0": 3.923, "v1": -25.728, "v2": 36.572, "v3": -35.316, "v4": 19.791, "amplitude": 37.496, "phase_angle": 12.743, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.983, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 243.877, 145.511, 128.071 ], "x_axis": [ -0.191, -0.334, 0.923 ], "y_axis": [ 0.626, 0.683, 0.376 ], "z_axis": [ -0.756, 0.650, 0.079 ], "quaternion": [ 0.627, -0.109, -0.670, -0.383 ] } }, { "index": 264, "index_chain": 264, "chain_name": "2", "nt_resnum": 340, "nt_name": "C", "nt_code": "C", "nt_id": "///2/340", "linked_nts": [ "///2/339", "///2/341" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -65.236, "beta": -169.718, "gamma": 41.056, "delta": 81.228, "epsilon": -156.580, "zeta": -66.832, "epsilon_zeta": -89.748, "bb_type": "BI", "chi": -156.698, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.818, 0.329 ], "P_xyz": [ 1.011, 9.500, 1.183 ], "form": ".", "ssZp": 4.300, "Dp": 4.531, "splay_angle": 32.217, "splay_distance": 5.459, "splay_ratio": 0.283, "d22": 4.114, "d64": 4.996, "eta": 172.077, "theta": -115.660, "eta_prime": 164.426, "theta_prime": -117.045, "eta_base": 152.212, "theta_base": -80.481, "v0": 0.702, "v1": -22.530, "v2": 34.557, "v3": -35.128, "v4": 21.720, "amplitude": 36.242, "phase_angle": 17.540, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.779, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 240.793, 147.591, 122.846 ], "x_axis": [ 0.132, -0.602, 0.788 ], "y_axis": [ 0.567, 0.698, 0.438 ], "z_axis": [ -0.813, 0.389, 0.433 ], "quaternion": [ 0.752, 0.016, -0.532, -0.389 ] } }, { "index": 265, "index_chain": 265, "chain_name": "2", "nt_resnum": 341, "nt_name": "C", "nt_code": "C", "nt_id": "///2/341", "linked_nts": [ "///2/340", "///2/342" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 149.855, "beta": -152.297, "gamma": -177.889, "delta": 81.689, "epsilon": -108.958, "zeta": -99.012, "epsilon_zeta": -9.946, "bb_type": "--", "chi": -173.326, "glyco_bond": "anti", "C5prime_xyz": [ -1.251, 8.559, 1.338 ], "P_xyz": [ 0.333, 10.201, 0.054 ], "form": "A", "ssZp": 4.568, "Dp": 4.738, "splay_angle": 24.040, "splay_distance": 3.812, "splay_ratio": 0.208, "d22": 4.502, "d64": 3.950, "eta": 173.153, "theta": -164.930, "eta_prime": -164.604, "theta_prime": -158.448, "eta_base": -108.292, "theta_base": -131.032, "v0": 3.463, "v1": -25.040, "v2": 35.967, "v3": -34.950, "v4": 19.843, "amplitude": 36.968, "phase_angle": 13.360, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.892, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 238.314, 146.598, 127.607 ], "x_axis": [ 0.496, 0.066, 0.866 ], "y_axis": [ 0.264, 0.939, -0.223 ], "z_axis": [ -0.827, 0.339, 0.448 ], "quaternion": [ 0.849, -0.165, -0.498, -0.058 ] } }, { "index": 266, "index_chain": 266, "chain_name": "2", "nt_resnum": 342, "nt_name": "C", "nt_code": "C", "nt_id": "///2/342", "linked_nts": [ "///2/341", "///2/343" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.697, "beta": 158.579, "gamma": 43.975, "delta": 80.108, "epsilon": -138.873, "zeta": -84.051, "epsilon_zeta": -54.822, "bb_type": "BI", "chi": -159.500, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.784, 0.490 ], "P_xyz": [ 1.265, 9.076, 0.594 ], "form": "A", "ssZp": 4.385, "Dp": 4.689, "splay_angle": 23.779, "splay_distance": 3.810, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 157.127, "theta": -146.791, "eta_prime": 169.297, "theta_prime": -145.500, "eta_base": -155.992, "theta_base": -126.749, "v0": 1.870, "v1": -24.291, "v2": 36.244, "v3": -36.148, "v4": 21.604, "amplitude": 37.670, "phase_angle": 15.812, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.137, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 235.565, 146.978, 130.221 ], "x_axis": [ 0.845, 0.418, 0.333 ], "y_axis": [ -0.143, 0.778, -0.612 ], "z_axis": [ -0.515, 0.470, 0.717 ], "quaternion": [ 0.914, -0.296, -0.232, 0.153 ] } }, { "index": 267, "index_chain": 267, "chain_name": "2", "nt_resnum": 343, "nt_name": "A", "nt_code": "A", "nt_id": "///2/343", "linked_nts": [ "///2/342", "///2/344" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.887, "beta": 156.710, "gamma": 61.767, "delta": 79.900, "epsilon": -148.300, "zeta": -68.088, "epsilon_zeta": -80.212, "bb_type": "BI", "chi": -165.586, "glyco_bond": "anti", "C5prime_xyz": [ -1.754, 8.721, 0.825 ], "P_xyz": [ 0.788, 9.319, 0.633 ], "form": "A", "ssZp": 4.500, "Dp": 4.594, "splay_angle": 25.322, "splay_distance": 3.983, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 167.389, "theta": -138.557, "eta_prime": -178.148, "theta_prime": -139.118, "eta_base": -144.989, "theta_base": -97.877, "v0": -0.591, "v1": -22.319, "v2": 35.393, "v3": -36.699, "v4": 23.507, "amplitude": 37.537, "phase_angle": 19.455, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.718, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 234.478, 147.935, 133.745 ], "x_axis": [ 0.785, 0.610, -0.109 ], "y_axis": [ -0.513, 0.541, -0.666 ], "z_axis": [ -0.348, 0.578, 0.738 ], "quaternion": [ 0.875, -0.355, -0.068, 0.321 ] } }, { "index": 268, "index_chain": 268, "chain_name": "2", "nt_resnum": 344, "nt_name": "U", "nt_code": "U", "nt_id": "///2/344", "linked_nts": [ "///2/343", "///2/345" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -63.777, "beta": 168.223, "gamma": 58.959, "delta": 81.444, "epsilon": -141.312, "zeta": -74.220, "epsilon_zeta": -67.092, "bb_type": "BI", "chi": -159.019, "glyco_bond": "anti", "C5prime_xyz": [ -1.448, 8.744, 0.466 ], "P_xyz": [ 1.140, 9.171, 0.377 ], "form": "A", "ssZp": 4.362, "Dp": 4.648, "splay_angle": 30.643, "splay_distance": 4.832, "splay_ratio": 0.264, "d22": 3.954, "d64": 3.808, "eta": 170.436, "theta": -139.439, "eta_prime": -171.159, "theta_prime": -138.508, "eta_base": -111.717, "theta_base": -108.386, "v0": 1.513, "v1": -23.356, "v2": 35.119, "v3": -35.220, "v4": 21.258, "amplitude": 36.590, "phase_angle": 16.302, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.933, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 235.393, 150.994, 136.127 ], "x_axis": [ 0.186, 0.834, -0.519 ], "y_axis": [ -0.946, 0.009, -0.324 ], "z_axis": [ -0.265, 0.551, 0.791 ], "quaternion": [ 0.705, -0.310, 0.090, 0.632 ] } }, { "index": 269, "index_chain": 269, "chain_name": "2", "nt_resnum": 345, "nt_name": "U", "nt_code": "U", "nt_id": "///2/345", "linked_nts": [ "///2/344", "///2/346" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,helix,internal-loop", "alpha": -62.760, "beta": -179.288, "gamma": 44.190, "delta": 82.239, "epsilon": -151.110, "zeta": -75.917, "epsilon_zeta": -75.193, "bb_type": "BI", "chi": -171.253, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.573, 1.210 ], "P_xyz": [ 0.981, 8.876, 2.245 ], "form": "A", "ssZp": 4.543, "Dp": 4.585, "splay_angle": 23.158, "splay_distance": 3.630, "splay_ratio": 0.203, "d22": 4.661, "d64": 4.651, "eta": 165.141, "theta": -150.441, "eta_prime": 177.759, "theta_prime": -146.925, "eta_base": -137.713, "theta_base": -123.671, "v0": 2.479, "v1": -23.853, "v2": 34.943, "v3": -34.508, "v4": 20.210, "amplitude": 36.139, "phase_angle": 14.786, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.821, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 234.994, 155.086, 138.666 ], "x_axis": [ -0.226, 0.246, -0.943 ], "y_axis": [ -0.759, -0.651, 0.012 ], "z_axis": [ -0.611, 0.718, 0.334 ], "quaternion": [ 0.338, -0.522, 0.246, 0.743 ] } }, { "index": 270, "index_chain": 270, "chain_name": "2", "nt_resnum": 346, "nt_name": "C", "nt_code": "C", "nt_id": "///2/346", "linked_nts": [ "///2/345", "///2/347" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -63.190, "beta": 176.810, "gamma": 50.340, "delta": 81.799, "epsilon": -119.744, "zeta": -28.434, "epsilon_zeta": -91.310, "bb_type": "--", "chi": -163.449, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.718, 0.744 ], "P_xyz": [ 1.301, 9.038, 1.232 ], "form": ".", "ssZp": 4.376, "Dp": 4.725, "splay_angle": 24.372, "splay_distance": 4.550, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 176.201, "theta": -104.414, "eta_prime": -176.241, "theta_prime": -111.226, "eta_base": -146.581, "theta_base": -99.280, "v0": 2.804, "v1": -24.490, "v2": 35.671, "v3": -35.028, "v4": 20.331, "amplitude": 36.818, "phase_angle": 14.339, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.965, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 234.462, 158.549, 139.614 ], "x_axis": [ -0.562, -0.168, -0.810 ], "y_axis": [ -0.543, -0.663, 0.515 ], "z_axis": [ -0.624, 0.729, 0.281 ], "quaternion": [ 0.118, -0.453, 0.393, 0.792 ] } }, { "index": 271, "index_chain": 271, "chain_name": "2", "nt_resnum": 347, "nt_name": "G", "nt_code": "G", "nt_id": "///2/347", "linked_nts": [ "///2/346", "///2/348" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -111.878, "beta": 96.485, "gamma": 168.497, "delta": 81.907, "epsilon": -127.254, "zeta": -82.414, "epsilon_zeta": -44.840, "bb_type": "--", "chi": 174.924, "glyco_bond": "anti", "C5prime_xyz": [ -1.678, 8.373, 1.916 ], "P_xyz": [ -1.786, 10.721, 0.754 ], "form": "A", "ssZp": 4.620, "Dp": 4.655, "splay_angle": 22.663, "splay_distance": 3.537, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": -168.684, "theta": 163.853, "eta_prime": -158.412, "theta_prime": -176.340, "eta_base": -125.628, "theta_base": -126.962, "v0": 0.664, "v1": -22.311, "v2": 34.213, "v3": -34.794, "v4": 21.532, "amplitude": 35.888, "phase_angle": 17.575, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 231.955, 161.696, 137.490 ], "x_axis": [ -0.684, -0.409, -0.605 ], "y_axis": [ -0.344, -0.550, 0.761 ], "z_axis": [ -0.644, 0.728, 0.236 ], "quaternion": [ -0.021, -0.397, 0.474, 0.786 ] } }, { "index": 272, "index_chain": 272, "chain_name": "2", "nt_resnum": 348, "nt_name": "A", "nt_code": "A", "nt_id": "///2/348", "linked_nts": [ "///2/347", "///2/349" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -58.370, "beta": 160.468, "gamma": 54.193, "delta": 84.070, "epsilon": -146.598, "zeta": -68.887, "epsilon_zeta": -77.711, "bb_type": "BI", "chi": -166.935, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.676, 0.950 ], "P_xyz": [ 1.009, 9.002, 1.304 ], "form": ".", "ssZp": 4.399, "Dp": 4.504, "splay_angle": 24.113, "splay_distance": 3.780, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 164.057, "theta": -134.435, "eta_prime": -176.824, "theta_prime": -134.078, "eta_base": -120.389, "theta_base": -91.241, "v0": -0.404, "v1": -20.409, "v2": 32.208, "v3": -33.381, "v4": 21.347, "amplitude": 34.127, "phase_angle": 19.305, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.670, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 229.340, 163.906, 136.600 ], "x_axis": [ -0.712, -0.698, 0.074 ], "y_axis": [ 0.198, -0.099, 0.975 ], "z_axis": [ -0.673, 0.709, 0.209 ], "quaternion": [ -0.315, -0.211, 0.592, 0.711 ] } }, { "index": 273, "index_chain": 273, "chain_name": "2", "nt_resnum": 349, "nt_name": "A", "nt_code": "A", "nt_id": "///2/349", "linked_nts": [ "///2/348", "///2/350" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -63.590, "beta": 176.098, "gamma": 48.093, "delta": 83.592, "epsilon": -130.825, "zeta": -111.838, "epsilon_zeta": -18.987, "bb_type": "--", "chi": -149.374, "glyco_bond": "anti", "C5prime_xyz": [ -1.155, 8.690, -0.060 ], "P_xyz": [ 1.449, 8.961, 0.109 ], "form": ".", "ssZp": 3.944, "Dp": 4.693, "splay_angle": 24.511, "splay_distance": 3.914, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 169.901, "theta": -161.444, "eta_prime": -174.379, "theta_prime": -156.401, "eta_base": -117.255, "theta_base": -141.700, "v0": 4.057, "v1": -24.699, "v2": 34.841, "v3": -33.470, "v4": 18.593, "amplitude": 35.654, "phase_angle": 12.263, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.040, "frame": { "rmsd": 0.004, "origin": [ 225.773, 164.957, 137.278 ], "x_axis": [ -0.335, -0.552, 0.764 ], "y_axis": [ 0.577, 0.521, 0.629 ], "z_axis": [ -0.745, 0.652, 0.144 ], "quaternion": [ 0.576, -0.010, -0.654, -0.489 ] } }, { "index": 274, "index_chain": 274, "chain_name": "2", "nt_resnum": 350, "nt_name": "C", "nt_code": "C", "nt_id": "///2/350", "linked_nts": [ "///2/349", "///2/351" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -42.676, "beta": 133.481, "gamma": 56.893, "delta": 81.073, "epsilon": -156.344, "zeta": -66.806, "epsilon_zeta": -89.539, "bb_type": "BI", "chi": -151.245, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.834, -0.015 ], "P_xyz": [ 1.042, 8.701, -0.893 ], "form": ".", "ssZp": 4.168, "Dp": 4.551, "splay_angle": 30.575, "splay_distance": 5.306, "splay_ratio": 0.271, "d22": null, "d64": null, "eta": 167.063, "theta": -108.692, "eta_prime": -178.785, "theta_prime": -128.454, "eta_base": -155.551, "theta_base": -112.977, "v0": 0.528, "v1": -22.746, "v2": 35.101, "v3": -35.736, "v4": 22.218, "amplitude": 36.865, "phase_angle": 17.798, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.580, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 222.849, 167.557, 137.196 ], "x_axis": [ -0.119, -0.386, 0.915 ], "y_axis": [ 0.561, 0.734, 0.383 ], "z_axis": [ -0.819, 0.559, 0.129 ], "quaternion": [ 0.660, -0.067, -0.656, -0.358 ] } }, { "index": 275, "index_chain": 275, "chain_name": "2", "nt_resnum": 351, "nt_name": "G", "nt_code": "G", "nt_id": "///2/351", "linked_nts": [ "///2/350", "///2/352" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": 153.627, "beta": -171.492, "gamma": 178.350, "delta": 80.601, "epsilon": -142.083, "zeta": -73.166, "epsilon_zeta": -68.917, "bb_type": "BI", "chi": 172.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.528, 8.213, 2.062 ], "P_xyz": [ -0.025, 10.305, 1.584 ], "form": ".", "ssZp": 4.659, "Dp": 4.704, "splay_angle": 28.738, "splay_distance": 4.670, "splay_ratio": 0.261, "d22": null, "d64": null, "eta": 158.313, "theta": -172.131, "eta_prime": 176.130, "theta_prime": -164.781, "eta_base": -138.549, "theta_base": -147.518, "v0": 4.603, "v1": -26.617, "v2": 37.369, "v3": -35.720, "v4": 19.610, "amplitude": 38.181, "phase_angle": 11.840, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.943, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 218.337, 168.020, 139.950 ], "x_axis": [ 0.537, -0.207, 0.818 ], "y_axis": [ 0.643, 0.728, -0.237 ], "z_axis": [ -0.546, 0.653, 0.524 ], "quaternion": [ 0.835, -0.267, -0.408, -0.254 ] } }, { "index": 276, "index_chain": 276, "chain_name": "2", "nt_resnum": 352, "nt_name": "U", "nt_code": "U", "nt_id": "///2/352", "linked_nts": [ "///2/351", "///2/353" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -59.571, "beta": -165.676, "gamma": 43.494, "delta": 80.326, "epsilon": -132.344, "zeta": -83.666, "epsilon_zeta": -48.677, "bb_type": "BI", "chi": -157.874, "glyco_bond": "anti", "C5prime_xyz": [ -1.543, 8.787, 0.380 ], "P_xyz": [ 0.792, 9.576, 1.267 ], "form": "A", "ssZp": 4.260, "Dp": 4.664, "splay_angle": 26.971, "splay_distance": 4.307, "splay_ratio": 0.233, "d22": 4.086, "d64": 3.619, "eta": -179.747, "theta": -146.723, "eta_prime": -174.078, "theta_prime": -139.558, "eta_base": -157.015, "theta_base": -104.987, "v0": 0.080, "v1": -22.533, "v2": 35.138, "v3": -36.101, "v4": 22.705, "amplitude": 37.054, "phase_angle": 18.504, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.699, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 214.311, 167.779, 142.306 ], "x_axis": [ 0.784, 0.124, 0.608 ], "y_axis": [ 0.324, 0.753, -0.572 ], "z_axis": [ -0.529, 0.646, 0.550 ], "quaternion": [ 0.879, -0.347, -0.324, -0.057 ] } }, { "index": 277, "index_chain": 277, "chain_name": "2", "nt_resnum": 353, "nt_name": "C", "nt_code": "C", "nt_id": "///2/353", "linked_nts": [ "///2/352", "///2/354" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": -62.367, "beta": 172.542, "gamma": 45.838, "delta": 82.414, "epsilon": -149.690, "zeta": -75.055, "epsilon_zeta": -74.635, "bb_type": "BI", "chi": -161.834, "glyco_bond": "anti", "C5prime_xyz": [ -1.244, 8.745, 0.654 ], "P_xyz": [ 1.303, 9.060, 1.191 ], "form": "A", "ssZp": 4.415, "Dp": 4.584, "splay_angle": 22.255, "splay_distance": 3.531, "splay_ratio": 0.193, "d22": 4.372, "d64": 4.283, "eta": 161.810, "theta": -146.473, "eta_prime": 173.740, "theta_prime": -144.706, "eta_base": -144.317, "theta_base": -119.798, "v0": 2.180, "v1": -23.505, "v2": 34.702, "v3": -34.431, "v4": 20.359, "amplitude": 35.968, "phase_angle": 15.244, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.739, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 213.527, 170.279, 145.724 ], "x_axis": [ 0.967, 0.135, -0.218 ], "y_axis": [ -0.256, 0.503, -0.825 ], "z_axis": [ -0.002, 0.854, 0.521 ], "quaternion": [ 0.865, -0.485, 0.062, 0.113 ] } }, { "index": 278, "index_chain": 278, "chain_name": "2", "nt_resnum": 354, "nt_name": "U", "nt_code": "U", "nt_id": "///2/354", "linked_nts": [ "///2/353", "///2/355" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -60.358, "beta": 169.545, "gamma": 51.505, "delta": 80.222, "epsilon": -145.160, "zeta": -78.350, "epsilon_zeta": -66.811, "bb_type": "BI", "chi": -158.292, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.736, 0.420 ], "P_xyz": [ 1.218, 9.151, 0.478 ], "form": "A", "ssZp": 4.380, "Dp": 4.667, "splay_angle": 21.921, "splay_distance": 3.520, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 168.083, "theta": -146.761, "eta_prime": -178.740, "theta_prime": -145.713, "eta_base": -140.617, "theta_base": -122.476, "v0": 2.463, "v1": -24.762, "v2": 36.438, "v3": -35.998, "v4": 21.144, "amplitude": 37.712, "phase_angle": 14.938, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.965, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 214.377, 172.558, 148.284 ], "x_axis": [ 0.696, 0.339, -0.632 ], "y_axis": [ -0.713, 0.429, -0.555 ], "z_axis": [ 0.083, 0.837, 0.540 ], "quaternion": [ 0.816, -0.426, 0.219, 0.322 ] } }, { "index": 279, "index_chain": 279, "chain_name": "2", "nt_resnum": 355, "nt_name": "G", "nt_code": "G", "nt_id": "///2/355", "linked_nts": [ "///2/354", "///2/356" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -56.111, "beta": 167.116, "gamma": 50.090, "delta": 79.907, "epsilon": -124.653, "zeta": -68.306, "epsilon_zeta": -56.347, "bb_type": "--", "chi": -157.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.462, 8.823, 0.341 ], "P_xyz": [ 1.108, 9.333, 0.373 ], "form": ".", "ssZp": 4.201, "Dp": 4.718, "splay_angle": 73.909, "splay_distance": 10.816, "splay_ratio": 0.602, "d22": null, "d64": null, "eta": 172.977, "theta": -129.778, "eta_prime": -176.940, "theta_prime": -131.835, "eta_base": -143.446, "theta_base": -108.489, "v0": 0.859, "v1": -23.510, "v2": 35.958, "v3": -36.479, "v4": 22.445, "amplitude": 37.671, "phase_angle": 17.340, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 216.201, 174.994, 150.052 ], "x_axis": [ 0.215, 0.348, -0.913 ], "y_axis": [ -0.948, 0.301, -0.108 ], "z_axis": [ 0.237, 0.888, 0.394 ], "quaternion": [ 0.691, -0.360, 0.416, 0.469 ] } }, { "index": 280, "index_chain": 280, "chain_name": "2", "nt_resnum": 356, "nt_name": "C", "nt_code": "C", "nt_id": "///2/356", "linked_nts": [ "///2/355", "///2/357" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -124.821, "beta": 139.858, "gamma": 173.769, "delta": 81.214, "epsilon": -108.924, "zeta": -110.319, "epsilon_zeta": 1.395, "bb_type": "--", "chi": 47.034, "glyco_bond": "syn", "C5prime_xyz": [ -5.502, 3.997, 1.050 ], "P_xyz": [ -6.961, 3.994, 3.225 ], "form": ".", "ssZp": -2.693, "Dp": 4.551, "splay_angle": 58.568, "splay_distance": 8.580, "splay_ratio": 0.494, "d22": 6.516, "d64": 6.651, "eta": -144.077, "theta": 158.208, "eta_prime": -143.878, "theta_prime": -179.225, "eta_base": -113.653, "theta_base": 179.381, "v0": -2.277, "v1": -19.780, "v2": 32.969, "v3": -35.255, "v4": 23.645, "amplitude": 35.607, "phase_angle": 22.195, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.016, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 215.600, 185.730, 151.220 ], "x_axis": [ 0.922, 0.055, -0.384 ], "y_axis": [ 0.236, -0.866, 0.441 ], "z_axis": [ -0.308, -0.498, -0.811 ], "quaternion": [ 0.248, 0.948, 0.077, -0.182 ] } }, { "index": 281, "index_chain": 281, "chain_name": "2", "nt_resnum": 357, "nt_name": "C", "nt_code": "C", "nt_id": "///2/357", "linked_nts": [ "///2/356", "///2/358" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -72.716, "beta": -168.681, "gamma": 39.390, "delta": 80.722, "epsilon": -149.770, "zeta": -71.752, "epsilon_zeta": -78.018, "bb_type": "BI", "chi": -172.251, "glyco_bond": "anti", "C5prime_xyz": [ -1.335, 8.612, 1.252 ], "P_xyz": [ 0.900, 8.967, 2.573 ], "form": "A", "ssZp": 4.612, "Dp": 4.632, "splay_angle": 22.742, "splay_distance": 3.586, "splay_ratio": 0.200, "d22": 4.381, "d64": 4.523, "eta": 168.186, "theta": -149.782, "eta_prime": 162.949, "theta_prime": -144.284, "eta_base": 138.786, "theta_base": -114.415, "v0": 2.562, "v1": -24.682, "v2": 36.182, "v3": -35.693, "v4": 20.875, "amplitude": 37.415, "phase_angle": 14.753, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.135, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 218.508, 189.428, 158.395 ], "x_axis": [ 0.156, -0.200, -0.967 ], "y_axis": [ -0.559, -0.825, 0.081 ], "z_axis": [ -0.814, 0.528, -0.241 ], "quaternion": [ -0.150, 0.745, -0.255, -0.598 ] } }, { "index": 282, "index_chain": 282, "chain_name": "2", "nt_resnum": 358, "nt_name": "C", "nt_code": "C", "nt_id": "///2/358", "linked_nts": [ "///2/357", "///2/359" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -66.399, "beta": 173.050, "gamma": 57.048, "delta": 80.228, "epsilon": -146.811, "zeta": -66.847, "epsilon_zeta": -79.964, "bb_type": "BI", "chi": -167.698, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.709, 0.971 ], "P_xyz": [ 1.210, 9.107, 1.273 ], "form": "A", "ssZp": 4.579, "Dp": 4.652, "splay_angle": 26.695, "splay_distance": 4.170, "splay_ratio": 0.232, "d22": 4.101, "d64": 4.321, "eta": 168.831, "theta": -138.221, "eta_prime": -177.592, "theta_prime": -135.760, "eta_base": -136.715, "theta_base": -99.206, "v0": 2.003, "v1": -24.547, "v2": 36.484, "v3": -36.307, "v4": 21.637, "amplitude": 37.884, "phase_angle": 15.620, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.974, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 217.081, 192.350, 156.883 ], "x_axis": [ -0.169, -0.625, -0.762 ], "y_axis": [ -0.578, -0.564, 0.590 ], "z_axis": [ -0.798, 0.540, -0.266 ], "quaternion": [ 0.019, 0.644, -0.467, -0.605 ] } }, { "index": 283, "index_chain": 283, "chain_name": "2", "nt_resnum": 359, "nt_name": "U", "nt_code": "U", "nt_id": "///2/359", "linked_nts": [ "///2/358", "///2/360" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -65.645, "beta": 169.953, "gamma": 61.188, "delta": 80.906, "epsilon": -144.937, "zeta": -80.484, "epsilon_zeta": -64.453, "bb_type": "BI", "chi": -165.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.393, 8.681, 0.827 ], "P_xyz": [ 1.201, 9.083, 0.869 ], "form": ".", "ssZp": 4.530, "Dp": 4.655, "splay_angle": 43.585, "splay_distance": 6.720, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": 170.501, "theta": -159.298, "eta_prime": -170.403, "theta_prime": -143.143, "eta_base": -115.885, "theta_base": -143.838, "v0": 2.233, "v1": -24.352, "v2": 35.994, "v3": -35.683, "v4": 21.093, "amplitude": 37.307, "phase_angle": 15.246, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.882, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 214.338, 193.369, 153.912 ], "x_axis": [ -0.511, -0.841, -0.180 ], "y_axis": [ -0.336, 0.003, 0.942 ], "z_axis": [ -0.791, 0.542, -0.284 ], "quaternion": [ -0.228, -0.439, 0.670, 0.553 ] } }, { "index": 284, "index_chain": 284, "chain_name": "2", "nt_resnum": 360, "nt_name": "A", "nt_code": "A", "nt_id": "///2/360", "linked_nts": [ "///2/359", "///2/361" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart", "alpha": -63.381, "beta": -131.921, "gamma": 57.994, "delta": 146.242, "epsilon": -115.570, "zeta": 108.460, "epsilon_zeta": 135.970, "bb_type": "--", "chi": -77.007, "glyco_bond": "anti", "C5prime_xyz": [ -2.849, 7.203, -2.866 ], "P_xyz": [ -0.689, 8.675, -3.100 ], "form": ".", "ssZp": 0.688, "Dp": 1.301, "splay_angle": 138.484, "splay_distance": 18.837, "splay_ratio": 0.935, "d22": null, "d64": null, "eta": -135.102, "theta": 134.281, "eta_prime": -132.998, "theta_prime": 85.649, "eta_base": -149.709, "theta_base": 85.456, "v0": -20.883, "v1": 34.931, "v2": -34.871, "v3": 23.705, "v4": -1.973, "amplitude": 36.220, "phase_angle": 164.315, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.902, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 210.709, 197.912, 150.543 ], "x_axis": [ -0.454, -0.888, -0.075 ], "y_axis": [ -0.411, 0.134, 0.902 ], "z_axis": [ -0.791, 0.440, -0.425 ], "quaternion": [ -0.252, -0.458, 0.709, 0.473 ] } }, { "index": 285, "index_chain": 285, "chain_name": "2", "nt_resnum": 361, "nt_name": "U", "nt_code": "U", "nt_id": "///2/361", "linked_nts": [ "///2/360", "///2/362" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 45.883, "beta": -155.107, "gamma": 52.913, "delta": 145.296, "epsilon": -127.696, "zeta": 63.688, "epsilon_zeta": 168.616, "bb_type": "--", "chi": -124.108, "glyco_bond": "anti", "C5prime_xyz": [ -2.000, 8.596, -1.032 ], "P_xyz": [ -0.012, 9.811, 0.178 ], "form": ".", "ssZp": 1.551, "Dp": 1.546, "splay_angle": 157.473, "splay_distance": 18.849, "splay_ratio": 0.981, "d22": 10.801, "d64": 13.531, "eta": -11.134, "theta": 92.096, "eta_prime": -3.637, "theta_prime": 52.118, "eta_base": -5.152, "theta_base": -45.704, "v0": -22.301, "v1": 35.815, "v2": -34.934, "v3": 22.971, "v4": -0.622, "amplitude": 36.691, "phase_angle": 162.198, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.324, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 214.210, 209.322, 165.116 ], "x_axis": [ -0.838, 0.208, 0.505 ], "y_axis": [ -0.534, -0.509, -0.676 ], "z_axis": [ 0.116, -0.836, 0.537 ], "quaternion": [ 0.218, 0.183, -0.445, 0.849 ] } }, { "index": 286, "index_chain": 286, "chain_name": "2", "nt_resnum": 362, "nt_name": "C", "nt_code": "C", "nt_id": "///2/362", "linked_nts": [ "///2/361", "///2/363" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 58.911, "beta": 128.557, "gamma": 95.738, "delta": 80.641, "epsilon": -145.037, "zeta": -88.731, "epsilon_zeta": -56.306, "bb_type": "BI", "chi": -157.911, "glyco_bond": "anti", "C5prime_xyz": [ -1.368, 8.797, 0.382 ], "P_xyz": [ 0.406, 9.151, -1.518 ], "form": ".", "ssZp": 4.369, "Dp": 4.660, "splay_angle": 52.032, "splay_distance": 8.305, "splay_ratio": 0.440, "d22": null, "d64": null, "eta": -31.356, "theta": -169.388, "eta_prime": -5.782, "theta_prime": -165.087, "eta_base": 100.766, "theta_base": -168.496, "v0": 1.779, "v1": -24.207, "v2": 36.160, "v3": -36.137, "v4": 21.668, "amplitude": 37.608, "phase_angle": 15.956, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 213.363, 195.251, 152.603 ], "x_axis": [ -0.497, -0.357, 0.791 ], "y_axis": [ 0.077, 0.890, 0.450 ], "z_axis": [ -0.864, 0.284, -0.414 ], "quaternion": [ -0.495, -0.084, 0.837, 0.219 ] } }, { "index": 287, "index_chain": 287, "chain_name": "2", "nt_resnum": 363, "nt_name": "A", "nt_code": "A", "nt_id": "///2/363", "linked_nts": [ "///2/362", "///2/364" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -49.570, "beta": -145.733, "gamma": 55.633, "delta": 145.192, "epsilon": -85.662, "zeta": 127.016, "epsilon_zeta": 147.322, "bb_type": "BII", "chi": -99.419, "glyco_bond": "anti", "C5prime_xyz": [ -2.560, 8.017, -2.172 ], "P_xyz": [ -0.514, 9.633, -1.854 ], "form": ".", "ssZp": 0.511, "Dp": 0.574, "splay_angle": 48.178, "splay_distance": 8.784, "splay_ratio": 0.411, "d22": null, "d64": null, "eta": -121.621, "theta": 176.749, "eta_prime": -120.715, "theta_prime": 145.522, "eta_base": -142.476, "theta_base": 148.425, "v0": -23.902, "v1": 37.233, "v2": -35.573, "v3": 22.722, "v4": 0.528, "amplitude": 37.757, "phase_angle": 160.420, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.688, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 207.592, 196.757, 146.823 ], "x_axis": [ -0.316, -0.492, 0.812 ], "y_axis": [ 0.205, 0.800, 0.564 ], "z_axis": [ -0.927, 0.344, -0.152 ], "quaternion": [ 0.577, 0.095, -0.753, -0.302 ] } }, { "index": 288, "index_chain": 288, "chain_name": "2", "nt_resnum": 364, "nt_name": "A", "nt_code": "A", "nt_id": "///2/364", "linked_nts": [ "///2/363", "///2/365" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,A-minor", "alpha": 40.516, "beta": -95.548, "gamma": -93.138, "delta": 78.174, "epsilon": -148.115, "zeta": -79.368, "epsilon_zeta": -68.748, "bb_type": "BI", "chi": -172.404, "glyco_bond": "anti", "C5prime_xyz": [ -1.702, 8.569, 1.210 ], "P_xyz": [ -2.953, 10.852, 0.884 ], "form": "A", "ssZp": 4.672, "Dp": 4.679, "splay_angle": 26.394, "splay_distance": 4.132, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": -98.049, "theta": 136.626, "eta_prime": -128.573, "theta_prime": 159.539, "eta_base": -121.868, "theta_base": -166.771, "v0": 2.018, "v1": -25.347, "v2": 37.725, "v3": -37.613, "v4": 22.411, "amplitude": 39.189, "phase_angle": 15.710, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.009, "origin": [ 210.650, 198.108, 138.700 ], "x_axis": [ -0.410, 0.407, -0.816 ], "y_axis": [ -0.183, 0.840, 0.511 ], "z_axis": [ 0.894, 0.359, -0.270 ], "quaternion": [ 0.539, 0.071, 0.794, 0.274 ] } }, { "index": 289, "index_chain": 289, "chain_name": "2", "nt_resnum": 365, "nt_name": "C", "nt_code": "C", "nt_id": "///2/365", "linked_nts": [ "///2/364", "///2/366" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -68.460, "beta": 170.066, "gamma": 63.300, "delta": 78.368, "epsilon": -151.362, "zeta": -63.914, "epsilon_zeta": -87.448, "bb_type": "BI", "chi": -175.896, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.587, 1.419 ], "P_xyz": [ 1.056, 9.083, 1.657 ], "form": "A", "ssZp": 4.676, "Dp": 4.662, "splay_angle": 25.920, "splay_distance": 4.071, "splay_ratio": 0.230, "d22": 4.370, "d64": 4.403, "eta": 169.653, "theta": -140.752, "eta_prime": 179.842, "theta_prime": -140.133, "eta_base": -145.514, "theta_base": -111.179, "v0": 2.360, "v1": -25.738, "v2": 38.028, "v3": -37.668, "v4": 22.219, "amplitude": 39.406, "phase_angle": 15.196, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.789, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 213.978, 197.610, 136.302 ], "x_axis": [ -0.537, 0.731, -0.422 ], "y_axis": [ 0.017, 0.509, 0.860 ], "z_axis": [ 0.843, 0.455, -0.286 ], "quaternion": [ 0.414, 0.245, 0.764, 0.431 ] } }, { "index": 290, "index_chain": 290, "chain_name": "2", "nt_resnum": 366, "nt_name": "U", "nt_code": "U", "nt_id": "///2/366", "linked_nts": [ "///2/365", "///2/367" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,bulge", "alpha": -77.263, "beta": -167.714, "gamma": 54.039, "delta": 80.783, "epsilon": -146.196, "zeta": -73.641, "epsilon_zeta": -72.555, "bb_type": "BI", "chi": -165.958, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.667, 0.874 ], "P_xyz": [ 1.101, 9.101, 1.641 ], "form": "A", "ssZp": 4.553, "Dp": 4.656, "splay_angle": 22.614, "splay_distance": 3.626, "splay_ratio": 0.199, "d22": 4.463, "d64": 4.307, "eta": 168.969, "theta": -146.301, "eta_prime": -179.404, "theta_prime": -142.745, "eta_base": -136.102, "theta_base": -121.423, "v0": 2.683, "v1": -24.722, "v2": 36.142, "v3": -35.594, "v4": 20.758, "amplitude": 37.346, "phase_angle": 14.587, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.753, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 215.973, 199.352, 133.210 ], "x_axis": [ -0.550, 0.789, 0.276 ], "y_axis": [ 0.349, -0.083, 0.933 ], "z_axis": [ 0.759, 0.609, -0.230 ], "quaternion": [ 0.185, 0.437, 0.651, 0.592 ] } }, { "index": 291, "index_chain": 291, "chain_name": "2", "nt_resnum": 367, "nt_name": "U", "nt_code": "U", "nt_id": "///2/367", "linked_nts": [ "///2/366", "///2/368" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,bulge", "alpha": -73.656, "beta": -177.861, "gamma": 53.526, "delta": 80.763, "epsilon": -136.932, "zeta": -141.945, "epsilon_zeta": 5.012, "bb_type": "--", "chi": -157.858, "glyco_bond": "anti", "C5prime_xyz": [ -1.455, 8.762, 0.385 ], "P_xyz": [ 1.083, 9.340, 0.699 ], "form": ".", "ssZp": 4.318, "Dp": 4.679, "splay_angle": 57.124, "splay_distance": 9.761, "splay_ratio": 0.485, "d22": 9.270, "d64": 11.521, "eta": 166.875, "theta": -174.688, "eta_prime": 176.089, "theta_prime": 174.613, "eta_base": -154.069, "theta_base": 158.541, "v0": 1.452, "v1": -23.641, "v2": 35.560, "v3": -35.715, "v4": 21.605, "amplitude": 37.070, "phase_angle": 16.408, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 217.395, 201.927, 131.089 ], "x_axis": [ -0.468, 0.443, 0.765 ], "y_axis": [ 0.660, -0.401, 0.635 ], "z_axis": [ 0.588, 0.802, -0.104 ], "quaternion": [ -0.082, 0.509, 0.541, 0.664 ] } }, { "index": 292, "index_chain": 292, "chain_name": "2", "nt_resnum": 368, "nt_name": "U", "nt_code": "U", "nt_id": "///2/368", "linked_nts": [ "///2/367", "///2/369" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BII,non-stack,non-pair-contact,bulge,splayed-apart", "alpha": 77.915, "beta": -89.715, "gamma": -111.040, "delta": 81.206, "epsilon": -114.714, "zeta": 157.269, "epsilon_zeta": 88.017, "bb_type": "BII", "chi": -152.726, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.773, 0.076 ], "P_xyz": [ -2.598, 10.587, -1.428 ], "form": ".", "ssZp": 3.903, "Dp": 4.713, "splay_angle": 155.032, "splay_distance": 18.505, "splay_ratio": 0.976, "d22": 9.774, "d64": 12.198, "eta": -126.466, "theta": 57.944, "eta_prime": -148.829, "theta_prime": 38.413, "eta_base": -172.972, "theta_base": -51.840, "v0": 1.327, "v1": -23.294, "v2": 35.140, "v3": -35.382, "v4": 21.508, "amplitude": 36.670, "phase_angle": 16.614, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 222.876, 201.924, 123.012 ], "x_axis": [ 0.043, 0.981, -0.192 ], "y_axis": [ 0.443, 0.153, 0.883 ], "z_axis": [ 0.895, -0.123, -0.428 ], "quaternion": [ 0.438, 0.574, 0.620, 0.306 ] } }, { "index": 293, "index_chain": 293, "chain_name": "2", "nt_resnum": 369, "nt_name": "C", "nt_code": "C", "nt_id": "///2/369", "linked_nts": [ "///2/368", "///2/370" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,bulge,splayed-apart", "alpha": 70.075, "beta": -161.917, "gamma": 66.533, "delta": 146.420, "epsilon": -100.286, "zeta": -71.376, "epsilon_zeta": -28.910, "bb_type": "--", "chi": -125.981, "glyco_bond": "anti", "C5prime_xyz": [ -1.800, 8.662, -0.912 ], "P_xyz": [ 0.526, 9.404, 0.051 ], "form": ".", "ssZp": 0.953, "Dp": 0.972, "splay_angle": 148.102, "splay_distance": 19.903, "splay_ratio": 0.962, "d22": null, "d64": null, "eta": 25.324, "theta": -3.942, "eta_prime": 49.447, "theta_prime": -30.535, "eta_base": 132.496, "theta_base": -14.009, "v0": -21.225, "v1": 35.186, "v2": -34.964, "v3": 23.600, "v4": -1.672, "amplitude": 36.399, "phase_angle": 163.861, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 235.390, 202.563, 136.629 ], "x_axis": [ -0.057, 0.954, -0.295 ], "y_axis": [ -0.566, -0.274, -0.777 ], "z_axis": [ -0.822, 0.123, 0.556 ], "quaternion": [ 0.553, -0.407, -0.238, 0.687 ] } }, { "index": 294, "index_chain": 294, "chain_name": "2", "nt_resnum": 370, "nt_name": "G", "nt_code": "G", "nt_id": "///2/370", "linked_nts": [ "///2/369", "///2/371" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,bulge,splayed-apart", "alpha": 113.281, "beta": 121.027, "gamma": -47.007, "delta": 150.818, "epsilon": -71.366, "zeta": 121.473, "epsilon_zeta": 167.161, "bb_type": "--", "chi": -129.511, "glyco_bond": "anti", "C5prime_xyz": [ -1.766, 8.662, -0.614 ], "P_xyz": [ -1.318, 10.339, 1.353 ], "form": ".", "ssZp": 0.051, "Dp": 0.153, "splay_angle": 36.801, "splay_distance": 6.347, "splay_ratio": 0.316, "d22": null, "d64": null, "eta": -153.404, "theta": 169.031, "eta_prime": -113.632, "theta_prime": 130.761, "eta_base": -121.361, "theta_base": 102.290, "v0": -19.518, "v1": 35.479, "v2": -36.965, "v3": 26.663, "v4": -4.702, "amplitude": 37.754, "phase_angle": 168.265, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 223.122, 191.558, 125.470 ], "x_axis": [ 0.347, 0.517, -0.782 ], "y_axis": [ 0.646, 0.473, 0.599 ], "z_axis": [ 0.680, -0.713, -0.170 ], "quaternion": [ 0.642, 0.511, 0.569, -0.050 ] } }, { "index": 295, "index_chain": 295, "chain_name": "2", "nt_resnum": 371, "nt_name": "A", "nt_code": "A", "nt_id": "///2/371", "linked_nts": [ "///2/370", "///2/372" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,bulge,phosphate", "alpha": 41.482, "beta": -168.778, "gamma": 167.233, "delta": 82.315, "epsilon": -119.141, "zeta": -85.484, "epsilon_zeta": -33.657, "bb_type": "--", "chi": 163.510, "glyco_bond": "anti", "C5prime_xyz": [ -1.899, 7.976, 2.449 ], "P_xyz": [ -0.022, 9.797, 2.449 ], "form": "A", "ssZp": 4.489, "Dp": 4.651, "splay_angle": 25.298, "splay_distance": 3.982, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 107.186, "theta": -158.100, "eta_prime": 88.320, "theta_prime": -152.998, "eta_base": 80.496, "theta_base": -126.589, "v0": 1.124, "v1": -22.623, "v2": 34.276, "v3": -34.602, "v4": 21.098, "amplitude": 35.814, "phase_angle": 16.852, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.134, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 219.760, 196.144, 128.291 ], "x_axis": [ 0.764, 0.357, -0.537 ], "y_axis": [ 0.619, -0.171, 0.767 ], "z_axis": [ 0.182, -0.918, -0.352 ], "quaternion": [ 0.557, 0.756, 0.323, -0.117 ] } }, { "index": 296, "index_chain": 296, "chain_name": "2", "nt_resnum": 372, "nt_name": "U", "nt_code": "U", "nt_id": "///2/372", "linked_nts": [ "///2/371", "///2/373" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -77.692, "beta": 176.795, "gamma": 54.372, "delta": 79.296, "epsilon": -139.799, "zeta": -76.682, "epsilon_zeta": -63.117, "bb_type": "BI", "chi": -164.609, "glyco_bond": "anti", "C5prime_xyz": [ -1.462, 8.681, 0.784 ], "P_xyz": [ 1.094, 9.192, 1.039 ], "form": "A", "ssZp": 4.559, "Dp": 4.724, "splay_angle": 19.370, "splay_distance": 3.125, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": 156.020, "theta": -145.334, "eta_prime": 168.414, "theta_prime": -144.906, "eta_base": -156.197, "theta_base": -120.696, "v0": 2.900, "v1": -25.747, "v2": 37.541, "v3": -36.880, "v4": 21.406, "amplitude": 38.756, "phase_angle": 14.387, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.465, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 219.090, 193.591, 125.309 ], "x_axis": [ 0.974, 0.222, 0.056 ], "y_axis": [ 0.033, -0.376, 0.926 ], "z_axis": [ 0.226, -0.900, -0.373 ], "quaternion": [ 0.553, 0.825, 0.077, 0.085 ] } }, { "index": 297, "index_chain": 297, "chain_name": "2", "nt_resnum": 373, "nt_name": "G", "nt_code": "G", "nt_id": "///2/373", "linked_nts": [ "///2/372", "///2/374" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,phosphate", "alpha": -80.591, "beta": 165.030, "gamma": 68.855, "delta": 80.567, "epsilon": -160.737, "zeta": -72.737, "epsilon_zeta": -88.000, "bb_type": "BI", "chi": -169.472, "glyco_bond": "anti", "C5prime_xyz": [ -1.641, 8.717, 1.055 ], "P_xyz": [ 0.910, 9.319, 0.988 ], "form": ".", "ssZp": 4.486, "Dp": 4.513, "splay_angle": 28.068, "splay_distance": 4.461, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": 157.294, "theta": -153.962, "eta_prime": 173.233, "theta_prime": -156.705, "eta_base": -145.762, "theta_base": -142.103, "v0": 0.256, "v1": -22.830, "v2": 35.395, "v3": -36.200, "v4": 22.659, "amplitude": 37.254, "phase_angle": 18.180, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.511, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 220.596, 192.032, 123.058 ], "x_axis": [ 0.710, 0.272, 0.650 ], "y_axis": [ -0.431, -0.562, 0.706 ], "z_axis": [ 0.557, -0.781, -0.282 ], "quaternion": [ 0.465, 0.799, -0.050, 0.378 ] } }, { "index": 298, "index_chain": 298, "chain_name": "2", "nt_resnum": 374, "nt_name": "G", "nt_code": "G", "nt_id": "///2/374", "linked_nts": [ "///2/373", "///2/375" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,phosphate", "alpha": -66.502, "beta": -173.946, "gamma": 51.918, "delta": 81.237, "epsilon": -149.640, "zeta": -75.335, "epsilon_zeta": -74.305, "bb_type": "BI", "chi": -170.719, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.722, 1.152 ], "P_xyz": [ 0.874, 9.164, 2.183 ], "form": "A", "ssZp": 4.490, "Dp": 4.540, "splay_angle": 25.640, "splay_distance": 4.064, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 175.977, "theta": -149.631, "eta_prime": -177.801, "theta_prime": -145.836, "eta_base": -152.876, "theta_base": -121.244, "v0": -0.579, "v1": -21.311, "v2": 33.827, "v3": -35.118, "v4": 22.519, "amplitude": 35.890, "phase_angle": 19.519, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.855, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 223.348, 190.386, 119.957 ], "x_axis": [ 0.343, 0.149, 0.928 ], "y_axis": [ -0.771, -0.519, 0.368 ], "z_axis": [ 0.537, -0.841, -0.063 ], "quaternion": [ 0.436, 0.694, -0.224, 0.528 ] } }, { "index": 299, "index_chain": 299, "chain_name": "2", "nt_resnum": 375, "nt_name": "U", "nt_code": "U", "nt_id": "///2/375", "linked_nts": [ "///2/374", "///2/376" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -59.915, "beta": -179.002, "gamma": 43.403, "delta": 81.727, "epsilon": -145.715, "zeta": -75.787, "epsilon_zeta": -69.928, "bb_type": "BI", "chi": -164.834, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.682, 0.831 ], "P_xyz": [ 1.066, 9.108, 1.704 ], "form": "A", "ssZp": 4.477, "Dp": 4.614, "splay_angle": 20.309, "splay_distance": 3.184, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 170.254, "theta": -146.166, "eta_prime": 179.605, "theta_prime": -142.983, "eta_base": -146.980, "theta_base": -108.267, "v0": 1.946, "v1": -23.593, "v2": 35.087, "v3": -34.952, "v4": 20.823, "amplitude": 36.436, "phase_angle": 15.643, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.794, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 226.711, 188.224, 119.226 ], "x_axis": [ -0.200, 0.004, 0.980 ], "y_axis": [ -0.872, -0.456, -0.177 ], "z_axis": [ 0.446, -0.890, 0.094 ], "quaternion": [ 0.331, 0.539, -0.403, 0.662 ] } }, { "index": 300, "index_chain": 300, "chain_name": "2", "nt_resnum": 376, "nt_name": "A", "nt_code": "A", "nt_id": "///2/376", "linked_nts": [ "///2/375", "///2/377" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -58.081, "beta": 172.644, "gamma": 41.606, "delta": 81.375, "epsilon": -169.444, "zeta": -84.415, "epsilon_zeta": -85.029, "bb_type": "BI", "chi": -162.229, "glyco_bond": "anti", "C5prime_xyz": [ -1.134, 8.656, 0.675 ], "P_xyz": [ 1.412, 8.913, 1.234 ], "form": "A", "ssZp": 4.411, "Dp": 4.490, "splay_angle": 23.740, "splay_distance": 3.902, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 160.371, "theta": -136.274, "eta_prime": 175.369, "theta_prime": -141.610, "eta_base": -134.789, "theta_base": -123.495, "v0": 3.704, "v1": -25.188, "v2": 35.983, "v3": -34.852, "v4": 19.644, "amplitude": 36.932, "phase_angle": 13.018, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.726, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 228.591, 186.074, 120.634 ], "x_axis": [ -0.783, -0.085, 0.617 ], "y_axis": [ -0.529, -0.431, -0.731 ], "z_axis": [ 0.327, -0.899, 0.292 ], "quaternion": [ 0.140, 0.298, -0.515, 0.791 ] } }, { "index": 301, "index_chain": 301, "chain_name": "2", "nt_resnum": 377, "nt_name": "G", "nt_code": "G", "nt_id": "///2/377", "linked_nts": [ "///2/376", "///2/378" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate", "alpha": 156.499, "beta": -143.555, "gamma": 171.068, "delta": 83.570, "epsilon": -137.430, "zeta": -86.970, "epsilon_zeta": -50.460, "bb_type": "BI", "chi": 173.404, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.228, 2.040 ], "P_xyz": [ 0.623, 9.591, 1.188 ], "form": ".", "ssZp": 4.616, "Dp": 4.666, "splay_angle": 29.741, "splay_distance": 4.506, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 169.244, "theta": -163.955, "eta_prime": -173.970, "theta_prime": -162.203, "eta_base": -135.157, "theta_base": -141.233, "v0": 3.794, "v1": -24.337, "v2": 34.500, "v3": -33.286, "v4": 18.637, "amplitude": 35.356, "phase_angle": 12.630, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.642, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 230.289, 183.962, 123.441 ], "x_axis": [ -0.932, -0.279, 0.233 ], "y_axis": [ -0.130, -0.343, -0.930 ], "z_axis": [ 0.339, -0.897, 0.283 ], "quaternion": [ -0.047, 0.179, -0.571, 0.800 ] } }, { "index": 302, "index_chain": 302, "chain_name": "2", "nt_resnum": 378, "nt_name": "U", "nt_code": "U", "nt_id": "///2/378", "linked_nts": [ "///2/377", "///2/379" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -50.671, "beta": 171.274, "gamma": 46.810, "delta": 83.277, "epsilon": -136.805, "zeta": -66.992, "epsilon_zeta": -69.813, "bb_type": "BI", "chi": -174.286, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.487, 1.388 ], "P_xyz": [ 1.101, 8.611, 2.238 ], "form": "A", "ssZp": 4.599, "Dp": 4.657, "splay_angle": 25.179, "splay_distance": 3.939, "splay_ratio": 0.219, "d22": 3.742, "d64": 3.655, "eta": 177.580, "theta": -127.740, "eta_prime": -172.861, "theta_prime": -124.816, "eta_base": -143.815, "theta_base": -77.326, "v0": 3.403, "v1": -24.286, "v2": 34.777, "v3": -33.773, "v4": 19.153, "amplitude": 35.731, "phase_angle": 13.267, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.665, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 232.398, 181.463, 126.540 ], "x_axis": [ -0.882, -0.389, -0.266 ], "y_axis": [ 0.292, -0.010, -0.956 ], "z_axis": [ 0.370, -0.921, 0.123 ], "quaternion": [ -0.240, 0.037, -0.661, 0.710 ] } }, { "index": 303, "index_chain": 303, "chain_name": "2", "nt_resnum": 379, "nt_name": "C", "nt_code": "C", "nt_id": "///2/379", "linked_nts": [ "///2/378", "///2/380" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -63.251, "beta": 167.877, "gamma": 51.552, "delta": 80.896, "epsilon": -148.045, "zeta": -70.332, "epsilon_zeta": -77.713, "bb_type": "BI", "chi": -166.301, "glyco_bond": "anti", "C5prime_xyz": [ -1.335, 8.713, 0.900 ], "P_xyz": [ 1.245, 9.031, 1.231 ], "form": "A", "ssZp": 4.534, "Dp": 4.627, "splay_angle": 23.082, "splay_distance": 3.558, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 159.718, "theta": -140.654, "eta_prime": -177.913, "theta_prime": -139.324, "eta_base": -108.528, "theta_base": -96.423, "v0": 2.121, "v1": -24.317, "v2": 36.033, "v3": -35.780, "v4": 21.204, "amplitude": 37.375, "phase_angle": 15.400, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.907, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 231.249, 177.696, 126.442 ], "x_axis": [ -0.371, -0.201, -0.907 ], "y_axis": [ 0.877, 0.246, -0.414 ], "z_axis": [ 0.306, -0.948, 0.085 ], "quaternion": [ 0.490, 0.273, 0.619, -0.550 ] } }, { "index": 304, "index_chain": 304, "chain_name": "2", "nt_resnum": 380, "nt_name": "G", "nt_code": "G", "nt_id": "///2/380", "linked_nts": [ "///2/379", "///2/381" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-acceptor,phosphate", "alpha": -61.854, "beta": 168.248, "gamma": 51.582, "delta": 81.278, "epsilon": -101.775, "zeta": -112.585, "epsilon_zeta": 10.809, "bb_type": "--", "chi": -165.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.163, 8.629, 0.879 ], "P_xyz": [ 1.451, 8.771, 1.058 ], "form": ".", "ssZp": 4.338, "Dp": 4.796, "splay_angle": 79.029, "splay_distance": 11.648, "splay_ratio": 0.636, "d22": null, "d64": null, "eta": 176.423, "theta": -103.113, "eta_prime": -170.619, "theta_prime": -142.810, "eta_base": -115.194, "theta_base": 157.585, "v0": 5.317, "v1": -26.980, "v2": 37.274, "v3": -35.205, "v4": 18.864, "amplitude": 37.939, "phase_angle": 10.746, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.976, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 231.112, 174.356, 125.224 ], "x_axis": [ 0.319, 0.058, -0.946 ], "y_axis": [ 0.910, 0.261, 0.323 ], "z_axis": [ 0.266, -0.964, 0.031 ], "quaternion": [ 0.635, 0.507, 0.477, -0.336 ] } }, { "index": 305, "index_chain": 305, "chain_name": "2", "nt_resnum": 381, "nt_name": "C", "nt_code": "C", "nt_id": "///2/381", "linked_nts": [ "///2/380", "///2/382" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": 130.917, "beta": -141.284, "gamma": 64.901, "delta": 84.773, "epsilon": -173.088, "zeta": -90.703, "epsilon_zeta": -82.385, "bb_type": "BI", "chi": -140.639, "glyco_bond": "anti", "C5prime_xyz": [ -1.272, 8.724, -0.603 ], "P_xyz": [ 1.293, 8.966, -0.094 ], "form": ".", "ssZp": 3.783, "Dp": 4.343, "splay_angle": 26.092, "splay_distance": 4.243, "splay_ratio": 0.226, "d22": 4.852, "d64": 4.869, "eta": 19.607, "theta": -138.774, "eta_prime": 47.797, "theta_prime": -142.457, "eta_base": 24.053, "theta_base": -124.165, "v0": 2.395, "v1": -22.602, "v2": 33.067, "v3": -32.629, "v4": 19.112, "amplitude": 34.190, "phase_angle": 14.724, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 232.142, 169.344, 135.688 ], "x_axis": [ 0.344, 0.766, 0.542 ], "y_axis": [ 0.672, 0.203, -0.713 ], "z_axis": [ -0.656, 0.610, -0.445 ], "quaternion": [ 0.525, -0.630, -0.571, 0.045 ] } }, { "index": 306, "index_chain": 306, "chain_name": "2", "nt_resnum": 382, "nt_name": "C", "nt_code": "C", "nt_id": "///2/382", "linked_nts": [ "///2/381", "///2/383" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": 170.666, "beta": -140.750, "gamma": 155.282, "delta": 81.305, "epsilon": -108.002, "zeta": -136.809, "epsilon_zeta": 28.807, "bb_type": "--", "chi": -159.356, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.756, 0.494 ], "P_xyz": [ 0.643, 9.304, -1.219 ], "form": ".", "ssZp": 4.127, "Dp": 4.738, "splay_angle": 22.619, "splay_distance": 3.705, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 171.717, "theta": -142.923, "eta_prime": -177.405, "theta_prime": -143.098, "eta_base": -148.531, "theta_base": -152.285, "v0": 2.652, "v1": -24.408, "v2": 35.673, "v3": -35.142, "v4": 20.509, "amplitude": 36.863, "phase_angle": 14.597, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.114, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 229.195, 172.203, 134.619 ], "x_axis": [ 0.616, 0.759, 0.209 ], "y_axis": [ 0.405, -0.077, -0.911 ], "z_axis": [ -0.676, 0.646, -0.355 ], "quaternion": [ 0.544, -0.716, -0.407, 0.163 ] } }, { "index": 307, "index_chain": 307, "chain_name": "2", "nt_resnum": 383, "nt_name": "G", "nt_code": "G", "nt_id": "///2/383", "linked_nts": [ "///2/382", "///2/384" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate", "alpha": 36.645, "beta": 116.862, "gamma": -34.106, "delta": 78.538, "epsilon": 79.648, "zeta": 77.798, "epsilon_zeta": 1.850, "bb_type": "--", "chi": -128.361, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.436, -1.349 ], "P_xyz": [ 0.907, 9.389, -0.320 ], "form": "B", "ssZp": 2.344, "Dp": 3.338, "splay_angle": 21.869, "splay_distance": 3.714, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 160.614, "theta": -134.517, "eta_prime": 172.813, "theta_prime": -137.577, "eta_base": 172.945, "theta_base": -108.833, "v0": 7.734, "v1": -28.497, "v2": 37.586, "v3": -34.057, "v4": 16.693, "amplitude": 37.881, "phase_angle": 7.154, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 226.359, 174.553, 134.219 ], "x_axis": [ 0.950, -0.267, 0.164 ], "y_axis": [ 0.124, -0.162, -0.979 ], "z_axis": [ 0.288, 0.950, -0.121 ], "quaternion": [ 0.645, -0.747, 0.048, -0.151 ] } }, { "index": 308, "index_chain": 308, "chain_name": "2", "nt_resnum": 384, "nt_name": "U", "nt_code": "U", "nt_id": "///2/384", "linked_nts": [ "///2/383", "///2/385" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -164.915, "beta": 147.323, "gamma": 83.511, "delta": 80.077, "epsilon": -136.656, "zeta": -73.933, "epsilon_zeta": -62.723, "bb_type": "BI", "chi": -137.035, "glyco_bond": "anti", "C5prime_xyz": [ -1.810, 8.746, -0.881 ], "P_xyz": [ 0.110, 8.893, -2.662 ], "form": ".", "ssZp": 3.356, "Dp": 4.619, "splay_angle": 134.620, "splay_distance": 15.479, "splay_ratio": 0.925, "d22": null, "d64": null, "eta": 148.693, "theta": -137.548, "eta_prime": 170.944, "theta_prime": -160.192, "eta_base": -151.252, "theta_base": -175.014, "v0": -2.119, "v1": -20.654, "v2": 34.242, "v3": -36.402, "v4": 24.313, "amplitude": 36.883, "phase_angle": 21.814, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 227.767, 177.825, 133.167 ], "x_axis": [ 0.905, -0.320, -0.279 ], "y_axis": [ -0.256, 0.113, -0.960 ], "z_axis": [ 0.339, 0.941, 0.021 ], "quaternion": [ 0.714, -0.666, 0.216, -0.023 ] } }, { "index": 309, "index_chain": 309, "chain_name": "2", "nt_resnum": 385, "nt_name": "G", "nt_code": "G", "nt_id": "///2/385", "linked_nts": [ "///2/384", "///2/386" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart", "alpha": -52.154, "beta": 174.494, "gamma": -177.175, "delta": 148.538, "epsilon": -85.535, "zeta": 130.812, "epsilon_zeta": 143.653, "bb_type": "BII", "chi": 60.431, "glyco_bond": "syn", "C5prime_xyz": [ -5.246, 3.870, 1.237 ], "P_xyz": [ -5.831, 2.273, 3.238 ], "form": ".", "ssZp": -0.424, "Dp": 0.544, "splay_angle": 74.739, "splay_distance": 11.653, "splay_ratio": 0.608, "d22": null, "d64": null, "eta": 4.033, "theta": 113.234, "eta_prime": -2.880, "theta_prime": 92.248, "eta_base": -16.112, "theta_base": 49.696, "v0": -19.874, "v1": 34.897, "v2": -35.746, "v3": 25.257, "v4": -3.585, "amplitude": 36.725, "phase_angle": 166.738, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 224.345, 189.457, 123.545 ], "x_axis": [ 0.508, 0.814, -0.281 ], "y_axis": [ 0.588, -0.089, 0.804 ], "z_axis": [ 0.629, -0.574, -0.524 ], "quaternion": [ 0.473, 0.728, 0.481, 0.120 ] } }, { "index": 310, "index_chain": 310, "chain_name": "2", "nt_resnum": 386, "nt_name": "C", "nt_code": "C", "nt_id": "///2/386", "linked_nts": [ "///2/385", "///2/387" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": 88.592, "beta": -151.586, "gamma": 69.356, "delta": 85.256, "epsilon": -148.586, "zeta": -71.134, "epsilon_zeta": -77.452, "bb_type": "BI", "chi": -165.332, "glyco_bond": "anti", "C5prime_xyz": [ -1.380, 8.749, 0.852 ], "P_xyz": [ 1.050, 8.905, 1.833 ], "form": ".", "ssZp": 4.337, "Dp": 4.461, "splay_angle": 23.471, "splay_distance": 3.721, "splay_ratio": 0.203, "d22": 4.563, "d64": 4.154, "eta": 55.619, "theta": -137.590, "eta_prime": 46.574, "theta_prime": -134.707, "eta_base": 75.853, "theta_base": -97.619, "v0": -0.385, "v1": -19.844, "v2": 31.289, "v3": -32.410, "v4": 20.716, "amplitude": 33.146, "phase_angle": 19.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 231.662, 180.689, 125.864 ], "x_axis": [ -0.807, -0.377, -0.455 ], "y_axis": [ -0.556, 0.222, 0.801 ], "z_axis": [ -0.201, 0.899, -0.389 ], "quaternion": [ 0.082, -0.300, 0.777, 0.547 ] } }, { "index": 311, "index_chain": 311, "chain_name": "2", "nt_resnum": 387, "nt_name": "C", "nt_code": "C", "nt_id": "///2/387", "linked_nts": [ "///2/386", "///2/388" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate", "alpha": -66.032, "beta": 176.428, "gamma": 50.997, "delta": 84.146, "epsilon": -171.140, "zeta": -80.632, "epsilon_zeta": -90.508, "bb_type": "BI", "chi": -149.427, "glyco_bond": "anti", "C5prime_xyz": [ -1.151, 8.754, -0.065 ], "P_xyz": [ 1.457, 9.013, 0.087 ], "form": "A", "ssZp": 4.075, "Dp": 4.390, "splay_angle": 24.645, "splay_distance": 4.078, "splay_ratio": 0.215, "d22": 4.672, "d64": 4.940, "eta": 164.780, "theta": -134.025, "eta_prime": -176.123, "theta_prime": -141.385, "eta_base": -123.630, "theta_base": -126.294, "v0": 2.982, "v1": -23.299, "v2": 33.657, "v3": -32.896, "v4": 18.898, "amplitude": 34.663, "phase_angle": 13.837, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.937, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 230.257, 183.258, 123.568 ], "x_axis": [ -0.969, -0.149, 0.195 ], "y_axis": [ 0.098, 0.493, 0.865 ], "z_axis": [ -0.225, 0.857, -0.463 ], "quaternion": [ -0.123, -0.015, 0.855, 0.503 ] } }, { "index": 312, "index_chain": 312, "chain_name": "2", "nt_resnum": 388, "nt_name": "U", "nt_code": "U", "nt_id": "///2/388", "linked_nts": [ "///2/387", "///2/389" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 167.412, "beta": -150.990, "gamma": 161.625, "delta": 81.511, "epsilon": -103.753, "zeta": -96.975, "epsilon_zeta": -6.778, "bb_type": "--", "chi": -166.993, "glyco_bond": "anti", "C5prime_xyz": [ -1.311, 8.633, 0.961 ], "P_xyz": [ 0.579, 9.720, -0.485 ], "form": "A", "ssZp": 4.339, "Dp": 4.716, "splay_angle": 21.326, "splay_distance": 3.430, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 172.900, "theta": -149.388, "eta_prime": -175.793, "theta_prime": -149.148, "eta_base": -146.666, "theta_base": -126.784, "v0": 2.803, "v1": -24.326, "v2": 35.414, "v3": -34.802, "v4": 20.168, "amplitude": 36.551, "phase_angle": 14.329, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.412, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 228.713, 185.724, 120.711 ], "x_axis": [ -0.838, 0.061, 0.542 ], "y_axis": [ 0.473, 0.577, 0.666 ], "z_axis": [ -0.273, 0.814, -0.513 ], "quaternion": [ -0.238, 0.156, 0.856, 0.432 ] } }, { "index": 313, "index_chain": 313, "chain_name": "2", "nt_resnum": 389, "nt_name": "A", "nt_code": "A", "nt_id": "///2/389", "linked_nts": [ "///2/388", "///2/390" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -64.165, "beta": 157.952, "gamma": 42.086, "delta": 80.625, "epsilon": -150.676, "zeta": -77.996, "epsilon_zeta": -72.680, "bb_type": "BI", "chi": -159.782, "glyco_bond": "anti", "C5prime_xyz": [ -1.437, 8.746, 0.503 ], "P_xyz": [ 1.148, 9.108, 0.723 ], "form": "A", "ssZp": 4.394, "Dp": 4.601, "splay_angle": 20.354, "splay_distance": 3.260, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 144.051, "theta": -148.592, "eta_prime": 159.349, "theta_prime": -147.765, "eta_base": -164.531, "theta_base": -125.500, "v0": 1.172, "v1": -23.358, "v2": 35.432, "v3": -35.737, "v4": 21.810, "amplitude": 37.021, "phase_angle": 16.845, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.081, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 226.694, 188.099, 119.280 ], "x_axis": [ -0.081, -0.210, 0.974 ], "y_axis": [ 0.802, 0.567, 0.189 ], "z_axis": [ -0.592, 0.797, 0.123 ], "quaternion": [ 0.634, -0.240, -0.618, -0.399 ] } }, { "index": 314, "index_chain": 314, "chain_name": "2", "nt_resnum": 390, "nt_name": "C", "nt_code": "C", "nt_id": "///2/390", "linked_nts": [ "///2/389", "///2/391" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet", "alpha": -55.581, "beta": 168.839, "gamma": 51.497, "delta": 81.651, "epsilon": -162.840, "zeta": -75.853, "epsilon_zeta": -86.987, "bb_type": "BI", "chi": -149.316, "glyco_bond": "anti", "C5prime_xyz": [ -1.364, 8.847, -0.107 ], "P_xyz": [ 1.220, 9.278, -0.157 ], "form": ".", "ssZp": 4.071, "Dp": 4.450, "splay_angle": 26.556, "splay_distance": 4.592, "splay_ratio": 0.235, "d22": 4.521, "d64": 5.174, "eta": 170.815, "theta": -124.293, "eta_prime": -175.410, "theta_prime": -132.689, "eta_base": -140.379, "theta_base": -111.547, "v0": -0.086, "v1": -21.571, "v2": 33.837, "v3": -34.845, "v4": 22.053, "amplitude": 35.740, "phase_angle": 18.780, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.894, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 223.861, 189.557, 119.968 ], "x_axis": [ 0.359, 0.069, 0.931 ], "y_axis": [ 0.617, 0.730, -0.292 ], "z_axis": [ -0.700, 0.679, 0.219 ], "quaternion": [ 0.760, -0.320, -0.537, -0.180 ] } }, { "index": 315, "index_chain": 315, "chain_name": "2", "nt_resnum": 391, "nt_name": "C", "nt_code": "C", "nt_id": "///2/391", "linked_nts": [ "///2/390", "///2/392" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,multiplet", "alpha": 151.680, "beta": -153.525, "gamma": -178.811, "delta": 81.065, "epsilon": -113.554, "zeta": -92.499, "epsilon_zeta": -21.055, "bb_type": "--", "chi": -167.080, "glyco_bond": "anti", "C5prime_xyz": [ -1.285, 8.689, 0.964 ], "P_xyz": [ 0.160, 10.253, -0.559 ], "form": "A", "ssZp": 4.438, "Dp": 4.732, "splay_angle": 24.049, "splay_distance": 3.871, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 173.201, "theta": -162.945, "eta_prime": -171.889, "theta_prime": -158.251, "eta_base": -132.986, "theta_base": -132.179, "v0": 2.477, "v1": -24.437, "v2": 35.942, "v3": -35.497, "v4": 20.829, "amplitude": 37.191, "phase_angle": 14.890, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.901, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 221.130, 191.498, 123.109 ], "x_axis": [ 0.623, 0.414, 0.663 ], "y_axis": [ 0.311, 0.647, -0.696 ], "z_axis": [ -0.717, 0.640, 0.275 ], "quaternion": [ 0.798, -0.419, -0.433, 0.032 ] } }, { "index": 316, "index_chain": 316, "chain_name": "2", "nt_resnum": 392, "nt_name": "A", "nt_code": "A", "nt_id": "///2/392", "linked_nts": [ "///2/391", "///2/393" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -61.530, "beta": 161.475, "gamma": 45.750, "delta": 81.240, "epsilon": -145.017, "zeta": -78.776, "epsilon_zeta": -66.240, "bb_type": "BI", "chi": -165.844, "glyco_bond": "anti", "C5prime_xyz": [ -1.680, 8.715, 0.862 ], "P_xyz": [ 0.841, 9.213, 1.360 ], "form": ".", "ssZp": 4.450, "Dp": 4.567, "splay_angle": 24.545, "splay_distance": 3.817, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 154.028, "theta": -143.109, "eta_prime": 167.700, "theta_prime": -133.409, "eta_base": -156.690, "theta_base": -91.847, "v0": -0.779, "v1": -21.393, "v2": 34.111, "v3": -35.511, "v4": 22.898, "amplitude": 36.255, "phase_angle": 19.799, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.289, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 219.054, 193.751, 125.476 ], "x_axis": [ 0.983, 0.172, -0.058 ], "y_axis": [ -0.113, 0.326, -0.938 ], "z_axis": [ -0.143, 0.929, 0.340 ], "quaternion": [ 0.814, -0.574, -0.026, 0.088 ] } }, { "index": 317, "index_chain": 317, "chain_name": "2", "nt_resnum": 393, "nt_name": "U", "nt_code": "U", "nt_id": "///2/393", "linked_nts": [ "///2/392", "///2/394" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,bulge", "alpha": -47.896, "beta": 157.855, "gamma": 72.716, "delta": 147.831, "epsilon": -66.738, "zeta": 115.682, "epsilon_zeta": 177.580, "bb_type": "--", "chi": -129.113, "glyco_bond": "anti", "C5prime_xyz": [ -1.907, 8.647, -0.718 ], "P_xyz": [ 0.696, 8.955, -0.544 ], "form": ".", "ssZp": 0.114, "Dp": 0.133, "splay_angle": 50.699, "splay_distance": 8.285, "splay_ratio": 0.429, "d22": null, "d64": null, "eta": -136.560, "theta": 174.017, "eta_prime": -109.925, "theta_prime": 158.772, "eta_base": -71.837, "theta_base": -158.911, "v0": -21.502, "v1": 36.035, "v2": -35.992, "v3": 24.528, "v4": -2.110, "amplitude": 37.366, "phase_angle": 164.414, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.534, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 220.559, 197.085, 126.564 ], "x_axis": [ 0.656, 0.343, -0.672 ], "y_axis": [ -0.755, 0.305, -0.581 ], "z_axis": [ 0.005, 0.888, 0.459 ], "quaternion": [ 0.778, -0.472, 0.218, 0.353 ] } }, { "index": 318, "index_chain": 318, "chain_name": "2", "nt_resnum": 394, "nt_name": "G", "nt_code": "G", "nt_id": "///2/394", "linked_nts": [ "///2/393", "///2/395" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,bulge,phosphate", "alpha": 78.422, "beta": -120.519, "gamma": -176.636, "delta": 82.242, "epsilon": -107.102, "zeta": -90.570, "epsilon_zeta": -16.532, "bb_type": "--", "chi": 155.269, "glyco_bond": "anti", "C5prime_xyz": [ -1.616, 7.549, 2.835 ], "P_xyz": [ 0.380, 9.115, 2.200 ], "form": "A", "ssZp": 4.681, "Dp": 4.822, "splay_angle": 27.279, "splay_distance": 4.091, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": -165.833, "theta": -148.887, "eta_prime": -164.000, "theta_prime": -146.792, "eta_base": -110.474, "theta_base": -114.420, "v0": 7.365, "v1": -28.319, "v2": 37.469, "v3": -34.151, "v4": 16.904, "amplitude": 37.800, "phase_angle": 7.593, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.688, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 216.214, 197.232, 133.617 ], "x_axis": [ -0.214, 0.966, 0.146 ], "y_axis": [ -0.385, 0.054, -0.921 ], "z_axis": [ -0.898, -0.253, 0.360 ], "quaternion": [ 0.548, -0.305, -0.476, 0.617 ] } }, { "index": 319, "index_chain": 319, "chain_name": "2", "nt_resnum": 395, "nt_name": "G", "nt_code": "G", "nt_id": "///2/395", "linked_nts": [ "///2/394", "///2/396" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -65.042, "beta": 166.456, "gamma": 53.167, "delta": 81.650, "epsilon": -140.499, "zeta": -79.690, "epsilon_zeta": -60.809, "bb_type": "BI", "chi": -179.438, "glyco_bond": "anti", "C5prime_xyz": [ -1.464, 8.402, 1.640 ], "P_xyz": [ 1.098, 8.570, 2.169 ], "form": "A", "ssZp": 4.709, "Dp": 4.712, "splay_angle": 24.899, "splay_distance": 3.869, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 158.800, "theta": -143.525, "eta_prime": 175.123, "theta_prime": -141.845, "eta_base": -135.714, "theta_base": -120.350, "v0": 4.523, "v1": -26.124, "v2": 36.601, "v3": -34.995, "v4": 19.213, "amplitude": 37.393, "phase_angle": 11.813, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.195, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 213.564, 197.291, 136.733 ], "x_axis": [ -0.330, 0.756, -0.565 ], "y_axis": [ -0.037, -0.608, -0.793 ], "z_axis": [ -0.943, -0.241, 0.228 ], "quaternion": [ 0.269, -0.512, -0.351, 0.736 ] } }, { "index": 320, "index_chain": 320, "chain_name": "2", "nt_resnum": 396, "nt_name": "U", "nt_code": "U", "nt_id": "///2/396", "linked_nts": [ "///2/395", "///2/397" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,A-minor,phosphate", "alpha": -64.023, "beta": 171.596, "gamma": 56.548, "delta": 80.919, "epsilon": -152.060, "zeta": -69.500, "epsilon_zeta": -82.559, "bb_type": "BI", "chi": -171.242, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.584, 1.181 ], "P_xyz": [ 1.045, 8.992, 1.570 ], "form": "A", "ssZp": 4.598, "Dp": 4.620, "splay_angle": 23.497, "splay_distance": 3.692, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 168.589, "theta": -144.101, "eta_prime": -178.525, "theta_prime": -144.019, "eta_base": -141.137, "theta_base": -115.341, "v0": 2.793, "v1": -25.001, "v2": 36.440, "v3": -35.853, "v4": 20.838, "amplitude": 37.630, "phase_angle": 14.449, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 210.428, 198.173, 138.821 ], "x_axis": [ -0.241, 0.319, -0.917 ], "y_axis": [ 0.150, -0.921, -0.360 ], "z_axis": [ -0.959, -0.225, 0.174 ], "quaternion": [ 0.055, -0.613, -0.191, 0.764 ] } }, { "index": 321, "index_chain": 321, "chain_name": "2", "nt_resnum": 397, "nt_name": "G", "nt_code": "G", "nt_id": "///2/397", "linked_nts": [ "///2/396", "///2/398" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -67.949, "beta": 175.503, "gamma": 55.927, "delta": 80.262, "epsilon": -144.991, "zeta": -131.700, "epsilon_zeta": -13.292, "bb_type": "--", "chi": -168.910, "glyco_bond": "anti", "C5prime_xyz": [ -1.402, 8.670, 1.038 ], "P_xyz": [ 1.161, 9.073, 1.426 ], "form": ".", "ssZp": 4.609, "Dp": 4.675, "splay_angle": 64.359, "splay_distance": 9.617, "splay_ratio": 0.533, "d22": null, "d64": null, "eta": 168.646, "theta": 152.230, "eta_prime": -178.043, "theta_prime": 173.446, "eta_base": -133.012, "theta_base": 146.819, "v0": 2.673, "v1": -24.993, "v2": 36.598, "v3": -36.062, "v4": 21.063, "amplitude": 37.829, "phase_angle": 14.657, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.976, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 206.916, 199.296, 139.005 ], "x_axis": [ -0.071, -0.280, -0.957 ], "y_axis": [ 0.257, -0.933, 0.254 ], "z_axis": [ -0.964, -0.228, 0.138 ], "quaternion": [ -0.183, -0.656, 0.009, 0.732 ] } }, { "index": 322, "index_chain": 322, "chain_name": "2", "nt_resnum": 398, "nt_name": "A", "nt_code": "A", "nt_id": "///2/398", "linked_nts": [ "///2/397", "///2/399" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -65.529, "beta": -173.939, "gamma": 50.577, "delta": 146.764, "epsilon": -100.791, "zeta": 43.629, "epsilon_zeta": 215.580, "bb_type": "--", "chi": -95.674, "glyco_bond": "anti", "C5prime_xyz": [ -2.325, 7.874, -2.309 ], "P_xyz": [ 0.044, 8.992, -2.457 ], "form": ".", "ssZp": 0.638, "Dp": 0.974, "splay_angle": 126.504, "splay_distance": 17.276, "splay_ratio": 0.893, "d22": null, "d64": null, "eta": -153.404, "theta": 76.867, "eta_prime": -164.246, "theta_prime": 19.273, "eta_base": 150.897, "theta_base": -20.510, "v0": -20.362, "v1": 34.631, "v2": -34.861, "v3": 24.044, "v4": -2.512, "amplitude": 36.065, "phase_angle": 165.156, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 205.457, 201.089, 148.341 ], "x_axis": [ 0.306, 0.387, -0.870 ], "y_axis": [ -0.358, -0.800, -0.482 ], "z_axis": [ -0.882, 0.459, -0.106 ], "quaternion": [ -0.316, 0.744, 0.010, -0.589 ] } }, { "index": 323, "index_chain": 323, "chain_name": "2", "nt_resnum": 399, "nt_name": "C", "nt_code": "C", "nt_id": "///2/399", "linked_nts": [ "///2/398", "///2/400" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 110.198, "beta": 170.575, "gamma": 60.495, "delta": 146.352, "epsilon": -91.625, "zeta": -98.265, "epsilon_zeta": 6.640, "bb_type": "--", "chi": -133.187, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.697, -0.508 ], "P_xyz": [ 0.886, 9.028, 0.296 ], "form": ".", "ssZp": 0.813, "Dp": 0.877, "splay_angle": 113.109, "splay_distance": 16.435, "splay_ratio": 0.835, "d22": 8.378, "d64": 10.169, "eta": 25.995, "theta": -26.709, "eta_prime": 61.481, "theta_prime": -39.978, "eta_base": 82.930, "theta_base": -18.300, "v0": -19.332, "v1": 33.575, "v2": -34.226, "v3": 23.932, "v4": -3.069, "amplitude": 35.246, "phase_angle": 166.183, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 198.728, 186.278, 142.527 ], "x_axis": [ -0.833, 0.524, -0.176 ], "y_axis": [ 0.218, 0.603, 0.767 ], "z_axis": [ 0.508, 0.601, -0.617 ], "quaternion": [ 0.196, 0.212, 0.874, 0.391 ] } }, { "index": 324, "index_chain": 324, "chain_name": "2", "nt_resnum": 400, "nt_name": "C", "nt_code": "C", "nt_id": "///2/400", "linked_nts": [ "///2/399", "///2/401" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,splayed-apart", "alpha": 56.334, "beta": 121.794, "gamma": -0.492, "delta": 146.225, "epsilon": -146.797, "zeta": 137.740, "epsilon_zeta": 75.463, "bb_type": "--", "chi": -120.474, "glyco_bond": "anti", "C5prime_xyz": [ -1.919, 8.589, -1.200 ], "P_xyz": [ -0.022, 9.429, 0.424 ], "form": ".", "ssZp": 1.865, "Dp": 1.857, "splay_angle": 68.403, "splay_distance": 10.561, "splay_ratio": 0.563, "d22": null, "d64": null, "eta": 164.255, "theta": 122.966, "eta_prime": -143.572, "theta_prime": 110.584, "eta_base": -136.342, "theta_base": 129.876, "v0": -21.876, "v1": 35.764, "v2": -35.260, "v3": 23.541, "v4": -1.254, "amplitude": 36.839, "phase_angle": 163.160, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 204.769, 197.543, 152.855 ], "x_axis": [ -0.921, -0.229, 0.316 ], "y_axis": [ 0.092, -0.914, -0.395 ], "z_axis": [ 0.380, -0.334, 0.863 ], "quaternion": [ -0.083, 0.181, -0.190, 0.961 ] } }, { "index": 325, "index_chain": 325, "chain_name": "2", "nt_resnum": 401, "nt_name": "A", "nt_code": "A", "nt_id": "///2/401", "linked_nts": [ "///2/400", "///2/402" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate", "alpha": -89.072, "beta": 142.830, "gamma": 60.041, "delta": 82.819, "epsilon": -130.881, "zeta": -54.220, "epsilon_zeta": -76.661, "bb_type": "BI", "chi": -174.805, "glyco_bond": "anti", "C5prime_xyz": [ -1.684, 8.563, 1.365 ], "P_xyz": [ 0.928, 8.812, 1.321 ], "form": ".", "ssZp": 4.555, "Dp": 4.616, "splay_angle": 40.819, "splay_distance": 6.247, "splay_ratio": 0.349, "d22": null, "d64": null, "eta": 170.582, "theta": -107.644, "eta_prime": 167.792, "theta_prime": -106.545, "eta_base": 169.931, "theta_base": -53.770, "v0": -0.156, "v1": -21.396, "v2": 33.487, "v3": -34.533, "v4": 21.901, "amplitude": 35.385, "phase_angle": 18.855, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.612, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 212.246, 199.088, 145.559 ], "x_axis": [ -0.382, 0.357, 0.852 ], "y_axis": [ -0.189, -0.933, 0.306 ], "z_axis": [ 0.905, -0.044, 0.424 ], "quaternion": [ 0.165, 0.531, 0.079, 0.827 ] } }, { "index": 326, "index_chain": 326, "chain_name": "2", "nt_resnum": 402, "nt_name": "C", "nt_code": "C", "nt_id": "///2/402", "linked_nts": [ "///2/401", "///2/403" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -67.470, "beta": 164.466, "gamma": 57.434, "delta": 82.389, "epsilon": -122.792, "zeta": -77.482, "epsilon_zeta": -45.310, "bb_type": "--", "chi": -160.008, "glyco_bond": "anti", "C5prime_xyz": [ -1.190, 8.715, 0.541 ], "P_xyz": [ 1.428, 8.866, 0.397 ], "form": ".", "ssZp": 4.309, "Dp": 4.745, "splay_angle": 30.203, "splay_distance": 4.775, "splay_ratio": 0.261, "d22": null, "d64": null, "eta": 161.672, "theta": -126.363, "eta_prime": -166.462, "theta_prime": -126.244, "eta_base": -85.591, "theta_base": -89.881, "v0": 3.807, "v1": -25.172, "v2": 35.827, "v3": -34.600, "v4": 19.411, "amplitude": 36.739, "phase_angle": 12.791, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.681, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 213.052, 197.759, 151.610 ], "x_axis": [ -0.251, -0.797, 0.550 ], "y_axis": [ 0.390, -0.603, -0.696 ], "z_axis": [ 0.886, 0.040, 0.462 ], "quaternion": [ -0.390, 0.472, -0.216, 0.761 ] } }, { "index": 327, "index_chain": 327, "chain_name": "2", "nt_resnum": 403, "nt_name": "G", "nt_code": "G", "nt_id": "///2/403", "linked_nts": [ "///2/402", "///2/404" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -67.528, "beta": 168.575, "gamma": 48.953, "delta": 79.291, "epsilon": -147.100, "zeta": -73.762, "epsilon_zeta": -73.338, "bb_type": "BI", "chi": -173.890, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.546, 1.319 ], "P_xyz": [ 1.196, 8.838, 1.751 ], "form": "A", "ssZp": 4.709, "Dp": 4.709, "splay_angle": 26.261, "splay_distance": 4.142, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 151.700, "theta": -145.420, "eta_prime": 170.212, "theta_prime": -143.459, "eta_base": -132.496, "theta_base": -122.299, "v0": 4.683, "v1": -27.326, "v2": 38.393, "v3": -36.712, "v4": 20.192, "amplitude": 39.236, "phase_angle": 11.897, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.617, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 215.769, 195.229, 154.613 ], "x_axis": [ -0.414, -0.819, -0.396 ], "y_axis": [ 0.434, 0.204, -0.877 ], "z_axis": [ 0.800, -0.536, 0.271 ], "quaternion": [ 0.515, -0.166, 0.580, -0.609 ] } }, { "index": 328, "index_chain": 328, "chain_name": "2", "nt_resnum": 404, "nt_name": "G", "nt_code": "G", "nt_id": "///2/404", "linked_nts": [ "///2/403", "///2/405" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -60.349, "beta": 166.619, "gamma": 63.101, "delta": 78.903, "epsilon": -147.673, "zeta": -79.095, "epsilon_zeta": -68.578, "bb_type": "BI", "chi": -176.790, "glyco_bond": "anti", "C5prime_xyz": [ -1.697, 8.583, 1.461 ], "P_xyz": [ 0.842, 9.160, 1.740 ], "form": "A", "ssZp": 4.657, "Dp": 4.649, "splay_angle": 25.099, "splay_distance": 3.905, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 174.542, "theta": -150.776, "eta_prime": -170.571, "theta_prime": -149.857, "eta_base": -132.820, "theta_base": -124.695, "v0": 0.755, "v1": -23.886, "v2": 36.643, "v3": -37.219, "v4": 22.979, "amplitude": 38.421, "phase_angle": 17.500, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 217.202, 192.281, 157.146 ], "x_axis": [ -0.148, -0.615, -0.774 ], "y_axis": [ 0.542, 0.604, -0.584 ], "z_axis": [ 0.827, -0.506, 0.244 ], "quaternion": [ 0.652, -0.030, 0.614, -0.444 ] } }, { "index": 329, "index_chain": 329, "chain_name": "2", "nt_resnum": 405, "nt_name": "G", "nt_code": "G", "nt_id": "///2/405", "linked_nts": [ "///2/404", "///2/406" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -59.665, "beta": 167.869, "gamma": 57.957, "delta": 81.842, "epsilon": -142.271, "zeta": -66.056, "epsilon_zeta": -76.215, "bb_type": "BI", "chi": -173.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.544, 8.606, 1.324 ], "P_xyz": [ 1.013, 8.970, 1.772 ], "form": "A", "ssZp": 4.592, "Dp": 4.629, "splay_angle": 26.480, "splay_distance": 4.120, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 174.568, "theta": -131.749, "eta_prime": -173.592, "theta_prime": -129.996, "eta_base": -134.938, "theta_base": -85.838, "v0": 1.390, "v1": -23.157, "v2": 34.882, "v3": -35.042, "v4": 21.222, "amplitude": 36.373, "phase_angle": 16.460, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.907, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 218.793, 189.072, 158.701 ], "x_axis": [ 0.159, -0.184, -0.970 ], "y_axis": [ 0.497, 0.864, -0.082 ], "z_axis": [ 0.853, -0.469, 0.229 ], "quaternion": [ 0.750, 0.129, 0.608, -0.227 ] } }, { "index": 330, "index_chain": 330, "chain_name": "2", "nt_resnum": 406, "nt_name": "U", "nt_code": "U", "nt_id": "///2/406", "linked_nts": [ "///2/405", "///2/407" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -64.473, "beta": 173.929, "gamma": 51.886, "delta": 82.415, "epsilon": -107.245, "zeta": 175.411, "epsilon_zeta": 77.345, "bb_type": "BII", "chi": -161.864, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.678, 0.651 ], "P_xyz": [ 1.252, 9.017, 0.961 ], "form": ".", "ssZp": 4.218, "Dp": 4.731, "splay_angle": 153.090, "splay_distance": 15.638, "splay_ratio": 0.973, "d22": null, "d64": null, "eta": 175.366, "theta": 160.826, "eta_prime": -168.389, "theta_prime": 127.271, "eta_base": -109.730, "theta_base": 30.650, "v0": 3.034, "v1": -24.504, "v2": 35.449, "v3": -34.672, "v4": 19.977, "amplitude": 36.527, "phase_angle": 13.955, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.964, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 221.870, 186.817, 157.146 ], "x_axis": [ 0.466, 0.538, -0.703 ], "y_axis": [ 0.237, 0.689, 0.685 ], "z_axis": [ 0.853, -0.486, 0.193 ], "quaternion": [ 0.766, 0.382, 0.507, 0.098 ] } }, { "index": 331, "index_chain": 331, "chain_name": "2", "nt_resnum": 407, "nt_name": "G", "nt_code": "G", "nt_id": "///2/407", "linked_nts": [ "///2/406", "///2/408" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,junction-loop,phosphate,splayed-apart", "alpha": 81.381, "beta": -120.298, "gamma": 50.117, "delta": 142.825, "epsilon": -94.382, "zeta": -11.029, "epsilon_zeta": -83.354, "bb_type": "--", "chi": 64.314, "glyco_bond": "syn", "C5prime_xyz": [ -5.333, 4.183, 1.485 ], "P_xyz": [ -6.281, 2.273, -0.045 ], "form": ".", "ssZp": -0.790, "Dp": 0.856, "splay_angle": 105.807, "splay_distance": 16.835, "splay_ratio": 0.798, "d22": null, "d64": null, "eta": 44.137, "theta": 53.699, "eta_prime": 49.850, "theta_prime": 8.497, "eta_base": 105.734, "theta_base": -9.518, "v0": -23.441, "v1": 35.901, "v2": -33.991, "v3": 21.382, "v4": 1.100, "amplitude": 36.283, "phase_angle": 159.525, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.017, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 227.536, 192.938, 170.374 ], "x_axis": [ 0.032, 0.350, 0.936 ], "y_axis": [ -0.489, -0.811, 0.320 ], "z_axis": [ 0.872, -0.468, 0.145 ], "quaternion": [ 0.302, 0.652, -0.054, 0.694 ] } }, { "index": 332, "index_chain": 332, "chain_name": "2", "nt_resnum": 408, "nt_name": "A", "nt_code": "A", "nt_id": "///2/408", "linked_nts": [ "///2/407", "///2/409" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": 109.569, "beta": 87.588, "gamma": -176.738, "delta": 79.778, "epsilon": -141.972, "zeta": -79.466, "epsilon_zeta": -62.506, "bb_type": "BI", "chi": -160.507, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.719, 0.541 ], "P_xyz": [ -2.502, 10.720, -0.755 ], "form": ".", "ssZp": 4.436, "Dp": 4.695, "splay_angle": 84.922, "splay_distance": 13.648, "splay_ratio": 0.680, "d22": null, "d64": null, "eta": 54.720, "theta": 145.827, "eta_prime": 73.841, "theta_prime": 152.640, "eta_base": 95.809, "theta_base": 137.567, "v0": 2.349, "v1": -24.980, "v2": 36.897, "v3": -36.573, "v4": 21.577, "amplitude": 38.232, "phase_angle": 15.185, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 223.898, 185.057, 155.949 ], "x_axis": [ 0.452, 0.878, -0.159 ], "y_axis": [ 0.066, 0.145, 0.987 ], "z_axis": [ 0.890, -0.457, 0.007 ], "quaternion": [ 0.633, 0.570, 0.414, 0.320 ] } }, { "index": 333, "index_chain": 333, "chain_name": "2", "nt_resnum": 409, "nt_name": "C", "nt_code": "C", "nt_id": "///2/409", "linked_nts": [ "///2/408", "///2/410" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -51.840, "beta": 150.468, "gamma": -164.818, "delta": 81.792, "epsilon": -140.194, "zeta": -82.122, "epsilon_zeta": -58.072, "bb_type": "BI", "chi": -169.895, "glyco_bond": "anti", "C5prime_xyz": [ -1.158, 8.590, 1.129 ], "P_xyz": [ -0.670, 11.111, 0.612 ], "form": "A", "ssZp": 4.636, "Dp": 4.706, "splay_angle": 26.042, "splay_distance": 4.028, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": -44.233, "theta": 164.252, "eta_prime": -50.183, "theta_prime": -179.928, "eta_base": -65.985, "theta_base": -148.761, "v0": 4.503, "v1": -26.105, "v2": 36.609, "v3": -34.981, "v4": 19.219, "amplitude": 37.403, "phase_angle": 11.826, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 228.135, 172.242, 157.967 ], "x_axis": [ 0.476, -0.461, 0.748 ], "y_axis": [ -0.011, 0.848, 0.530 ], "z_axis": [ -0.879, -0.260, 0.399 ], "quaternion": [ 0.825, 0.239, -0.493, -0.137 ] } }, { "index": 334, "index_chain": 334, "chain_name": "2", "nt_resnum": 410, "nt_name": "G", "nt_code": "G", "nt_id": "///2/410", "linked_nts": [ "///2/409", "///2/411" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -69.745, "beta": 178.594, "gamma": 52.536, "delta": 81.973, "epsilon": -145.235, "zeta": -70.799, "epsilon_zeta": -74.436, "bb_type": "BI", "chi": -166.577, "glyco_bond": "anti", "C5prime_xyz": [ -1.222, 8.629, 0.926 ], "P_xyz": [ 1.351, 8.866, 1.382 ], "form": "A", "ssZp": 4.582, "Dp": 4.685, "splay_angle": 23.855, "splay_distance": 3.743, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 166.585, "theta": -139.940, "eta_prime": 175.100, "theta_prime": -137.615, "eta_base": -154.551, "theta_base": -105.639, "v0": 4.847, "v1": -26.321, "v2": 36.630, "v3": -34.825, "v4": 18.926, "amplitude": 37.358, "phase_angle": 11.327, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.882, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 225.055, 169.781, 158.794 ], "x_axis": [ 0.644, 0.128, 0.755 ], "y_axis": [ -0.263, 0.963, 0.061 ], "z_axis": [ -0.719, -0.237, 0.653 ], "quaternion": [ 0.903, 0.083, -0.408, 0.108 ] } }, { "index": 335, "index_chain": 335, "chain_name": "2", "nt_resnum": 411, "nt_name": "G", "nt_code": "G", "nt_id": "///2/411", "linked_nts": [ "///2/410", "///2/412" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": -65.041, "beta": 169.119, "gamma": 58.527, "delta": 80.258, "epsilon": -154.156, "zeta": -78.058, "epsilon_zeta": -76.098, "bb_type": "BI", "chi": -164.953, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.713, 0.804 ], "P_xyz": [ 1.231, 9.106, 0.815 ], "form": "A", "ssZp": 4.546, "Dp": 4.628, "splay_angle": 25.956, "splay_distance": 4.063, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 166.376, "theta": -153.404, "eta_prime": -175.699, "theta_prime": -153.699, "eta_base": -125.550, "theta_base": -137.044, "v0": 2.942, "v1": -25.245, "v2": 36.754, "v3": -36.062, "v4": 20.886, "amplitude": 37.923, "phase_angle": 14.266, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.946, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 224.045, 168.149, 162.008 ], "x_axis": [ 0.386, 0.692, 0.610 ], "y_axis": [ -0.643, 0.676, -0.360 ], "z_axis": [ -0.661, -0.253, 0.706 ], "quaternion": [ 0.832, -0.032, -0.382, 0.401 ] } }, { "index": 336, "index_chain": 336, "chain_name": "2", "nt_resnum": 412, "nt_name": "G", "nt_code": "G", "nt_id": "///2/412", "linked_nts": [ "///2/411", "///2/413" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate", "alpha": -59.559, "beta": 168.872, "gamma": 58.203, "delta": 79.778, "epsilon": -141.080, "zeta": -43.097, "epsilon_zeta": -97.982, "bb_type": "BI", "chi": -165.632, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.712, 0.842 ], "P_xyz": [ 1.210, 9.117, 0.874 ], "form": ".", "ssZp": 4.562, "Dp": 4.704, "splay_angle": 66.064, "splay_distance": 10.105, "splay_ratio": 0.547, "d22": null, "d64": null, "eta": 175.587, "theta": -77.243, "eta_prime": -174.479, "theta_prime": -75.855, "eta_base": -145.832, "theta_base": -50.473, "v0": 2.837, "v1": -25.400, "v2": 37.118, "v3": -36.464, "v4": 21.207, "amplitude": 38.330, "phase_angle": 14.448, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.909, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 222.881, 165.934, 165.209 ], "x_axis": [ 0.057, 0.913, 0.404 ], "y_axis": [ -0.752, 0.306, -0.585 ], "z_axis": [ -0.657, -0.270, 0.704 ], "quaternion": [ 0.719, -0.109, -0.369, 0.579 ] } }, { "index": 337, "index_chain": 337, "chain_name": "2", "nt_resnum": 413, "nt_name": "G", "nt_code": "G", "nt_id": "///2/413", "linked_nts": [ "///2/412", "///2/414" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": 167.132, "beta": -146.096, "gamma": 164.972, "delta": 83.368, "epsilon": -141.603, "zeta": -76.051, "epsilon_zeta": -65.552, "bb_type": "BI", "chi": 178.217, "glyco_bond": "anti", "C5prime_xyz": [ -1.459, 8.385, 1.785 ], "P_xyz": [ 0.639, 9.633, 0.826 ], "form": "A", "ssZp": 4.592, "Dp": 4.631, "splay_angle": 25.581, "splay_distance": 3.974, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 166.243, "theta": -155.448, "eta_prime": -147.726, "theta_prime": -156.401, "eta_base": -79.410, "theta_base": -132.200, "v0": 2.926, "v1": -23.749, "v2": 34.358, "v3": -33.665, "v4": 19.409, "amplitude": 35.413, "phase_angle": 14.017, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.288, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 215.967, 172.970, 167.401 ], "x_axis": [ -0.720, 0.344, -0.602 ], "y_axis": [ -0.050, -0.891, -0.451 ], "z_axis": [ -0.692, -0.295, 0.659 ], "quaternion": [ 0.109, -0.358, -0.206, 0.904 ] } }, { "index": 338, "index_chain": 338, "chain_name": "2", "nt_resnum": 414, "nt_name": "A", "nt_code": "A", "nt_id": "///2/414", "linked_nts": [ "///2/413", "///2/415" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -67.499, "beta": 179.314, "gamma": 53.151, "delta": 82.644, "epsilon": -152.982, "zeta": -74.048, "epsilon_zeta": -78.934, "bb_type": "BI", "chi": -166.710, "glyco_bond": "anti", "C5prime_xyz": [ -1.381, 8.627, 0.947 ], "P_xyz": [ 1.147, 8.967, 1.563 ], "form": "A", "ssZp": 4.500, "Dp": 4.573, "splay_angle": 23.892, "splay_distance": 3.782, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 168.080, "theta": -148.558, "eta_prime": -178.629, "theta_prime": -147.299, "eta_base": -140.441, "theta_base": -128.294, "v0": 2.644, "v1": -23.878, "v2": 34.817, "v3": -34.268, "v4": 19.963, "amplitude": 35.963, "phase_angle": 14.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.951, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 213.421, 173.790, 170.339 ], "x_axis": [ -0.584, -0.218, -0.782 ], "y_axis": [ 0.404, -0.914, -0.047 ], "z_axis": [ -0.704, -0.343, 0.622 ], "quaternion": [ -0.176, -0.421, -0.111, 0.883 ] } }, { "index": 339, "index_chain": 339, "chain_name": "2", "nt_resnum": 415, "nt_name": "A", "nt_code": "A", "nt_id": "///2/415", "linked_nts": [ "///2/414", "///2/416" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -64.839, "beta": 177.845, "gamma": 51.653, "delta": 81.277, "epsilon": -132.171, "zeta": -77.199, "epsilon_zeta": -54.972, "bb_type": "BI", "chi": -161.837, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.716, 0.633 ], "P_xyz": [ 1.157, 9.184, 1.062 ], "form": ".", "ssZp": 4.399, "Dp": 4.690, "splay_angle": 28.271, "splay_distance": 4.431, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 173.425, "theta": -135.915, "eta_prime": -177.933, "theta_prime": -130.330, "eta_base": -149.400, "theta_base": -86.721, "v0": 1.736, "v1": -23.643, "v2": 35.311, "v3": -35.287, "v4": 21.189, "amplitude": 36.728, "phase_angle": 15.969, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.972, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 210.313, 174.319, 172.428 ], "x_axis": [ -0.248, -0.606, -0.756 ], "y_axis": [ 0.620, -0.699, 0.357 ], "z_axis": [ -0.745, -0.380, 0.549 ], "quaternion": [ -0.388, -0.475, -0.007, 0.790 ] } }, { "index": 340, "index_chain": 340, "chain_name": "2", "nt_resnum": 416, "nt_name": "U", "nt_code": "U", "nt_id": "///2/416", "linked_nts": [ "///2/415", "///2/417" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate", "alpha": -58.628, "beta": 157.208, "gamma": 59.769, "delta": 81.755, "epsilon": -140.766, "zeta": -68.289, "epsilon_zeta": -72.477, "bb_type": "BI", "chi": -160.720, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.698, 0.572 ], "P_xyz": [ 1.218, 8.955, 0.210 ], "form": ".", "ssZp": 4.437, "Dp": 4.685, "splay_angle": 31.971, "splay_distance": 4.990, "splay_ratio": 0.276, "d22": 4.133, "d64": 4.486, "eta": 166.056, "theta": -131.071, "eta_prime": -172.461, "theta_prime": -129.944, "eta_base": -112.901, "theta_base": -92.908, "v0": 3.141, "v1": -24.956, "v2": 36.066, "v3": -35.233, "v4": 20.249, "amplitude": 37.147, "phase_angle": 13.859, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.737, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 207.271, 171.096, 172.388 ], "x_axis": [ 0.355, -0.876, -0.327 ], "y_axis": [ 0.537, -0.095, 0.838 ], "z_axis": [ -0.765, -0.473, 0.437 ], "quaternion": [ 0.651, 0.503, -0.168, -0.543 ] } }, { "index": 341, "index_chain": 341, "chain_name": "2", "nt_resnum": 417, "nt_name": "C", "nt_code": "C", "nt_id": "///2/417", "linked_nts": [ "///2/416", "///2/418" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -62.190, "beta": 162.231, "gamma": 66.574, "delta": 81.717, "epsilon": -147.532, "zeta": -68.376, "epsilon_zeta": -79.156, "bb_type": "BI", "chi": -162.596, "glyco_bond": "anti", "C5prime_xyz": [ -1.282, 8.745, 0.680 ], "P_xyz": [ 1.303, 9.040, 0.329 ], "form": ".", "ssZp": 4.472, "Dp": 4.628, "splay_angle": 109.732, "splay_distance": 14.563, "splay_ratio": 0.818, "d22": null, "d64": null, "eta": 171.719, "theta": -118.307, "eta_prime": -164.341, "theta_prime": -166.213, "eta_base": -105.613, "theta_base": 147.513, "v0": 2.402, "v1": -24.192, "v2": 35.550, "v3": -35.128, "v4": 20.640, "amplitude": 36.792, "phase_angle": 14.930, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.673, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 205.556, 166.502, 173.308 ], "x_axis": [ 0.647, -0.651, 0.396 ], "y_axis": [ 0.077, 0.573, 0.816 ], "z_axis": [ -0.758, -0.498, 0.421 ], "quaternion": [ 0.813, 0.404, -0.355, -0.224 ] } }, { "index": 342, "index_chain": 342, "chain_name": "2", "nt_resnum": 418, "nt_name": "A", "nt_code": "A", "nt_id": "///2/418", "linked_nts": [ "///2/417", "///2/419" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 152.518, "beta": 134.705, "gamma": 52.209, "delta": 81.145, "epsilon": -145.059, "zeta": -69.764, "epsilon_zeta": -75.295, "bb_type": "BI", "chi": -169.319, "glyco_bond": "anti", "C5prime_xyz": [ -1.619, 8.675, 1.054 ], "P_xyz": [ 0.997, 8.759, 0.931 ], "form": "A", "ssZp": 4.507, "Dp": 4.580, "splay_angle": 24.293, "splay_distance": 3.763, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -10.531, "theta": -131.476, "eta_prime": 20.883, "theta_prime": -135.930, "eta_base": 15.562, "theta_base": -93.258, "v0": -0.329, "v1": -21.788, "v2": 34.334, "v3": -35.517, "v4": 22.614, "amplitude": 36.343, "phase_angle": 19.139, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.620, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 193.538, 174.028, 176.623 ], "x_axis": [ 0.366, 0.825, 0.431 ], "y_axis": [ 0.733, -0.541, 0.413 ], "z_axis": [ 0.573, 0.165, -0.803 ], "quaternion": [ 0.075, 0.823, 0.473, 0.305 ] } }, { "index": 343, "index_chain": 343, "chain_name": "2", "nt_resnum": 419, "nt_name": "G", "nt_code": "G", "nt_id": "///2/419", "linked_nts": [ "///2/418", "///2/420" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -66.828, "beta": 169.223, "gamma": 52.554, "delta": 81.354, "epsilon": -121.762, "zeta": -72.238, "epsilon_zeta": -49.524, "bb_type": "--", "chi": -165.179, "glyco_bond": "anti", "C5prime_xyz": [ -1.193, 8.643, 0.828 ], "P_xyz": [ 1.418, 8.844, 0.970 ], "form": ".", "ssZp": 4.492, "Dp": 4.793, "splay_angle": 29.422, "splay_distance": 4.617, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": 166.547, "theta": -122.264, "eta_prime": -177.908, "theta_prime": -119.781, "eta_base": -114.616, "theta_base": -75.593, "v0": 5.114, "v1": -26.799, "v2": 37.135, "v3": -35.203, "v4": 18.982, "amplitude": 37.834, "phase_angle": 11.027, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.985, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 195.947, 176.335, 174.880 ], "x_axis": [ 0.774, 0.150, 0.615 ], "y_axis": [ 0.249, -0.965, -0.078 ], "z_axis": [ 0.582, 0.214, -0.784 ], "quaternion": [ -0.078, 0.939, 0.106, 0.319 ] } }, { "index": 344, "index_chain": 344, "chain_name": "2", "nt_resnum": 420, "nt_name": "G", "nt_code": "G", "nt_id": "///2/420", "linked_nts": [ "///2/419", "///2/421" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate", "alpha": -68.737, "beta": 165.255, "gamma": 57.224, "delta": 80.395, "epsilon": -163.014, "zeta": -74.800, "epsilon_zeta": -88.215, "bb_type": "BI", "chi": -169.063, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.659, 1.045 ], "P_xyz": [ 1.182, 9.022, 1.142 ], "form": ".", "ssZp": 4.553, "Dp": 4.561, "splay_angle": 45.280, "splay_distance": 6.948, "splay_ratio": 0.388, "d22": null, "d64": null, "eta": 152.021, "theta": -114.811, "eta_prime": 177.473, "theta_prime": -114.043, "eta_base": -114.253, "theta_base": -88.377, "v0": 2.976, "v1": -25.319, "v2": 36.776, "v3": -36.050, "v4": 20.875, "amplitude": 37.935, "phase_angle": 14.195, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.595, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 200.528, 176.894, 174.740 ], "x_axis": [ 0.357, -0.719, 0.596 ], "y_axis": [ -0.372, -0.695, -0.615 ], "z_axis": [ 0.856, -0.002, -0.516 ], "quaternion": [ -0.191, 0.801, -0.340, 0.453 ] } }, { "index": 345, "index_chain": 345, "chain_name": "2", "nt_resnum": 421, "nt_name": "G", "nt_code": "G", "nt_id": "///2/421", "linked_nts": [ "///2/420", "///2/422" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 167.501, "beta": -126.885, "gamma": 167.362, "delta": 83.294, "epsilon": -132.732, "zeta": -85.680, "epsilon_zeta": -47.052, "bb_type": "BI", "chi": 175.485, "glyco_bond": "anti", "C5prime_xyz": [ -1.588, 8.340, 1.917 ], "P_xyz": [ 0.541, 9.360, 0.776 ], "form": "A", "ssZp": 4.612, "Dp": 4.650, "splay_angle": 23.103, "splay_distance": 3.547, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": -178.670, "theta": -153.074, "eta_prime": -147.355, "theta_prime": -156.544, "eta_base": -92.165, "theta_base": -130.696, "v0": 2.054, "v1": -23.087, "v2": 34.118, "v3": -33.909, "v4": 20.112, "amplitude": 35.385, "phase_angle": 15.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.324, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 206.727, 173.898, 173.800 ], "x_axis": [ 0.107, -0.955, -0.276 ], "y_axis": [ -0.691, 0.129, -0.711 ], "z_axis": [ 0.715, 0.267, -0.647 ], "quaternion": [ 0.384, -0.637, 0.646, -0.172 ] } }, { "index": 346, "index_chain": 346, "chain_name": "2", "nt_resnum": 422, "nt_name": "U", "nt_code": "U", "nt_id": "///2/422", "linked_nts": [ "///2/421", "///2/423" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -62.319, "beta": 169.392, "gamma": 50.810, "delta": 83.203, "epsilon": -148.801, "zeta": -73.835, "epsilon_zeta": -74.966, "bb_type": "BI", "chi": -165.685, "glyco_bond": "anti", "C5prime_xyz": [ -1.237, 8.615, 0.894 ], "P_xyz": [ 1.351, 8.788, 1.303 ], "form": "A", "ssZp": 4.503, "Dp": 4.613, "splay_angle": 22.826, "splay_distance": 3.601, "splay_ratio": 0.199, "d22": 4.322, "d64": 4.400, "eta": 165.192, "theta": -142.838, "eta_prime": 178.254, "theta_prime": -142.355, "eta_base": -140.159, "theta_base": -118.671, "v0": 3.915, "v1": -24.820, "v2": 35.136, "v3": -33.845, "v4": 18.883, "amplitude": 35.991, "phase_angle": 12.510, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.756, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 210.116, 174.196, 172.798 ], "x_axis": [ -0.364, -0.679, -0.638 ], "y_axis": [ -0.593, 0.697, -0.403 ], "z_axis": [ 0.718, 0.231, -0.656 ], "quaternion": [ 0.411, -0.386, 0.824, -0.052 ] } }, { "index": 347, "index_chain": 347, "chain_name": "2", "nt_resnum": 423, "nt_name": "U", "nt_code": "U", "nt_id": "///2/423", "linked_nts": [ "///2/422", "///2/424" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -61.704, "beta": 168.434, "gamma": 55.094, "delta": 80.936, "epsilon": -150.427, "zeta": -73.995, "epsilon_zeta": -76.432, "bb_type": "BI", "chi": -163.641, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.706, 0.739 ], "P_xyz": [ 1.126, 9.135, 0.895 ], "form": "A", "ssZp": 4.490, "Dp": 4.613, "splay_angle": 25.158, "splay_distance": 3.967, "splay_ratio": 0.219, "d22": 4.409, "d64": 4.627, "eta": 168.168, "theta": -146.226, "eta_prime": -176.604, "theta_prime": -145.842, "eta_base": -136.350, "theta_base": -118.663, "v0": 1.784, "v1": -23.936, "v2": 35.749, "v3": -35.689, "v4": 21.392, "amplitude": 37.173, "phase_angle": 15.910, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.972, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 213.048, 173.516, 170.821 ], "x_axis": [ -0.639, -0.217, -0.738 ], "y_axis": [ -0.283, 0.958, -0.037 ], "z_axis": [ 0.715, 0.185, -0.674 ], "quaternion": [ 0.402, -0.138, 0.904, 0.041 ] } }, { "index": 348, "index_chain": 348, "chain_name": "2", "nt_resnum": 424, "nt_name": "C", "nt_code": "C", "nt_id": "///2/424", "linked_nts": [ "///2/423", "///2/425" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -61.442, "beta": 168.403, "gamma": 57.559, "delta": 79.618, "epsilon": -145.432, "zeta": -67.749, "epsilon_zeta": -77.684, "bb_type": "BI", "chi": -164.386, "glyco_bond": "anti", "C5prime_xyz": [ -1.359, 8.749, 0.767 ], "P_xyz": [ 1.230, 9.160, 0.803 ], "form": "A", "ssZp": 4.532, "Dp": 4.670, "splay_angle": 28.858, "splay_distance": 4.564, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 171.112, "theta": -138.084, "eta_prime": -174.963, "theta_prime": -136.901, "eta_base": -132.550, "theta_base": -105.838, "v0": 2.183, "v1": -24.900, "v2": 36.892, "v3": -36.613, "v4": 21.709, "amplitude": 38.262, "phase_angle": 15.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.952, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 215.328, 172.694, 167.680 ], "x_axis": [ -0.699, 0.351, -0.622 ], "y_axis": [ 0.130, 0.919, 0.372 ], "z_axis": [ 0.703, 0.179, -0.688 ], "quaternion": [ 0.364, 0.132, 0.909, 0.152 ] } }, { "index": 349, "index_chain": 349, "chain_name": "2", "nt_resnum": 425, "nt_name": "G", "nt_code": "G", "nt_id": "///2/425", "linked_nts": [ "///2/424", "///2/426" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": -63.520, "beta": 172.836, "gamma": 56.285, "delta": 78.363, "epsilon": -139.321, "zeta": 144.539, "epsilon_zeta": 76.140, "bb_type": "--", "chi": -169.387, "glyco_bond": "anti", "C5prime_xyz": [ -1.504, 8.690, 1.048 ], "P_xyz": [ 1.048, 9.212, 1.339 ], "form": ".", "ssZp": 4.628, "Dp": 4.714, "splay_angle": 124.380, "splay_distance": 15.244, "splay_ratio": 0.885, "d22": null, "d64": null, "eta": 169.949, "theta": 89.488, "eta_prime": -173.794, "theta_prime": 82.133, "eta_base": -125.186, "theta_base": 76.104, "v0": 2.110, "v1": -25.329, "v2": 37.715, "v3": -37.530, "v4": 22.298, "amplitude": 39.156, "phase_angle": 15.591, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 216.466, 173.331, 163.306 ], "x_axis": [ -0.563, 0.813, -0.145 ], "y_axis": [ 0.501, 0.476, 0.723 ], "z_axis": [ 0.657, 0.335, -0.675 ], "quaternion": [ 0.243, 0.399, 0.824, 0.321 ] } }, { "index": 350, "index_chain": 350, "chain_name": "2", "nt_resnum": 426, "nt_name": "A", "nt_code": "A", "nt_id": "///2/426", "linked_nts": [ "///2/425", "///2/427" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BI,non-pair-contact,internal-loop,splayed-apart", "alpha": 166.360, "beta": -145.952, "gamma": 54.539, "delta": 82.568, "epsilon": -140.067, "zeta": -50.126, "epsilon_zeta": -89.941, "bb_type": "BI", "chi": 176.157, "glyco_bond": "--", "C5prime_xyz": [ -1.369, 8.185, 1.888 ], "P_xyz": [ 0.773, 7.819, 3.355 ], "form": ".", "ssZp": 4.736, "Dp": 4.738, "splay_angle": 31.569, "splay_distance": 4.944, "splay_ratio": 0.280, "d22": null, "d64": null, "eta": 103.448, "theta": -115.206, "eta_prime": 102.273, "theta_prime": -109.648, "eta_base": 111.937, "theta_base": -65.946, "v0": 6.406, "v1": -27.808, "v2": 37.513, "v3": -34.799, "v4": 17.901, "amplitude": 37.991, "phase_angle": 9.097, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 228.522, 173.359, 172.636 ], "x_axis": [ -0.888, 0.139, 0.438 ], "y_axis": [ -0.264, 0.627, -0.733 ], "z_axis": [ -0.376, -0.767, -0.520 ], "quaternion": [ -0.234, -0.036, 0.871, -0.430 ] } }, { "index": 351, "index_chain": 351, "chain_name": "2", "nt_resnum": 427, "nt_name": "U", "nt_code": "U", "nt_id": "///2/427", "linked_nts": [ "///2/426", "///2/428" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -77.362, "beta": -168.809, "gamma": 53.617, "delta": 80.207, "epsilon": -148.358, "zeta": -136.077, "epsilon_zeta": -12.281, "bb_type": "--", "chi": -161.044, "glyco_bond": "anti", "C5prime_xyz": [ -1.454, 8.739, 0.576 ], "P_xyz": [ 1.033, 9.307, 1.186 ], "form": ".", "ssZp": 4.446, "Dp": 4.633, "splay_angle": 68.221, "splay_distance": 10.311, "splay_ratio": 0.561, "d22": 7.845, "d64": 9.116, "eta": 163.452, "theta": 145.835, "eta_prime": -172.825, "theta_prime": 165.323, "eta_base": -107.541, "theta_base": 141.894, "v0": 1.557, "v1": -24.008, "v2": 36.080, "v3": -36.172, "v4": 21.836, "amplitude": 37.589, "phase_angle": 16.287, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.586, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 224.194, 170.971, 172.748 ], "x_axis": [ -0.718, 0.606, -0.343 ], "y_axis": [ 0.571, 0.231, -0.788 ], "z_axis": [ -0.398, -0.762, -0.512 ], "quaternion": [ -0.017, 0.375, 0.784, -0.494 ] } }, { "index": 352, "index_chain": 352, "chain_name": "2", "nt_resnum": 428, "nt_name": "U", "nt_code": "U", "nt_id": "///2/428", "linked_nts": [ "///2/427", "///2/429" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -62.664, "beta": 177.438, "gamma": 48.696, "delta": 144.710, "epsilon": -88.252, "zeta": -63.674, "epsilon_zeta": -24.578, "bb_type": "--", "chi": -98.907, "glyco_bond": "anti", "C5prime_xyz": [ -2.478, 7.997, -2.203 ], "P_xyz": [ -0.135, 9.157, -2.416 ], "form": ".", "ssZp": 0.537, "Dp": 0.693, "splay_angle": 97.525, "splay_distance": 14.669, "splay_ratio": 0.753, "d22": 7.091, "d64": 7.940, "eta": -153.241, "theta": -27.504, "eta_prime": -163.296, "theta_prime": -57.011, "eta_base": 154.096, "theta_base": -24.592, "v0": -23.175, "v1": 36.254, "v2": -34.785, "v3": 22.321, "v4": 0.330, "amplitude": 36.851, "phase_angle": 160.725, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 231.160, 163.464, 173.947 ], "x_axis": [ -0.615, 0.599, 0.512 ], "y_axis": [ -0.463, 0.252, -0.850 ], "z_axis": [ -0.638, -0.760, 0.122 ], "quaternion": [ -0.435, 0.052, 0.661, -0.609 ] } }, { "index": 353, "index_chain": 353, "chain_name": "2", "nt_resnum": 429, "nt_name": "C", "nt_code": "C", "nt_id": "///2/429", "linked_nts": [ "///2/428", "///2/430" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,splayed-apart", "alpha": -109.318, "beta": -168.006, "gamma": 54.924, "delta": 80.572, "epsilon": -152.567, "zeta": -74.451, "epsilon_zeta": -78.116, "bb_type": "BI", "chi": -162.304, "glyco_bond": "anti", "C5prime_xyz": [ -1.284, 8.741, 0.660 ], "P_xyz": [ 1.231, 9.160, 1.263 ], "form": "A", "ssZp": 4.489, "Dp": 4.624, "splay_angle": 24.995, "splay_distance": 3.954, "splay_ratio": 0.218, "d22": 4.526, "d64": 4.566, "eta": 111.255, "theta": -151.941, "eta_prime": 160.221, "theta_prime": -149.087, "eta_base": -178.373, "theta_base": -129.441, "v0": 2.928, "v1": -25.061, "v2": 36.457, "v3": -35.761, "v4": 20.698, "amplitude": 37.613, "phase_angle": 14.238, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.133, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 223.834, 167.706, 161.967 ], "x_axis": [ 0.540, 0.594, 0.596 ], "y_axis": [ 0.584, -0.775, 0.244 ], "z_axis": [ 0.606, 0.216, -0.765 ], "quaternion": [ 0.008, 0.877, 0.336, 0.342 ] } }, { "index": 354, "index_chain": 354, "chain_name": "2", "nt_resnum": 430, "nt_name": "C", "nt_code": "C", "nt_id": "///2/430", "linked_nts": [ "///2/429", "///2/431" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.646, "beta": -179.497, "gamma": 52.430, "delta": 80.135, "epsilon": -148.936, "zeta": -69.986, "epsilon_zeta": -78.950, "bb_type": "BI", "chi": -163.695, "glyco_bond": "anti", "C5prime_xyz": [ -1.315, 8.733, 0.738 ], "P_xyz": [ 1.238, 9.159, 1.159 ], "form": "A", "ssZp": 4.530, "Dp": 4.655, "splay_angle": 22.227, "splay_distance": 3.595, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 168.059, "theta": -144.557, "eta_prime": 176.862, "theta_prime": -143.198, "eta_base": -153.680, "theta_base": -118.700, "v0": 2.693, "v1": -25.131, "v2": 36.771, "v3": -36.215, "v4": 21.121, "amplitude": 38.001, "phase_angle": 14.616, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 225.133, 169.935, 158.970 ], "x_axis": [ 0.591, 0.097, 0.801 ], "y_axis": [ 0.262, -0.962, -0.077 ], "z_axis": [ 0.763, 0.255, -0.594 ], "quaternion": [ -0.094, 0.887, 0.101, 0.441 ] } }, { "index": 355, "index_chain": 355, "chain_name": "2", "nt_resnum": 431, "nt_name": "G", "nt_code": "G", "nt_id": "///2/431", "linked_nts": [ "///2/430", "///2/432" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -68.225, "beta": 174.622, "gamma": 55.226, "delta": 79.082, "epsilon": -152.874, "zeta": -70.271, "epsilon_zeta": -82.603, "bb_type": "BI", "chi": -164.982, "glyco_bond": "anti", "C5prime_xyz": [ -1.562, 8.773, 0.786 ], "P_xyz": [ 0.969, 9.396, 1.051 ], "form": "A", "ssZp": 4.537, "Dp": 4.619, "splay_angle": 23.442, "splay_distance": 3.738, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 164.801, "theta": -147.984, "eta_prime": 178.652, "theta_prime": -147.020, "eta_base": -141.711, "theta_base": -118.091, "v0": 0.863, "v1": -24.014, "v2": 36.721, "v3": -37.222, "v4": 22.919, "amplitude": 38.467, "phase_angle": 17.329, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.978, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 227.672, 172.332, 158.116 ], "x_axis": [ 0.483, -0.465, 0.742 ], "y_axis": [ -0.028, -0.855, -0.517 ], "z_axis": [ 0.875, 0.229, -0.426 ], "quaternion": [ -0.224, 0.831, -0.148, 0.486 ] } }, { "index": 356, "index_chain": 356, "chain_name": "2", "nt_resnum": 432, "nt_name": "G", "nt_code": "G", "nt_id": "///2/432", "linked_nts": [ "///2/431", "///2/433" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop", "alpha": -66.918, "beta": 172.788, "gamma": 57.651, "delta": 80.331, "epsilon": -146.471, "zeta": -74.417, "epsilon_zeta": -72.053, "bb_type": "BI", "chi": -168.524, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.716, 1.005 ], "P_xyz": [ 1.001, 9.239, 1.352 ], "form": "A", "ssZp": 4.564, "Dp": 4.628, "splay_angle": 20.914, "splay_distance": 3.326, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 169.270, "theta": -145.762, "eta_prime": -177.397, "theta_prime": -143.758, "eta_base": -133.941, "theta_base": -118.801, "v0": 0.881, "v1": -23.323, "v2": 35.625, "v3": -36.105, "v4": 22.207, "amplitude": 37.308, "phase_angle": 17.280, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.950, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 231.115, 173.765, 158.369 ], "x_axis": [ 0.259, -0.888, 0.380 ], "y_axis": [ -0.284, -0.446, -0.849 ], "z_axis": [ 0.923, 0.112, -0.368 ], "quaternion": [ -0.334, 0.720, -0.407, 0.453 ] } }, { "index": 357, "index_chain": 357, "chain_name": "2", "nt_resnum": 433, "nt_name": "A", "nt_code": "A", "nt_id": "///2/433", "linked_nts": [ "///2/432", "///2/434" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate", "alpha": -71.793, "beta": -175.793, "gamma": 51.171, "delta": 84.389, "epsilon": -156.571, "zeta": -78.347, "epsilon_zeta": -78.224, "bb_type": "BI", "chi": -154.168, "glyco_bond": "anti", "C5prime_xyz": [ -1.281, 8.753, 0.233 ], "P_xyz": [ 1.248, 9.198, 0.781 ], "form": "A", "ssZp": 4.173, "Dp": 4.461, "splay_angle": 20.067, "splay_distance": 3.191, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": 166.260, "theta": -154.266, "eta_prime": 177.406, "theta_prime": -152.774, "eta_base": -146.423, "theta_base": -133.419, "v0": 1.573, "v1": -21.898, "v2": 32.725, "v3": -32.746, "v4": 19.683, "amplitude": 34.050, "phase_angle": 16.041, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 234.401, 173.977, 158.841 ], "x_axis": [ -0.234, -0.967, -0.103 ], "y_axis": [ -0.247, 0.162, -0.955 ], "z_axis": [ 0.940, -0.198, -0.277 ], "quaternion": [ 0.403, -0.469, 0.647, -0.446 ] } }, { "index": 358, "index_chain": 358, "chain_name": "2", "nt_resnum": 434, "nt_name": "G", "nt_code": "G", "nt_id": "///2/434", "linked_nts": [ "///2/433", "///2/435" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate", "alpha": -65.468, "beta": 172.883, "gamma": 50.958, "delta": 83.682, "epsilon": -153.255, "zeta": -86.105, "epsilon_zeta": -67.150, "bb_type": "BI", "chi": -147.915, "glyco_bond": "anti", "C5prime_xyz": [ -1.232, 8.723, -0.163 ], "P_xyz": [ 1.381, 8.971, -0.220 ], "form": ".", "ssZp": 4.049, "Dp": 4.585, "splay_angle": 25.716, "splay_distance": 4.031, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 166.339, "theta": -157.759, "eta_prime": 177.063, "theta_prime": -150.683, "eta_base": -153.263, "theta_base": -132.438, "v0": 4.259, "v1": -24.944, "v2": 35.043, "v3": -33.557, "v4": 18.492, "amplitude": 35.820, "phase_angle": 11.960, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 237.552, 173.484, 158.928 ], "x_axis": [ -0.361, -0.771, -0.524 ], "y_axis": [ 0.037, 0.549, -0.835 ], "z_axis": [ 0.932, -0.321, -0.170 ], "quaternion": [ 0.505, -0.254, 0.721, -0.401 ] } }, { "index": 359, "index_chain": 359, "chain_name": "2", "nt_resnum": 435, "nt_name": "A", "nt_code": "A", "nt_id": "///2/435", "linked_nts": [ "///2/434", "///2/436" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -58.947, "beta": 150.381, "gamma": 93.392, "delta": 147.221, "epsilon": -126.894, "zeta": 106.143, "epsilon_zeta": 126.962, "bb_type": "--", "chi": -128.315, "glyco_bond": "anti", "C5prime_xyz": [ -1.723, 8.613, -0.735 ], "P_xyz": [ 0.828, 8.659, -1.326 ], "form": ".", "ssZp": 1.457, "Dp": 1.485, "splay_angle": 160.318, "splay_distance": 19.216, "splay_ratio": 0.985, "d22": null, "d64": null, "eta": -154.897, "theta": 117.180, "eta_prime": -123.587, "theta_prime": 61.937, "eta_base": -110.784, "theta_base": 11.513, "v0": -19.507, "v1": 34.218, "v2": -35.083, "v3": 24.723, "v4": -3.490, "amplitude": 36.049, "phase_angle": 166.706, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 241.179, 171.770, 158.524 ], "x_axis": [ -0.316, -0.494, -0.810 ], "y_axis": [ 0.320, 0.748, -0.582 ], "z_axis": [ 0.893, -0.443, -0.078 ], "quaternion": [ 0.582, -0.059, 0.732, -0.350 ] } }, { "index": 360, "index_chain": 360, "chain_name": "2", "nt_resnum": 436, "nt_name": "G", "nt_code": "G", "nt_id": "///2/436", "linked_nts": [ "///2/435", "///2/437" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart", "alpha": 68.825, "beta": -172.210, "gamma": 43.647, "delta": 85.234, "epsilon": -146.946, "zeta": -89.749, "epsilon_zeta": -57.197, "bb_type": "BI", "chi": -152.410, "glyco_bond": "anti", "C5prime_xyz": [ -1.109, 8.841, 0.160 ], "P_xyz": [ 1.312, 9.358, 1.051 ], "form": ".", "ssZp": 4.026, "Dp": 4.437, "splay_angle": 18.752, "splay_distance": 3.060, "splay_ratio": 0.164, "d22": null, "d64": null, "eta": -16.293, "theta": -154.042, "eta_prime": -15.607, "theta_prime": -148.541, "eta_base": 33.091, "theta_base": -127.051, "v0": 0.372, "v1": -20.143, "v2": 31.110, "v3": -31.760, "v4": 19.833, "amplitude": 32.708, "phase_angle": 17.983, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6d", "suiteness": 0.524, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 250.418, 188.439, 156.061 ], "x_axis": [ 0.784, -0.561, -0.266 ], "y_axis": [ -0.438, -0.803, 0.404 ], "z_axis": [ -0.440, -0.200, -0.875 ], "quaternion": [ 0.162, 0.930, -0.268, -0.190 ] } }, { "index": 361, "index_chain": 361, "chain_name": "2", "nt_resnum": 437, "nt_name": "G", "nt_code": "G", "nt_id": "///2/437", "linked_nts": [ "///2/436", "///2/438" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -42.662, "beta": 159.286, "gamma": 39.797, "delta": 86.046, "epsilon": -143.409, "zeta": -93.388, "epsilon_zeta": -50.021, "bb_type": "BI", "chi": -140.693, "glyco_bond": "anti", "C5prime_xyz": [ -1.463, 8.756, -0.536 ], "P_xyz": [ 1.147, 9.065, -0.413 ], "form": ".", "ssZp": 3.587, "Dp": 4.471, "splay_angle": 31.347, "splay_distance": 5.187, "splay_ratio": 0.306, "d22": null, "d64": null, "eta": 171.595, "theta": -121.688, "eta_prime": -176.482, "theta_prime": -137.773, "eta_base": -149.321, "theta_base": -69.014, "v0": 0.798, "v1": -20.322, "v2": 30.993, "v3": -31.437, "v4": 19.342, "amplitude": 32.456, "phase_angle": 17.273, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.359, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 249.192, 188.414, 153.258 ], "x_axis": [ 0.549, -0.835, 0.020 ], "y_axis": [ -0.794, -0.515, 0.323 ], "z_axis": [ -0.260, -0.193, -0.946 ], "quaternion": [ 0.149, 0.868, -0.470, -0.069 ] } }, { "index": 362, "index_chain": 362, "chain_name": "2", "nt_resnum": 438, "nt_name": "G", "nt_code": "G", "nt_id": "///2/438", "linked_nts": [ "///2/437", "///2/439" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 113.193, "beta": -147.976, "gamma": -159.795, "delta": 81.122, "epsilon": -107.078, "zeta": -88.624, "epsilon_zeta": -18.454, "bb_type": "--", "chi": 21.082, "glyco_bond": "syn", "C5prime_xyz": [ -5.363, 3.446, -0.528 ], "P_xyz": [ -6.794, 2.134, 1.222 ], "form": ".", "ssZp": -4.129, "Dp": 4.721, "splay_angle": 39.404, "splay_distance": 5.993, "splay_ratio": 0.345, "d22": null, "d64": null, "eta": 157.533, "theta": -159.865, "eta_prime": 165.322, "theta_prime": -149.289, "eta_base": -102.704, "theta_base": -171.629, "v0": 2.743, "v1": -24.766, "v2": 36.196, "v3": -35.629, "v4": 20.720, "amplitude": 37.389, "phase_angle": 14.515, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 246.881, 184.043, 151.690 ], "x_axis": [ 0.989, 0.126, -0.081 ], "y_axis": [ -0.147, 0.920, -0.364 ], "z_axis": [ 0.028, 0.372, 0.928 ], "quaternion": [ 0.979, -0.188, 0.028, 0.070 ] } }, { "index": 363, "index_chain": 363, "chain_name": "2", "nt_resnum": 439, "nt_name": "A", "nt_code": "A", "nt_id": "///2/439", "linked_nts": [ "///2/438", "///2/440" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -52.941, "beta": 163.095, "gamma": 49.990, "delta": 79.957, "epsilon": -153.437, "zeta": -75.476, "epsilon_zeta": -77.961, "bb_type": "BI", "chi": -167.451, "glyco_bond": "anti", "C5prime_xyz": [ -1.690, 8.695, 0.946 ], "P_xyz": [ 0.841, 9.236, 1.319 ], "form": "A", "ssZp": 4.504, "Dp": 4.560, "splay_angle": 22.265, "splay_distance": 3.577, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 161.284, "theta": -149.975, "eta_prime": -178.564, "theta_prime": -150.121, "eta_base": 166.852, "theta_base": -127.190, "v0": -0.294, "v1": -22.502, "v2": 35.431, "v3": -36.587, "v4": 23.256, "amplitude": 37.482, "phase_angle": 19.041, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.190, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 249.943, 183.055, 146.634 ], "x_axis": [ -0.241, -0.418, 0.876 ], "y_axis": [ -0.879, 0.476, -0.015 ], "z_axis": [ -0.411, -0.774, -0.482 ], "quaternion": [ -0.434, -0.437, 0.741, -0.266 ] } }, { "index": 364, "index_chain": 364, "chain_name": "2", "nt_resnum": 440, "nt_name": "G", "nt_code": "G", "nt_id": "///2/440", "linked_nts": [ "///2/439", "///2/441" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -58.597, "beta": 169.140, "gamma": 53.328, "delta": 80.414, "epsilon": -149.596, "zeta": -75.715, "epsilon_zeta": -73.881, "bb_type": "BI", "chi": -164.359, "glyco_bond": "anti", "C5prime_xyz": [ -1.604, 8.778, 0.766 ], "P_xyz": [ 0.938, 9.334, 1.070 ], "form": "A", "ssZp": 4.467, "Dp": 4.586, "splay_angle": 25.369, "splay_distance": 4.092, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 170.951, "theta": -147.776, "eta_prime": -176.762, "theta_prime": -146.307, "eta_base": -139.797, "theta_base": -121.460, "v0": 0.212, "v1": -22.712, "v2": 35.306, "v3": -36.174, "v4": 22.667, "amplitude": 37.184, "phase_angle": 18.291, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.939, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 250.185, 179.642, 145.592 ], "x_axis": [ -0.651, -0.119, 0.749 ], "y_axis": [ -0.654, 0.589, -0.475 ], "z_axis": [ -0.385, -0.799, -0.461 ], "quaternion": [ -0.345, -0.235, 0.822, -0.388 ] } }, { "index": 365, "index_chain": 365, "chain_name": "2", "nt_resnum": 441, "nt_name": "C", "nt_code": "C", "nt_id": "///2/441", "linked_nts": [ "///2/440", "///2/442" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -58.201, "beta": 165.402, "gamma": 62.257, "delta": 80.280, "epsilon": -166.091, "zeta": -86.230, "epsilon_zeta": -79.861, "bb_type": "BI", "chi": -162.737, "glyco_bond": "anti", "C5prime_xyz": [ -1.587, 8.866, 0.645 ], "P_xyz": [ 0.964, 9.454, 0.681 ], "form": ".", "ssZp": 4.311, "Dp": 4.393, "splay_angle": 33.791, "splay_distance": 5.296, "splay_ratio": 0.291, "d22": 5.402, "d64": 5.844, "eta": 174.353, "theta": -170.248, "eta_prime": -168.736, "theta_prime": -171.897, "eta_base": -129.297, "theta_base": -161.690, "v0": -2.464, "v1": -20.081, "v2": 33.662, "v3": -36.038, "v4": 24.294, "amplitude": 36.411, "phase_angle": 22.406, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.826, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 249.223, 175.675, 145.303 ], "x_axis": [ -0.901, 0.195, 0.389 ], "y_axis": [ -0.225, 0.557, -0.800 ], "z_axis": [ -0.372, -0.808, -0.457 ], "quaternion": [ -0.223, -0.009, 0.854, -0.471 ] } }, { "index": 366, "index_chain": 366, "chain_name": "2", "nt_resnum": 442, "nt_name": "C", "nt_code": "C", "nt_id": "///2/442", "linked_nts": [ "///2/441", "///2/443" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -59.533, "beta": 177.287, "gamma": 53.806, "delta": 82.612, "epsilon": -143.158, "zeta": -69.791, "epsilon_zeta": -73.367, "bb_type": "BI", "chi": -172.746, "glyco_bond": "anti", "C5prime_xyz": [ -1.413, 8.649, 1.274 ], "P_xyz": [ 1.048, 8.923, 2.137 ], "form": "A", "ssZp": 4.506, "Dp": 4.569, "splay_angle": 22.787, "splay_distance": 3.588, "splay_ratio": 0.198, "d22": 4.118, "d64": 3.852, "eta": -178.588, "theta": -136.439, "eta_prime": -177.553, "theta_prime": -133.474, "eta_base": -164.342, "theta_base": -93.015, "v0": 0.395, "v1": -21.783, "v2": 33.637, "v3": -34.339, "v4": 21.421, "amplitude": 35.362, "phase_angle": 17.972, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.698, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 250.514, 170.661, 144.190 ], "x_axis": [ -0.868, 0.425, 0.257 ], "y_axis": [ 0.083, 0.634, -0.769 ], "z_axis": [ -0.490, -0.646, -0.585 ], "quaternion": [ -0.212, 0.145, 0.878, -0.403 ] } }, { "index": 367, "index_chain": 367, "chain_name": "2", "nt_resnum": 443, "nt_name": "U", "nt_code": "U", "nt_id": "///2/443", "linked_nts": [ "///2/442", "///2/444" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -63.978, "beta": 172.953, "gamma": 49.742, "delta": 83.005, "epsilon": -132.198, "zeta": -73.020, "epsilon_zeta": -59.178, "bb_type": "BI", "chi": -159.935, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.711, 0.543 ], "P_xyz": [ 1.231, 9.061, 0.917 ], "form": ".", "ssZp": 4.328, "Dp": 4.668, "splay_angle": 32.337, "splay_distance": 5.040, "splay_ratio": 0.279, "d22": null, "d64": null, "eta": 167.437, "theta": -128.634, "eta_prime": -176.231, "theta_prime": -123.069, "eta_base": -121.504, "theta_base": -73.420, "v0": 2.165, "v1": -23.393, "v2": 34.519, "v3": -34.225, "v4": 20.232, "amplitude": 35.773, "phase_angle": 15.217, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.959, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 247.563, 168.845, 143.255 ], "x_axis": [ -0.559, 0.769, -0.310 ], "y_axis": [ 0.623, 0.143, -0.769 ], "z_axis": [ -0.547, -0.623, -0.559 ], "quaternion": [ -0.079, 0.463, 0.752, -0.463 ] } }, { "index": 368, "index_chain": 368, "chain_name": "2", "nt_resnum": 444, "nt_name": "G", "nt_code": "G", "nt_id": "///2/444", "linked_nts": [ "///2/443", "///2/445" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -54.266, "beta": 156.781, "gamma": 53.393, "delta": 81.784, "epsilon": -132.757, "zeta": -75.685, "epsilon_zeta": -57.072, "bb_type": "BI", "chi": -162.586, "glyco_bond": "anti", "C5prime_xyz": [ -1.159, 8.665, 0.676 ], "P_xyz": [ 1.454, 8.721, 0.461 ], "form": ".", "ssZp": 4.470, "Dp": 4.755, "splay_angle": 80.091, "splay_distance": 11.524, "splay_ratio": 0.643, "d22": null, "d64": null, "eta": 165.190, "theta": -106.011, "eta_prime": -170.734, "theta_prime": -151.357, "eta_base": -102.503, "theta_base": 145.278, "v0": 5.166, "v1": -26.514, "v2": 36.678, "v3": -34.704, "v4": 18.655, "amplitude": 37.349, "phase_angle": 10.871, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.729, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 244.653, 169.583, 139.207 ], "x_axis": [ 0.261, 0.628, -0.733 ], "y_axis": [ 0.772, -0.591, -0.232 ], "z_axis": [ -0.579, -0.506, -0.640 ], "quaternion": [ 0.087, 0.789, 0.444, -0.416 ] } }, { "index": 369, "index_chain": 369, "chain_name": "2", "nt_resnum": 445, "nt_name": "A", "nt_code": "A", "nt_id": "///2/445", "linked_nts": [ "///2/444", "///2/446" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": 157.978, "beta": 174.272, "gamma": 50.342, "delta": 76.611, "epsilon": 115.146, "zeta": 57.433, "epsilon_zeta": 57.714, "bb_type": "--", "chi": -155.612, "glyco_bond": "anti", "C5prime_xyz": [ -1.103, 8.638, 0.296 ], "P_xyz": [ 1.511, 8.808, 0.390 ], "form": ".", "ssZp": 3.660, "Dp": 3.763, "splay_angle": 27.983, "splay_distance": 4.477, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 21.976, "theta": -109.504, "eta_prime": 55.902, "theta_prime": -118.929, "eta_base": 33.675, "theta_base": -66.007, "v0": 7.122, "v1": -28.967, "v2": 38.745, "v3": -35.671, "v4": 18.093, "amplitude": 39.169, "phase_angle": 8.431, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.702, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 241.689, 159.147, 143.092 ], "x_axis": [ 0.868, -0.334, 0.367 ], "y_axis": [ 0.463, 0.278, -0.841 ], "z_axis": [ 0.179, 0.901, 0.396 ], "quaternion": [ 0.797, -0.546, -0.059, -0.250 ] } }, { "index": 370, "index_chain": 370, "chain_name": "2", "nt_resnum": 446, "nt_name": "G", "nt_code": "G", "nt_id": "///2/446", "linked_nts": [ "///2/445", "///2/447" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -146.391, "beta": 160.466, "gamma": 68.339, "delta": 79.967, "epsilon": -104.645, "zeta": -126.990, "epsilon_zeta": 22.345, "bb_type": "--", "chi": -152.974, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.833, 0.083 ], "P_xyz": [ 1.034, 9.243, -0.688 ], "form": ".", "ssZp": 3.762, "Dp": 4.718, "splay_angle": 40.762, "splay_distance": 6.580, "splay_ratio": 0.349, "d22": null, "d64": null, "eta": 154.770, "theta": -134.309, "eta_prime": -175.419, "theta_prime": -122.550, "eta_base": -101.459, "theta_base": -120.787, "v0": 1.147, "v1": -23.682, "v2": 35.974, "v3": -36.311, "v4": 22.180, "amplitude": 37.600, "phase_angle": 16.911, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 245.405, 161.321, 144.318 ], "x_axis": [ 0.876, 0.071, -0.476 ], "y_axis": [ -0.434, 0.546, -0.717 ], "z_axis": [ 0.209, 0.835, 0.509 ], "quaternion": [ 0.856, -0.453, 0.200, 0.148 ] } }, { "index": 371, "index_chain": 371, "chain_name": "2", "nt_resnum": 447, "nt_name": "A", "nt_code": "A", "nt_id": "///2/447", "linked_nts": [ "///2/446", "///2/448" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate", "alpha": 42.845, "beta": 155.301, "gamma": -9.672, "delta": 146.355, "epsilon": -92.748, "zeta": -89.973, "epsilon_zeta": -2.776, "bb_type": "--", "chi": -56.222, "glyco_bond": "--", "C5prime_xyz": [ -3.387, 6.258, -3.169 ], "P_xyz": [ -1.803, 7.726, -4.650 ], "form": ".", "ssZp": -0.197, "Dp": 0.890, "splay_angle": 84.110, "splay_distance": 13.303, "splay_ratio": 0.670, "d22": null, "d64": null, "eta": -142.818, "theta": -101.584, "eta_prime": -132.451, "theta_prime": -110.548, "eta_base": -139.780, "theta_base": -70.680, "v0": -19.504, "v1": 33.712, "v2": -34.316, "v3": 23.936, "v4": -2.992, "amplitude": 35.363, "phase_angle": 166.023, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 248.098, 167.089, 145.982 ], "x_axis": [ 0.685, -0.105, -0.721 ], "y_axis": [ -0.489, 0.669, -0.561 ], "z_axis": [ 0.541, 0.736, 0.407 ], "quaternion": [ 0.831, -0.390, 0.380, 0.116 ] } }, { "index": 372, "index_chain": 372, "chain_name": "2", "nt_resnum": 448, "nt_name": "A", "nt_code": "A", "nt_id": "///2/448", "linked_nts": [ "///2/447", "///2/449" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-pair-contact,hairpin-loop", "alpha": -90.532, "beta": 80.528, "gamma": -172.550, "delta": 145.754, "epsilon": -111.212, "zeta": 86.093, "epsilon_zeta": 162.696, "bb_type": "--", "chi": -78.456, "glyco_bond": "--", "C5prime_xyz": [ -2.934, 7.280, -2.802 ], "P_xyz": [ -4.702, 6.830, -4.686 ], "form": ".", "ssZp": 0.750, "Dp": 1.211, "splay_angle": 77.272, "splay_distance": 13.120, "splay_ratio": 0.625, "d22": null, "d64": null, "eta": -89.378, "theta": 37.706, "eta_prime": -86.518, "theta_prime": 67.652, "eta_base": -83.297, "theta_base": 87.526, "v0": -22.385, "v1": 36.062, "v2": -35.229, "v3": 23.228, "v4": -0.733, "amplitude": 36.968, "phase_angle": 162.356, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 244.551, 176.717, 137.516 ], "x_axis": [ -0.459, 0.647, -0.609 ], "y_axis": [ -0.482, 0.395, 0.782 ], "z_axis": [ 0.747, 0.652, 0.131 ], "quaternion": [ 0.516, 0.063, 0.656, 0.547 ] } }, { "index": 373, "index_chain": 373, "chain_name": "2", "nt_resnum": 449, "nt_name": "A", "nt_code": "A", "nt_id": "///2/449", "linked_nts": [ "///2/448", "///2/450" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate", "alpha": 42.497, "beta": 136.120, "gamma": -50.080, "delta": 149.621, "epsilon": -103.511, "zeta": -132.840, "epsilon_zeta": 29.328, "bb_type": "--", "chi": -135.254, "glyco_bond": "anti", "C5prime_xyz": [ -1.965, 8.650, -0.330 ], "P_xyz": [ -1.544, 10.496, 1.487 ], "form": ".", "ssZp": 0.992, "Dp": 0.987, "splay_angle": 74.732, "splay_distance": 12.532, "splay_ratio": 0.608, "d22": null, "d64": null, "eta": -145.951, "theta": -93.074, "eta_prime": -156.174, "theta_prime": -91.743, "eta_base": -156.919, "theta_base": -74.063, "v0": -21.078, "v1": 36.461, "v2": -36.990, "v3": 25.767, "v4": -3.161, "amplitude": 38.140, "phase_angle": 165.893, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.005, "origin": [ 250.577, 169.179, 146.404 ], "x_axis": [ 0.335, 0.260, -0.906 ], "y_axis": [ -0.716, 0.695, -0.065 ], "z_axis": [ 0.613, 0.670, 0.419 ], "quaternion": [ 0.782, -0.235, 0.485, 0.312 ] } }, { "index": 374, "index_chain": 374, "chain_name": "2", "nt_resnum": 450, "nt_name": "C", "nt_code": "C", "nt_id": "///2/450", "linked_nts": [ "///2/449", "///2/451" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 89.660, "beta": -85.694, "gamma": -125.803, "delta": 80.490, "epsilon": -117.934, "zeta": -115.649, "epsilon_zeta": -2.285, "bb_type": "--", "chi": -150.157, "glyco_bond": "anti", "C5prime_xyz": [ -1.538, 8.872, -0.098 ], "P_xyz": [ -2.604, 10.153, -2.123 ], "form": ".", "ssZp": 3.793, "Dp": 4.660, "splay_angle": 137.604, "splay_distance": 17.502, "splay_ratio": 0.932, "d22": null, "d64": null, "eta": -134.939, "theta": 158.730, "eta_prime": -113.782, "theta_prime": 155.610, "eta_base": -82.162, "theta_base": 150.027, "v0": -1.275, "v1": -21.300, "v2": 34.441, "v3": -36.156, "v4": 23.608, "amplitude": 36.782, "phase_angle": 20.551, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 252.219, 179.850, 152.766 ], "x_axis": [ -0.275, 0.707, 0.651 ], "y_axis": [ -0.811, -0.535, 0.238 ], "z_axis": [ 0.517, -0.462, 0.720 ], "quaternion": [ 0.477, 0.367, -0.070, 0.795 ] } }, { "index": 375, "index_chain": 375, "chain_name": "2", "nt_resnum": 451, "nt_name": "G", "nt_code": "G", "nt_id": "///2/451", "linked_nts": [ "///2/450", "///2/452" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 65.325, "beta": -179.302, "gamma": 62.184, "delta": 81.902, "epsilon": -178.445, "zeta": 139.159, "epsilon_zeta": 42.397, "bb_type": "--", "chi": -162.966, "glyco_bond": "anti", "C5prime_xyz": [ -1.228, 8.684, 0.705 ], "P_xyz": [ 1.376, 8.958, 0.838 ], "form": ".", "ssZp": 4.394, "Dp": 4.421, "splay_angle": 140.781, "splay_distance": 18.634, "splay_ratio": 0.943, "d22": null, "d64": null, "eta": -58.804, "theta": 78.001, "eta_prime": -40.064, "theta_prime": 33.150, "eta_base": -36.219, "theta_base": -45.575, "v0": 4.311, "v1": -25.818, "v2": 36.336, "v3": -34.864, "v4": 19.273, "amplitude": 37.164, "phase_angle": 12.116, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.743, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 250.294, 163.803, 159.482 ], "x_axis": [ -0.988, -0.147, -0.043 ], "y_axis": [ -0.128, 0.949, -0.288 ], "z_axis": [ 0.083, -0.279, -0.957 ], "quaternion": [ 0.032, -0.070, 0.987, -0.144 ] } }, { "index": 376, "index_chain": 376, "chain_name": "2", "nt_resnum": 452, "nt_name": "G", "nt_code": "G", "nt_id": "///2/452", "linked_nts": [ "///2/451", "///2/453" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": 49.151, "beta": 141.208, "gamma": 174.471, "delta": 80.936, "epsilon": -149.618, "zeta": -74.617, "epsilon_zeta": -75.001, "bb_type": "BI", "chi": -168.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.732, 1.029 ], "P_xyz": [ -1.163, 11.064, -0.111 ], "form": "A", "ssZp": 4.525, "Dp": 4.580, "splay_angle": 22.682, "splay_distance": 3.630, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 51.382, "theta": 165.842, "eta_prime": 71.113, "theta_prime": 179.817, "eta_base": 157.807, "theta_base": -144.931, "v0": 0.186, "v1": -22.368, "v2": 34.747, "v3": -35.600, "v4": 22.337, "amplitude": 36.599, "phase_angle": 18.307, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 249.322, 175.605, 145.095 ], "x_axis": [ -0.863, 0.254, 0.437 ], "y_axis": [ 0.254, -0.528, 0.810 ], "z_axis": [ 0.436, 0.810, 0.391 ], "quaternion": [ -0.000, 0.262, 0.486, 0.834 ] } }, { "index": 377, "index_chain": 377, "chain_name": "2", "nt_resnum": 453, "nt_name": "C", "nt_code": "C", "nt_id": "///2/453", "linked_nts": [ "///2/452", "///2/454" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.462, "beta": 169.217, "gamma": 54.709, "delta": 80.821, "epsilon": -151.036, "zeta": -76.263, "epsilon_zeta": -74.773, "bb_type": "BI", "chi": -163.292, "glyco_bond": "anti", "C5prime_xyz": [ -1.492, 8.799, 0.703 ], "P_xyz": [ 1.070, 9.297, 0.939 ], "form": "A", "ssZp": 4.451, "Dp": 4.569, "splay_angle": 26.485, "splay_distance": 4.214, "splay_ratio": 0.230, "d22": 4.722, "d64": 4.881, "eta": 170.038, "theta": -149.236, "eta_prime": -175.770, "theta_prime": -147.697, "eta_base": -134.596, "theta_base": -124.956, "v0": -0.246, "v1": -22.008, "v2": 34.607, "v3": -35.701, "v4": 22.682, "amplitude": 36.596, "phase_angle": 18.975, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.969, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 249.698, 179.203, 145.403 ], "x_axis": [ -0.586, -0.074, 0.807 ], "y_axis": [ 0.700, -0.547, 0.459 ], "z_axis": [ 0.408, 0.834, 0.372 ], "quaternion": [ -0.244, 0.384, 0.408, 0.791 ] } }, { "index": 378, "index_chain": 378, "chain_name": "2", "nt_resnum": 454, "nt_name": "U", "nt_code": "U", "nt_id": "///2/454", "linked_nts": [ "///2/453", "///2/455" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,ribose-zipper", "alpha": -59.824, "beta": 172.827, "gamma": 54.944, "delta": 80.663, "epsilon": -137.160, "zeta": -49.112, "epsilon_zeta": -88.048, "bb_type": "BI", "chi": -157.894, "glyco_bond": "anti", "C5prime_xyz": [ -1.470, 8.767, 0.393 ], "P_xyz": [ 1.099, 9.278, 0.473 ], "form": ".", "ssZp": 4.314, "Dp": 4.673, "splay_angle": 25.925, "splay_distance": 4.552, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 176.337, "theta": -120.934, "eta_prime": -172.992, "theta_prime": -138.910, "eta_base": -140.347, "theta_base": -138.457, "v0": 1.154, "v1": -23.373, "v2": 35.488, "v3": -35.805, "v4": 21.854, "amplitude": 37.085, "phase_angle": 16.876, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.959, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 249.946, 183.220, 146.649 ], "x_axis": [ -0.162, -0.356, 0.920 ], "y_axis": [ 0.904, -0.428, -0.007 ], "z_axis": [ 0.396, 0.831, 0.391 ], "quaternion": [ -0.448, 0.468, 0.293, 0.704 ] } }, { "index": 379, "index_chain": 379, "chain_name": "2", "nt_resnum": 455, "nt_name": "A", "nt_code": "A", "nt_id": "///2/455", "linked_nts": [ "///2/454", "///2/456" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper", "alpha": -153.535, "beta": 125.550, "gamma": 144.185, "delta": 82.383, "epsilon": -152.805, "zeta": -54.602, "epsilon_zeta": -98.203, "bb_type": "BI", "chi": 167.918, "glyco_bond": "anti", "C5prime_xyz": [ -1.876, 8.107, 2.241 ], "P_xyz": [ -0.724, 10.289, 1.343 ], "form": "A", "ssZp": 4.281, "Dp": 4.548, "splay_angle": 23.370, "splay_distance": 3.847, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 149.996, "theta": -166.234, "eta_prime": 161.034, "theta_prime": -157.446, "eta_base": 179.853, "theta_base": -125.073, "v0": 1.223, "v1": -22.942, "v2": 34.617, "v3": -34.885, "v4": 21.236, "amplitude": 36.141, "phase_angle": 16.696, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 249.299, 187.385, 148.368 ], "x_axis": [ -0.243, -0.891, 0.384 ], "y_axis": [ 0.865, -0.378, -0.329 ], "z_axis": [ 0.439, 0.252, 0.862 ], "quaternion": [ 0.557, -0.261, 0.024, -0.788 ] } }, { "index": 380, "index_chain": 380, "chain_name": "2", "nt_resnum": 456, "nt_name": "C", "nt_code": "C", "nt_id": "///2/456", "linked_nts": [ "///2/455", "///2/457" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -91.203, "beta": -141.569, "gamma": 45.008, "delta": 84.067, "epsilon": -150.927, "zeta": -81.869, "epsilon_zeta": -69.058, "bb_type": "BI", "chi": -141.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.154, 8.793, -0.506 ], "P_xyz": [ 1.135, 9.487, 0.587 ], "form": ".", "ssZp": 3.712, "Dp": 4.474, "splay_angle": 16.623, "splay_distance": 2.755, "splay_ratio": 0.147, "d22": 4.219, "d64": 3.636, "eta": 166.309, "theta": -154.857, "eta_prime": 177.819, "theta_prime": -149.038, "eta_base": -143.832, "theta_base": -120.965, "v0": 0.743, "v1": -21.129, "v2": 32.326, "v3": -32.730, "v4": 20.216, "amplitude": 33.866, "phase_angle": 17.346, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.403, "filter_rmsd": 0.064, "frame": { "rmsd": 0.008, "origin": [ 248.324, 187.856, 152.059 ], "x_axis": [ 0.421, -0.907, -0.017 ], "y_axis": [ 0.820, 0.388, -0.422 ], "z_axis": [ 0.389, 0.164, 0.907 ], "quaternion": [ 0.824, -0.178, 0.123, -0.524 ] } }, { "index": 381, "index_chain": 381, "chain_name": "2", "nt_resnum": 457, "nt_name": "C", "nt_code": "C", "nt_id": "///2/457", "linked_nts": [ "///2/456", "///2/458" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -57.200, "beta": 156.789, "gamma": 53.758, "delta": 83.480, "epsilon": -150.136, "zeta": -77.328, "epsilon_zeta": -72.808, "bb_type": "BI", "chi": -140.597, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.746, -0.648 ], "P_xyz": [ 1.000, 8.922, -1.257 ], "form": ".", "ssZp": 3.675, "Dp": 4.551, "splay_angle": 33.459, "splay_distance": 5.399, "splay_ratio": 0.288, "d22": null, "d64": null, "eta": 165.259, "theta": -144.155, "eta_prime": -179.281, "theta_prime": -146.967, "eta_base": -143.277, "theta_base": -122.408, "v0": 2.437, "v1": -23.289, "v2": 34.127, "v3": -33.661, "v4": 19.715, "amplitude": 35.290, "phase_angle": 14.749, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.791, "filter_rmsd": 0.064, "frame": { "rmsd": 0.016, "origin": [ 249.472, 188.005, 154.559 ], "x_axis": [ 0.706, -0.668, -0.235 ], "y_axis": [ 0.655, 0.742, -0.139 ], "z_axis": [ 0.267, -0.056, 0.962 ], "quaternion": [ 0.923, -0.022, 0.136, -0.358 ] } }, { "index": 382, "index_chain": 382, "chain_name": "2", "nt_resnum": 458, "nt_name": "A", "nt_code": "A", "nt_id": "///2/458", "linked_nts": [ "///2/457", "///2/459" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -56.837, "beta": 170.266, "gamma": 47.189, "delta": 81.877, "epsilon": -130.926, "zeta": -70.569, "epsilon_zeta": -60.357, "bb_type": "BI", "chi": 179.742, "glyco_bond": "anti", "C5prime_xyz": [ -1.698, 8.464, 1.678 ], "P_xyz": [ 0.654, 8.713, 2.808 ], "form": ".", "ssZp": 4.555, "Dp": 4.603, "splay_angle": 27.573, "splay_distance": 4.304, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 172.357, "theta": -126.527, "eta_prime": -177.924, "theta_prime": -121.896, "eta_base": -141.025, "theta_base": -68.048, "v0": -0.439, "v1": -21.318, "v2": 33.704, "v3": -34.908, "v4": 22.300, "amplitude": 35.711, "phase_angle": 19.301, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.873, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 252.234, 186.902, 159.065 ], "x_axis": [ 0.512, -0.192, -0.837 ], "y_axis": [ -0.081, 0.959, -0.270 ], "z_axis": [ 0.855, 0.206, 0.475 ], "quaternion": [ 0.858, -0.139, 0.493, -0.032 ] } }, { "index": 383, "index_chain": 383, "chain_name": "2", "nt_resnum": 459, "nt_name": "C", "nt_code": "C", "nt_id": "///2/459", "linked_nts": [ "///2/458", "///2/460" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -54.561, "beta": 164.501, "gamma": 44.584, "delta": 81.013, "epsilon": -142.901, "zeta": -79.314, "epsilon_zeta": -63.587, "bb_type": "BI", "chi": -165.363, "glyco_bond": "anti", "C5prime_xyz": [ -1.343, 8.727, 0.853 ], "P_xyz": [ 1.217, 9.003, 1.331 ], "form": "A", "ssZp": 4.501, "Dp": 4.642, "splay_angle": 23.995, "splay_distance": 3.727, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 159.542, "theta": -143.443, "eta_prime": -177.499, "theta_prime": -140.758, "eta_base": -103.123, "theta_base": -105.206, "v0": 1.676, "v1": -23.741, "v2": 35.569, "v3": -35.599, "v4": 21.398, "amplitude": 37.019, "phase_angle": 16.092, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.699, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 256.441, 187.315, 158.255 ], "x_axis": [ 0.196, 0.670, -0.716 ], "y_axis": [ -0.470, 0.705, 0.531 ], "z_axis": [ 0.861, 0.232, 0.453 ], "quaternion": [ 0.767, 0.098, 0.514, 0.371 ] } }, { "index": 384, "index_chain": 384, "chain_name": "2", "nt_resnum": 460, "nt_name": "A", "nt_code": "A", "nt_id": "///2/460", "linked_nts": [ "///2/459", "///2/461" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -51.924, "beta": 160.380, "gamma": 50.527, "delta": 80.810, "epsilon": -165.022, "zeta": -94.530, "epsilon_zeta": -70.492, "bb_type": "BI", "chi": -165.313, "glyco_bond": "anti", "C5prime_xyz": [ -1.304, 8.627, 0.841 ], "P_xyz": [ 1.306, 8.846, 0.914 ], "form": ".", "ssZp": 4.504, "Dp": 4.545, "splay_angle": 41.191, "splay_distance": 6.346, "splay_ratio": 0.354, "d22": null, "d64": null, "eta": 164.917, "theta": -176.899, "eta_prime": -175.961, "theta_prime": -177.655, "eta_base": -121.605, "theta_base": 178.094, "v0": 3.862, "v1": -25.778, "v2": 36.734, "v3": -35.520, "v4": 19.968, "amplitude": 37.682, "phase_angle": 12.878, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.781, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 259.948, 188.557, 158.468 ], "x_axis": [ -0.161, 0.954, -0.252 ], "y_axis": [ -0.469, 0.151, 0.870 ], "z_axis": [ 0.868, 0.258, 0.423 ], "quaternion": [ 0.594, 0.257, 0.471, 0.599 ] } }, { "index": 385, "index_chain": 385, "chain_name": "2", "nt_resnum": 461, "nt_name": "U", "nt_code": "U", "nt_id": "///2/461", "linked_nts": [ "///2/460", "///2/462" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.916, "beta": -174.500, "gamma": 41.981, "delta": 81.618, "epsilon": -149.444, "zeta": -81.993, "epsilon_zeta": -67.451, "bb_type": "BI", "chi": -166.750, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.645, 0.946 ], "P_xyz": [ 0.996, 9.077, 1.976 ], "form": "A", "ssZp": 4.520, "Dp": 4.608, "splay_angle": 24.284, "splay_distance": 3.801, "splay_ratio": 0.211, "d22": 4.697, "d64": 4.698, "eta": 179.232, "theta": -156.250, "eta_prime": 172.687, "theta_prime": -151.665, "eta_base": 166.220, "theta_base": -130.793, "v0": 2.527, "v1": -24.169, "v2": 35.422, "v3": -34.948, "v4": 20.459, "amplitude": 36.630, "phase_angle": 14.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.805, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 264.889, 184.596, 158.881 ], "x_axis": [ -0.421, 0.821, -0.385 ], "y_axis": [ -0.515, 0.133, 0.847 ], "z_axis": [ 0.747, 0.555, 0.367 ], "quaternion": [ 0.519, 0.141, 0.545, 0.643 ] } }, { "index": 386, "index_chain": 386, "chain_name": "2", "nt_resnum": 462, "nt_name": "C", "nt_code": "C", "nt_id": "///2/462", "linked_nts": [ "///2/461", "///2/463" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -57.238, "beta": 172.153, "gamma": 47.823, "delta": 81.354, "epsilon": -141.325, "zeta": -72.872, "epsilon_zeta": -68.453, "bb_type": "BI", "chi": -163.721, "glyco_bond": "anti", "C5prime_xyz": [ -1.248, 8.711, 0.760 ], "P_xyz": [ 1.320, 9.010, 1.193 ], "form": "A", "ssZp": 4.497, "Dp": 4.675, "splay_angle": 24.333, "splay_distance": 3.860, "splay_ratio": 0.212, "d22": 4.131, "d64": 4.206, "eta": 171.625, "theta": -138.418, "eta_prime": 179.507, "theta_prime": -134.910, "eta_base": -152.887, "theta_base": -99.526, "v0": 3.033, "v1": -24.843, "v2": 36.011, "v3": -35.262, "v4": 20.331, "amplitude": 37.120, "phase_angle": 14.041, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.852, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 268.408, 186.022, 158.700 ], "x_axis": [ -0.696, 0.718, 0.020 ], "y_axis": [ -0.245, -0.262, 0.933 ], "z_axis": [ 0.676, 0.645, 0.358 ], "quaternion": [ 0.316, 0.228, 0.518, 0.761 ] } }, { "index": 387, "index_chain": 387, "chain_name": "2", "nt_resnum": 463, "nt_name": "C", "nt_code": "C", "nt_id": "///2/463", "linked_nts": [ "///2/462", "///2/464" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart", "alpha": -58.817, "beta": 165.363, "gamma": 56.913, "delta": 80.676, "epsilon": -138.529, "zeta": -130.238, "epsilon_zeta": -8.291, "bb_type": "--", "chi": -158.546, "glyco_bond": "anti", "C5prime_xyz": [ -1.393, 8.811, 0.429 ], "P_xyz": [ 1.193, 9.216, 0.305 ], "form": ".", "ssZp": 4.342, "Dp": 4.667, "splay_angle": 114.141, "splay_distance": 13.073, "splay_ratio": 0.845, "d22": null, "d64": null, "eta": 170.751, "theta": -170.559, "eta_prime": -171.788, "theta_prime": 155.204, "eta_base": -121.624, "theta_base": 85.037, "v0": 0.891, "v1": -23.202, "v2": 35.443, "v3": -35.924, "v4": 22.098, "amplitude": 37.118, "phase_angle": 17.278, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.062, "frame": { "rmsd": 0.001, "origin": [ 269.433, 189.703, 159.245 ], "x_axis": [ -0.727, 0.367, 0.580 ], "y_axis": [ 0.311, -0.578, 0.755 ], "z_axis": [ 0.612, 0.729, 0.306 ], "quaternion": [ 0.017, 0.369, 0.459, 0.808 ] } }, { "index": 388, "index_chain": 388, "chain_name": "2", "nt_resnum": 464, "nt_name": "A", "nt_code": "A", "nt_id": "///2/464", "linked_nts": [ "///2/463", "///2/465" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 52.284, "beta": 177.101, "gamma": 170.412, "delta": 145.917, "epsilon": -82.393, "zeta": -97.240, "epsilon_zeta": 14.847, "bb_type": "--", "chi": 47.120, "glyco_bond": "syn", "C5prime_xyz": [ -5.358, 3.550, 0.498 ], "P_xyz": [ -5.819, 1.438, 1.982 ], "form": ".", "ssZp": -0.599, "Dp": 0.676, "splay_angle": 82.260, "splay_distance": 12.334, "splay_ratio": 0.660, "d22": null, "d64": null, "eta": 102.342, "theta": -75.478, "eta_prime": 86.479, "theta_prime": -55.440, "eta_base": 78.578, "theta_base": -29.871, "v0": -19.522, "v1": 33.595, "v2": -34.060, "v3": 23.659, "v4": -2.798, "amplitude": 35.144, "phase_angle": 165.731, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 279.014, 181.913, 163.537 ], "x_axis": [ 0.711, -0.703, -0.004 ], "y_axis": [ 0.643, 0.653, -0.400 ], "z_axis": [ 0.284, 0.282, 0.916 ], "quaternion": [ 0.906, -0.188, 0.080, -0.372 ] } }, { "index": 389, "index_chain": 389, "chain_name": "2", "nt_resnum": 465, "nt_name": "A", "nt_code": "A", "nt_id": "///2/465", "linked_nts": [ "///2/464", "///2/466" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor", "alpha": 44.008, "beta": 115.416, "gamma": 19.209, "delta": 146.158, "epsilon": -148.439, "zeta": 139.688, "epsilon_zeta": 71.873, "bb_type": "--", "chi": -146.843, "glyco_bond": "anti", "C5prime_xyz": [ -1.943, 8.750, 0.225 ], "P_xyz": [ -0.167, 8.465, 2.161 ], "form": "Z", "ssZp": 1.492, "Dp": 1.853, "splay_angle": 45.872, "splay_distance": 6.784, "splay_ratio": 0.407, "d22": null, "d64": null, "eta": 157.666, "theta": 152.425, "eta_prime": -141.983, "theta_prime": 91.880, "eta_base": -135.218, "theta_base": 77.658, "v0": -22.529, "v1": 36.610, "v2": -35.893, "v3": 23.836, "v4": -1.036, "amplitude": 37.580, "phase_angle": 162.766, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 271.051, 191.315, 162.973 ], "x_axis": [ 0.282, -0.469, 0.837 ], "y_axis": [ 0.872, -0.239, -0.427 ], "z_axis": [ 0.401, 0.850, 0.341 ], "quaternion": [ 0.588, -0.543, -0.185, -0.570 ] } }, { "index": 390, "index_chain": 390, "chain_name": "2", "nt_resnum": 466, "nt_name": "G", "nt_code": "G", "nt_id": "///2/466", "linked_nts": [ "///2/465", "///2/467" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,phosphate", "alpha": 40.501, "beta": -125.159, "gamma": 176.109, "delta": 81.282, "epsilon": -151.332, "zeta": -61.532, "epsilon_zeta": -89.800, "bb_type": "BI", "chi": 60.568, "glyco_bond": "syn", "C5prime_xyz": [ -5.184, 4.068, 1.792 ], "P_xyz": [ -4.467, 3.818, 4.307 ], "form": ".", "ssZp": -2.562, "Dp": 4.546, "splay_angle": 31.468, "splay_distance": 5.086, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 106.798, "theta": -112.138, "eta_prime": 104.218, "theta_prime": -117.366, "eta_base": 130.539, "theta_base": -133.625, "v0": -0.180, "v1": -21.875, "v2": 34.300, "v3": -35.352, "v4": 22.415, "amplitude": 36.247, "phase_angle": 18.865, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 273.360, 187.537, 157.833 ], "x_axis": [ 0.495, -0.669, 0.554 ], "y_axis": [ 0.774, 0.051, -0.631 ], "z_axis": [ 0.394, 0.741, 0.544 ], "quaternion": [ 0.723, -0.474, -0.055, -0.499 ] } }, { "index": 391, "index_chain": 391, "chain_name": "2", "nt_resnum": 467, "nt_name": "G", "nt_code": "G", "nt_id": "///2/467", "linked_nts": [ "///2/466", "///2/468" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 172.573, "beta": -139.649, "gamma": 168.931, "delta": 81.336, "epsilon": -146.540, "zeta": -67.856, "epsilon_zeta": -78.684, "bb_type": "BI", "chi": -163.593, "glyco_bond": "anti", "C5prime_xyz": [ -1.177, 8.645, 0.729 ], "P_xyz": [ 0.415, 9.559, -1.146 ], "form": "A", "ssZp": 4.546, "Dp": 4.703, "splay_angle": 21.865, "splay_distance": 3.550, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 176.627, "theta": -152.168, "eta_prime": -144.966, "theta_prime": -157.225, "eta_base": -123.533, "theta_base": -135.201, "v0": 5.807, "v1": -27.492, "v2": 37.575, "v3": -35.239, "v4": 18.576, "amplitude": 38.162, "phase_angle": 10.060, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.459, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 268.641, 185.986, 158.928 ], "x_axis": [ -0.609, 0.790, 0.062 ], "y_axis": [ 0.307, 0.307, -0.901 ], "z_axis": [ -0.731, -0.530, -0.429 ], "quaternion": [ -0.259, 0.358, 0.766, -0.467 ] } }, { "index": 392, "index_chain": 392, "chain_name": "2", "nt_resnum": 468, "nt_name": "A", "nt_code": "A", "nt_id": "///2/468", "linked_nts": [ "///2/467", "///2/469" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -69.280, "beta": 168.670, "gamma": 64.642, "delta": 77.925, "epsilon": -145.427, "zeta": -75.177, "epsilon_zeta": -70.251, "bb_type": "BI", "chi": -162.460, "glyco_bond": "anti", "C5prime_xyz": [ -1.683, 8.762, 0.618 ], "P_xyz": [ 0.820, 9.483, 0.368 ], "form": ".", "ssZp": 4.492, "Dp": 4.670, "splay_angle": 29.520, "splay_distance": 4.580, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 168.253, "theta": -146.726, "eta_prime": -175.111, "theta_prime": -144.339, "eta_base": -134.879, "theta_base": -109.912, "v0": 0.111, "v1": -23.767, "v2": 37.046, "v3": -38.014, "v4": 23.887, "amplitude": 39.052, "phase_angle": 18.443, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.761, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 265.237, 185.010, 159.174 ], "x_axis": [ -0.342, 0.861, -0.376 ], "y_axis": [ 0.460, -0.196, -0.866 ], "z_axis": [ -0.819, -0.469, -0.329 ], "quaternion": [ -0.182, 0.544, 0.607, -0.550 ] } }, { "index": 393, "index_chain": 393, "chain_name": "2", "nt_resnum": 469, "nt_name": "A", "nt_code": "A", "nt_id": "///2/469", "linked_nts": [ "///2/468", "///2/470" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -61.364, "beta": 161.782, "gamma": 66.996, "delta": 80.834, "epsilon": -151.623, "zeta": -45.315, "epsilon_zeta": -106.308, "bb_type": "BI", "chi": -164.488, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.656, 0.785 ], "P_xyz": [ 1.203, 9.023, 0.391 ], "form": ".", "ssZp": 4.539, "Dp": 4.644, "splay_angle": 22.407, "splay_distance": 4.392, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 173.450, "theta": -119.847, "eta_prime": -167.878, "theta_prime": -139.907, "eta_base": -116.936, "theta_base": -161.905, "v0": 3.303, "v1": -25.448, "v2": 36.700, "v3": -35.777, "v4": 20.508, "amplitude": 37.775, "phase_angle": 13.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.652, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 260.963, 185.099, 157.532 ], "x_axis": [ 0.021, 0.519, -0.854 ], "y_axis": [ 0.565, -0.711, -0.418 ], "z_axis": [ -0.825, -0.474, -0.308 ], "quaternion": [ 0.020, 0.714, 0.380, -0.588 ] } }, { "index": 394, "index_chain": 394, "chain_name": "2", "nt_resnum": 470, "nt_name": "G", "nt_code": "G", "nt_id": "///2/470", "linked_nts": [ "///2/469", "///2/471" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -167.316, "beta": 136.757, "gamma": 165.069, "delta": 83.670, "epsilon": -134.114, "zeta": -121.421, "epsilon_zeta": -12.693, "bb_type": "--", "chi": -156.888, "glyco_bond": "anti", "C5prime_xyz": [ -1.637, 8.879, 0.335 ], "P_xyz": [ -1.273, 10.760, -1.458 ], "form": ".", "ssZp": 4.091, "Dp": 4.466, "splay_angle": 25.499, "splay_distance": 4.116, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 168.637, "theta": 143.595, "eta_prime": 173.564, "theta_prime": 167.789, "eta_base": 166.102, "theta_base": -166.199, "v0": -3.194, "v1": -17.816, "v2": 30.715, "v3": -33.486, "v4": 23.174, "amplitude": 33.616, "phase_angle": 23.975, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.458, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 257.015, 186.153, 159.143 ], "x_axis": [ 0.256, 0.526, -0.811 ], "y_axis": [ 0.278, -0.844, -0.459 ], "z_axis": [ -0.926, -0.108, -0.362 ], "quaternion": [ -0.112, 0.784, 0.256, -0.554 ] } }, { "index": 395, "index_chain": 395, "chain_name": "2", "nt_resnum": 471, "nt_name": "G", "nt_code": "G", "nt_id": "///2/471", "linked_nts": [ "///2/470", "///2/472" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -35.067, "beta": 134.959, "gamma": 66.873, "delta": 146.681, "epsilon": -87.760, "zeta": -114.649, "epsilon_zeta": 26.889, "bb_type": "--", "chi": -125.756, "glyco_bond": "anti", "C5prime_xyz": [ -1.805, 8.657, -0.898 ], "P_xyz": [ 0.807, 8.443, -0.976 ], "form": ".", "ssZp": 0.643, "Dp": 0.709, "splay_angle": 123.760, "splay_distance": 17.190, "splay_ratio": 0.882, "d22": null, "d64": null, "eta": -148.906, "theta": -127.292, "eta_prime": -126.169, "theta_prime": 153.265, "eta_base": -118.426, "theta_base": 122.519, "v0": -20.662, "v1": 34.907, "v2": -35.030, "v3": 24.012, "v4": -2.310, "amplitude": 36.296, "phase_angle": 164.822, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 253.019, 185.439, 158.460 ], "x_axis": [ 0.387, 0.170, -0.906 ], "y_axis": [ 0.043, -0.985, -0.167 ], "z_axis": [ -0.921, 0.026, -0.388 ], "quaternion": [ -0.058, 0.831, 0.064, -0.550 ] } }, { "index": 396, "index_chain": 396, "chain_name": "2", "nt_resnum": 472, "nt_name": "C", "nt_code": "C", "nt_id": "///2/472", "linked_nts": [ "///2/471", "///2/473" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart", "alpha": -97.293, "beta": -104.235, "gamma": 177.865, "delta": 81.890, "epsilon": -147.309, "zeta": -168.345, "epsilon_zeta": 21.036, "bb_type": "--", "chi": -159.488, "glyco_bond": "anti", "C5prime_xyz": [ -1.311, 8.775, 0.491 ], "P_xyz": [ -0.157, 9.102, -1.841 ], "form": ".", "ssZp": 4.398, "Dp": 4.624, "splay_angle": 150.399, "splay_distance": 17.321, "splay_ratio": 0.967, "d22": null, "d64": null, "eta": -7.686, "theta": 131.598, "eta_prime": 56.586, "theta_prime": 85.384, "eta_base": 90.885, "theta_base": 9.790, "v0": 1.875, "v1": -23.611, "v2": 35.142, "v3": -35.035, "v4": 20.935, "amplitude": 36.511, "phase_angle": 15.741, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 252.145, 173.625, 170.916 ], "x_axis": [ 0.745, 0.662, 0.079 ], "y_axis": [ -0.289, 0.428, -0.856 ], "z_axis": [ -0.601, 0.615, 0.510 ], "quaternion": [ 0.819, -0.449, -0.207, 0.290 ] } }, { "index": 397, "index_chain": 397, "chain_name": "2", "nt_resnum": 473, "nt_name": "A", "nt_code": "A", "nt_id": "///2/473", "linked_nts": [ "///2/472", "///2/474" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper,phosphate,splayed-apart", "alpha": 70.746, "beta": -139.957, "gamma": 66.107, "delta": 81.812, "epsilon": -153.097, "zeta": -161.545, "epsilon_zeta": 8.448, "bb_type": "--", "chi": -174.232, "glyco_bond": "anti", "C5prime_xyz": [ -1.504, 8.511, 1.351 ], "P_xyz": [ 0.812, 8.453, 2.577 ], "form": ".", "ssZp": 4.594, "Dp": 4.604, "splay_angle": 144.501, "splay_distance": 17.221, "splay_ratio": 0.953, "d22": null, "d64": null, "eta": 4.917, "theta": 114.141, "eta_prime": 4.658, "theta_prime": 105.364, "eta_base": 64.670, "theta_base": -75.725, "v0": 2.778, "v1": -24.546, "v2": 35.743, "v3": -35.140, "v4": 20.408, "amplitude": 36.901, "phase_angle": 14.390, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.186, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 241.353, 180.234, 159.088 ], "x_axis": [ 0.601, 0.797, 0.067 ], "y_axis": [ 0.170, -0.209, 0.963 ], "z_axis": [ 0.781, -0.567, -0.261 ], "quaternion": [ 0.532, 0.720, 0.336, 0.295 ] } }, { "index": 398, "index_chain": 398, "chain_name": "2", "nt_resnum": 474, "nt_name": "G", "nt_code": "G", "nt_id": "///2/474", "linked_nts": [ "///2/473", "///2/475" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,ribose-zipper,phosphate,splayed-apart", "alpha": -46.436, "beta": -154.077, "gamma": 152.906, "delta": 83.846, "epsilon": -143.653, "zeta": -73.207, "epsilon_zeta": -70.446, "bb_type": "BI", "chi": -178.407, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.432, 1.627 ], "P_xyz": [ 0.772, 9.512, 0.760 ], "form": "A", "ssZp": 4.573, "Dp": 4.611, "splay_angle": 23.397, "splay_distance": 3.705, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": -25.014, "theta": -150.631, "eta_prime": -23.858, "theta_prime": -152.993, "eta_base": 167.452, "theta_base": -128.063, "v0": 3.322, "v1": -23.885, "v2": 34.190, "v3": -33.274, "v4": 18.913, "amplitude": 35.141, "phase_angle": 13.354, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 251.436, 168.291, 166.319 ], "x_axis": [ 0.512, 0.856, -0.069 ], "y_axis": [ -0.816, 0.459, -0.351 ], "z_axis": [ -0.269, 0.236, 0.934 ], "quaternion": [ 0.852, -0.172, -0.059, 0.491 ] } }, { "index": 399, "index_chain": 399, "chain_name": "2", "nt_resnum": 475, "nt_name": "C", "nt_code": "C", "nt_id": "///2/475", "linked_nts": [ "///2/474", "///2/476" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.144, "beta": -179.397, "gamma": 46.959, "delta": 81.816, "epsilon": -141.596, "zeta": -68.918, "epsilon_zeta": -72.679, "bb_type": "BI", "chi": -160.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.757, 0.590 ], "P_xyz": [ 1.238, 9.168, 1.199 ], "form": ".", "ssZp": 4.404, "Dp": 4.642, "splay_angle": 21.137, "splay_distance": 3.752, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 169.267, "theta": -109.345, "eta_prime": -178.659, "theta_prime": -122.680, "eta_base": -140.129, "theta_base": -99.161, "v0": 1.948, "v1": -23.447, "v2": 34.868, "v3": -34.730, "v4": 20.662, "amplitude": 36.205, "phase_angle": 15.617, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.900, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 252.389, 168.732, 169.872 ], "x_axis": [ -0.068, 0.954, -0.292 ], "y_axis": [ -0.967, -0.135, -0.216 ], "z_axis": [ -0.245, 0.267, 0.932 ], "quaternion": [ 0.657, -0.184, 0.018, 0.731 ] } }, { "index": 400, "index_chain": 400, "chain_name": "2", "nt_resnum": 476, "nt_name": "A", "nt_code": "A", "nt_id": "///2/476", "linked_nts": [ "///2/475", "///2/477" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": 156.500, "beta": -177.449, "gamma": 165.896, "delta": 80.909, "epsilon": -132.934, "zeta": -64.393, "epsilon_zeta": -68.541, "bb_type": "BI", "chi": -170.882, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.538, 1.172 ], "P_xyz": [ 0.236, 10.299, -0.067 ], "form": ".", "ssZp": 4.656, "Dp": 4.747, "splay_angle": 32.278, "splay_distance": 5.036, "splay_ratio": 0.280, "d22": null, "d64": null, "eta": 140.251, "theta": -151.087, "eta_prime": 161.033, "theta_prime": -143.909, "eta_base": -154.031, "theta_base": -98.869, "v0": 4.460, "v1": -26.309, "v2": 36.983, "v3": -35.427, "v4": 19.537, "amplitude": 37.809, "phase_angle": 12.001, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.538, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 252.960, 171.724, 172.063 ], "x_axis": [ -0.438, 0.497, -0.749 ], "y_axis": [ -0.833, -0.538, 0.130 ], "z_axis": [ -0.339, 0.681, 0.650 ], "quaternion": [ 0.410, -0.336, 0.250, 0.810 ] } }, { "index": 401, "index_chain": 401, "chain_name": "2", "nt_resnum": 477, "nt_name": "G", "nt_code": "G", "nt_id": "///2/477", "linked_nts": [ "///2/476", "///2/478" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,phosphate", "alpha": -60.661, "beta": 164.933, "gamma": 60.050, "delta": 78.958, "epsilon": -147.903, "zeta": -76.064, "epsilon_zeta": -71.839, "bb_type": "BI", "chi": -168.782, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.692, 1.014 ], "P_xyz": [ 1.059, 9.178, 1.008 ], "form": ".", "ssZp": 4.612, "Dp": 4.668, "splay_angle": 26.795, "splay_distance": 4.429, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 165.441, "theta": -148.954, "eta_prime": -168.333, "theta_prime": -149.665, "eta_base": -103.290, "theta_base": -140.697, "v0": 1.970, "v1": -24.930, "v2": 37.198, "v3": -37.072, "v4": 22.131, "amplitude": 38.650, "phase_angle": 15.757, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.796, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 250.104, 175.860, 171.751 ], "x_axis": [ -0.911, -0.116, -0.396 ], "y_axis": [ -0.198, -0.719, 0.666 ], "z_axis": [ -0.361, 0.685, 0.632 ], "quaternion": [ 0.023, -0.210, 0.374, 0.903 ] } }, { "index": 402, "index_chain": 402, "chain_name": "2", "nt_resnum": 478, "nt_name": "G", "nt_code": "G", "nt_id": "///2/478", "linked_nts": [ "///2/477", "///2/479" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.443, "beta": -176.005, "gamma": 45.011, "delta": 78.567, "epsilon": -154.976, "zeta": -75.101, "epsilon_zeta": -79.875, "bb_type": "BI", "chi": -161.704, "glyco_bond": "anti", "C5prime_xyz": [ -1.736, 8.840, 0.588 ], "P_xyz": [ 0.621, 9.712, 1.315 ], "form": "A", "ssZp": 4.431, "Dp": 4.559, "splay_angle": 21.893, "splay_distance": 3.516, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 170.326, "theta": -156.700, "eta_prime": 177.365, "theta_prime": -153.365, "eta_base": -162.709, "theta_base": -123.841, "v0": -1.204, "v1": -22.203, "v2": 35.816, "v3": -37.518, "v4": 24.395, "amplitude": 38.203, "phase_angle": 20.363, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.827, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 249.411, 180.205, 172.256 ], "x_axis": [ -0.783, -0.559, -0.272 ], "y_axis": [ 0.175, -0.619, 0.766 ], "z_axis": [ -0.597, 0.552, 0.582 ], "quaternion": [ -0.213, -0.252, 0.381, 0.864 ] } }, { "index": 403, "index_chain": 403, "chain_name": "2", "nt_resnum": 479, "nt_name": "C", "nt_code": "C", "nt_id": "///2/479", "linked_nts": [ "///2/478", "///2/480" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -60.788, "beta": 167.289, "gamma": 57.498, "delta": 79.112, "epsilon": -136.593, "zeta": -78.585, "epsilon_zeta": -58.008, "bb_type": "BI", "chi": -161.380, "glyco_bond": "anti", "C5prime_xyz": [ -1.438, 8.829, 0.593 ], "P_xyz": [ 1.133, 9.333, 0.602 ], "form": "A", "ssZp": 4.411, "Dp": 4.672, "splay_angle": 28.891, "splay_distance": 4.526, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": 173.463, "theta": -141.596, "eta_prime": -175.977, "theta_prime": -139.340, "eta_base": -137.794, "theta_base": -100.350, "v0": 0.111, "v1": -23.000, "v2": 35.882, "v3": -36.804, "v4": 23.135, "amplitude": 37.825, "phase_angle": 18.443, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.916, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 246.734, 182.427, 172.765 ], "x_axis": [ -0.571, -0.804, 0.163 ], "y_axis": [ 0.511, -0.193, 0.838 ], "z_axis": [ -0.642, 0.562, 0.521 ], "quaternion": [ -0.435, -0.159, 0.463, 0.756 ] } }, { "index": 404, "index_chain": 404, "chain_name": "2", "nt_resnum": 480, "nt_name": "G", "nt_code": "G", "nt_id": "///2/480", "linked_nts": [ "///2/479", "///2/481" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -59.315, "beta": 161.884, "gamma": 54.703, "delta": 83.072, "epsilon": -142.627, "zeta": -63.513, "epsilon_zeta": -79.113, "bb_type": "BI", "chi": 178.282, "glyco_bond": "anti", "C5prime_xyz": [ -1.594, 8.462, 1.760 ], "P_xyz": [ 0.912, 8.622, 2.514 ], "form": ".", "ssZp": 4.508, "Dp": 4.569, "splay_angle": 23.705, "splay_distance": 3.659, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 165.980, "theta": -127.757, "eta_prime": -177.266, "theta_prime": -126.855, "eta_base": -121.716, "theta_base": -76.217, "v0": 0.352, "v1": -21.609, "v2": 33.363, "v3": -34.091, "v4": 21.307, "amplitude": 35.087, "phase_angle": 18.038, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.848, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 242.918, 182.789, 175.171 ], "x_axis": [ 0.232, -0.906, 0.353 ], "y_axis": [ 0.851, 0.365, 0.378 ], "z_axis": [ -0.471, 0.213, 0.856 ], "quaternion": [ 0.783, 0.053, -0.263, -0.561 ] } }, { "index": 405, "index_chain": 405, "chain_name": "2", "nt_resnum": 481, "nt_name": "C", "nt_code": "C", "nt_id": "///2/481", "linked_nts": [ "///2/480", "///2/482" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,multiplet,internal-loop,junction-loop", "alpha": -72.022, "beta": -177.291, "gamma": 47.652, "delta": 84.898, "epsilon": -121.548, "zeta": -98.962, "epsilon_zeta": -22.586, "bb_type": "--", "chi": -157.200, "glyco_bond": "anti", "C5prime_xyz": [ -1.018, 8.698, 0.424 ], "P_xyz": [ 1.525, 8.845, 1.071 ], "form": ".", "ssZp": 4.142, "Dp": 4.686, "splay_angle": 20.233, "splay_distance": 3.267, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 167.111, "theta": -144.995, "eta_prime": -175.876, "theta_prime": -140.258, "eta_base": -109.216, "theta_base": -107.929, "v0": 4.452, "v1": -24.506, "v2": 34.169, "v3": -32.533, "v4": 17.760, "amplitude": 34.866, "phase_angle": 11.469, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.854, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 241.850, 181.444, 178.402 ], "x_axis": [ 0.843, -0.239, 0.482 ], "y_axis": [ 0.281, 0.959, -0.016 ], "z_axis": [ -0.458, 0.149, 0.876 ], "quaternion": [ 0.959, -0.043, -0.245, -0.136 ] } }, { "index": 406, "index_chain": 406, "chain_name": "2", "nt_resnum": 482, "nt_name": "G", "nt_code": "G", "nt_id": "///2/482", "linked_nts": [ "///2/481", "///2/483" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,junction-loop,cap-acceptor", "alpha": -53.687, "beta": 135.176, "gamma": 59.561, "delta": 81.412, "epsilon": -105.607, "zeta": -107.087, "epsilon_zeta": 1.480, "bb_type": "--", "chi": -160.820, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.744, 0.548 ], "P_xyz": [ 1.140, 8.691, -0.283 ], "form": ".", "ssZp": 4.161, "Dp": 4.759, "splay_angle": 81.805, "splay_distance": 12.215, "splay_ratio": 0.655, "d22": null, "d64": null, "eta": 169.076, "theta": -119.183, "eta_prime": -177.459, "theta_prime": -164.670, "eta_base": -136.249, "theta_base": 134.393, "v0": 3.005, "v1": -24.977, "v2": 36.264, "v3": -35.522, "v4": 20.520, "amplitude": 37.393, "phase_angle": 14.112, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.935, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 241.055, 181.761, 181.555 ], "x_axis": [ 0.908, 0.259, 0.328 ], "y_axis": [ -0.236, 0.966, -0.110 ], "z_axis": [ -0.346, 0.023, 0.938 ], "quaternion": [ 0.976, -0.034, -0.173, 0.127 ] } }, { "index": 407, "index_chain": 407, "chain_name": "2", "nt_resnum": 483, "nt_name": "C", "nt_code": "C", "nt_id": "///2/483", "linked_nts": [ "///2/482", "///2/484" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": 66.288, "beta": -148.647, "gamma": 128.862, "delta": 82.993, "epsilon": -125.343, "zeta": -78.895, "epsilon_zeta": -46.448, "bb_type": "--", "chi": -168.790, "glyco_bond": "anti", "C5prime_xyz": [ -1.437, 8.724, 1.042 ], "P_xyz": [ 1.060, 9.171, 0.393 ], "form": ".", "ssZp": 4.418, "Dp": 4.591, "splay_angle": 32.606, "splay_distance": 5.115, "splay_ratio": 0.281, "d22": null, "d64": null, "eta": 29.807, "theta": -130.529, "eta_prime": 47.027, "theta_prime": -129.307, "eta_base": 25.963, "theta_base": -85.752, "v0": -0.530, "v1": -20.617, "v2": 32.673, "v3": -33.918, "v4": 21.747, "amplitude": 34.658, "phase_angle": 19.484, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 228.939, 183.267, 181.184 ], "x_axis": [ -0.082, 0.624, -0.777 ], "y_axis": [ 0.706, 0.586, 0.397 ], "z_axis": [ 0.703, -0.516, -0.489 ], "quaternion": [ 0.504, 0.453, 0.734, -0.041 ] } }, { "index": 408, "index_chain": 408, "chain_name": "2", "nt_resnum": 484, "nt_name": "A", "nt_code": "A", "nt_id": "///2/484", "linked_nts": [ "///2/483", "///2/485" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BII,non-pair-contact,junction-loop,cap-donor,phosphate", "alpha": -51.784, "beta": 158.867, "gamma": 52.247, "delta": 83.116, "epsilon": -89.919, "zeta": -157.921, "epsilon_zeta": 68.002, "bb_type": "BII", "chi": -153.195, "glyco_bond": "anti", "C5prime_xyz": [ -1.202, 8.692, 0.124 ], "P_xyz": [ 1.401, 8.788, -0.181 ], "form": ".", "ssZp": 3.588, "Dp": 4.690, "splay_angle": 40.616, "splay_distance": 6.402, "splay_ratio": 0.356, "d22": null, "d64": null, "eta": -178.496, "theta": 174.797, "eta_prime": -159.978, "theta_prime": -172.630, "eta_base": -104.280, "theta_base": -167.897, "v0": 3.733, "v1": -24.752, "v2": 35.183, "v3": -34.026, "v4": 19.132, "amplitude": 36.085, "phase_angle": 12.836, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.596, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 232.340, 183.624, 177.381 ], "x_axis": [ 0.508, 0.851, -0.132 ], "y_axis": [ 0.528, -0.187, 0.828 ], "z_axis": [ 0.680, -0.490, -0.545 ], "quaternion": [ 0.440, 0.748, 0.461, 0.183 ] } }, { "index": 409, "index_chain": 409, "chain_name": "2", "nt_resnum": 485, "nt_name": "A", "nt_code": "A", "nt_id": "///2/485", "linked_nts": [ "///2/484", "///2/486" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BII,non-canonical,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -64.391, "beta": 123.219, "gamma": 57.184, "delta": 82.611, "epsilon": -121.328, "zeta": 178.780, "epsilon_zeta": 59.893, "bb_type": "BII", "chi": -139.674, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.659, -0.692 ], "P_xyz": [ 0.914, 7.994, -1.874 ], "form": ".", "ssZp": 3.323, "Dp": 4.735, "splay_angle": 89.516, "splay_distance": 13.287, "splay_ratio": 0.704, "d22": null, "d64": null, "eta": 177.155, "theta": 130.479, "eta_prime": 176.270, "theta_prime": 145.971, "eta_base": 173.014, "theta_base": 146.478, "v0": 3.146, "v1": -24.493, "v2": 35.322, "v3": -34.486, "v4": 19.791, "amplitude": 36.366, "phase_angle": 13.768, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.010, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 234.750, 177.971, 175.585 ], "x_axis": [ 0.464, 0.872, -0.156 ], "y_axis": [ 0.560, -0.153, 0.814 ], "z_axis": [ 0.686, -0.466, -0.559 ], "quaternion": [ 0.434, 0.738, 0.485, 0.180 ] } }, { "index": 410, "index_chain": 410, "chain_name": "2", "nt_resnum": 486, "nt_name": "A", "nt_code": "A", "nt_id": "///2/486", "linked_nts": [ "///2/485", "///2/487" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -63.690, "beta": 161.670, "gamma": 56.435, "delta": 146.137, "epsilon": -135.666, "zeta": -100.068, "epsilon_zeta": -35.598, "bb_type": "--", "chi": -123.643, "glyco_bond": "anti", "C5prime_xyz": [ -1.946, 8.584, -1.026 ], "P_xyz": [ 0.573, 9.159, -0.560 ], "form": ".", "ssZp": 1.650, "Dp": 1.665, "splay_angle": 45.678, "splay_distance": 7.452, "splay_ratio": 0.389, "d22": null, "d64": null, "eta": -156.131, "theta": -70.717, "eta_prime": -155.525, "theta_prime": -128.883, "eta_base": 177.575, "theta_base": -165.323, "v0": -21.600, "v1": 35.567, "v2": -35.199, "v3": 23.657, "v4": -1.503, "amplitude": 36.703, "phase_angle": 163.540, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.741, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 238.707, 165.469, 177.732 ], "x_axis": [ -0.433, 0.524, -0.733 ], "y_axis": [ 0.354, 0.847, 0.397 ], "z_axis": [ 0.829, -0.087, -0.553 ], "quaternion": [ 0.464, 0.261, 0.842, 0.092 ] } }, { "index": 411, "index_chain": 411, "chain_name": "2", "nt_resnum": 487, "nt_name": "U", "nt_code": "U", "nt_id": "///2/487", "linked_nts": [ "///2/486", "///2/488" ], "nt_type": "RNA", "dbn": "(", "summary": "~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,splayed-apart", "alpha": 125.341, "beta": 146.883, "gamma": 163.322, "delta": 146.911, "epsilon": -97.721, "zeta": -85.925, "epsilon_zeta": -11.796, "bb_type": "--", "chi": -87.010, "glyco_bond": "--", "C5prime_xyz": [ -2.708, 7.572, -2.589 ], "P_xyz": [ -2.458, 7.328, -5.193 ], "form": ".", "ssZp": 0.568, "Dp": 0.860, "splay_angle": 122.919, "splay_distance": 18.728, "splay_ratio": 0.879, "d22": 11.997, "d64": 15.359, "eta": 133.589, "theta": -130.942, "eta_prime": 153.394, "theta_prime": -127.513, "eta_base": 138.202, "theta_base": -131.621, "v0": -21.938, "v1": 36.039, "v2": -35.598, "v3": 23.844, "v4": -1.406, "amplitude": 37.152, "phase_angle": 163.368, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 244.172, 160.763, 179.609 ], "x_axis": [ -0.693, 0.193, -0.695 ], "y_axis": [ 0.368, 0.923, -0.111 ], "z_axis": [ 0.620, -0.333, -0.711 ], "quaternion": [ 0.360, 0.154, 0.912, -0.122 ] } }, { "index": 412, "index_chain": 412, "chain_name": "2", "nt_resnum": 488, "nt_name": "U", "nt_code": "U", "nt_id": "///2/488", "linked_nts": [ "///2/487", "///2/489" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-canonical,multiplet,bulge,splayed-apart", "alpha": -61.031, "beta": 141.518, "gamma": -178.219, "delta": 80.892, "epsilon": -154.052, "zeta": 99.561, "epsilon_zeta": 106.387, "bb_type": "--", "chi": -146.323, "glyco_bond": "anti", "C5prime_xyz": [ -1.607, 8.794, -0.319 ], "P_xyz": [ -1.802, 10.764, -2.037 ], "form": ".", "ssZp": 3.982, "Dp": 4.553, "splay_angle": 169.333, "splay_distance": 18.691, "splay_ratio": 0.996, "d22": null, "d64": null, "eta": -76.871, "theta": -17.021, "eta_prime": -49.706, "theta_prime": -1.312, "eta_base": -21.573, "theta_base": 94.482, "v0": -0.588, "v1": -21.690, "v2": 34.443, "v3": -35.741, "v4": 22.922, "amplitude": 36.541, "phase_angle": 19.511, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "2h", "suiteness": 0.409, "filter_rmsd": 0.103, "frame": { "rmsd": 0.002, "origin": [ 259.279, 170.894, 175.155 ], "x_axis": [ 0.827, -0.262, 0.498 ], "y_axis": [ -0.553, -0.539, 0.635 ], "z_axis": [ 0.102, -0.801, -0.590 ], "quaternion": [ 0.418, 0.860, -0.237, 0.174 ] } }, { "index": 413, "index_chain": 413, "chain_name": "2", "nt_resnum": 489, "nt_name": "A", "nt_code": "A", "nt_id": "///2/489", "linked_nts": [ "///2/488", "///2/490" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": 175.720, "beta": -159.545, "gamma": 151.430, "delta": 82.459, "epsilon": -114.226, "zeta": -92.766, "epsilon_zeta": -21.460, "bb_type": "--", "chi": 162.761, "glyco_bond": "anti", "C5prime_xyz": [ -1.736, 7.898, 2.514 ], "P_xyz": [ 0.579, 9.121, 2.486 ], "form": "A", "ssZp": 4.577, "Dp": 4.699, "splay_angle": 24.955, "splay_distance": 3.836, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": -158.751, "theta": -150.815, "eta_prime": -143.675, "theta_prime": -147.186, "eta_base": 147.817, "theta_base": -121.642, "v0": 2.786, "v1": -23.845, "v2": 34.652, "v3": -34.025, "v4": 19.707, "amplitude": 35.753, "phase_angle": 14.258, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.013, "origin": [ 245.834, 158.065, 177.155 ], "x_axis": [ -0.500, 0.659, -0.562 ], "y_axis": [ 0.693, 0.694, 0.197 ], "z_axis": [ 0.520, -0.290, -0.803 ], "quaternion": [ 0.312, 0.390, 0.866, -0.027 ] } }, { "index": 414, "index_chain": 414, "chain_name": "2", "nt_resnum": 490, "nt_name": "C", "nt_code": "C", "nt_id": "///2/490", "linked_nts": [ "///2/489", "///2/491" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -66.267, "beta": 170.263, "gamma": 50.629, "delta": 82.972, "epsilon": -148.445, "zeta": -70.394, "epsilon_zeta": -78.052, "bb_type": "BI", "chi": -165.930, "glyco_bond": "anti", "C5prime_xyz": [ -1.237, 8.666, 0.902 ], "P_xyz": [ 1.344, 8.862, 1.334 ], "form": "A", "ssZp": 4.510, "Dp": 4.611, "splay_angle": 21.738, "splay_distance": 3.517, "splay_ratio": 0.192, "d22": 4.416, "d64": 4.397, "eta": 160.178, "theta": -140.539, "eta_prime": 173.273, "theta_prime": -140.415, "eta_base": -149.598, "theta_base": -119.134, "v0": 3.375, "v1": -24.443, "v2": 35.058, "v3": -34.096, "v4": 19.362, "amplitude": 36.034, "phase_angle": 13.368, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.319, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 246.049, 155.840, 174.039 ], "x_axis": [ 0.004, 0.973, -0.232 ], "y_axis": [ 0.859, 0.116, 0.498 ], "z_axis": [ 0.512, -0.202, -0.835 ], "quaternion": [ 0.267, 0.656, 0.698, 0.106 ] } }, { "index": 415, "index_chain": 415, "chain_name": "2", "nt_resnum": 491, "nt_name": "C", "nt_code": "C", "nt_id": "///2/491", "linked_nts": [ "///2/490", "///2/492" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,cap-donor,phosphate", "alpha": -66.621, "beta": 178.002, "gamma": 51.423, "delta": 80.053, "epsilon": -146.373, "zeta": -69.664, "epsilon_zeta": -76.708, "bb_type": "BI", "chi": -157.181, "glyco_bond": "anti", "C5prime_xyz": [ -1.398, 8.834, 0.342 ], "P_xyz": [ 1.146, 9.406, 0.611 ], "form": ".", "ssZp": 4.326, "Dp": 4.623, "splay_angle": 27.749, "splay_distance": 4.810, "splay_ratio": 0.247, "d22": 6.080, "d64": 6.875, "eta": 167.043, "theta": -157.884, "eta_prime": 179.703, "theta_prime": -158.235, "eta_base": -144.604, "theta_base": -169.240, "v0": 0.612, "v1": -23.119, "v2": 35.566, "v3": -36.217, "v4": 22.439, "amplitude": 37.332, "phase_angle": 17.696, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.982, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 246.234, 155.730, 170.529 ], "x_axis": [ 0.400, 0.902, 0.162 ], "y_axis": [ 0.781, -0.428, 0.456 ], "z_axis": [ 0.480, -0.056, -0.875 ], "quaternion": [ 0.156, 0.822, 0.512, 0.195 ] } }, { "index": 416, "index_chain": 416, "chain_name": "2", "nt_resnum": 492, "nt_name": "C", "nt_code": "C", "nt_id": "///2/492", "linked_nts": [ "///2/491", "///2/493" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,phosphate", "alpha": -98.874, "beta": 116.092, "gamma": 159.379, "delta": 147.747, "epsilon": -99.749, "zeta": 150.187, "epsilon_zeta": 110.064, "bb_type": "BII", "chi": -142.876, "glyco_bond": "anti", "C5prime_xyz": [ -1.768, 8.767, 0.028 ], "P_xyz": [ -0.632, 10.134, -1.904 ], "form": ".", "ssZp": 0.853, "Dp": 0.886, "splay_angle": 50.453, "splay_distance": 8.139, "splay_ratio": 0.430, "d22": null, "d64": null, "eta": -93.668, "theta": 87.225, "eta_prime": -111.926, "theta_prime": 103.094, "eta_base": -132.525, "theta_base": 90.631, "v0": -21.610, "v1": 36.151, "v2": -36.019, "v3": 24.504, "v4": -2.019, "amplitude": 37.422, "phase_angle": 164.263, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 244.760, 154.643, 166.081 ], "x_axis": [ 0.461, 0.885, -0.069 ], "y_axis": [ 0.879, -0.444, 0.174 ], "z_axis": [ 0.123, -0.141, -0.982 ], "quaternion": [ 0.093, 0.850, 0.519, 0.016 ] } }, { "index": 417, "index_chain": 417, "chain_name": "2", "nt_resnum": 493, "nt_name": "A", "nt_code": "A", "nt_id": "///2/493", "linked_nts": [ "///2/492", "///2/494" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge,A-minor", "alpha": 159.222, "beta": -162.302, "gamma": 67.648, "delta": 83.558, "epsilon": -146.866, "zeta": -71.697, "epsilon_zeta": -75.169, "bb_type": "BI", "chi": -171.520, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.503, 1.222 ], "P_xyz": [ 1.213, 8.583, 1.894 ], "form": "A", "ssZp": 4.613, "Dp": 4.647, "splay_angle": 28.123, "splay_distance": 4.368, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": 114.638, "theta": -139.370, "eta_prime": 103.303, "theta_prime": -136.430, "eta_base": 102.308, "theta_base": -110.343, "v0": 4.406, "v1": -25.374, "v2": 35.528, "v3": -33.968, "v4": 18.656, "amplitude": 36.295, "phase_angle": 11.801, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 243.450, 149.821, 172.506 ], "x_axis": [ 0.576, 0.781, -0.242 ], "y_axis": [ 0.670, -0.621, -0.408 ], "z_axis": [ -0.469, 0.073, -0.880 ], "quaternion": [ -0.137, 0.877, 0.413, -0.203 ] } }, { "index": 418, "index_chain": 418, "chain_name": "2", "nt_resnum": 494, "nt_name": "C", "nt_code": "C", "nt_id": "///2/494", "linked_nts": [ "///2/493", "///2/495" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,bulge", "alpha": -68.472, "beta": -176.385, "gamma": 55.076, "delta": 83.149, "epsilon": -141.691, "zeta": -64.404, "epsilon_zeta": -77.287, "bb_type": "BI", "chi": -161.803, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.725, 0.651 ], "P_xyz": [ 1.322, 9.032, 1.145 ], "form": "A", "ssZp": 4.429, "Dp": 4.641, "splay_angle": 27.492, "splay_distance": 4.411, "splay_ratio": 0.238, "d22": 4.040, "d64": 3.549, "eta": 174.265, "theta": -129.074, "eta_prime": -173.862, "theta_prime": -126.069, "eta_base": -136.091, "theta_base": -97.409, "v0": 2.792, "v1": -23.779, "v2": 34.537, "v3": -33.897, "v4": 19.618, "amplitude": 35.629, "phase_angle": 14.225, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.941, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 241.195, 151.916, 169.408 ], "x_axis": [ 0.917, 0.232, -0.326 ], "y_axis": [ 0.193, -0.970, -0.146 ], "z_axis": [ -0.350, 0.071, -0.934 ], "quaternion": [ -0.056, 0.977, 0.109, -0.173 ] } }, { "index": 419, "index_chain": 419, "chain_name": "2", "nt_resnum": 495, "nt_name": "U", "nt_code": "U", "nt_id": "///2/495", "linked_nts": [ "///2/494", "///2/496" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,bulge,phosphate", "alpha": -82.575, "beta": -161.398, "gamma": 48.262, "delta": 86.460, "epsilon": -126.938, "zeta": -112.188, "epsilon_zeta": -14.750, "bb_type": "--", "chi": -153.960, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.755, 0.219 ], "P_xyz": [ 0.981, 9.301, 1.259 ], "form": ".", "ssZp": 3.947, "Dp": 4.515, "splay_angle": 29.667, "splay_distance": 4.969, "splay_ratio": 0.256, "d22": 4.518, "d64": 4.911, "eta": 167.400, "theta": -121.018, "eta_prime": 179.724, "theta_prime": -120.802, "eta_base": -142.967, "theta_base": -88.767, "v0": 0.319, "v1": -19.850, "v2": 30.690, "v3": -31.404, "v4": 19.633, "amplitude": 32.287, "phase_angle": 18.098, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.555, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 241.789, 153.240, 165.242 ], "x_axis": [ 0.843, -0.435, 0.317 ], "y_axis": [ -0.481, -0.873, 0.082 ], "z_axis": [ 0.241, -0.221, -0.945 ], "quaternion": [ 0.079, 0.957, -0.239, 0.146 ] } }, { "index": 420, "index_chain": 420, "chain_name": "2", "nt_resnum": 496, "nt_name": "C", "nt_code": "C", "nt_id": "///2/496", "linked_nts": [ "///2/495", "///2/497" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": 120.908, "beta": -114.607, "gamma": -170.237, "delta": 82.699, "epsilon": -141.497, "zeta": -83.571, "epsilon_zeta": -57.927, "bb_type": "BI", "chi": -170.527, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.624, 1.174 ], "P_xyz": [ 0.096, 9.741, -0.779 ], "form": "A", "ssZp": 4.553, "Dp": 4.627, "splay_angle": 23.284, "splay_distance": 3.671, "splay_ratio": 0.202, "d22": 4.586, "d64": 4.528, "eta": 167.567, "theta": -169.984, "eta_prime": -168.605, "theta_prime": -170.594, "eta_base": -119.778, "theta_base": -148.128, "v0": 2.394, "v1": -23.582, "v2": 34.673, "v3": -34.254, "v4": 20.123, "amplitude": 35.880, "phase_angle": 14.903, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 244.838, 151.019, 162.007 ], "x_axis": [ 0.410, -0.857, 0.311 ], "y_axis": [ -0.867, -0.472, -0.159 ], "z_axis": [ 0.283, -0.205, -0.937 ], "quaternion": [ 0.014, 0.840, -0.514, 0.177 ] } }, { "index": 421, "index_chain": 421, "chain_name": "2", "nt_resnum": 497, "nt_name": "C", "nt_code": "C", "nt_id": "///2/497", "linked_nts": [ "///2/496", "///2/498" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -49.170, "beta": 167.835, "gamma": 41.806, "delta": 80.738, "epsilon": -137.950, "zeta": -86.500, "epsilon_zeta": -51.450, "bb_type": "BI", "chi": -160.417, "glyco_bond": "anti", "C5prime_xyz": [ -1.246, 8.752, 0.565 ], "P_xyz": [ 1.320, 9.074, 0.969 ], "form": "A", "ssZp": 4.405, "Dp": 4.691, "splay_angle": 25.250, "splay_distance": 4.037, "splay_ratio": 0.219, "d22": 4.330, "d64": 4.237, "eta": 170.691, "theta": -149.224, "eta_prime": -178.791, "theta_prime": -146.232, "eta_base": -145.757, "theta_base": -128.277, "v0": 2.524, "v1": -24.541, "v2": 36.060, "v3": -35.613, "v4": 20.859, "amplitude": 37.304, "phase_angle": 14.841, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.599, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 247.188, 150.901, 159.189 ], "x_axis": [ -0.113, -0.964, 0.242 ], "y_axis": [ -0.943, 0.028, -0.331 ], "z_axis": [ 0.312, -0.266, -0.912 ], "quaternion": [ 0.024, -0.665, 0.716, -0.208 ] } }, { "index": 422, "index_chain": 422, "chain_name": "2", "nt_resnum": 498, "nt_name": "C", "nt_code": "C", "nt_id": "///2/498", "linked_nts": [ "///2/497", "///2/499" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": -54.172, "beta": 169.801, "gamma": 42.710, "delta": 80.779, "epsilon": -152.609, "zeta": -78.554, "epsilon_zeta": -74.055, "bb_type": "BI", "chi": -165.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.756, 0.824 ], "P_xyz": [ 1.124, 9.172, 1.479 ], "form": "A", "ssZp": 4.465, "Dp": 4.565, "splay_angle": 21.993, "splay_distance": 3.421, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 165.525, "theta": -153.617, "eta_prime": 174.651, "theta_prime": -151.449, "eta_base": -157.203, "theta_base": -124.951, "v0": 0.873, "v1": -23.060, "v2": 35.224, "v3": -35.720, "v4": 21.971, "amplitude": 36.892, "phase_angle": 17.296, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.648, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 249.623, 149.513, 156.284 ], "x_axis": [ -0.623, -0.634, 0.458 ], "y_axis": [ -0.782, 0.489, -0.386 ], "z_axis": [ 0.021, -0.599, -0.800 ], "quaternion": [ -0.128, -0.415, 0.853, -0.289 ] } }, { "index": 423, "index_chain": 423, "chain_name": "2", "nt_resnum": 499, "nt_name": "G", "nt_code": "G", "nt_id": "///2/499", "linked_nts": [ "///2/498", "///2/500" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -59.757, "beta": 170.225, "gamma": 50.055, "delta": 82.361, "epsilon": -111.981, "zeta": -113.329, "epsilon_zeta": 1.348, "bb_type": "--", "chi": -162.921, "glyco_bond": "anti", "C5prime_xyz": [ -1.150, 8.672, 0.714 ], "P_xyz": [ 1.454, 8.855, 0.963 ], "form": ".", "ssZp": 4.322, "Dp": 4.773, "splay_angle": 94.218, "splay_distance": 13.328, "splay_ratio": 0.733, "d22": null, "d64": null, "eta": 177.634, "theta": -129.556, "eta_prime": -175.165, "theta_prime": -161.615, "eta_base": -142.176, "theta_base": 141.613, "v0": 4.432, "v1": -25.655, "v2": 35.980, "v3": -34.423, "v4": 18.928, "amplitude": 36.765, "phase_angle": 11.864, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.926, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 250.565, 146.876, 154.319 ], "x_axis": [ -0.943, -0.256, 0.213 ], "y_axis": [ -0.333, 0.724, -0.604 ], "z_axis": [ 0.001, -0.641, -0.768 ], "quaternion": [ -0.057, -0.159, 0.927, -0.336 ] } }, { "index": 424, "index_chain": 424, "chain_name": "2", "nt_resnum": 500, "nt_name": "A", "nt_code": "A", "nt_id": "///2/500", "linked_nts": [ "///2/499", "///2/501" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,turn,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": 63.647, "beta": -172.967, "gamma": -178.659, "delta": 145.263, "epsilon": -108.601, "zeta": -53.886, "epsilon_zeta": -54.715, "bb_type": "--", "chi": -75.758, "glyco_bond": "--", "C5prime_xyz": [ -2.932, 7.224, -2.859 ], "P_xyz": [ -2.590, 6.621, -5.388 ], "form": ".", "ssZp": 0.664, "Dp": 1.225, "splay_angle": 104.304, "splay_distance": 15.199, "splay_ratio": 0.791, "d22": null, "d64": null, "eta": 107.106, "theta": -96.936, "eta_prime": 108.290, "theta_prime": -84.441, "eta_base": 65.219, "theta_base": -38.929, "v0": -22.114, "v1": 35.483, "v2": -34.565, "v3": 22.673, "v4": -0.533, "amplitude": 36.326, "phase_angle": 162.085, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 259.017, 151.252, 144.989 ], "x_axis": [ 0.313, 0.509, 0.802 ], "y_axis": [ -0.651, -0.501, 0.571 ], "z_axis": [ 0.692, -0.700, 0.175 ], "quaternion": [ 0.497, 0.640, -0.055, 0.584 ] } }, { "index": 425, "index_chain": 425, "chain_name": "2", "nt_resnum": 501, "nt_name": "C", "nt_code": "C", "nt_id": "///2/501", "linked_nts": [ "///2/500", "///2/502" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -72.119, "beta": 163.719, "gamma": 66.350, "delta": 82.991, "epsilon": -159.279, "zeta": -79.480, "epsilon_zeta": -79.800, "bb_type": "BI", "chi": -177.107, "glyco_bond": "anti", "C5prime_xyz": [ -1.235, 8.442, 1.539 ], "P_xyz": [ 1.388, 8.560, 1.633 ], "form": ".", "ssZp": 4.551, "Dp": 4.576, "splay_angle": 120.116, "splay_distance": 16.520, "splay_ratio": 0.868, "d22": 12.128, "d64": 15.542, "eta": 149.172, "theta": -157.937, "eta_prime": -155.707, "theta_prime": 171.917, "eta_base": -130.625, "theta_base": 170.845, "v0": 5.103, "v1": -26.206, "v2": 36.152, "v3": -34.176, "v4": 18.347, "amplitude": 36.804, "phase_angle": 10.794, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.432, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 246.107, 146.791, 151.654 ], "x_axis": [ -0.364, 0.403, -0.840 ], "y_axis": [ 0.831, -0.268, -0.488 ], "z_axis": [ -0.421, -0.875, -0.237 ], "quaternion": [ -0.181, -0.534, -0.577, 0.590 ] } }, { "index": 426, "index_chain": 426, "chain_name": "2", "nt_resnum": 502, "nt_name": "C", "nt_code": "C", "nt_id": "///2/502", "linked_nts": [ "///2/501", "///2/503" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -60.502, "beta": -164.252, "gamma": -146.478, "delta": 146.716, "epsilon": -133.515, "zeta": -46.489, "epsilon_zeta": -87.025, "bb_type": "BI", "chi": -130.125, "glyco_bond": "anti", "C5prime_xyz": [ -1.802, 8.706, -0.682 ], "P_xyz": [ -0.623, 10.309, -2.401 ], "form": ".", "ssZp": 1.701, "Dp": 1.695, "splay_angle": 48.699, "splay_distance": 7.915, "splay_ratio": 0.413, "d22": 5.241, "d64": 4.437, "eta": 25.671, "theta": -108.142, "eta_prime": 15.310, "theta_prime": -97.742, "eta_base": -32.031, "theta_base": -60.254, "v0": -21.445, "v1": 35.498, "v2": -35.259, "v3": 23.732, "v4": -1.657, "amplitude": 36.720, "phase_angle": 163.787, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 250.671, 132.425, 158.416 ], "x_axis": [ 0.605, -0.613, -0.507 ], "y_axis": [ 0.205, 0.736, -0.645 ], "z_axis": [ 0.769, 0.287, 0.571 ], "quaternion": [ 0.853, -0.273, 0.374, -0.240 ] } }, { "index": 427, "index_chain": 427, "chain_name": "2", "nt_resnum": 503, "nt_name": "C", "nt_code": "C", "nt_id": "///2/503", "linked_nts": [ "///2/502", "///2/504" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -98.433, "beta": 175.332, "gamma": 56.276, "delta": 144.475, "epsilon": -93.177, "zeta": -81.012, "epsilon_zeta": -12.165, "bb_type": "--", "chi": -91.734, "glyco_bond": "anti", "C5prime_xyz": [ -2.598, 7.829, -2.474 ], "P_xyz": [ -0.212, 8.711, -3.125 ], "form": ".", "ssZp": 0.571, "Dp": 0.786, "splay_angle": 101.283, "splay_distance": 14.928, "splay_ratio": 0.774, "d22": null, "d64": null, "eta": 150.802, "theta": -59.554, "eta_prime": -150.304, "theta_prime": -78.683, "eta_base": -114.584, "theta_base": -37.023, "v0": -23.694, "v1": 36.739, "v2": -35.054, "v3": 22.296, "v4": 0.677, "amplitude": 37.254, "phase_angle": 160.213, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.066, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 256.644, 136.261, 154.914 ], "x_axis": [ -0.356, -0.049, -0.933 ], "y_axis": [ -0.483, 0.864, 0.139 ], "z_axis": [ 0.800, 0.501, -0.331 ], "quaternion": [ 0.543, -0.167, 0.799, 0.200 ] } }, { "index": 428, "index_chain": 428, "chain_name": "2", "nt_resnum": 504, "nt_name": "G", "nt_code": "G", "nt_id": "///2/504", "linked_nts": [ "///2/503", "///2/505" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": -79.632, "beta": 173.649, "gamma": 50.908, "delta": 82.476, "epsilon": -147.730, "zeta": -72.577, "epsilon_zeta": -75.153, "bb_type": "BI", "chi": -173.097, "glyco_bond": "anti", "C5prime_xyz": [ -1.335, 8.539, 1.309 ], "P_xyz": [ 1.203, 8.720, 1.950 ], "form": "A", "ssZp": 4.626, "Dp": 4.649, "splay_angle": 22.827, "splay_distance": 3.636, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 137.819, "theta": -142.591, "eta_prime": -177.853, "theta_prime": -141.109, "eta_base": -152.400, "theta_base": -118.258, "v0": 4.117, "v1": -25.397, "v2": 35.843, "v3": -34.462, "v4": 19.150, "amplitude": 36.688, "phase_angle": 12.323, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.772, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 249.776, 149.454, 156.195 ], "x_axis": [ -0.623, -0.779, 0.072 ], "y_axis": [ 0.743, -0.562, 0.363 ], "z_axis": [ -0.243, 0.280, 0.929 ], "quaternion": [ -0.431, -0.049, 0.182, 0.882 ] } }, { "index": 429, "index_chain": 429, "chain_name": "2", "nt_resnum": 505, "nt_name": "G", "nt_code": "G", "nt_id": "///2/505", "linked_nts": [ "///2/504", "///2/506" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.703, "beta": 175.791, "gamma": 52.229, "delta": 80.726, "epsilon": -147.599, "zeta": -77.945, "epsilon_zeta": -69.654, "bb_type": "BI", "chi": -163.039, "glyco_bond": "anti", "C5prime_xyz": [ -1.404, 8.763, 0.701 ], "P_xyz": [ 1.146, 9.238, 1.080 ], "form": "A", "ssZp": 4.480, "Dp": 4.630, "splay_angle": 26.412, "splay_distance": 4.176, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 170.146, "theta": -148.882, "eta_prime": -176.924, "theta_prime": -145.755, "eta_base": -139.637, "theta_base": -119.615, "v0": 1.651, "v1": -23.896, "v2": 35.793, "v3": -35.842, "v4": 21.566, "amplitude": 37.260, "phase_angle": 16.131, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.991, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 247.229, 150.858, 158.376 ], "x_axis": [ -0.115, -0.964, 0.238 ], "y_axis": [ 0.947, -0.034, 0.320 ], "z_axis": [ -0.300, 0.262, 0.917 ], "quaternion": [ 0.665, 0.022, -0.203, -0.719 ] } }, { "index": 430, "index_chain": 430, "chain_name": "2", "nt_resnum": 506, "nt_name": "G", "nt_code": "G", "nt_id": "///2/506", "linked_nts": [ "///2/505", "///2/507" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": -57.597, "beta": 166.094, "gamma": 58.109, "delta": 80.788, "epsilon": -100.357, "zeta": -151.424, "epsilon_zeta": 51.067, "bb_type": "--", "chi": -161.221, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.781, 0.589 ], "P_xyz": [ 1.161, 9.204, 0.500 ], "form": ".", "ssZp": 4.100, "Dp": 4.710, "splay_angle": 153.828, "splay_distance": 17.636, "splay_ratio": 0.974, "d22": null, "d64": null, "eta": -173.691, "theta": -163.409, "eta_prime": -164.546, "theta_prime": 170.859, "eta_base": -132.461, "theta_base": -110.938, "v0": 1.622, "v1": -23.978, "v2": 35.975, "v3": -36.029, "v4": 21.712, "amplitude": 37.460, "phase_angle": 16.187, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.898, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 244.735, 151.037, 161.721 ], "x_axis": [ 0.400, -0.839, 0.368 ], "y_axis": [ 0.862, 0.481, 0.159 ], "z_axis": [ -0.311, 0.254, 0.916 ], "quaternion": [ 0.836, -0.028, -0.203, -0.509 ] } }, { "index": 431, "index_chain": 431, "chain_name": "2", "nt_resnum": 507, "nt_name": "G", "nt_code": "G", "nt_id": "///2/507", "linked_nts": [ "///2/506", "///2/508" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-pair-contact,bulge,phosphate,splayed-apart", "alpha": 72.461, "beta": 178.051, "gamma": 72.094, "delta": 147.055, "epsilon": -154.455, "zeta": 84.910, "epsilon_zeta": 120.635, "bb_type": "--", "chi": -80.746, "glyco_bond": "--", "C5prime_xyz": [ -2.685, 7.419, -2.763 ], "P_xyz": [ -0.281, 7.695, -3.782 ], "form": ".", "ssZp": 1.539, "Dp": 1.938, "splay_angle": 106.383, "splay_distance": 16.662, "splay_ratio": 0.801, "d22": null, "d64": null, "eta": -33.148, "theta": 63.469, "eta_prime": 5.819, "theta_prime": 19.761, "eta_base": -86.889, "theta_base": 35.692, "v0": -20.370, "v1": 34.825, "v2": -35.189, "v3": 24.309, "v4": -2.682, "amplitude": 36.363, "phase_angle": 165.403, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.307, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 252.175, 162.747, 172.608 ], "x_axis": [ 0.919, 0.098, -0.381 ], "y_axis": [ -0.371, -0.112, -0.922 ], "z_axis": [ -0.133, 0.989, -0.067 ], "quaternion": [ 0.660, -0.724, 0.094, 0.177 ] } }, { "index": 432, "index_chain": 432, "chain_name": "2", "nt_resnum": 508, "nt_name": "A", "nt_code": "A", "nt_id": "///2/508", "linked_nts": [ "///2/507", "///2/509" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,cap-acceptor,phosphate,splayed-apart", "alpha": -81.256, "beta": -162.004, "gamma": -46.618, "delta": 83.839, "epsilon": -138.964, "zeta": -29.545, "epsilon_zeta": -109.419, "bb_type": "--", "chi": -174.005, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.430, 1.351 ], "P_xyz": [ -0.601, 10.270, 3.082 ], "form": ".", "ssZp": 4.698, "Dp": 4.721, "splay_angle": 53.830, "splay_distance": 7.972, "splay_ratio": 0.453, "d22": null, "d64": null, "eta": 101.317, "theta": -133.294, "eta_prime": 119.159, "theta_prime": -112.285, "eta_base": 129.625, "theta_base": -51.821, "v0": 5.668, "v1": -26.511, "v2": 36.113, "v3": -33.847, "v4": 17.815, "amplitude": 36.663, "phase_angle": 9.943, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "0k", "suiteness": 0.010, "filter_rmsd": 0.040, "frame": { "rmsd": 0.003, "origin": [ 242.100, 152.552, 164.111 ], "x_axis": [ 0.813, -0.335, 0.475 ], "y_axis": [ 0.388, 0.922, -0.014 ], "z_axis": [ -0.434, 0.195, 0.880 ], "quaternion": [ 0.951, -0.055, -0.239, -0.190 ] } }, { "index": 433, "index_chain": 433, "chain_name": "2", "nt_resnum": 509, "nt_name": "G", "nt_code": "G", "nt_id": "///2/509", "linked_nts": [ "///2/508", "///2/510" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,cap-donor", "alpha": -87.063, "beta": 173.020, "gamma": 72.350, "delta": 82.520, "epsilon": -145.877, "zeta": -76.190, "epsilon_zeta": -69.687, "bb_type": "BI", "chi": -164.540, "glyco_bond": "anti", "C5prime_xyz": [ -1.178, 8.647, 0.806 ], "P_xyz": [ 1.422, 8.874, 0.505 ], "form": "A", "ssZp": 4.550, "Dp": 4.683, "splay_angle": 24.203, "splay_distance": 3.803, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 159.578, "theta": -144.245, "eta_prime": -156.538, "theta_prime": -146.670, "eta_base": -76.084, "theta_base": -127.022, "v0": 5.210, "v1": -26.489, "v2": 36.565, "v3": -34.537, "v4": 18.503, "amplitude": 37.216, "phase_angle": 10.738, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.036, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 246.658, 155.449, 169.975 ], "x_axis": [ 0.388, 0.907, 0.164 ], "y_axis": [ -0.788, 0.419, -0.452 ], "z_axis": [ -0.478, 0.046, 0.877 ], "quaternion": [ 0.819, -0.152, -0.196, 0.517 ] } }, { "index": 434, "index_chain": 434, "chain_name": "2", "nt_resnum": 510, "nt_name": "G", "nt_code": "G", "nt_id": "///2/510", "linked_nts": [ "///2/509", "///2/511" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate", "alpha": -65.806, "beta": 170.162, "gamma": 55.007, "delta": 80.843, "epsilon": -148.894, "zeta": -68.817, "epsilon_zeta": -80.077, "bb_type": "BI", "chi": -174.458, "glyco_bond": "anti", "C5prime_xyz": [ -1.552, 8.590, 1.352 ], "P_xyz": [ 0.982, 8.981, 1.892 ], "form": "A", "ssZp": 4.606, "Dp": 4.624, "splay_angle": 24.083, "splay_distance": 3.808, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 165.476, "theta": -141.381, "eta_prime": 178.200, "theta_prime": -140.134, "eta_base": -144.138, "theta_base": -110.938, "v0": 1.864, "v1": -24.096, "v2": 35.888, "v3": -35.812, "v4": 21.414, "amplitude": 37.298, "phase_angle": 15.806, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.974, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 246.448, 155.573, 173.770 ], "x_axis": [ 0.077, 0.938, -0.338 ], "y_axis": [ -0.852, -0.114, -0.511 ], "z_axis": [ -0.517, 0.328, 0.791 ], "quaternion": [ 0.662, -0.317, -0.068, 0.676 ] } }, { "index": 435, "index_chain": 435, "chain_name": "2", "nt_resnum": 511, "nt_name": "U", "nt_code": "U", "nt_id": "///2/511", "linked_nts": [ "///2/510", "///2/512" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -67.827, "beta": -178.756, "gamma": 52.883, "delta": 80.580, "epsilon": -147.199, "zeta": -74.422, "epsilon_zeta": -72.778, "bb_type": "BI", "chi": -161.807, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.718, 0.629 ], "P_xyz": [ 1.171, 9.196, 1.048 ], "form": "A", "ssZp": 4.468, "Dp": 4.647, "splay_angle": 25.389, "splay_distance": 3.964, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 169.239, "theta": -146.961, "eta_prime": -177.517, "theta_prime": -144.698, "eta_base": -133.566, "theta_base": -114.383, "v0": 2.195, "v1": -24.399, "v2": 36.119, "v3": -35.840, "v4": 21.216, "amplitude": 37.451, "phase_angle": 15.324, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.969, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 246.247, 157.914, 176.767 ], "x_axis": [ -0.450, 0.663, -0.598 ], "y_axis": [ -0.740, -0.652, -0.166 ], "z_axis": [ -0.500, 0.368, 0.784 ], "quaternion": [ 0.413, -0.323, 0.059, 0.849 ] } }, { "index": 436, "index_chain": 436, "chain_name": "2", "nt_resnum": 512, "nt_name": "A", "nt_code": "A", "nt_id": "///2/512", "linked_nts": [ "///2/511", "///2/513" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop", "alpha": -65.331, "beta": 164.442, "gamma": 60.204, "delta": 80.044, "epsilon": -147.604, "zeta": -70.989, "epsilon_zeta": -76.615, "bb_type": "BI", "chi": -172.545, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.541, 1.240 ], "P_xyz": [ 1.093, 8.964, 1.305 ], "form": "A", "ssZp": 4.671, "Dp": 4.680, "splay_angle": 29.070, "splay_distance": 4.490, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": 166.119, "theta": -142.374, "eta_prime": -178.255, "theta_prime": -142.629, "eta_base": -131.704, "theta_base": -115.413, "v0": 3.310, "v1": -25.747, "v2": 37.149, "v3": -36.282, "v4": 20.789, "amplitude": 38.248, "phase_angle": 13.768, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 244.624, 160.710, 179.060 ], "x_axis": [ -0.714, 0.137, -0.687 ], "y_axis": [ -0.341, -0.924, 0.170 ], "z_axis": [ -0.611, 0.356, 0.707 ], "quaternion": [ 0.131, -0.355, 0.144, 0.915 ] } }, { "index": 437, "index_chain": 437, "chain_name": "2", "nt_resnum": 513, "nt_name": "G", "nt_code": "G", "nt_id": "///2/513", "linked_nts": [ "///2/512", "///2/514" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -66.108, "beta": 177.596, "gamma": 55.406, "delta": 80.478, "epsilon": -147.067, "zeta": -67.595, "epsilon_zeta": -79.472, "bb_type": "BI", "chi": 179.360, "glyco_bond": "anti", "C5prime_xyz": [ -1.587, 8.471, 1.686 ], "P_xyz": [ 0.861, 8.789, 2.567 ], "form": "A", "ssZp": 4.623, "Dp": 4.638, "splay_angle": 25.827, "splay_distance": 4.064, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 170.448, "theta": -140.270, "eta_prime": -176.549, "theta_prime": -137.169, "eta_base": -131.855, "theta_base": -108.004, "v0": 1.882, "v1": -24.169, "v2": 36.023, "v3": -35.907, "v4": 21.455, "amplitude": 37.432, "phase_angle": 15.771, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.986, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 241.797, 163.825, 180.631 ], "x_axis": [ -0.603, -0.509, -0.614 ], "y_axis": [ 0.283, -0.856, 0.432 ], "z_axis": [ -0.746, 0.087, 0.660 ], "quaternion": [ -0.224, -0.385, 0.147, 0.883 ] } }, { "index": 438, "index_chain": 438, "chain_name": "2", "nt_resnum": 514, "nt_name": "U", "nt_code": "U", "nt_id": "///2/514", "linked_nts": [ "///2/513", "///2/515" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -70.258, "beta": -171.107, "gamma": 50.115, "delta": 80.930, "epsilon": -128.226, "zeta": -62.005, "epsilon_zeta": -66.221, "bb_type": "BI", "chi": -162.213, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.693, 0.662 ], "P_xyz": [ 1.118, 9.166, 1.328 ], "form": ".", "ssZp": 4.423, "Dp": 4.737, "splay_angle": 32.748, "splay_distance": 5.212, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 173.143, "theta": -119.750, "eta_prime": -176.402, "theta_prime": -113.278, "eta_base": -136.826, "theta_base": -64.569, "v0": 2.830, "v1": -24.884, "v2": 36.275, "v3": -35.623, "v4": 20.681, "amplitude": 37.446, "phase_angle": 14.364, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.876, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 238.031, 165.157, 181.377 ], "x_axis": [ -0.262, -0.936, -0.234 ], "y_axis": [ 0.605, -0.348, 0.716 ], "z_axis": [ -0.752, 0.047, 0.657 ], "quaternion": [ 0.512, 0.327, -0.253, -0.753 ] } }, { "index": 439, "index_chain": 439, "chain_name": "2", "nt_resnum": 515, "nt_name": "G", "nt_code": "G", "nt_id": "///2/515", "linked_nts": [ "///2/514", "///2/516" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": -64.413, "beta": 174.667, "gamma": 52.372, "delta": 80.692, "epsilon": -112.031, "zeta": -135.571, "epsilon_zeta": 23.541, "bb_type": "--", "chi": -150.068, "glyco_bond": "anti", "C5prime_xyz": [ -1.393, 8.816, -0.083 ], "P_xyz": [ 1.179, 9.317, -0.192 ], "form": ".", "ssZp": 3.747, "Dp": 4.736, "splay_angle": 120.567, "splay_distance": 16.460, "splay_ratio": 0.869, "d22": null, "d64": null, "eta": 169.313, "theta": -164.954, "eta_prime": -168.829, "theta_prime": 172.174, "eta_base": -107.416, "theta_base": -148.332, "v0": 1.762, "v1": -23.966, "v2": 35.808, "v3": -35.783, "v4": 21.456, "amplitude": 37.243, "phase_angle": 15.957, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.742, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 235.641, 160.845, 183.066 ], "x_axis": [ 0.556, -0.775, 0.301 ], "y_axis": [ 0.371, 0.556, 0.744 ], "z_axis": [ -0.744, -0.302, 0.596 ], "quaternion": [ 0.823, 0.318, -0.318, -0.348 ] } }, { "index": 440, "index_chain": 440, "chain_name": "2", "nt_resnum": 516, "nt_name": "A", "nt_code": "A", "nt_id": "///2/516", "linked_nts": [ "///2/515", "///2/517" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart", "alpha": 56.576, "beta": -134.118, "gamma": 38.206, "delta": 143.368, "epsilon": -106.051, "zeta": 171.303, "epsilon_zeta": 82.646, "bb_type": "BII", "chi": -53.822, "glyco_bond": "--", "C5prime_xyz": [ -3.632, 6.155, -3.160 ], "P_xyz": [ -2.184, 7.855, -4.539 ], "form": ".", "ssZp": -0.003, "Dp": 1.169, "splay_angle": 112.668, "splay_distance": 16.362, "splay_ratio": 0.833, "d22": null, "d64": null, "eta": -25.075, "theta": 174.763, "eta_prime": -18.372, "theta_prime": 149.533, "eta_base": -73.124, "theta_base": 109.414, "v0": -22.099, "v1": 34.986, "v2": -33.915, "v3": 21.993, "v4": -0.134, "amplitude": 35.767, "phase_angle": 161.483, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.434, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 227.511, 165.190, 196.703 ], "x_axis": [ 0.328, 0.344, 0.880 ], "y_axis": [ 0.627, 0.618, -0.476 ], "z_axis": [ -0.707, 0.707, -0.013 ], "quaternion": [ 0.695, -0.425, -0.571, -0.101 ] } }, { "index": 441, "index_chain": 441, "chain_name": "2", "nt_resnum": 517, "nt_name": "C", "nt_code": "C", "nt_id": "///2/517", "linked_nts": [ "///2/516", "///2/518" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": 114.892, "beta": 159.964, "gamma": 41.600, "delta": 80.284, "epsilon": -134.474, "zeta": -64.850, "epsilon_zeta": -69.625, "bb_type": "BI", "chi": -164.818, "glyco_bond": "anti", "C5prime_xyz": [ -1.400, 8.765, 0.797 ], "P_xyz": [ 1.159, 9.106, 1.227 ], "form": ".", "ssZp": 4.481, "Dp": 4.678, "splay_angle": 32.852, "splay_distance": 5.165, "splay_ratio": 0.283, "d22": null, "d64": null, "eta": 16.156, "theta": -125.875, "eta_prime": 18.399, "theta_prime": -120.732, "eta_base": 63.383, "theta_base": -75.894, "v0": 1.001, "v1": -23.498, "v2": 35.768, "v3": -36.182, "v4": 22.190, "amplitude": 37.423, "phase_angle": 17.103, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4d", "suiteness": 0.024, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 228.145, 164.035, 180.394 ], "x_axis": [ 0.642, -0.691, 0.332 ], "y_axis": [ 0.353, 0.651, 0.672 ], "z_axis": [ -0.681, -0.314, 0.662 ], "quaternion": [ 0.859, 0.287, -0.295, -0.304 ] } }, { "index": 442, "index_chain": 442, "chain_name": "2", "nt_resnum": 518, "nt_name": "G", "nt_code": "G", "nt_id": "///2/518", "linked_nts": [ "///2/517", "///2/519" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.853, "beta": 158.070, "gamma": 65.552, "delta": 79.745, "epsilon": -150.466, "zeta": -74.828, "epsilon_zeta": -75.638, "bb_type": "BI", "chi": -167.940, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.681, 0.979 ], "P_xyz": [ 1.077, 9.122, 0.619 ], "form": "A", "ssZp": 4.597, "Dp": 4.653, "splay_angle": 27.434, "splay_distance": 4.306, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 162.599, "theta": -147.598, "eta_prime": -168.412, "theta_prime": -150.836, "eta_base": -98.725, "theta_base": -133.355, "v0": 3.035, "v1": -25.750, "v2": 37.528, "v3": -36.727, "v4": 21.258, "amplitude": 38.708, "phase_angle": 14.188, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.653, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 228.353, 160.964, 184.541 ], "x_axis": [ 0.683, 0.091, 0.725 ], "y_axis": [ -0.311, 0.934, 0.175 ], "z_axis": [ -0.661, -0.345, 0.666 ], "quaternion": [ 0.906, 0.144, -0.383, 0.111 ] } }, { "index": 443, "index_chain": 443, "chain_name": "2", "nt_resnum": 519, "nt_name": "A", "nt_code": "A", "nt_id": "///2/519", "linked_nts": [ "///2/518", "///2/520" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,phosphate", "alpha": -63.978, "beta": 177.830, "gamma": 51.642, "delta": 78.794, "epsilon": -150.189, "zeta": -74.884, "epsilon_zeta": -75.306, "bb_type": "BI", "chi": -176.525, "glyco_bond": "anti", "C5prime_xyz": [ -1.647, 8.514, 1.445 ], "P_xyz": [ 0.802, 9.012, 2.225 ], "form": "A", "ssZp": 4.663, "Dp": 4.654, "splay_angle": 24.621, "splay_distance": 3.919, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 169.038, "theta": -151.471, "eta_prime": 178.403, "theta_prime": -148.476, "eta_base": -147.883, "theta_base": -128.206, "v0": 1.652, "v1": -24.669, "v2": 37.037, "v3": -37.090, "v4": 22.310, "amplitude": 38.565, "phase_angle": 16.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.968, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 226.769, 157.837, 187.042 ], "x_axis": [ 0.610, 0.594, 0.524 ], "y_axis": [ -0.525, 0.799, -0.294 ], "z_axis": [ -0.593, -0.096, 0.799 ], "quaternion": [ 0.896, -0.055, -0.312, 0.312 ] } }, { "index": 444, "index_chain": 444, "chain_name": "2", "nt_resnum": 520, "nt_name": "A", "nt_code": "A", "nt_id": "///2/520", "linked_nts": [ "///2/519", "///2/521" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -61.959, "beta": 179.932, "gamma": 51.590, "delta": 79.805, "epsilon": -149.331, "zeta": -71.715, "epsilon_zeta": -77.616, "bb_type": "BI", "chi": -163.717, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.704, 0.723 ], "P_xyz": [ 1.068, 9.264, 1.163 ], "form": "A", "ssZp": 4.510, "Dp": 4.641, "splay_angle": 21.250, "splay_distance": 3.503, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 173.064, "theta": -147.585, "eta_prime": -177.729, "theta_prime": -146.120, "eta_base": -147.669, "theta_base": -127.900, "v0": 1.772, "v1": -24.546, "v2": 36.711, "v3": -36.695, "v4": 22.001, "amplitude": 38.189, "phase_angle": 15.991, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.957, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 226.419, 155.770, 190.354 ], "x_axis": [ 0.267, 0.916, 0.298 ], "y_axis": [ -0.789, 0.386, -0.478 ], "z_axis": [ -0.553, -0.108, 0.826 ], "quaternion": [ 0.787, -0.118, -0.270, 0.542 ] } }, { "index": 445, "index_chain": 445, "chain_name": "2", "nt_resnum": 521, "nt_name": "A", "nt_code": "A", "nt_id": "///2/521", "linked_nts": [ "///2/520", "///2/522" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,phosphate", "alpha": -72.395, "beta": 173.016, "gamma": 61.846, "delta": 78.784, "epsilon": -145.880, "zeta": -62.888, "epsilon_zeta": -82.992, "bb_type": "BI", "chi": -160.505, "glyco_bond": "anti", "C5prime_xyz": [ -1.715, 8.823, 0.498 ], "P_xyz": [ 0.785, 9.600, 0.494 ], "form": ".", "ssZp": 4.394, "Dp": 4.603, "splay_angle": 33.660, "splay_distance": 5.189, "splay_ratio": 0.290, "d22": null, "d64": null, "eta": 167.392, "theta": -136.019, "eta_prime": 179.453, "theta_prime": -131.736, "eta_base": -150.532, "theta_base": -82.145, "v0": -1.826, "v1": -21.582, "v2": 35.400, "v3": -37.429, "v4": 24.765, "amplitude": 37.991, "phase_angle": 21.282, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.844, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 226.491, 155.291, 193.823 ], "x_axis": [ -0.042, 0.995, -0.092 ], "y_axis": [ -0.891, -0.079, -0.446 ], "z_axis": [ -0.451, 0.064, 0.890 ], "quaternion": [ 0.665, -0.192, -0.135, 0.709 ] } }, { "index": 446, "index_chain": 446, "chain_name": "2", "nt_resnum": 522, "nt_name": "A", "nt_code": "A", "nt_id": "///2/522", "linked_nts": [ "///2/521", "///2/523" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -70.751, "beta": 164.962, "gamma": 68.791, "delta": 83.106, "epsilon": -173.936, "zeta": -93.462, "epsilon_zeta": -80.474, "bb_type": "BI", "chi": -159.447, "glyco_bond": "anti", "C5prime_xyz": [ -1.121, 8.622, 0.511 ], "P_xyz": [ 1.448, 8.770, -0.000 ], "form": ".", "ssZp": 4.368, "Dp": 4.456, "splay_angle": 58.851, "splay_distance": 9.519, "splay_ratio": 0.497, "d22": null, "d64": null, "eta": 164.845, "theta": -165.156, "eta_prime": -165.413, "theta_prime": -177.487, "eta_base": -93.368, "theta_base": 179.014, "v0": 5.511, "v1": -26.289, "v2": 35.949, "v3": -33.763, "v4": 17.864, "amplitude": 36.521, "phase_angle": 10.159, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.579, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 223.590, 158.880, 196.195 ], "x_axis": [ -0.784, 0.491, -0.380 ], "y_axis": [ -0.493, -0.864, -0.101 ], "z_axis": [ -0.378, 0.108, 0.919 ], "quaternion": [ 0.261, -0.201, 0.002, 0.944 ] } }, { "index": 447, "index_chain": 447, "chain_name": "2", "nt_resnum": 523, "nt_name": "A", "nt_code": "A", "nt_id": "///2/523", "linked_nts": [ "///2/522", "///2/524" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": 179.671, "beta": 169.627, "gamma": 178.696, "delta": 81.298, "epsilon": -117.951, "zeta": -62.410, "epsilon_zeta": -55.541, "bb_type": "--", "chi": 164.313, "glyco_bond": "anti", "C5prime_xyz": [ -1.499, 7.816, 2.466 ], "P_xyz": [ -0.211, 10.094, 2.581 ], "form": ".", "ssZp": 4.790, "Dp": 4.828, "splay_angle": 34.482, "splay_distance": 5.261, "splay_ratio": 0.303, "d22": null, "d64": null, "eta": -176.022, "theta": -146.392, "eta_prime": 170.978, "theta_prime": -135.970, "eta_base": 166.035, "theta_base": -81.339, "v0": 7.265, "v1": -28.695, "v2": 38.115, "v3": -34.924, "v4": 17.454, "amplitude": 38.487, "phase_angle": 7.967, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.253, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 227.830, 158.631, 204.714 ], "x_axis": [ -0.395, 0.749, -0.532 ], "y_axis": [ -0.488, -0.662, -0.569 ], "z_axis": [ -0.779, 0.035, 0.627 ], "quaternion": [ 0.378, -0.400, -0.163, 0.819 ] } }, { "index": 448, "index_chain": 448, "chain_name": "2", "nt_resnum": 524, "nt_name": "U", "nt_code": "U", "nt_id": "///2/524", "linked_nts": [ "///2/523", "///2/525" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -66.417, "beta": 178.832, "gamma": 52.505, "delta": 81.453, "epsilon": -152.444, "zeta": 67.637, "epsilon_zeta": 139.919, "bb_type": "--", "chi": -170.556, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.611, 1.144 ], "P_xyz": [ 1.028, 9.010, 1.849 ], "form": ".", "ssZp": 4.561, "Dp": 4.591, "splay_angle": 149.189, "splay_distance": 17.170, "splay_ratio": 0.964, "d22": null, "d64": null, "eta": 158.093, "theta": 23.611, "eta_prime": -174.861, "theta_prime": 25.746, "eta_base": -102.330, "theta_base": 39.641, "v0": 1.933, "v1": -23.796, "v2": 35.400, "v3": -35.271, "v4": 21.015, "amplitude": 36.766, "phase_angle": 15.667, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.496, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 223.482, 161.579, 204.981 ], "x_axis": [ -0.565, -0.216, -0.796 ], "y_axis": [ 0.166, -0.975, 0.147 ], "z_axis": [ -0.808, -0.049, 0.587 ], "quaternion": [ -0.108, -0.453, 0.028, 0.884 ] } }, { "index": 449, "index_chain": 449, "chain_name": "2", "nt_resnum": 525, "nt_name": "A", "nt_code": "A", "nt_id": "///2/525", "linked_nts": [ "///2/524", "///2/526" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": 139.748, "beta": -132.651, "gamma": 156.483, "delta": 83.690, "epsilon": -161.530, "zeta": -82.027, "epsilon_zeta": -79.502, "bb_type": "BI", "chi": -166.044, "glyco_bond": "anti", "C5prime_xyz": [ -1.299, 8.608, 0.919 ], "P_xyz": [ 0.771, 9.100, -0.606 ], "form": ".", "ssZp": 4.441, "Dp": 4.498, "splay_angle": 26.442, "splay_distance": 4.096, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 168.634, "theta": -164.392, "eta_prime": -150.187, "theta_prime": -174.786, "eta_base": -126.703, "theta_base": -174.251, "v0": 3.218, "v1": -23.770, "v2": 34.092, "v3": -33.235, "v4": 18.963, "amplitude": 35.062, "phase_angle": 13.511, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 225.176, 147.624, 214.840 ], "x_axis": [ 0.582, 0.530, 0.616 ], "y_axis": [ -0.358, 0.848, -0.391 ], "z_axis": [ -0.730, 0.007, 0.684 ], "quaternion": [ 0.882, -0.113, -0.381, 0.252 ] } }, { "index": 450, "index_chain": 450, "chain_name": "2", "nt_resnum": 526, "nt_name": "A", "nt_code": "A", "nt_id": "///2/526", "linked_nts": [ "///2/525", "///2/527" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate", "alpha": -68.965, "beta": 179.259, "gamma": 55.352, "delta": 84.295, "epsilon": -151.568, "zeta": -71.657, "epsilon_zeta": -79.912, "bb_type": "BI", "chi": -161.350, "glyco_bond": "anti", "C5prime_xyz": [ -1.287, 8.655, 0.644 ], "P_xyz": [ 1.290, 8.940, 1.059 ], "form": "A", "ssZp": 4.405, "Dp": 4.567, "splay_angle": 22.108, "splay_distance": 3.502, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 173.084, "theta": -143.035, "eta_prime": 177.957, "theta_prime": -142.460, "eta_base": -170.694, "theta_base": -113.837, "v0": 3.248, "v1": -23.707, "v2": 33.977, "v3": -33.053, "v4": 18.838, "amplitude": 34.930, "phase_angle": 13.413, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.814, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 222.687, 144.804, 216.462 ], "x_axis": [ 0.476, 0.773, 0.419 ], "y_axis": [ -0.569, 0.634, -0.524 ], "z_axis": [ -0.671, 0.011, 0.742 ], "quaternion": [ 0.844, -0.158, -0.323, 0.397 ] } }, { "index": 451, "index_chain": 451, "chain_name": "2", "nt_resnum": 527, "nt_name": "C", "nt_code": "C", "nt_id": "///2/527", "linked_nts": [ "///2/526", "///2/528" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -64.707, "beta": 171.141, "gamma": 54.452, "delta": 80.984, "epsilon": -142.185, "zeta": -81.538, "epsilon_zeta": -60.646, "bb_type": "BI", "chi": -157.109, "glyco_bond": "anti", "C5prime_xyz": [ -1.284, 8.785, 0.350 ], "P_xyz": [ 1.314, 9.146, 0.353 ], "form": "A", "ssZp": 4.325, "Dp": 4.669, "splay_angle": 29.595, "splay_distance": 4.689, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 168.615, "theta": -147.478, "eta_prime": -177.283, "theta_prime": -145.490, "eta_base": -134.170, "theta_base": -123.518, "v0": 2.321, "v1": -24.319, "v2": 35.876, "v3": -35.530, "v4": 20.945, "amplitude": 37.163, "phase_angle": 15.120, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.970, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 221.594, 144.880, 219.789 ], "x_axis": [ 0.078, 0.996, 0.036 ], "y_axis": [ -0.799, 0.084, -0.595 ], "z_axis": [ -0.596, 0.018, 0.803 ], "quaternion": [ 0.701, -0.219, -0.225, 0.640 ] } }, { "index": 452, "index_chain": 452, "chain_name": "2", "nt_resnum": 528, "nt_name": "A", "nt_code": "A", "nt_id": "///2/528", "linked_nts": [ "///2/527", "///2/529" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -58.961, "beta": 167.562, "gamma": 54.370, "delta": 80.305, "epsilon": -126.800, "zeta": -97.022, "epsilon_zeta": -29.777, "bb_type": "--", "chi": -169.275, "glyco_bond": "anti", "C5prime_xyz": [ -1.531, 8.633, 1.053 ], "P_xyz": [ 1.031, 9.086, 1.362 ], "form": "A", "ssZp": 4.577, "Dp": 4.725, "splay_angle": 21.563, "splay_distance": 3.339, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 174.339, "theta": -153.261, "eta_prime": -176.011, "theta_prime": -150.696, "eta_base": -144.426, "theta_base": -130.688, "v0": 1.643, "v1": -24.050, "v2": 36.022, "v3": -36.079, "v4": 21.721, "amplitude": 37.502, "phase_angle": 16.151, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 219.761, 145.852, 223.993 ], "x_axis": [ -0.103, 0.860, -0.499 ], "y_axis": [ -0.648, -0.439, -0.623 ], "z_axis": [ -0.755, 0.259, 0.603 ], "quaternion": [ 0.515, -0.428, -0.124, 0.732 ] } }, { "index": 453, "index_chain": 453, "chain_name": "2", "nt_resnum": 529, "nt_name": "A", "nt_code": "A", "nt_id": "///2/529", "linked_nts": [ "///2/528", "///2/530" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -68.690, "beta": 153.566, "gamma": 60.307, "delta": 81.663, "epsilon": -144.191, "zeta": -68.669, "epsilon_zeta": -75.522, "bb_type": "BI", "chi": -166.075, "glyco_bond": "anti", "C5prime_xyz": [ -1.329, 8.611, 0.880 ], "P_xyz": [ 1.263, 8.812, 0.523 ], "form": "A", "ssZp": 4.576, "Dp": 4.690, "splay_angle": 22.117, "splay_distance": 3.459, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 159.399, "theta": -133.996, "eta_prime": 169.995, "theta_prime": -136.173, "eta_base": -158.257, "theta_base": -98.616, "v0": 4.062, "v1": -25.779, "v2": 36.502, "v3": -35.160, "v4": 19.622, "amplitude": 37.390, "phase_angle": 12.517, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.401, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 218.177, 147.217, 226.596 ], "x_axis": [ -0.242, 0.448, -0.861 ], "y_axis": [ -0.619, -0.754, -0.219 ], "z_axis": [ -0.747, 0.480, 0.459 ], "quaternion": [ 0.340, -0.513, 0.083, 0.783 ] } }, { "index": 454, "index_chain": 454, "chain_name": "2", "nt_resnum": 530, "nt_name": "U", "nt_code": "U", "nt_id": "///2/530", "linked_nts": [ "///2/529", "///2/531" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop", "alpha": -67.476, "beta": 167.221, "gamma": 59.990, "delta": 80.931, "epsilon": -146.106, "zeta": -78.482, "epsilon_zeta": -67.624, "bb_type": "BI", "chi": -159.586, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.713, 0.492 ], "P_xyz": [ 1.217, 9.079, 0.271 ], "form": ".", "ssZp": 4.429, "Dp": 4.671, "splay_angle": 33.502, "splay_distance": 4.962, "splay_ratio": 0.292, "d22": null, "d64": null, "eta": 164.969, "theta": -144.143, "eta_prime": -175.635, "theta_prime": -166.747, "eta_base": -116.111, "theta_base": 144.294, "v0": 3.202, "v1": -25.311, "v2": 36.580, "v3": -35.715, "v4": 20.493, "amplitude": 37.671, "phase_angle": 13.821, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.908, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 216.042, 149.904, 226.162 ], "x_axis": [ -0.585, -0.166, -0.794 ], "y_axis": [ -0.435, -0.762, 0.480 ], "z_axis": [ -0.684, 0.626, 0.374 ], "quaternion": [ 0.082, -0.448, 0.335, 0.825 ] } }, { "index": 455, "index_chain": 455, "chain_name": "2", "nt_resnum": 531, "nt_name": "A", "nt_code": "A", "nt_id": "///2/531", "linked_nts": [ "///2/530", "///2/532" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-stack,non-pair-contact,internal-loop", "alpha": 178.737, "beta": 130.747, "gamma": 159.768, "delta": 80.768, "epsilon": 161.311, "zeta": 169.395, "epsilon_zeta": -8.083, "bb_type": "--", "chi": -15.441, "glyco_bond": "syn", "C5prime_xyz": [ -5.397, 4.456, -1.846 ], "P_xyz": [ -7.437, 3.062, -0.937 ], "form": ".", "ssZp": -2.984, "Dp": 3.788, "splay_angle": 71.445, "splay_distance": 11.636, "splay_ratio": 0.584, "d22": null, "d64": null, "eta": 162.088, "theta": -31.431, "eta_prime": 149.794, "theta_prime": -50.195, "eta_base": 115.000, "theta_base": -71.855, "v0": -9.252, "v1": -12.601, "v2": 28.022, "v3": -34.341, "v4": 27.378, "amplitude": 33.837, "phase_angle": 34.090, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.518, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 217.791, 151.605, 230.483 ], "x_axis": [ 0.574, 0.796, -0.195 ], "y_axis": [ -0.494, 0.526, 0.692 ], "z_axis": [ 0.653, -0.301, 0.695 ], "quaternion": [ 0.836, 0.297, 0.254, 0.386 ] } }, { "index": 456, "index_chain": 456, "chain_name": "2", "nt_resnum": 532, "nt_name": "C", "nt_code": "C", "nt_id": "///2/532", "linked_nts": [ "///2/531", "///2/533" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,non-stack,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,internal-loop,phosphate", "alpha": -48.023, "beta": -81.515, "gamma": -128.198, "delta": 146.531, "epsilon": -132.076, "zeta": -130.101, "epsilon_zeta": -1.975, "bb_type": "--", "chi": -131.709, "glyco_bond": "anti", "C5prime_xyz": [ -2.349, 8.706, -0.603 ], "P_xyz": [ -2.401, 9.377, -3.136 ], "form": ".", "ssZp": 1.621, "Dp": 1.657, "splay_angle": 21.070, "splay_distance": 3.456, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 174.726, "theta": 124.046, "eta_prime": -172.415, "theta_prime": 151.559, "eta_base": -161.686, "theta_base": 174.398, "v0": -24.516, "v1": 38.295, "v2": -36.536, "v3": 23.408, "v4": 0.470, "amplitude": 38.765, "phase_angle": 160.476, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 207.223, 151.484, 225.615 ], "x_axis": [ 0.332, -0.942, -0.048 ], "y_axis": [ 0.029, -0.041, 0.999 ], "z_axis": [ -0.943, -0.333, 0.014 ], "quaternion": [ 0.571, 0.583, -0.391, -0.425 ] } }, { "index": 457, "index_chain": 457, "chain_name": "2", "nt_resnum": 533, "nt_name": "A", "nt_code": "A", "nt_id": "///2/533", "linked_nts": [ "///2/532", "///2/534" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -121.826, "beta": -179.911, "gamma": 41.660, "delta": 82.252, "epsilon": -102.740, "zeta": -113.363, "epsilon_zeta": 10.623, "bb_type": "--", "chi": -140.229, "glyco_bond": "anti", "C5prime_xyz": [ -0.857, 8.553, -0.658 ], "P_xyz": [ 1.766, 8.697, -0.706 ], "form": ".", "ssZp": 3.051, "Dp": 4.823, "splay_angle": 33.291, "splay_distance": 5.902, "splay_ratio": 0.290, "d22": null, "d64": null, "eta": 139.428, "theta": -108.774, "eta_prime": 137.501, "theta_prime": -104.280, "eta_base": 160.881, "theta_base": -104.676, "v0": 7.051, "v1": -27.769, "v2": 36.913, "v3": -33.832, "v4": 16.916, "amplitude": 37.274, "phase_angle": 7.980, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 204.259, 153.083, 224.839 ], "x_axis": [ 0.397, -0.733, 0.552 ], "y_axis": [ -0.205, 0.515, 0.832 ], "z_axis": [ -0.895, -0.444, 0.054 ], "quaternion": [ 0.701, 0.455, -0.516, -0.188 ] } }, { "index": 458, "index_chain": 458, "chain_name": "2", "nt_resnum": 534, "nt_name": "G", "nt_code": "G", "nt_id": "///2/534", "linked_nts": [ "///2/533", "///2/535" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 90.783, "beta": -78.518, "gamma": -128.681, "delta": 80.964, "epsilon": -154.080, "zeta": -90.592, "epsilon_zeta": -63.488, "bb_type": "BI", "chi": -164.883, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.728, 0.817 ], "P_xyz": [ -2.085, 10.414, -1.039 ], "form": ".", "ssZp": 4.510, "Dp": 4.599, "splay_angle": 29.045, "splay_distance": 4.426, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": -130.642, "theta": 126.317, "eta_prime": -124.382, "theta_prime": 151.544, "eta_base": -109.741, "theta_base": 177.508, "v0": 2.483, "v1": -24.427, "v2": 35.869, "v3": -35.458, "v4": 20.837, "amplitude": 37.118, "phase_angle": 14.906, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 201.494, 148.204, 226.681 ], "x_axis": [ 0.020, -0.667, 0.745 ], "y_axis": [ -0.307, 0.705, 0.640 ], "z_axis": [ -0.952, -0.241, -0.191 ], "quaternion": [ 0.619, 0.356, -0.685, -0.146 ] } }, { "index": 459, "index_chain": 459, "chain_name": "2", "nt_resnum": 535, "nt_name": "G", "nt_code": "G", "nt_id": "///2/535", "linked_nts": [ "///2/534", "///2/536" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -50.032, "beta": 159.659, "gamma": 53.964, "delta": 81.803, "epsilon": -138.265, "zeta": -16.194, "epsilon_zeta": -122.071, "bb_type": "--", "chi": -170.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.239, 8.549, 1.166 ], "P_xyz": [ 1.380, 8.638, 1.233 ], "form": ".", "ssZp": 4.657, "Dp": 4.730, "splay_angle": 28.475, "splay_distance": 5.267, "splay_ratio": 0.270, "d22": null, "d64": null, "eta": 177.287, "theta": -87.090, "eta_prime": -175.032, "theta_prime": -117.302, "eta_base": -150.338, "theta_base": -120.920, "v0": 5.511, "v1": -26.931, "v2": 36.997, "v3": -34.826, "v4": 18.486, "amplitude": 37.614, "phase_angle": 10.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.605, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 198.226, 146.807, 224.042 ], "x_axis": [ -0.139, -0.368, 0.919 ], "y_axis": [ -0.211, 0.918, 0.336 ], "z_axis": [ -0.968, -0.147, -0.205 ], "quaternion": [ 0.627, 0.192, -0.752, -0.063 ] } }, { "index": 460, "index_chain": 460, "chain_name": "2", "nt_resnum": 536, "nt_name": "A", "nt_code": "A", "nt_id": "///2/536", "linked_nts": [ "///2/535", "///2/537" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -173.279, "beta": 99.564, "gamma": 169.439, "delta": 81.380, "epsilon": -143.195, "zeta": -58.268, "epsilon_zeta": -84.927, "bb_type": "BI", "chi": 176.106, "glyco_bond": "anti", "C5prime_xyz": [ -1.648, 8.324, 1.867 ], "P_xyz": [ -1.822, 10.699, 0.770 ], "form": ".", "ssZp": 4.606, "Dp": 4.643, "splay_angle": 42.640, "splay_distance": 6.193, "splay_ratio": 0.364, "d22": null, "d64": null, "eta": 146.165, "theta": -157.820, "eta_prime": 158.314, "theta_prime": -142.891, "eta_base": 176.765, "theta_base": -81.574, "v0": 1.811, "v1": -23.638, "v2": 35.241, "v3": -35.198, "v4": 21.074, "amplitude": 36.636, "phase_angle": 15.864, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 194.943, 142.718, 223.553 ], "x_axis": [ 0.459, -0.004, 0.888 ], "y_axis": [ -0.067, 0.997, 0.039 ], "z_axis": [ -0.886, -0.078, 0.457 ], "quaternion": [ 0.853, 0.034, -0.520, 0.019 ] } }, { "index": 461, "index_chain": 461, "chain_name": "2", "nt_resnum": 537, "nt_name": "C", "nt_code": "C", "nt_id": "///2/537", "linked_nts": [ "///2/536", "///2/538" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -142.850, "beta": -125.923, "gamma": 74.746, "delta": 81.355, "epsilon": -157.981, "zeta": -77.398, "epsilon_zeta": -80.583, "bb_type": "BI", "chi": -168.917, "glyco_bond": "anti", "C5prime_xyz": [ -1.350, 8.653, 1.052 ], "P_xyz": [ 1.057, 8.297, 2.029 ], "form": ".", "ssZp": 4.567, "Dp": 4.588, "splay_angle": 26.441, "splay_distance": 4.190, "splay_ratio": 0.233, "d22": 4.925, "d64": 5.161, "eta": 135.552, "theta": -149.254, "eta_prime": 164.901, "theta_prime": -148.825, "eta_base": -118.651, "theta_base": -144.500, "v0": 3.072, "v1": -25.130, "v2": 36.405, "v3": -35.619, "v4": 20.508, "amplitude": 37.519, "phase_angle": 13.995, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 193.142, 145.015, 229.015 ], "x_axis": [ 0.535, 0.837, -0.117 ], "y_axis": [ -0.430, 0.150, -0.890 ], "z_axis": [ -0.728, 0.527, 0.440 ], "quaternion": [ 0.729, -0.486, -0.209, 0.435 ] } }, { "index": 462, "index_chain": 462, "chain_name": "2", "nt_resnum": 538, "nt_name": "U", "nt_code": "U", "nt_id": "///2/538", "linked_nts": [ "///2/537", "///2/539" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.288, "beta": -178.328, "gamma": 53.220, "delta": 82.049, "epsilon": -170.941, "zeta": -84.027, "epsilon_zeta": -86.915, "bb_type": "BI", "chi": -166.002, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.708, 0.875 ], "P_xyz": [ 0.960, 9.215, 1.592 ], "form": "A", "ssZp": 4.337, "Dp": 4.382, "splay_angle": 23.085, "splay_distance": 3.744, "splay_ratio": 0.205, "d22": 4.834, "d64": 4.935, "eta": 172.535, "theta": -144.913, "eta_prime": -179.175, "theta_prime": -151.459, "eta_base": -162.583, "theta_base": -136.655, "v0": 0.267, "v1": -21.819, "v2": 33.794, "v3": -34.581, "v4": 21.645, "amplitude": 35.568, "phase_angle": 18.172, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 191.314, 145.291, 232.775 ], "x_axis": [ 0.470, 0.735, -0.489 ], "y_axis": [ -0.591, -0.149, -0.792 ], "z_axis": [ -0.655, 0.662, 0.365 ], "quaternion": [ 0.649, -0.560, -0.064, 0.511 ] } }, { "index": 463, "index_chain": 463, "chain_name": "2", "nt_resnum": 539, "nt_name": "C", "nt_code": "C", "nt_id": "///2/539", "linked_nts": [ "///2/538", "///2/540" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 178.105, "beta": -159.116, "gamma": 150.296, "delta": 82.230, "epsilon": -139.835, "zeta": -74.481, "epsilon_zeta": -65.353, "bb_type": "BI", "chi": 179.341, "glyco_bond": "anti", "C5prime_xyz": [ -1.239, 8.379, 1.750 ], "P_xyz": [ 1.036, 9.438, 1.002 ], "form": "A", "ssZp": 4.649, "Dp": 4.674, "splay_angle": 24.196, "splay_distance": 3.771, "splay_ratio": 0.212, "d22": 4.529, "d64": 4.522, "eta": 159.872, "theta": -150.701, "eta_prime": 171.691, "theta_prime": -151.194, "eta_base": -157.324, "theta_base": -126.392, "v0": 4.129, "v1": -25.118, "v2": 35.418, "v3": -34.023, "v4": 18.845, "amplitude": 36.240, "phase_angle": 12.227, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.029, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 190.506, 147.285, 235.839 ], "x_axis": [ 0.182, 0.540, -0.822 ], "y_axis": [ -0.771, -0.440, -0.460 ], "z_axis": [ -0.610, 0.717, 0.336 ], "quaternion": [ 0.519, -0.567, 0.102, 0.631 ] } }, { "index": 464, "index_chain": 464, "chain_name": "2", "nt_resnum": 540, "nt_name": "U", "nt_code": "U", "nt_id": "///2/540", "linked_nts": [ "///2/539", "///2/541" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": -62.992, "beta": 177.133, "gamma": 50.295, "delta": 83.401, "epsilon": -90.164, "zeta": -32.984, "epsilon_zeta": -57.180, "bb_type": "--", "chi": -166.443, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.641, 0.918 ], "P_xyz": [ 1.163, 8.985, 1.516 ], "form": ".", "ssZp": 4.173, "Dp": 4.644, "splay_angle": 65.991, "splay_distance": 10.069, "splay_ratio": 0.545, "d22": 8.514, "d64": 10.355, "eta": -175.593, "theta": -34.608, "eta_prime": -166.193, "theta_prime": -79.932, "eta_base": -134.159, "theta_base": -133.696, "v0": 2.524, "v1": -23.648, "v2": 34.549, "v3": -34.046, "v4": 19.919, "amplitude": 35.709, "phase_angle": 14.649, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 190.003, 150.735, 237.278 ], "x_axis": [ -0.265, 0.151, -0.952 ], "y_axis": [ -0.730, -0.677, 0.096 ], "z_axis": [ -0.630, 0.720, 0.290 ], "quaternion": [ 0.295, -0.530, 0.273, 0.747 ] } }, { "index": 465, "index_chain": 465, "chain_name": "2", "nt_resnum": 541, "nt_name": "U", "nt_code": "U", "nt_id": "///2/541", "linked_nts": [ "///2/540", "///2/542" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": 157.777, "beta": 145.434, "gamma": 36.851, "delta": 81.136, "epsilon": -150.194, "zeta": -78.356, "epsilon_zeta": -71.838, "bb_type": "BI", "chi": -176.711, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.538, 1.483 ], "P_xyz": [ 0.940, 8.575, 2.227 ], "form": ".", "ssZp": 4.522, "Dp": 4.560, "splay_angle": 33.533, "splay_distance": 5.170, "splay_ratio": 0.290, "d22": 4.223, "d64": 4.286, "eta": -27.419, "theta": -108.458, "eta_prime": 26.419, "theta_prime": -112.244, "eta_base": 42.046, "theta_base": -68.220, "v0": 0.683, "v1": -22.548, "v2": 34.604, "v3": -35.190, "v4": 21.755, "amplitude": 36.297, "phase_angle": 17.565, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.010, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 183.857, 156.541, 242.746 ], "x_axis": [ 0.284, -0.244, 0.927 ], "y_axis": [ -0.444, -0.891, -0.098 ], "z_axis": [ 0.850, -0.384, -0.361 ], "quaternion": [ 0.090, 0.796, -0.216, 0.558 ] } }, { "index": 466, "index_chain": 466, "chain_name": "2", "nt_resnum": 542, "nt_name": "U", "nt_code": "U", "nt_id": "///2/542", "linked_nts": [ "///2/541", "///2/543" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": 176.409, "beta": -138.063, "gamma": 145.076, "delta": 82.647, "epsilon": -143.709, "zeta": -96.198, "epsilon_zeta": -47.512, "bb_type": "BI", "chi": -172.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.520, 8.592, 1.287 ], "P_xyz": [ 0.858, 9.157, 0.347 ], "form": ".", "ssZp": 4.512, "Dp": 4.568, "splay_angle": 32.254, "splay_distance": 5.074, "splay_ratio": 0.279, "d22": 5.409, "d64": 5.402, "eta": 152.915, "theta": -128.287, "eta_prime": -175.071, "theta_prime": -137.806, "eta_base": -103.784, "theta_base": -113.249, "v0": 0.550, "v1": -21.724, "v2": 33.376, "v3": -34.021, "v4": 21.107, "amplitude": 35.042, "phase_angle": 17.736, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 187.810, 153.694, 244.476 ], "x_axis": [ -0.248, -0.871, 0.424 ], "y_axis": [ -0.443, -0.288, -0.849 ], "z_axis": [ 0.862, -0.398, -0.314 ], "quaternion": [ -0.194, 0.582, -0.564, 0.553 ] } }, { "index": 467, "index_chain": 467, "chain_name": "2", "nt_resnum": 543, "nt_name": "C", "nt_code": "C", "nt_id": "///2/543", "linked_nts": [ "///2/542", "///2/544" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": -179.698, "beta": -145.149, "gamma": 149.645, "delta": 82.412, "epsilon": -144.960, "zeta": -5.431, "epsilon_zeta": -139.530, "bb_type": "--", "chi": -165.415, "glyco_bond": "anti", "C5prime_xyz": [ -1.198, 8.672, 0.868 ], "P_xyz": [ 0.926, 9.277, -0.542 ], "form": ".", "ssZp": 4.539, "Dp": 4.658, "splay_angle": 68.594, "splay_distance": 9.980, "splay_ratio": 0.563, "d22": null, "d64": null, "eta": 157.867, "theta": -81.770, "eta_prime": 179.259, "theta_prime": -81.358, "eta_base": -136.028, "theta_base": -44.406, "v0": 3.594, "v1": -24.737, "v2": 35.306, "v3": -34.212, "v4": 19.331, "amplitude": 36.244, "phase_angle": 13.064, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 191.880, 150.663, 244.547 ], "x_axis": [ -0.504, -0.835, -0.221 ], "y_axis": [ -0.138, 0.331, -0.933 ], "z_axis": [ 0.853, -0.440, -0.283 ], "quaternion": [ 0.369, -0.334, 0.728, -0.472 ] } }, { "index": 468, "index_chain": 468, "chain_name": "2", "nt_resnum": 544, "nt_name": "G", "nt_code": "G", "nt_id": "///2/544", "linked_nts": [ "///2/543", "///2/545" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,cap-donor", "alpha": -103.605, "beta": -179.307, "gamma": 63.022, "delta": 82.622, "epsilon": -146.225, "zeta": -70.234, "epsilon_zeta": -75.991, "bb_type": "BI", "chi": -174.732, "glyco_bond": "anti", "C5prime_xyz": [ -1.208, 8.445, 1.394 ], "P_xyz": [ 1.390, 8.527, 1.770 ], "form": "A", "ssZp": 4.696, "Dp": 4.702, "splay_angle": 24.327, "splay_distance": 3.818, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 145.929, "theta": -138.564, "eta_prime": -164.210, "theta_prime": -138.035, "eta_base": -82.793, "theta_base": -115.394, "v0": 6.467, "v1": -27.618, "v2": 37.148, "v3": -34.424, "v4": 17.656, "amplitude": 37.606, "phase_angle": 8.945, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 190.212, 147.377, 235.272 ], "x_axis": [ -0.180, 0.655, -0.734 ], "y_axis": [ 0.572, 0.677, 0.464 ], "z_axis": [ 0.800, -0.337, -0.496 ], "quaternion": [ 0.500, 0.400, 0.767, 0.041 ] } }, { "index": 469, "index_chain": 469, "chain_name": "2", "nt_resnum": 545, "nt_name": "A", "nt_code": "A", "nt_id": "///2/545", "linked_nts": [ "///2/544", "///2/546" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.338, "beta": 173.736, "gamma": 55.483, "delta": 79.160, "epsilon": -143.066, "zeta": -83.087, "epsilon_zeta": -59.980, "bb_type": "BI", "chi": -170.076, "glyco_bond": "anti", "C5prime_xyz": [ -1.506, 8.613, 1.094 ], "P_xyz": [ 1.043, 9.092, 1.461 ], "form": "A", "ssZp": 4.642, "Dp": 4.698, "splay_angle": 25.785, "splay_distance": 4.030, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 170.328, "theta": -151.373, "eta_prime": -175.125, "theta_prime": -148.854, "eta_base": -134.407, "theta_base": -126.215, "v0": 2.283, "v1": -25.068, "v2": 37.077, "v3": -36.786, "v4": 21.747, "amplitude": 38.436, "phase_angle": 15.283, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.983, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 191.495, 145.663, 232.111 ], "x_axis": [ 0.155, 0.922, -0.355 ], "y_axis": [ 0.583, 0.205, 0.786 ], "z_axis": [ 0.797, -0.329, -0.506 ], "quaternion": [ 0.462, 0.603, 0.624, 0.183 ] } }, { "index": 470, "index_chain": 470, "chain_name": "2", "nt_resnum": 546, "nt_name": "G", "nt_code": "G", "nt_id": "///2/546", "linked_nts": [ "///2/545", "///2/547" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -57.927, "beta": 155.984, "gamma": 64.479, "delta": 79.719, "epsilon": -122.035, "zeta": -65.780, "epsilon_zeta": -56.255, "bb_type": "--", "chi": -175.167, "glyco_bond": "anti", "C5prime_xyz": [ -1.685, 8.583, 1.376 ], "P_xyz": [ 0.879, 9.107, 1.285 ], "form": ".", "ssZp": 4.681, "Dp": 4.747, "splay_angle": 43.426, "splay_distance": 6.837, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": 177.344, "theta": -80.918, "eta_prime": -171.151, "theta_prime": -90.877, "eta_base": -137.063, "theta_base": -40.322, "v0": 1.635, "v1": -24.421, "v2": 36.638, "v3": -36.709, "v4": 22.102, "amplitude": 38.152, "phase_angle": 16.198, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.662, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 193.332, 144.634, 228.675 ], "x_axis": [ 0.417, 0.907, 0.054 ], "y_axis": [ 0.425, -0.247, 0.871 ], "z_axis": [ 0.803, -0.341, -0.488 ], "quaternion": [ 0.413, 0.734, 0.454, 0.292 ] } }, { "index": 471, "index_chain": 471, "chain_name": "2", "nt_resnum": 547, "nt_name": "G", "nt_code": "G", "nt_id": "///2/547", "linked_nts": [ "///2/546", "///2/548" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 164.075, "beta": -151.269, "gamma": 150.160, "delta": 82.386, "epsilon": -128.965, "zeta": 141.704, "epsilon_zeta": 89.331, "bb_type": "BII", "chi": -169.982, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.621, 1.124 ], "P_xyz": [ 0.746, 9.531, -0.135 ], "form": ".", "ssZp": 4.599, "Dp": 4.718, "splay_angle": 84.831, "splay_distance": 12.421, "splay_ratio": 0.675, "d22": null, "d64": null, "eta": 134.918, "theta": 91.233, "eta_prime": 174.607, "theta_prime": 63.835, "eta_base": -101.436, "theta_base": 55.457, "v0": 3.028, "v1": -24.265, "v2": 35.065, "v3": -34.333, "v4": 19.764, "amplitude": 36.130, "phase_angle": 13.948, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 198.540, 148.041, 231.507 ], "x_axis": [ 0.197, -0.012, 0.980 ], "y_axis": [ 0.011, -1.000, -0.014 ], "z_axis": [ 0.980, 0.014, -0.196 ], "quaternion": [ -0.009, 0.773, -0.000, 0.634 ] } }, { "index": 472, "index_chain": 472, "chain_name": "2", "nt_resnum": 548, "nt_name": "C", "nt_code": "C", "nt_id": "///2/548", "linked_nts": [ "///2/547", "///2/549" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,internal-loop", "alpha": 47.544, "beta": -118.379, "gamma": 178.197, "delta": 80.780, "epsilon": -162.626, "zeta": 49.132, "epsilon_zeta": 148.242, "bb_type": "--", "chi": -148.994, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.816, -0.155 ], "P_xyz": [ -0.380, 9.094, -2.566 ], "form": ".", "ssZp": 4.136, "Dp": 4.535, "splay_angle": 64.590, "splay_distance": 10.768, "splay_ratio": 0.539, "d22": 4.129, "d64": 5.019, "eta": 126.558, "theta": -16.622, "eta_prime": 140.182, "theta_prime": -65.975, "eta_base": 157.365, "theta_base": -64.035, "v0": 1.606, "v1": -23.800, "v2": 35.677, "v3": -35.747, "v4": 21.536, "amplitude": 37.150, "phase_angle": 16.189, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5n", "suiteness": 0.042, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 193.727, 137.989, 226.022 ], "x_axis": [ -0.300, 0.895, -0.329 ], "y_axis": [ 0.954, 0.279, -0.111 ], "z_axis": [ -0.007, -0.347, -0.938 ], "quaternion": [ 0.101, 0.583, 0.793, -0.144 ] } }, { "index": 473, "index_chain": 473, "chain_name": "2", "nt_resnum": 549, "nt_name": "C", "nt_code": "C", "nt_id": "///2/549", "linked_nts": [ "///2/548", "///2/550" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,cap-acceptor", "alpha": 68.966, "beta": 140.880, "gamma": 169.764, "delta": 80.748, "epsilon": -117.194, "zeta": -38.402, "epsilon_zeta": -78.792, "bb_type": "--", "chi": -173.666, "glyco_bond": "anti", "C5prime_xyz": [ -1.116, 8.494, 1.347 ], "P_xyz": [ -0.401, 10.823, 0.376 ], "form": ".", "ssZp": 4.686, "Dp": 4.808, "splay_angle": 34.891, "splay_distance": 5.952, "splay_ratio": 0.310, "d22": 3.879, "d64": 5.334, "eta": 69.659, "theta": -149.504, "eta_prime": 109.746, "theta_prime": -135.157, "eta_base": 164.646, "theta_base": -98.905, "v0": 5.732, "v1": -27.531, "v2": 37.734, "v3": -35.423, "v4": 18.710, "amplitude": 38.338, "phase_angle": 10.188, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5j", "suiteness": 0.178, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 198.174, 146.608, 221.344 ], "x_axis": [ -0.244, 0.025, 0.969 ], "y_axis": [ 0.298, -0.949, 0.100 ], "z_axis": [ 0.923, 0.313, 0.224 ], "quaternion": [ -0.088, 0.608, 0.133, 0.777 ] } }, { "index": 474, "index_chain": 474, "chain_name": "2", "nt_resnum": 550, "nt_name": "C", "nt_code": "C", "nt_id": "///2/550", "linked_nts": [ "///2/549", "///2/551" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor", "alpha": -93.435, "beta": 113.165, "gamma": 164.162, "delta": 146.415, "epsilon": -118.857, "zeta": -49.178, "epsilon_zeta": -69.679, "bb_type": "--", "chi": -179.191, "glyco_bond": "anti", "C5prime_xyz": [ -1.886, 8.260, 1.915 ], "P_xyz": [ -0.304, 10.295, 1.399 ], "form": ".", "ssZp": 0.936, "Dp": 1.352, "splay_angle": 34.649, "splay_distance": 5.774, "splay_ratio": 0.299, "d22": 6.880, "d64": 6.666, "eta": -106.786, "theta": -122.725, "eta_prime": -95.839, "theta_prime": -144.914, "eta_base": -50.951, "theta_base": -133.096, "v0": -19.253, "v1": 33.583, "v2": -34.326, "v3": 24.081, "v4": -3.244, "amplitude": 35.313, "phase_angle": 166.424, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 200.226, 148.069, 226.737 ], "x_axis": [ 0.020, -0.646, 0.763 ], "y_axis": [ 0.359, -0.708, -0.608 ], "z_axis": [ 0.933, 0.286, 0.218 ], "quaternion": [ -0.364, 0.614, -0.117, 0.690 ] } }, { "index": 475, "index_chain": 475, "chain_name": "2", "nt_resnum": 551, "nt_name": "U", "nt_code": "U", "nt_id": "///2/551", "linked_nts": [ "///2/550", "///2/552" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -170.111, "beta": 114.439, "gamma": 115.074, "delta": 81.977, "epsilon": -122.605, "zeta": -84.038, "epsilon_zeta": -38.566, "bb_type": "--", "chi": -151.266, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.736, -0.003 ], "P_xyz": [ -0.372, 9.087, -2.433 ], "form": ".", "ssZp": 3.955, "Dp": 4.741, "splay_angle": 28.500, "splay_distance": 4.522, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 82.345, "theta": -153.947, "eta_prime": 136.346, "theta_prime": -155.963, "eta_base": 165.945, "theta_base": -113.744, "v0": 3.168, "v1": -24.811, "v2": 35.818, "v3": -34.958, "v4": 20.075, "amplitude": 36.881, "phase_angle": 13.789, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 203.175, 152.740, 225.054 ], "x_axis": [ 0.442, -0.683, 0.582 ], "y_axis": [ 0.299, -0.499, -0.813 ], "z_axis": [ 0.846, 0.533, -0.017 ], "quaternion": [ -0.481, 0.700, -0.137, 0.510 ] } }, { "index": 476, "index_chain": 476, "chain_name": "2", "nt_resnum": 552, "nt_name": "G", "nt_code": "G", "nt_id": "///2/552", "linked_nts": [ "///2/551", "///2/553" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -64.738, "beta": 144.810, "gamma": 66.122, "delta": 83.969, "epsilon": -93.046, "zeta": -120.356, "epsilon_zeta": 27.310, "bb_type": "--", "chi": -172.762, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.527, 1.273 ], "P_xyz": [ 1.185, 8.671, 0.765 ], "form": ".", "ssZp": 4.449, "Dp": 4.720, "splay_angle": 4.162, "splay_distance": 2.745, "splay_ratio": 0.173, "d22": null, "d64": null, "eta": 171.839, "theta": -145.101, "eta_prime": -171.323, "theta_prime": -131.623, "eta_base": -115.913, "theta_base": 62.846, "v0": 4.600, "v1": -25.452, "v2": 35.423, "v3": -33.747, "v4": 18.434, "amplitude": 36.146, "phase_angle": 11.474, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.359, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 207.551, 151.871, 225.790 ], "x_axis": [ 0.121, -0.980, -0.160 ], "y_axis": [ -0.045, 0.156, -0.987 ], "z_axis": [ 0.992, 0.126, -0.026 ], "quaternion": [ 0.559, -0.498, 0.515, -0.418 ] } }, { "index": 477, "index_chain": 477, "chain_name": "2", "nt_resnum": 553, "nt_name": "U", "nt_code": "U", "nt_id": "///2/553", "linked_nts": [ "///2/552", "///2/554" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop,cap-donor", "alpha": -62.697, "beta": 142.430, "gamma": 72.174, "delta": 153.217, "epsilon": -46.084, "zeta": -158.027, "epsilon_zeta": 111.943, "bb_type": "--", "chi": -55.727, "glyco_bond": "--", "C5prime_xyz": [ -3.031, 6.133, -3.246 ], "P_xyz": [ -0.872, 4.992, -4.248 ], "form": ".", "ssZp": -0.577, "Dp": 0.563, "splay_angle": 30.780, "splay_distance": 4.922, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": -136.169, "theta": -139.157, "eta_prime": -126.277, "theta_prime": -174.506, "eta_base": 59.061, "theta_base": -111.299, "v0": -14.888, "v1": 32.325, "v2": -36.473, "v3": 28.773, "v4": -8.894, "amplitude": 36.604, "phase_angle": 175.139, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 208.190, 153.337, 223.558 ], "x_axis": [ 0.058, -0.923, -0.380 ], "y_axis": [ 0.931, 0.187, -0.312 ], "z_axis": [ 0.359, -0.336, 0.871 ], "quaternion": [ 0.727, 0.008, 0.254, -0.637 ] } }, { "index": 478, "index_chain": 478, "chain_name": "2", "nt_resnum": 554, "nt_name": "A", "nt_code": "A", "nt_id": "///2/554", "linked_nts": [ "///2/553", "///2/555" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor,splayed-apart", "alpha": 4.500, "beta": -99.350, "gamma": -171.416, "delta": 79.701, "epsilon": -115.855, "zeta": -51.834, "epsilon_zeta": -64.021, "bb_type": "--", "chi": -100.302, "glyco_bond": "anti", "C5prime_xyz": [ -2.242, 7.756, -2.656 ], "P_xyz": [ -3.024, 6.268, -4.665 ], "form": ".", "ssZp": 0.280, "Dp": 4.723, "splay_angle": 124.929, "splay_distance": 18.319, "splay_ratio": 0.887, "d22": null, "d64": null, "eta": 115.641, "theta": -113.304, "eta_prime": 138.535, "theta_prime": -146.556, "eta_base": -165.883, "theta_base": -140.254, "v0": 0.647, "v1": -23.438, "v2": 36.080, "v3": -36.686, "v4": 22.706, "amplitude": 37.860, "phase_angle": 17.638, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 212.800, 152.552, 225.095 ], "x_axis": [ 0.581, -0.650, -0.491 ], "y_axis": [ 0.770, 0.634, 0.072 ], "z_axis": [ 0.264, -0.420, 0.868 ], "quaternion": [ 0.878, 0.140, 0.215, -0.404 ] } }, { "index": 479, "index_chain": 479, "chain_name": "2", "nt_resnum": 555, "nt_name": "A", "nt_code": "A", "nt_id": "///2/555", "linked_nts": [ "///2/554", "///2/556" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 178.356, "beta": 123.095, "gamma": -48.310, "delta": 148.921, "epsilon": -105.205, "zeta": 162.382, "epsilon_zeta": 92.414, "bb_type": "BII", "chi": -119.171, "glyco_bond": "anti", "C5prime_xyz": [ -1.874, 8.475, -1.205 ], "P_xyz": [ -1.157, 10.488, 0.318 ], "form": ".", "ssZp": 0.990, "Dp": 1.046, "splay_angle": 109.843, "splay_distance": 16.523, "splay_ratio": 0.818, "d22": null, "d64": null, "eta": -73.759, "theta": 159.019, "eta_prime": -38.622, "theta_prime": 128.508, "eta_base": -60.004, "theta_base": 101.441, "v0": -19.747, "v1": 34.753, "v2": -35.649, "v3": 25.150, "v4": -3.580, "amplitude": 36.619, "phase_angle": 166.782, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 230.401, 157.397, 226.628 ], "x_axis": [ 0.256, 0.705, -0.661 ], "y_axis": [ -0.962, 0.253, -0.104 ], "z_axis": [ 0.094, 0.662, 0.743 ], "quaternion": [ 0.750, -0.255, 0.251, 0.556 ] } }, { "index": 480, "index_chain": 480, "chain_name": "2", "nt_resnum": 556, "nt_name": "U", "nt_code": "U", "nt_id": "///2/556", "linked_nts": [ "///2/555", "///2/557" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart", "alpha": -16.939, "beta": -164.789, "gamma": 160.260, "delta": 82.535, "epsilon": -152.154, "zeta": -74.852, "epsilon_zeta": -77.302, "bb_type": "BI", "chi": -161.404, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.726, 0.617 ], "P_xyz": [ 0.198, 10.013, -0.923 ], "form": "A", "ssZp": 4.384, "Dp": 4.544, "splay_angle": 22.387, "splay_distance": 3.552, "splay_ratio": 0.195, "d22": 4.380, "d64": 4.285, "eta": 27.867, "theta": -166.579, "eta_prime": 22.567, "theta_prime": -166.444, "eta_base": 34.374, "theta_base": -137.529, "v0": 1.166, "v1": -22.519, "v2": 34.034, "v3": -34.338, "v4": 20.946, "amplitude": 35.549, "phase_angle": 16.787, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 217.335, 147.291, 227.007 ], "x_axis": [ -0.379, 0.493, -0.783 ], "y_axis": [ 0.458, 0.835, 0.304 ], "z_axis": [ 0.804, -0.243, -0.542 ], "quaternion": [ 0.478, 0.286, 0.830, 0.018 ] } }, { "index": 481, "index_chain": 481, "chain_name": "2", "nt_resnum": 557, "nt_name": "U", "nt_code": "U", "nt_id": "///2/557", "linked_nts": [ "///2/556", "///2/558" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -60.686, "beta": 169.403, "gamma": 53.072, "delta": 81.518, "epsilon": -150.913, "zeta": -90.968, "epsilon_zeta": -59.945, "bb_type": "BI", "chi": -157.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.752, 0.409 ], "P_xyz": [ 1.178, 9.169, 0.517 ], "form": "A", "ssZp": 4.343, "Dp": 4.588, "splay_angle": 25.790, "splay_distance": 4.026, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 169.339, "theta": -159.684, "eta_prime": -176.825, "theta_prime": -158.260, "eta_base": -135.783, "theta_base": -139.555, "v0": 1.629, "v1": -23.375, "v2": 35.032, "v3": -35.072, "v4": 21.090, "amplitude": 36.466, "phase_angle": 16.118, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.965, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 219.178, 145.878, 224.319 ], "x_axis": [ -0.091, 0.876, -0.474 ], "y_axis": [ 0.643, 0.415, 0.643 ], "z_axis": [ 0.760, -0.246, -0.601 ], "quaternion": [ 0.425, 0.523, 0.726, 0.137 ] } }, { "index": 482, "index_chain": 482, "chain_name": "2", "nt_resnum": 558, "nt_name": "G", "nt_code": "G", "nt_id": "///2/558", "linked_nts": [ "///2/557", "///2/559" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -47.592, "beta": 159.360, "gamma": 51.143, "delta": 82.409, "epsilon": -177.345, "zeta": -94.249, "epsilon_zeta": -83.096, "bb_type": "BI", "chi": -157.868, "glyco_bond": "anti", "C5prime_xyz": [ -1.210, 8.748, 0.425 ], "P_xyz": [ 1.407, 8.883, 0.360 ], "form": "A", "ssZp": 4.282, "Dp": 4.385, "splay_angle": 22.861, "splay_distance": 3.588, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 171.665, "theta": -141.819, "eta_prime": -174.617, "theta_prime": -148.126, "eta_base": -144.299, "theta_base": -130.113, "v0": 3.287, "v1": -24.405, "v2": 35.103, "v3": -34.216, "v4": 19.523, "amplitude": 36.109, "phase_angle": 13.555, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.559, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 221.306, 144.097, 221.403 ], "x_axis": [ 0.182, 0.973, -0.143 ], "y_axis": [ 0.637, -0.006, 0.771 ], "z_axis": [ 0.749, -0.231, -0.621 ], "quaternion": [ 0.373, 0.672, 0.599, 0.225 ] } }, { "index": 483, "index_chain": 483, "chain_name": "2", "nt_resnum": 559, "nt_name": "G", "nt_code": "G", "nt_id": "///2/559", "linked_nts": [ "///2/558", "///2/560" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop", "alpha": 168.425, "beta": -128.211, "gamma": 152.700, "delta": 83.526, "epsilon": -102.342, "zeta": -125.075, "epsilon_zeta": 22.733, "bb_type": "--", "chi": -178.545, "glyco_bond": "anti", "C5prime_xyz": [ -1.631, 8.523, 1.591 ], "P_xyz": [ 0.710, 9.122, 0.579 ], "form": "A", "ssZp": 4.469, "Dp": 4.579, "splay_angle": 23.372, "splay_distance": 3.974, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 176.261, "theta": -133.266, "eta_prime": -172.521, "theta_prime": -148.445, "eta_base": -140.179, "theta_base": -142.582, "v0": 0.261, "v1": -21.329, "v2": 33.036, "v3": -33.853, "v4": 21.207, "amplitude": 34.780, "phase_angle": 18.220, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.026, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 222.932, 143.510, 218.259 ], "x_axis": [ 0.443, 0.868, 0.223 ], "y_axis": [ 0.520, -0.452, 0.725 ], "z_axis": [ 0.730, -0.205, -0.652 ], "quaternion": [ 0.291, 0.798, 0.435, 0.299 ] } }, { "index": 484, "index_chain": 484, "chain_name": "2", "nt_resnum": 560, "nt_name": "A", "nt_code": "A", "nt_id": "///2/560", "linked_nts": [ "///2/559", "///2/561" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": 90.801, "beta": -115.173, "gamma": -158.438, "delta": 83.085, "epsilon": -131.032, "zeta": -67.052, "epsilon_zeta": -63.980, "bb_type": "BI", "chi": 174.524, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.141, 1.986 ], "P_xyz": [ -0.182, 9.996, 0.584 ], "form": ".", "ssZp": 4.739, "Dp": 4.748, "splay_angle": 23.405, "splay_distance": 4.267, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 158.858, "theta": -129.463, "eta_prime": 171.862, "theta_prime": -141.223, "eta_base": -160.073, "theta_base": -108.406, "v0": 6.057, "v1": -26.853, "v2": 36.326, "v3": -33.841, "v4": 17.536, "amplitude": 36.818, "phase_angle": 9.379, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 224.140, 143.495, 214.473 ], "x_axis": [ 0.557, 0.683, 0.473 ], "y_axis": [ 0.388, -0.717, 0.579 ], "z_axis": [ 0.735, -0.139, -0.664 ], "quaternion": [ 0.209, 0.857, 0.312, 0.352 ] } }, { "index": 485, "index_chain": 485, "chain_name": "2", "nt_resnum": 561, "nt_name": "A", "nt_code": "A", "nt_id": "///2/561", "linked_nts": [ "///2/560", "///2/562" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": 160.411, "beta": -176.527, "gamma": 167.321, "delta": 79.435, "epsilon": 34.522, "zeta": 155.559, "epsilon_zeta": -121.036, "bb_type": "--", "chi": -172.842, "glyco_bond": "anti", "C5prime_xyz": [ -1.386, 8.484, 1.261 ], "P_xyz": [ -0.002, 10.351, 0.049 ], "form": ".", "ssZp": 3.142, "Dp": 3.234, "splay_angle": 27.715, "splay_distance": 4.614, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": -166.467, "theta": -143.156, "eta_prime": -158.810, "theta_prime": -147.066, "eta_base": -110.448, "theta_base": -123.837, "v0": 5.195, "v1": -27.421, "v2": 38.096, "v3": -36.082, "v4": 19.473, "amplitude": 38.818, "phase_angle": 11.069, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.359, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 226.909, 146.476, 213.188 ], "x_axis": [ 0.604, 0.049, 0.796 ], "y_axis": [ 0.094, -0.996, -0.010 ], "z_axis": [ 0.792, 0.081, -0.606 ], "quaternion": [ -0.026, 0.895, 0.040, 0.443 ] } }, { "index": 486, "index_chain": 486, "chain_name": "2", "nt_resnum": 562, "nt_name": "U", "nt_code": "U", "nt_id": "///2/562", "linked_nts": [ "///2/561", "///2/563" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": 10.937, "beta": -98.620, "gamma": -169.367, "delta": 80.077, "epsilon": -150.448, "zeta": -78.324, "epsilon_zeta": -72.124, "bb_type": "BI", "chi": -167.306, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.634, 0.953 ], "P_xyz": [ -0.624, 9.561, -1.380 ], "form": "A", "ssZp": 4.603, "Dp": 4.663, "splay_angle": 26.572, "splay_distance": 4.159, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 119.391, "theta": -173.972, "eta_prime": 162.872, "theta_prime": -179.125, "eta_base": -159.824, "theta_base": -162.291, "v0": 3.410, "v1": -25.947, "v2": 37.437, "v3": -36.425, "v4": 20.793, "amplitude": 38.516, "phase_angle": 13.594, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 230.425, 147.478, 210.374 ], "x_axis": [ 0.599, -0.365, 0.713 ], "y_axis": [ -0.166, -0.928, -0.335 ], "z_axis": [ 0.783, 0.082, -0.616 ], "quaternion": [ -0.117, 0.886, -0.150, 0.422 ] } }, { "index": 487, "index_chain": 487, "chain_name": "2", "nt_resnum": 563, "nt_name": "G", "nt_code": "G", "nt_id": "///2/563", "linked_nts": [ "///2/562", "///2/564" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -63.110, "beta": 160.573, "gamma": 67.330, "delta": 79.635, "epsilon": -145.678, "zeta": -71.430, "epsilon_zeta": -74.248, "bb_type": "BI", "chi": -177.145, "glyco_bond": "anti", "C5prime_xyz": [ -1.698, 8.538, 1.485 ], "P_xyz": [ 0.857, 9.116, 1.462 ], "form": "A", "ssZp": 4.684, "Dp": 4.674, "splay_angle": 29.013, "splay_distance": 4.443, "splay_ratio": 0.253, "d22": null, "d64": null, "eta": 173.094, "theta": -141.714, "eta_prime": -173.363, "theta_prime": -143.279, "eta_base": -141.214, "theta_base": -113.679, "v0": 1.949, "v1": -24.834, "v2": 36.990, "v3": -36.855, "v4": 21.986, "amplitude": 38.428, "phase_angle": 15.727, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.634, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 233.627, 149.676, 208.886 ], "x_axis": [ 0.488, -0.710, 0.508 ], "y_axis": [ -0.436, -0.702, -0.563 ], "z_axis": [ 0.756, 0.054, -0.652 ], "quaternion": [ -0.183, 0.843, -0.340, 0.375 ] } }, { "index": 488, "index_chain": 488, "chain_name": "2", "nt_resnum": 564, "nt_name": "A", "nt_code": "A", "nt_id": "///2/564", "linked_nts": [ "///2/563", "///2/565" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -72.652, "beta": -176.954, "gamma": 53.757, "delta": 79.691, "epsilon": -139.422, "zeta": -51.342, "epsilon_zeta": -88.080, "bb_type": "BI", "chi": 178.088, "glyco_bond": "anti", "C5prime_xyz": [ -1.574, 8.359, 1.752 ], "P_xyz": [ 0.843, 8.650, 2.729 ], "form": ".", "ssZp": 4.726, "Dp": 4.721, "splay_angle": 33.771, "splay_distance": 5.202, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 167.169, "theta": -119.480, "eta_prime": 177.788, "theta_prime": -114.903, "eta_base": -135.478, "theta_base": -64.458, "v0": 3.166, "v1": -25.732, "v2": 37.291, "v3": -36.442, "v4": 20.972, "amplitude": 38.425, "phase_angle": 13.954, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 237.954, 149.989, 207.931 ], "x_axis": [ -0.111, -0.970, 0.218 ], "y_axis": [ -0.777, -0.052, -0.627 ], "z_axis": [ 0.620, -0.239, -0.748 ], "quaternion": [ 0.149, -0.650, 0.672, -0.322 ] } }, { "index": 489, "index_chain": 489, "chain_name": "2", "nt_resnum": 565, "nt_name": "G", "nt_code": "G", "nt_id": "///2/565", "linked_nts": [ "///2/564", "///2/566" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -77.789, "beta": -176.165, "gamma": 56.988, "delta": 81.495, "epsilon": -157.419, "zeta": -77.812, "epsilon_zeta": -79.608, "bb_type": "BI", "chi": -168.612, "glyco_bond": "anti", "C5prime_xyz": [ -1.436, 8.678, 1.034 ], "P_xyz": [ 1.078, 9.083, 1.667 ], "form": "A", "ssZp": 4.524, "Dp": 4.558, "splay_angle": 24.489, "splay_distance": 3.868, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 159.703, "theta": -156.762, "eta_prime": -173.270, "theta_prime": -155.390, "eta_base": -97.744, "theta_base": -144.351, "v0": 2.124, "v1": -23.888, "v2": 35.342, "v3": -35.096, "v4": 20.789, "amplitude": 36.650, "phase_angle": 15.356, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.636, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 239.258, 145.340, 205.995 ], "x_axis": [ -0.782, -0.493, -0.381 ], "y_axis": [ -0.292, 0.830, -0.476 ], "z_axis": [ 0.551, -0.261, -0.793 ], "quaternion": [ 0.253, -0.213, 0.923, -0.200 ] } }, { "index": 490, "index_chain": 490, "chain_name": "2", "nt_resnum": 566, "nt_name": "U", "nt_code": "U", "nt_id": "///2/566", "linked_nts": [ "///2/565", "///2/567" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -64.139, "beta": 177.784, "gamma": 53.354, "delta": 81.828, "epsilon": -142.437, "zeta": -69.492, "epsilon_zeta": -72.945, "bb_type": "BI", "chi": -162.644, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.716, 0.689 ], "P_xyz": [ 1.096, 9.181, 1.147 ], "form": ".", "ssZp": 4.435, "Dp": 4.627, "splay_angle": 27.263, "splay_distance": 4.264, "splay_ratio": 0.236, "d22": 3.929, "d64": 3.930, "eta": 174.661, "theta": -135.926, "eta_prime": -178.775, "theta_prime": -132.053, "eta_base": -160.076, "theta_base": -85.670, "v0": 1.599, "v1": -23.299, "v2": 34.910, "v3": -34.961, "v4": 21.035, "amplitude": 36.343, "phase_angle": 16.143, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.920, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 242.272, 143.125, 205.012 ], "x_axis": [ -0.861, -0.113, -0.496 ], "y_axis": [ 0.063, 0.944, -0.324 ], "z_axis": [ 0.505, -0.310, -0.806 ], "quaternion": [ 0.263, -0.013, 0.950, -0.167 ] } }, { "index": 491, "index_chain": 491, "chain_name": "2", "nt_resnum": 567, "nt_name": "C", "nt_code": "C", "nt_id": "///2/567", "linked_nts": [ "///2/566", "///2/568" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.188, "beta": 163.467, "gamma": 57.061, "delta": 81.089, "epsilon": -156.867, "zeta": -67.436, "epsilon_zeta": -89.431, "bb_type": "BI", "chi": -160.960, "glyco_bond": "anti", "C5prime_xyz": [ -1.254, 8.738, 0.590 ], "P_xyz": [ 1.354, 8.975, 0.438 ], "form": ".", "ssZp": 4.458, "Dp": 4.594, "splay_angle": 43.536, "splay_distance": 7.701, "splay_ratio": 0.386, "d22": 6.883, "d64": 8.414, "eta": 163.650, "theta": -133.439, "eta_prime": -173.108, "theta_prime": -153.335, "eta_base": -106.900, "theta_base": -168.080, "v0": 3.268, "v1": -25.183, "v2": 36.338, "v3": -35.425, "v4": 20.294, "amplitude": 37.402, "phase_angle": 13.702, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.924, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 241.687, 141.995, 200.942 ], "x_axis": [ -0.544, 0.631, -0.554 ], "y_axis": [ 0.716, 0.693, 0.085 ], "z_axis": [ 0.437, -0.350, -0.828 ], "quaternion": [ 0.283, 0.385, 0.875, -0.076 ] } }, { "index": 492, "index_chain": 492, "chain_name": "2", "nt_resnum": 568, "nt_name": "C", "nt_code": "C", "nt_id": "///2/568", "linked_nts": [ "///2/567", "///2/569" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 169.141, "beta": 140.912, "gamma": -177.193, "delta": 80.333, "epsilon": -128.224, "zeta": -61.219, "epsilon_zeta": -67.005, "bb_type": "BI", "chi": -172.246, "glyco_bond": "anti", "C5prime_xyz": [ -1.267, 8.589, 1.254 ], "P_xyz": [ -0.899, 11.077, 0.514 ], "form": ".", "ssZp": 4.666, "Dp": 4.756, "splay_angle": 37.133, "splay_distance": 5.696, "splay_ratio": 0.319, "d22": null, "d64": null, "eta": 159.327, "theta": -166.475, "eta_prime": 155.987, "theta_prime": -148.292, "eta_base": 148.263, "theta_base": -91.083, "v0": 3.662, "v1": -25.958, "v2": 37.225, "v3": -36.090, "v4": 20.441, "amplitude": 38.238, "phase_angle": 13.218, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.874, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 243.247, 134.983, 198.166 ], "x_axis": [ -0.802, 0.574, -0.163 ], "y_axis": [ 0.556, 0.818, 0.145 ], "z_axis": [ 0.217, 0.026, -0.976 ], "quaternion": [ 0.100, 0.298, 0.948, 0.045 ] } }, { "index": 493, "index_chain": 493, "chain_name": "2", "nt_resnum": 569, "nt_name": "A", "nt_code": "A", "nt_id": "///2/569", "linked_nts": [ "///2/568", "///2/570" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop", "alpha": -58.152, "beta": 159.714, "gamma": 59.681, "delta": 79.454, "epsilon": -123.488, "zeta": -41.102, "epsilon_zeta": -82.385, "bb_type": "--", "chi": -171.938, "glyco_bond": "anti", "C5prime_xyz": [ -1.438, 8.573, 1.219 ], "P_xyz": [ 1.163, 8.911, 1.222 ], "form": ".", "ssZp": 4.636, "Dp": 4.760, "splay_angle": 28.126, "splay_distance": 5.028, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 167.300, "theta": -119.584, "eta_prime": -163.684, "theta_prime": -131.703, "eta_base": -91.446, "theta_base": -129.290, "v0": 2.982, "v1": -25.587, "v2": 37.305, "v3": -36.572, "v4": 21.156, "amplitude": 38.489, "phase_angle": 14.250, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.677, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 241.353, 138.720, 194.307 ], "x_axis": [ 0.079, 0.995, 0.067 ], "y_axis": [ 0.973, -0.092, 0.212 ], "z_axis": [ 0.217, 0.048, -0.975 ], "quaternion": [ 0.056, 0.732, 0.672, 0.097 ] } }, { "index": 494, "index_chain": 494, "chain_name": "2", "nt_resnum": 570, "nt_name": "C", "nt_code": "C", "nt_id": "///2/570", "linked_nts": [ "///2/569", "///2/571" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -112.341, "beta": 95.789, "gamma": 166.883, "delta": 82.078, "epsilon": -114.435, "zeta": -57.558, "epsilon_zeta": -56.877, "bb_type": "--", "chi": 164.621, "glyco_bond": "anti", "C5prime_xyz": [ -1.319, 7.874, 2.486 ], "P_xyz": [ -1.005, 10.394, 1.841 ], "form": ".", "ssZp": 4.748, "Dp": 4.798, "splay_angle": 36.675, "splay_distance": 5.482, "splay_ratio": 0.316, "d22": 3.486, "d64": 3.673, "eta": -169.871, "theta": -160.275, "eta_prime": -166.727, "theta_prime": -143.131, "eta_base": -143.749, "theta_base": -78.663, "v0": 6.868, "v1": -27.813, "v2": 37.138, "v3": -34.143, "v4": 17.215, "amplitude": 37.531, "phase_angle": 8.301, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.073, "filter_rmsd": 0.071, "frame": { "rmsd": 0.010, "origin": [ 239.343, 139.976, 189.871 ], "x_axis": [ 0.319, 0.939, 0.131 ], "y_axis": [ 0.891, -0.344, 0.295 ], "z_axis": [ 0.322, 0.023, -0.946 ], "quaternion": [ 0.084, 0.808, 0.566, 0.140 ] } }, { "index": 495, "index_chain": 495, "chain_name": "2", "nt_resnum": 571, "nt_name": "U", "nt_code": "U", "nt_id": "///2/571", "linked_nts": [ "///2/570", "///2/572" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -68.833, "beta": 173.464, "gamma": 50.333, "delta": 81.845, "epsilon": -146.870, "zeta": -71.512, "epsilon_zeta": -75.357, "bb_type": "BI", "chi": -172.985, "glyco_bond": "anti", "C5prime_xyz": [ -1.282, 8.486, 1.305 ], "P_xyz": [ 1.269, 8.649, 1.902 ], "form": "A", "ssZp": 4.659, "Dp": 4.676, "splay_angle": 24.796, "splay_distance": 3.852, "splay_ratio": 0.218, "d22": 4.229, "d64": 4.434, "eta": 148.795, "theta": -141.263, "eta_prime": -179.025, "theta_prime": -138.828, "eta_base": -93.777, "theta_base": -111.037, "v0": 4.879, "v1": -26.338, "v2": 36.631, "v3": -34.822, "v4": 18.884, "amplitude": 37.352, "phase_angle": 11.282, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.387, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 242.980, 143.249, 187.398 ], "x_axis": [ 0.920, 0.016, 0.392 ], "y_axis": [ -0.005, -0.999, 0.052 ], "z_axis": [ 0.392, -0.050, -0.919 ], "quaternion": [ 0.026, 0.979, 0.003, 0.200 ] } }, { "index": 496, "index_chain": 496, "chain_name": "2", "nt_resnum": 572, "nt_name": "U", "nt_code": "U", "nt_id": "///2/572", "linked_nts": [ "///2/571", "///2/573" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -63.007, "beta": 171.923, "gamma": 57.821, "delta": 82.455, "epsilon": -130.265, "zeta": -69.957, "epsilon_zeta": -60.307, "bb_type": "BI", "chi": -170.556, "glyco_bond": "anti", "C5prime_xyz": [ -1.457, 8.614, 1.147 ], "P_xyz": [ 1.100, 8.963, 1.617 ], "form": ".", "ssZp": 4.550, "Dp": 4.664, "splay_angle": 32.820, "splay_distance": 5.083, "splay_ratio": 0.283, "d22": 4.003, "d64": 4.099, "eta": 175.794, "theta": -125.377, "eta_prime": -170.550, "theta_prime": -120.592, "eta_base": -129.126, "theta_base": -73.285, "v0": 1.503, "v1": -22.934, "v2": 34.397, "v3": -34.477, "v4": 20.808, "amplitude": 35.828, "phase_angle": 16.246, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 245.303, 144.713, 184.696 ], "x_axis": [ 0.718, -0.565, 0.407 ], "y_axis": [ -0.550, -0.818, -0.166 ], "z_axis": [ 0.426, -0.105, -0.898 ], "quaternion": [ -0.016, 0.927, -0.301, 0.225 ] } }, { "index": 497, "index_chain": 497, "chain_name": "2", "nt_resnum": 573, "nt_name": "U", "nt_code": "U", "nt_id": "///2/573", "linked_nts": [ "///2/572", "///2/574" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": -58.514, "beta": 162.359, "gamma": 54.974, "delta": 81.536, "epsilon": -125.323, "zeta": -86.822, "epsilon_zeta": -38.501, "bb_type": "--", "chi": -162.112, "glyco_bond": "anti", "C5prime_xyz": [ -1.309, 8.660, 0.664 ], "P_xyz": [ 1.302, 8.888, 0.574 ], "form": ".", "ssZp": 4.409, "Dp": 4.755, "splay_angle": 69.500, "splay_distance": 10.345, "splay_ratio": 0.570, "d22": null, "d64": null, "eta": 167.281, "theta": -111.449, "eta_prime": -169.259, "theta_prime": -152.082, "eta_base": -103.179, "theta_base": 148.668, "v0": 3.966, "v1": -25.673, "v2": 36.432, "v3": -35.138, "v4": 19.668, "amplitude": 37.339, "phase_angle": 12.650, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.773, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 248.756, 141.678, 182.529 ], "x_axis": [ -0.067, -0.990, 0.124 ], "y_axis": [ -0.889, 0.002, -0.458 ], "z_axis": [ 0.453, -0.141, -0.880 ], "quaternion": [ 0.118, -0.673, 0.698, -0.214 ] } }, { "index": 498, "index_chain": 498, "chain_name": "2", "nt_resnum": 574, "nt_name": "A", "nt_code": "A", "nt_id": "///2/574", "linked_nts": [ "///2/573", "///2/575" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor", "alpha": 169.518, "beta": 178.027, "gamma": 46.633, "delta": 81.196, "epsilon": -124.967, "zeta": -79.547, "epsilon_zeta": -45.420, "bb_type": "--", "chi": 166.174, "glyco_bond": "anti", "C5prime_xyz": [ -1.948, 8.123, 2.305 ], "P_xyz": [ 0.094, 8.178, 3.946 ], "form": "A", "ssZp": 4.485, "Dp": 4.621, "splay_angle": 23.091, "splay_distance": 3.584, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 28.860, "theta": -133.907, "eta_prime": 50.276, "theta_prime": -128.319, "eta_base": 29.511, "theta_base": -87.526, "v0": -0.864, "v1": -21.159, "v2": 33.791, "v3": -35.249, "v4": 22.782, "amplitude": 35.946, "phase_angle": 19.943, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.621, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 249.738, 150.419, 177.086 ], "x_axis": [ -0.757, 0.638, -0.143 ], "y_axis": [ -0.425, -0.647, -0.633 ], "z_axis": [ -0.496, -0.419, 0.761 ], "quaternion": [ 0.299, -0.180, -0.296, 0.889 ] } }, { "index": 499, "index_chain": 499, "chain_name": "2", "nt_resnum": 575, "nt_name": "A", "nt_code": "A", "nt_id": "///2/575", "linked_nts": [ "///2/574", "///2/576" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -69.625, "beta": 173.851, "gamma": 50.533, "delta": 83.662, "epsilon": -157.671, "zeta": -65.704, "epsilon_zeta": -91.967, "bb_type": "BI", "chi": -165.636, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.637, 0.895 ], "P_xyz": [ 1.163, 8.929, 1.499 ], "form": ".", "ssZp": 4.419, "Dp": 4.506, "splay_angle": 22.700, "splay_distance": 3.995, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 156.384, "theta": -113.147, "eta_prime": 174.555, "theta_prime": -124.129, "eta_base": -129.599, "theta_base": -94.701, "v0": 2.467, "v1": -23.191, "v2": 33.926, "v3": -33.469, "v4": 19.584, "amplitude": 35.074, "phase_angle": 14.702, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.665, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 247.833, 150.676, 180.112 ], "x_axis": [ -0.789, -0.003, -0.615 ], "y_axis": [ 0.264, -0.905, -0.334 ], "z_axis": [ -0.555, -0.426, 0.714 ], "quaternion": [ -0.073, -0.317, -0.206, 0.923 ] } }, { "index": 500, "index_chain": 500, "chain_name": "2", "nt_resnum": 576, "nt_name": "A", "nt_code": "A", "nt_id": "///2/576", "linked_nts": [ "///2/575", "///2/577" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,phosphate", "alpha": 153.418, "beta": -165.399, "gamma": 172.801, "delta": 81.089, "epsilon": -137.690, "zeta": -82.690, "epsilon_zeta": -55.001, "bb_type": "BI", "chi": -176.792, "glyco_bond": "anti", "C5prime_xyz": [ -1.393, 8.427, 1.509 ], "P_xyz": [ 0.210, 10.218, 0.469 ], "form": "A", "ssZp": 4.702, "Dp": 4.715, "splay_angle": 24.461, "splay_distance": 3.797, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 155.602, "theta": -169.570, "eta_prime": 177.161, "theta_prime": -164.565, "eta_base": -127.353, "theta_base": -134.991, "v0": 4.025, "v1": -25.718, "v2": 36.485, "v3": -35.181, "v4": 19.652, "amplitude": 37.384, "phase_angle": 12.595, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.894, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 244.006, 150.775, 181.252 ], "x_axis": [ -0.449, -0.524, -0.723 ], "y_axis": [ 0.620, -0.766, 0.170 ], "z_axis": [ -0.644, -0.372, 0.669 ], "quaternion": [ -0.337, -0.402, -0.059, 0.849 ] } }, { "index": 501, "index_chain": 501, "chain_name": "2", "nt_resnum": 577, "nt_name": "U", "nt_code": "U", "nt_id": "///2/577", "linked_nts": [ "///2/576", "///2/578" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -52.580, "beta": 164.450, "gamma": 50.936, "delta": 80.213, "epsilon": -136.246, "zeta": -63.163, "epsilon_zeta": -73.082, "bb_type": "BI", "chi": -168.021, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.639, 1.000 ], "P_xyz": [ 1.138, 8.999, 1.274 ], "form": ".", "ssZp": 4.592, "Dp": 4.711, "splay_angle": 45.793, "splay_distance": 6.775, "splay_ratio": 0.389, "d22": 3.616, "d64": 4.319, "eta": 171.959, "theta": -125.131, "eta_prime": -175.381, "theta_prime": -120.769, "eta_base": -136.507, "theta_base": -80.683, "v0": 2.563, "v1": -24.973, "v2": 36.659, "v3": -36.175, "v4": 21.192, "amplitude": 37.918, "phase_angle": 14.810, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.770, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 240.456, 150.510, 182.576 ], "x_axis": [ -0.020, -0.857, -0.514 ], "y_axis": [ 0.752, -0.352, 0.557 ], "z_axis": [ -0.658, -0.375, 0.652 ], "quaternion": [ 0.566, 0.412, -0.064, -0.711 ] } }, { "index": 502, "index_chain": 502, "chain_name": "2", "nt_resnum": 578, "nt_name": "C", "nt_code": "C", "nt_id": "///2/578", "linked_nts": [ "///2/577", "///2/579" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -60.137, "beta": 177.255, "gamma": 51.726, "delta": 80.510, "epsilon": -135.076, "zeta": -68.629, "epsilon_zeta": -66.448, "bb_type": "BI", "chi": 172.310, "glyco_bond": "--", "C5prime_xyz": [ -1.229, 8.142, 2.107 ], "P_xyz": [ 1.204, 7.941, 3.075 ], "form": "A", "ssZp": 4.755, "Dp": 4.767, "splay_angle": 28.142, "splay_distance": 4.329, "splay_ratio": 0.249, "d22": 4.374, "d64": 4.698, "eta": 170.883, "theta": -131.113, "eta_prime": -167.707, "theta_prime": -127.164, "eta_base": -105.584, "theta_base": -95.868, "v0": 6.562, "v1": -28.391, "v2": 38.347, "v3": -35.553, "v4": 18.264, "amplitude": 38.834, "phase_angle": 9.081, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.880, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 238.128, 144.623, 184.990 ], "x_axis": [ 0.843, -0.534, -0.068 ], "y_axis": [ 0.512, 0.757, 0.405 ], "z_axis": [ -0.165, -0.376, 0.912 ], "quaternion": [ 0.937, 0.208, -0.026, -0.279 ] } }, { "index": 503, "index_chain": 503, "chain_name": "2", "nt_resnum": 579, "nt_name": "C", "nt_code": "C", "nt_id": "///2/579", "linked_nts": [ "///2/578", "///2/580" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -63.148, "beta": -179.188, "gamma": 51.172, "delta": 79.709, "epsilon": -143.469, "zeta": -68.782, "epsilon_zeta": -74.687, "bb_type": "BI", "chi": -175.384, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.555, 1.424 ], "P_xyz": [ 1.165, 8.817, 2.256 ], "form": "A", "ssZp": 4.695, "Dp": 4.694, "splay_angle": 25.857, "splay_distance": 3.997, "splay_ratio": 0.226, "d22": 3.953, "d64": 4.177, "eta": 168.666, "theta": -139.575, "eta_prime": -175.172, "theta_prime": -135.242, "eta_base": -125.736, "theta_base": -98.711, "v0": 3.107, "v1": -25.564, "v2": 37.081, "v3": -36.298, "v4": 20.916, "amplitude": 38.223, "phase_angle": 14.042, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.883, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 237.970, 141.036, 187.409 ], "x_axis": [ 0.978, 0.130, 0.161 ], "y_axis": [ -0.166, 0.956, 0.241 ], "z_axis": [ -0.123, -0.263, 0.957 ], "quaternion": [ 0.986, 0.128, -0.072, 0.075 ] } }, { "index": 504, "index_chain": 504, "chain_name": "2", "nt_resnum": 580, "nt_name": "U", "nt_code": "U", "nt_id": "///2/580", "linked_nts": [ "///2/579", "///2/581" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -65.588, "beta": 170.876, "gamma": 58.911, "delta": 81.263, "epsilon": -151.843, "zeta": -58.741, "epsilon_zeta": -93.102, "bb_type": "BI", "chi": -174.424, "glyco_bond": "anti", "C5prime_xyz": [ -1.480, 8.545, 1.361 ], "P_xyz": [ 1.078, 8.883, 1.838 ], "form": "A", "ssZp": 4.572, "Dp": 4.601, "splay_angle": 23.650, "splay_distance": 3.891, "splay_ratio": 0.214, "d22": 4.310, "d64": 4.477, "eta": 167.389, "theta": -133.462, "eta_prime": -173.663, "theta_prime": -133.732, "eta_base": -119.023, "theta_base": -105.952, "v0": 2.428, "v1": -24.486, "v2": 35.977, "v3": -35.560, "v4": 20.888, "amplitude": 37.235, "phase_angle": 14.935, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.935, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 239.449, 139.227, 190.652 ], "x_axis": [ 0.645, 0.736, 0.206 ], "y_axis": [ -0.756, 0.654, 0.029 ], "z_axis": [ -0.113, -0.175, 0.978 ], "quaternion": [ 0.905, 0.056, -0.088, 0.412 ] } }, { "index": 505, "index_chain": 505, "chain_name": "2", "nt_resnum": 581, "nt_name": "U", "nt_code": "U", "nt_id": "///2/581", "linked_nts": [ "///2/580", "///2/582" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,phosphate", "alpha": -73.573, "beta": -171.548, "gamma": 52.447, "delta": 80.458, "epsilon": -140.342, "zeta": -84.849, "epsilon_zeta": -55.493, "bb_type": "BI", "chi": -158.914, "glyco_bond": "anti", "C5prime_xyz": [ -1.621, 8.821, 0.439 ], "P_xyz": [ 0.800, 9.572, 1.113 ], "form": ".", "ssZp": 4.285, "Dp": 4.580, "splay_angle": 25.672, "splay_distance": 4.061, "splay_ratio": 0.222, "d22": 4.392, "d64": 4.257, "eta": 170.032, "theta": -150.410, "eta_prime": -175.290, "theta_prime": -144.344, "eta_base": -131.934, "theta_base": -105.543, "v0": -1.594, "v1": -20.727, "v2": 33.869, "v3": -35.752, "v4": 23.565, "amplitude": 36.299, "phase_angle": 21.082, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.800, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 241.455, 138.689, 193.943 ], "x_axis": [ 0.049, 0.994, 0.095 ], "y_axis": [ -0.997, 0.054, -0.058 ], "z_axis": [ -0.062, -0.092, 0.994 ], "quaternion": [ 0.724, 0.012, -0.054, 0.687 ] } }, { "index": 506, "index_chain": 506, "chain_name": "2", "nt_resnum": 582, "nt_name": "U", "nt_code": "U", "nt_id": "///2/582", "linked_nts": [ "///2/581", "///2/583" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -53.463, "beta": 155.177, "gamma": 56.226, "delta": 81.374, "epsilon": -129.097, "zeta": -101.192, "epsilon_zeta": -27.905, "bb_type": "--", "chi": -157.784, "glyco_bond": "anti", "C5prime_xyz": [ -1.379, 8.724, 0.393 ], "P_xyz": [ 1.203, 8.949, 0.019 ], "form": ".", "ssZp": 4.276, "Dp": 4.724, "splay_angle": 34.360, "splay_distance": 6.295, "splay_ratio": 0.309, "d22": null, "d64": null, "eta": 172.539, "theta": -136.169, "eta_prime": -172.979, "theta_prime": -155.456, "eta_base": -125.457, "theta_base": -173.286, "v0": 2.772, "v1": -24.649, "v2": 35.934, "v3": -35.315, "v4": 20.536, "amplitude": 37.103, "phase_angle": 14.417, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.702, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 241.505, 139.801, 197.848 ], "x_axis": [ -0.572, 0.820, 0.019 ], "y_axis": [ -0.820, -0.571, -0.046 ], "z_axis": [ -0.027, -0.042, 0.999 ], "quaternion": [ 0.463, -0.002, -0.025, 0.886 ] } }, { "index": 507, "index_chain": 507, "chain_name": "2", "nt_resnum": 583, "nt_name": "A", "nt_code": "A", "nt_id": "///2/583", "linked_nts": [ "///2/582", "///2/584" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 68.430, "beta": -133.916, "gamma": -110.275, "delta": 82.034, "epsilon": -123.697, "zeta": -59.915, "epsilon_zeta": -63.782, "bb_type": "--", "chi": -177.113, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.411, 1.528 ], "P_xyz": [ -1.297, 11.011, 1.211 ], "form": ".", "ssZp": 4.711, "Dp": 4.753, "splay_angle": 35.509, "splay_distance": 5.545, "splay_ratio": 0.307, "d22": null, "d64": null, "eta": 174.590, "theta": -164.737, "eta_prime": 168.570, "theta_prime": -149.295, "eta_base": 162.839, "theta_base": -92.811, "v0": 4.102, "v1": -25.444, "v2": 35.925, "v3": -34.571, "v4": 19.240, "amplitude": 36.780, "phase_angle": 12.379, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 245.912, 139.037, 202.277 ], "x_axis": [ -0.401, 0.891, -0.215 ], "y_axis": [ -0.880, -0.439, -0.182 ], "z_axis": [ -0.257, 0.116, 0.960 ], "quaternion": [ 0.529, -0.141, -0.020, 0.837 ] } }, { "index": 508, "index_chain": 508, "chain_name": "2", "nt_resnum": 584, "nt_name": "A", "nt_code": "A", "nt_id": "///2/584", "linked_nts": [ "///2/583", "///2/585" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -65.796, "beta": -177.428, "gamma": 42.106, "delta": 81.342, "epsilon": -146.797, "zeta": -34.345, "epsilon_zeta": -112.453, "bb_type": "BI", "chi": -171.489, "glyco_bond": "anti", "C5prime_xyz": [ -1.512, 8.596, 1.206 ], "P_xyz": [ 0.812, 9.021, 2.344 ], "form": ".", "ssZp": 4.561, "Dp": 4.603, "splay_angle": 24.558, "splay_distance": 4.502, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 154.555, "theta": -120.916, "eta_prime": 178.949, "theta_prime": -131.610, "eta_base": -112.912, "theta_base": -117.991, "v0": 1.199, "v1": -22.963, "v2": 34.785, "v3": -35.074, "v4": 21.363, "amplitude": 36.332, "phase_angle": 16.776, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.533, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 242.543, 142.743, 204.656 ], "x_axis": [ -0.731, -0.020, -0.682 ], "y_axis": [ -0.021, -0.998, 0.052 ], "z_axis": [ -0.682, 0.052, 0.730 ], "quaternion": [ 0.000, -0.367, 0.028, 0.930 ] } }, { "index": 509, "index_chain": 509, "chain_name": "2", "nt_resnum": 585, "nt_name": "C", "nt_code": "C", "nt_id": "///2/585", "linked_nts": [ "///2/584", "///2/586" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -147.218, "beta": 120.769, "gamma": 158.164, "delta": 82.175, "epsilon": -129.451, "zeta": -52.056, "epsilon_zeta": -77.395, "bb_type": "BI", "chi": 174.744, "glyco_bond": "anti", "C5prime_xyz": [ -1.242, 8.223, 1.988 ], "P_xyz": [ -0.454, 10.542, 1.056 ], "form": ".", "ssZp": 4.732, "Dp": 4.749, "splay_angle": 34.022, "splay_distance": 5.204, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 171.370, "theta": -155.953, "eta_prime": -179.619, "theta_prime": -142.680, "eta_base": -148.222, "theta_base": -81.594, "v0": 5.687, "v1": -26.788, "v2": 36.588, "v3": -34.302, "v4": 18.053, "amplitude": 37.154, "phase_angle": 10.012, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.010, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 239.640, 145.825, 206.187 ], "x_axis": [ -0.662, -0.409, -0.629 ], "y_axis": [ 0.250, -0.911, 0.329 ], "z_axis": [ -0.707, 0.060, 0.705 ], "quaternion": [ -0.182, -0.369, 0.108, 0.905 ] } }, { "index": 510, "index_chain": 510, "chain_name": "2", "nt_resnum": 586, "nt_name": "G", "nt_code": "G", "nt_id": "///2/586", "linked_nts": [ "///2/585", "///2/587" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -68.740, "beta": 176.103, "gamma": 48.585, "delta": 80.505, "epsilon": -133.038, "zeta": -117.631, "epsilon_zeta": -15.407, "bb_type": "--", "chi": -170.305, "glyco_bond": "anti", "C5prime_xyz": [ -1.323, 8.613, 1.141 ], "P_xyz": [ 1.208, 8.902, 1.777 ], "form": ".", "ssZp": 4.638, "Dp": 4.738, "splay_angle": 61.463, "splay_distance": 9.301, "splay_ratio": 0.512, "d22": null, "d64": null, "eta": 156.333, "theta": 166.665, "eta_prime": -175.077, "theta_prime": -162.572, "eta_base": -94.249, "theta_base": -179.557, "v0": 3.786, "v1": -25.790, "v2": 36.848, "v3": -35.668, "v4": 20.094, "amplitude": 37.818, "phase_angle": 13.002, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.626, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 235.000, 143.473, 206.332 ], "x_axis": [ -0.026, -0.999, -0.020 ], "y_axis": [ 0.721, -0.032, 0.692 ], "z_axis": [ -0.692, 0.004, 0.722 ], "quaternion": [ 0.645, 0.267, -0.261, -0.667 ] } }, { "index": 511, "index_chain": 511, "chain_name": "2", "nt_resnum": 587, "nt_name": "A", "nt_code": "A", "nt_id": "///2/587", "linked_nts": [ "///2/586", "///2/588" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.787, "beta": -142.472, "gamma": 44.631, "delta": 144.729, "epsilon": -101.310, "zeta": -166.643, "epsilon_zeta": 65.333, "bb_type": "BII", "chi": -64.126, "glyco_bond": "--", "C5prime_xyz": [ -3.375, 6.660, -3.055 ], "P_xyz": [ -1.619, 8.275, -4.139 ], "form": ".", "ssZp": 0.302, "Dp": 1.014, "splay_angle": 66.504, "splay_distance": 10.223, "splay_ratio": 0.559, "d22": null, "d64": null, "eta": -129.460, "theta": -147.768, "eta_prime": -149.778, "theta_prime": -157.839, "eta_base": 169.283, "theta_base": -102.157, "v0": -22.476, "v1": 35.588, "v2": -34.420, "v3": 22.347, "v4": -0.129, "amplitude": 36.310, "phase_angle": 161.430, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.053, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 230.163, 150.667, 209.702 ], "x_axis": [ -0.386, -0.760, -0.523 ], "y_axis": [ 0.292, -0.638, 0.712 ], "z_axis": [ -0.875, 0.122, 0.469 ], "quaternion": [ -0.333, -0.443, 0.264, 0.789 ] } }, { "index": 512, "index_chain": 512, "chain_name": "2", "nt_resnum": 588, "nt_name": "G", "nt_code": "G", "nt_id": "///2/588", "linked_nts": [ "///2/587", "///2/589" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart", "alpha": 42.956, "beta": -143.478, "gamma": -97.439, "delta": 149.502, "epsilon": -129.798, "zeta": -151.936, "epsilon_zeta": 22.138, "bb_type": "--", "chi": 49.340, "glyco_bond": "syn", "C5prime_xyz": [ -5.335, 3.648, 0.601 ], "P_xyz": [ -7.301, 2.506, 1.899 ], "form": ".", "ssZp": -1.464, "Dp": 1.475, "splay_angle": 146.498, "splay_distance": 16.886, "splay_ratio": 0.958, "d22": null, "d64": null, "eta": -138.485, "theta": 158.015, "eta_prime": -147.030, "theta_prime": 131.456, "eta_base": -111.030, "theta_base": 67.340, "v0": -19.275, "v1": 34.765, "v2": -36.111, "v3": 25.956, "v4": -4.396, "amplitude": 36.922, "phase_angle": 167.968, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 227.642, 145.563, 218.193 ], "x_axis": [ -0.961, -0.114, -0.250 ], "y_axis": [ -0.184, 0.943, 0.276 ], "z_axis": [ 0.205, 0.311, -0.928 ], "quaternion": [ 0.116, -0.076, 0.979, 0.150 ] } }, { "index": 513, "index_chain": 513, "chain_name": "2", "nt_resnum": 589, "nt_name": "G", "nt_code": "G", "nt_id": "///2/589", "linked_nts": [ "///2/588", "///2/590" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 49.716, "beta": -141.237, "gamma": 80.579, "delta": 83.685, "epsilon": -178.516, "zeta": 40.802, "epsilon_zeta": 140.681, "bb_type": "--", "chi": -78.173, "glyco_bond": "--", "C5prime_xyz": [ -2.685, 6.744, -3.299 ], "P_xyz": [ -0.550, 6.028, -4.647 ], "form": ".", "ssZp": -0.052, "Dp": 4.370, "splay_angle": 125.005, "splay_distance": 16.718, "splay_ratio": 0.888, "d22": null, "d64": null, "eta": -5.661, "theta": -31.971, "eta_prime": 2.021, "theta_prime": -54.700, "eta_base": 46.252, "theta_base": -103.764, "v0": 3.661, "v1": -24.344, "v2": 34.573, "v3": -33.421, "v4": 18.819, "amplitude": 35.458, "phase_angle": 12.831, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4d", "suiteness": 0.088, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 234.426, 160.325, 222.799 ], "x_axis": [ 0.665, -0.239, -0.707 ], "y_axis": [ -0.673, -0.603, -0.429 ], "z_axis": [ -0.323, 0.761, -0.562 ], "quaternion": [ -0.354, 0.841, -0.271, -0.306 ] } }, { "index": 514, "index_chain": 514, "chain_name": "2", "nt_resnum": 590, "nt_name": "A", "nt_code": "A", "nt_id": "///2/590", "linked_nts": [ "///2/589", "///2/591" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": -172.510, "beta": -156.396, "gamma": -156.193, "delta": 80.009, "epsilon": -111.744, "zeta": 150.263, "epsilon_zeta": 97.993, "bb_type": "BII", "chi": 72.528, "glyco_bond": "syn", "C5prime_xyz": [ -5.027, 4.498, 2.309 ], "P_xyz": [ -5.461, 4.955, 4.853 ], "form": ".", "ssZp": -0.895, "Dp": 4.576, "splay_angle": 170.145, "splay_distance": 18.434, "splay_ratio": 0.996, "d22": null, "d64": null, "eta": -98.294, "theta": 100.690, "eta_prime": -62.564, "theta_prime": 94.217, "eta_base": -13.748, "theta_base": -103.352, "v0": -3.141, "v1": -19.786, "v2": 33.831, "v3": -36.599, "v4": 25.039, "amplitude": 36.854, "phase_angle": 23.370, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 226.218, 151.191, 211.454 ], "x_axis": [ -0.227, -0.940, -0.256 ], "y_axis": [ 0.616, -0.342, 0.709 ], "z_axis": [ -0.754, 0.003, 0.657 ], "quaternion": [ 0.522, 0.339, -0.239, -0.746 ] } }, { "index": 515, "index_chain": 515, "chain_name": "2", "nt_resnum": 591, "nt_name": "U", "nt_code": "U", "nt_id": "///2/591", "linked_nts": [ "///2/590", "///2/592" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 17.625, "beta": 108.305, "gamma": -163.455, "delta": 146.685, "epsilon": -104.179, "zeta": 109.922, "epsilon_zeta": 145.899, "bb_type": "--", "chi": -122.337, "glyco_bond": "anti", "C5prime_xyz": [ -1.977, 8.554, -1.090 ], "P_xyz": [ -2.442, 10.201, -3.073 ], "form": ".", "ssZp": 1.014, "Dp": 1.036, "splay_angle": 150.490, "splay_distance": 18.740, "splay_ratio": 0.967, "d22": 11.871, "d64": 14.978, "eta": 76.177, "theta": 68.385, "eta_prime": 50.505, "theta_prime": 50.804, "eta_base": -139.128, "theta_base": 34.959, "v0": -21.592, "v1": 35.711, "v2": -35.438, "v3": 23.870, "v4": -1.626, "amplitude": 36.914, "phase_angle": 163.742, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 235.376, 165.316, 218.967 ], "x_axis": [ -0.615, 0.281, 0.737 ], "y_axis": [ -0.435, -0.900, -0.020 ], "z_axis": [ 0.658, -0.333, 0.676 ], "quaternion": [ 0.200, 0.390, -0.099, 0.893 ] } }, { "index": 516, "index_chain": 516, "chain_name": "2", "nt_resnum": 592, "nt_name": "C", "nt_code": "C", "nt_id": "///2/592", "linked_nts": [ "///2/591", "///2/593" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart", "alpha": 52.191, "beta": -178.872, "gamma": 66.509, "delta": 148.515, "epsilon": -92.156, "zeta": -49.750, "epsilon_zeta": -42.406, "bb_type": "--", "chi": -153.607, "glyco_bond": "anti", "C5prime_xyz": [ -1.995, 8.715, 0.606 ], "P_xyz": [ 0.106, 9.020, 2.158 ], "form": ".", "ssZp": 0.561, "Dp": 0.685, "splay_angle": 138.465, "splay_distance": 17.791, "splay_ratio": 0.935, "d22": 10.329, "d64": 12.886, "eta": 7.842, "theta": -23.962, "eta_prime": 17.807, "theta_prime": -42.655, "eta_base": 26.180, "theta_base": -17.316, "v0": -22.068, "v1": 36.783, "v2": -36.560, "v3": 24.800, "v4": -1.927, "amplitude": 38.020, "phase_angle": 164.066, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.523, "filter_rmsd": 0.060, "frame": { "rmsd": 0.004, "origin": [ 233.293, 149.421, 209.260 ], "x_axis": [ 0.533, -0.673, 0.514 ], "y_axis": [ 0.482, 0.740, 0.469 ], "z_axis": [ -0.696, -0.002, 0.718 ], "quaternion": [ 0.865, 0.136, -0.350, -0.334 ] } }, { "index": 517, "index_chain": 517, "chain_name": "2", "nt_resnum": 593, "nt_name": "C", "nt_code": "C", "nt_id": "///2/593", "linked_nts": [ "///2/592", "///2/594" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -76.264, "beta": -161.845, "gamma": 82.401, "delta": 82.987, "epsilon": -106.513, "zeta": -83.549, "epsilon_zeta": -22.964, "bb_type": "--", "chi": -150.052, "glyco_bond": "anti", "C5prime_xyz": [ -1.309, 8.783, -0.076 ], "P_xyz": [ 1.283, 8.984, -0.444 ], "form": ".", "ssZp": 3.682, "Dp": 4.717, "splay_angle": 149.843, "splay_distance": 18.533, "splay_ratio": 0.966, "d22": null, "d64": null, "eta": -170.768, "theta": -88.195, "eta_prime": -130.455, "theta_prime": -136.262, "eta_base": -123.674, "theta_base": -126.294, "v0": 2.414, "v1": -23.945, "v2": 35.126, "v3": -34.686, "v4": 20.381, "amplitude": 36.343, "phase_angle": 14.872, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.043, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 234.388, 165.688, 216.380 ], "x_axis": [ 0.856, 0.140, -0.498 ], "y_axis": [ -0.274, -0.693, -0.667 ], "z_axis": [ -0.438, 0.708, -0.554 ], "quaternion": [ -0.390, 0.881, -0.038, -0.266 ] } }, { "index": 518, "index_chain": 518, "chain_name": "2", "nt_resnum": 594, "nt_name": "A", "nt_code": "A", "nt_id": "///2/594", "linked_nts": [ "///2/593", "///2/595" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,splayed-apart", "alpha": 157.551, "beta": 129.427, "gamma": 4.601, "delta": 146.722, "epsilon": -89.501, "zeta": 119.201, "epsilon_zeta": 151.298, "bb_type": "--", "chi": -119.053, "glyco_bond": "anti", "C5prime_xyz": [ -2.109, 8.509, -1.250 ], "P_xyz": [ -0.123, 9.481, 0.162 ], "form": ".", "ssZp": 0.630, "Dp": 0.659, "splay_angle": 39.286, "splay_distance": 6.573, "splay_ratio": 0.338, "d22": null, "d64": null, "eta": -54.992, "theta": -178.785, "eta_prime": 4.606, "theta_prime": 164.784, "eta_base": -22.235, "theta_base": -155.302, "v0": -22.294, "v1": 36.408, "v2": -35.814, "v3": 23.877, "v4": -1.188, "amplitude": 37.444, "phase_angle": 163.030, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 223.364, 163.078, 201.713 ], "x_axis": [ 0.011, -0.986, -0.166 ], "y_axis": [ 0.567, -0.130, 0.813 ], "z_axis": [ -0.823, -0.103, 0.558 ], "quaternion": [ 0.600, 0.382, -0.274, -0.648 ] } }, { "index": 519, "index_chain": 519, "chain_name": "2", "nt_resnum": 595, "nt_name": "U", "nt_code": "U", "nt_id": "///2/595", "linked_nts": [ "///2/594", "///2/596" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": 88.535, "beta": -114.171, "gamma": 175.858, "delta": 83.800, "epsilon": -151.108, "zeta": -54.478, "epsilon_zeta": -96.630, "bb_type": "BI", "chi": -178.563, "glyco_bond": "anti", "C5prime_xyz": [ -1.576, 8.480, 1.592 ], "P_xyz": [ 0.309, 9.409, 0.022 ], "form": "A", "ssZp": 4.426, "Dp": 4.501, "splay_angle": 26.722, "splay_distance": 4.254, "splay_ratio": 0.235, "d22": 4.837, "d64": 4.563, "eta": -177.838, "theta": -136.760, "eta_prime": -171.659, "theta_prime": -144.259, "eta_base": -123.070, "theta_base": -112.333, "v0": 0.635, "v1": -21.538, "v2": 32.999, "v3": -33.565, "v4": 20.784, "amplitude": 34.615, "phase_angle": 17.579, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.699, "filter_rmsd": 0.108, "frame": { "rmsd": 0.007, "origin": [ 220.230, 168.602, 203.409 ], "x_axis": [ -0.612, -0.332, 0.718 ], "y_axis": [ 0.774, -0.061, 0.631 ], "z_axis": [ -0.166, 0.941, 0.294 ], "quaternion": [ -0.394, 0.197, 0.561, 0.701 ] } }, { "index": 520, "index_chain": 520, "chain_name": "2", "nt_resnum": 596, "nt_name": "U", "nt_code": "U", "nt_id": "///2/596", "linked_nts": [ "///2/595", "///2/597" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -84.350, "beta": -156.877, "gamma": 50.654, "delta": 84.251, "epsilon": -169.643, "zeta": -86.798, "epsilon_zeta": -82.845, "bb_type": "BI", "chi": -142.184, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.727, -0.503 ], "P_xyz": [ 1.062, 9.385, 0.080 ], "form": ".", "ssZp": 3.814, "Dp": 4.350, "splay_angle": 25.111, "splay_distance": 4.096, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 165.005, "theta": -135.907, "eta_prime": -175.808, "theta_prime": -139.092, "eta_base": -126.135, "theta_base": -107.796, "v0": 1.314, "v1": -21.631, "v2": 32.592, "v3": -32.770, "v4": 19.878, "amplitude": 33.991, "phase_angle": 16.495, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.432, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 217.679, 171.525, 205.155 ], "x_axis": [ 0.142, -0.311, 0.940 ], "y_axis": [ 0.962, 0.267, -0.057 ], "z_axis": [ -0.233, 0.912, 0.337 ], "quaternion": [ 0.661, -0.367, -0.444, -0.482 ] } }, { "index": 521, "index_chain": 521, "chain_name": "2", "nt_resnum": 597, "nt_name": "G", "nt_code": "G", "nt_id": "///2/597", "linked_nts": [ "///2/596", "///2/598" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": 160.933, "beta": -139.409, "gamma": 157.715, "delta": 81.448, "epsilon": -156.758, "zeta": -73.336, "epsilon_zeta": -83.422, "bb_type": "BI", "chi": -171.211, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.590, 1.196 ], "P_xyz": [ 0.664, 9.432, -0.218 ], "form": ".", "ssZp": 4.565, "Dp": 4.588, "splay_angle": 22.775, "splay_distance": 4.085, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 154.634, "theta": -127.479, "eta_prime": 179.041, "theta_prime": -144.208, "eta_base": -130.223, "theta_base": -127.241, "v0": 3.549, "v1": -25.185, "v2": 36.068, "v3": -35.020, "v4": 19.872, "amplitude": 37.056, "phase_angle": 13.260, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.224, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 216.799, 174.388, 207.949 ], "x_axis": [ 0.667, -0.245, 0.704 ], "y_axis": [ 0.726, 0.427, -0.539 ], "z_axis": [ -0.168, 0.870, 0.463 ], "quaternion": [ 0.799, -0.441, -0.273, -0.304 ] } }, { "index": 522, "index_chain": 522, "chain_name": "2", "nt_resnum": 598, "nt_name": "G", "nt_code": "G", "nt_id": "///2/598", "linked_nts": [ "///2/597", "///2/599" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": 161.985, "beta": -161.502, "gamma": 173.175, "delta": 81.648, "epsilon": -137.546, "zeta": -81.119, "epsilon_zeta": -56.427, "bb_type": "BI", "chi": -176.216, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.542, 1.471 ], "P_xyz": [ 0.172, 10.270, 0.401 ], "form": "A", "ssZp": 4.635, "Dp": 4.664, "splay_angle": 25.221, "splay_distance": 3.909, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 165.682, "theta": -167.426, "eta_prime": -176.612, "theta_prime": -162.206, "eta_base": -135.226, "theta_base": -128.649, "v0": 2.186, "v1": -23.903, "v2": 35.337, "v3": -35.070, "v4": 20.733, "amplitude": 36.632, "phase_angle": 15.281, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.869, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 215.657, 175.447, 211.726 ], "x_axis": [ 0.937, 0.028, 0.347 ], "y_axis": [ 0.263, 0.599, -0.757 ], "z_axis": [ -0.229, 0.801, 0.554 ], "quaternion": [ 0.879, -0.443, -0.164, -0.067 ] } }, { "index": 523, "index_chain": 523, "chain_name": "2", "nt_resnum": 599, "nt_name": "A", "nt_code": "A", "nt_id": "///2/599", "linked_nts": [ "///2/598", "///2/600" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart", "alpha": -56.616, "beta": 169.641, "gamma": 50.490, "delta": 81.573, "epsilon": -112.400, "zeta": 155.265, "epsilon_zeta": 92.335, "bb_type": "BII", "chi": -161.011, "glyco_bond": "anti", "C5prime_xyz": [ -1.277, 8.670, 0.596 ], "P_xyz": [ 1.320, 8.969, 0.784 ], "form": ".", "ssZp": 4.248, "Dp": 4.758, "splay_angle": 150.025, "splay_distance": 17.914, "splay_ratio": 0.966, "d22": null, "d64": null, "eta": 178.200, "theta": 123.428, "eta_prime": -171.524, "theta_prime": 96.067, "eta_base": -132.865, "theta_base": -15.210, "v0": 3.557, "v1": -25.192, "v2": 36.061, "v3": -35.031, "v4": 19.864, "amplitude": 37.049, "phase_angle": 13.256, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.848, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 215.379, 177.499, 215.041 ], "x_axis": [ 0.900, 0.397, -0.182 ], "y_axis": [ -0.373, 0.482, -0.792 ], "z_axis": [ -0.226, 0.781, 0.582 ], "quaternion": [ 0.861, -0.457, -0.013, 0.224 ] } }, { "index": 524, "index_chain": 524, "chain_name": "2", "nt_resnum": 600, "nt_name": "G", "nt_code": "G", "nt_id": "///2/600", "linked_nts": [ "///2/599", "///2/601" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart", "alpha": 72.919, "beta": 178.126, "gamma": 59.700, "delta": 82.393, "epsilon": -152.313, "zeta": -77.182, "epsilon_zeta": -75.131, "bb_type": "BI", "chi": -163.077, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.754, 0.725 ], "P_xyz": [ 1.268, 9.113, 1.043 ], "form": "A", "ssZp": 4.438, "Dp": 4.563, "splay_angle": 22.854, "splay_distance": 3.594, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": -3.778, "theta": -150.758, "eta_prime": 9.973, "theta_prime": -149.661, "eta_base": 124.366, "theta_base": -128.769, "v0": 1.738, "v1": -23.099, "v2": 34.456, "v3": -34.415, "v4": 20.632, "amplitude": 35.827, "phase_angle": 15.901, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.031, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 207.157, 190.261, 205.531 ], "x_axis": [ 0.986, -0.020, -0.163 ], "y_axis": [ 0.115, -0.630, 0.768 ], "z_axis": [ -0.118, -0.777, -0.619 ], "quaternion": [ 0.430, 0.899, 0.026, -0.078 ] } }, { "index": 525, "index_chain": 525, "chain_name": "2", "nt_resnum": 601, "nt_name": "G", "nt_code": "G", "nt_id": "///2/601", "linked_nts": [ "///2/600", "///2/602" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,junction-loop", "alpha": -67.332, "beta": 177.699, "gamma": 52.269, "delta": 85.192, "epsilon": -133.662, "zeta": -77.523, "epsilon_zeta": -56.139, "bb_type": "BI", "chi": -161.485, "glyco_bond": "anti", "C5prime_xyz": [ -1.232, 8.721, 0.672 ], "P_xyz": [ 1.320, 8.968, 1.242 ], "form": ".", "ssZp": 4.329, "Dp": 4.606, "splay_angle": 24.387, "splay_distance": 3.896, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 172.999, "theta": -133.875, "eta_prime": -178.839, "theta_prime": -129.775, "eta_base": -149.303, "theta_base": -91.054, "v0": 2.460, "v1": -22.478, "v2": 32.768, "v3": -32.303, "v4": 18.843, "amplitude": 33.856, "phase_angle": 14.567, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.926, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 206.709, 188.523, 202.417 ], "x_axis": [ 0.904, -0.150, 0.401 ], "y_axis": [ -0.413, -0.548, 0.728 ], "z_axis": [ 0.111, -0.823, -0.557 ], "quaternion": [ 0.447, 0.867, -0.162, 0.147 ] } }, { "index": 526, "index_chain": 526, "chain_name": "2", "nt_resnum": 602, "nt_name": "G", "nt_code": "G", "nt_id": "///2/602", "linked_nts": [ "///2/601", "///2/603" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,junction-loop,phosphate", "alpha": -60.406, "beta": 164.462, "gamma": 55.230, "delta": 84.079, "epsilon": -147.525, "zeta": 35.138, "epsilon_zeta": 177.337, "bb_type": "--", "chi": -147.884, "glyco_bond": "anti", "C5prime_xyz": [ -1.312, 8.786, -0.168 ], "P_xyz": [ 1.284, 9.046, -0.444 ], "form": ".", "ssZp": 3.988, "Dp": 4.560, "splay_angle": 27.820, "splay_distance": 4.580, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 166.163, "theta": -20.554, "eta_prime": -174.115, "theta_prime": -59.132, "eta_base": -121.726, "theta_base": -94.010, "v0": 1.763, "v1": -22.315, "v2": 33.163, "v3": -33.123, "v4": 19.805, "amplitude": 34.462, "phase_angle": 15.783, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.821, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 208.821, 185.444, 201.307 ], "x_axis": [ 0.384, -0.389, 0.837 ], "y_axis": [ -0.872, -0.450, 0.191 ], "z_axis": [ 0.302, -0.804, -0.513 ], "quaternion": [ 0.325, 0.766, -0.412, 0.372 ] } }, { "index": 527, "index_chain": 527, "chain_name": "2", "nt_resnum": 603, "nt_name": "C", "nt_code": "C", "nt_id": "///2/603", "linked_nts": [ "///2/602", "///2/604" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,hairpin-loop,junction-loop", "alpha": 162.237, "beta": 175.798, "gamma": 39.028, "delta": 143.923, "epsilon": -97.822, "zeta": 136.941, "epsilon_zeta": 125.237, "bb_type": "BII", "chi": -129.020, "glyco_bond": "anti", "C5prime_xyz": [ -1.720, 8.692, -0.779 ], "P_xyz": [ 0.467, 9.595, 0.353 ], "form": ".", "ssZp": 0.955, "Dp": 1.027, "splay_angle": 38.255, "splay_distance": 6.620, "splay_ratio": 0.328, "d22": null, "d64": null, "eta": 55.973, "theta": 166.292, "eta_prime": 112.449, "theta_prime": 139.614, "eta_base": 119.489, "theta_base": 136.705, "v0": -20.969, "v1": 34.013, "v2": -33.401, "v3": 22.143, "v4": -0.956, "amplitude": 34.971, "phase_angle": 162.769, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.496, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 210.744, 181.351, 202.037 ], "x_axis": [ 0.149, 0.563, -0.813 ], "y_axis": [ -0.912, -0.239, -0.333 ], "z_axis": [ -0.382, 0.791, 0.478 ], "quaternion": [ 0.589, -0.477, 0.183, 0.626 ] } }, { "index": 528, "index_chain": 528, "chain_name": "2", "nt_resnum": 604, "nt_name": "A", "nt_code": "A", "nt_id": "///2/604", "linked_nts": [ "///2/603", "///2/605" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,junction-loop,A-minor,ribose-zipper", "alpha": 81.697, "beta": -151.951, "gamma": 168.761, "delta": 83.093, "epsilon": -104.671, "zeta": -77.489, "epsilon_zeta": -27.183, "bb_type": "--", "chi": -165.001, "glyco_bond": "anti", "C5prime_xyz": [ -1.380, 8.653, 0.835 ], "P_xyz": [ 0.316, 9.885, -0.730 ], "form": ".", "ssZp": 4.275, "Dp": 4.689, "splay_angle": 23.861, "splay_distance": 3.809, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 150.975, "theta": -132.038, "eta_prime": 137.180, "theta_prime": -129.489, "eta_base": 141.808, "theta_base": -78.604, "v0": 2.167, "v1": -23.367, "v2": 34.442, "v3": -34.179, "v4": 20.234, "amplitude": 35.697, "phase_angle": 15.240, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.078, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 211.646, 175.432, 204.861 ], "x_axis": [ 0.114, 0.988, -0.103 ], "y_axis": [ -0.993, 0.118, 0.031 ], "z_axis": [ 0.043, 0.099, 0.994 ], "quaternion": [ 0.746, -0.023, 0.049, 0.664 ] } }, { "index": 529, "index_chain": 529, "chain_name": "2", "nt_resnum": 605, "nt_name": "A", "nt_code": "A", "nt_id": "///2/605", "linked_nts": [ "///2/604", "///2/606" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,A-minor,ribose-zipper,cap-acceptor", "alpha": -73.957, "beta": 174.257, "gamma": 51.459, "delta": 82.535, "epsilon": -158.998, "zeta": -76.338, "epsilon_zeta": -82.660, "bb_type": "BI", "chi": -114.529, "glyco_bond": "anti", "C5prime_xyz": [ -1.646, 8.131, -2.033 ], "P_xyz": [ 0.755, 8.133, -3.089 ], "form": ".", "ssZp": 2.339, "Dp": 4.580, "splay_angle": 65.386, "splay_distance": 10.283, "splay_ratio": 0.540, "d22": null, "d64": null, "eta": 145.030, "theta": -149.653, "eta_prime": 171.106, "theta_prime": -168.695, "eta_base": -124.388, "theta_base": 171.812, "v0": 4.742, "v1": -25.925, "v2": 36.099, "v3": -34.352, "v4": 18.679, "amplitude": 36.823, "phase_angle": 11.381, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.178, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 210.446, 178.602, 206.598 ], "x_axis": [ -0.694, 0.626, -0.355 ], "y_axis": [ -0.661, -0.359, 0.659 ], "z_axis": [ 0.285, 0.692, 0.663 ], "quaternion": [ 0.390, -0.021, 0.410, 0.824 ] } }, { "index": 530, "index_chain": 530, "chain_name": "2", "nt_resnum": 606, "nt_name": "G", "nt_code": "G", "nt_id": "///2/606", "linked_nts": [ "///2/605", "///2/607" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,phosphate,splayed-apart", "alpha": 166.928, "beta": 93.855, "gamma": -172.704, "delta": 144.643, "epsilon": -97.990, "zeta": -92.613, "epsilon_zeta": -5.378, "bb_type": "--", "chi": 80.331, "glyco_bond": "syn", "C5prime_xyz": [ -5.068, 4.877, 2.136 ], "P_xyz": [ -5.707, 5.949, 4.445 ], "form": ".", "ssZp": -0.813, "Dp": 0.876, "splay_angle": 107.293, "splay_distance": 16.582, "splay_ratio": 0.805, "d22": null, "d64": null, "eta": 177.751, "theta": -156.808, "eta_prime": 156.546, "theta_prime": -145.936, "eta_base": 136.980, "theta_base": -130.270, "v0": -24.474, "v1": 37.295, "v2": -35.136, "v3": 21.993, "v4": 1.355, "amplitude": 37.592, "phase_angle": 159.176, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 214.027, 180.513, 216.046 ], "x_axis": [ 0.806, -0.335, 0.488 ], "y_axis": [ -0.592, -0.451, 0.668 ], "z_axis": [ -0.004, -0.827, -0.562 ], "quaternion": [ 0.445, 0.839, -0.276, 0.144 ] } }, { "index": 531, "index_chain": 531, "chain_name": "2", "nt_resnum": 607, "nt_name": "U", "nt_code": "U", "nt_id": "///2/607", "linked_nts": [ "///2/606", "///2/608" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,splayed-apart", "alpha": -65.542, "beta": 136.129, "gamma": 175.298, "delta": 146.607, "epsilon": -153.462, "zeta": 49.181, "epsilon_zeta": 157.357, "bb_type": "--", "chi": -123.741, "glyco_bond": "anti", "C5prime_xyz": [ -1.911, 8.573, -1.023 ], "P_xyz": [ -1.249, 9.875, -3.204 ], "form": ".", "ssZp": 1.922, "Dp": 1.926, "splay_angle": 139.707, "splay_distance": 18.412, "splay_ratio": 0.939, "d22": 11.471, "d64": 14.466, "eta": -59.373, "theta": -2.983, "eta_prime": -36.803, "theta_prime": 8.803, "eta_base": -57.077, "theta_base": 74.465, "v0": -21.106, "v1": 35.281, "v2": -35.213, "v3": 23.929, "v4": -1.979, "amplitude": 36.579, "phase_angle": 164.292, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "2u", "suiteness": 0.088, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 200.221, 189.168, 219.118 ], "x_axis": [ -0.959, -0.284, -0.001 ], "y_axis": [ 0.271, -0.917, 0.292 ], "z_axis": [ -0.084, 0.280, 0.956 ], "quaternion": [ -0.142, -0.022, 0.146, 0.979 ] } }, { "index": 532, "index_chain": 532, "chain_name": "2", "nt_resnum": 608, "nt_name": "C", "nt_code": "C", "nt_id": "///2/608", "linked_nts": [ "///2/607", "///2/609" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,phosphate,splayed-apart", "alpha": 64.137, "beta": 131.753, "gamma": -58.696, "delta": 83.527, "epsilon": -149.095, "zeta": -66.858, "epsilon_zeta": -82.237, "bb_type": "BI", "chi": -166.812, "glyco_bond": "anti", "C5prime_xyz": [ -0.981, 8.553, 0.950 ], "P_xyz": [ 0.217, 9.527, 3.073 ], "form": "A", "ssZp": 4.612, "Dp": 4.685, "splay_angle": 23.230, "splay_distance": 3.620, "splay_ratio": 0.203, "d22": 4.110, "d64": 4.217, "eta": -177.715, "theta": -164.448, "eta_prime": -172.283, "theta_prime": -151.637, "eta_base": 149.025, "theta_base": -109.244, "v0": 6.922, "v1": -27.575, "v2": 36.652, "v3": -33.620, "v4": 16.860, "amplitude": 37.018, "phase_angle": 8.064, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 216.672, 181.054, 220.706 ], "x_axis": [ -0.089, 0.450, -0.888 ], "y_axis": [ -0.989, 0.067, 0.134 ], "z_axis": [ 0.120, 0.890, 0.439 ], "quaternion": [ 0.595, -0.318, 0.424, 0.604 ] } }, { "index": 533, "index_chain": 533, "chain_name": "2", "nt_resnum": 609, "nt_name": "U", "nt_code": "U", "nt_id": "///2/609", "linked_nts": [ "///2/608", "///2/610" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -71.635, "beta": 173.382, "gamma": 58.860, "delta": 79.201, "epsilon": -139.927, "zeta": -78.743, "epsilon_zeta": -61.184, "bb_type": "BI", "chi": -168.541, "glyco_bond": "anti", "C5prime_xyz": [ -1.347, 8.606, 1.021 ], "P_xyz": [ 1.244, 8.998, 1.130 ], "form": "A", "ssZp": 4.665, "Dp": 4.747, "splay_angle": 20.604, "splay_distance": 3.250, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 165.742, "theta": -146.581, "eta_prime": -178.662, "theta_prime": -146.972, "eta_base": -133.683, "theta_base": -125.026, "v0": 4.062, "v1": -26.844, "v2": 38.215, "v3": -36.888, "v4": 20.672, "amplitude": 39.184, "phase_angle": 12.769, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.913, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 218.271, 184.297, 220.882 ], "x_axis": [ -0.637, 0.354, -0.684 ], "y_axis": [ -0.762, -0.157, 0.628 ], "z_axis": [ 0.115, 0.922, 0.370 ], "quaternion": [ 0.379, -0.193, 0.527, 0.736 ] } }, { "index": 534, "index_chain": 534, "chain_name": "2", "nt_resnum": 610, "nt_name": "G", "nt_code": "G", "nt_id": "///2/610", "linked_nts": [ "///2/609", "///2/611" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -80.341, "beta": 167.525, "gamma": 66.265, "delta": 80.143, "epsilon": -153.008, "zeta": -64.563, "epsilon_zeta": -88.445, "bb_type": "BI", "chi": -175.577, "glyco_bond": "anti", "C5prime_xyz": [ -1.525, 8.573, 1.410 ], "P_xyz": [ 1.051, 9.043, 1.555 ], "form": "A", "ssZp": 4.623, "Dp": 4.624, "splay_angle": 26.723, "splay_distance": 4.192, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 158.046, "theta": -140.992, "eta_prime": 171.012, "theta_prime": -141.963, "eta_base": -149.867, "theta_base": -114.766, "v0": 2.422, "v1": -24.959, "v2": 36.720, "v3": -36.306, "v4": 21.362, "amplitude": 38.016, "phase_angle": 15.003, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.600, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 219.345, 187.313, 220.319 ], "x_axis": [ -0.936, -0.117, -0.331 ], "y_axis": [ -0.299, -0.230, 0.926 ], "z_axis": [ -0.185, 0.966, 0.180 ], "quaternion": [ 0.059, -0.168, 0.618, 0.766 ] } }, { "index": 535, "index_chain": 535, "chain_name": "2", "nt_resnum": 611, "nt_name": "G", "nt_code": "G", "nt_id": "///2/611", "linked_nts": [ "///2/610", "///2/612" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,internal-loop", "alpha": -73.553, "beta": -165.743, "gamma": 48.316, "delta": 81.975, "epsilon": -157.636, "zeta": -81.156, "epsilon_zeta": -76.480, "bb_type": "BI", "chi": -171.666, "glyco_bond": "anti", "C5prime_xyz": [ -1.339, 8.645, 1.223 ], "P_xyz": [ 0.953, 8.933, 2.474 ], "form": ".", "ssZp": 4.494, "Dp": 4.527, "splay_angle": 34.179, "splay_distance": 5.203, "splay_ratio": 0.294, "d22": null, "d64": null, "eta": 168.529, "theta": -161.955, "eta_prime": 179.770, "theta_prime": -156.213, "eta_base": -137.381, "theta_base": -136.965, "v0": 1.691, "v1": -23.072, "v2": 34.483, "v3": -34.476, "v4": 20.695, "amplitude": 35.871, "phase_angle": 15.988, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.758, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 218.095, 191.040, 218.865 ], "x_axis": [ -0.819, -0.516, 0.252 ], "y_axis": [ 0.404, -0.205, 0.892 ], "z_axis": [ -0.409, 0.831, 0.376 ], "quaternion": [ -0.297, -0.051, 0.556, 0.775 ] } }, { "index": 536, "index_chain": 536, "chain_name": "2", "nt_resnum": 612, "nt_name": "U", "nt_code": "U", "nt_id": "///2/612", "linked_nts": [ "///2/611", "///2/613" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,internal-loop", "alpha": -59.664, "beta": -178.856, "gamma": 52.384, "delta": 83.139, "epsilon": -162.445, "zeta": -70.900, "epsilon_zeta": -91.545, "bb_type": "BI", "chi": -178.073, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.421, 1.593 ], "P_xyz": [ 0.996, 8.515, 2.638 ], "form": ".", "ssZp": 4.412, "Dp": 4.487, "splay_angle": 31.462, "splay_distance": 4.776, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 178.338, "theta": -114.544, "eta_prime": -174.486, "theta_prime": -109.058, "eta_base": -150.704, "theta_base": -54.539, "v0": 3.260, "v1": -24.187, "v2": 34.763, "v3": -33.854, "v4": 19.286, "amplitude": 35.751, "phase_angle": 13.503, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.868, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 216.678, 195.999, 218.180 ], "x_axis": [ -0.563, -0.679, 0.471 ], "y_axis": [ 0.768, -0.219, 0.602 ], "z_axis": [ -0.305, 0.700, 0.645 ], "quaternion": [ -0.464, 0.053, 0.418, 0.779 ] } }, { "index": 537, "index_chain": 537, "chain_name": "2", "nt_resnum": 613, "nt_name": "G", "nt_code": "G", "nt_id": "///2/613", "linked_nts": [ "///2/612", "///2/614" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,internal-loop", "alpha": 169.042, "beta": -137.082, "gamma": 161.077, "delta": 147.002, "epsilon": -119.763, "zeta": 162.580, "epsilon_zeta": 77.657, "bb_type": "BII", "chi": -156.754, "glyco_bond": "anti", "C5prime_xyz": [ -1.850, 8.661, 0.820 ], "P_xyz": [ 0.729, 8.996, 0.474 ], "form": ".", "ssZp": 1.268, "Dp": 1.402, "splay_angle": 83.585, "splay_distance": 13.516, "splay_ratio": 0.667, "d22": null, "d64": null, "eta": -172.157, "theta": 133.512, "eta_prime": -130.090, "theta_prime": 144.278, "eta_base": -60.927, "theta_base": 159.667, "v0": -20.493, "v1": 35.055, "v2": -35.430, "v3": 24.494, "v4": -2.716, "amplitude": 36.607, "phase_angle": 165.432, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.377, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 214.605, 195.624, 222.467 ], "x_axis": [ 0.420, -0.541, 0.729 ], "y_axis": [ 0.829, 0.555, -0.066 ], "z_axis": [ -0.368, 0.632, 0.681 ], "quaternion": [ 0.815, -0.214, -0.337, -0.420 ] } }, { "index": 538, "index_chain": 538, "chain_name": "2", "nt_resnum": 614, "nt_name": "C", "nt_code": "C", "nt_id": "///2/614", "linked_nts": [ "///2/613", "///2/615" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,internal-loop", "alpha": 170.970, "beta": 175.195, "gamma": -178.785, "delta": 147.787, "epsilon": -93.694, "zeta": 78.935, "epsilon_zeta": 187.371, "bb_type": "--", "chi": -155.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.785, 8.676, 0.758 ], "P_xyz": [ 0.084, 10.419, 0.202 ], "form": ".", "ssZp": 0.730, "Dp": 0.777, "splay_angle": 77.655, "splay_distance": 13.288, "splay_ratio": 0.628, "d22": 6.336, "d64": 7.426, "eta": -86.552, "theta": 65.036, "eta_prime": -132.283, "theta_prime": 48.758, "eta_base": -152.008, "theta_base": 46.255, "v0": -20.716, "v1": 35.522, "v2": -35.967, "v3": 24.915, "v4": -2.850, "amplitude": 37.138, "phase_angle": 165.575, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 210.050, 201.877, 211.384 ], "x_axis": [ -0.539, -0.408, 0.737 ], "y_axis": [ 0.740, 0.187, 0.646 ], "z_axis": [ -0.401, 0.894, 0.201 ], "quaternion": [ -0.461, 0.134, 0.618, 0.623 ] } }, { "index": 539, "index_chain": 539, "chain_name": "2", "nt_resnum": 615, "nt_name": "C", "nt_code": "C", "nt_id": "///2/615", "linked_nts": [ "///2/614", "///2/616" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,internal-loop", "alpha": 66.341, "beta": 170.496, "gamma": -167.223, "delta": 82.328, "epsilon": -142.080, "zeta": -60.750, "epsilon_zeta": -81.330, "bb_type": "BI", "chi": -169.883, "glyco_bond": "anti", "C5prime_xyz": [ -1.467, 8.714, 1.094 ], "P_xyz": [ -0.679, 11.069, 0.253 ], "form": ".", "ssZp": 4.507, "Dp": 4.578, "splay_angle": 30.851, "splay_distance": 4.786, "splay_ratio": 0.266, "d22": null, "d64": null, "eta": 129.903, "theta": -169.264, "eta_prime": 113.554, "theta_prime": -155.180, "eta_base": 120.056, "theta_base": -96.559, "v0": -0.470, "v1": -21.093, "v2": 33.364, "v3": -34.554, "v4": 22.097, "amplitude": 35.358, "phase_angle": 19.334, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.492, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 220.911, 196.856, 217.164 ], "x_axis": [ -0.951, -0.301, -0.071 ], "y_axis": [ -0.240, 0.865, -0.441 ], "z_axis": [ 0.194, -0.402, -0.895 ], "quaternion": [ 0.069, -0.140, 0.963, -0.219 ] } }, { "index": 540, "index_chain": 540, "chain_name": "2", "nt_resnum": 616, "nt_name": "A", "nt_code": "A", "nt_id": "///2/616", "linked_nts": [ "///2/615", "///2/617" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,phosphate", "alpha": -69.705, "beta": 172.309, "gamma": 55.391, "delta": 81.873, "epsilon": -132.571, "zeta": -81.063, "epsilon_zeta": -51.508, "bb_type": "BI", "chi": -161.066, "glyco_bond": "anti", "C5prime_xyz": [ -1.218, 8.641, 0.598 ], "P_xyz": [ 1.391, 8.870, 0.680 ], "form": ".", "ssZp": 4.415, "Dp": 4.738, "splay_angle": 31.168, "splay_distance": 5.393, "splay_ratio": 0.278, "d22": null, "d64": null, "eta": 164.619, "theta": -101.977, "eta_prime": -172.514, "theta_prime": -106.278, "eta_base": -103.018, "theta_base": -77.223, "v0": 4.382, "v1": -25.793, "v2": 36.285, "v3": -34.773, "v4": 19.172, "amplitude": 37.098, "phase_angle": 12.017, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 218.517, 195.194, 213.367 ], "x_axis": [ -0.738, 0.552, -0.387 ], "y_axis": [ 0.655, 0.724, -0.216 ], "z_axis": [ 0.161, -0.413, -0.896 ], "quaternion": [ 0.150, 0.329, 0.916, -0.171 ] } }, { "index": 541, "index_chain": 541, "chain_name": "2", "nt_resnum": 617, "nt_name": "G", "nt_code": "G", "nt_id": "///2/617", "linked_nts": [ "///2/616", "///2/618" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,internal-loop", "alpha": 125.815, "beta": -133.749, "gamma": -158.699, "delta": 79.883, "epsilon": -143.672, "zeta": -69.514, "epsilon_zeta": -74.158, "bb_type": "BI", "chi": -177.239, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.463, 1.509 ], "P_xyz": [ -0.328, 10.413, 0.073 ], "form": "A", "ssZp": 4.746, "Dp": 4.731, "splay_angle": 27.361, "splay_distance": 4.362, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": 170.176, "theta": -172.603, "eta_prime": -162.900, "theta_prime": -166.376, "eta_base": -103.120, "theta_base": -138.529, "v0": 5.020, "v1": -27.486, "v2": 38.340, "v3": -36.472, "v4": 19.838, "amplitude": 39.113, "phase_angle": 11.406, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.040, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 215.561, 196.361, 209.010 ], "x_axis": [ -0.132, 0.879, -0.458 ], "y_axis": [ 0.991, 0.132, -0.033 ], "z_axis": [ 0.032, -0.458, -0.889 ], "quaternion": [ 0.167, 0.637, 0.734, -0.167 ] } }, { "index": 542, "index_chain": 542, "chain_name": "2", "nt_resnum": 618, "nt_name": "C", "nt_code": "C", "nt_id": "///2/618", "linked_nts": [ "///2/617", "///2/619" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop", "alpha": -66.002, "beta": 179.623, "gamma": 57.856, "delta": 78.133, "epsilon": -142.182, "zeta": -55.888, "epsilon_zeta": -86.294, "bb_type": "BI", "chi": -168.592, "glyco_bond": "anti", "C5prime_xyz": [ -1.557, 8.732, 1.001 ], "P_xyz": [ 0.947, 9.333, 1.427 ], "form": ".", "ssZp": 4.614, "Dp": 4.689, "splay_angle": 32.221, "splay_distance": 4.975, "splay_ratio": 0.278, "d22": null, "d64": null, "eta": 173.196, "theta": -127.676, "eta_prime": -173.711, "theta_prime": -123.131, "eta_base": -136.004, "theta_base": -70.623, "v0": 0.786, "v1": -24.411, "v2": 37.440, "v3": -37.997, "v4": 23.434, "amplitude": 39.247, "phase_angle": 17.456, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.939, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 213.319, 195.584, 205.349 ], "x_axis": [ 0.437, 0.829, -0.349 ], "y_axis": [ 0.897, -0.371, 0.242 ], "z_axis": [ 0.072, -0.419, -0.905 ], "quaternion": [ 0.201, 0.824, 0.524, -0.084 ] } }, { "index": 543, "index_chain": 543, "chain_name": "2", "nt_resnum": 619, "nt_name": "A", "nt_code": "A", "nt_id": "///2/619", "linked_nts": [ "///2/618", "///2/620" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,junction-loop,splayed-apart", "alpha": -72.247, "beta": 166.925, "gamma": 64.292, "delta": 79.859, "epsilon": -134.072, "zeta": -73.707, "epsilon_zeta": -60.365, "bb_type": "BI", "chi": -170.626, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.580, 1.132 ], "P_xyz": [ 1.170, 8.999, 1.092 ], "form": ".", "ssZp": 4.651, "Dp": 4.740, "splay_angle": 165.200, "splay_distance": 14.793, "splay_ratio": 0.992, "d22": null, "d64": null, "eta": 164.233, "theta": -108.632, "eta_prime": -169.825, "theta_prime": -161.013, "eta_base": -93.760, "theta_base": 134.947, "v0": 3.349, "v1": -25.778, "v2": 37.216, "v3": -36.282, "v4": 20.774, "amplitude": 38.306, "phase_angle": 13.703, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.677, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 216.065, 197.197, 201.527 ], "x_axis": [ 0.988, 0.149, 0.030 ], "y_axis": [ 0.128, -0.921, 0.367 ], "z_axis": [ 0.082, -0.359, -0.930 ], "quaternion": [ 0.185, 0.980, 0.071, 0.028 ] } }, { "index": 544, "index_chain": 544, "chain_name": "2", "nt_resnum": 620, "nt_name": "G", "nt_code": "G", "nt_id": "///2/620", "linked_nts": [ "///2/619", "///2/621" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,junction-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 151.804, "beta": 106.314, "gamma": 53.913, "delta": 81.524, "epsilon": -117.533, "zeta": -64.296, "epsilon_zeta": -53.237, "bb_type": "--", "chi": -68.270, "glyco_bond": "--", "C5prime_xyz": [ -3.109, 6.338, -3.402 ], "P_xyz": [ -1.733, 4.253, -4.199 ], "form": ".", "ssZp": -2.243, "Dp": 4.736, "splay_angle": 47.155, "splay_distance": 7.755, "splay_ratio": 0.401, "d22": null, "d64": null, "eta": -34.185, "theta": -93.885, "eta_prime": 14.145, "theta_prime": -102.452, "eta_base": 41.943, "theta_base": -98.880, "v0": 1.928, "v1": -23.954, "v2": 35.596, "v3": -35.450, "v4": 21.157, "amplitude": 36.969, "phase_angle": 15.666, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.114, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 211.857, 183.396, 198.257 ], "x_axis": [ -0.856, -0.030, 0.516 ], "y_axis": [ -0.199, 0.941, -0.274 ], "z_axis": [ -0.478, -0.337, -0.811 ], "quaternion": [ -0.262, -0.060, 0.950, -0.161 ] } }, { "index": 545, "index_chain": 545, "chain_name": "2", "nt_resnum": 621, "nt_name": "C", "nt_code": "C", "nt_id": "///2/621", "linked_nts": [ "///2/620", "///2/622" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,junction-loop,phosphate", "alpha": -80.540, "beta": -165.122, "gamma": 52.016, "delta": 82.795, "epsilon": -150.791, "zeta": -74.924, "epsilon_zeta": -75.867, "bb_type": "BI", "chi": -158.418, "glyco_bond": "anti", "C5prime_xyz": [ -1.286, 8.775, 0.440 ], "P_xyz": [ 1.182, 9.215, 1.208 ], "form": "A", "ssZp": 4.335, "Dp": 4.568, "splay_angle": 24.001, "splay_distance": 3.802, "splay_ratio": 0.208, "d22": 4.448, "d64": 4.375, "eta": 155.673, "theta": -148.341, "eta_prime": 178.420, "theta_prime": -144.351, "eta_base": -165.535, "theta_base": -113.645, "v0": 1.666, "v1": -22.929, "v2": 34.254, "v3": -34.269, "v4": 20.568, "amplitude": 35.636, "phase_angle": 16.006, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.389, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 206.759, 187.715, 202.194 ], "x_axis": [ 0.889, -0.304, 0.342 ], "y_axis": [ 0.456, 0.538, -0.709 ], "z_axis": [ 0.032, 0.786, 0.617 ], "quaternion": [ 0.872, -0.429, -0.089, -0.218 ] } }, { "index": 546, "index_chain": 546, "chain_name": "2", "nt_resnum": 622, "nt_name": "C", "nt_code": "C", "nt_id": "///2/622", "linked_nts": [ "///2/621", "///2/623" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop", "alpha": -61.964, "beta": 168.307, "gamma": 56.628, "delta": 81.404, "epsilon": -147.718, "zeta": -70.391, "epsilon_zeta": -77.327, "bb_type": "BI", "chi": -156.835, "glyco_bond": "anti", "C5prime_xyz": [ -1.233, 8.784, 0.335 ], "P_xyz": [ 1.371, 9.073, 0.230 ], "form": ".", "ssZp": 4.330, "Dp": 4.629, "splay_angle": 51.644, "splay_distance": 8.281, "splay_ratio": 0.437, "d22": null, "d64": null, "eta": 170.397, "theta": -95.885, "eta_prime": -175.144, "theta_prime": -91.364, "eta_base": -133.149, "theta_base": -71.472, "v0": 2.248, "v1": -23.981, "v2": 35.405, "v3": -35.079, "v4": 20.712, "amplitude": 36.685, "phase_angle": 15.179, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 207.311, 189.799, 205.325 ], "x_axis": [ 0.991, 0.022, -0.129 ], "y_axis": [ -0.111, 0.663, -0.740 ], "z_axis": [ 0.069, 0.748, 0.660 ], "quaternion": [ 0.910, -0.409, 0.054, 0.036 ] } }, { "index": 547, "index_chain": 547, "chain_name": "2", "nt_resnum": 623, "nt_name": "G", "nt_code": "G", "nt_id": "///2/623", "linked_nts": [ "///2/622", "///2/624" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop", "alpha": 146.761, "beta": -118.630, "gamma": -175.390, "delta": 80.426, "epsilon": -152.576, "zeta": -72.031, "epsilon_zeta": -80.545, "bb_type": "BI", "chi": -179.185, "glyco_bond": "anti", "C5prime_xyz": [ -1.599, 8.441, 1.611 ], "P_xyz": [ -0.228, 9.856, -0.124 ], "form": "A", "ssZp": 4.651, "Dp": 4.650, "splay_angle": 26.824, "splay_distance": 4.261, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": -179.728, "theta": -166.535, "eta_prime": -135.626, "theta_prime": -169.934, "eta_base": -77.805, "theta_base": -152.615, "v0": 3.736, "v1": -26.202, "v2": 37.458, "v3": -36.344, "v4": 20.553, "amplitude": 38.469, "phase_angle": 13.162, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.219, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 213.339, 195.467, 205.647 ], "x_axis": [ 0.386, 0.785, -0.484 ], "y_axis": [ -0.919, 0.281, -0.277 ], "z_axis": [ -0.081, 0.552, 0.830 ], "quaternion": [ 0.790, -0.262, 0.128, 0.539 ] } }, { "index": 548, "index_chain": 548, "chain_name": "2", "nt_resnum": 624, "nt_name": "C", "nt_code": "C", "nt_id": "///2/624", "linked_nts": [ "///2/623", "///2/625" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -65.924, "beta": -170.500, "gamma": 52.555, "delta": 80.243, "epsilon": -149.220, "zeta": -62.788, "epsilon_zeta": -86.432, "bb_type": "BI", "chi": -160.386, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.790, 0.540 ], "P_xyz": [ 1.194, 9.292, 1.120 ], "form": ".", "ssZp": 4.430, "Dp": 4.627, "splay_angle": 26.647, "splay_distance": 4.667, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 177.377, "theta": -114.011, "eta_prime": -175.102, "theta_prime": -121.410, "eta_base": -149.115, "theta_base": -93.803, "v0": 1.657, "v1": -23.991, "v2": 35.998, "v3": -36.016, "v4": 21.680, "amplitude": 37.474, "phase_angle": 16.133, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.879, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 215.659, 196.612, 209.033 ], "x_axis": [ -0.137, 0.822, -0.552 ], "y_axis": [ -0.989, -0.142, 0.033 ], "z_axis": [ -0.051, 0.551, 0.833 ], "quaternion": [ 0.623, -0.208, 0.201, 0.727 ] } }, { "index": 549, "index_chain": 549, "chain_name": "2", "nt_resnum": 625, "nt_name": "G", "nt_code": "G", "nt_id": "///2/625", "linked_nts": [ "///2/624", "///2/626" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": 169.097, "beta": -175.928, "gamma": 167.566, "delta": 82.198, "epsilon": -107.089, "zeta": -68.718, "epsilon_zeta": -38.372, "bb_type": "--", "chi": -164.362, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.699, 0.792 ], "P_xyz": [ 0.095, 10.358, -0.673 ], "form": ".", "ssZp": 4.309, "Dp": 4.737, "splay_angle": 54.200, "splay_distance": 8.375, "splay_ratio": 0.456, "d22": null, "d64": null, "eta": 163.833, "theta": -135.039, "eta_prime": -178.580, "theta_prime": -117.518, "eta_base": -134.466, "theta_base": -102.809, "v0": 3.084, "v1": -24.505, "v2": 35.386, "v3": -34.608, "v4": 19.917, "amplitude": 36.452, "phase_angle": 13.892, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.591, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 216.298, 201.127, 210.026 ], "x_axis": [ -0.671, 0.472, -0.571 ], "y_axis": [ -0.740, -0.474, 0.478 ], "z_axis": [ -0.044, 0.743, 0.667 ], "quaternion": [ 0.361, -0.183, 0.364, 0.839 ] } }, { "index": 550, "index_chain": 550, "chain_name": "2", "nt_resnum": 626, "nt_name": "G", "nt_code": "G", "nt_id": "///2/626", "linked_nts": [ "///2/625", "///2/627" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -79.913, "beta": -120.001, "gamma": 58.937, "delta": 146.189, "epsilon": -149.899, "zeta": 57.978, "epsilon_zeta": 152.123, "bb_type": "--", "chi": -66.037, "glyco_bond": "--", "C5prime_xyz": [ -3.154, 6.782, -3.068 ], "P_xyz": [ -1.016, 8.237, -3.510 ], "form": ".", "ssZp": 1.065, "Dp": 1.902, "splay_angle": 129.911, "splay_distance": 17.896, "splay_ratio": 0.906, "d22": null, "d64": null, "eta": -171.317, "theta": 37.975, "eta_prime": -149.954, "theta_prime": 30.295, "eta_base": -136.556, "theta_base": 71.649, "v0": -20.671, "v1": 34.580, "v2": -34.552, "v3": 23.500, "v4": -1.972, "amplitude": 35.881, "phase_angle": 164.356, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.343, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 210.964, 206.788, 213.129 ], "x_axis": [ -0.793, -0.322, -0.516 ], "y_axis": [ -0.216, -0.644, 0.734 ], "z_axis": [ -0.569, 0.694, 0.442 ], "quaternion": [ -0.031, -0.320, 0.421, 0.848 ] } }, { "index": 551, "index_chain": 551, "chain_name": "2", "nt_resnum": 627, "nt_name": "U", "nt_code": "U", "nt_id": "///2/627", "linked_nts": [ "///2/626", "///2/628" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -105.966, "beta": -129.281, "gamma": 63.349, "delta": 145.612, "epsilon": -7.749, "zeta": -57.359, "epsilon_zeta": 49.610, "bb_type": "--", "chi": -110.864, "glyco_bond": "anti", "C5prime_xyz": [ -2.182, 8.331, -1.666 ], "P_xyz": [ -0.131, 9.509, -0.518 ], "form": ".", "ssZp": -0.335, "Dp": 0.853, "splay_angle": 150.822, "splay_distance": 16.484, "splay_ratio": 0.968, "d22": null, "d64": null, "eta": -148.689, "theta": 118.927, "eta_prime": -99.746, "theta_prime": 119.153, "eta_base": -139.452, "theta_base": -172.404, "v0": -22.219, "v1": 36.086, "v2": -35.391, "v3": 23.502, "v4": -1.011, "amplitude": 37.055, "phase_angle": 162.764, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 219.854, 199.473, 226.830 ], "x_axis": [ 0.590, 0.679, -0.437 ], "y_axis": [ -0.803, 0.440, -0.402 ], "z_axis": [ -0.081, 0.588, 0.805 ], "quaternion": [ 0.842, -0.294, 0.106, 0.440 ] } }, { "index": 552, "index_chain": 552, "chain_name": "2", "nt_resnum": 628, "nt_name": "A", "nt_code": "A", "nt_id": "///2/628", "linked_nts": [ "///2/627", "///2/629" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,internal-loop,splayed-apart", "alpha": -161.492, "beta": -49.608, "gamma": -138.813, "delta": 146.343, "epsilon": -84.210, "zeta": -107.023, "epsilon_zeta": 22.812, "bb_type": "--", "chi": 63.207, "glyco_bond": "syn", "C5prime_xyz": [ -5.291, 3.985, 1.379 ], "P_xyz": [ -5.171, 4.747, 3.898 ], "form": ".", "ssZp": -0.484, "Dp": 0.554, "splay_angle": 162.107, "splay_distance": 19.008, "splay_ratio": 0.988, "d22": null, "d64": null, "eta": 32.517, "theta": -149.107, "eta_prime": -40.950, "theta_prime": -165.702, "eta_base": -94.668, "theta_base": -139.630, "v0": -21.599, "v1": 35.556, "v2": -35.153, "v3": 23.625, "v4": -1.474, "amplitude": 36.663, "phase_angle": 163.495, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 204.247, 194.596, 228.924 ], "x_axis": [ -0.141, -0.637, 0.758 ], "y_axis": [ 0.872, -0.443, -0.210 ], "z_axis": [ 0.469, 0.631, 0.618 ], "quaternion": [ 0.508, -0.414, -0.142, -0.742 ] } }, { "index": 553, "index_chain": 553, "chain_name": "2", "nt_resnum": 629, "nt_name": "A", "nt_code": "A", "nt_id": "///2/629", "linked_nts": [ "///2/628", "///2/630" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart", "alpha": 62.013, "beta": 179.342, "gamma": 60.900, "delta": 146.318, "epsilon": -86.230, "zeta": -135.097, "epsilon_zeta": 48.867, "bb_type": "--", "chi": -108.510, "glyco_bond": "anti", "C5prime_xyz": [ -2.099, 8.270, -1.770 ], "P_xyz": [ 0.397, 9.082, -1.689 ], "form": ".", "ssZp": 0.474, "Dp": 0.651, "splay_angle": 101.980, "splay_distance": 12.915, "splay_ratio": 0.793, "d22": null, "d64": null, "eta": -56.441, "theta": -94.993, "eta_prime": 15.093, "theta_prime": -149.845, "eta_base": -30.324, "theta_base": 144.113, "v0": -21.137, "v1": 35.155, "v2": -34.990, "v3": 23.707, "v4": -1.814, "amplitude": 36.391, "phase_angle": 164.053, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.124, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 216.453, 194.289, 214.355 ], "x_axis": [ 0.763, 0.434, 0.480 ], "y_axis": [ -0.473, -0.130, 0.871 ], "z_axis": [ 0.441, -0.891, 0.106 ], "quaternion": [ 0.659, 0.668, -0.015, 0.344 ] } }, { "index": 554, "index_chain": 554, "chain_name": "2", "nt_resnum": 630, "nt_name": "U", "nt_code": "U", "nt_id": "///2/630", "linked_nts": [ "///2/629", "///2/631" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 53.524, "beta": -159.831, "gamma": 65.592, "delta": 81.776, "epsilon": -124.466, "zeta": -75.040, "epsilon_zeta": -49.426, "bb_type": "--", "chi": 61.821, "glyco_bond": "syn", "C5prime_xyz": [ -5.294, 4.236, 1.788 ], "P_xyz": [ -5.287, 1.727, 2.553 ], "form": ".", "ssZp": -2.050, "Dp": 4.518, "splay_angle": 45.026, "splay_distance": 6.872, "splay_ratio": 0.395, "d22": 6.511, "d64": 7.349, "eta": -35.369, "theta": -130.314, "eta_prime": 0.951, "theta_prime": -115.588, "eta_base": 46.288, "theta_base": -132.953, "v0": -2.871, "v1": -18.991, "v2": 32.286, "v3": -34.893, "v4": 23.793, "amplitude": 35.124, "phase_angle": 23.189, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.514, "filter_rmsd": 0.110, "frame": { "rmsd": 0.009, "origin": [ 204.438, 189.559, 214.117 ], "x_axis": [ -0.859, -0.353, -0.372 ], "y_axis": [ 0.250, -0.922, 0.297 ], "z_axis": [ -0.447, 0.162, 0.880 ], "quaternion": [ -0.158, -0.214, 0.120, 0.957 ] } }, { "index": 555, "index_chain": 555, "chain_name": "2", "nt_resnum": 631, "nt_name": "U", "nt_code": "U", "nt_id": "///2/631", "linked_nts": [ "///2/630", "///2/632" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -66.833, "beta": -143.610, "gamma": 54.459, "delta": 146.512, "epsilon": -88.094, "zeta": -89.833, "epsilon_zeta": 1.739, "bb_type": "--", "chi": -141.801, "glyco_bond": "anti", "C5prime_xyz": [ -1.823, 8.718, -0.052 ], "P_xyz": [ -0.286, 9.407, 1.962 ], "form": ".", "ssZp": 0.610, "Dp": 0.648, "splay_angle": 103.054, "splay_distance": 14.913, "splay_ratio": 0.784, "d22": 8.219, "d64": 9.581, "eta": -148.365, "theta": -55.536, "eta_prime": -132.103, "theta_prime": -74.854, "eta_base": -157.858, "theta_base": -43.055, "v0": -21.197, "v1": 35.298, "v2": -35.139, "v3": 23.863, "v4": -1.884, "amplitude": 36.532, "phase_angle": 164.129, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.840, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 207.267, 192.183, 208.431 ], "x_axis": [ -0.855, 0.041, 0.518 ], "y_axis": [ 0.396, -0.594, 0.701 ], "z_axis": [ 0.336, 0.804, 0.491 ], "quaternion": [ -0.104, 0.249, 0.439, 0.857 ] } }, { "index": 556, "index_chain": 556, "chain_name": "2", "nt_resnum": 632, "nt_name": "C", "nt_code": "C", "nt_id": "///2/632", "linked_nts": [ "///2/631", "///2/633" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart", "alpha": -84.689, "beta": -174.273, "gamma": 54.695, "delta": 83.599, "epsilon": -132.549, "zeta": -78.983, "epsilon_zeta": -53.566, "bb_type": "BI", "chi": -167.434, "glyco_bond": "anti", "C5prime_xyz": [ -1.069, 8.597, 1.006 ], "P_xyz": [ 1.461, 8.689, 1.691 ], "form": "A", "ssZp": 4.554, "Dp": 4.711, "splay_angle": 27.335, "splay_distance": 4.292, "splay_ratio": 0.236, "d22": 4.393, "d64": 4.149, "eta": 148.905, "theta": -136.558, "eta_prime": -172.209, "theta_prime": -131.938, "eta_base": -145.758, "theta_base": -103.020, "v0": 4.707, "v1": -25.343, "v2": 35.217, "v3": -33.485, "v4": 18.175, "amplitude": 35.910, "phase_angle": 11.276, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.651, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 217.678, 191.468, 219.085 ], "x_axis": [ -0.782, -0.564, 0.265 ], "y_axis": [ -0.195, -0.182, -0.964 ], "z_axis": [ 0.592, -0.805, 0.033 ], "quaternion": [ -0.131, 0.303, -0.626, 0.707 ] } }, { "index": 557, "index_chain": 557, "chain_name": "2", "nt_resnum": 633, "nt_name": "C", "nt_code": "C", "nt_id": "///2/633", "linked_nts": [ "///2/632", "///2/634" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.885, "beta": 176.472, "gamma": 48.002, "delta": 82.403, "epsilon": -144.197, "zeta": -82.518, "epsilon_zeta": -61.679, "bb_type": "BI", "chi": -161.332, "glyco_bond": "anti", "C5prime_xyz": [ -1.189, 8.720, 0.625 ], "P_xyz": [ 1.375, 8.997, 1.103 ], "form": "A", "ssZp": 4.438, "Dp": 4.650, "splay_angle": 22.576, "splay_distance": 3.765, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 165.818, "theta": -119.888, "eta_prime": 179.302, "theta_prime": -130.357, "eta_base": -140.135, "theta_base": -108.822, "v0": 3.199, "v1": -24.479, "v2": 35.293, "v3": -34.449, "v4": 19.726, "amplitude": 36.327, "phase_angle": 13.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.809, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 219.020, 187.622, 220.438 ], "x_axis": [ -0.889, -0.249, -0.384 ], "y_axis": [ 0.339, 0.205, -0.918 ], "z_axis": [ 0.307, -0.947, -0.098 ], "quaternion": [ 0.233, 0.030, 0.740, -0.630 ] } }, { "index": 558, "index_chain": 558, "chain_name": "2", "nt_resnum": 634, "nt_name": "A", "nt_code": "A", "nt_id": "///2/634", "linked_nts": [ "///2/633", "///2/635" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 164.919, "beta": -163.869, "gamma": 155.993, "delta": 82.566, "epsilon": -138.669, "zeta": -86.443, "epsilon_zeta": -52.226, "bb_type": "BI", "chi": 177.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.291, 1.846 ], "P_xyz": [ 0.592, 9.726, 1.104 ], "form": "A", "ssZp": 4.662, "Dp": 4.677, "splay_angle": 24.249, "splay_distance": 3.678, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 144.119, "theta": -166.515, "eta_prime": 164.108, "theta_prime": -164.615, "eta_base": -152.983, "theta_base": -142.779, "v0": 3.407, "v1": -24.525, "v2": 35.108, "v3": -34.140, "v4": 19.399, "amplitude": 36.080, "phase_angle": 13.333, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.201, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 218.150, 183.977, 220.805 ], "x_axis": [ -0.617, 0.416, -0.669 ], "y_axis": [ 0.784, 0.242, -0.572 ], "z_axis": [ -0.076, -0.877, -0.475 ], "quaternion": [ 0.194, 0.393, 0.764, -0.474 ] } }, { "index": 559, "index_chain": 559, "chain_name": "2", "nt_resnum": 635, "nt_name": "G", "nt_code": "G", "nt_id": "///2/635", "linked_nts": [ "///2/634", "///2/636" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.215, "beta": 174.838, "gamma": 51.350, "delta": 83.055, "epsilon": -145.837, "zeta": -79.756, "epsilon_zeta": -66.081, "bb_type": "BI", "chi": -170.413, "glyco_bond": "anti", "C5prime_xyz": [ -1.132, 8.551, 1.173 ], "P_xyz": [ 1.428, 8.629, 1.746 ], "form": "A", "ssZp": 4.610, "Dp": 4.666, "splay_angle": 22.478, "splay_distance": 3.516, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 167.565, "theta": -147.721, "eta_prime": 175.858, "theta_prime": -146.164, "eta_base": -153.312, "theta_base": -129.428, "v0": 5.251, "v1": -26.014, "v2": 35.737, "v3": -33.696, "v4": 17.957, "amplitude": 36.346, "phase_angle": 10.502, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.801, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 216.481, 180.700, 220.735 ], "x_axis": [ -0.066, 0.577, -0.814 ], "y_axis": [ 0.994, -0.036, -0.106 ], "z_axis": [ -0.091, -0.816, -0.571 ], "quaternion": [ 0.286, 0.621, 0.633, -0.364 ] } }, { "index": 560, "index_chain": 560, "chain_name": "2", "nt_resnum": 636, "nt_name": "C", "nt_code": "C", "nt_id": "///2/636", "linked_nts": [ "///2/635", "///2/637" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -63.909, "beta": 169.166, "gamma": 56.311, "delta": 81.686, "epsilon": -146.061, "zeta": -64.039, "epsilon_zeta": -82.022, "bb_type": "BI", "chi": -166.294, "glyco_bond": "anti", "C5prime_xyz": [ -1.322, 8.708, 0.902 ], "P_xyz": [ 1.270, 9.018, 1.150 ], "form": "A", "ssZp": 4.528, "Dp": 4.630, "splay_angle": 25.192, "splay_distance": 3.934, "splay_ratio": 0.218, "d22": 3.746, "d64": 3.759, "eta": 169.085, "theta": -133.299, "eta_prime": -179.378, "theta_prime": -132.117, "eta_base": -149.417, "theta_base": -88.440, "v0": 2.172, "v1": -24.040, "v2": 35.500, "v3": -35.207, "v4": 20.833, "amplitude": 36.799, "phase_angle": 15.270, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.931, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 214.401, 178.264, 219.284 ], "x_axis": [ 0.421, 0.552, -0.720 ], "y_axis": [ 0.900, -0.354, 0.255 ], "z_axis": [ -0.114, -0.755, -0.646 ], "quaternion": [ 0.324, 0.778, 0.466, -0.268 ] } }, { "index": 561, "index_chain": 561, "chain_name": "2", "nt_resnum": 637, "nt_name": "U", "nt_code": "U", "nt_id": "///2/637", "linked_nts": [ "///2/636", "///2/638" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -68.816, "beta": 168.090, "gamma": 59.434, "delta": 81.454, "epsilon": -143.524, "zeta": -70.900, "epsilon_zeta": -72.624, "bb_type": "BI", "chi": -165.380, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.656, 0.852 ], "P_xyz": [ 1.229, 9.000, 0.894 ], "form": ".", "ssZp": 4.543, "Dp": 4.670, "splay_angle": 28.931, "splay_distance": 4.507, "splay_ratio": 0.251, "d22": 4.315, "d64": 4.551, "eta": 164.530, "theta": -137.126, "eta_prime": -174.070, "theta_prime": -135.258, "eta_base": -109.141, "theta_base": -100.654, "v0": 3.183, "v1": -25.000, "v2": 36.116, "v3": -35.232, "v4": 20.228, "amplitude": 37.187, "phase_angle": 13.788, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 214.900, 177.303, 215.502 ], "x_axis": [ 0.941, 0.158, -0.301 ], "y_axis": [ 0.323, -0.688, 0.650 ], "z_axis": [ -0.105, -0.708, -0.698 ], "quaternion": [ 0.372, 0.912, 0.132, -0.111 ] } }, { "index": 562, "index_chain": 562, "chain_name": "2", "nt_resnum": 638, "nt_name": "C", "nt_code": "C", "nt_id": "///2/638", "linked_nts": [ "///2/637", "///2/639" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper", "alpha": -60.983, "beta": 168.714, "gamma": 58.984, "delta": 80.813, "epsilon": -135.743, "zeta": -99.256, "epsilon_zeta": -36.487, "bb_type": "BI", "chi": -162.158, "glyco_bond": "anti", "C5prime_xyz": [ -1.282, 8.739, 0.657 ], "P_xyz": [ 1.322, 9.055, 0.608 ], "form": "A", "ssZp": 4.457, "Dp": 4.710, "splay_angle": 24.306, "splay_distance": 3.794, "splay_ratio": 0.211, "d22": 4.880, "d64": 4.794, "eta": 173.690, "theta": -159.312, "eta_prime": -168.895, "theta_prime": -157.108, "eta_base": -117.884, "theta_base": -145.024, "v0": 2.798, "v1": -24.880, "v2": 36.320, "v3": -35.686, "v4": 20.732, "amplitude": 37.501, "phase_angle": 14.419, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.929, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 216.419, 175.313, 211.755 ], "x_axis": [ 0.911, -0.340, 0.233 ], "y_axis": [ -0.403, -0.619, 0.674 ], "z_axis": [ -0.086, -0.708, -0.701 ], "quaternion": [ 0.384, 0.899, -0.207, 0.041 ] } }, { "index": 563, "index_chain": 563, "chain_name": "2", "nt_resnum": 639, "nt_name": "C", "nt_code": "C", "nt_id": "///2/639", "linked_nts": [ "///2/638", "///2/640" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper", "alpha": -57.924, "beta": 149.505, "gamma": 62.980, "delta": 81.669, "epsilon": -143.054, "zeta": -72.328, "epsilon_zeta": -70.726, "bb_type": "BI", "chi": -160.001, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.766, 0.514 ], "P_xyz": [ 1.233, 8.927, -0.100 ], "form": ".", "ssZp": 4.408, "Dp": 4.659, "splay_angle": 19.420, "splay_distance": 3.207, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": 170.209, "theta": -135.167, "eta_prime": 179.863, "theta_prime": -139.169, "eta_base": -158.854, "theta_base": -138.362, "v0": 2.283, "v1": -24.171, "v2": 35.637, "v3": -35.305, "v4": 20.831, "amplitude": 36.919, "phase_angle": 15.143, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.359, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 216.130, 173.864, 208.260 ], "x_axis": [ 0.708, -0.494, 0.505 ], "y_axis": [ -0.704, -0.545, 0.455 ], "z_axis": [ 0.051, -0.678, -0.733 ], "quaternion": [ 0.328, 0.864, -0.347, 0.161 ] } }, { "index": 564, "index_chain": 564, "chain_name": "2", "nt_resnum": 640, "nt_name": "A", "nt_code": "A", "nt_id": "///2/640", "linked_nts": [ "///2/639", "///2/641" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop", "alpha": -85.286, "beta": -166.840, "gamma": 51.735, "delta": 86.176, "epsilon": -160.611, "zeta": -78.705, "epsilon_zeta": -81.907, "bb_type": "BI", "chi": -140.754, "glyco_bond": "anti", "C5prime_xyz": [ -1.596, 8.765, -0.586 ], "P_xyz": [ 0.860, 9.605, -0.165 ], "form": ".", "ssZp": 3.633, "Dp": 4.256, "splay_angle": 16.788, "splay_distance": 2.873, "splay_ratio": 0.158, "d22": null, "d64": null, "eta": 159.051, "theta": -157.396, "eta_prime": 170.219, "theta_prime": -154.499, "eta_base": -174.515, "theta_base": -124.666, "v0": -2.479, "v1": -17.110, "v2": 28.942, "v3": -31.223, "v4": 21.313, "amplitude": 31.453, "phase_angle": 23.052, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.571, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 217.609, 172.729, 205.650 ], "x_axis": [ 0.163, -0.194, 0.967 ], "y_axis": [ -0.880, -0.472, 0.054 ], "z_axis": [ 0.447, -0.860, -0.248 ], "quaternion": [ 0.333, 0.686, -0.391, 0.515 ] } }, { "index": 565, "index_chain": 565, "chain_name": "2", "nt_resnum": 641, "nt_name": "A", "nt_code": "A", "nt_id": "///2/641", "linked_nts": [ "///2/640", "///2/642" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop", "alpha": -76.553, "beta": 179.579, "gamma": 51.991, "delta": 86.028, "epsilon": -135.873, "zeta": -56.019, "epsilon_zeta": -79.854, "bb_type": "BI", "chi": -124.608, "glyco_bond": "anti", "C5prime_xyz": [ -1.125, 8.278, -1.454 ], "P_xyz": [ 1.452, 8.180, -1.960 ], "form": ".", "ssZp": 2.705, "Dp": 4.723, "splay_angle": 32.791, "splay_distance": 5.511, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 166.493, "theta": -121.466, "eta_prime": 173.902, "theta_prime": -119.064, "eta_base": -151.394, "theta_base": -101.351, "v0": 8.962, "v1": -27.930, "v2": 35.310, "v3": -31.112, "v4": 14.033, "amplitude": 35.412, "phase_angle": 4.342, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.756, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 218.462, 170.074, 204.961 ], "x_axis": [ -0.360, -0.371, 0.856 ], "y_axis": [ -0.639, -0.571, -0.516 ], "z_axis": [ 0.680, -0.733, -0.031 ], "quaternion": [ 0.097, 0.557, -0.453, 0.689 ] } }, { "index": 566, "index_chain": 566, "chain_name": "2", "nt_resnum": 642, "nt_name": "U", "nt_code": "U", "nt_id": "///2/642", "linked_nts": [ "///2/641", "///2/643" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -88.786, "beta": 140.063, "gamma": 118.704, "delta": 80.473, "epsilon": -130.899, "zeta": -132.490, "epsilon_zeta": 1.591, "bb_type": "--", "chi": -151.888, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.801, 0.017 ], "P_xyz": [ -0.230, 9.609, -2.110 ], "form": ".", "ssZp": 4.028, "Dp": 4.671, "splay_angle": 62.987, "splay_distance": 9.904, "splay_ratio": 0.522, "d22": null, "d64": null, "eta": -173.865, "theta": 135.484, "eta_prime": -148.948, "theta_prime": 138.397, "eta_base": -115.473, "theta_base": 139.244, "v0": -0.238, "v1": -22.235, "v2": 34.978, "v3": -36.084, "v4": 22.922, "amplitude": 36.987, "phase_angle": 18.972, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 219.210, 165.319, 207.643 ], "x_axis": [ -0.648, -0.584, 0.489 ], "y_axis": [ -0.314, -0.380, -0.870 ], "z_axis": [ 0.694, -0.717, 0.063 ], "quaternion": [ -0.094, 0.409, -0.549, 0.723 ] } }, { "index": 567, "index_chain": 567, "chain_name": "2", "nt_resnum": 643, "nt_name": "A", "nt_code": "A", "nt_id": "///2/643", "linked_nts": [ "///2/642", "///2/644" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -78.843, "beta": 95.454, "gamma": 161.070, "delta": 148.872, "epsilon": -83.819, "zeta": 129.086, "epsilon_zeta": 147.095, "bb_type": "BII", "chi": -105.800, "glyco_bond": "anti", "C5prime_xyz": [ -2.326, 8.212, -1.844 ], "P_xyz": [ -2.509, 8.076, -4.460 ], "form": ".", "ssZp": 0.446, "Dp": 0.467, "splay_angle": 51.247, "splay_distance": 8.273, "splay_ratio": 0.435, "d22": null, "d64": null, "eta": -56.518, "theta": 72.561, "eta_prime": -97.670, "theta_prime": 100.348, "eta_base": -134.546, "theta_base": 150.154, "v0": -22.689, "v1": 37.521, "v2": -37.119, "v3": 24.997, "v4": -1.658, "amplitude": 38.687, "phase_angle": 163.631, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 228.154, 165.870, 203.423 ], "x_axis": [ 0.495, -0.637, 0.591 ], "y_axis": [ -0.274, -0.760, -0.590 ], "z_axis": [ 0.825, 0.130, -0.550 ], "quaternion": [ -0.215, 0.837, -0.272, 0.423 ] } }, { "index": 568, "index_chain": 568, "chain_name": "2", "nt_resnum": 644, "nt_name": "G", "nt_code": "G", "nt_id": "///2/644", "linked_nts": [ "///2/643", "///2/645" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -75.922, "beta": 123.698, "gamma": 70.802, "delta": 79.181, "epsilon": -149.351, "zeta": -80.676, "epsilon_zeta": -68.675, "bb_type": "BI", "chi": -171.273, "glyco_bond": "anti", "C5prime_xyz": [ -1.761, 8.712, 1.131 ], "P_xyz": [ 0.660, 9.009, 0.181 ], "form": "A", "ssZp": 4.572, "Dp": 4.607, "splay_angle": 24.957, "splay_distance": 3.905, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": -165.978, "theta": -147.170, "eta_prime": -156.750, "theta_prime": -156.597, "eta_base": -109.325, "theta_base": -139.334, "v0": -0.586, "v1": -22.487, "v2": 35.691, "v3": -36.992, "v4": 23.691, "amplitude": 37.850, "phase_angle": 19.447, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 227.559, 171.404, 197.302 ], "x_axis": [ 0.590, -0.165, -0.790 ], "y_axis": [ -0.498, -0.845, -0.195 ], "z_axis": [ -0.636, 0.509, -0.581 ], "quaternion": [ -0.203, 0.868, -0.191, -0.411 ] } }, { "index": 569, "index_chain": 569, "chain_name": "2", "nt_resnum": 645, "nt_name": "C", "nt_code": "C", "nt_id": "///2/645", "linked_nts": [ "///2/644", "///2/646" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -68.425, "beta": 170.066, "gamma": 60.611, "delta": 80.872, "epsilon": -159.648, "zeta": -76.850, "epsilon_zeta": -82.797, "bb_type": "BI", "chi": -171.898, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.642, 1.210 ], "P_xyz": [ 1.136, 9.027, 1.492 ], "form": "A", "ssZp": 4.552, "Dp": 4.557, "splay_angle": 25.638, "splay_distance": 4.025, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 167.577, "theta": -156.573, "eta_prime": 179.114, "theta_prime": -158.322, "eta_base": -143.587, "theta_base": -149.164, "v0": 1.899, "v1": -24.139, "v2": 35.911, "v3": -35.788, "v4": 21.357, "amplitude": 37.306, "phase_angle": 15.719, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.861, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 226.410, 174.687, 195.529 ], "x_axis": [ 0.300, -0.622, -0.723 ], "y_axis": [ -0.715, -0.649, 0.261 ], "z_axis": [ -0.632, 0.439, -0.639 ], "quaternion": [ -0.055, 0.804, -0.416, -0.421 ] } }, { "index": 570, "index_chain": 570, "chain_name": "2", "nt_resnum": 646, "nt_name": "G", "nt_code": "G", "nt_id": "///2/646", "linked_nts": [ "///2/645", "///2/647" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.053, "beta": 174.134, "gamma": 62.637, "delta": 81.571, "epsilon": -153.509, "zeta": -66.184, "epsilon_zeta": -87.325, "bb_type": "BI", "chi": -174.964, "glyco_bond": "anti", "C5prime_xyz": [ -1.596, 8.609, 1.376 ], "P_xyz": [ 0.938, 9.049, 1.903 ], "form": "A", "ssZp": 4.525, "Dp": 4.555, "splay_angle": 22.507, "splay_distance": 3.555, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 172.668, "theta": -141.668, "eta_prime": -178.450, "theta_prime": -141.139, "eta_base": -156.649, "theta_base": -111.279, "v0": 0.720, "v1": -22.685, "v2": 34.729, "v3": -35.275, "v4": 21.807, "amplitude": 36.412, "phase_angle": 17.489, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.792, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 225.998, 178.294, 193.789 ], "x_axis": [ 0.049, -0.837, -0.545 ], "y_axis": [ -0.757, -0.387, 0.526 ], "z_axis": [ -0.652, 0.387, -0.652 ], "quaternion": [ 0.048, 0.723, -0.551, -0.414 ] } }, { "index": 571, "index_chain": 571, "chain_name": "2", "nt_resnum": 647, "nt_name": "U", "nt_code": "U", "nt_id": "///2/647", "linked_nts": [ "///2/646", "///2/648" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -75.694, "beta": -173.556, "gamma": 54.789, "delta": 83.206, "epsilon": -158.034, "zeta": -74.779, "epsilon_zeta": -83.255, "bb_type": "BI", "chi": -159.931, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.715, 0.540 ], "P_xyz": [ 1.148, 9.148, 1.118 ], "form": "A", "ssZp": 4.345, "Dp": 4.507, "splay_angle": 23.264, "splay_distance": 3.653, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 167.077, "theta": -153.114, "eta_prime": -178.648, "theta_prime": -150.726, "eta_base": -133.470, "theta_base": -131.075, "v0": 2.192, "v1": -23.202, "v2": 34.167, "v3": -33.849, "v4": 19.993, "amplitude": 35.396, "phase_angle": 15.138, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.843, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 225.236, 179.252, 190.451 ], "x_axis": [ -0.401, -0.914, -0.057 ], "y_axis": [ -0.650, 0.241, 0.721 ], "z_axis": [ -0.645, 0.326, -0.691 ], "quaternion": [ -0.193, -0.512, 0.764, 0.343 ] } }, { "index": 572, "index_chain": 572, "chain_name": "2", "nt_resnum": 648, "nt_name": "A", "nt_code": "A", "nt_id": "///2/648", "linked_nts": [ "///2/647", "///2/649" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.036, "beta": -176.642, "gamma": 48.546, "delta": 84.147, "epsilon": -171.140, "zeta": -84.275, "epsilon_zeta": -86.866, "bb_type": "BI", "chi": -146.760, "glyco_bond": "anti", "C5prime_xyz": [ -1.074, 8.687, -0.209 ], "P_xyz": [ 1.515, 9.010, 0.080 ], "form": ".", "ssZp": 4.002, "Dp": 4.398, "splay_angle": 23.680, "splay_distance": 3.762, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 172.498, "theta": -131.692, "eta_prime": -176.868, "theta_prime": -133.608, "eta_base": -148.356, "theta_base": -96.447, "v0": 3.704, "v1": -23.762, "v2": 33.686, "v3": -32.506, "v4": 18.225, "amplitude": 34.523, "phase_angle": 12.648, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.874, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 224.003, 180.115, 187.122 ], "x_axis": [ -0.629, -0.689, 0.360 ], "y_axis": [ -0.434, 0.695, 0.573 ], "z_axis": [ -0.645, 0.205, -0.736 ], "quaternion": [ -0.287, -0.321, 0.875, 0.222 ] } }, { "index": 573, "index_chain": 573, "chain_name": "2", "nt_resnum": 649, "nt_name": "U", "nt_code": "U", "nt_id": "///2/649", "linked_nts": [ "///2/648", "///2/650" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 164.892, "beta": -132.024, "gamma": 152.146, "delta": 81.693, "epsilon": -111.683, "zeta": -97.725, "epsilon_zeta": -13.958, "bb_type": "--", "chi": -160.997, "glyco_bond": "anti", "C5prime_xyz": [ -1.327, 8.686, 0.600 ], "P_xyz": [ 0.673, 9.027, -1.057 ], "form": "A", "ssZp": 4.230, "Dp": 4.740, "splay_angle": 24.208, "splay_distance": 3.865, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 166.513, "theta": -145.191, "eta_prime": -172.824, "theta_prime": -149.466, "eta_base": -120.059, "theta_base": -131.639, "v0": 3.115, "v1": -24.652, "v2": 35.635, "v3": -34.855, "v4": 20.028, "amplitude": 36.708, "phase_angle": 13.887, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.057, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 220.664, 179.484, 185.506 ], "x_axis": [ -0.791, -0.145, 0.594 ], "y_axis": [ -0.107, 0.989, 0.099 ], "z_axis": [ -0.602, 0.015, -0.798 ], "quaternion": [ -0.316, -0.067, 0.946, 0.030 ] } }, { "index": 574, "index_chain": 574, "chain_name": "2", "nt_resnum": 650, "nt_name": "A", "nt_code": "A", "nt_id": "///2/650", "linked_nts": [ "///2/649", "///2/651" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -64.492, "beta": 161.104, "gamma": 42.744, "delta": 81.190, "epsilon": -140.232, "zeta": -78.878, "epsilon_zeta": -61.353, "bb_type": "BI", "chi": -164.442, "glyco_bond": "anti", "C5prime_xyz": [ -1.327, 8.653, 0.798 ], "P_xyz": [ 1.259, 8.901, 1.149 ], "form": "A", "ssZp": 4.514, "Dp": 4.686, "splay_angle": 25.852, "splay_distance": 4.011, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 151.028, "theta": -140.746, "eta_prime": 161.660, "theta_prime": -137.363, "eta_base": -165.544, "theta_base": -102.542, "v0": 2.911, "v1": -24.720, "v2": 35.947, "v3": -35.258, "v4": 20.409, "amplitude": 37.083, "phase_angle": 14.221, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.187, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 217.660, 178.992, 183.125 ], "x_axis": [ -0.091, 0.338, 0.937 ], "y_axis": [ 0.310, 0.904, -0.296 ], "z_axis": [ -0.946, 0.263, -0.187 ], "quaternion": [ 0.637, -0.219, -0.739, 0.011 ] } }, { "index": 575, "index_chain": 575, "chain_name": "2", "nt_resnum": 651, "nt_name": "U", "nt_code": "U", "nt_id": "///2/651", "linked_nts": [ "///2/650", "///2/652" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -53.160, "beta": 159.722, "gamma": 55.607, "delta": 80.902, "epsilon": -150.885, "zeta": -89.882, "epsilon_zeta": -61.003, "bb_type": "BI", "chi": -162.033, "glyco_bond": "anti", "C5prime_xyz": [ -1.324, 8.685, 0.655 ], "P_xyz": [ 1.280, 8.938, 0.498 ], "form": ".", "ssZp": 4.483, "Dp": 4.635, "splay_angle": 24.583, "splay_distance": 3.890, "splay_ratio": 0.215, "d22": 5.040, "d64": 5.098, "eta": 169.113, "theta": -160.600, "eta_prime": -172.125, "theta_prime": -162.962, "eta_base": -120.220, "theta_base": -167.219, "v0": 3.350, "v1": -25.343, "v2": 36.524, "v3": -35.588, "v4": 20.327, "amplitude": 37.580, "phase_angle": 13.613, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.795, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 213.957, 179.969, 184.320 ], "x_axis": [ 0.137, 0.828, 0.544 ], "y_axis": [ 0.245, 0.503, -0.829 ], "z_axis": [ -0.960, 0.247, -0.134 ], "quaternion": [ 0.614, -0.438, -0.612, 0.237 ] } }, { "index": 576, "index_chain": 576, "chain_name": "2", "nt_resnum": 652, "nt_name": "U", "nt_code": "U", "nt_id": "///2/652", "linked_nts": [ "///2/651", "///2/653" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -60.429, "beta": 166.425, "gamma": 53.170, "delta": 79.888, "epsilon": -141.945, "zeta": -86.035, "epsilon_zeta": -55.910, "bb_type": "BI", "chi": -156.505, "glyco_bond": "anti", "C5prime_xyz": [ -1.477, 8.768, 0.301 ], "P_xyz": [ 1.094, 9.249, 0.190 ], "form": "A", "ssZp": 4.308, "Dp": 4.675, "splay_angle": 22.417, "splay_distance": 3.539, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 170.360, "theta": -153.099, "eta_prime": 174.295, "theta_prime": -152.391, "eta_base": 179.015, "theta_base": -134.540, "v0": 1.530, "v1": -24.125, "v2": 36.277, "v3": -36.401, "v4": 21.978, "amplitude": 37.803, "phase_angle": 16.336, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.732, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 210.552, 178.121, 184.677 ], "x_axis": [ 0.285, 0.899, 0.333 ], "y_axis": [ 0.034, 0.338, -0.941 ], "z_axis": [ -0.958, 0.280, 0.066 ], "quaternion": [ 0.650, -0.469, -0.497, 0.333 ] } }, { "index": 577, "index_chain": 577, "chain_name": "2", "nt_resnum": 653, "nt_name": "A", "nt_code": "A", "nt_id": "///2/653", "linked_nts": [ "///2/652", "///2/654" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate", "alpha": -66.566, "beta": 167.127, "gamma": 54.195, "delta": 82.004, "epsilon": -137.581, "zeta": -68.511, "epsilon_zeta": -69.070, "bb_type": "BI", "chi": -160.643, "glyco_bond": "anti", "C5prime_xyz": [ -1.325, 8.694, 0.572 ], "P_xyz": [ 1.275, 9.023, 0.630 ], "form": ".", "ssZp": 4.403, "Dp": 4.683, "splay_angle": 32.774, "splay_distance": 5.101, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 165.781, "theta": -129.960, "eta_prime": 173.474, "theta_prime": -125.697, "eta_base": -158.881, "theta_base": -84.856, "v0": 2.828, "v1": -24.447, "v2": 35.541, "v3": -34.916, "v4": 20.254, "amplitude": 36.678, "phase_angle": 14.307, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.819, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 207.389, 178.989, 186.005 ], "x_axis": [ 0.594, 0.783, -0.183 ], "y_axis": [ -0.188, -0.086, -0.978 ], "z_axis": [ -0.782, 0.616, 0.097 ], "quaternion": [ 0.634, -0.629, -0.236, 0.383 ] } }, { "index": 578, "index_chain": 578, "chain_name": "2", "nt_resnum": 654, "nt_name": "A", "nt_code": "A", "nt_id": "///2/654", "linked_nts": [ "///2/653", "///2/655" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": -60.104, "beta": 163.744, "gamma": 62.332, "delta": 81.761, "epsilon": -149.377, "zeta": 48.883, "epsilon_zeta": 161.740, "bb_type": "--", "chi": -156.151, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.701, 0.293 ], "P_xyz": [ 1.311, 8.941, -0.166 ], "form": ".", "ssZp": 4.339, "Dp": 4.652, "splay_angle": 20.451, "splay_distance": 3.180, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 170.027, "theta": -26.284, "eta_prime": -165.052, "theta_prime": -56.009, "eta_base": -104.845, "theta_base": -121.663, "v0": 3.793, "v1": -25.435, "v2": 36.224, "v3": -35.037, "v4": 19.724, "amplitude": 37.162, "phase_angle": 12.900, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.804, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 206.240, 183.872, 185.081 ], "x_axis": [ 0.232, 0.438, -0.868 ], "y_axis": [ -0.641, -0.603, -0.475 ], "z_axis": [ -0.732, 0.666, 0.141 ], "quaternion": [ -0.439, 0.651, -0.078, -0.615 ] } }, { "index": 579, "index_chain": 579, "chain_name": "2", "nt_resnum": 655, "nt_name": "A", "nt_code": "A", "nt_id": "///2/655", "linked_nts": [ "///2/654", "///2/656" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -115.952, "beta": -175.100, "gamma": -57.766, "delta": 148.586, "epsilon": -98.306, "zeta": 119.323, "epsilon_zeta": 142.371, "bb_type": "--", "chi": 51.468, "glyco_bond": "syn", "C5prime_xyz": [ -5.334, 3.618, 0.710 ], "P_xyz": [ -7.562, 2.287, 0.341 ], "form": ".", "ssZp": -0.856, "Dp": 0.877, "splay_angle": 143.082, "splay_distance": 18.785, "splay_ratio": 0.949, "d22": null, "d64": null, "eta": 67.506, "theta": 118.616, "eta_prime": 108.664, "theta_prime": 90.444, "eta_base": 93.225, "theta_base": 64.509, "v0": -19.619, "v1": 34.741, "v2": -35.743, "v3": 25.322, "v4": -3.791, "amplitude": 36.672, "phase_angle": 167.074, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 203.911, 186.031, 184.914 ], "x_axis": [ 0.701, 0.684, -0.204 ], "y_axis": [ -0.300, 0.023, -0.954 ], "z_axis": [ -0.647, 0.729, 0.221 ], "quaternion": [ 0.697, -0.603, -0.159, 0.353 ] } }, { "index": 580, "index_chain": 580, "chain_name": "2", "nt_resnum": 656, "nt_name": "G", "nt_code": "G", "nt_id": "///2/656", "linked_nts": [ "///2/655", "///2/657" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,cap-acceptor,splayed-apart", "alpha": 45.116, "beta": -159.191, "gamma": 48.242, "delta": 143.732, "epsilon": -120.649, "zeta": 64.889, "epsilon_zeta": 174.462, "bb_type": "--", "chi": -100.407, "glyco_bond": "anti", "C5prime_xyz": [ -2.301, 8.139, -2.146 ], "P_xyz": [ -0.140, 9.619, -1.969 ], "form": ".", "ssZp": 1.247, "Dp": 1.450, "splay_angle": 159.927, "splay_distance": 19.042, "splay_ratio": 0.985, "d22": null, "d64": null, "eta": -7.932, "theta": 91.764, "eta_prime": -8.274, "theta_prime": 54.127, "eta_base": 21.456, "theta_base": -27.032, "v0": -22.501, "v1": 35.413, "v2": -34.158, "v3": 22.046, "v4": 0.079, "amplitude": 36.100, "phase_angle": 161.123, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.220, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 188.405, 180.781, 175.701 ], "x_axis": [ 0.008, -0.994, 0.109 ], "y_axis": [ 0.874, 0.060, 0.482 ], "z_axis": [ -0.486, 0.092, 0.869 ], "quaternion": [ 0.696, 0.140, -0.214, -0.671 ] } }, { "index": 581, "index_chain": 581, "chain_name": "2", "nt_resnum": 657, "nt_name": "U", "nt_code": "U", "nt_id": "///2/657", "linked_nts": [ "///2/656", "///2/658" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 66.722, "beta": 134.547, "gamma": 78.000, "delta": 81.117, "epsilon": -141.470, "zeta": 169.780, "epsilon_zeta": 48.750, "bb_type": "--", "chi": -158.364, "glyco_bond": "anti", "C5prime_xyz": [ -1.476, 8.764, 0.412 ], "P_xyz": [ 0.764, 8.969, -0.932 ], "form": ".", "ssZp": 4.349, "Dp": 4.651, "splay_angle": 104.804, "splay_distance": 14.729, "splay_ratio": 0.792, "d22": 9.025, "d64": 11.313, "eta": -35.036, "theta": 99.958, "eta_prime": -12.257, "theta_prime": 108.021, "eta_base": 78.311, "theta_base": 109.384, "v0": 1.114, "v1": -23.346, "v2": 35.424, "v3": -35.766, "v4": 21.844, "amplitude": 37.025, "phase_angle": 16.913, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6d", "suiteness": 0.085, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 202.548, 189.381, 185.115 ], "x_axis": [ -0.273, -0.722, 0.636 ], "y_axis": [ -0.720, -0.285, -0.633 ], "z_axis": [ 0.638, -0.631, -0.442 ], "quaternion": [ -0.001, 0.603, -0.598, 0.528 ] } }, { "index": 582, "index_chain": 582, "chain_name": "2", "nt_resnum": 658, "nt_name": "U", "nt_code": "U", "nt_id": "///2/658", "linked_nts": [ "///2/657", "///2/659" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,splayed-apart", "alpha": -67.042, "beta": 162.576, "gamma": 44.515, "delta": 145.054, "epsilon": -77.397, "zeta": 89.823, "epsilon_zeta": 192.780, "bb_type": "--", "chi": -132.027, "glyco_bond": "anti", "C5prime_xyz": [ -1.993, 8.699, -0.628 ], "P_xyz": [ 0.289, 9.483, 0.394 ], "form": "Z", "ssZp": 0.324, "Dp": 0.368, "splay_angle": 34.919, "splay_distance": 5.814, "splay_ratio": 0.338, "d22": null, "d64": null, "eta": -149.281, "theta": 113.179, "eta_prime": -152.086, "theta_prime": 76.530, "eta_base": 176.254, "theta_base": 63.702, "v0": -22.977, "v1": 36.433, "v2": -35.272, "v3": 22.941, "v4": -0.199, "amplitude": 37.189, "phase_angle": 161.525, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.845, "filter_rmsd": 0.103, "frame": { "rmsd": 0.002, "origin": [ 201.972, 194.063, 171.162 ], "x_axis": [ 0.182, 0.534, 0.826 ], "y_axis": [ -0.184, -0.807, 0.562 ], "z_axis": [ 0.966, -0.254, -0.049 ], "quaternion": [ 0.286, 0.714, 0.123, 0.627 ] } }, { "index": 583, "index_chain": 583, "chain_name": "2", "nt_resnum": 659, "nt_name": "G", "nt_code": "G", "nt_id": "///2/659", "linked_nts": [ "///2/658", "///2/660" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-acceptor,splayed-apart", "alpha": 175.885, "beta": 168.724, "gamma": 61.719, "delta": 82.388, "epsilon": -103.831, "zeta": 139.144, "epsilon_zeta": 117.025, "bb_type": "BII", "chi": 97.406, "glyco_bond": "--", "C5prime_xyz": [ -4.101, 5.556, 3.170 ], "P_xyz": [ -3.083, 4.072, 5.077 ], "form": ".", "ssZp": 1.310, "Dp": 4.521, "splay_angle": 120.368, "splay_distance": 14.857, "splay_ratio": 0.868, "d22": null, "d64": null, "eta": 114.457, "theta": 116.078, "eta_prime": 106.235, "theta_prime": 85.194, "eta_base": 110.857, "theta_base": 19.359, "v0": -1.918, "v1": -19.925, "v2": 32.850, "v3": -34.898, "v4": 23.248, "amplitude": 35.344, "phase_angle": 21.654, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.306, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 197.561, 190.758, 173.009 ], "x_axis": [ 0.267, 0.213, 0.940 ], "y_axis": [ -0.375, -0.875, 0.305 ], "z_axis": [ 0.888, -0.434, -0.154 ], "quaternion": [ 0.244, 0.758, -0.053, 0.603 ] } }, { "index": 584, "index_chain": 584, "chain_name": "2", "nt_resnum": 660, "nt_name": "C", "nt_code": "C", "nt_id": "///2/660", "linked_nts": [ "///2/659", "///2/661" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 88.950, "beta": -165.402, "gamma": 80.515, "delta": 82.439, "epsilon": -120.233, "zeta": -77.764, "epsilon_zeta": -42.469, "bb_type": "--", "chi": -164.321, "glyco_bond": "anti", "C5prime_xyz": [ -1.311, 8.736, 0.779 ], "P_xyz": [ 1.296, 9.033, 0.889 ], "form": ".", "ssZp": 4.392, "Dp": 4.701, "splay_angle": 20.926, "splay_distance": 3.360, "splay_ratio": 0.182, "d22": 4.028, "d64": 3.244, "eta": 54.846, "theta": -126.012, "eta_prime": 63.010, "theta_prime": -124.683, "eta_base": 124.965, "theta_base": -83.651, "v0": 1.828, "v1": -23.416, "v2": 34.858, "v3": -34.775, "v4": 20.785, "amplitude": 36.223, "phase_angle": 15.779, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 198.358, 176.746, 168.135 ], "x_axis": [ 0.594, 0.397, 0.700 ], "y_axis": [ -0.332, 0.913, -0.237 ], "z_axis": [ -0.733, -0.092, 0.674 ], "quaternion": [ 0.892, -0.041, -0.402, 0.204 ] } }, { "index": 585, "index_chain": 585, "chain_name": "2", "nt_resnum": 661, "nt_name": "U", "nt_code": "U", "nt_id": "///2/661", "linked_nts": [ "///2/660", "///2/662" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate", "alpha": -72.662, "beta": 163.156, "gamma": 60.397, "delta": 81.729, "epsilon": -138.592, "zeta": 42.643, "epsilon_zeta": 178.764, "bb_type": "--", "chi": -145.003, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.766, -0.385 ], "P_xyz": [ 1.012, 9.124, -1.039 ], "form": ".", "ssZp": 3.810, "Dp": 4.637, "splay_angle": 23.182, "splay_distance": 3.738, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 155.885, "theta": -23.496, "eta_prime": 176.188, "theta_prime": -63.887, "eta_base": -127.039, "theta_base": -110.855, "v0": 0.646, "v1": -22.420, "v2": 34.397, "v3": -35.005, "v4": 21.683, "amplitude": 36.090, "phase_angle": 17.620, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.526, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 197.851, 177.581, 171.350 ], "x_axis": [ 0.388, 0.910, 0.147 ], "y_axis": [ -0.841, 0.414, -0.348 ], "z_axis": [ -0.378, 0.011, 0.926 ], "quaternion": [ 0.826, -0.109, -0.159, 0.530 ] } }, { "index": 586, "index_chain": 586, "chain_name": "2", "nt_resnum": 662, "nt_name": "G", "nt_code": "G", "nt_id": "///2/662", "linked_nts": [ "///2/661", "///2/663" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-donor,phosphate,splayed-apart", "alpha": 173.581, "beta": 143.079, "gamma": 50.323, "delta": 147.820, "epsilon": -81.352, "zeta": 133.379, "epsilon_zeta": 145.269, "bb_type": "BII", "chi": -126.615, "glyco_bond": "anti", "C5prime_xyz": [ -1.951, 8.681, -0.844 ], "P_xyz": [ 0.593, 8.942, -0.242 ], "form": ".", "ssZp": 0.389, "Dp": 0.425, "splay_angle": 102.280, "splay_distance": 14.635, "splay_ratio": 0.780, "d22": null, "d64": null, "eta": 58.643, "theta": 166.893, "eta_prime": 123.639, "theta_prime": 150.197, "eta_base": 113.533, "theta_base": -178.491, "v0": -21.994, "v1": 36.498, "v2": -36.201, "v3": 24.473, "v4": -1.773, "amplitude": 37.686, "phase_angle": 163.859, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.782, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 196.982, 179.432, 174.480 ], "x_axis": [ -0.024, -1.000, 0.007 ], "y_axis": [ -0.939, 0.020, -0.345 ], "z_axis": [ 0.344, -0.014, -0.939 ], "quaternion": [ 0.120, -0.688, 0.704, -0.127 ] } }, { "index": 587, "index_chain": 587, "chain_name": "2", "nt_resnum": 663, "nt_name": "C", "nt_code": "C", "nt_id": "///2/663", "linked_nts": [ "///2/662", "///2/664" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate,splayed-apart", "alpha": -43.622, "beta": 164.755, "gamma": 53.490, "delta": 82.392, "epsilon": -151.148, "zeta": -37.117, "epsilon_zeta": -114.031, "bb_type": "BI", "chi": -174.406, "glyco_bond": "anti", "C5prime_xyz": [ -1.062, 8.454, 1.403 ], "P_xyz": [ 1.530, 8.414, 1.749 ], "form": ".", "ssZp": 4.644, "Dp": 4.655, "splay_angle": 22.589, "splay_distance": 4.139, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": -117.106, "theta": -108.635, "eta_prime": -122.838, "theta_prime": -122.046, "eta_base": -108.318, "theta_base": -107.063, "v0": 6.061, "v1": -27.034, "v2": 36.622, "v3": -34.123, "v4": 17.732, "amplitude": 37.125, "phase_angle": 9.450, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.182, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 193.787, 193.418, 171.590 ], "x_axis": [ -0.046, -0.140, -0.989 ], "y_axis": [ -0.268, -0.952, 0.147 ], "z_axis": [ -0.962, 0.272, 0.006 ], "quaternion": [ 0.045, -0.689, 0.148, 0.708 ] } }, { "index": 588, "index_chain": 588, "chain_name": "2", "nt_resnum": 664, "nt_name": "A", "nt_code": "A", "nt_id": "///2/664", "linked_nts": [ "///2/663", "///2/665" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor", "alpha": -161.437, "beta": 147.922, "gamma": 151.260, "delta": 82.416, "epsilon": -135.545, "zeta": -68.339, "epsilon_zeta": -67.206, "bb_type": "BI", "chi": 172.910, "glyco_bond": "anti", "C5prime_xyz": [ -1.588, 8.168, 2.044 ], "P_xyz": [ -0.249, 10.312, 1.319 ], "form": "A", "ssZp": 4.652, "Dp": 4.701, "splay_angle": 19.714, "splay_distance": 3.374, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 162.195, "theta": -162.849, "eta_prime": -179.047, "theta_prime": -156.077, "eta_base": -135.742, "theta_base": -124.669, "v0": 3.969, "v1": -25.197, "v2": 35.659, "v3": -34.357, "v4": 19.171, "amplitude": 36.527, "phase_angle": 12.516, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.051, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 191.749, 196.328, 169.467 ], "x_axis": [ -0.085, -0.607, -0.790 ], "y_axis": [ -0.266, -0.751, 0.605 ], "z_axis": [ -0.960, 0.261, -0.097 ], "quaternion": [ 0.129, 0.664, -0.329, -0.659 ] } }, { "index": 589, "index_chain": 589, "chain_name": "2", "nt_resnum": 665, "nt_name": "G", "nt_code": "G", "nt_id": "///2/665", "linked_nts": [ "///2/664", "///2/666" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart", "alpha": -75.953, "beta": -172.690, "gamma": 53.539, "delta": 82.982, "epsilon": -142.018, "zeta": -172.553, "epsilon_zeta": 30.535, "bb_type": "--", "chi": -149.772, "glyco_bond": "anti", "C5prime_xyz": [ -1.609, 8.881, -0.091 ], "P_xyz": [ 0.868, 9.669, 0.279 ], "form": ".", "ssZp": 3.973, "Dp": 4.505, "splay_angle": 166.781, "splay_distance": 18.427, "splay_ratio": 0.993, "d22": null, "d64": null, "eta": 165.175, "theta": 138.949, "eta_prime": 179.971, "theta_prime": 117.241, "eta_base": -140.682, "theta_base": 6.619, "v0": -2.132, "v1": -19.274, "v2": 32.032, "v3": -34.170, "v4": 22.911, "amplitude": 34.561, "phase_angle": 22.054, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.798, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 190.011, 197.664, 166.902 ], "x_axis": [ -0.186, -0.959, -0.212 ], "y_axis": [ -0.362, -0.134, 0.922 ], "z_axis": [ -0.913, 0.249, -0.323 ], "quaternion": [ -0.299, -0.564, 0.586, 0.499 ] } }, { "index": 590, "index_chain": 590, "chain_name": "2", "nt_resnum": 666, "nt_name": "U", "nt_code": "U", "nt_id": "///2/666", "linked_nts": [ "///2/665", "///2/667" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,cap-donor,splayed-apart", "alpha": 68.969, "beta": -169.515, "gamma": 67.901, "delta": 86.677, "epsilon": -154.889, "zeta": -67.635, "epsilon_zeta": -87.254, "bb_type": "BI", "chi": -171.209, "glyco_bond": "anti", "C5prime_xyz": [ -1.335, 8.582, 1.216 ], "P_xyz": [ 1.149, 8.696, 2.065 ], "form": "A", "ssZp": 4.309, "Dp": 4.406, "splay_angle": 23.079, "splay_distance": 3.604, "splay_ratio": 0.200, "d22": 4.772, "d64": 4.307, "eta": -11.793, "theta": -139.107, "eta_prime": -8.483, "theta_prime": -137.978, "eta_base": 100.980, "theta_base": -108.815, "v0": 1.116, "v1": -20.432, "v2": 30.823, "v3": -31.067, "v4": 18.927, "amplitude": 32.179, "phase_angle": 16.692, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.423, "filter_rmsd": 0.107, "frame": { "rmsd": 0.007, "origin": [ 179.060, 201.294, 181.271 ], "x_axis": [ -0.197, -0.967, -0.163 ], "y_axis": [ 0.376, 0.079, -0.923 ], "z_axis": [ 0.906, -0.243, 0.348 ], "quaternion": [ 0.554, -0.307, 0.482, -0.605 ] } }, { "index": 591, "index_chain": 591, "chain_name": "2", "nt_resnum": 667, "nt_name": "U", "nt_code": "U", "nt_id": "///2/667", "linked_nts": [ "///2/666", "///2/668" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -76.428, "beta": -171.987, "gamma": 51.163, "delta": 86.341, "epsilon": -98.803, "zeta": -102.554, "epsilon_zeta": 3.751, "bb_type": "--", "chi": -152.591, "glyco_bond": "anti", "C5prime_xyz": [ -1.150, 8.665, 0.141 ], "P_xyz": [ 1.422, 8.901, 0.656 ], "form": ".", "ssZp": 3.673, "Dp": 4.656, "splay_angle": 40.068, "splay_distance": 7.038, "splay_ratio": 0.345, "d22": null, "d64": null, "eta": -178.893, "theta": -95.006, "eta_prime": -169.551, "theta_prime": -102.361, "eta_base": -133.751, "theta_base": -101.259, "v0": 4.470, "v1": -23.938, "v2": 33.241, "v3": -31.593, "v4": 17.145, "amplitude": 33.891, "phase_angle": 11.240, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.757, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 181.677, 200.007, 183.388 ], "x_axis": [ 0.070, -0.702, -0.709 ], "y_axis": [ 0.442, 0.659, -0.609 ], "z_axis": [ 0.894, -0.271, 0.356 ], "quaternion": [ 0.722, -0.117, 0.555, -0.396 ] } }, { "index": 592, "index_chain": 592, "chain_name": "2", "nt_resnum": 668, "nt_name": "A", "nt_code": "A", "nt_id": "///2/668", "linked_nts": [ "///2/667", "///2/669" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,cap-acceptor", "alpha": 59.846, "beta": 165.625, "gamma": -71.233, "delta": 82.142, "epsilon": -104.185, "zeta": -98.666, "epsilon_zeta": -5.519, "bb_type": "--", "chi": -92.299, "glyco_bond": "anti", "C5prime_xyz": [ -2.435, 7.399, -2.922 ], "P_xyz": [ -1.950, 9.443, -4.490 ], "form": ".", "ssZp": -0.556, "Dp": 4.664, "splay_angle": 49.330, "splay_distance": 8.168, "splay_ratio": 0.420, "d22": null, "d64": null, "eta": 148.586, "theta": -162.988, "eta_prime": 161.702, "theta_prime": -153.223, "eta_base": 172.982, "theta_base": -144.586, "v0": 0.798, "v1": -22.488, "v2": 34.354, "v3": -34.884, "v4": 21.528, "amplitude": 36.000, "phase_angle": 17.397, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 187.588, 196.211, 183.813 ], "x_axis": [ -0.133, -0.420, -0.898 ], "y_axis": [ 0.494, 0.757, -0.427 ], "z_axis": [ 0.859, -0.501, 0.107 ], "quaternion": [ 0.658, 0.028, 0.668, -0.348 ] } }, { "index": 593, "index_chain": 593, "chain_name": "2", "nt_resnum": 669, "nt_name": "A", "nt_code": "A", "nt_id": "///2/669", "linked_nts": [ "///2/668", "///2/670" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,A-minor,ribose-zipper", "alpha": -112.041, "beta": -172.024, "gamma": 59.029, "delta": 83.086, "epsilon": -96.378, "zeta": -112.963, "epsilon_zeta": 16.586, "bb_type": "--", "chi": -152.349, "glyco_bond": "anti", "C5prime_xyz": [ -1.267, 8.711, 0.073 ], "P_xyz": [ 1.327, 9.076, 0.200 ], "form": ".", "ssZp": 3.642, "Dp": 4.703, "splay_angle": 23.353, "splay_distance": 3.952, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 145.326, "theta": -134.149, "eta_prime": 153.571, "theta_prime": -123.032, "eta_base": 150.211, "theta_base": -75.373, "v0": 3.102, "v1": -24.377, "v2": 35.166, "v3": -34.336, "v4": 19.723, "amplitude": 36.211, "phase_angle": 13.798, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 193.588, 195.976, 178.275 ], "x_axis": [ -0.892, -0.098, 0.441 ], "y_axis": [ -0.000, 0.976, 0.216 ], "z_axis": [ -0.451, 0.192, -0.871 ], "quaternion": [ -0.231, -0.025, 0.967, 0.105 ] } }, { "index": 594, "index_chain": 594, "chain_name": "2", "nt_resnum": 670, "nt_name": "A", "nt_code": "A", "nt_id": "///2/670", "linked_nts": [ "///2/669", "///2/671" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,ribose-zipper,splayed-apart", "alpha": -44.945, "beta": 136.725, "gamma": 57.374, "delta": 83.585, "epsilon": -142.385, "zeta": -142.249, "epsilon_zeta": -0.136, "bb_type": "--", "chi": -107.855, "glyco_bond": "anti", "C5prime_xyz": [ -1.919, 7.967, -2.331 ], "P_xyz": [ 0.078, 7.077, -3.783 ], "form": ".", "ssZp": 1.576, "Dp": 4.622, "splay_angle": 85.391, "splay_distance": 13.941, "splay_ratio": 0.678, "d22": null, "d64": null, "eta": 166.145, "theta": -160.586, "eta_prime": -173.656, "theta_prime": -160.028, "eta_base": -122.588, "theta_base": 164.502, "v0": 2.388, "v1": -23.349, "v2": 34.259, "v3": -33.838, "v4": 19.852, "amplitude": 35.443, "phase_angle": 14.849, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.545, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 190.480, 198.285, 177.478 ], "x_axis": [ -0.683, 0.449, 0.576 ], "y_axis": [ 0.097, 0.838, -0.538 ], "z_axis": [ -0.724, -0.312, -0.616 ], "quaternion": [ -0.367, 0.154, 0.886, -0.240 ] } }, { "index": 595, "index_chain": 595, "chain_name": "2", "nt_resnum": 671, "nt_name": "A", "nt_code": "A", "nt_id": "///2/671", "linked_nts": [ "///2/670", "///2/672" ], "nt_type": "RNA", "dbn": "(", "summary": "~C2'-endo,isolated-canonical,non-pair-contact,helix,junction-loop,A-minor,splayed-apart", "alpha": 80.313, "beta": 131.882, "gamma": -75.702, "delta": 146.898, "epsilon": -87.067, "zeta": 80.238, "epsilon_zeta": 192.695, "bb_type": "--", "chi": -67.308, "glyco_bond": "--", "C5prime_xyz": [ -3.331, 6.674, -3.044 ], "P_xyz": [ -3.624, 8.967, -4.293 ], "form": ".", "ssZp": 0.100, "Dp": 0.501, "splay_angle": 37.087, "splay_distance": 6.110, "splay_ratio": 0.324, "d22": null, "d64": null, "eta": -171.460, "theta": 104.609, "eta_prime": 173.194, "theta_prime": 103.052, "eta_base": 143.465, "theta_base": 130.142, "v0": -22.059, "v1": 36.561, "v2": -36.326, "v3": 24.534, "v4": -1.782, "amplitude": 37.812, "phase_angle": 163.883, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.050, "filter_rmsd": 0.037, "frame": { "rmsd": 0.011, "origin": [ 187.377, 198.045, 163.889 ], "x_axis": [ -0.328, -0.791, 0.517 ], "y_axis": [ -0.155, 0.584, 0.797 ], "z_axis": [ -0.932, 0.181, -0.314 ], "quaternion": [ -0.485, -0.317, 0.746, 0.328 ] } }, { "index": 596, "index_chain": 596, "chain_name": "2", "nt_resnum": 672, "nt_name": "A", "nt_code": "A", "nt_id": "///2/672", "linked_nts": [ "///2/671", "///2/673" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,A-minor,splayed-apart", "alpha": 55.812, "beta": 146.808, "gamma": -95.234, "delta": 143.768, "epsilon": -113.969, "zeta": -43.520, "epsilon_zeta": -70.449, "bb_type": "--", "chi": 58.311, "glyco_bond": "syn", "C5prime_xyz": [ -5.449, 4.029, 1.137 ], "P_xyz": [ -8.003, 3.402, 1.319 ], "form": ".", "ssZp": -1.313, "Dp": 1.296, "splay_angle": 90.765, "splay_distance": 13.653, "splay_ratio": 0.713, "d22": null, "d64": null, "eta": -160.512, "theta": -51.658, "eta_prime": -179.077, "theta_prime": -95.467, "eta_base": -161.146, "theta_base": -136.616, "v0": -24.061, "v1": 36.862, "v2": -34.871, "v3": 21.902, "v4": 1.140, "amplitude": 37.232, "phase_angle": 159.484, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 188.559, 202.519, 159.899 ], "x_axis": [ 0.457, -0.430, -0.778 ], "y_axis": [ 0.721, 0.691, 0.042 ], "z_axis": [ 0.520, -0.581, 0.626 ], "quaternion": [ 0.833, 0.187, 0.390, -0.345 ] } }, { "index": 597, "index_chain": 597, "chain_name": "2", "nt_resnum": 673, "nt_name": "G", "nt_code": "G", "nt_id": "///2/673", "linked_nts": [ "///2/672", "///2/674" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,A-minor,cap-donor,splayed-apart", "alpha": 127.484, "beta": 164.935, "gamma": 51.621, "delta": 82.543, "epsilon": -148.853, "zeta": -73.829, "epsilon_zeta": -75.024, "bb_type": "BI", "chi": -167.132, "glyco_bond": "anti", "C5prime_xyz": [ -1.396, 8.691, 0.962 ], "P_xyz": [ 1.187, 8.976, 1.320 ], "form": "A", "ssZp": 4.509, "Dp": 4.588, "splay_angle": 23.167, "splay_distance": 3.642, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": -26.677, "theta": -143.600, "eta_prime": 36.980, "theta_prime": -143.630, "eta_base": 47.210, "theta_base": -116.041, "v0": 1.924, "v1": -23.289, "v2": 34.564, "v3": -34.426, "v4": 20.509, "amplitude": 35.888, "phase_angle": 15.611, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 188.334, 215.732, 156.471 ], "x_axis": [ 0.975, -0.080, -0.206 ], "y_axis": [ 0.167, -0.343, 0.924 ], "z_axis": [ -0.145, -0.936, -0.321 ], "quaternion": [ 0.573, 0.812, 0.027, -0.108 ] } }, { "index": 598, "index_chain": 598, "chain_name": "2", "nt_resnum": 674, "nt_name": "C", "nt_code": "C", "nt_id": "///2/674", "linked_nts": [ "///2/673", "///2/675" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate", "alpha": -67.275, "beta": 175.337, "gamma": 52.299, "delta": 81.345, "epsilon": -155.553, "zeta": -76.238, "epsilon_zeta": -79.316, "bb_type": "BI", "chi": -164.224, "glyco_bond": "anti", "C5prime_xyz": [ -1.269, 8.713, 0.788 ], "P_xyz": [ 1.305, 9.026, 1.182 ], "form": "A", "ssZp": 4.501, "Dp": 4.590, "splay_angle": 23.608, "splay_distance": 3.724, "splay_ratio": 0.206, "d22": 4.518, "d64": 4.732, "eta": 164.579, "theta": -152.908, "eta_prime": 178.213, "theta_prime": -152.876, "eta_base": -137.765, "theta_base": -138.706, "v0": 2.941, "v1": -24.849, "v2": 36.080, "v3": -35.369, "v4": 20.443, "amplitude": 37.211, "phase_angle": 14.163, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.989, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 188.413, 212.989, 154.077 ], "x_axis": [ 0.899, -0.142, 0.415 ], "y_axis": [ -0.438, -0.250, 0.863 ], "z_axis": [ -0.019, -0.958, -0.287 ], "quaternion": [ 0.584, 0.780, -0.186, 0.127 ] } }, { "index": 599, "index_chain": 599, "chain_name": "2", "nt_resnum": 675, "nt_name": "U", "nt_code": "U", "nt_id": "///2/675", "linked_nts": [ "///2/674", "///2/676" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.668, "beta": 169.700, "gamma": 57.777, "delta": 80.028, "epsilon": -154.428, "zeta": -75.666, "epsilon_zeta": -78.762, "bb_type": "BI", "chi": -166.964, "glyco_bond": "anti", "C5prime_xyz": [ -1.479, 8.677, 0.923 ], "P_xyz": [ 1.095, 9.141, 1.097 ], "form": "A", "ssZp": 4.551, "Dp": 4.604, "splay_angle": 24.801, "splay_distance": 3.869, "splay_ratio": 0.217, "d22": 4.541, "d64": 4.774, "eta": 169.770, "theta": -151.875, "eta_prime": -178.740, "theta_prime": -152.024, "eta_base": -150.804, "theta_base": -129.610, "v0": 1.902, "v1": -24.463, "v2": 36.476, "v3": -36.362, "v4": 21.714, "amplitude": 37.903, "phase_angle": 15.774, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.929, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 188.845, 210.458, 151.380 ], "x_axis": [ 0.644, -0.201, 0.738 ], "y_axis": [ -0.765, -0.197, 0.613 ], "z_axis": [ 0.022, -0.960, -0.281 ], "quaternion": [ 0.540, 0.728, -0.332, 0.261 ] } }, { "index": 600, "index_chain": 600, "chain_name": "2", "nt_resnum": 676, "nt_name": "C", "nt_code": "C", "nt_id": "///2/676", "linked_nts": [ "///2/675", "///2/677" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -62.215, "beta": 170.945, "gamma": 57.409, "delta": 80.645, "epsilon": -138.392, "zeta": -66.569, "epsilon_zeta": -71.823, "bb_type": "BI", "chi": -167.998, "glyco_bond": "anti", "C5prime_xyz": [ -1.308, 8.686, 0.997 ], "P_xyz": [ 1.281, 9.018, 1.242 ], "form": ".", "ssZp": 4.590, "Dp": 4.698, "splay_angle": 32.771, "splay_distance": 5.000, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 174.601, "theta": -130.558, "eta_prime": -175.251, "theta_prime": -125.997, "eta_base": -140.531, "theta_base": -80.015, "v0": 2.664, "v1": -24.921, "v2": 36.488, "v3": -35.930, "v4": 20.975, "amplitude": 37.711, "phase_angle": 14.633, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 190.492, 207.456, 149.580 ], "x_axis": [ 0.163, -0.253, 0.954 ], "y_axis": [ -0.987, -0.057, 0.153 ], "z_axis": [ 0.016, -0.966, -0.259 ], "quaternion": [ 0.460, 0.608, -0.510, 0.398 ] } }, { "index": 601, "index_chain": 601, "chain_name": "2", "nt_resnum": 677, "nt_name": "G", "nt_code": "G", "nt_id": "///2/677", "linked_nts": [ "///2/676", "///2/678" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -62.033, "beta": 164.557, "gamma": 60.913, "delta": 83.374, "epsilon": -152.057, "zeta": -106.894, "epsilon_zeta": -45.163, "bb_type": "BI", "chi": -166.271, "glyco_bond": "anti", "C5prime_xyz": [ -1.129, 8.604, 0.930 ], "P_xyz": [ 1.492, 8.702, 0.869 ], "form": ".", "ssZp": 4.545, "Dp": 4.625, "splay_angle": 43.888, "splay_distance": 6.804, "splay_ratio": 0.375, "d22": null, "d64": null, "eta": 167.332, "theta": -178.581, "eta_prime": -166.777, "theta_prime": -176.756, "eta_base": -98.358, "theta_base": 174.070, "v0": 5.232, "v1": -25.824, "v2": 35.475, "v3": -33.458, "v4": 17.826, "amplitude": 36.078, "phase_angle": 10.495, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.846, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 190.425, 202.991, 151.831 ], "x_axis": [ -0.703, -0.179, 0.688 ], "y_axis": [ -0.711, 0.169, -0.683 ], "z_axis": [ 0.006, -0.969, -0.247 ], "quaternion": [ -0.234, -0.306, 0.728, -0.567 ] } }, { "index": 602, "index_chain": 602, "chain_name": "2", "nt_resnum": 678, "nt_name": "U", "nt_code": "U", "nt_id": "///2/678", "linked_nts": [ "///2/677", "///2/679" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -59.480, "beta": 178.992, "gamma": 44.789, "delta": 81.466, "epsilon": -159.355, "zeta": -74.651, "epsilon_zeta": -84.703, "bb_type": "BI", "chi": -156.736, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.739, 0.337 ], "P_xyz": [ 1.149, 9.268, 0.822 ], "form": ".", "ssZp": 4.319, "Dp": 4.535, "splay_angle": 32.124, "splay_distance": 5.253, "splay_ratio": 0.280, "d22": null, "d64": null, "eta": 175.701, "theta": -123.240, "eta_prime": 169.317, "theta_prime": -128.556, "eta_base": 158.337, "theta_base": -98.961, "v0": 2.124, "v1": -23.744, "v2": 35.152, "v3": -34.936, "v4": 20.699, "amplitude": 36.458, "phase_angle": 15.384, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.254, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 195.793, 200.219, 148.703 ], "x_axis": [ -0.608, 0.086, 0.790 ], "y_axis": [ -0.785, 0.086, -0.614 ], "z_axis": [ -0.120, -0.993, 0.016 ], "quaternion": [ -0.351, -0.270, 0.648, -0.620 ] } }, { "index": 603, "index_chain": 603, "chain_name": "2", "nt_resnum": 679, "nt_name": "A", "nt_code": "A", "nt_id": "///2/679", "linked_nts": [ "///2/678", "///2/680" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 158.178, "beta": -153.818, "gamma": 170.574, "delta": 81.834, "epsilon": -114.413, "zeta": -64.016, "epsilon_zeta": -50.397, "bb_type": "--", "chi": 163.957, "glyco_bond": "anti", "C5prime_xyz": [ -1.706, 7.902, 2.466 ], "P_xyz": [ 0.298, 9.560, 2.153 ], "form": ".", "ssZp": 4.678, "Dp": 4.750, "splay_angle": 33.300, "splay_distance": 5.100, "splay_ratio": 0.290, "d22": null, "d64": null, "eta": 166.530, "theta": -129.538, "eta_prime": -175.149, "theta_prime": -125.644, "eta_base": -123.813, "theta_base": -68.046, "v0": 3.993, "v1": -25.453, "v2": 36.089, "v3": -34.771, "v4": 19.404, "amplitude": 36.973, "phase_angle": 12.551, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.818, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 194.118, 196.032, 151.397 ], "x_axis": [ -0.869, 0.434, 0.237 ], "y_axis": [ -0.157, 0.212, -0.965 ], "z_axis": [ -0.469, -0.876, -0.116 ], "quaternion": [ -0.238, 0.093, 0.741, -0.621 ] } }, { "index": 604, "index_chain": 604, "chain_name": "2", "nt_resnum": 680, "nt_name": "G", "nt_code": "G", "nt_id": "///2/680", "linked_nts": [ "///2/679", "///2/681" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -61.773, "beta": 171.999, "gamma": 45.338, "delta": 81.799, "epsilon": -142.487, "zeta": -72.774, "epsilon_zeta": -69.713, "bb_type": "BI", "chi": -165.622, "glyco_bond": "anti", "C5prime_xyz": [ -1.324, 8.686, 0.879 ], "P_xyz": [ 1.212, 9.003, 1.458 ], "form": "A", "ssZp": 4.525, "Dp": 4.661, "splay_angle": 27.024, "splay_distance": 4.234, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 152.219, "theta": -138.647, "eta_prime": -179.585, "theta_prime": -135.072, "eta_base": -98.031, "theta_base": -99.957, "v0": 3.124, "v1": -24.696, "v2": 35.695, "v3": -34.893, "v4": 20.063, "amplitude": 36.768, "phase_angle": 13.876, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.388, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 189.162, 194.896, 150.998 ], "x_axis": [ -0.464, 0.412, -0.784 ], "y_axis": [ 0.740, -0.307, -0.599 ], "z_axis": [ -0.487, -0.858, -0.163 ], "quaternion": [ -0.129, -0.501, -0.574, 0.634 ] } }, { "index": 605, "index_chain": 605, "chain_name": "2", "nt_resnum": 681, "nt_name": "U", "nt_code": "U", "nt_id": "///2/681", "linked_nts": [ "///2/680", "///2/682" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -55.524, "beta": 167.201, "gamma": 51.273, "delta": 80.188, "epsilon": -139.177, "zeta": -78.875, "epsilon_zeta": -60.302, "bb_type": "BI", "chi": -167.846, "glyco_bond": "anti", "C5prime_xyz": [ -1.436, 8.646, 0.995 ], "P_xyz": [ 1.131, 9.018, 1.357 ], "form": "A", "ssZp": 4.574, "Dp": 4.683, "splay_angle": 25.055, "splay_distance": 4.008, "splay_ratio": 0.219, "d22": 4.266, "d64": 4.474, "eta": 170.128, "theta": -142.344, "eta_prime": -173.088, "theta_prime": -139.914, "eta_base": -122.268, "theta_base": -114.896, "v0": 2.178, "v1": -24.391, "v2": 36.113, "v3": -35.863, "v4": 21.234, "amplitude": 37.451, "phase_angle": 15.359, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 185.951, 192.698, 149.327 ], "x_axis": [ 0.181, 0.228, -0.957 ], "y_axis": [ 0.885, -0.462, 0.057 ], "z_axis": [ -0.429, -0.857, -0.286 ], "quaternion": [ 0.329, 0.694, 0.401, -0.499 ] } }, { "index": 606, "index_chain": 606, "chain_name": "2", "nt_resnum": 682, "nt_name": "U", "nt_code": "U", "nt_id": "///2/682", "linked_nts": [ "///2/681", "///2/683" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -54.200, "beta": 167.390, "gamma": 50.047, "delta": 79.669, "epsilon": -161.904, "zeta": -73.314, "epsilon_zeta": -88.591, "bb_type": "BI", "chi": -163.553, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.744, 0.722 ], "P_xyz": [ 0.857, 9.349, 1.034 ], "form": ".", "ssZp": 4.439, "Dp": 4.511, "splay_angle": 25.462, "splay_distance": 4.553, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 167.095, "theta": -126.269, "eta_prime": -176.875, "theta_prime": -136.344, "eta_base": -136.068, "theta_base": -118.735, "v0": -0.031, "v1": -22.813, "v2": 35.701, "v3": -36.724, "v4": 23.163, "amplitude": 37.682, "phase_angle": 18.660, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.840, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 183.340, 190.633, 147.095 ], "x_axis": [ 0.690, 0.076, -0.720 ], "y_axis": [ 0.641, -0.527, 0.558 ], "z_axis": [ -0.337, -0.846, -0.412 ], "quaternion": [ 0.433, 0.811, 0.221, -0.326 ] } }, { "index": 607, "index_chain": 607, "chain_name": "2", "nt_resnum": 683, "nt_name": "G", "nt_code": "G", "nt_id": "///2/683", "linked_nts": [ "///2/682", "///2/684" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": 153.799, "beta": -163.519, "gamma": -176.922, "delta": 80.983, "epsilon": -171.919, "zeta": -109.914, "epsilon_zeta": -62.004, "bb_type": "BI", "chi": -178.912, "glyco_bond": "anti", "C5prime_xyz": [ -1.440, 8.449, 1.615 ], "P_xyz": [ -0.019, 10.439, 0.673 ], "form": ".", "ssZp": 4.437, "Dp": 4.480, "splay_angle": 88.078, "splay_distance": 12.105, "splay_ratio": 0.696, "d22": null, "d64": null, "eta": 171.561, "theta": 123.535, "eta_prime": -172.960, "theta_prime": 137.699, "eta_base": -132.539, "theta_base": 173.524, "v0": 3.657, "v1": -25.490, "v2": 36.441, "v3": -35.362, "v4": 20.037, "amplitude": 37.426, "phase_angle": 13.174, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.949, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 181.674, 189.074, 143.155 ], "x_axis": [ 0.912, -0.175, -0.370 ], "y_axis": [ 0.233, -0.522, 0.821 ], "z_axis": [ -0.337, -0.835, -0.435 ], "quaternion": [ 0.489, 0.847, 0.017, -0.209 ] } }, { "index": 608, "index_chain": 608, "chain_name": "2", "nt_resnum": 684, "nt_name": "G", "nt_code": "G", "nt_id": "///2/684", "linked_nts": [ "///2/683", "///2/685" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": -33.442, "beta": -150.078, "gamma": 48.765, "delta": 79.308, "epsilon": -142.497, "zeta": -73.032, "epsilon_zeta": -69.465, "bb_type": "BI", "chi": -176.422, "glyco_bond": "anti", "C5prime_xyz": [ -1.379, 8.481, 1.468 ], "P_xyz": [ 0.818, 8.598, 2.880 ], "form": "A", "ssZp": 4.738, "Dp": 4.734, "splay_angle": 26.449, "splay_distance": 4.274, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": -131.743, "theta": -145.382, "eta_prime": -152.161, "theta_prime": -138.707, "eta_base": 179.577, "theta_base": -115.499, "v0": 4.840, "v1": -27.462, "v2": 38.457, "v3": -36.687, "v4": 20.059, "amplitude": 39.269, "phase_angle": 11.669, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.232, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 170.468, 184.561, 142.395 ], "x_axis": [ 0.648, 0.204, -0.734 ], "y_axis": [ 0.725, 0.130, 0.676 ], "z_axis": [ 0.234, -0.970, -0.064 ], "quaternion": [ 0.655, 0.629, 0.369, -0.199 ] } }, { "index": 609, "index_chain": 609, "chain_name": "2", "nt_resnum": 685, "nt_name": "A", "nt_code": "A", "nt_id": "///2/685", "linked_nts": [ "///2/684", "///2/686" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,junction-loop", "alpha": -58.724, "beta": 174.929, "gamma": 54.744, "delta": 76.774, "epsilon": -138.225, "zeta": -71.136, "epsilon_zeta": -67.089, "bb_type": "BI", "chi": -168.451, "glyco_bond": "anti", "C5prime_xyz": [ -1.742, 8.700, 0.972 ], "P_xyz": [ 0.732, 9.461, 1.340 ], "form": ".", "ssZp": 4.610, "Dp": 4.711, "splay_angle": 25.469, "splay_distance": 3.991, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 174.334, "theta": -139.374, "eta_prime": -173.748, "theta_prime": -134.341, "eta_base": -141.590, "theta_base": -84.499, "v0": 0.023, "v1": -24.068, "v2": 37.651, "v3": -38.662, "v4": 24.339, "amplitude": 39.716, "phase_angle": 18.561, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 170.057, 181.140, 139.865 ], "x_axis": [ 0.912, 0.267, -0.312 ], "y_axis": [ 0.321, 0.011, 0.947 ], "z_axis": [ 0.256, -0.964, -0.075 ], "quaternion": [ 0.680, 0.703, 0.209, -0.020 ] } }, { "index": 610, "index_chain": 610, "chain_name": "2", "nt_resnum": 686, "nt_name": "U", "nt_code": "U", "nt_id": "///2/686", "linked_nts": [ "///2/685", "///2/687" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate", "alpha": -61.021, "beta": 160.608, "gamma": 62.795, "delta": 80.693, "epsilon": -139.570, "zeta": -109.219, "epsilon_zeta": -30.350, "bb_type": "--", "chi": -159.546, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.746, 0.486 ], "P_xyz": [ 1.046, 9.182, 0.090 ], "form": ".", "ssZp": 4.384, "Dp": 4.675, "splay_angle": 20.789, "splay_distance": 3.228, "splay_ratio": 0.188, "d22": 8.908, "d64": 7.835, "eta": 168.896, "theta": -138.501, "eta_prime": -170.238, "theta_prime": -139.205, "eta_base": -103.943, "theta_base": -116.651, "v0": 1.582, "v1": -23.897, "v2": 35.873, "v3": -35.924, "v4": 21.665, "amplitude": 37.359, "phase_angle": 16.217, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.760, "filter_rmsd": 0.103, "frame": { "rmsd": 0.002, "origin": [ 173.419, 179.355, 138.665 ], "x_axis": [ 0.868, 0.160, 0.471 ], "y_axis": [ -0.388, -0.374, 0.842 ], "z_axis": [ 0.311, -0.914, -0.263 ], "quaternion": [ 0.555, 0.791, -0.072, 0.247 ] } }, { "index": 611, "index_chain": 611, "chain_name": "2", "nt_resnum": 687, "nt_name": "C", "nt_code": "C", "nt_id": "///2/687", "linked_nts": [ "///2/686", "///2/688" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,ss-non-loop,phosphate,splayed-apart", "alpha": 72.932, "beta": 155.740, "gamma": -55.481, "delta": 146.522, "epsilon": -90.513, "zeta": -68.504, "epsilon_zeta": -22.009, "bb_type": "--", "chi": 50.512, "glyco_bond": "syn", "C5prime_xyz": [ -5.459, 4.008, 0.694 ], "P_xyz": [ -7.570, 2.875, -0.377 ], "form": ".", "ssZp": -0.713, "Dp": 0.721, "splay_angle": 127.898, "splay_distance": 17.081, "splay_ratio": 0.899, "d22": 10.093, "d64": 12.035, "eta": -151.183, "theta": -27.978, "eta_prime": -147.143, "theta_prime": -102.511, "eta_base": -130.259, "theta_base": -140.401, "v0": -21.266, "v1": 35.384, "v2": -35.167, "v3": 23.824, "v4": -1.807, "amplitude": 36.583, "phase_angle": 164.008, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.584, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 174.994, 176.548, 138.423 ], "x_axis": [ 0.644, 0.255, -0.721 ], "y_axis": [ -0.293, -0.789, -0.540 ], "z_axis": [ -0.707, 0.559, -0.433 ], "quaternion": [ -0.325, 0.847, -0.011, -0.422 ] } }, { "index": 612, "index_chain": 612, "chain_name": "2", "nt_resnum": 688, "nt_name": "U", "nt_code": "U", "nt_id": "///2/688", "linked_nts": [ "///2/687", "///2/689" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 135.521, "beta": 145.369, "gamma": 60.007, "delta": 136.473, "epsilon": 56.948, "zeta": -59.277, "epsilon_zeta": -243.775, "bb_type": "--", "chi": -151.274, "glyco_bond": "anti", "C5prime_xyz": [ -1.890, 8.715, 0.411 ], "P_xyz": [ 0.561, 8.722, 1.345 ], "form": ".", "ssZp": -0.550, "Dp": 1.329, "splay_angle": 17.394, "splay_distance": 2.898, "splay_ratio": 0.163, "d22": 5.722, "d64": 6.563, "eta": -101.185, "theta": -122.505, "eta_prime": 89.368, "theta_prime": 114.638, "eta_base": 101.555, "theta_base": 105.879, "v0": -20.639, "v1": 32.056, "v2": -30.723, "v3": 19.678, "v4": 0.381, "amplitude": 32.583, "phase_angle": 160.546, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 171.399, 160.024, 136.015 ], "x_axis": [ -0.388, 0.253, -0.886 ], "y_axis": [ -0.354, 0.847, 0.397 ], "z_axis": [ 0.851, 0.468, -0.238 ], "quaternion": [ 0.552, -0.032, 0.786, 0.275 ] } }, { "index": 613, "index_chain": 613, "chain_name": "2", "nt_resnum": 689, "nt_name": "U", "nt_code": "U", "nt_id": "///2/689", "linked_nts": [ "///2/688", "///2/690" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": 172.699, "beta": -129.131, "gamma": 175.460, "delta": 83.566, "epsilon": 166.281, "zeta": 64.513, "epsilon_zeta": 101.769, "bb_type": "--", "chi": -138.935, "glyco_bond": "anti", "C5prime_xyz": [ -1.738, 8.756, -0.771 ], "P_xyz": [ -0.634, 8.886, -3.156 ], "form": ".", "ssZp": 3.615, "Dp": 3.998, "splay_angle": 40.183, "splay_distance": 6.476, "splay_ratio": 0.344, "d22": null, "d64": null, "eta": -150.847, "theta": -83.693, "eta_prime": -158.476, "theta_prime": -120.930, "eta_base": -169.381, "theta_base": -87.005, "v0": -3.601, "v1": -17.167, "v2": 29.942, "v3": -32.902, "v4": 23.124, "amplitude": 32.967, "phase_angle": 24.738, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 169.047, 158.332, 135.946 ], "x_axis": [ 0.733, -0.657, 0.175 ], "y_axis": [ 0.028, 0.286, 0.958 ], "z_axis": [ -0.679, -0.697, 0.228 ], "quaternion": [ 0.750, 0.552, -0.285, -0.228 ] } }, { "index": 614, "index_chain": 614, "chain_name": "2", "nt_resnum": 690, "nt_name": "G", "nt_code": "G", "nt_id": "///2/690", "linked_nts": [ "///2/689", "///2/691" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate", "alpha": 168.808, "beta": 94.173, "gamma": 137.314, "delta": 85.872, "epsilon": -162.510, "zeta": -76.716, "epsilon_zeta": -85.793, "bb_type": "BI", "chi": -131.710, "glyco_bond": "anti", "C5prime_xyz": [ -1.062, 8.457, -1.116 ], "P_xyz": [ -1.483, 8.468, -3.697 ], "form": ".", "ssZp": 3.416, "Dp": 4.553, "splay_angle": 25.045, "splay_distance": 4.026, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 134.497, "theta": 160.775, "eta_prime": 174.847, "theta_prime": 164.076, "eta_base": -129.906, "theta_base": 177.157, "v0": 8.292, "v1": -27.501, "v2": 35.172, "v3": -31.379, "v4": 14.658, "amplitude": 35.329, "phase_angle": 5.407, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 170.344, 154.141, 140.709 ], "x_axis": [ 0.636, 0.007, 0.772 ], "y_axis": [ -0.728, 0.337, 0.597 ], "z_axis": [ -0.256, -0.942, 0.219 ], "quaternion": [ 0.740, 0.520, -0.347, 0.248 ] } }, { "index": 615, "index_chain": 615, "chain_name": "2", "nt_resnum": 691, "nt_name": "G", "nt_code": "G", "nt_id": "///2/691", "linked_nts": [ "///2/690", "///2/692" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.348, "beta": 162.487, "gamma": 63.599, "delta": 81.308, "epsilon": -157.158, "zeta": -74.687, "epsilon_zeta": -82.471, "bb_type": "BI", "chi": -155.343, "glyco_bond": "anti", "C5prime_xyz": [ -1.151, 8.742, 0.234 ], "P_xyz": [ 1.404, 8.902, -0.351 ], "form": "A", "ssZp": 4.334, "Dp": 4.616, "splay_angle": 22.916, "splay_distance": 3.621, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 165.124, "theta": -150.571, "eta_prime": 177.606, "theta_prime": -155.295, "eta_base": -156.754, "theta_base": -143.452, "v0": 4.804, "v1": -26.504, "v2": 36.971, "v3": -35.142, "v4": 19.165, "amplitude": 37.719, "phase_angle": 11.427, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.706, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 169.297, 150.282, 141.173 ], "x_axis": [ 0.414, 0.266, 0.871 ], "y_axis": [ -0.890, 0.319, 0.326 ], "z_axis": [ -0.191, -0.910, 0.368 ], "quaternion": [ 0.725, 0.426, -0.366, 0.399 ] } }, { "index": 616, "index_chain": 616, "chain_name": "2", "nt_resnum": 692, "nt_name": "G", "nt_code": "G", "nt_id": "///2/692", "linked_nts": [ "///2/691", "///2/693" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -61.556, "beta": 174.889, "gamma": 47.918, "delta": 80.052, "epsilon": -118.559, "zeta": -97.595, "epsilon_zeta": -20.964, "bb_type": "--", "chi": -165.198, "glyco_bond": "anti", "C5prime_xyz": [ -1.253, 8.710, 0.825 ], "P_xyz": [ 1.304, 9.060, 1.299 ], "form": "A", "ssZp": 4.443, "Dp": 4.771, "splay_angle": 21.016, "splay_distance": 3.301, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 174.387, "theta": -145.380, "eta_prime": 179.980, "theta_prime": -139.975, "eta_base": -156.995, "theta_base": -110.421, "v0": 3.009, "v1": -25.189, "v2": 36.617, "v3": -35.912, "v4": 20.747, "amplitude": 37.767, "phase_angle": 14.174, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 169.964, 146.791, 141.868 ], "x_axis": [ 0.040, 0.608, 0.793 ], "y_axis": [ -0.984, 0.161, -0.074 ], "z_axis": [ -0.173, -0.778, 0.605 ], "quaternion": [ 0.672, 0.262, -0.359, 0.592 ] } }, { "index": 617, "index_chain": 617, "chain_name": "2", "nt_resnum": 693, "nt_name": "A", "nt_code": "A", "nt_id": "///2/693", "linked_nts": [ "///2/692", "///2/694" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -55.866, "beta": 150.615, "gamma": 51.257, "delta": 80.031, "epsilon": -133.535, "zeta": -86.503, "epsilon_zeta": -47.032, "bb_type": "BI", "chi": -159.351, "glyco_bond": "anti", "C5prime_xyz": [ -1.317, 8.707, 0.474 ], "P_xyz": [ 1.275, 8.858, 0.136 ], "form": ".", "ssZp": 4.370, "Dp": 4.741, "splay_angle": 29.798, "splay_distance": 4.657, "splay_ratio": 0.257, "d22": null, "d64": null, "eta": 161.040, "theta": -140.904, "eta_prime": 173.310, "theta_prime": -138.793, "eta_base": -147.288, "theta_base": -110.486, "v0": 3.190, "v1": -25.529, "v2": 36.972, "v3": -36.156, "v4": 20.791, "amplitude": 38.092, "phase_angle": 13.932, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.278, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 170.004, 144.949, 144.607 ], "x_axis": [ -0.451, 0.799, 0.397 ], "y_axis": [ -0.878, -0.318, -0.358 ], "z_axis": [ -0.159, -0.510, 0.845 ], "quaternion": [ 0.519, 0.073, -0.268, 0.809 ] } }, { "index": 618, "index_chain": 618, "chain_name": "2", "nt_resnum": 694, "nt_name": "G", "nt_code": "G", "nt_id": "///2/694", "linked_nts": [ "///2/693", "///2/695" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -49.913, "beta": 152.250, "gamma": 60.645, "delta": 80.809, "epsilon": -155.126, "zeta": -97.786, "epsilon_zeta": -57.339, "bb_type": "BI", "chi": -165.262, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.718, 0.832 ], "P_xyz": [ 1.155, 8.999, 0.474 ], "form": ".", "ssZp": 4.530, "Dp": 4.602, "splay_angle": 30.921, "splay_distance": 4.730, "splay_ratio": 0.267, "d22": null, "d64": null, "eta": 170.865, "theta": -167.761, "eta_prime": -169.577, "theta_prime": -170.124, "eta_base": -123.243, "theta_base": -164.978, "v0": 2.396, "v1": -24.526, "v2": 36.102, "v3": -35.707, "v4": 21.022, "amplitude": 37.379, "phase_angle": 15.017, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.554, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 168.773, 144.596, 149.084 ], "x_axis": [ -0.858, 0.514, -0.005 ], "y_axis": [ -0.433, -0.726, -0.534 ], "z_axis": [ -0.278, -0.456, 0.845 ], "quaternion": [ 0.256, -0.076, -0.267, 0.926 ] } }, { "index": 619, "index_chain": 619, "chain_name": "2", "nt_resnum": 695, "nt_name": "C", "nt_code": "C", "nt_id": "///2/695", "linked_nts": [ "///2/694", "///2/696" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -49.084, "beta": 162.657, "gamma": 53.029, "delta": 82.420, "epsilon": -118.469, "zeta": -0.297, "epsilon_zeta": -118.172, "bb_type": "--", "chi": -163.209, "glyco_bond": "anti", "C5prime_xyz": [ -1.187, 8.690, 0.737 ], "P_xyz": [ 1.432, 8.823, 0.799 ], "form": ".", "ssZp": 4.374, "Dp": 4.742, "splay_angle": 34.558, "splay_distance": 6.139, "splay_ratio": 0.306, "d22": null, "d64": null, "eta": -173.422, "theta": -63.566, "eta_prime": -173.346, "theta_prime": -88.769, "eta_base": -166.442, "theta_base": -73.015, "v0": 3.609, "v1": -24.915, "v2": 35.579, "v3": -34.477, "v4": 19.484, "amplitude": 36.527, "phase_angle": 13.078, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.447, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 170.521, 143.307, 153.286 ], "x_axis": [ -0.943, 0.304, -0.134 ], "y_axis": [ -0.197, -0.838, -0.509 ], "z_axis": [ -0.267, -0.454, 0.850 ], "quaternion": [ 0.131, -0.105, -0.252, 0.953 ] } }, { "index": 620, "index_chain": 620, "chain_name": "2", "nt_resnum": 696, "nt_name": "G", "nt_code": "G", "nt_id": "///2/696", "linked_nts": [ "///2/695", "///2/697" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -161.470, "beta": 94.142, "gamma": 164.214, "delta": 80.556, "epsilon": -157.804, "zeta": -79.723, "epsilon_zeta": -78.081, "bb_type": "BI", "chi": -175.128, "glyco_bond": "anti", "C5prime_xyz": [ -1.611, 8.554, 1.386 ], "P_xyz": [ -1.996, 10.620, -0.184 ], "form": ".", "ssZp": 4.584, "Dp": 4.586, "splay_angle": 40.649, "splay_distance": 6.088, "splay_ratio": 0.349, "d22": null, "d64": null, "eta": 149.299, "theta": 136.976, "eta_prime": 168.990, "theta_prime": 160.775, "eta_base": -146.958, "theta_base": -172.018, "v0": 2.467, "v1": -24.778, "v2": 36.374, "v3": -35.979, "v4": 21.135, "amplitude": 37.647, "phase_angle": 14.939, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 164.738, 143.212, 155.346 ], "x_axis": [ -0.498, 0.104, -0.861 ], "y_axis": [ 0.407, -0.849, -0.338 ], "z_axis": [ -0.766, -0.518, 0.380 ], "quaternion": [ -0.092, -0.493, -0.259, 0.826 ] } }, { "index": 621, "index_chain": 621, "chain_name": "2", "nt_resnum": 697, "nt_name": "G", "nt_code": "G", "nt_id": "///2/697", "linked_nts": [ "///2/696", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -59.751, "beta": -173.147, "gamma": 56.579, "delta": 81.164, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": 178.850, "glyco_bond": "anti", "C5prime_xyz": [ -1.489, 8.404, 1.737 ], "P_xyz": [ 0.928, 8.564, 2.745 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 3.506, "v1": -25.371, "v2": 36.385, "v3": -35.361, "v4": 20.092, "amplitude": 37.395, "phase_angle": 13.351, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.848, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 160.246, 142.586, 159.407 ], "x_axis": [ -0.244, -0.136, -0.960 ], "y_axis": [ 0.809, -0.575, -0.124 ], "z_axis": [ -0.535, -0.807, 0.250 ], "quaternion": [ -0.329, -0.520, -0.324, 0.719 ] } }, { "index": 622, "index_chain": 622, "chain_name": "2", "nt_resnum": 729, "nt_name": "C", "nt_code": "C", "nt_id": "///2/729", "linked_nts": [ null, "///2/730" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": null, "beta": 167.653, "gamma": 53.370, "delta": 81.924, "epsilon": -105.129, "zeta": -94.702, "epsilon_zeta": -10.428, "bb_type": "--", "chi": -164.879, "glyco_bond": "anti", "C5prime_xyz": [ -1.231, 8.696, 0.825 ], "P_xyz": [ 1.375, 8.925, 1.017 ], "form": ".", "ssZp": 4.319, "Dp": 4.745, "splay_angle": 24.188, "splay_distance": 3.837, "splay_ratio": 0.213, "d22": 4.031, "d64": 3.415, "eta": null, "theta": -129.551, "eta_prime": null, "theta_prime": -123.558, "eta_base": null, "theta_base": -65.972, "v0": 3.245, "v1": -24.961, "v2": 35.973, "v3": -35.064, "v4": 20.085, "amplitude": 37.023, "phase_angle": 13.678, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 163.417, 143.096, 158.974 ], "x_axis": [ -0.161, -0.569, -0.806 ], "y_axis": [ -0.419, 0.779, -0.466 ], "z_axis": [ 0.893, 0.263, -0.364 ], "quaternion": [ 0.560, -0.326, 0.759, -0.067 ] } }, { "index": 623, "index_chain": 623, "chain_name": "2", "nt_resnum": 730, "nt_name": "C", "nt_code": "C", "nt_id": "///2/730", "linked_nts": [ "///2/729", "///2/731" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -56.213, "beta": 128.822, "gamma": 69.214, "delta": 82.796, "epsilon": -170.564, "zeta": -85.175, "epsilon_zeta": -85.390, "bb_type": "BI", "chi": -153.578, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.764, 0.134 ], "P_xyz": [ 0.961, 8.509, -1.177 ], "form": ".", "ssZp": 4.259, "Dp": 4.461, "splay_angle": 43.782, "splay_distance": 6.515, "splay_ratio": 0.374, "d22": null, "d64": null, "eta": 147.898, "theta": -164.183, "eta_prime": -176.959, "theta_prime": -174.537, "eta_base": -97.338, "theta_base": -162.148, "v0": 3.200, "v1": -24.526, "v2": 35.321, "v3": -34.429, "v4": 19.715, "amplitude": 36.349, "phase_angle": 13.659, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.829, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 164.439, 143.193, 155.277 ], "x_axis": [ -0.447, 0.153, -0.881 ], "y_axis": [ 0.163, 0.983, 0.088 ], "z_axis": [ 0.880, -0.104, -0.464 ], "quaternion": [ 0.518, 0.093, 0.851, -0.005 ] } }, { "index": 624, "index_chain": 624, "chain_name": "2", "nt_resnum": 731, "nt_name": "G", "nt_code": "G", "nt_id": "///2/731", "linked_nts": [ "///2/730", "///2/732" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -73.006, "beta": -157.911, "gamma": 46.485, "delta": 82.652, "epsilon": -146.900, "zeta": -67.660, "epsilon_zeta": -79.240, "bb_type": "BI", "chi": 162.492, "glyco_bond": "--", "C5prime_xyz": [ -1.561, 7.843, 2.548 ], "P_xyz": [ 0.278, 7.285, 4.341 ], "form": ".", "ssZp": 4.402, "Dp": 4.678, "splay_angle": 30.260, "splay_distance": 4.366, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 178.556, "theta": -113.843, "eta_prime": 170.990, "theta_prime": -110.124, "eta_base": -172.857, "theta_base": -56.739, "v0": 6.016, "v1": -26.826, "v2": 36.298, "v3": -33.810, "v4": 17.567, "amplitude": 36.794, "phase_angle": 9.421, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.453, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 170.592, 141.323, 154.234 ], "x_axis": [ -0.953, 0.120, -0.277 ], "y_axis": [ -0.118, 0.695, 0.709 ], "z_axis": [ 0.278, 0.708, -0.649 ], "quaternion": [ 0.153, 0.001, 0.908, 0.390 ] } }, { "index": 625, "index_chain": 625, "chain_name": "2", "nt_resnum": 732, "nt_name": "U", "nt_code": "U", "nt_id": "///2/732", "linked_nts": [ "///2/731", "///2/733" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -144.357, "beta": -137.850, "gamma": 95.616, "delta": 82.188, "epsilon": -160.028, "zeta": -83.454, "epsilon_zeta": -76.574, "bb_type": "BI", "chi": -169.130, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.583, 1.075 ], "P_xyz": [ 1.268, 8.411, 1.240 ], "form": ".", "ssZp": 4.538, "Dp": 4.563, "splay_angle": 35.573, "splay_distance": 5.449, "splay_ratio": 0.307, "d22": 5.922, "d64": 6.611, "eta": 145.486, "theta": -154.795, "eta_prime": 173.043, "theta_prime": -156.664, "eta_base": -111.499, "theta_base": -150.387, "v0": 3.784, "v1": -25.272, "v2": 35.966, "v3": -34.772, "v4": 19.540, "amplitude": 36.890, "phase_angle": 12.853, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 169.179, 144.104, 151.179 ], "x_axis": [ -0.558, 0.638, 0.530 ], "y_axis": [ 0.780, 0.186, 0.598 ], "z_axis": [ 0.283, 0.747, -0.601 ], "quaternion": [ -0.081, 0.463, 0.766, 0.439 ] } }, { "index": 626, "index_chain": 626, "chain_name": "2", "nt_resnum": 733, "nt_name": "C", "nt_code": "C", "nt_id": "///2/733", "linked_nts": [ "///2/732", "///2/734" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.239, "beta": 175.596, "gamma": 65.797, "delta": 81.470, "epsilon": -136.342, "zeta": -93.573, "epsilon_zeta": -42.769, "bb_type": "BI", "chi": -162.661, "glyco_bond": "anti", "C5prime_xyz": [ -1.251, 8.728, 0.685 ], "P_xyz": [ 1.354, 9.046, 0.628 ], "form": ".", "ssZp": 4.475, "Dp": 4.708, "splay_angle": 24.587, "splay_distance": 3.871, "splay_ratio": 0.213, "d22": 5.052, "d64": 4.547, "eta": -171.030, "theta": -156.110, "eta_prime": -166.800, "theta_prime": -154.724, "eta_base": -154.288, "theta_base": -159.623, "v0": 3.212, "v1": -25.043, "v2": 36.151, "v3": -35.254, "v4": 20.219, "amplitude": 37.217, "phase_angle": 13.747, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.658, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 169.463, 145.657, 145.964 ], "x_axis": [ -0.243, 0.785, 0.569 ], "y_axis": [ 0.883, -0.063, 0.465 ], "z_axis": [ 0.401, 0.616, -0.678 ], "quaternion": [ -0.062, 0.612, 0.682, 0.396 ] } }, { "index": 627, "index_chain": 627, "chain_name": "2", "nt_resnum": 734, "nt_name": "C", "nt_code": "C", "nt_id": "///2/734", "linked_nts": [ "///2/733", "///2/735" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -85.463, "beta": -179.821, "gamma": 53.753, "delta": 83.222, "epsilon": -155.038, "zeta": -74.991, "epsilon_zeta": -80.047, "bb_type": "BI", "chi": -159.271, "glyco_bond": "anti", "C5prime_xyz": [ -1.134, 8.739, 0.488 ], "P_xyz": [ 1.451, 9.004, 0.874 ], "form": "A", "ssZp": 4.360, "Dp": 4.558, "splay_angle": 21.753, "splay_distance": 3.445, "splay_ratio": 0.189, "d22": 4.542, "d64": 4.366, "eta": 155.465, "theta": -150.372, "eta_prime": 158.544, "theta_prime": -149.342, "eta_base": 162.896, "theta_base": -131.602, "v0": 3.078, "v1": -23.983, "v2": 34.610, "v3": -33.763, "v4": 19.373, "amplitude": 35.631, "phase_angle": 13.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.462, "filter_rmsd": 0.069, "frame": { "rmsd": 0.008, "origin": [ 169.653, 146.541, 142.199 ], "x_axis": [ -0.116, 0.188, 0.975 ], "y_axis": [ 0.968, -0.197, 0.153 ], "z_axis": [ 0.221, 0.962, -0.159 ], "quaternion": [ -0.363, 0.557, 0.519, 0.537 ] } }, { "index": 628, "index_chain": 628, "chain_name": "2", "nt_resnum": 735, "nt_name": "C", "nt_code": "C", "nt_id": "///2/735", "linked_nts": [ "///2/734", "///2/736" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.694, "beta": 175.467, "gamma": 53.134, "delta": 83.272, "epsilon": -100.494, "zeta": -134.323, "epsilon_zeta": 33.829, "bb_type": "--", "chi": -155.020, "glyco_bond": "anti", "C5prime_xyz": [ -1.220, 8.776, 0.239 ], "P_xyz": [ 1.382, 9.092, 0.406 ], "form": ".", "ssZp": 3.807, "Dp": 4.669, "splay_angle": 28.997, "splay_distance": 4.718, "splay_ratio": 0.261, "d22": 5.198, "d64": 4.785, "eta": -177.227, "theta": -163.402, "eta_prime": -171.069, "theta_prime": -153.160, "eta_base": -148.493, "theta_base": -128.431, "v0": 2.266, "v1": -23.246, "v2": 34.199, "v3": -33.848, "v4": 19.940, "amplitude": 35.411, "phase_angle": 15.037, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.951, "filter_rmsd": 0.067, "frame": { "rmsd": 0.005, "origin": [ 169.082, 149.855, 141.451 ], "x_axis": [ 0.329, -0.026, 0.944 ], "y_axis": [ 0.930, -0.163, -0.328 ], "z_axis": [ 0.162, 0.986, -0.029 ], "quaternion": [ 0.533, -0.617, -0.367, -0.449 ] } }, { "index": 629, "index_chain": 629, "chain_name": "2", "nt_resnum": 736, "nt_name": "C", "nt_code": "C", "nt_id": "///2/736", "linked_nts": [ "///2/735", null ], "nt_type": "RNA", "dbn": ")", "is_broken": true, "summary": "break,anti,~C3'-endo,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -49.842, "beta": 113.286, "gamma": 65.462, "delta": 81.658, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -154.954, "glyco_bond": "anti", "C5prime_xyz": [ -1.241, 8.773, 0.217 ], "P_xyz": [ 0.943, 8.204, -1.116 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 3.016, "v1": -24.771, "v2": 35.921, "v3": -35.165, "v4": 20.282, "amplitude": 37.028, "phase_angle": 14.047, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.088, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 170.380, 154.362, 140.946 ], "x_axis": [ 0.636, -0.126, 0.761 ], "y_axis": [ 0.754, -0.107, -0.648 ], "z_axis": [ 0.163, 0.986, 0.026 ], "quaternion": [ 0.624, -0.655, -0.240, -0.353 ] } }, { "index": 630, "index_chain": 630, "chain_name": "2", "nt_resnum": 743, "nt_name": "U", "nt_code": "U", "nt_id": "///2/743", "linked_nts": [ null, "///2/744" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": null, "beta": -129.862, "gamma": 63.165, "delta": 81.477, "epsilon": -119.829, "zeta": -110.353, "epsilon_zeta": -9.476, "bb_type": "--", "chi": -162.162, "glyco_bond": "anti", "C5prime_xyz": [ -1.310, 8.670, 0.660 ], "P_xyz": [ 1.054, 8.596, 1.794 ], "form": ".", "ssZp": 4.373, "Dp": 4.767, "splay_angle": 26.938, "splay_distance": 4.207, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": null, "theta": -162.888, "eta_prime": null, "theta_prime": -158.009, "eta_base": null, "theta_base": -151.427, "v0": 3.679, "v1": -25.506, "v2": 36.434, "v3": -35.289, "v4": 19.942, "amplitude": 37.404, "phase_angle": 13.077, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 187.494, 157.356, 128.451 ], "x_axis": [ 0.506, -0.477, 0.719 ], "y_axis": [ -0.853, -0.151, 0.500 ], "z_axis": [ -0.130, -0.866, -0.483 ], "quaternion": [ 0.467, 0.731, -0.455, 0.201 ] } }, { "index": 631, "index_chain": 631, "chain_name": "2", "nt_resnum": 744, "nt_name": "G", "nt_code": "G", "nt_id": "///2/744", "linked_nts": [ "///2/743", "///2/745" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -71.065, "beta": 110.899, "gamma": 97.288, "delta": 79.748, "epsilon": -141.854, "zeta": -63.072, "epsilon_zeta": -78.782, "bb_type": "BI", "chi": -154.477, "glyco_bond": "anti", "C5prime_xyz": [ -1.037, 8.666, 0.119 ], "P_xyz": [ 0.100, 8.592, -2.245 ], "form": ".", "ssZp": 4.255, "Dp": 4.765, "splay_angle": 32.480, "splay_distance": 5.443, "splay_ratio": 0.288, "d22": null, "d64": null, "eta": 165.633, "theta": -132.087, "eta_prime": -177.929, "theta_prime": -145.646, "eta_base": -162.329, "theta_base": -138.275, "v0": 7.525, "v1": -30.084, "v2": 40.085, "v3": -36.727, "v4": 18.418, "amplitude": 40.488, "phase_angle": 8.090, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 187.130, 155.219, 124.846 ], "x_axis": [ 0.349, -0.836, 0.424 ], "y_axis": [ -0.937, -0.301, 0.178 ], "z_axis": [ -0.021, -0.459, -0.888 ], "quaternion": [ 0.200, 0.796, -0.557, 0.126 ] } }, { "index": 632, "index_chain": 632, "chain_name": "2", "nt_resnum": 745, "nt_name": "C", "nt_code": "C", "nt_id": "///2/745", "linked_nts": [ "///2/744", null ], "nt_type": "RNA", "dbn": "(", "is_broken": true, "summary": "break,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet", "alpha": -62.674, "beta": 179.267, "gamma": 65.632, "delta": 75.890, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -163.204, "glyco_bond": "anti", "C5prime_xyz": [ -2.116, 8.936, 0.580 ], "P_xyz": [ 0.223, 10.093, 0.783 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -6.530, "v1": -18.109, "v2": 34.398, "v3": -39.184, "v4": 28.804, "amplitude": 38.976, "phase_angle": 28.051, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.693, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 189.529, 151.477, 121.706 ], "x_axis": [ -0.082, -0.684, 0.725 ], "y_axis": [ -0.987, 0.159, 0.038 ], "z_axis": [ -0.141, -0.712, -0.688 ], "quaternion": [ -0.312, -0.601, 0.694, -0.243 ] } }, { "index": 633, "index_chain": 633, "chain_name": "2", "nt_resnum": 749, "nt_name": "U", "nt_code": "U", "nt_id": "///2/749", "linked_nts": [ null, "///2/750" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": null, "beta": 178.235, "gamma": 55.380, "delta": 81.135, "epsilon": -158.237, "zeta": -78.697, "epsilon_zeta": -79.540, "bb_type": "BI", "chi": -172.604, "glyco_bond": "anti", "C5prime_xyz": [ -1.620, 8.598, 1.251 ], "P_xyz": [ 0.858, 9.047, 1.976 ], "form": "A", "ssZp": 4.507, "Dp": 4.535, "splay_angle": 24.433, "splay_distance": 3.777, "splay_ratio": 0.214, "d22": 5.019, "d64": 5.033, "eta": null, "theta": -158.328, "eta_prime": null, "theta_prime": -157.059, "eta_base": null, "theta_base": -140.865, "v0": 1.359, "v1": -23.434, "v2": 35.306, "v3": -35.494, "v4": 21.512, "amplitude": 36.825, "phase_angle": 16.513, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 189.970, 147.558, 121.189 ], "x_axis": [ -0.934, 0.267, 0.237 ], "y_axis": [ -0.140, 0.337, -0.931 ], "z_axis": [ -0.329, -0.903, -0.278 ], "quaternion": [ -0.177, 0.040, 0.798, -0.574 ] } }, { "index": 634, "index_chain": 634, "chain_name": "2", "nt_resnum": 750, "nt_name": "C", "nt_code": "C", "nt_id": "///2/750", "linked_nts": [ "///2/749", "///2/751" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -70.134, "beta": 178.725, "gamma": 57.289, "delta": 81.753, "epsilon": -169.788, "zeta": -75.029, "epsilon_zeta": -94.758, "bb_type": "BI", "chi": -166.506, "glyco_bond": "anti", "C5prime_xyz": [ -1.198, 8.665, 0.919 ], "P_xyz": [ 1.390, 8.905, 1.304 ], "form": ".", "ssZp": 4.458, "Dp": 4.486, "splay_angle": 28.778, "splay_distance": 4.841, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 169.120, "theta": -131.217, "eta_prime": 178.678, "theta_prime": -130.761, "eta_base": -153.564, "theta_base": -116.970, "v0": 3.747, "v1": -25.362, "v2": 36.146, "v3": -34.932, "v4": 19.672, "amplitude": 37.083, "phase_angle": 12.908, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.886, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 190.045, 143.932, 122.245 ], "x_axis": [ -0.894, 0.385, -0.228 ], "y_axis": [ 0.305, 0.149, -0.941 ], "z_axis": [ -0.328, -0.911, -0.251 ], "quaternion": [ -0.033, 0.228, 0.757, -0.611 ] } }, { "index": 635, "index_chain": 635, "chain_name": "2", "nt_resnum": 751, "nt_name": "G", "nt_code": "G", "nt_id": "///2/751", "linked_nts": [ "///2/750", "///2/752" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 171.306, "beta": -152.531, "gamma": -172.932, "delta": 148.031, "epsilon": -153.650, "zeta": -80.284, "epsilon_zeta": -73.366, "bb_type": "BI", "chi": -155.665, "glyco_bond": "anti", "C5prime_xyz": [ -1.984, 8.679, 0.752 ], "P_xyz": [ 0.139, 10.047, 0.012 ], "form": ".", "ssZp": 1.434, "Dp": 1.949, "splay_angle": 38.037, "splay_distance": 6.653, "splay_ratio": 0.334, "d22": null, "d64": null, "eta": -145.557, "theta": -116.702, "eta_prime": -124.051, "theta_prime": -138.775, "eta_base": -103.905, "theta_base": -114.410, "v0": -21.367, "v1": 36.146, "v2": -36.281, "v3": 24.882, "v4": -2.411, "amplitude": 37.586, "phase_angle": 164.857, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.772, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 186.930, 140.352, 123.200 ], "x_axis": [ -0.642, 0.430, -0.635 ], "y_axis": [ 0.672, -0.084, -0.736 ], "z_axis": [ -0.369, -0.899, -0.235 ], "quaternion": [ 0.099, 0.411, 0.670, -0.610 ] } }, { "index": 636, "index_chain": 636, "chain_name": "2", "nt_resnum": 752, "nt_name": "G", "nt_code": "G", "nt_id": "///2/752", "linked_nts": [ "///2/751", "///2/753" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": 153.420, "beta": 155.053, "gamma": -178.389, "delta": 137.183, "epsilon": 58.108, "zeta": 75.884, "epsilon_zeta": -17.776, "bb_type": "--", "chi": -141.699, "glyco_bond": "anti", "C5prime_xyz": [ -1.805, 8.773, -0.072 ], "P_xyz": [ -0.547, 10.608, -1.469 ], "form": ".", "ssZp": -0.234, "Dp": 1.276, "splay_angle": 67.347, "splay_distance": 11.323, "splay_ratio": 0.569, "d22": null, "d64": null, "eta": -122.319, "theta": 174.265, "eta_prime": -132.079, "theta_prime": -179.831, "eta_base": -109.401, "theta_base": 169.249, "v0": -19.966, "v1": 31.496, "v2": -30.510, "v3": 19.782, "v4": -0.078, "amplitude": 32.192, "phase_angle": 161.400, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 184.330, 134.234, 123.456 ], "x_axis": [ -0.202, 0.225, -0.953 ], "y_axis": [ 0.979, 0.022, -0.203 ], "z_axis": [ -0.025, -0.974, -0.224 ], "quaternion": [ 0.386, 0.500, 0.602, -0.489 ] } }, { "index": 637, "index_chain": 637, "chain_name": "2", "nt_resnum": 753, "nt_name": "C", "nt_code": "C", "nt_id": "///2/753", "linked_nts": [ "///2/752", "///2/754" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,bulge", "alpha": 155.651, "beta": -132.782, "gamma": -65.072, "delta": 145.523, "epsilon": -104.986, "zeta": -55.198, "epsilon_zeta": -49.788, "bb_type": "--", "chi": -125.473, "glyco_bond": "anti", "C5prime_xyz": [ -1.870, 8.667, -0.951 ], "P_xyz": [ -2.146, 11.158, -1.739 ], "form": ".", "ssZp": 1.071, "Dp": 1.083, "splay_angle": 81.245, "splay_distance": 13.720, "splay_ratio": 0.652, "d22": null, "d64": null, "eta": 41.494, "theta": -120.030, "eta_prime": 65.627, "theta_prime": -114.958, "eta_base": 69.624, "theta_base": -94.969, "v0": -22.082, "v1": 35.699, "v2": -34.941, "v3": 23.101, "v4": -0.848, "amplitude": 36.629, "phase_angle": 162.536, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 182.223, 131.976, 134.350 ], "x_axis": [ -0.226, 0.954, 0.200 ], "y_axis": [ 0.680, 0.301, -0.669 ], "z_axis": [ -0.698, -0.015, -0.716 ], "quaternion": [ -0.300, 0.545, 0.749, -0.228 ] } }, { "index": 638, "index_chain": 638, "chain_name": "2", "nt_resnum": 754, "nt_name": "G", "nt_code": "G", "nt_id": "///2/754", "linked_nts": [ "///2/753", "///2/755" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -104.762, "beta": 94.102, "gamma": 175.875, "delta": 80.920, "epsilon": -147.226, "zeta": -39.617, "epsilon_zeta": -107.609, "bb_type": "BI", "chi": -147.381, "glyco_bond": "anti", "C5prime_xyz": [ -1.190, 8.773, -0.233 ], "P_xyz": [ -2.124, 10.495, -1.974 ], "form": ".", "ssZp": 4.001, "Dp": 4.656, "splay_angle": 26.486, "splay_distance": 4.696, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": -153.049, "theta": 175.814, "eta_prime": -130.217, "theta_prime": -175.470, "eta_base": -98.595, "theta_base": -154.434, "v0": 3.375, "v1": -25.229, "v2": 36.333, "v3": -35.381, "v4": 20.193, "amplitude": 37.375, "phase_angle": 13.560, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 180.940, 133.902, 120.827 ], "x_axis": [ 0.481, 0.077, -0.873 ], "y_axis": [ 0.711, -0.618, 0.337 ], "z_axis": [ -0.513, -0.783, -0.352 ], "quaternion": [ 0.358, 0.783, 0.252, -0.443 ] } }, { "index": 639, "index_chain": 639, "chain_name": "2", "nt_resnum": 755, "nt_name": "C", "nt_code": "C", "nt_id": "///2/755", "linked_nts": [ "///2/754", "///2/756" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -146.765, "beta": 134.912, "gamma": 151.277, "delta": 82.051, "epsilon": -110.537, "zeta": -83.892, "epsilon_zeta": -26.645, "bb_type": "--", "chi": -173.686, "glyco_bond": "anti", "C5prime_xyz": [ -1.218, 8.534, 1.332 ], "P_xyz": [ -0.228, 10.520, -0.068 ], "form": "A", "ssZp": 4.590, "Dp": 4.755, "splay_angle": 23.563, "splay_distance": 3.754, "splay_ratio": 0.204, "d22": 4.202, "d64": 3.572, "eta": 172.060, "theta": -162.963, "eta_prime": -176.613, "theta_prime": -153.932, "eta_base": -147.387, "theta_base": -111.148, "v0": 4.020, "v1": -25.293, "v2": 35.753, "v3": -34.426, "v4": 19.201, "amplitude": 36.615, "phase_angle": 12.460, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.010, "filter_rmsd": 0.069, "frame": { "rmsd": 0.009, "origin": [ 178.846, 132.007, 117.075 ], "x_axis": [ 0.832, 0.066, -0.552 ], "y_axis": [ 0.471, -0.610, 0.637 ], "z_axis": [ -0.295, -0.789, -0.539 ], "quaternion": [ 0.413, 0.863, 0.156, -0.245 ] } }, { "index": 640, "index_chain": 640, "chain_name": "2", "nt_resnum": 756, "nt_name": "C", "nt_code": "C", "nt_id": "///2/756", "linked_nts": [ "///2/755", null ], "nt_type": "RNA", "dbn": "(", "is_broken": true, "summary": "break,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -66.275, "beta": 164.793, "gamma": 52.863, "delta": 80.905, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -151.349, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.822, -0.002 ], "P_xyz": [ 1.193, 9.202, -0.258 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 1.399, "v1": -23.521, "v2": 35.442, "v3": -35.617, "v4": 21.585, "amplitude": 36.962, "phase_angle": 16.487, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.298, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 179.732, 129.973, 114.047 ], "x_axis": [ 0.964, -0.120, 0.238 ], "y_axis": [ -0.254, -0.681, 0.687 ], "z_axis": [ 0.080, -0.723, -0.687 ], "quaternion": [ 0.386, 0.913, -0.102, 0.087 ] } }, { "index": 641, "index_chain": 641, "chain_name": "2", "nt_resnum": 788, "nt_name": "G", "nt_code": "G", "nt_id": "///2/788", "linked_nts": [ null, "///2/789" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,non-stack,canonical,helix-end,stem-end,coaxial-stack", "alpha": null, "beta": -144.231, "gamma": -62.974, "delta": 80.717, "epsilon": -115.916, "zeta": -102.702, "epsilon_zeta": -13.214, "bb_type": "--", "chi": -168.562, "glyco_bond": "anti", "C5prime_xyz": [ -1.499, 8.687, 1.019 ], "P_xyz": [ -1.567, 11.115, 2.011 ], "form": ".", "ssZp": 4.505, "Dp": 4.737, "splay_angle": 26.619, "splay_distance": 4.154, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": null, "theta": 159.203, "eta_prime": null, "theta_prime": 175.786, "eta_base": null, "theta_base": -155.377, "v0": 1.935, "v1": -24.038, "v2": 35.773, "v3": -35.655, "v4": 21.276, "amplitude": 37.160, "phase_angle": 15.705, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 179.576, 129.369, 113.659 ], "x_axis": [ 0.969, -0.063, 0.241 ], "y_axis": [ 0.211, 0.720, -0.661 ], "z_axis": [ -0.132, 0.691, 0.711 ], "quaternion": [ 0.922, -0.367, -0.101, -0.074 ] } }, { "index": 642, "index_chain": 642, "chain_name": "2", "nt_resnum": 789, "nt_name": "G", "nt_code": "G", "nt_id": "///2/789", "linked_nts": [ "///2/788", "///2/790" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -79.330, "beta": 174.147, "gamma": 40.562, "delta": 82.567, "epsilon": -129.522, "zeta": -108.314, "epsilon_zeta": -21.208, "bb_type": "--", "chi": 179.996, "glyco_bond": "anti", "C5prime_xyz": [ -1.277, 8.368, 1.687 ], "P_xyz": [ 1.111, 8.347, 2.778 ], "form": ".", "ssZp": 4.723, "Dp": 4.748, "splay_angle": 28.670, "splay_distance": 4.325, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 150.903, "theta": -163.801, "eta_prime": 152.284, "theta_prime": -155.294, "eta_base": 172.222, "theta_base": -146.691, "v0": 5.209, "v1": -26.102, "v2": 35.943, "v3": -33.940, "v4": 18.127, "amplitude": 36.570, "phase_angle": 10.627, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.153, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 178.502, 131.389, 117.125 ], "x_axis": [ 0.604, -0.385, -0.697 ], "y_axis": [ -0.396, 0.615, -0.682 ], "z_axis": [ 0.692, 0.688, 0.219 ], "quaternion": [ 0.781, -0.439, 0.445, 0.003 ] } }, { "index": 643, "index_chain": 643, "chain_name": "2", "nt_resnum": 790, "nt_name": "C", "nt_code": "C", "nt_id": "///2/790", "linked_nts": [ "///2/789", "///2/791" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -55.174, "beta": 160.608, "gamma": 50.015, "delta": 82.721, "epsilon": -136.830, "zeta": -114.215, "epsilon_zeta": -22.615, "bb_type": "--", "chi": -164.576, "glyco_bond": "anti", "C5prime_xyz": [ -1.080, 8.643, 0.823 ], "P_xyz": [ 1.541, 8.642, 0.953 ], "form": ".", "ssZp": 4.514, "Dp": 4.709, "splay_angle": 32.755, "splay_distance": 5.050, "splay_ratio": 0.282, "d22": 5.499, "d64": 5.775, "eta": 174.387, "theta": -170.233, "eta_prime": 176.433, "theta_prime": -167.691, "eta_base": -174.942, "theta_base": -167.845, "v0": 4.767, "v1": -25.812, "v2": 35.930, "v3": -34.156, "v4": 18.556, "amplitude": 36.642, "phase_angle": 11.318, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.198, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 180.411, 132.986, 120.662 ], "x_axis": [ 0.336, -0.226, -0.914 ], "y_axis": [ -0.515, 0.769, -0.379 ], "z_axis": [ 0.789, 0.598, 0.142 ], "quaternion": [ 0.749, -0.326, 0.568, 0.096 ] } }, { "index": 644, "index_chain": 644, "chain_name": "2", "nt_resnum": 791, "nt_name": "C", "nt_code": "C", "nt_id": "///2/791", "linked_nts": [ "///2/790", "///2/792" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -51.099, "beta": 143.722, "gamma": 60.365, "delta": 82.009, "epsilon": -144.332, "zeta": -67.061, "epsilon_zeta": -77.271, "bb_type": "BI", "chi": -164.902, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.751, 0.812 ], "P_xyz": [ 1.222, 8.856, 0.413 ], "form": ".", "ssZp": 4.472, "Dp": 4.611, "splay_angle": 27.335, "splay_distance": 4.275, "splay_ratio": 0.236, "d22": 3.902, "d64": 3.914, "eta": 175.070, "theta": -129.542, "eta_prime": 179.723, "theta_prime": -131.866, "eta_base": -176.258, "theta_base": -90.117, "v0": 1.221, "v1": -22.962, "v2": 34.723, "v3": -34.975, "v4": 21.310, "amplitude": 36.256, "phase_angle": 16.720, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.487, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 183.212, 134.622, 124.532 ], "x_axis": [ 0.230, -0.174, -0.957 ], "y_axis": [ -0.508, 0.817, -0.271 ], "z_axis": [ 0.830, 0.549, 0.100 ], "quaternion": [ 0.733, -0.280, 0.610, 0.114 ] } }, { "index": 645, "index_chain": 645, "chain_name": "2", "nt_resnum": 792, "nt_name": "C", "nt_code": "C", "nt_id": "///2/792", "linked_nts": [ "///2/791", "///2/793" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.763, "beta": 166.766, "gamma": 55.950, "delta": 83.380, "epsilon": -83.206, "zeta": -131.505, "epsilon_zeta": 48.299, "bb_type": "--", "chi": -160.881, "glyco_bond": "anti", "C5prime_xyz": [ -1.251, 8.738, 0.591 ], "P_xyz": [ 1.367, 8.961, 0.632 ], "form": ".", "ssZp": 3.836, "Dp": 4.596, "splay_angle": 50.029, "splay_distance": 7.763, "splay_ratio": 0.429, "d22": null, "d64": null, "eta": -174.114, "theta": -137.579, "eta_prime": -158.002, "theta_prime": -124.323, "eta_base": -101.273, "theta_base": -89.498, "v0": 2.629, "v1": -23.731, "v2": 34.586, "v3": -34.008, "v4": 19.810, "amplitude": 35.718, "phase_angle": 14.464, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.951, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 186.520, 136.187, 122.322 ], "x_axis": [ -0.249, 0.480, -0.841 ], "y_axis": [ -0.464, 0.703, 0.539 ], "z_axis": [ 0.850, 0.524, 0.048 ], "quaternion": [ 0.613, 0.006, 0.690, 0.385 ] } }, { "index": 646, "index_chain": 646, "chain_name": "2", "nt_resnum": 793, "nt_name": "G", "nt_code": "G", "nt_id": "///2/793", "linked_nts": [ "///2/792", "///2/794" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -37.709, "beta": 129.351, "gamma": 51.346, "delta": 81.962, "epsilon": -133.466, "zeta": -75.775, "epsilon_zeta": -57.691, "bb_type": "BI", "chi": -171.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.195, 8.519, 1.228 ], "P_xyz": [ 1.365, 8.158, 0.790 ], "form": ".", "ssZp": 4.682, "Dp": 4.757, "splay_angle": 29.700, "splay_distance": 4.676, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 170.832, "theta": -124.995, "eta_prime": -173.116, "theta_prime": -127.949, "eta_base": -135.331, "theta_base": -109.943, "v0": 5.886, "v1": -27.148, "v2": 36.986, "v3": -34.611, "v4": 18.123, "amplitude": 37.536, "phase_angle": 9.818, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.057, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 189.982, 143.115, 121.797 ], "x_axis": [ -0.893, 0.382, -0.238 ], "y_axis": [ -0.318, -0.162, 0.934 ], "z_axis": [ 0.318, 0.910, 0.266 ], "quaternion": [ 0.230, 0.026, 0.605, 0.762 ] } }, { "index": 647, "index_chain": 647, "chain_name": "2", "nt_resnum": 794, "nt_name": "A", "nt_code": "A", "nt_id": "///2/794", "linked_nts": [ "///2/793", "///2/795" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet", "alpha": -57.446, "beta": 154.831, "gamma": 71.981, "delta": 80.032, "epsilon": -169.508, "zeta": -93.657, "epsilon_zeta": -75.850, "bb_type": "BI", "chi": -174.844, "glyco_bond": "anti", "C5prime_xyz": [ -1.838, 8.589, 1.347 ], "P_xyz": [ 0.683, 9.279, 1.175 ], "form": ".", "ssZp": 4.390, "Dp": 4.422, "splay_angle": 38.520, "splay_distance": 5.476, "splay_ratio": 0.330, "d22": null, "d64": null, "eta": 171.763, "theta": 177.510, "eta_prime": -161.959, "theta_prime": 177.598, "eta_base": -113.788, "theta_base": -171.244, "v0": -0.842, "v1": -21.893, "v2": 34.966, "v3": -36.449, "v4": 23.497, "amplitude": 37.179, "phase_angle": 19.872, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.393, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 190.011, 147.749, 121.171 ], "x_axis": [ -0.905, 0.259, 0.339 ], "y_axis": [ 0.217, -0.404, 0.889 ], "z_axis": [ 0.367, 0.877, 0.309 ], "quaternion": [ 0.013, 0.218, 0.546, 0.809 ] } }, { "index": 648, "index_chain": 648, "chain_name": "2", "nt_resnum": 795, "nt_name": "A", "nt_code": "A", "nt_id": "///2/795", "linked_nts": [ "///2/794", "///2/796" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-stack,ss-non-loop", "alpha": -79.827, "beta": -148.812, "gamma": 35.371, "delta": 80.252, "epsilon": -126.981, "zeta": -47.661, "epsilon_zeta": -79.321, "bb_type": "--", "chi": 149.666, "glyco_bond": "--", "C5prime_xyz": [ -1.826, 7.286, 3.025 ], "P_xyz": [ -0.565, 6.349, 5.127 ], "form": ".", "ssZp": 4.360, "Dp": 4.818, "splay_angle": 30.618, "splay_distance": 5.220, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 171.716, "theta": -109.005, "eta_prime": 155.154, "theta_prime": -103.129, "eta_base": 160.873, "theta_base": -64.191, "v0": 7.916, "v1": -29.677, "v2": 39.048, "v3": -35.488, "v4": 17.383, "amplitude": 39.363, "phase_angle": 7.245, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.364, "filter_rmsd": 0.044, "frame": { "rmsd": 0.013, "origin": [ 194.061, 150.781, 119.074 ], "x_axis": [ -0.809, -0.587, -0.009 ], "y_axis": [ 0.530, -0.736, 0.421 ], "z_axis": [ -0.253, 0.336, 0.907 ], "quaternion": [ -0.301, -0.070, 0.204, 0.929 ] } }, { "index": 649, "index_chain": 649, "chain_name": "2", "nt_resnum": 796, "nt_name": "G", "nt_code": "G", "nt_id": "///2/796", "linked_nts": [ "///2/795", "///2/797" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet", "alpha": -84.978, "beta": -146.855, "gamma": 41.070, "delta": 79.525, "epsilon": -179.298, "zeta": -97.886, "epsilon_zeta": -81.412, "bb_type": "BI", "chi": -159.812, "glyco_bond": "anti", "C5prime_xyz": [ -1.648, 8.905, 0.448 ], "P_xyz": [ 0.321, 9.843, 1.907 ], "form": ".", "ssZp": 4.206, "Dp": 4.285, "splay_angle": 28.972, "splay_distance": 4.573, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 153.807, "theta": -177.401, "eta_prime": 177.609, "theta_prime": -165.150, "eta_base": -125.472, "theta_base": -160.207, "v0": -2.685, "v1": -19.911, "v2": 33.548, "v3": -36.079, "v4": 24.467, "amplitude": 36.381, "phase_angle": 22.762, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.312, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 189.445, 151.744, 121.313 ], "x_axis": [ -0.065, -0.971, 0.228 ], "y_axis": [ 0.985, -0.026, 0.171 ], "z_axis": [ -0.160, 0.236, 0.959 ], "quaternion": [ 0.683, -0.024, -0.142, -0.716 ] } }, { "index": 650, "index_chain": 650, "chain_name": "2", "nt_resnum": 797, "nt_name": "C", "nt_code": "C", "nt_id": "///2/797", "linked_nts": [ "///2/796", "///2/798" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,cap-donor", "alpha": -169.315, "beta": -161.392, "gamma": 163.512, "delta": 148.409, "epsilon": -148.145, "zeta": -103.164, "epsilon_zeta": -44.981, "bb_type": "BI", "chi": -151.833, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.622, 0.567 ], "P_xyz": [ 1.091, 9.224, -0.061 ], "form": ".", "ssZp": 1.678, "Dp": 1.850, "splay_angle": 39.001, "splay_distance": 6.125, "splay_ratio": 0.341, "d22": null, "d64": null, "eta": -164.205, "theta": -98.596, "eta_prime": -150.132, "theta_prime": -116.053, "eta_base": -155.617, "theta_base": -56.744, "v0": -16.980, "v1": 32.259, "v2": -34.346, "v3": 25.422, "v4": -5.508, "amplitude": 34.858, "phase_angle": 170.174, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.327, "filter_rmsd": 0.066, "frame": { "rmsd": 0.009, "origin": [ 186.942, 154.918, 123.450 ], "x_axis": [ 0.241, -0.968, 0.065 ], "y_axis": [ 0.938, 0.250, 0.241 ], "z_axis": [ -0.250, 0.003, 0.968 ], "quaternion": [ 0.784, 0.076, -0.100, -0.608 ] } }, { "index": 651, "index_chain": 651, "chain_name": "2", "nt_resnum": 798, "nt_name": "G", "nt_code": "G", "nt_id": "///2/798", "linked_nts": [ "///2/797", "///2/799" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-acceptor,splayed-apart", "alpha": 155.225, "beta": -137.901, "gamma": 156.510, "delta": 148.823, "epsilon": -114.406, "zeta": -27.330, "epsilon_zeta": -87.076, "bb_type": "--", "chi": -103.248, "glyco_bond": "anti", "C5prime_xyz": [ -2.012, 8.155, -1.971 ], "P_xyz": [ 0.076, 7.539, -3.439 ], "form": ".", "ssZp": 0.995, "Dp": 1.231, "splay_angle": 144.961, "splay_distance": 20.695, "splay_ratio": 0.954, "d22": null, "d64": null, "eta": 166.561, "theta": -3.445, "eta_prime": -139.751, "theta_prime": -45.491, "eta_base": -81.057, "theta_base": -66.609, "v0": -18.890, "v1": 34.129, "v2": -35.480, "v3": 25.492, "v4": -4.352, "amplitude": 36.270, "phase_angle": 168.018, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 190.090, 154.850, 128.703 ], "x_axis": [ 0.951, -0.138, 0.275 ], "y_axis": [ 0.105, 0.986, 0.133 ], "z_axis": [ -0.289, -0.097, 0.952 ], "quaternion": [ 0.986, 0.058, -0.143, -0.062 ] } }, { "index": 652, "index_chain": 652, "chain_name": "2", "nt_resnum": 799, "nt_name": "U", "nt_code": "U", "nt_id": "///2/799", "linked_nts": [ "///2/798", "///2/800" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart", "alpha": 173.743, "beta": -134.751, "gamma": -82.430, "delta": 81.438, "epsilon": -172.676, "zeta": -78.373, "epsilon_zeta": -94.303, "bb_type": "BI", "chi": -134.543, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.660, -0.998 ], "P_xyz": [ -2.069, 11.061, -1.928 ], "form": ".", "ssZp": 3.580, "Dp": 4.396, "splay_angle": 24.222, "splay_distance": 4.085, "splay_ratio": 0.212, "d22": 4.107, "d64": 4.511, "eta": -60.110, "theta": 171.170, "eta_prime": -30.809, "theta_prime": -176.401, "eta_base": 3.963, "theta_base": -140.829, "v0": 0.868, "v1": -22.672, "v2": 34.610, "v3": -35.023, "v4": 21.576, "amplitude": 36.238, "phase_angle": 17.243, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 185.646, 174.361, 133.983 ], "x_axis": [ -0.647, -0.127, 0.752 ], "y_axis": [ -0.012, -0.984, -0.177 ], "z_axis": [ 0.763, -0.123, 0.635 ], "quaternion": [ -0.032, 0.419, -0.083, 0.904 ] } }, { "index": 653, "index_chain": 653, "chain_name": "2", "nt_resnum": 800, "nt_name": "U", "nt_code": "U", "nt_id": "///2/800", "linked_nts": [ "///2/799", "///2/801" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end", "alpha": 151.546, "beta": -144.087, "gamma": 175.491, "delta": 81.221, "epsilon": -125.825, "zeta": -59.361, "epsilon_zeta": -66.464, "bb_type": "--", "chi": -161.995, "glyco_bond": "anti", "C5prime_xyz": [ -1.337, 8.685, 0.656 ], "P_xyz": [ 0.144, 9.850, -1.170 ], "form": ".", "ssZp": 4.386, "Dp": 4.729, "splay_angle": 34.240, "splay_distance": 6.049, "splay_ratio": 0.305, "d22": 4.183, "d64": 4.901, "eta": 170.729, "theta": -110.724, "eta_prime": -171.963, "theta_prime": -129.257, "eta_base": -129.561, "theta_base": -109.226, "v0": 3.074, "v1": -24.805, "v2": 35.952, "v3": -35.152, "v4": 20.225, "amplitude": 37.046, "phase_angle": 13.957, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.738, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 186.864, 174.108, 137.874 ], "x_axis": [ -0.611, -0.575, 0.544 ], "y_axis": [ 0.394, -0.817, -0.421 ], "z_axis": [ 0.687, -0.043, 0.725 ], "quaternion": [ -0.273, 0.347, -0.131, 0.888 ] } }, { "index": 654, "index_chain": 654, "chain_name": "2", "nt_resnum": 801, "nt_name": "U", "nt_code": "U", "nt_id": "///2/801", "linked_nts": [ "///2/800", "///2/802" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 161.480, "beta": 166.035, "gamma": 173.203, "delta": 80.797, "epsilon": -138.190, "zeta": -82.022, "epsilon_zeta": -56.168, "bb_type": "BI", "chi": -172.541, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.543, 1.272 ], "P_xyz": [ -0.395, 10.734, 0.260 ], "form": "A", "ssZp": 4.676, "Dp": 4.711, "splay_angle": 22.253, "splay_distance": 3.463, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 140.593, "theta": 178.466, "eta_prime": 164.127, "theta_prime": -172.265, "eta_base": -153.023, "theta_base": -137.289, "v0": 3.431, "v1": -25.448, "v2": 36.594, "v3": -35.608, "v4": 20.281, "amplitude": 37.631, "phase_angle": 13.486, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.220, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 186.821, 172.008, 143.547 ], "x_axis": [ -0.621, -0.711, -0.330 ], "y_axis": [ 0.675, -0.271, -0.686 ], "z_axis": [ 0.399, -0.649, 0.648 ], "quaternion": [ -0.435, 0.021, -0.419, 0.797 ] } }, { "index": 655, "index_chain": 655, "chain_name": "2", "nt_resnum": 802, "nt_name": "A", "nt_code": "A", "nt_id": "///2/802", "linked_nts": [ "///2/801", "///2/803" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -61.884, "beta": 163.854, "gamma": 56.504, "delta": 83.383, "epsilon": -137.315, "zeta": -62.703, "epsilon_zeta": -74.612, "bb_type": "BI", "chi": -173.467, "glyco_bond": "anti", "C5prime_xyz": [ -1.556, 8.578, 1.306 ], "P_xyz": [ 1.008, 8.895, 1.783 ], "form": ".", "ssZp": 4.538, "Dp": 4.613, "splay_angle": 33.061, "splay_distance": 5.129, "splay_ratio": 0.285, "d22": null, "d64": null, "eta": 168.921, "theta": -122.635, "eta_prime": -178.462, "theta_prime": -119.724, "eta_base": -137.118, "theta_base": -71.187, "v0": 0.328, "v1": -21.572, "v2": 33.411, "v3": -34.045, "v4": 21.390, "amplitude": 35.143, "phase_angle": 18.062, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.850, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 186.487, 169.804, 146.197 ], "x_axis": [ -0.200, -0.565, -0.800 ], "y_axis": [ 0.917, 0.179, -0.357 ], "z_axis": [ 0.345, -0.805, 0.482 ], "quaternion": [ 0.604, 0.185, 0.474, -0.613 ] } }, { "index": 656, "index_chain": 656, "chain_name": "2", "nt_resnum": 803, "nt_name": "C", "nt_code": "C", "nt_id": "///2/803", "linked_nts": [ "///2/802", "///2/804" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor", "alpha": -62.566, "beta": 169.030, "gamma": 52.740, "delta": 83.921, "epsilon": -113.089, "zeta": -101.437, "epsilon_zeta": -11.652, "bb_type": "--", "chi": -168.108, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.685, 1.027 ], "P_xyz": [ 1.204, 8.887, 1.601 ], "form": ".", "ssZp": 4.355, "Dp": 4.618, "splay_angle": 27.998, "splay_distance": 4.427, "splay_ratio": 0.245, "d22": 4.499, "d64": 4.173, "eta": 172.237, "theta": -136.345, "eta_prime": -165.121, "theta_prime": -129.343, "eta_base": -98.014, "theta_base": -86.103, "v0": 0.869, "v1": -21.687, "v2": 33.050, "v3": -33.501, "v4": 20.584, "amplitude": 34.602, "phase_angle": 17.221, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.884, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 187.965, 165.021, 145.080 ], "x_axis": [ 0.621, -0.031, -0.783 ], "y_axis": [ 0.615, 0.639, 0.463 ], "z_axis": [ 0.486, -0.769, 0.416 ], "quaternion": [ 0.818, 0.376, 0.388, -0.197 ] } }, { "index": 657, "index_chain": 657, "chain_name": "2", "nt_resnum": 804, "nt_name": "U", "nt_code": "U", "nt_id": "///2/804", "linked_nts": [ "///2/803", "///2/805" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,phosphate", "alpha": -44.257, "beta": 135.588, "gamma": 54.965, "delta": 81.388, "epsilon": -112.058, "zeta": -101.921, "epsilon_zeta": -10.137, "bb_type": "--", "chi": -159.384, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.695, 0.499 ], "P_xyz": [ 1.191, 8.571, -0.154 ], "form": "A", "ssZp": 4.184, "Dp": 4.758, "splay_angle": 25.855, "splay_distance": 4.144, "splay_ratio": 0.224, "d22": 4.297, "d64": 3.836, "eta": 170.258, "theta": -139.625, "eta_prime": -171.554, "theta_prime": -141.918, "eta_base": -117.502, "theta_base": -132.637, "v0": 3.444, "v1": -25.217, "v2": 36.245, "v3": -35.260, "v4": 20.059, "amplitude": 37.265, "phase_angle": 13.441, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.792, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 191.489, 162.382, 145.548 ], "x_axis": [ 0.860, 0.440, -0.257 ], "y_axis": [ 0.051, 0.428, 0.902 ], "z_axis": [ 0.508, -0.789, 0.346 ], "quaternion": [ 0.811, 0.521, 0.236, 0.120 ] } }, { "index": 658, "index_chain": 658, "chain_name": "2", "nt_resnum": 805, "nt_name": "U", "nt_code": "U", "nt_id": "///2/805", "linked_nts": [ "///2/804", "///2/806" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,phosphate", "alpha": -66.882, "beta": 152.818, "gamma": 54.499, "delta": 80.360, "epsilon": -152.363, "zeta": -69.418, "epsilon_zeta": -82.945, "bb_type": "BI", "chi": -165.214, "glyco_bond": "anti", "C5prime_xyz": [ -1.592, 8.722, 0.801 ], "P_xyz": [ 0.996, 9.112, 0.723 ], "form": ".", "ssZp": 4.482, "Dp": 4.580, "splay_angle": 29.261, "splay_distance": 4.558, "splay_ratio": 0.253, "d22": 4.376, "d64": 4.784, "eta": 153.132, "theta": -141.092, "eta_prime": 164.913, "theta_prime": -141.932, "eta_base": -169.208, "theta_base": -111.976, "v0": 0.586, "v1": -23.184, "v2": 35.644, "v3": -36.284, "v4": 22.513, "amplitude": 37.417, "phase_angle": 17.708, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.152, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 193.908, 159.070, 146.138 ], "x_axis": [ 0.322, 0.944, -0.076 ], "y_axis": [ -0.315, 0.182, 0.932 ], "z_axis": [ 0.893, -0.277, 0.356 ], "quaternion": [ 0.682, 0.443, 0.355, 0.461 ] } }, { "index": 659, "index_chain": 659, "chain_name": "2", "nt_resnum": 806, "nt_name": "U", "nt_code": "U", "nt_id": "///2/806", "linked_nts": [ "///2/805", "///2/807" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -62.385, "beta": 169.209, "gamma": 61.921, "delta": 80.732, "epsilon": -138.642, "zeta": -88.871, "epsilon_zeta": -49.771, "bb_type": "BI", "chi": -167.526, "glyco_bond": "anti", "C5prime_xyz": [ -1.428, 8.650, 0.975 ], "P_xyz": [ 1.165, 9.048, 1.080 ], "form": ".", "ssZp": 4.564, "Dp": 4.682, "splay_angle": 18.928, "splay_distance": 3.074, "splay_ratio": 0.168, "d22": null, "d64": null, "eta": 176.552, "theta": -152.170, "eta_prime": -167.446, "theta_prime": -152.350, "eta_base": -120.257, "theta_base": -149.635, "v0": 2.284, "v1": -24.386, "v2": 36.039, "v3": -35.718, "v4": 21.089, "amplitude": 37.346, "phase_angle": 15.201, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.859, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 198.440, 159.227, 146.595 ], "x_axis": [ 0.088, 0.838, 0.539 ], "y_axis": [ -0.525, -0.421, 0.740 ], "z_axis": [ 0.847, -0.348, 0.402 ], "quaternion": [ 0.517, 0.526, 0.149, 0.659 ] } }, { "index": 660, "index_chain": 660, "chain_name": "2", "nt_resnum": 807, "nt_name": "G", "nt_code": "G", "nt_id": "///2/807", "linked_nts": [ "///2/806", "///2/808" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.639, "beta": 164.715, "gamma": 50.461, "delta": 82.271, "epsilon": -152.247, "zeta": -80.805, "epsilon_zeta": -71.442, "bb_type": "BI", "chi": -158.706, "glyco_bond": "anti", "C5prime_xyz": [ -1.609, 8.853, 0.448 ], "P_xyz": [ 0.940, 9.395, 0.722 ], "form": "A", "ssZp": 4.273, "Dp": 4.475, "splay_angle": 21.691, "splay_distance": 3.498, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 163.302, "theta": -151.801, "eta_prime": 172.328, "theta_prime": -151.057, "eta_base": -173.270, "theta_base": -128.862, "v0": -1.676, "v1": -19.950, "v2": 32.673, "v3": -34.580, "v4": 22.885, "amplitude": 35.066, "phase_angle": 21.293, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.737, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 201.354, 158.707, 145.766 ], "x_axis": [ -0.384, 0.652, 0.653 ], "y_axis": [ -0.343, -0.758, 0.555 ], "z_axis": [ 0.857, -0.011, 0.515 ], "quaternion": [ 0.305, 0.463, 0.167, 0.815 ] } }, { "index": 661, "index_chain": 661, "chain_name": "2", "nt_resnum": 808, "nt_name": "A", "nt_code": "A", "nt_id": "///2/808", "linked_nts": [ "///2/807", "///2/809" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -58.418, "beta": 160.603, "gamma": 61.179, "delta": 86.197, "epsilon": -149.169, "zeta": -63.074, "epsilon_zeta": -86.095, "bb_type": "BI", "chi": -157.857, "glyco_bond": "anti", "C5prime_xyz": [ -1.751, 8.801, 0.402 ], "P_xyz": [ 0.821, 9.322, 0.472 ], "form": ".", "ssZp": 4.068, "Dp": 4.308, "splay_angle": 28.069, "splay_distance": 4.456, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 175.108, "theta": -130.032, "eta_prime": -170.426, "theta_prime": -131.035, "eta_base": -137.014, "theta_base": -78.444, "v0": -3.620, "v1": -16.390, "v2": 28.855, "v3": -31.787, "v4": 22.352, "amplitude": 31.832, "phase_angle": 24.978, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.772, "filter_rmsd": 0.036, "frame": { "rmsd": 0.007, "origin": [ 204.503, 159.699, 146.921 ], "x_axis": [ -0.540, 0.223, 0.811 ], "y_axis": [ -0.074, -0.973, 0.218 ], "z_axis": [ 0.838, 0.058, 0.542 ], "quaternion": [ 0.085, 0.472, 0.079, 0.874 ] } }, { "index": 662, "index_chain": 662, "chain_name": "2", "nt_resnum": 809, "nt_name": "A", "nt_code": "A", "nt_id": "///2/809", "linked_nts": [ "///2/808", "///2/810" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -78.297, "beta": 176.333, "gamma": 56.351, "delta": 83.572, "epsilon": -125.961, "zeta": -42.500, "epsilon_zeta": -83.461, "bb_type": "--", "chi": -141.641, "glyco_bond": "anti", "C5prime_xyz": [ -1.121, 8.598, -0.556 ], "P_xyz": [ 1.471, 8.689, -0.948 ], "form": ".", "ssZp": 3.526, "Dp": 4.763, "splay_angle": 26.628, "splay_distance": 4.747, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 164.738, "theta": -113.103, "eta_prime": -176.109, "theta_prime": -116.452, "eta_base": -109.145, "theta_base": -107.326, "v0": 6.111, "v1": -26.760, "v2": 36.126, "v3": -33.608, "v4": 17.377, "amplitude": 36.602, "phase_angle": 9.253, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.790, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 205.964, 159.120, 151.091 ], "x_axis": [ -0.365, -0.675, 0.642 ], "y_axis": [ 0.546, -0.713, -0.440 ], "z_axis": [ 0.754, 0.190, 0.628 ], "quaternion": [ -0.371, 0.424, -0.076, 0.823 ] } }, { "index": 663, "index_chain": 663, "chain_name": "2", "nt_resnum": 810, "nt_name": "A", "nt_code": "A", "nt_id": "///2/810", "linked_nts": [ "///2/809", "///2/811" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": -104.071, "beta": 114.146, "gamma": 151.143, "delta": 81.646, "epsilon": -150.247, "zeta": 76.168, "epsilon_zeta": 133.586, "bb_type": "--", "chi": -169.277, "glyco_bond": "anti", "C5prime_xyz": [ -1.532, 8.642, 1.059 ], "P_xyz": [ -1.172, 10.499, -0.762 ], "form": ".", "ssZp": 4.525, "Dp": 4.575, "splay_angle": 125.749, "splay_distance": 16.690, "splay_ratio": 0.890, "d22": null, "d64": null, "eta": -164.732, "theta": -37.093, "eta_prime": -149.644, "theta_prime": -49.474, "eta_base": -120.008, "theta_base": -142.569, "v0": 0.394, "v1": -22.313, "v2": 34.474, "v3": -35.228, "v4": 21.980, "amplitude": 36.251, "phase_angle": 18.013, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.034, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 207.134, 158.461, 155.645 ], "x_axis": [ -0.176, -0.874, 0.452 ], "y_axis": [ 0.681, -0.440, -0.586 ], "z_axis": [ 0.711, 0.205, 0.673 ], "quaternion": [ 0.514, -0.384, 0.126, -0.757 ] } }, { "index": 664, "index_chain": 664, "chain_name": "2", "nt_resnum": 811, "nt_name": "A", "nt_code": "A", "nt_id": "///2/811", "linked_nts": [ "///2/810", "///2/812" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,splayed-apart", "alpha": -154.098, "beta": -141.867, "gamma": -177.578, "delta": 81.666, "epsilon": -124.983, "zeta": -85.767, "epsilon_zeta": -39.216, "bb_type": "--", "chi": 175.389, "glyco_bond": "anti", "C5prime_xyz": [ -1.489, 8.224, 1.928 ], "P_xyz": [ 0.205, 9.931, 0.893 ], "form": "A", "ssZp": 4.765, "Dp": 4.764, "splay_angle": 25.395, "splay_distance": 3.852, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": -90.102, "theta": -161.682, "eta_prime": -50.894, "theta_prime": -157.789, "eta_base": 53.357, "theta_base": -120.018, "v0": 4.549, "v1": -26.091, "v2": 36.581, "v3": -34.973, "v4": 19.186, "amplitude": 37.371, "phase_angle": 11.800, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 223.209, 160.958, 159.371 ], "x_axis": [ -0.286, 0.953, 0.095 ], "y_axis": [ -0.713, -0.146, -0.686 ], "z_axis": [ -0.640, -0.264, 0.721 ], "quaternion": [ 0.568, -0.186, -0.324, 0.734 ] } }, { "index": 665, "index_chain": 665, "chain_name": "2", "nt_resnum": 812, "nt_name": "A", "nt_code": "A", "nt_id": "///2/812", "linked_nts": [ "///2/811", "///2/813" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -59.651, "beta": 153.654, "gamma": 61.575, "delta": 81.598, "epsilon": -135.702, "zeta": -71.375, "epsilon_zeta": -64.326, "bb_type": "BI", "chi": -179.466, "glyco_bond": "anti", "C5prime_xyz": [ -1.571, 8.412, 1.635 ], "P_xyz": [ 1.032, 8.699, 1.748 ], "form": "A", "ssZp": 4.685, "Dp": 4.697, "splay_angle": 26.236, "splay_distance": 4.012, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 166.279, "theta": -130.980, "eta_prime": -176.091, "theta_prime": -131.756, "eta_base": -123.038, "theta_base": -90.519, "v0": 2.472, "v1": -24.396, "v2": 35.777, "v3": -35.326, "v4": 20.736, "amplitude": 37.013, "phase_angle": 14.850, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.530, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 221.579, 161.570, 162.807 ], "x_axis": [ -0.667, 0.638, -0.386 ], "y_axis": [ -0.334, -0.718, -0.610 ], "z_axis": [ -0.667, -0.278, 0.692 ], "quaternion": [ 0.277, -0.300, -0.253, 0.877 ] } }, { "index": 666, "index_chain": 666, "chain_name": "2", "nt_resnum": 813, "nt_name": "A", "nt_code": "A", "nt_id": "///2/813", "linked_nts": [ "///2/812", "///2/814" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -69.225, "beta": 165.057, "gamma": 61.414, "delta": 82.355, "epsilon": -140.731, "zeta": -53.931, "epsilon_zeta": -86.800, "bb_type": "BI", "chi": -173.874, "glyco_bond": "anti", "C5prime_xyz": [ -1.447, 8.505, 1.339 ], "P_xyz": [ 1.152, 8.801, 1.538 ], "form": ".", "ssZp": 4.642, "Dp": 4.674, "splay_angle": 32.925, "splay_distance": 5.079, "splay_ratio": 0.285, "d22": null, "d64": null, "eta": 163.360, "theta": -118.526, "eta_prime": -176.189, "theta_prime": -117.249, "eta_base": -111.230, "theta_base": -70.566, "v0": 3.146, "v1": -24.659, "v2": 35.576, "v3": -34.748, "v4": 19.938, "amplitude": 36.632, "phase_angle": 13.794, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.817, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 218.098, 162.459, 164.593 ], "x_axis": [ -0.681, -0.100, -0.726 ], "y_axis": [ 0.281, -0.950, -0.134 ], "z_axis": [ -0.676, -0.295, 0.675 ], "quaternion": [ -0.105, -0.385, -0.118, 0.909 ] } }, { "index": 667, "index_chain": 667, "chain_name": "2", "nt_resnum": 814, "nt_name": "U", "nt_code": "U", "nt_id": "///2/814", "linked_nts": [ "///2/813", "///2/815" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -74.726, "beta": 176.230, "gamma": 59.519, "delta": 81.450, "epsilon": -134.549, "zeta": -64.789, "epsilon_zeta": -69.759, "bb_type": "BI", "chi": -162.748, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.680, 0.692 ], "P_xyz": [ 1.222, 9.065, 0.824 ], "form": ".", "ssZp": 4.468, "Dp": 4.712, "splay_angle": 42.183, "splay_distance": 6.510, "splay_ratio": 0.360, "d22": 3.939, "d64": 4.094, "eta": 164.302, "theta": -126.181, "eta_prime": -169.932, "theta_prime": -123.546, "eta_base": -98.493, "theta_base": -89.723, "v0": 3.215, "v1": -25.079, "v2": 36.241, "v3": -35.371, "v4": 20.269, "amplitude": 37.314, "phase_angle": 13.776, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 213.489, 160.386, 164.093 ], "x_axis": [ -0.116, -0.864, -0.490 ], "y_axis": [ 0.695, -0.423, 0.581 ], "z_axis": [ -0.709, -0.273, 0.650 ], "quaternion": [ 0.527, 0.405, -0.104, -0.740 ] } }, { "index": 668, "index_chain": 668, "chain_name": "2", "nt_resnum": 815, "nt_name": "U", "nt_code": "U", "nt_id": "///2/815", "linked_nts": [ "///2/814", "///2/816" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,internal-loop,phosphate", "alpha": -67.469, "beta": -166.025, "gamma": 43.356, "delta": 81.455, "epsilon": -135.173, "zeta": -79.598, "epsilon_zeta": -55.576, "bb_type": "BI", "chi": -179.158, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.404, 1.654 ], "P_xyz": [ 0.784, 8.528, 3.123 ], "form": "A", "ssZp": 4.705, "Dp": 4.711, "splay_angle": 17.558, "splay_distance": 2.738, "splay_ratio": 0.155, "d22": null, "d64": null, "eta": 168.383, "theta": -144.383, "eta_prime": -177.325, "theta_prime": -138.258, "eta_base": -129.531, "theta_base": -105.283, "v0": 3.493, "v1": -25.078, "v2": 35.932, "v3": -34.909, "v4": 19.814, "amplitude": 36.923, "phase_angle": 13.305, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.666, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 209.907, 155.375, 166.201 ], "x_axis": [ 0.797, -0.468, -0.383 ], "y_axis": [ 0.604, 0.625, 0.494 ], "z_axis": [ 0.008, -0.625, 0.781 ], "quaternion": [ 0.895, 0.313, 0.109, -0.299 ] } }, { "index": 669, "index_chain": 669, "chain_name": "2", "nt_resnum": 816, "nt_name": "A", "nt_code": "A", "nt_id": "///2/816", "linked_nts": [ "///2/815", "///2/817" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate", "alpha": -74.122, "beta": 171.337, "gamma": 57.696, "delta": 84.633, "epsilon": -144.334, "zeta": -62.027, "epsilon_zeta": -82.307, "bb_type": "BI", "chi": -163.659, "glyco_bond": "anti", "C5prime_xyz": [ -1.285, 8.670, 0.787 ], "P_xyz": [ 1.310, 8.910, 1.110 ], "form": ".", "ssZp": 4.407, "Dp": 4.573, "splay_angle": 36.078, "splay_distance": 5.560, "splay_ratio": 0.310, "d22": null, "d64": null, "eta": 161.473, "theta": -126.692, "eta_prime": 175.179, "theta_prime": -122.405, "eta_base": -141.724, "theta_base": -79.620, "v0": 2.297, "v1": -22.777, "v2": 33.361, "v3": -32.964, "v4": 19.395, "amplitude": 34.519, "phase_angle": 14.881, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.815, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 209.683, 152.766, 167.000 ], "x_axis": [ 0.982, 0.153, -0.109 ], "y_axis": [ -0.018, 0.655, 0.755 ], "z_axis": [ 0.187, -0.740, 0.646 ], "quaternion": [ 0.906, 0.412, 0.082, 0.047 ] } }, { "index": 670, "index_chain": 670, "chain_name": "2", "nt_resnum": 817, "nt_name": "G", "nt_code": "G", "nt_id": "///2/817", "linked_nts": [ "///2/816", "///2/818" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -62.955, "beta": 164.881, "gamma": 63.478, "delta": 83.132, "epsilon": -149.589, "zeta": -94.897, "epsilon_zeta": -54.692, "bb_type": "BI", "chi": -158.516, "glyco_bond": "anti", "C5prime_xyz": [ -1.092, 8.690, 0.479 ], "P_xyz": [ 1.515, 8.756, 0.143 ], "form": ".", "ssZp": 4.389, "Dp": 4.632, "splay_angle": 35.876, "splay_distance": 5.639, "splay_ratio": 0.308, "d22": null, "d64": null, "eta": 170.784, "theta": -163.316, "eta_prime": -160.858, "theta_prime": -165.284, "eta_base": -95.919, "theta_base": -165.479, "v0": 5.288, "v1": -26.025, "v2": 35.821, "v3": -33.746, "v4": 17.985, "amplitude": 36.430, "phase_angle": 10.493, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.773, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 213.605, 150.673, 170.340 ], "x_axis": [ 0.550, 0.522, 0.652 ], "y_axis": [ -0.832, 0.272, 0.484 ], "z_axis": [ 0.075, -0.808, 0.584 ], "quaternion": [ 0.776, 0.416, -0.186, 0.437 ] } }, { "index": 671, "index_chain": 671, "chain_name": "2", "nt_resnum": 818, "nt_name": "A", "nt_code": "A", "nt_id": "///2/818", "linked_nts": [ "///2/817", "///2/819" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -53.425, "beta": 177.876, "gamma": 36.344, "delta": 81.597, "epsilon": -140.972, "zeta": -78.929, "epsilon_zeta": -62.042, "bb_type": "BI", "chi": -175.097, "glyco_bond": "anti", "C5prime_xyz": [ -1.561, 8.518, 1.412 ], "P_xyz": [ 0.689, 8.870, 2.704 ], "form": "A", "ssZp": 4.597, "Dp": 4.628, "splay_angle": 23.122, "splay_distance": 3.648, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 172.370, "theta": -145.406, "eta_prime": 170.010, "theta_prime": -139.786, "eta_base": 174.543, "theta_base": -105.207, "v0": 1.337, "v1": -23.007, "v2": 34.708, "v3": -34.935, "v4": 21.178, "amplitude": 36.211, "phase_angle": 16.563, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.351, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 214.064, 145.052, 170.333 ], "x_axis": [ 0.366, 0.897, 0.248 ], "y_axis": [ -0.926, 0.326, 0.189 ], "z_axis": [ 0.089, -0.299, 0.950 ], "quaternion": [ 0.813, 0.150, -0.049, 0.561 ] } }, { "index": 672, "index_chain": 672, "chain_name": "2", "nt_resnum": 819, "nt_name": "G", "nt_code": "G", "nt_id": "///2/819", "linked_nts": [ "///2/818", "///2/820" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -52.594, "beta": 166.516, "gamma": 46.465, "delta": 81.484, "epsilon": -137.834, "zeta": -78.678, "epsilon_zeta": -59.156, "bb_type": "BI", "chi": -167.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.710, 0.991 ], "P_xyz": [ 1.024, 9.086, 1.579 ], "form": "A", "ssZp": 4.513, "Dp": 4.635, "splay_angle": 28.004, "splay_distance": 4.414, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 169.818, "theta": -139.658, "eta_prime": -176.509, "theta_prime": -135.874, "eta_base": -130.976, "theta_base": -102.610, "v0": 0.882, "v1": -22.682, "v2": 34.647, "v3": -35.109, "v4": 21.580, "amplitude": 36.280, "phase_angle": 17.257, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.784, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 216.078, 144.558, 173.334 ], "x_axis": [ -0.275, 0.930, 0.243 ], "y_axis": [ -0.959, -0.282, -0.008 ], "z_axis": [ 0.061, -0.236, 0.970 ], "quaternion": [ 0.594, 0.096, -0.077, 0.795 ] } }, { "index": 673, "index_chain": 673, "chain_name": "2", "nt_resnum": 820, "nt_name": "U", "nt_code": "U", "nt_id": "///2/820", "linked_nts": [ "///2/819", "///2/821" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": -52.175, "beta": 168.533, "gamma": 47.019, "delta": 80.412, "epsilon": -118.862, "zeta": -85.770, "epsilon_zeta": -33.092, "bb_type": "--", "chi": -160.691, "glyco_bond": "anti", "C5prime_xyz": [ -1.382, 8.710, 0.568 ], "P_xyz": [ 1.193, 9.116, 0.816 ], "form": ".", "ssZp": 4.292, "Dp": 4.752, "splay_angle": 87.900, "splay_distance": 12.723, "splay_ratio": 0.694, "d22": null, "d64": null, "eta": 175.605, "theta": -133.706, "eta_prime": -171.814, "theta_prime": -136.640, "eta_base": -128.305, "theta_base": -112.094, "v0": 2.522, "v1": -24.719, "v2": 36.312, "v3": -35.867, "v4": 21.028, "amplitude": 37.569, "phase_angle": 14.861, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.775, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 216.581, 145.362, 177.645 ], "x_axis": [ -0.827, 0.555, 0.085 ], "y_axis": [ -0.561, -0.807, -0.184 ], "z_axis": [ -0.034, -0.200, 0.979 ], "quaternion": [ 0.294, 0.013, -0.101, 0.951 ] } }, { "index": 674, "index_chain": 674, "chain_name": "2", "nt_resnum": 821, "nt_name": "G", "nt_code": "G", "nt_id": "///2/821", "linked_nts": [ "///2/820", "///2/822" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,BII,hairpin-loop,splayed-apart", "alpha": -61.872, "beta": 163.382, "gamma": 169.025, "delta": 146.176, "epsilon": -107.798, "zeta": 167.626, "epsilon_zeta": 84.576, "bb_type": "BII", "chi": -82.321, "glyco_bond": "--", "C5prime_xyz": [ -2.558, 7.470, -2.734 ], "P_xyz": [ -2.072, 7.130, -5.286 ], "form": ".", "ssZp": 0.538, "Dp": 1.208, "splay_angle": 84.900, "splay_distance": 14.449, "splay_ratio": 0.675, "d22": null, "d64": null, "eta": -39.031, "theta": 135.574, "eta_prime": -41.611, "theta_prime": 128.559, "eta_base": -61.697, "theta_base": 125.146, "v0": -19.511, "v1": 33.725, "v2": -34.281, "v3": 23.906, "v4": -2.967, "amplitude": 35.336, "phase_angle": 165.971, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 212.473, 140.220, 188.534 ], "x_axis": [ -0.383, -0.783, 0.490 ], "y_axis": [ 0.620, -0.611, -0.491 ], "z_axis": [ 0.684, 0.116, 0.720 ], "quaternion": [ -0.426, 0.357, -0.114, 0.824 ] } }, { "index": 675, "index_chain": 675, "chain_name": "2", "nt_resnum": 822, "nt_name": "U", "nt_code": "U", "nt_id": "///2/822", "linked_nts": [ "///2/821", "///2/823" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 70.822, "beta": 144.078, "gamma": 174.409, "delta": 82.741, "epsilon": -149.480, "zeta": 61.677, "epsilon_zeta": 148.844, "bb_type": "--", "chi": -168.470, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.628, 1.034 ], "P_xyz": [ -0.868, 10.936, -0.086 ], "form": ".", "ssZp": 4.515, "Dp": 4.580, "splay_angle": 90.331, "splay_distance": 10.334, "splay_ratio": 0.730, "d22": 9.631, "d64": 10.409, "eta": 95.109, "theta": -29.451, "eta_prime": 82.209, "theta_prime": -63.392, "eta_base": 99.606, "theta_base": -159.737, "v0": 1.936, "v1": -23.135, "v2": 34.327, "v3": -34.185, "v4": 20.333, "amplitude": 35.636, "phase_angle": 15.575, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 221.742, 149.886, 183.111 ], "x_axis": [ -0.941, 0.161, 0.296 ], "y_axis": [ -0.192, -0.978, -0.080 ], "z_axis": [ 0.277, -0.132, 0.952 ], "quaternion": [ 0.090, 0.146, -0.054, 0.984 ] } }, { "index": 676, "index_chain": 676, "chain_name": "2", "nt_resnum": 823, "nt_name": "U", "nt_code": "U", "nt_id": "///2/823", "linked_nts": [ "///2/822", "///2/824" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,hairpin-loop,splayed-apart", "alpha": 61.806, "beta": 150.548, "gamma": 52.903, "delta": 81.249, "epsilon": -111.246, "zeta": -85.460, "epsilon_zeta": -25.787, "bb_type": "--", "chi": -7.860, "glyco_bond": "syn", "C5prime_xyz": [ -5.018, 4.030, -2.000 ], "P_xyz": [ -4.511, 1.499, -2.459 ], "form": ".", "ssZp": -4.733, "Dp": 4.753, "splay_angle": 51.275, "splay_distance": 7.770, "splay_ratio": 0.434, "d22": 4.574, "d64": 5.309, "eta": -46.645, "theta": -123.084, "eta_prime": 5.996, "theta_prime": -119.012, "eta_base": 68.831, "theta_base": -131.171, "v0": 3.590, "v1": -25.543, "v2": 36.590, "v3": -35.539, "v4": 20.156, "amplitude": 37.594, "phase_angle": 13.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "5d", "suiteness": 0.906, "filter_rmsd": 0.110, "frame": { "rmsd": 0.009, "origin": [ 226.976, 144.481, 190.195 ], "x_axis": [ -0.086, 0.713, 0.696 ], "y_axis": [ -0.878, -0.385, 0.285 ], "z_axis": [ 0.471, -0.587, 0.659 ], "quaternion": [ 0.545, 0.400, -0.103, 0.730 ] } }, { "index": 677, "index_chain": 677, "chain_name": "2", "nt_resnum": 824, "nt_name": "C", "nt_code": "C", "nt_id": "///2/824", "linked_nts": [ "///2/823", "///2/825" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -67.480, "beta": -171.977, "gamma": 51.024, "delta": 81.988, "epsilon": -137.359, "zeta": -67.440, "epsilon_zeta": -69.919, "bb_type": "BI", "chi": -166.786, "glyco_bond": "anti", "C5prime_xyz": [ -1.260, 8.676, 0.941 ], "P_xyz": [ 1.209, 8.980, 1.768 ], "form": ".", "ssZp": 4.543, "Dp": 4.682, "splay_angle": 25.711, "splay_distance": 4.016, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 169.866, "theta": -131.115, "eta_prime": -178.727, "theta_prime": -126.073, "eta_base": 171.180, "theta_base": -76.320, "v0": 2.777, "v1": -24.312, "v2": 35.413, "v3": -34.799, "v4": 20.193, "amplitude": 36.555, "phase_angle": 14.360, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.300, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 221.939, 150.395, 190.040 ], "x_axis": [ 0.913, -0.305, -0.270 ], "y_axis": [ -0.360, -0.915, -0.182 ], "z_axis": [ -0.192, 0.263, -0.946 ], "quaternion": [ -0.114, 0.971, -0.171, -0.119 ] } }, { "index": 678, "index_chain": 678, "chain_name": "2", "nt_resnum": 825, "nt_name": "A", "nt_code": "A", "nt_id": "///2/825", "linked_nts": [ "///2/824", "///2/826" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -62.649, "beta": 169.198, "gamma": 50.678, "delta": 82.316, "epsilon": -152.144, "zeta": -81.636, "epsilon_zeta": -70.508, "bb_type": "BI", "chi": -162.789, "glyco_bond": "anti", "C5prime_xyz": [ -1.287, 8.667, 0.722 ], "P_xyz": [ 1.301, 8.934, 1.050 ], "form": "A", "ssZp": 4.453, "Dp": 4.587, "splay_angle": 22.523, "splay_distance": 3.537, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 160.548, "theta": -152.880, "eta_prime": -177.114, "theta_prime": -152.905, "eta_base": -108.831, "theta_base": -138.690, "v0": 2.941, "v1": -24.157, "v2": 35.008, "v3": -34.303, "v4": 19.809, "amplitude": 36.091, "phase_angle": 14.076, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.916, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 223.819, 150.096, 186.504 ], "x_axis": [ 0.338, -0.934, -0.113 ], "y_axis": [ -0.941, -0.340, -0.008 ], "z_axis": [ -0.031, 0.109, -0.994 ], "quaternion": [ -0.036, 0.817, -0.573, -0.044 ] } }, { "index": 679, "index_chain": 679, "chain_name": "2", "nt_resnum": 826, "nt_name": "A", "nt_code": "A", "nt_id": "///2/826", "linked_nts": [ "///2/825", "///2/827" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,A-minor", "alpha": -54.806, "beta": 168.890, "gamma": 47.268, "delta": 80.191, "epsilon": -137.641, "zeta": -56.892, "epsilon_zeta": -80.748, "bb_type": "BI", "chi": -157.824, "glyco_bond": "anti", "C5prime_xyz": [ -1.289, 8.708, 0.397 ], "P_xyz": [ 1.304, 9.063, 0.533 ], "form": ".", "ssZp": 4.330, "Dp": 4.710, "splay_angle": 47.662, "splay_distance": 7.942, "splay_ratio": 0.409, "d22": null, "d64": null, "eta": 171.681, "theta": -88.034, "eta_prime": 179.808, "theta_prime": -89.869, "eta_base": -155.406, "theta_base": -65.286, "v0": 3.216, "v1": -25.355, "v2": 36.717, "v3": -35.881, "v4": 20.581, "amplitude": 37.819, "phase_angle": 13.864, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.818, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 225.119, 151.373, 183.472 ], "x_axis": [ -0.098, -0.991, -0.089 ], "y_axis": [ -0.993, 0.103, -0.050 ], "z_axis": [ 0.059, 0.084, -0.995 ], "quaternion": [ 0.050, -0.670, 0.741, 0.011 ] } }, { "index": 680, "index_chain": 680, "chain_name": "2", "nt_resnum": 827, "nt_name": "A", "nt_code": "A", "nt_id": "///2/827", "linked_nts": [ "///2/826", "///2/828" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": 139.070, "beta": -150.878, "gamma": -162.621, "delta": 80.900, "epsilon": -121.102, "zeta": -60.167, "epsilon_zeta": -60.935, "bb_type": "--", "chi": 169.935, "glyco_bond": "anti", "C5prime_xyz": [ -1.534, 8.060, 2.193 ], "P_xyz": [ -0.214, 10.262, 1.647 ], "form": ".", "ssZp": 4.801, "Dp": 4.801, "splay_angle": 35.518, "splay_distance": 5.480, "splay_ratio": 0.311, "d22": null, "d64": null, "eta": 172.242, "theta": -144.522, "eta_prime": -156.056, "theta_prime": -135.062, "eta_base": -95.599, "theta_base": -80.679, "v0": 5.365, "v1": -27.281, "v2": 37.719, "v3": -35.603, "v4": 19.064, "amplitude": 38.392, "phase_angle": 10.741, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.284, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 222.341, 145.352, 179.101 ], "x_axis": [ -0.901, -0.422, 0.099 ], "y_axis": [ -0.406, 0.902, 0.150 ], "z_axis": [ -0.152, 0.095, -0.984 ], "quaternion": [ -0.064, -0.213, 0.973, 0.063 ] } }, { "index": 681, "index_chain": 681, "chain_name": "2", "nt_resnum": 828, "nt_name": "G", "nt_code": "G", "nt_id": "///2/828", "linked_nts": [ "///2/827", "///2/829" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": -64.298, "beta": 171.281, "gamma": 56.958, "delta": 81.669, "epsilon": -148.695, "zeta": -80.990, "epsilon_zeta": -67.705, "bb_type": "BI", "chi": -171.631, "glyco_bond": "anti", "C5prime_xyz": [ -1.616, 8.688, 1.195 ], "P_xyz": [ 0.898, 9.151, 1.774 ], "form": "A", "ssZp": 4.503, "Dp": 4.547, "splay_angle": 25.031, "splay_distance": 3.884, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 160.525, "theta": -149.260, "eta_prime": -169.926, "theta_prime": -140.340, "eta_base": -94.176, "theta_base": -108.906, "v0": -0.407, "v1": -21.523, "v2": 33.952, "v3": -35.144, "v4": 22.440, "amplitude": 35.960, "phase_angle": 19.239, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.564, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 217.797, 144.461, 176.172 ], "x_axis": [ -0.767, 0.597, 0.238 ], "y_axis": [ 0.619, 0.785, 0.025 ], "z_axis": [ -0.172, 0.166, -0.971 ], "quaternion": [ -0.109, 0.324, 0.938, 0.051 ] } }, { "index": 682, "index_chain": 682, "chain_name": "2", "nt_resnum": 829, "nt_name": "C", "nt_code": "C", "nt_id": "///2/829", "linked_nts": [ "///2/828", "///2/830" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -50.799, "beta": 158.909, "gamma": 75.062, "delta": 149.623, "epsilon": -91.125, "zeta": 174.998, "epsilon_zeta": 93.877, "bb_type": "BII", "chi": -142.317, "glyco_bond": "anti", "C5prime_xyz": [ -1.880, 8.763, 0.018 ], "P_xyz": [ 0.674, 9.017, 0.581 ], "form": ".", "ssZp": 0.580, "Dp": 0.633, "splay_angle": 66.264, "splay_distance": 9.758, "splay_ratio": 0.560, "d22": null, "d64": null, "eta": -147.679, "theta": 162.596, "eta_prime": -117.684, "theta_prime": 139.336, "eta_base": -87.711, "theta_base": -178.034, "v0": -21.814, "v1": 36.973, "v2": -37.162, "v3": 25.523, "v4": -2.516, "amplitude": 38.482, "phase_angle": 164.952, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.460, "filter_rmsd": 0.061, "frame": { "rmsd": 0.002, "origin": [ 215.764, 144.807, 172.880 ], "x_axis": [ -0.260, 0.939, 0.225 ], "y_axis": [ 0.942, 0.297, -0.154 ], "z_axis": [ -0.211, 0.172, -0.962 ], "quaternion": [ -0.137, 0.593, 0.794, 0.006 ] } }, { "index": 683, "index_chain": 683, "chain_name": "2", "nt_resnum": 830, "nt_name": "A", "nt_code": "A", "nt_id": "///2/830", "linked_nts": [ "///2/829", "///2/831" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -100.618, "beta": 74.214, "gamma": 143.179, "delta": 80.481, "epsilon": -156.153, "zeta": -53.712, "epsilon_zeta": -102.441, "bb_type": "BI", "chi": 24.781, "glyco_bond": "syn", "C5prime_xyz": [ -5.485, 3.465, -0.201 ], "P_xyz": [ -6.091, 3.570, 2.355 ], "form": ".", "ssZp": -4.250, "Dp": 4.520, "splay_angle": 33.230, "splay_distance": 5.040, "splay_ratio": 0.291, "d22": null, "d64": null, "eta": -134.183, "theta": -141.802, "eta_prime": -150.195, "theta_prime": -125.466, "eta_base": -101.799, "theta_base": -127.792, "v0": 0.251, "v1": -22.507, "v2": 34.894, "v3": -35.735, "v4": 22.371, "amplitude": 36.736, "phase_angle": 18.219, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 219.332, 136.157, 170.110 ], "x_axis": [ -0.948, -0.190, 0.254 ], "y_axis": [ 0.063, 0.671, 0.739 ], "z_axis": [ -0.311, 0.717, -0.624 ], "quaternion": [ -0.157, -0.035, 0.901, 0.404 ] } }, { "index": 684, "index_chain": 684, "chain_name": "2", "nt_resnum": 831, "nt_name": "G", "nt_code": "G", "nt_id": "///2/831", "linked_nts": [ "///2/830", "///2/832" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 165.763, "beta": -128.703, "gamma": 157.723, "delta": 84.505, "epsilon": -143.472, "zeta": -78.236, "epsilon_zeta": -65.236, "bb_type": "BI", "chi": -167.987, "glyco_bond": "anti", "C5prime_xyz": [ -1.277, 8.676, 1.048 ], "P_xyz": [ 0.886, 9.104, -0.375 ], "form": ".", "ssZp": 4.450, "Dp": 4.552, "splay_angle": 28.645, "splay_distance": 4.475, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 167.124, "theta": -147.942, "eta_prime": -144.977, "theta_prime": -152.260, "eta_base": -113.221, "theta_base": -130.450, "v0": 1.625, "v1": -21.769, "v2": 32.458, "v3": -32.467, "v4": 19.479, "amplitude": 33.758, "phase_angle": 15.951, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.153, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 221.014, 131.406, 170.131 ], "x_axis": [ 0.872, -0.052, -0.486 ], "y_axis": [ 0.403, 0.641, 0.654 ], "z_axis": [ 0.277, -0.766, 0.580 ], "quaternion": [ 0.879, 0.404, 0.217, -0.129 ] } }, { "index": 685, "index_chain": 685, "chain_name": "2", "nt_resnum": 832, "nt_name": "G", "nt_code": "G", "nt_id": "///2/832", "linked_nts": [ "///2/831", "///2/833" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.088, "beta": -175.030, "gamma": 52.140, "delta": 84.547, "epsilon": 170.867, "zeta": -86.067, "epsilon_zeta": -103.065, "bb_type": "BI", "chi": -135.595, "glyco_bond": "anti", "C5prime_xyz": [ -1.166, 8.608, -0.880 ], "P_xyz": [ 1.443, 8.853, -1.034 ], "form": "A", "ssZp": 3.622, "Dp": 4.236, "splay_angle": 18.794, "splay_distance": 3.072, "splay_ratio": 0.163, "d22": null, "d64": null, "eta": 175.087, "theta": -148.992, "eta_prime": -168.560, "theta_prime": -159.691, "eta_base": -134.173, "theta_base": -157.133, "v0": 5.225, "v1": -25.124, "v2": 34.400, "v3": -32.318, "v4": 17.145, "amplitude": 34.956, "phase_angle": 10.234, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.891, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 222.270, 127.417, 171.724 ], "x_axis": [ 0.964, 0.263, 0.032 ], "y_axis": [ -0.154, 0.457, 0.876 ], "z_axis": [ 0.216, -0.850, 0.481 ], "quaternion": [ 0.852, 0.507, 0.054, 0.122 ] } }, { "index": 686, "index_chain": 686, "chain_name": "2", "nt_resnum": 833, "nt_name": "C", "nt_code": "C", "nt_id": "///2/833", "linked_nts": [ "///2/832", "///2/834" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": 161.116, "beta": -140.922, "gamma": 158.897, "delta": 81.588, "epsilon": -115.580, "zeta": -99.672, "epsilon_zeta": -15.908, "bb_type": "--", "chi": -157.573, "glyco_bond": "anti", "C5prime_xyz": [ -1.229, 8.750, 0.389 ], "P_xyz": [ 0.551, 9.321, -1.451 ], "form": ".", "ssZp": 4.152, "Dp": 4.754, "splay_angle": 41.487, "splay_distance": 7.127, "splay_ratio": 0.358, "d22": 4.248, "d64": 4.777, "eta": 167.690, "theta": -113.002, "eta_prime": 176.542, "theta_prime": -122.191, "eta_base": -166.193, "theta_base": -106.057, "v0": 3.507, "v1": -25.092, "v2": 35.976, "v3": -34.941, "v4": 19.836, "amplitude": 36.968, "phase_angle": 13.302, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.197, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 222.148, 124.371, 172.102 ], "x_axis": [ 0.924, 0.228, 0.309 ], "y_axis": [ -0.348, 0.158, 0.924 ], "z_axis": [ 0.162, -0.961, 0.226 ], "quaternion": [ 0.760, 0.620, -0.048, 0.189 ] } }, { "index": 687, "index_chain": 687, "chain_name": "2", "nt_resnum": 834, "nt_name": "C", "nt_code": "C", "nt_id": "///2/834", "linked_nts": [ "///2/833", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": 59.392, "beta": 134.997, "gamma": -59.297, "delta": 81.653, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -156.515, "glyco_bond": "anti", "C5prime_xyz": [ -1.275, 8.773, 0.315 ], "P_xyz": [ -0.116, 10.309, 2.102 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 2.621, "v1": -24.490, "v2": 35.852, "v3": -35.329, "v4": 20.622, "amplitude": 37.056, "phase_angle": 14.648, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.001, "origin": [ 227.363, 120.607, 175.174 ], "x_axis": [ 0.065, 0.998, -0.011 ], "y_axis": [ -0.965, 0.066, 0.255 ], "z_axis": [ 0.255, -0.006, 0.967 ], "quaternion": [ 0.724, 0.090, 0.092, 0.677 ] } }, { "index": 688, "index_chain": 688, "chain_name": "2", "nt_resnum": 841, "nt_name": "G", "nt_code": "G", "nt_id": "///2/841", "linked_nts": [ null, "///2/842" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate", "alpha": null, "beta": 131.593, "gamma": 172.227, "delta": 81.916, "epsilon": -136.944, "zeta": -76.075, "epsilon_zeta": -60.869, "bb_type": "BI", "chi": -177.951, "glyco_bond": "anti", "C5prime_xyz": [ -1.621, 8.541, 1.549 ], "P_xyz": [ -1.280, 10.986, 0.663 ], "form": "A", "ssZp": 4.600, "Dp": 4.629, "splay_angle": 25.100, "splay_distance": 3.925, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": null, "theta": 172.082, "eta_prime": null, "theta_prime": -171.768, "eta_base": null, "theta_base": -125.414, "v0": 0.719, "v1": -22.456, "v2": 34.372, "v3": -34.944, "v4": 21.590, "amplitude": 36.041, "phase_angle": 17.503, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 223.792, 123.339, 173.262 ], "x_axis": [ 0.575, 0.697, 0.429 ], "y_axis": [ 0.736, -0.210, -0.644 ], "z_axis": [ -0.358, 0.686, -0.633 ], "quaternion": [ -0.428, 0.778, 0.460, 0.023 ] } }, { "index": 689, "index_chain": 689, "chain_name": "2", "nt_resnum": 842, "nt_name": "C", "nt_code": "C", "nt_id": "///2/842", "linked_nts": [ "///2/841", "///2/843" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.238, "beta": 172.341, "gamma": 55.593, "delta": 83.109, "epsilon": -153.390, "zeta": -73.631, "epsilon_zeta": -79.758, "bb_type": "BI", "chi": -159.452, "glyco_bond": "anti", "C5prime_xyz": [ -1.276, 8.762, 0.523 ], "P_xyz": [ 1.323, 9.072, 0.722 ], "form": "A", "ssZp": 4.364, "Dp": 4.551, "splay_angle": 26.934, "splay_distance": 4.266, "splay_ratio": 0.233, "d22": 5.065, "d64": 5.040, "eta": 166.592, "theta": -147.075, "eta_prime": -176.216, "theta_prime": -145.548, "eta_base": -123.858, "theta_base": -123.170, "v0": 2.182, "v1": -23.279, "v2": 34.332, "v3": -34.028, "v4": 20.110, "amplitude": 35.574, "phase_angle": 15.184, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.911, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 222.674, 126.993, 172.366 ], "x_axis": [ 0.927, 0.354, -0.126 ], "y_axis": [ 0.121, -0.600, -0.791 ], "z_axis": [ -0.355, 0.718, -0.599 ], "quaternion": [ -0.427, 0.884, 0.134, -0.136 ] } }, { "index": 690, "index_chain": 690, "chain_name": "2", "nt_resnum": 843, "nt_name": "C", "nt_code": "C", "nt_id": "///2/843", "linked_nts": [ "///2/842", "///2/844" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -64.159, "beta": 179.575, "gamma": 55.647, "delta": 81.525, "epsilon": -139.489, "zeta": -25.526, "epsilon_zeta": -113.963, "bb_type": "--", "chi": -147.422, "glyco_bond": "anti", "C5prime_xyz": [ -1.220, 8.788, -0.218 ], "P_xyz": [ 1.381, 9.139, -0.323 ], "form": ".", "ssZp": 3.943, "Dp": 4.668, "splay_angle": 25.340, "splay_distance": 4.737, "splay_ratio": 0.233, "d22": 4.958, "d64": 6.413, "eta": 177.425, "theta": -118.262, "eta_prime": -172.286, "theta_prime": -134.647, "eta_base": -141.248, "theta_base": -152.042, "v0": 2.492, "v1": -24.231, "v2": 35.585, "v3": -35.107, "v4": 20.561, "amplitude": 36.807, "phase_angle": 14.804, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.963, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 221.600, 130.819, 170.814 ], "x_axis": [ 0.849, -0.002, -0.529 ], "y_axis": [ -0.405, -0.646, -0.647 ], "z_axis": [ -0.340, 0.763, -0.550 ], "quaternion": [ -0.404, 0.872, -0.117, -0.249 ] } }, { "index": 691, "index_chain": 691, "chain_name": "2", "nt_resnum": 844, "nt_name": "U", "nt_code": "U", "nt_id": "///2/844", "linked_nts": [ "///2/843", "///2/845" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -126.541, "beta": 90.801, "gamma": 176.553, "delta": 80.216, "epsilon": -125.380, "zeta": -76.127, "epsilon_zeta": -49.253, "bb_type": "--", "chi": -166.307, "glyco_bond": "anti", "C5prime_xyz": [ -1.565, 8.706, 0.887 ], "P_xyz": [ -2.418, 10.703, -0.585 ], "form": "A", "ssZp": 4.483, "Dp": 4.699, "splay_angle": 27.980, "splay_distance": 4.460, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": -171.947, "theta": 164.821, "eta_prime": -173.225, "theta_prime": -175.165, "eta_base": -178.786, "theta_base": -126.747, "v0": 0.401, "v1": -22.962, "v2": 35.512, "v3": -36.279, "v4": 22.615, "amplitude": 37.341, "phase_angle": 18.009, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 220.867, 135.497, 170.686 ], "x_axis": [ 0.882, 0.046, -0.469 ], "y_axis": [ -0.351, -0.599, -0.719 ], "z_axis": [ -0.314, 0.799, -0.512 ], "quaternion": [ -0.439, 0.865, -0.088, -0.226 ] } }, { "index": 692, "index_chain": 692, "chain_name": "2", "nt_resnum": 845, "nt_name": "G", "nt_code": "G", "nt_id": "///2/845", "linked_nts": [ "///2/844", "///2/846" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -69.957, "beta": 173.735, "gamma": 51.072, "delta": 83.037, "epsilon": -149.727, "zeta": -74.615, "epsilon_zeta": -75.112, "bb_type": "BI", "chi": -165.078, "glyco_bond": "anti", "C5prime_xyz": [ -1.511, 8.736, 0.855 ], "P_xyz": [ 0.999, 9.159, 1.487 ], "form": "A", "ssZp": 4.402, "Dp": 4.521, "splay_angle": 18.684, "splay_distance": 2.981, "splay_ratio": 0.163, "d22": null, "d64": null, "eta": 156.381, "theta": -145.680, "eta_prime": 174.493, "theta_prime": -144.970, "eta_base": -130.403, "theta_base": -115.682, "v0": 0.716, "v1": -21.899, "v2": 33.537, "v3": -34.106, "v4": 21.044, "amplitude": 35.163, "phase_angle": 17.496, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.686, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 222.237, 138.363, 167.556 ], "x_axis": [ 0.423, -0.802, -0.422 ], "y_axis": [ -0.905, -0.401, -0.144 ], "z_axis": [ -0.053, 0.443, -0.895 ], "quaternion": [ -0.178, 0.825, -0.517, -0.144 ] } }, { "index": 693, "index_chain": 693, "chain_name": "2", "nt_resnum": 846, "nt_name": "G", "nt_code": "G", "nt_id": "///2/846", "linked_nts": [ "///2/845", "///2/847" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -66.767, "beta": 171.789, "gamma": 53.297, "delta": 82.686, "epsilon": -119.126, "zeta": 81.408, "epsilon_zeta": 159.466, "bb_type": "--", "chi": -154.725, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.801, 0.211 ], "P_xyz": [ 1.263, 9.198, 0.265 ], "form": ".", "ssZp": 4.033, "Dp": 4.691, "splay_angle": 121.755, "splay_distance": 18.071, "splay_ratio": 0.874, "d22": null, "d64": null, "eta": 172.123, "theta": 55.042, "eta_prime": -177.853, "theta_prime": 44.640, "eta_base": -138.697, "theta_base": 48.117, "v0": 1.085, "v1": -22.425, "v2": 34.027, "v3": -34.325, "v4": 21.015, "amplitude": 35.564, "phase_angle": 16.906, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.980, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 223.383, 139.508, 165.054 ], "x_axis": [ -0.171, -0.895, -0.413 ], "y_axis": [ -0.980, 0.198, -0.023 ], "z_axis": [ 0.102, 0.401, -0.910 ], "quaternion": [ 0.171, -0.621, 0.755, 0.125 ] } }, { "index": 694, "index_chain": 694, "chain_name": "2", "nt_resnum": 847, "nt_name": "A", "nt_code": "A", "nt_id": "///2/847", "linked_nts": [ "///2/846", "///2/848" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": 63.221, "beta": 175.677, "gamma": -123.063, "delta": 84.381, "epsilon": -159.236, "zeta": -63.781, "epsilon_zeta": -95.455, "bb_type": "BI", "chi": -147.010, "glyco_bond": "anti", "C5prime_xyz": [ -1.095, 8.638, -0.200 ], "P_xyz": [ -0.550, 11.092, -0.923 ], "form": ".", "ssZp": 4.047, "Dp": 4.549, "splay_angle": 40.956, "splay_distance": 6.544, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 168.423, "theta": -149.134, "eta_prime": 179.188, "theta_prime": -132.851, "eta_base": -155.862, "theta_base": -83.293, "v0": 5.528, "v1": -25.709, "v2": 35.024, "v3": -32.788, "v4": 17.230, "amplitude": 35.552, "phase_angle": 9.884, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 207.109, 146.526, 168.585 ], "x_axis": [ 0.395, 0.808, 0.437 ], "y_axis": [ 0.790, -0.056, -0.610 ], "z_axis": [ -0.468, 0.587, -0.661 ], "quaternion": [ -0.412, 0.727, 0.550, -0.011 ] } }, { "index": 695, "index_chain": 695, "chain_name": "2", "nt_resnum": 848, "nt_name": "U", "nt_code": "U", "nt_id": "///2/848", "linked_nts": [ "///2/847", "///2/849" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": 148.382, "beta": -131.688, "gamma": 171.563, "delta": 81.793, "epsilon": -118.015, "zeta": -80.728, "epsilon_zeta": -37.287, "bb_type": "--", "chi": -168.332, "glyco_bond": "anti", "C5prime_xyz": [ -1.219, 8.586, 1.044 ], "P_xyz": [ 0.539, 9.485, -0.677 ], "form": "A", "ssZp": 4.512, "Dp": 4.747, "splay_angle": 24.403, "splay_distance": 3.936, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 170.033, "theta": -142.399, "eta_prime": -152.929, "theta_prime": -144.924, "eta_base": -86.065, "theta_base": -114.662, "v0": 3.956, "v1": -25.257, "v2": 35.854, "v3": -34.568, "v4": 19.293, "amplitude": 36.738, "phase_angle": 12.591, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.491, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 209.916, 152.341, 167.524 ], "x_axis": [ 0.842, 0.417, -0.344 ], "y_axis": [ -0.033, -0.595, -0.803 ], "z_axis": [ -0.539, 0.687, -0.487 ], "quaternion": [ -0.436, 0.855, 0.112, -0.258 ] } }, { "index": 696, "index_chain": 696, "chain_name": "2", "nt_resnum": 849, "nt_name": "A", "nt_code": "A", "nt_id": "///2/849", "linked_nts": [ "///2/848", "///2/850" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -60.064, "beta": 169.051, "gamma": 41.721, "delta": 80.245, "epsilon": -145.781, "zeta": -71.897, "epsilon_zeta": -73.884, "bb_type": "BI", "chi": -163.934, "glyco_bond": "anti", "C5prime_xyz": [ -1.573, 8.743, 0.752 ], "P_xyz": [ 0.900, 9.321, 1.384 ], "form": "A", "ssZp": 4.458, "Dp": 4.600, "splay_angle": 24.443, "splay_distance": 3.841, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 153.247, "theta": -142.257, "eta_prime": 170.187, "theta_prime": -138.301, "eta_base": -142.096, "theta_base": -93.670, "v0": -0.061, "v1": -22.453, "v2": 35.152, "v3": -36.175, "v4": 22.855, "amplitude": 37.113, "phase_angle": 18.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.421, "filter_rmsd": 0.040, "frame": { "rmsd": 0.004, "origin": [ 210.030, 155.832, 165.709 ], "x_axis": [ 0.789, -0.470, -0.396 ], "y_axis": [ -0.611, -0.674, -0.417 ], "z_axis": [ -0.071, 0.571, -0.818 ], "quaternion": [ -0.273, 0.906, -0.298, -0.129 ] } }, { "index": 697, "index_chain": 697, "chain_name": "2", "nt_resnum": 850, "nt_name": "C", "nt_code": "C", "nt_id": "///2/850", "linked_nts": [ "///2/849", "///2/851" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -58.937, "beta": 164.479, "gamma": 54.908, "delta": 81.307, "epsilon": -120.994, "zeta": -82.341, "epsilon_zeta": -38.653, "bb_type": "--", "chi": -160.817, "glyco_bond": "anti", "C5prime_xyz": [ -1.299, 8.767, 0.580 ], "P_xyz": [ 1.306, 9.060, 0.579 ], "form": ".", "ssZp": 4.298, "Dp": 4.718, "splay_angle": 26.953, "splay_distance": 4.320, "splay_ratio": 0.233, "d22": 3.729, "d64": 3.435, "eta": 173.636, "theta": -129.572, "eta_prime": -170.723, "theta_prime": -126.210, "eta_base": -113.967, "theta_base": -86.335, "v0": 1.999, "v1": -23.838, "v2": 35.427, "v3": -35.254, "v4": 20.976, "amplitude": 36.777, "phase_angle": 15.576, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.934, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 211.661, 156.889, 162.396 ], "x_axis": [ 0.148, -0.815, -0.560 ], "y_axis": [ -0.989, -0.117, -0.091 ], "z_axis": [ 0.008, 0.567, -0.823 ], "quaternion": [ -0.228, 0.723, -0.624, -0.191 ] } }, { "index": 698, "index_chain": 698, "chain_name": "2", "nt_resnum": 851, "nt_name": "C", "nt_code": "C", "nt_id": "///2/851", "linked_nts": [ "///2/850", "///2/852" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": -55.330, "beta": 157.812, "gamma": 52.240, "delta": 81.327, "epsilon": -127.475, "zeta": 134.492, "epsilon_zeta": 98.032, "bb_type": "--", "chi": -158.177, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.821, 0.403 ], "P_xyz": [ 1.181, 9.155, 0.294 ], "form": ".", "ssZp": 4.238, "Dp": 4.674, "splay_angle": 98.472, "splay_distance": 11.587, "splay_ratio": 0.775, "d22": null, "d64": null, "eta": 164.857, "theta": 77.213, "eta_prime": -176.664, "theta_prime": 85.956, "eta_base": -122.579, "theta_base": 140.827, "v0": 0.159, "v1": -22.173, "v2": 34.487, "v3": -35.371, "v4": 22.219, "amplitude": 36.340, "phase_angle": 18.376, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.518, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 211.690, 156.321, 158.113 ], "x_axis": [ -0.577, -0.807, -0.123 ], "y_axis": [ -0.811, 0.549, 0.204 ], "z_axis": [ -0.097, 0.218, -0.971 ], "quaternion": [ 0.008, -0.460, 0.880, 0.120 ] } }, { "index": 699, "index_chain": 699, "chain_name": "2", "nt_resnum": 852, "nt_name": "G", "nt_code": "G", "nt_id": "///2/852", "linked_nts": [ "///2/851", "///2/853" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": -75.446, "beta": 144.303, "gamma": 69.723, "delta": 79.281, "epsilon": -123.563, "zeta": -55.692, "epsilon_zeta": -67.871, "bb_type": "--", "chi": -17.931, "glyco_bond": "syn", "C5prime_xyz": [ -4.833, 4.318, -2.418 ], "P_xyz": [ -4.620, 1.717, -2.649 ], "form": ".", "ssZp": -4.625, "Dp": 4.749, "splay_angle": 19.636, "splay_distance": 3.730, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": -159.442, "theta": -108.100, "eta_prime": -150.663, "theta_prime": -110.437, "eta_base": 179.626, "theta_base": -64.568, "v0": 1.378, "v1": -24.402, "v2": 36.890, "v3": -37.097, "v4": 22.523, "amplitude": 38.494, "phase_angle": 16.596, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "9a", "suiteness": 0.280, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 210.369, 167.606, 155.837 ], "x_axis": [ 0.330, 0.833, -0.444 ], "y_axis": [ -0.866, 0.454, 0.208 ], "z_axis": [ 0.375, 0.316, 0.872 ], "quaternion": [ 0.815, -0.033, 0.251, 0.522 ] } }, { "index": 700, "index_chain": 700, "chain_name": "2", "nt_resnum": 853, "nt_name": "C", "nt_code": "C", "nt_id": "///2/853", "linked_nts": [ "///2/852", "///2/854" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -65.217, "beta": 179.018, "gamma": 45.760, "delta": 78.599, "epsilon": -138.709, "zeta": -61.916, "epsilon_zeta": -76.792, "bb_type": "BI", "chi": 17.151, "glyco_bond": "syn", "C5prime_xyz": [ -5.603, 4.015, -0.677 ], "P_xyz": [ -5.873, 1.486, -1.328 ], "form": ".", "ssZp": -4.455, "Dp": 4.632, "splay_angle": 34.135, "splay_distance": 5.215, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 155.646, "theta": -131.064, "eta_prime": -178.086, "theta_prime": -125.094, "eta_base": -109.937, "theta_base": -141.238, "v0": -0.952, "v1": -22.290, "v2": 35.723, "v3": -37.249, "v4": 24.075, "amplitude": 38.012, "phase_angle": 19.986, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.555, "filter_rmsd": 0.070, "frame": { "rmsd": 0.009, "origin": [ 207.642, 166.171, 153.735 ], "x_axis": [ 0.915, 0.036, -0.402 ], "y_axis": [ -0.150, 0.955, -0.256 ], "z_axis": [ 0.375, 0.294, 0.879 ], "quaternion": [ 0.968, -0.142, 0.201, 0.048 ] } }, { "index": 701, "index_chain": 701, "chain_name": "2", "nt_resnum": 854, "nt_name": "A", "nt_code": "A", "nt_id": "///2/854", "linked_nts": [ "///2/853", "///2/855" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor", "alpha": -66.942, "beta": 174.080, "gamma": 54.603, "delta": 79.673, "epsilon": -139.271, "zeta": -67.276, "epsilon_zeta": -71.995, "bb_type": "BI", "chi": -175.549, "glyco_bond": "anti", "C5prime_xyz": [ -1.547, 8.513, 1.411 ], "P_xyz": [ 0.970, 8.916, 2.018 ], "form": ".", "ssZp": 4.690, "Dp": 4.705, "splay_angle": 36.384, "splay_distance": 5.635, "splay_ratio": 0.315, "d22": null, "d64": null, "eta": 164.273, "theta": -133.776, "eta_prime": -173.944, "theta_prime": -130.283, "eta_base": -174.597, "theta_base": -99.469, "v0": 2.308, "v1": -24.987, "v2": 36.937, "v3": -36.580, "v4": 21.620, "amplitude": 38.277, "phase_angle": 15.209, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.893, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 208.882, 165.283, 148.749 ], "x_axis": [ -0.346, -0.577, 0.740 ], "y_axis": [ -0.686, 0.694, 0.220 ], "z_axis": [ -0.640, -0.431, -0.635 ], "quaternion": [ -0.422, -0.386, 0.818, -0.065 ] } }, { "index": 702, "index_chain": 702, "chain_name": "2", "nt_resnum": 855, "nt_name": "G", "nt_code": "G", "nt_id": "///2/855", "linked_nts": [ "///2/854", "///2/856" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -59.829, "beta": -179.446, "gamma": 50.739, "delta": 78.557, "epsilon": -134.057, "zeta": -81.354, "epsilon_zeta": -52.703, "bb_type": "BI", "chi": 178.305, "glyco_bond": "anti", "C5prime_xyz": [ -1.761, 8.465, 1.731 ], "P_xyz": [ 0.580, 8.886, 2.828 ], "form": "A", "ssZp": 4.711, "Dp": 4.711, "splay_angle": 28.084, "splay_distance": 4.447, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 173.905, "theta": -145.063, "eta_prime": -170.972, "theta_prime": -139.058, "eta_base": -123.815, "theta_base": -109.911, "v0": 0.920, "v1": -24.064, "v2": 36.779, "v3": -37.275, "v4": 22.895, "amplitude": 38.515, "phase_angle": 17.267, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.916, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 205.626, 160.997, 147.084 ], "x_axis": [ -0.523, 0.115, 0.845 ], "y_axis": [ -0.030, 0.988, -0.153 ], "z_axis": [ -0.852, -0.105, -0.513 ], "quaternion": [ -0.488, 0.024, 0.869, -0.074 ] } }, { "index": 703, "index_chain": 703, "chain_name": "2", "nt_resnum": 856, "nt_name": "C", "nt_code": "C", "nt_id": "///2/856", "linked_nts": [ "///2/855", "///2/857" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -58.960, "beta": 172.708, "gamma": 53.621, "delta": 78.963, "epsilon": -147.113, "zeta": -65.836, "epsilon_zeta": -81.277, "bb_type": "BI", "chi": -166.067, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.757, 0.862 ], "P_xyz": [ 1.032, 9.307, 1.178 ], "form": "A", "ssZp": 4.559, "Dp": 4.651, "splay_angle": 25.873, "splay_distance": 4.159, "splay_ratio": 0.227, "d22": 4.155, "d64": 4.290, "eta": 170.810, "theta": -139.435, "eta_prime": -176.962, "theta_prime": -137.309, "eta_base": -137.280, "theta_base": -105.641, "v0": 1.063, "v1": -24.239, "v2": 36.886, "v3": -37.279, "v4": 22.817, "amplitude": 38.579, "phase_angle": 17.040, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.821, "filter_rmsd": 0.061, "frame": { "rmsd": 0.003, "origin": [ 201.865, 158.728, 146.390 ], "x_axis": [ -0.413, 0.681, 0.605 ], "y_axis": [ 0.307, 0.729, -0.611 ], "z_axis": [ -0.858, -0.066, -0.510 ], "quaternion": [ -0.449, 0.303, 0.814, -0.208 ] } }, { "index": 704, "index_chain": 704, "chain_name": "2", "nt_resnum": 857, "nt_name": "U", "nt_code": "U", "nt_id": "///2/857", "linked_nts": [ "///2/856", "///2/858" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -67.602, "beta": -178.258, "gamma": 52.889, "delta": 79.478, "epsilon": -148.619, "zeta": -86.553, "epsilon_zeta": -62.066, "bb_type": "BI", "chi": -159.445, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.775, 0.472 ], "P_xyz": [ 0.977, 9.431, 0.837 ], "form": "A", "ssZp": 4.401, "Dp": 4.624, "splay_angle": 21.288, "splay_distance": 3.361, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 168.430, "theta": -159.508, "eta_prime": -176.841, "theta_prime": -156.154, "eta_base": -130.833, "theta_base": -138.707, "v0": 0.613, "v1": -23.381, "v2": 35.965, "v3": -36.617, "v4": 22.691, "amplitude": 37.751, "phase_angle": 17.694, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.946, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 197.719, 159.008, 146.553 ], "x_axis": [ 0.027, 0.984, 0.179 ], "y_axis": [ 0.454, 0.147, -0.879 ], "z_axis": [ -0.890, 0.105, -0.443 ], "quaternion": [ -0.428, 0.575, 0.625, -0.309 ] } }, { "index": 705, "index_chain": 705, "chain_name": "2", "nt_resnum": 858, "nt_name": "A", "nt_code": "A", "nt_id": "///2/858", "linked_nts": [ "///2/857", "///2/859" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -56.252, "beta": 162.124, "gamma": 57.446, "delta": 80.631, "epsilon": -158.716, "zeta": -85.154, "epsilon_zeta": -73.562, "bb_type": "BI", "chi": -147.116, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.759, -0.263 ], "P_xyz": [ 1.087, 9.092, -0.860 ], "form": ".", "ssZp": 4.051, "Dp": 4.560, "splay_angle": 31.329, "splay_distance": 5.271, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": 171.371, "theta": -139.229, "eta_prime": -177.218, "theta_prime": -156.149, "eta_base": -151.362, "theta_base": -155.773, "v0": 1.562, "v1": -23.830, "v2": 35.807, "v3": -35.915, "v4": 21.663, "amplitude": 37.303, "phase_angle": 16.281, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.763, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 194.360, 159.028, 146.422 ], "x_axis": [ 0.144, 0.965, -0.220 ], "y_axis": [ 0.184, -0.244, -0.952 ], "z_axis": [ -0.972, 0.097, -0.213 ], "quaternion": [ -0.414, 0.633, 0.454, -0.471 ] } }, { "index": 706, "index_chain": 706, "chain_name": "2", "nt_resnum": 859, "nt_name": "G", "nt_code": "G", "nt_id": "///2/859", "linked_nts": [ "///2/858", "///2/860" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,bulge", "alpha": 165.172, "beta": -179.593, "gamma": 162.407, "delta": 82.783, "epsilon": -133.210, "zeta": -66.788, "epsilon_zeta": -66.421, "bb_type": "BI", "chi": 155.820, "glyco_bond": "anti", "C5prime_xyz": [ -2.003, 7.771, 2.749 ], "P_xyz": [ -0.154, 9.581, 3.144 ], "form": "A", "ssZp": 4.140, "Dp": 4.613, "splay_angle": 21.273, "splay_distance": 3.329, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 151.127, "theta": -146.301, "eta_prime": 155.597, "theta_prime": -140.593, "eta_base": 172.537, "theta_base": -101.024, "v0": 1.240, "v1": -22.380, "v2": 33.767, "v3": -34.031, "v4": 20.673, "amplitude": 35.245, "phase_angle": 16.652, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.438, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 189.221, 159.202, 147.583 ], "x_axis": [ 0.900, 0.432, 0.053 ], "y_axis": [ 0.342, -0.627, -0.700 ], "z_axis": [ -0.269, 0.648, -0.713 ], "quaternion": [ -0.374, 0.900, 0.215, -0.060 ] } }, { "index": 707, "index_chain": 707, "chain_name": "2", "nt_resnum": 860, "nt_name": "G", "nt_code": "G", "nt_id": "///2/860", "linked_nts": [ "///2/859", "///2/861" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,phosphate", "alpha": -96.718, "beta": -151.445, "gamma": 53.976, "delta": 87.479, "epsilon": -148.909, "zeta": -92.319, "epsilon_zeta": -56.590, "bb_type": "BI", "chi": -146.542, "glyco_bond": "anti", "C5prime_xyz": [ -1.101, 8.724, -0.157 ], "P_xyz": [ 1.346, 9.019, 0.754 ], "form": ".", "ssZp": 3.893, "Dp": 4.485, "splay_angle": 17.919, "splay_distance": 3.026, "splay_ratio": 0.169, "d22": null, "d64": null, "eta": 157.039, "theta": -153.857, "eta_prime": 173.301, "theta_prime": -141.822, "eta_base": -138.050, "theta_base": -105.342, "v0": 3.820, "v1": -22.487, "v2": 31.576, "v3": -30.267, "v4": 16.747, "amplitude": 32.284, "phase_angle": 12.029, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.359, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 188.975, 162.416, 146.749 ], "x_axis": [ 0.845, -0.277, -0.457 ], "y_axis": [ -0.511, -0.672, -0.536 ], "z_axis": [ -0.158, 0.687, -0.710 ], "quaternion": [ -0.340, 0.898, -0.219, -0.171 ] } }, { "index": 708, "index_chain": 708, "chain_name": "2", "nt_resnum": 861, "nt_name": "A", "nt_code": "A", "nt_id": "///2/861", "linked_nts": [ "///2/860", "///2/862" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor", "alpha": -43.895, "beta": 149.681, "gamma": 66.524, "delta": 149.480, "epsilon": -91.100, "zeta": 158.033, "epsilon_zeta": 110.867, "bb_type": "BII", "chi": -117.045, "glyco_bond": "anti", "C5prime_xyz": [ -1.622, 8.389, -1.294 ], "P_xyz": [ 0.999, 8.183, -1.310 ], "form": ".", "ssZp": 0.532, "Dp": 0.840, "splay_angle": 46.230, "splay_distance": 7.634, "splay_ratio": 0.398, "d22": null, "d64": null, "eta": -156.521, "theta": 155.261, "eta_prime": -125.205, "theta_prime": 135.194, "eta_base": -95.224, "theta_base": 149.196, "v0": -16.326, "v1": 32.152, "v2": -34.858, "v3": 26.326, "v4": -6.487, "amplitude": 35.228, "phase_angle": 171.692, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.418, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 188.632, 163.807, 144.083 ], "x_axis": [ 0.465, -0.631, -0.622 ], "y_axis": [ -0.877, -0.229, -0.423 ], "z_axis": [ 0.125, 0.742, -0.659 ], "quaternion": [ -0.380, 0.767, -0.491, -0.162 ] } }, { "index": 709, "index_chain": 709, "chain_name": "2", "nt_resnum": 862, "nt_name": "A", "nt_code": "A", "nt_id": "///2/862", "linked_nts": [ "///2/861", "///2/863" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,phosphate", "alpha": -166.608, "beta": 169.384, "gamma": 67.447, "delta": 84.024, "epsilon": -140.892, "zeta": -63.069, "epsilon_zeta": -77.823, "bb_type": "BI", "chi": -169.163, "glyco_bond": "anti", "C5prime_xyz": [ -1.283, 8.536, 1.097 ], "P_xyz": [ 1.334, 8.739, 1.091 ], "form": ".", "ssZp": 4.585, "Dp": 4.670, "splay_angle": 28.610, "splay_distance": 4.464, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 142.948, "theta": -125.847, "eta_prime": 131.009, "theta_prime": -125.437, "eta_base": 150.168, "theta_base": -85.590, "v0": 4.511, "v1": -25.231, "v2": 35.196, "v3": -33.571, "v4": 18.358, "amplitude": 35.927, "phase_angle": 11.575, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.432, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 184.953, 167.556, 149.622 ], "x_axis": [ 0.580, -0.302, -0.756 ], "y_axis": [ -0.813, -0.265, -0.518 ], "z_axis": [ -0.044, 0.916, -0.400 ], "quaternion": [ -0.478, 0.749, -0.372, -0.267 ] } }, { "index": 710, "index_chain": 710, "chain_name": "2", "nt_resnum": 863, "nt_name": "U", "nt_code": "U", "nt_id": "///2/863", "linked_nts": [ "///2/862", "///2/864" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -65.166, "beta": 170.829, "gamma": 56.961, "delta": 80.812, "epsilon": -112.724, "zeta": -85.471, "epsilon_zeta": -27.254, "bb_type": "--", "chi": -160.922, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.716, 0.585 ], "P_xyz": [ 1.225, 9.102, 0.630 ], "form": "A", "ssZp": 4.236, "Dp": 4.744, "splay_angle": 22.790, "splay_distance": 3.711, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 174.061, "theta": -128.435, "eta_prime": -166.254, "theta_prime": -128.605, "eta_base": -107.742, "theta_base": -107.935, "v0": 2.519, "v1": -24.660, "v2": 36.230, "v3": -35.774, "v4": 20.970, "amplitude": 37.482, "phase_angle": 14.850, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.917, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 186.522, 169.872, 146.143 ], "x_axis": [ -0.229, -0.400, -0.888 ], "y_axis": [ -0.973, 0.104, 0.204 ], "z_axis": [ 0.011, 0.911, -0.413 ], "quaternion": [ 0.340, -0.519, 0.661, 0.422 ] } }, { "index": 711, "index_chain": 711, "chain_name": "2", "nt_resnum": 864, "nt_name": "A", "nt_code": "A", "nt_id": "///2/864", "linked_nts": [ "///2/863", "///2/865" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -74.579, "beta": 170.081, "gamma": 45.652, "delta": 79.897, "epsilon": -158.103, "zeta": -78.249, "epsilon_zeta": -79.854, "bb_type": "BI", "chi": -159.389, "glyco_bond": "anti", "C5prime_xyz": [ -1.600, 8.751, 0.490 ], "P_xyz": [ 0.909, 9.377, 0.871 ], "form": "A", "ssZp": 4.367, "Dp": 4.525, "splay_angle": 22.236, "splay_distance": 3.513, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 142.097, "theta": -158.419, "eta_prime": 158.262, "theta_prime": -158.332, "eta_base": -164.988, "theta_base": -140.609, "v0": 1.255, "v1": -23.689, "v2": 35.776, "v3": -36.185, "v4": 21.938, "amplitude": 37.365, "phase_angle": 16.770, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.320, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 186.745, 172.157, 143.228 ], "x_axis": [ -0.535, -0.844, -0.034 ], "y_axis": [ -0.684, 0.409, 0.604 ], "z_axis": [ -0.496, 0.347, -0.796 ], "quaternion": [ -0.140, -0.461, 0.828, 0.287 ] } }, { "index": 712, "index_chain": 712, "chain_name": "2", "nt_resnum": 865, "nt_name": "A", "nt_code": "A", "nt_id": "///2/865", "linked_nts": [ "///2/864", "///2/866" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end", "alpha": -62.623, "beta": 166.443, "gamma": 58.237, "delta": 81.372, "epsilon": -143.900, "zeta": -70.212, "epsilon_zeta": -73.688, "bb_type": "BI", "chi": -163.380, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.704, 0.725 ], "P_xyz": [ 1.127, 9.138, 0.778 ], "form": ".", "ssZp": 4.466, "Dp": 4.634, "splay_angle": 27.762, "splay_distance": 4.350, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 171.888, "theta": -137.262, "eta_prime": -178.810, "theta_prime": -135.245, "eta_base": -150.667, "theta_base": -97.592, "v0": 1.619, "v1": -23.545, "v2": 35.258, "v3": -35.313, "v4": 21.268, "amplitude": 36.706, "phase_angle": 16.147, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.881, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 186.487, 172.820, 139.788 ], "x_axis": [ -0.764, -0.594, 0.250 ], "y_axis": [ -0.415, 0.751, 0.514 ], "z_axis": [ -0.493, 0.289, -0.820 ], "quaternion": [ -0.204, -0.276, 0.913, 0.220 ] } }, { "index": 713, "index_chain": 713, "chain_name": "2", "nt_resnum": 866, "nt_name": "U", "nt_code": "U", "nt_id": "///2/866", "linked_nts": [ "///2/865", "///2/867" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -61.864, "beta": 165.983, "gamma": 59.842, "delta": 81.665, "epsilon": -120.251, "zeta": -96.782, "epsilon_zeta": -23.469, "bb_type": "--", "chi": -159.955, "glyco_bond": "anti", "C5prime_xyz": [ -1.385, 8.716, 0.526 ], "P_xyz": [ 1.208, 9.077, 0.365 ], "form": ".", "ssZp": 4.272, "Dp": 4.730, "splay_angle": 19.596, "splay_distance": 3.116, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 176.225, "theta": -145.819, "eta_prime": -166.760, "theta_prime": -141.653, "eta_base": -114.761, "theta_base": -147.815, "v0": 2.414, "v1": -24.189, "v2": 35.544, "v3": -35.138, "v4": 20.636, "amplitude": 36.786, "phase_angle": 14.931, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 183.029, 172.309, 137.199 ], "x_axis": [ -0.839, 0.082, 0.538 ], "y_axis": [ 0.199, 0.966, 0.164 ], "z_axis": [ -0.506, 0.244, -0.827 ], "quaternion": [ -0.274, 0.074, 0.953, 0.107 ] } }, { "index": 714, "index_chain": 714, "chain_name": "2", "nt_resnum": 867, "nt_name": "G", "nt_code": "G", "nt_id": "///2/867", "linked_nts": [ "///2/866", "///2/868" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -74.369, "beta": 176.085, "gamma": 48.655, "delta": 84.224, "epsilon": -170.978, "zeta": -96.175, "epsilon_zeta": -74.803, "bb_type": "BI", "chi": -118.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.549, 8.305, -1.785 ], "P_xyz": [ 0.969, 8.525, -2.496 ], "form": ".", "ssZp": 2.782, "Dp": 4.420, "splay_angle": 25.022, "splay_distance": 4.115, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 155.702, "theta": -177.820, "eta_prime": 165.171, "theta_prime": -174.078, "eta_base": 168.688, "theta_base": -173.877, "v0": 4.784, "v1": -24.952, "v2": 34.513, "v3": -32.703, "v4": 17.660, "amplitude": 35.158, "phase_angle": 10.989, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.357, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 181.902, 172.206, 134.296 ], "x_axis": [ -0.430, 0.317, 0.845 ], "y_axis": [ 0.096, 0.947, -0.307 ], "z_axis": [ -0.898, -0.051, -0.437 ], "quaternion": [ 0.520, -0.123, -0.839, 0.107 ] } }, { "index": 715, "index_chain": 715, "chain_name": "2", "nt_resnum": 868, "nt_name": "G", "nt_code": "G", "nt_id": "///2/868", "linked_nts": [ "///2/867", "///2/869" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop", "alpha": -51.338, "beta": 149.173, "gamma": 78.468, "delta": 149.514, "epsilon": -106.156, "zeta": -77.085, "epsilon_zeta": -29.070, "bb_type": "--", "chi": -111.183, "glyco_bond": "anti", "C5prime_xyz": [ -1.927, 8.362, -1.606 ], "P_xyz": [ 0.628, 8.208, -2.206 ], "form": ".", "ssZp": 0.917, "Dp": 1.039, "splay_angle": 69.577, "splay_distance": 11.105, "splay_ratio": 0.572, "d22": null, "d64": null, "eta": -155.872, "theta": -25.677, "eta_prime": -132.586, "theta_prime": -90.754, "eta_base": -141.080, "theta_base": -119.568, "v0": -19.236, "v1": 34.599, "v2": -35.936, "v3": 25.728, "v4": -4.264, "amplitude": 36.761, "phase_angle": 167.834, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.135, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 179.337, 172.079, 131.080 ], "x_axis": [ -0.380, 0.421, 0.824 ], "y_axis": [ -0.001, 0.890, -0.455 ], "z_axis": [ -0.925, -0.174, -0.338 ], "quaternion": [ 0.541, -0.130, -0.808, 0.195 ] } }, { "index": 716, "index_chain": 716, "chain_name": "2", "nt_resnum": 869, "nt_name": "A", "nt_code": "A", "nt_id": "///2/869", "linked_nts": [ "///2/868", "///2/870" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,ss-non-loop", "alpha": 178.158, "beta": -150.394, "gamma": 57.654, "delta": 144.289, "epsilon": -115.927, "zeta": -176.292, "epsilon_zeta": 60.365, "bb_type": "BII", "chi": -69.380, "glyco_bond": "--", "C5prime_xyz": [ -3.263, 6.907, -2.985 ], "P_xyz": [ -1.216, 8.163, -4.039 ], "form": ".", "ssZp": 0.691, "Dp": 1.330, "splay_angle": 51.515, "splay_distance": 8.998, "splay_ratio": 0.435, "d22": null, "d64": null, "eta": 58.213, "theta": -148.991, "eta_prime": 124.365, "theta_prime": -156.839, "eta_base": 132.198, "theta_base": -161.586, "v0": -23.192, "v1": 36.165, "v2": -34.611, "v3": 22.129, "v4": 0.476, "amplitude": 36.715, "phase_angle": 160.508, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2z", "suiteness": 0.562, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 172.221, 173.384, 122.656 ], "x_axis": [ 0.087, -0.432, 0.898 ], "y_axis": [ 0.695, 0.672, 0.256 ], "z_axis": [ -0.714, 0.602, 0.358 ], "quaternion": [ 0.728, -0.119, -0.554, -0.387 ] } }, { "index": 717, "index_chain": 717, "chain_name": "2", "nt_resnum": 870, "nt_name": "A", "nt_code": "A", "nt_id": "///2/870", "linked_nts": [ "///2/869", "///2/871" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 23.481, "beta": 140.156, "gamma": -60.206, "delta": 148.516, "epsilon": -98.928, "zeta": 102.685, "epsilon_zeta": 158.386, "bb_type": "--", "chi": -69.808, "glyco_bond": "--", "C5prime_xyz": [ -3.013, 6.884, -2.996 ], "P_xyz": [ -2.480, 9.180, -4.139 ], "form": ".", "ssZp": 0.254, "Dp": 0.894, "splay_angle": 146.960, "splay_distance": 18.399, "splay_ratio": 0.959, "d22": null, "d64": null, "eta": 176.182, "theta": 118.970, "eta_prime": 175.317, "theta_prime": 89.875, "eta_base": 174.790, "theta_base": 73.313, "v0": -19.937, "v1": 34.887, "v2": -35.684, "v3": 25.082, "v4": -3.438, "amplitude": 36.694, "phase_angle": 166.531, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 167.328, 180.935, 122.601 ], "x_axis": [ -0.007, -0.659, 0.752 ], "y_axis": [ 0.936, 0.259, 0.236 ], "z_axis": [ -0.351, 0.706, 0.616 ], "quaternion": [ 0.683, -0.172, -0.403, -0.584 ] } }, { "index": 718, "index_chain": 718, "chain_name": "2", "nt_resnum": 871, "nt_name": "U", "nt_code": "U", "nt_id": "///2/871", "linked_nts": [ "///2/870", "///2/872" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 54.172, "beta": 166.479, "gamma": 64.863, "delta": 147.968, "epsilon": -107.922, "zeta": -73.304, "epsilon_zeta": -34.618, "bb_type": "--", "chi": -144.882, "glyco_bond": "anti", "C5prime_xyz": [ -1.676, 8.669, 0.165 ], "P_xyz": [ 0.756, 8.795, 1.156 ], "form": ".", "ssZp": 1.134, "Dp": 1.139, "splay_angle": 128.252, "splay_distance": 17.200, "splay_ratio": 0.900, "d22": null, "d64": null, "eta": -7.845, "theta": -30.524, "eta_prime": 6.159, "theta_prime": -61.494, "eta_base": 20.909, "theta_base": -63.309, "v0": -19.084, "v1": 33.962, "v2": -35.042, "v3": 24.930, "v4": -3.862, "amplitude": 35.917, "phase_angle": 167.326, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.684, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 180.985, 190.160, 114.421 ], "x_axis": [ 0.596, 0.206, 0.776 ], "y_axis": [ -0.736, -0.246, 0.631 ], "z_axis": [ 0.321, -0.947, 0.005 ], "quaternion": [ 0.582, 0.678, -0.195, 0.404 ] } }, { "index": 719, "index_chain": 719, "chain_name": "2", "nt_resnum": 872, "nt_name": "A", "nt_code": "A", "nt_id": "///2/872", "linked_nts": [ "///2/871", "///2/873" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,splayed-apart", "alpha": 102.223, "beta": -123.096, "gamma": -71.044, "delta": 145.685, "epsilon": -124.319, "zeta": -110.715, "epsilon_zeta": -13.604, "bb_type": "--", "chi": 65.477, "glyco_bond": "syn", "C5prime_xyz": [ -5.310, 4.143, 1.475 ], "P_xyz": [ -7.553, 4.148, 2.844 ], "form": ".", "ssZp": -1.466, "Dp": 1.469, "splay_angle": 152.241, "splay_distance": 17.564, "splay_ratio": 0.971, "d22": null, "d64": null, "eta": -95.681, "theta": -174.551, "eta_prime": -61.252, "theta_prime": 167.600, "eta_base": -34.327, "theta_base": 118.339, "v0": -22.829, "v1": 36.432, "v2": -35.347, "v3": 23.108, "v4": -0.387, "amplitude": 37.208, "phase_angle": 161.801, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 169.685, 177.581, 117.576 ], "x_axis": [ 0.135, -0.700, 0.701 ], "y_axis": [ 0.957, 0.275, 0.090 ], "z_axis": [ -0.256, 0.659, 0.708 ], "quaternion": [ 0.728, -0.195, -0.329, -0.570 ] } }, { "index": 720, "index_chain": 720, "chain_name": "2", "nt_resnum": 873, "nt_name": "G", "nt_code": "G", "nt_id": "///2/873", "linked_nts": [ "///2/872", "///2/874" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -136.400, "beta": 165.128, "gamma": -63.019, "delta": 147.313, "epsilon": -107.646, "zeta": -75.066, "epsilon_zeta": -32.581, "bb_type": "--", "chi": 49.915, "glyco_bond": "syn", "C5prime_xyz": [ -5.448, 3.848, 0.638 ], "P_xyz": [ -7.694, 2.691, -0.084 ], "form": ".", "ssZp": -1.116, "Dp": 1.095, "splay_angle": 154.022, "splay_distance": 19.297, "splay_ratio": 0.974, "d22": null, "d64": null, "eta": 16.429, "theta": -52.639, "eta_prime": 33.365, "theta_prime": -87.338, "eta_base": 54.435, "theta_base": -26.789, "v0": -21.891, "v1": 36.248, "v2": -35.961, "v3": 24.257, "v4": -1.675, "amplitude": 37.453, "phase_angle": 163.775, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 184.230, 186.045, 112.546 ], "x_axis": [ 0.996, 0.052, -0.075 ], "y_axis": [ 0.047, -0.997, -0.062 ], "z_axis": [ -0.078, 0.058, -0.995 ], "quaternion": [ -0.030, 0.999, 0.025, -0.038 ] } }, { "index": 721, "index_chain": 721, "chain_name": "2", "nt_resnum": 874, "nt_name": "G", "nt_code": "G", "nt_id": "///2/874", "linked_nts": [ "///2/873", "///2/875" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart", "alpha": 133.973, "beta": 132.807, "gamma": -46.128, "delta": 84.075, "epsilon": 163.661, "zeta": 30.593, "epsilon_zeta": 133.068, "bb_type": "--", "chi": -154.669, "glyco_bond": "anti", "C5prime_xyz": [ -0.724, 8.589, 0.242 ], "P_xyz": [ 1.027, 9.444, 1.989 ], "form": ".", "ssZp": 4.152, "Dp": 4.256, "splay_angle": 28.423, "splay_distance": 5.094, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": -142.172, "theta": -121.460, "eta_prime": -88.891, "theta_prime": -137.484, "eta_base": -131.096, "theta_base": -138.873, "v0": 8.891, "v1": -28.532, "v2": 36.279, "v3": -32.162, "v4": 14.769, "amplitude": 36.410, "phase_angle": 4.867, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 170.829, 172.666, 116.256 ], "x_axis": [ -0.364, 0.318, -0.875 ], "y_axis": [ 0.764, 0.640, -0.085 ], "z_axis": [ 0.533, -0.699, -0.476 ], "quaternion": [ 0.447, 0.344, 0.787, -0.249 ] } }, { "index": 722, "index_chain": 722, "chain_name": "2", "nt_resnum": 875, "nt_name": "A", "nt_code": "A", "nt_id": "///2/875", "linked_nts": [ "///2/874", "///2/876" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -174.484, "beta": 85.811, "gamma": 167.610, "delta": 82.719, "epsilon": -125.175, "zeta": -46.797, "epsilon_zeta": -78.378, "bb_type": "--", "chi": 165.641, "glyco_bond": "anti", "C5prime_xyz": [ -1.795, 8.012, 2.369 ], "P_xyz": [ -1.833, 10.417, 1.329 ], "form": ".", "ssZp": 4.525, "Dp": 4.667, "splay_angle": 36.833, "splay_distance": 5.740, "splay_ratio": 0.320, "d22": null, "d64": null, "eta": 168.364, "theta": -162.852, "eta_prime": 173.854, "theta_prime": -143.324, "eta_base": -179.585, "theta_base": -81.872, "v0": 2.025, "v1": -23.192, "v2": 34.325, "v3": -34.137, "v4": 20.259, "amplitude": 35.611, "phase_angle": 15.440, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 170.786, 167.622, 115.540 ], "x_axis": [ -0.482, 0.541, -0.689 ], "y_axis": [ 0.706, 0.705, 0.059 ], "z_axis": [ 0.518, -0.458, -0.722 ], "quaternion": [ 0.354, 0.366, 0.853, -0.117 ] } }, { "index": 723, "index_chain": 723, "chain_name": "2", "nt_resnum": 876, "nt_name": "C", "nt_code": "C", "nt_id": "///2/876", "linked_nts": [ "///2/875", "///2/877" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -76.031, "beta": -168.722, "gamma": 45.039, "delta": 82.374, "epsilon": -163.485, "zeta": -93.059, "epsilon_zeta": -70.426, "bb_type": "BI", "chi": -146.817, "glyco_bond": "anti", "C5prime_xyz": [ -1.262, 8.791, -0.217 ], "P_xyz": [ 1.246, 9.372, 0.296 ], "form": ".", "ssZp": 4.028, "Dp": 4.475, "splay_angle": 31.525, "splay_distance": 4.998, "splay_ratio": 0.272, "d22": 5.334, "d64": 5.714, "eta": 150.709, "theta": -174.010, "eta_prime": -177.351, "theta_prime": -172.019, "eta_base": -98.945, "theta_base": -162.811, "v0": 2.189, "v1": -23.520, "v2": 34.741, "v3": -34.406, "v4": 20.332, "amplitude": 35.999, "phase_angle": 15.189, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.398, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 171.799, 169.124, 110.093 ], "x_axis": [ 0.506, 0.848, -0.157 ], "y_axis": [ 0.710, -0.306, 0.633 ], "z_axis": [ 0.489, -0.432, -0.758 ], "quaternion": [ 0.332, 0.802, 0.486, 0.104 ] } }, { "index": 724, "index_chain": 724, "chain_name": "2", "nt_resnum": 877, "nt_name": "C", "nt_code": "C", "nt_id": "///2/877", "linked_nts": [ "///2/876", "///2/878" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -49.716, "beta": 157.692, "gamma": 57.686, "delta": 80.941, "epsilon": -132.950, "zeta": -95.493, "epsilon_zeta": -37.457, "bb_type": "BI", "chi": -157.075, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.803, 0.345 ], "P_xyz": [ 1.259, 9.054, 0.007 ], "form": ".", "ssZp": 4.251, "Dp": 4.687, "splay_angle": 25.298, "splay_distance": 4.287, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": -178.156, "theta": -111.994, "eta_prime": -174.753, "theta_prime": -117.945, "eta_base": -164.618, "theta_base": -82.937, "v0": 1.596, "v1": -23.631, "v2": 35.495, "v3": -35.536, "v4": 21.401, "amplitude": 36.960, "phase_angle": 16.187, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.633, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 171.781, 165.673, 106.478 ], "x_axis": [ 0.664, 0.740, -0.113 ], "y_axis": [ 0.596, -0.431, 0.677 ], "z_axis": [ 0.452, -0.517, -0.727 ], "quaternion": [ 0.355, 0.840, 0.398, 0.101 ] } }, { "index": 725, "index_chain": 725, "chain_name": "2", "nt_resnum": 878, "nt_name": "G", "nt_code": "G", "nt_id": "///2/878", "linked_nts": [ "///2/877", "///2/879" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 126.594, "beta": -122.784, "gamma": -170.432, "delta": 81.193, "epsilon": -127.179, "zeta": -80.744, "epsilon_zeta": -46.434, "bb_type": "--", "chi": -172.131, "glyco_bond": "anti", "C5prime_xyz": [ -1.477, 8.610, 1.227 ], "P_xyz": [ -0.248, 10.000, -0.628 ], "form": ".", "ssZp": 4.642, "Dp": 4.735, "splay_angle": 23.148, "splay_distance": 4.640, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 165.759, "theta": -134.774, "eta_prime": -169.098, "theta_prime": -148.760, "eta_base": -108.835, "theta_base": -134.363, "v0": 2.532, "v1": -24.595, "v2": 36.107, "v3": -35.637, "v4": 20.878, "amplitude": 37.348, "phase_angle": 14.813, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.043, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 175.213, 166.980, 104.264 ], "x_axis": [ 0.862, 0.367, 0.350 ], "y_axis": [ 0.202, -0.881, 0.427 ], "z_axis": [ 0.465, -0.297, -0.834 ], "quaternion": [ 0.191, 0.946, 0.150, 0.215 ] } }, { "index": 726, "index_chain": 726, "chain_name": "2", "nt_resnum": 879, "nt_name": "C", "nt_code": "C", "nt_id": "///2/879", "linked_nts": [ "///2/878", "///2/880" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": 86.144, "beta": -157.801, "gamma": -114.513, "delta": 82.325, "epsilon": -136.993, "zeta": -70.709, "epsilon_zeta": -66.284, "bb_type": "BI", "chi": -165.780, "glyco_bond": "anti", "C5prime_xyz": [ -1.108, 8.638, 0.890 ], "P_xyz": [ -0.615, 11.190, 0.521 ], "form": "A", "ssZp": 4.553, "Dp": 4.714, "splay_angle": 25.188, "splay_distance": 3.930, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 163.468, "theta": 178.669, "eta_prime": 174.084, "theta_prime": -167.032, "eta_base": -151.609, "theta_base": -118.128, "v0": 4.591, "v1": -25.829, "v2": 36.101, "v3": -34.448, "v4": 18.831, "amplitude": 36.857, "phase_angle": 11.626, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 177.840, 169.431, 101.328 ], "x_axis": [ 0.774, -0.008, 0.633 ], "y_axis": [ -0.138, -0.978, 0.155 ], "z_axis": [ 0.618, -0.207, -0.759 ], "quaternion": [ 0.097, 0.937, -0.039, 0.334 ] } }, { "index": 727, "index_chain": 727, "chain_name": "2", "nt_resnum": 880, "nt_name": "G", "nt_code": "G", "nt_id": "///2/880", "linked_nts": [ "///2/879", "///2/881" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -69.455, "beta": 177.710, "gamma": 47.449, "delta": 81.171, "epsilon": -148.426, "zeta": -75.448, "epsilon_zeta": -72.979, "bb_type": "BI", "chi": -169.714, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.592, 1.103 ], "P_xyz": [ 1.268, 8.840, 1.745 ], "form": ".", "ssZp": 4.634, "Dp": 4.677, "splay_angle": 21.828, "splay_distance": 4.026, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 157.449, "theta": -125.185, "eta_prime": 173.698, "theta_prime": -137.391, "eta_base": -131.023, "theta_base": -139.721, "v0": 4.717, "v1": -26.449, "v2": 36.949, "v3": -35.260, "v4": 19.276, "amplitude": 37.721, "phase_angle": 11.613, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.877, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 181.565, 169.181, 100.102 ], "x_axis": [ 0.165, -0.552, 0.817 ], "y_axis": [ -0.626, -0.699, -0.346 ], "z_axis": [ 0.762, -0.454, -0.461 ], "quaternion": [ 0.035, 0.763, -0.386, 0.518 ] } }, { "index": 728, "index_chain": 728, "chain_name": "2", "nt_resnum": 881, "nt_name": "G", "nt_code": "G", "nt_id": "///2/881", "linked_nts": [ "///2/880", "///2/882" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 167.480, "beta": 177.349, "gamma": 165.496, "delta": 81.788, "epsilon": -145.179, "zeta": -85.057, "epsilon_zeta": -60.123, "bb_type": "BI", "chi": -171.558, "glyco_bond": "anti", "C5prime_xyz": [ -1.274, 8.584, 1.213 ], "P_xyz": [ 0.187, 10.423, 0.044 ], "form": ".", "ssZp": 4.637, "Dp": 4.672, "splay_angle": 30.547, "splay_distance": 4.687, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 151.540, "theta": 178.844, "eta_prime": 164.156, "theta_prime": -173.289, "eta_base": 179.005, "theta_base": -150.244, "v0": 3.960, "v1": -25.474, "v2": 36.120, "v3": -34.839, "v4": 19.479, "amplitude": 37.014, "phase_angle": 12.617, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.523, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 185.415, 170.353, 99.986 ], "x_axis": [ -0.298, -0.597, 0.745 ], "y_axis": [ -0.472, -0.586, -0.659 ], "z_axis": [ 0.830, -0.547, -0.107 ], "quaternion": [ -0.047, 0.591, -0.453, 0.666 ] } }, { "index": 729, "index_chain": 729, "chain_name": "2", "nt_resnum": 882, "nt_name": "U", "nt_code": "U", "nt_id": "///2/882", "linked_nts": [ "///2/881", "///2/883" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -57.231, "beta": 171.528, "gamma": 57.733, "delta": 83.208, "epsilon": -142.418, "zeta": -82.174, "epsilon_zeta": -60.243, "bb_type": "BI", "chi": -165.206, "glyco_bond": "anti", "C5prime_xyz": [ -1.304, 8.641, 0.862 ], "P_xyz": [ 1.297, 8.902, 1.114 ], "form": "A", "ssZp": 4.504, "Dp": 4.642, "splay_angle": 27.739, "splay_distance": 4.313, "splay_ratio": 0.240, "d22": 4.888, "d64": 4.770, "eta": -179.428, "theta": -146.462, "eta_prime": -170.489, "theta_prime": -143.989, "eta_base": -145.360, "theta_base": -120.783, "v0": 3.091, "v1": -24.040, "v2": 34.657, "v3": -33.844, "v4": 19.418, "amplitude": 35.682, "phase_angle": 13.765, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.817, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 189.940, 169.325, 100.644 ], "x_axis": [ -0.518, -0.772, 0.369 ], "y_axis": [ -0.344, -0.207, -0.916 ], "z_axis": [ 0.783, -0.601, -0.158 ], "quaternion": [ -0.171, 0.460, -0.606, 0.626 ] } }, { "index": 730, "index_chain": 730, "chain_name": "2", "nt_resnum": 883, "nt_name": "U", "nt_code": "U", "nt_id": "///2/883", "linked_nts": [ "///2/882", "///2/884" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -63.516, "beta": 172.903, "gamma": 55.099, "delta": 82.117, "epsilon": -129.110, "zeta": -89.455, "epsilon_zeta": -39.656, "bb_type": "--", "chi": -157.988, "glyco_bond": "anti", "C5prime_xyz": [ -1.215, 8.679, 0.415 ], "P_xyz": [ 1.400, 8.931, 0.431 ], "form": ".", "ssZp": 4.301, "Dp": 4.747, "splay_angle": 29.966, "splay_distance": 4.733, "splay_ratio": 0.259, "d22": 5.047, "d64": 5.060, "eta": 174.907, "theta": -143.915, "eta_prime": -175.883, "theta_prime": -138.732, "eta_base": -143.975, "theta_base": -114.723, "v0": 4.414, "v1": -25.739, "v2": 36.135, "v3": -34.577, "v4": 19.038, "amplitude": 36.930, "phase_angle": 11.912, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.896, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 193.269, 166.663, 101.301 ], "x_axis": [ -0.699, -0.694, -0.172 ], "y_axis": [ 0.003, 0.238, -0.971 ], "z_axis": [ 0.715, -0.680, -0.164 ], "quaternion": [ 0.306, -0.238, 0.725, -0.569 ] } }, { "index": 731, "index_chain": 731, "chain_name": "2", "nt_resnum": 884, "nt_name": "C", "nt_code": "C", "nt_id": "///2/884", "linked_nts": [ "///2/883", "///2/885" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -60.240, "beta": 159.942, "gamma": 66.326, "delta": 80.986, "epsilon": -148.633, "zeta": -44.234, "epsilon_zeta": -104.400, "bb_type": "BI", "chi": -149.662, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.812, -0.116 ], "P_xyz": [ 1.133, 9.053, -0.929 ], "form": ".", "ssZp": 4.102, "Dp": 4.632, "splay_angle": 22.899, "splay_distance": 4.027, "splay_ratio": 0.206, "d22": 4.556, "d64": 4.986, "eta": 173.753, "theta": -117.370, "eta_prime": -171.624, "theta_prime": -130.258, "eta_base": -138.124, "theta_base": -113.521, "v0": 1.624, "v1": -23.734, "v2": 35.595, "v3": -35.629, "v4": 21.471, "amplitude": 37.059, "phase_angle": 16.159, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.501, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 195.345, 162.431, 100.881 ], "x_axis": [ -0.666, -0.384, -0.639 ], "y_axis": [ 0.437, 0.493, -0.752 ], "z_axis": [ 0.604, -0.781, -0.161 ], "quaternion": [ 0.408, 0.017, 0.762, -0.503 ] } }, { "index": 732, "index_chain": 732, "chain_name": "2", "nt_resnum": 885, "nt_name": "U", "nt_code": "U", "nt_id": "///2/885", "linked_nts": [ "///2/884", "///2/886" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor", "alpha": -149.662, "beta": 146.593, "gamma": 146.711, "delta": 82.177, "epsilon": -132.147, "zeta": -102.070, "epsilon_zeta": -30.077, "bb_type": "--", "chi": -155.283, "glyco_bond": "anti", "C5prime_xyz": [ -1.338, 8.717, 0.237 ], "P_xyz": [ -0.476, 10.158, -1.786 ], "form": ".", "ssZp": 4.218, "Dp": 4.722, "splay_angle": 30.360, "splay_distance": 5.512, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": 167.567, "theta": -173.669, "eta_prime": -176.129, "theta_prime": 174.667, "eta_base": -139.230, "theta_base": 160.851, "v0": 3.366, "v1": -24.843, "v2": 35.679, "v3": -34.722, "v4": 19.807, "amplitude": 36.690, "phase_angle": 13.479, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 195.115, 158.551, 99.826 ], "x_axis": [ -0.473, -0.076, -0.878 ], "y_axis": [ 0.802, 0.374, -0.465 ], "z_axis": [ 0.364, -0.924, -0.116 ], "quaternion": [ 0.443, 0.259, 0.701, -0.496 ] } }, { "index": 733, "index_chain": 733, "chain_name": "2", "nt_resnum": 886, "nt_name": "A", "nt_code": "A", "nt_id": "///2/886", "linked_nts": [ "///2/885", "///2/887" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,A-minor,phosphate", "alpha": 67.808, "beta": -129.184, "gamma": -88.833, "delta": 81.025, "epsilon": -119.480, "zeta": -28.115, "epsilon_zeta": -91.364, "bb_type": "--", "chi": -105.511, "glyco_bond": "anti", "C5prime_xyz": [ -1.997, 7.910, -2.444 ], "P_xyz": [ -2.996, 9.613, -4.171 ], "form": ".", "ssZp": 0.846, "Dp": 4.718, "splay_angle": 83.594, "splay_distance": 11.315, "splay_ratio": 0.687, "d22": null, "d64": null, "eta": -163.689, "theta": -106.319, "eta_prime": -172.602, "theta_prime": -85.281, "eta_base": 174.210, "theta_base": -24.959, "v0": 2.105, "v1": -23.913, "v2": 35.418, "v3": -35.207, "v4": 20.888, "amplitude": 36.742, "phase_angle": 15.426, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 195.349, 154.324, 103.354 ], "x_axis": [ -0.334, -0.809, -0.484 ], "y_axis": [ 0.910, -0.142, -0.390 ], "z_axis": [ 0.247, -0.570, 0.783 ], "quaternion": [ 0.572, 0.079, 0.320, -0.751 ] } }, { "index": 734, "index_chain": 734, "chain_name": "2", "nt_resnum": 887, "nt_name": "U", "nt_code": "U", "nt_id": "///2/887", "linked_nts": [ "///2/886", "///2/888" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 153.937, "beta": -155.518, "gamma": 179.092, "delta": 145.572, "epsilon": -99.947, "zeta": -105.029, "epsilon_zeta": 5.082, "bb_type": "--", "chi": 51.362, "glyco_bond": "syn", "C5prime_xyz": [ -5.463, 3.891, 0.734 ], "P_xyz": [ -5.628, 1.871, 2.408 ], "form": ".", "ssZp": -1.016, "Dp": 0.986, "splay_angle": 96.040, "splay_distance": 14.131, "splay_ratio": 0.745, "d22": 7.362, "d64": 7.523, "eta": -154.833, "theta": -118.678, "eta_prime": -117.256, "theta_prime": -176.192, "eta_base": -68.734, "theta_base": 148.352, "v0": -21.783, "v1": 35.335, "v2": -34.636, "v3": 22.963, "v4": -0.924, "amplitude": 36.280, "phase_angle": 162.685, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.010, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 203.155, 156.622, 95.493 ], "x_axis": [ -0.652, 0.586, -0.481 ], "y_axis": [ -0.735, -0.646, 0.208 ], "z_axis": [ -0.189, 0.489, 0.852 ], "quaternion": [ 0.372, -0.189, 0.196, 0.887 ] } }, { "index": 735, "index_chain": 735, "chain_name": "2", "nt_resnum": 888, "nt_name": "U", "nt_code": "U", "nt_id": "///2/888", "linked_nts": [ "///2/887", "///2/889" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 165.922, "beta": 144.894, "gamma": 58.264, "delta": 81.639, "epsilon": -121.268, "zeta": -93.209, "epsilon_zeta": -28.059, "bb_type": "--", "chi": -161.378, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.706, 0.609 ], "P_xyz": [ 1.180, 8.820, 0.091 ], "form": ".", "ssZp": 4.335, "Dp": 4.735, "splay_angle": 38.863, "splay_distance": 5.983, "splay_ratio": 0.334, "d22": 4.706, "d64": 5.059, "eta": 16.355, "theta": -131.618, "eta_prime": 80.997, "theta_prime": -126.652, "eta_base": 90.811, "theta_base": -91.116, "v0": 2.431, "v1": -24.250, "v2": 35.612, "v3": -35.205, "v4": 20.678, "amplitude": 36.854, "phase_angle": 14.919, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2g", "suiteness": 0.296, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 193.161, 146.648, 96.049 ], "x_axis": [ -0.046, 0.964, 0.262 ], "y_axis": [ 0.942, -0.045, 0.333 ], "z_axis": [ 0.333, 0.262, -0.906 ], "quaternion": [ 0.026, 0.690, 0.690, 0.215 ] } }, { "index": 736, "index_chain": 736, "chain_name": "2", "nt_resnum": 889, "nt_name": "U", "nt_code": "U", "nt_id": "///2/889", "linked_nts": [ "///2/888", "///2/890" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop", "alpha": -37.326, "beta": 141.031, "gamma": 60.251, "delta": 81.968, "epsilon": -130.592, "zeta": -156.212, "epsilon_zeta": 25.621, "bb_type": "--", "chi": -158.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.252, 8.677, 0.466 ], "P_xyz": [ 1.253, 8.602, -0.308 ], "form": ".", "ssZp": 4.341, "Dp": 4.743, "splay_angle": 47.622, "splay_distance": 7.477, "splay_ratio": 0.404, "d22": 7.030, "d64": 7.847, "eta": 177.709, "theta": -160.534, "eta_prime": -159.023, "theta_prime": -154.499, "eta_base": -106.698, "theta_base": -153.017, "v0": 4.187, "v1": -25.721, "v2": 36.325, "v3": -34.883, "v4": 19.362, "amplitude": 37.176, "phase_angle": 12.281, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.673, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 195.901, 151.089, 93.122 ], "x_axis": [ 0.710, 0.563, 0.423 ], "y_axis": [ 0.617, -0.787, 0.010 ], "z_axis": [ 0.339, 0.254, -0.906 ], "quaternion": [ -0.066, 0.922, 0.320, 0.207 ] } }, { "index": 737, "index_chain": 737, "chain_name": "2", "nt_resnum": 890, "nt_name": "U", "nt_code": "U", "nt_id": "///2/890", "linked_nts": [ "///2/889", "///2/891" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 145.343, "beta": -108.260, "gamma": 179.922, "delta": 81.426, "epsilon": -108.469, "zeta": 121.615, "epsilon_zeta": 129.916, "bb_type": "--", "chi": -160.764, "glyco_bond": "anti", "C5prime_xyz": [ -1.411, 8.724, 0.567 ], "P_xyz": [ -0.256, 9.253, -1.725 ], "form": ".", "ssZp": 4.178, "Dp": 4.722, "splay_angle": 165.418, "splay_distance": 20.677, "splay_ratio": 0.992, "d22": null, "d64": null, "eta": -163.094, "theta": 67.748, "eta_prime": -169.436, "theta_prime": 58.816, "eta_base": -170.352, "theta_base": -112.948, "v0": 2.033, "v1": -23.986, "v2": 35.586, "v3": -35.392, "v4": 21.054, "amplitude": 36.934, "phase_angle": 15.526, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 196.378, 153.048, 85.922 ], "x_axis": [ 0.763, 0.516, 0.388 ], "y_axis": [ 0.525, -0.846, 0.093 ], "z_axis": [ 0.376, 0.133, -0.917 ], "quaternion": [ -0.011, 0.939, 0.277, 0.204 ] } }, { "index": 738, "index_chain": 738, "chain_name": "2", "nt_resnum": 891, "nt_name": "G", "nt_code": "G", "nt_id": "///2/891", "linked_nts": [ "///2/890", "///2/892" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,hairpin-loop,splayed-apart", "alpha": 152.162, "beta": -164.490, "gamma": -93.736, "delta": 80.856, "epsilon": -132.658, "zeta": -51.824, "epsilon_zeta": -80.833, "bb_type": "BI", "chi": -157.161, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.773, 0.340 ], "P_xyz": [ -1.031, 11.381, 0.323 ], "form": ".", "ssZp": 4.289, "Dp": 4.731, "splay_angle": 34.954, "splay_distance": 6.348, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": -55.632, "theta": -142.863, "eta_prime": -66.584, "theta_prime": -151.315, "eta_base": 104.646, "theta_base": -136.514, "v0": 2.990, "v1": -24.976, "v2": 36.243, "v3": -35.537, "v4": 20.530, "amplitude": 37.375, "phase_angle": 14.140, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 206.981, 138.242, 76.131 ], "x_axis": [ 0.615, 0.706, -0.352 ], "y_axis": [ -0.552, 0.704, 0.448 ], "z_axis": [ 0.564, -0.082, 0.822 ], "quaternion": [ 0.886, 0.149, 0.258, 0.355 ] } }, { "index": 739, "index_chain": 739, "chain_name": "2", "nt_resnum": 892, "nt_name": "U", "nt_code": "U", "nt_id": "///2/892", "linked_nts": [ "///2/891", "///2/893" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,hairpin-loop", "alpha": 162.160, "beta": 143.538, "gamma": 178.764, "delta": 80.512, "epsilon": -99.564, "zeta": -23.626, "epsilon_zeta": -75.939, "bb_type": "--", "chi": -160.698, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.723, 0.565 ], "P_xyz": [ -1.174, 10.993, -0.726 ], "form": ".", "ssZp": 4.078, "Dp": 4.726, "splay_angle": 52.503, "splay_distance": 9.074, "splay_ratio": 0.447, "d22": 4.106, "d64": 5.238, "eta": 141.270, "theta": -87.591, "eta_prime": 157.050, "theta_prime": -95.370, "eta_base": 174.722, "theta_base": -62.916, "v0": 2.182, "v1": -24.468, "v2": 36.215, "v3": -35.955, "v4": 21.286, "amplitude": 37.555, "phase_angle": 15.347, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.571, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 212.813, 138.314, 78.637 ], "x_axis": [ -0.008, 0.719, -0.695 ], "y_axis": [ -0.789, 0.422, 0.446 ], "z_axis": [ 0.614, 0.552, 0.564 ], "quaternion": [ 0.703, -0.038, 0.465, 0.536 ] } }, { "index": 740, "index_chain": 740, "chain_name": "2", "nt_resnum": 893, "nt_name": "U", "nt_code": "U", "nt_id": "///2/893", "linked_nts": [ "///2/892", "///2/894" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,hairpin-loop", "alpha": 158.854, "beta": 152.701, "gamma": 169.378, "delta": 81.010, "epsilon": -119.148, "zeta": -107.415, "epsilon_zeta": -11.734, "bb_type": "--", "chi": -160.008, "glyco_bond": "anti", "C5prime_xyz": [ -1.430, 8.738, 0.526 ], "P_xyz": [ -0.819, 10.775, -1.010 ], "form": ".", "ssZp": 4.260, "Dp": 4.723, "splay_angle": 40.714, "splay_distance": 6.246, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 126.545, "theta": 162.272, "eta_prime": 160.669, "theta_prime": 177.042, "eta_base": -143.778, "theta_base": -147.859, "v0": 1.647, "v1": -23.656, "v2": 35.437, "v3": -35.479, "v4": 21.333, "amplitude": 36.886, "phase_angle": 16.114, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 208.752, 146.012, 76.068 ], "x_axis": [ -0.951, -0.262, -0.165 ], "y_axis": [ -0.090, -0.278, 0.956 ], "z_axis": [ -0.296, 0.924, 0.241 ], "quaternion": [ -0.055, -0.147, 0.598, 0.786 ] } }, { "index": 741, "index_chain": 741, "chain_name": "2", "nt_resnum": 894, "nt_name": "G", "nt_code": "G", "nt_id": "///2/894", "linked_nts": [ "///2/893", "///2/895" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -66.887, "beta": 165.110, "gamma": 51.644, "delta": 82.495, "epsilon": -153.846, "zeta": -51.958, "epsilon_zeta": -101.888, "bb_type": "BI", "chi": 156.289, "glyco_bond": "--", "C5prime_xyz": [ -2.007, 7.772, 2.739 ], "P_xyz": [ 0.188, 7.471, 4.143 ], "form": ".", "ssZp": 3.879, "Dp": 4.540, "splay_angle": 34.760, "splay_distance": 4.976, "splay_ratio": 0.300, "d22": null, "d64": null, "eta": 164.437, "theta": -90.543, "eta_prime": 168.598, "theta_prime": -93.979, "eta_base": -157.340, "theta_base": -30.447, "v0": 1.996, "v1": -23.396, "v2": 34.638, "v3": -34.448, "v4": 20.488, "amplitude": 35.944, "phase_angle": 15.490, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.164, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 206.169, 151.475, 77.647 ], "x_axis": [ -0.200, -0.939, -0.280 ], "y_axis": [ 0.756, -0.330, 0.565 ], "z_axis": [ -0.623, -0.098, 0.776 ], "quaternion": [ 0.558, 0.297, -0.154, -0.759 ] } }, { "index": 742, "index_chain": 742, "chain_name": "2", "nt_resnum": 895, "nt_name": "G", "nt_code": "G", "nt_id": "///2/895", "linked_nts": [ "///2/894", "///2/896" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -156.057, "beta": -117.500, "gamma": 79.456, "delta": 82.860, "epsilon": -128.129, "zeta": -146.896, "epsilon_zeta": 18.767, "bb_type": "--", "chi": -145.005, "glyco_bond": "anti", "C5prime_xyz": [ -1.297, 8.769, -0.371 ], "P_xyz": [ 1.263, 8.449, 0.115 ], "form": ".", "ssZp": 3.708, "Dp": 4.705, "splay_angle": 43.371, "splay_distance": 6.766, "splay_ratio": 0.373, "d22": null, "d64": null, "eta": 142.871, "theta": 173.247, "eta_prime": 173.274, "theta_prime": 178.732, "eta_base": -98.528, "theta_base": 174.763, "v0": 2.614, "v1": -23.995, "v2": 35.063, "v3": -34.498, "v4": 20.121, "amplitude": 36.225, "phase_angle": 14.551, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 205.072, 147.671, 80.662 ], "x_axis": [ 0.713, -0.483, 0.508 ], "y_axis": [ 0.297, 0.865, 0.404 ], "z_axis": [ -0.635, -0.138, 0.761 ], "quaternion": [ 0.914, 0.148, -0.313, -0.213 ] } }, { "index": 743, "index_chain": 743, "chain_name": "2", "nt_resnum": 896, "nt_name": "U", "nt_code": "U", "nt_id": "///2/896", "linked_nts": [ "///2/895", "///2/897" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,hairpin-loop", "alpha": -50.564, "beta": 128.833, "gamma": 54.457, "delta": 83.894, "epsilon": -95.690, "zeta": -163.356, "epsilon_zeta": 67.666, "bb_type": "BII", "chi": -146.090, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.752, -0.304 ], "P_xyz": [ 1.026, 8.412, -1.126 ], "form": ".", "ssZp": 3.241, "Dp": 4.595, "splay_angle": 40.136, "splay_distance": 6.463, "splay_ratio": 0.354, "d22": 6.167, "d64": 5.784, "eta": -171.490, "theta": 172.549, "eta_prime": -178.415, "theta_prime": 178.558, "eta_base": 169.480, "theta_base": 174.563, "v0": 1.191, "v1": -22.041, "v2": 33.293, "v3": -33.529, "v4": 20.426, "amplitude": 34.758, "phase_angle": 16.691, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.513, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 198.823, 149.914, 81.967 ], "x_axis": [ 0.645, -0.662, 0.382 ], "y_axis": [ 0.435, 0.729, 0.528 ], "z_axis": [ -0.628, -0.175, 0.758 ], "quaternion": [ 0.885, 0.199, -0.285, -0.310 ] } }, { "index": 744, "index_chain": 744, "chain_name": "2", "nt_resnum": 897, "nt_name": "U", "nt_code": "U", "nt_id": "///2/897", "linked_nts": [ "///2/896", "///2/898" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop", "alpha": -58.872, "beta": 124.386, "gamma": 45.907, "delta": 84.206, "epsilon": -105.292, "zeta": -89.957, "epsilon_zeta": -15.335, "bb_type": "--", "chi": -134.393, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.626, -0.984 ], "P_xyz": [ 0.981, 8.059, -1.703 ], "form": ".", "ssZp": 2.699, "Dp": 4.636, "splay_angle": 33.371, "splay_distance": 6.073, "splay_ratio": 0.290, "d22": 4.478, "d64": 5.646, "eta": -179.103, "theta": -86.344, "eta_prime": 176.036, "theta_prime": -93.838, "eta_base": 167.236, "theta_base": -84.203, "v0": 1.719, "v1": -22.227, "v2": 33.115, "v3": -33.051, "v4": 19.815, "amplitude": 34.423, "phase_angle": 15.841, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.027, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 193.642, 152.786, 84.551 ], "x_axis": [ 0.620, -0.738, 0.266 ], "y_axis": [ 0.493, 0.630, 0.600 ], "z_axis": [ -0.611, -0.241, 0.755 ], "quaternion": [ 0.867, 0.242, -0.253, -0.355 ] } }, { "index": 745, "index_chain": 745, "chain_name": "2", "nt_resnum": 898, "nt_name": "U", "nt_code": "U", "nt_id": "///2/898", "linked_nts": [ "///2/897", "///2/899" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": 89.137, "beta": -104.059, "gamma": -120.771, "delta": 82.389, "epsilon": -105.737, "zeta": -90.479, "epsilon_zeta": -15.258, "bb_type": "--", "chi": -157.195, "glyco_bond": "anti", "C5prime_xyz": [ -1.419, 8.749, 0.356 ], "P_xyz": [ -1.966, 10.634, -1.379 ], "form": ".", "ssZp": 3.976, "Dp": 4.680, "splay_angle": 42.461, "splay_distance": 6.662, "splay_ratio": 0.365, "d22": 3.861, "d64": 3.971, "eta": -161.290, "theta": -179.785, "eta_prime": -144.389, "theta_prime": -158.321, "eta_base": -113.057, "theta_base": -104.902, "v0": 1.470, "v1": -22.996, "v2": 34.521, "v3": -34.656, "v4": 20.956, "amplitude": 35.974, "phase_angle": 16.338, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 195.519, 149.036, 88.944 ], "x_axis": [ 0.805, -0.316, 0.502 ], "y_axis": [ 0.067, 0.889, 0.453 ], "z_axis": [ -0.589, -0.331, 0.737 ], "quaternion": [ 0.926, 0.212, -0.294, -0.103 ] } }, { "index": 746, "index_chain": 746, "chain_name": "2", "nt_resnum": 899, "nt_name": "U", "nt_code": "U", "nt_id": "///2/899", "linked_nts": [ "///2/898", "///2/900" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop", "alpha": -41.947, "beta": 144.971, "gamma": 50.181, "delta": 81.760, "epsilon": -116.266, "zeta": -66.817, "epsilon_zeta": -49.449, "bb_type": "--", "chi": -164.015, "glyco_bond": "anti", "C5prime_xyz": [ -1.225, 8.615, 0.785 ], "P_xyz": [ 1.382, 8.528, 0.515 ], "form": ".", "ssZp": 4.414, "Dp": 4.784, "splay_angle": 33.083, "splay_distance": 5.357, "splay_ratio": 0.286, "d22": 3.794, "d64": 3.694, "eta": 166.829, "theta": -106.863, "eta_prime": -168.572, "theta_prime": -107.834, "eta_base": -110.434, "theta_base": -74.650, "v0": 4.763, "v1": -26.296, "v2": 36.718, "v3": -34.965, "v4": 19.056, "amplitude": 37.468, "phase_angle": 11.485, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.644, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 197.148, 149.285, 95.399 ], "x_axis": [ 0.621, 0.750, 0.225 ], "y_axis": [ -0.720, 0.660, -0.212 ], "z_axis": [ -0.308, -0.031, 0.951 ], "quaternion": [ 0.899, -0.050, -0.148, 0.409 ] } }, { "index": 747, "index_chain": 747, "chain_name": "2", "nt_resnum": 900, "nt_name": "C", "nt_code": "C", "nt_id": "///2/900", "linked_nts": [ "///2/899", "///2/901" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -65.467, "beta": -177.186, "gamma": 45.367, "delta": 80.018, "epsilon": -108.589, "zeta": -110.841, "epsilon_zeta": 2.252, "bb_type": "--", "chi": -148.624, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.849, -0.173 ], "P_xyz": [ 1.069, 9.571, 0.060 ], "form": ".", "ssZp": 3.604, "Dp": 4.695, "splay_angle": 35.602, "splay_distance": 5.846, "splay_ratio": 0.306, "d22": null, "d64": null, "eta": 165.242, "theta": -102.584, "eta_prime": -175.642, "theta_prime": -101.381, "eta_base": -125.525, "theta_base": -57.767, "v0": 0.120, "v1": -22.555, "v2": 35.128, "v3": -36.056, "v4": 22.662, "amplitude": 37.029, "phase_angle": 18.438, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.433, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 198.296, 152.939, 99.144 ], "x_axis": [ -0.068, 0.840, -0.539 ], "y_axis": [ -0.980, -0.157, -0.122 ], "z_axis": [ -0.187, 0.519, 0.834 ], "quaternion": [ 0.634, -0.253, 0.138, 0.717 ] } }, { "index": 748, "index_chain": 748, "chain_name": "2", "nt_resnum": 901, "nt_name": "G", "nt_code": "G", "nt_id": "///2/901", "linked_nts": [ "///2/900", "///2/902" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor", "alpha": 136.655, "beta": -114.677, "gamma": 176.966, "delta": 81.035, "epsilon": -167.654, "zeta": -86.931, "epsilon_zeta": -80.724, "bb_type": "BI", "chi": -147.653, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.793, -0.245 ], "P_xyz": [ -0.503, 8.927, -2.698 ], "form": ".", "ssZp": 4.102, "Dp": 4.503, "splay_angle": 35.804, "splay_distance": 5.455, "splay_ratio": 0.308, "d22": null, "d64": null, "eta": 147.894, "theta": 177.040, "eta_prime": -170.396, "theta_prime": 166.359, "eta_base": -109.923, "theta_base": 179.689, "v0": 2.186, "v1": -24.426, "v2": 36.107, "v3": -35.831, "v4": 21.218, "amplitude": 37.437, "phase_angle": 15.317, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 194.933, 157.514, 97.751 ], "x_axis": [ -0.688, 0.257, -0.679 ], "y_axis": [ -0.719, -0.367, 0.590 ], "z_axis": [ -0.097, 0.894, 0.437 ], "quaternion": [ 0.309, -0.246, 0.470, 0.789 ] } }, { "index": 749, "index_chain": 749, "chain_name": "2", "nt_resnum": 902, "nt_name": "G", "nt_code": "G", "nt_id": "///2/902", "linked_nts": [ "///2/901", "///2/903" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop", "alpha": -76.202, "beta": -168.704, "gamma": 48.841, "delta": 83.561, "epsilon": -119.236, "zeta": -107.154, "epsilon_zeta": -12.082, "bb_type": "--", "chi": 170.205, "glyco_bond": "--", "C5prime_xyz": [ -1.373, 8.081, 2.200 ], "P_xyz": [ 0.800, 7.760, 3.642 ], "form": ".", "ssZp": 4.755, "Dp": 4.769, "splay_angle": 29.540, "splay_distance": 4.392, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 176.037, "theta": -154.396, "eta_prime": 169.094, "theta_prime": -142.787, "eta_base": -177.616, "theta_base": -125.787, "v0": 5.953, "v1": -26.382, "v2": 35.672, "v3": -33.254, "v4": 17.252, "amplitude": 36.157, "phase_angle": 9.398, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.582, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 196.109, 162.005, 100.614 ], "x_axis": [ -0.445, -0.517, -0.732 ], "y_axis": [ -0.239, -0.719, 0.653 ], "z_axis": [ -0.863, 0.465, 0.196 ], "quaternion": [ -0.090, -0.519, 0.364, 0.768 ] } }, { "index": 750, "index_chain": 750, "chain_name": "2", "nt_resnum": 903, "nt_name": "A", "nt_code": "A", "nt_id": "///2/903", "linked_nts": [ "///2/902", "///2/904" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -59.988, "beta": 161.044, "gamma": 57.757, "delta": 84.642, "epsilon": -173.793, "zeta": -90.794, "epsilon_zeta": -82.999, "bb_type": "BI", "chi": -163.471, "glyco_bond": "anti", "C5prime_xyz": [ -1.066, 8.568, 0.775 ], "P_xyz": [ 1.559, 8.533, 0.675 ], "form": "A", "ssZp": 4.384, "Dp": 4.432, "splay_angle": 25.315, "splay_distance": 3.856, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 170.013, "theta": -139.215, "eta_prime": -178.553, "theta_prime": -145.227, "eta_base": -156.521, "theta_base": -128.006, "v0": 5.659, "v1": -25.622, "v2": 34.725, "v3": -32.461, "v4": 16.931, "amplitude": 35.220, "phase_angle": 9.618, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.162, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 194.064, 165.890, 100.730 ], "x_axis": [ -0.501, -0.791, -0.351 ], "y_axis": [ -0.058, -0.374, 0.925 ], "z_axis": [ -0.863, 0.484, 0.142 ], "quaternion": [ -0.258, -0.428, 0.496, 0.710 ] } }, { "index": 751, "index_chain": 751, "chain_name": "2", "nt_resnum": 904, "nt_name": "A", "nt_code": "A", "nt_id": "///2/904", "linked_nts": [ "///2/903", "///2/905" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -176.593, "beta": -136.008, "gamma": 140.560, "delta": 83.914, "epsilon": -115.638, "zeta": -101.201, "epsilon_zeta": -14.436, "bb_type": "--", "chi": -174.278, "glyco_bond": "anti", "C5prime_xyz": [ -1.327, 8.473, 1.384 ], "P_xyz": [ 1.097, 8.797, 0.436 ], "form": ".", "ssZp": 4.593, "Dp": 4.708, "splay_angle": 31.614, "splay_distance": 4.895, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 170.431, "theta": -144.427, "eta_prime": -177.496, "theta_prime": -142.907, "eta_base": -144.821, "theta_base": -120.151, "v0": 3.511, "v1": -23.971, "v2": 34.121, "v3": -33.075, "v4": 18.688, "amplitude": 35.022, "phase_angle": 13.019, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 191.031, 168.121, 99.896 ], "x_axis": [ -0.460, -0.874, 0.160 ], "y_axis": [ 0.165, 0.093, 0.982 ], "z_axis": [ -0.873, 0.478, 0.101 ], "quaternion": [ -0.429, -0.294, 0.602, 0.606 ] } }, { "index": 752, "index_chain": 752, "chain_name": "2", "nt_resnum": 905, "nt_name": "C", "nt_code": "C", "nt_id": "///2/905", "linked_nts": [ "///2/904", "///2/906" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,non-stack,canonical,non-pair-contact,helix,stem", "alpha": -53.886, "beta": 157.321, "gamma": 60.068, "delta": 83.041, "epsilon": -167.265, "zeta": 10.127, "epsilon_zeta": 182.608, "bb_type": "--", "chi": -145.733, "glyco_bond": "anti", "C5prime_xyz": [ -1.199, 8.760, -0.307 ], "P_xyz": [ 1.335, 8.768, -0.999 ], "form": ".", "ssZp": 4.014, "Dp": 4.467, "splay_angle": 30.617, "splay_distance": 5.625, "splay_ratio": 0.277, "d22": 5.021, "d64": 6.267, "eta": 171.738, "theta": -90.760, "eta_prime": -171.166, "theta_prime": -113.238, "eta_base": -135.490, "theta_base": -107.806, "v0": 3.023, "v1": -23.943, "v2": 34.597, "v3": -33.822, "v4": 19.462, "amplitude": 35.638, "phase_angle": 13.883, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.202, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 186.328, 169.466, 99.746 ], "x_axis": [ -0.297, -0.633, 0.715 ], "y_axis": [ 0.323, 0.638, 0.699 ], "z_axis": [ -0.899, 0.439, 0.015 ], "quaternion": [ 0.582, 0.112, -0.693, -0.410 ] } }, { "index": 753, "index_chain": 753, "chain_name": "2", "nt_resnum": 906, "nt_name": "U", "nt_code": "U", "nt_id": "///2/906", "linked_nts": [ "///2/905", "///2/907" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem", "alpha": -163.208, "beta": 103.523, "gamma": 177.702, "delta": 81.971, "epsilon": -151.318, "zeta": -100.673, "epsilon_zeta": -50.645, "bb_type": "BI", "chi": -161.570, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.702, 0.622 ], "P_xyz": [ -1.964, 10.830, -0.782 ], "form": ".", "ssZp": 4.449, "Dp": 4.605, "splay_angle": 20.595, "splay_distance": 3.137, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": -175.160, "theta": 149.638, "eta_prime": -163.202, "theta_prime": 173.733, "eta_base": -133.861, "theta_base": -166.082, "v0": 2.492, "v1": -24.015, "v2": 35.143, "v3": -34.702, "v4": 20.345, "amplitude": 36.346, "phase_angle": 14.782, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 181.027, 168.341, 101.257 ], "x_axis": [ -0.162, -0.336, 0.928 ], "y_axis": [ 0.368, 0.852, 0.373 ], "z_axis": [ -0.916, 0.402, -0.014 ], "quaternion": [ 0.647, -0.011, -0.712, -0.272 ] } }, { "index": 754, "index_chain": 754, "chain_name": "2", "nt_resnum": 907, "nt_name": "G", "nt_code": "G", "nt_id": "///2/907", "linked_nts": [ "///2/906", "///2/908" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -142.058, "beta": -129.590, "gamma": 81.246, "delta": 82.773, "epsilon": -152.458, "zeta": -87.326, "epsilon_zeta": -65.132, "bb_type": "BI", "chi": -157.962, "glyco_bond": "anti", "C5prime_xyz": [ -0.981, 8.660, 0.409 ], "P_xyz": [ 1.571, 8.164, 0.792 ], "form": ".", "ssZp": 4.413, "Dp": 4.662, "splay_angle": 26.438, "splay_distance": 4.137, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 145.759, "theta": -151.423, "eta_prime": 149.126, "theta_prime": -153.475, "eta_base": 168.999, "theta_base": -155.091, "v0": 6.473, "v1": -27.467, "v2": 36.923, "v3": -34.190, "v4": 17.512, "amplitude": 37.371, "phase_angle": 8.884, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 178.016, 169.111, 100.833 ], "x_axis": [ 0.762, -0.018, 0.647 ], "y_axis": [ 0.164, 0.972, -0.167 ], "z_axis": [ -0.626, 0.234, 0.744 ], "quaternion": [ 0.933, -0.107, -0.341, -0.049 ] } }, { "index": 755, "index_chain": 755, "chain_name": "2", "nt_resnum": 908, "nt_name": "A", "nt_code": "A", "nt_id": "///2/908", "linked_nts": [ "///2/907", "///2/909" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.654, "beta": 161.385, "gamma": 59.823, "delta": 81.881, "epsilon": -133.727, "zeta": -98.458, "epsilon_zeta": -35.270, "bb_type": "--", "chi": -166.847, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.677, 0.932 ], "P_xyz": [ 1.098, 9.058, 0.986 ], "form": "A", "ssZp": 4.496, "Dp": 4.652, "splay_angle": 23.843, "splay_distance": 3.694, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 175.691, "theta": -154.881, "eta_prime": -178.177, "theta_prime": -153.094, "eta_base": -168.267, "theta_base": -128.227, "v0": 1.061, "v1": -22.840, "v2": 34.664, "v3": -35.027, "v4": 21.436, "amplitude": 36.243, "phase_angle": 16.973, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.743, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 174.431, 168.208, 102.691 ], "x_axis": [ 0.875, 0.171, 0.454 ], "y_axis": [ -0.033, 0.955, -0.296 ], "z_axis": [ -0.484, 0.244, 0.841 ], "quaternion": [ 0.958, -0.141, -0.245, 0.053 ] } }, { "index": 756, "index_chain": 756, "chain_name": "2", "nt_resnum": 909, "nt_name": "G", "nt_code": "G", "nt_id": "///2/909", "linked_nts": [ "///2/908", "///2/910" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -55.496, "beta": 147.456, "gamma": 59.634, "delta": 83.208, "epsilon": -144.359, "zeta": -83.023, "epsilon_zeta": -61.336, "bb_type": "BI", "chi": -165.123, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.678, 0.849 ], "P_xyz": [ 1.320, 8.712, 0.481 ], "form": "A", "ssZp": 4.511, "Dp": 4.645, "splay_angle": 22.334, "splay_distance": 3.476, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 167.936, "theta": -143.816, "eta_prime": -179.085, "theta_prime": -146.799, "eta_base": -141.727, "theta_base": -122.310, "v0": 3.525, "v1": -24.521, "v2": 34.993, "v3": -33.944, "v4": 19.207, "amplitude": 35.932, "phase_angle": 13.121, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.365, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 172.822, 168.151, 106.016 ], "x_axis": [ 0.747, 0.627, 0.222 ], "y_axis": [ -0.499, 0.748, -0.437 ], "z_axis": [ -0.440, 0.216, 0.872 ], "quaternion": [ 0.917, -0.178, -0.180, 0.307 ] } }, { "index": 757, "index_chain": 757, "chain_name": "2", "nt_resnum": 910, "nt_name": "G", "nt_code": "G", "nt_id": "///2/910", "linked_nts": [ "///2/909", "///2/911" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -57.576, "beta": 156.706, "gamma": 60.445, "delta": 84.481, "epsilon": -131.163, "zeta": -95.944, "epsilon_zeta": -35.219, "bb_type": "--", "chi": -164.907, "glyco_bond": "anti", "C5prime_xyz": [ -1.349, 8.716, 0.846 ], "P_xyz": [ 1.270, 8.890, 0.772 ], "form": ".", "ssZp": 4.420, "Dp": 4.626, "splay_angle": 22.162, "splay_distance": 3.482, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 174.605, "theta": -145.068, "eta_prime": -171.440, "theta_prime": -143.436, "eta_base": -130.539, "theta_base": -105.216, "v0": 1.845, "v1": -22.425, "v2": 33.275, "v3": -33.122, "v4": 19.766, "amplitude": 34.550, "phase_angle": 15.613, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.745, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 172.413, 168.506, 109.449 ], "x_axis": [ 0.362, 0.930, -0.064 ], "y_axis": [ -0.848, 0.300, -0.437 ], "z_axis": [ -0.387, 0.213, 0.897 ], "quaternion": [ 0.800, -0.203, -0.101, 0.556 ] } }, { "index": 758, "index_chain": 758, "chain_name": "2", "nt_resnum": 911, "nt_name": "C", "nt_code": "C", "nt_id": "///2/911", "linked_nts": [ "///2/910", "///2/912" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -48.079, "beta": 142.529, "gamma": 56.688, "delta": 83.107, "epsilon": -131.369, "zeta": -69.088, "epsilon_zeta": -62.281, "bb_type": "BI", "chi": -152.863, "glyco_bond": "anti", "C5prime_xyz": [ -1.205, 8.744, 0.116 ], "P_xyz": [ 1.316, 8.568, -0.595 ], "form": ".", "ssZp": 4.109, "Dp": 4.710, "splay_angle": 28.523, "splay_distance": 4.704, "splay_ratio": 0.247, "d22": 4.347, "d64": 4.048, "eta": 169.902, "theta": -123.611, "eta_prime": -173.300, "theta_prime": -120.345, "eta_base": -120.754, "theta_base": -115.628, "v0": 3.992, "v1": -24.938, "v2": 35.273, "v3": -33.948, "v4": 18.911, "amplitude": 36.120, "phase_angle": 12.431, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.308, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 171.565, 170.224, 112.357 ], "x_axis": [ -0.281, 0.943, -0.181 ], "y_axis": [ -0.942, -0.307, -0.138 ], "z_axis": [ -0.186, 0.132, 0.974 ], "quaternion": [ 0.589, -0.115, -0.002, 0.800 ] } }, { "index": 759, "index_chain": 759, "chain_name": "2", "nt_resnum": 912, "nt_name": "C", "nt_code": "C", "nt_id": "///2/912", "linked_nts": [ "///2/911", "///2/913" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,splayed-apart", "alpha": -62.438, "beta": -154.346, "gamma": 43.208, "delta": 142.911, "epsilon": -110.773, "zeta": -67.138, "epsilon_zeta": -43.635, "bb_type": "--", "chi": -110.231, "glyco_bond": "anti", "C5prime_xyz": [ -1.708, 8.347, -1.747 ], "P_xyz": [ 0.453, 9.647, -1.019 ], "form": ".", "ssZp": 1.114, "Dp": 1.444, "splay_angle": 103.660, "splay_distance": 15.571, "splay_ratio": 0.787, "d22": null, "d64": null, "eta": -168.144, "theta": -33.876, "eta_prime": -148.585, "theta_prime": -88.677, "eta_base": -137.647, "theta_base": -127.654, "v0": -19.563, "v1": 32.351, "v2": -32.159, "v3": 21.665, "v4": -1.495, "amplitude": 33.489, "phase_angle": 163.800, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.717, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 170.827, 172.902, 116.153 ], "x_axis": [ -0.339, 0.350, -0.873 ], "y_axis": [ -0.766, -0.641, 0.040 ], "z_axis": [ -0.546, 0.683, 0.486 ], "quaternion": [ 0.355, -0.452, 0.230, 0.785 ] } }, { "index": 760, "index_chain": 760, "chain_name": "2", "nt_resnum": 913, "nt_name": "A", "nt_code": "A", "nt_id": "///2/913", "linked_nts": [ "///2/912", "///2/914" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 98.309, "beta": -168.673, "gamma": 53.137, "delta": 147.926, "epsilon": -143.498, "zeta": -39.976, "epsilon_zeta": -103.522, "bb_type": "BI", "chi": -151.532, "glyco_bond": "anti", "C5prime_xyz": [ -1.789, 8.650, 0.538 ], "P_xyz": [ -0.005, 9.008, 2.441 ], "form": ".", "ssZp": 1.468, "Dp": 1.754, "splay_angle": 106.391, "splay_distance": 16.783, "splay_ratio": 0.803, "d22": null, "d64": null, "eta": -41.780, "theta": -20.666, "eta_prime": 28.022, "theta_prime": -61.115, "eta_base": 57.668, "theta_base": -95.102, "v0": -19.898, "v1": 34.812, "v2": -35.586, "v3": 25.058, "v4": -3.443, "amplitude": 36.590, "phase_angle": 166.542, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 161.530, 171.211, 128.529 ], "x_axis": [ 0.366, -0.647, 0.669 ], "y_axis": [ 0.146, -0.670, -0.728 ], "z_axis": [ 0.919, 0.364, -0.150 ], "quaternion": [ -0.369, 0.739, -0.169, 0.537 ] } }, { "index": 761, "index_chain": 761, "chain_name": "2", "nt_resnum": 914, "nt_name": "U", "nt_code": "U", "nt_id": "///2/914", "linked_nts": [ "///2/913", "///2/915" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop,cap-donor,splayed-apart", "alpha": 166.419, "beta": -157.396, "gamma": -90.254, "delta": 81.733, "epsilon": -152.710, "zeta": -78.452, "epsilon_zeta": -74.257, "bb_type": "BI", "chi": -158.362, "glyco_bond": "anti", "C5prime_xyz": [ -1.379, 8.721, 0.427 ], "P_xyz": [ -1.215, 11.336, 0.409 ], "form": ".", "ssZp": 4.395, "Dp": 4.608, "splay_angle": 32.505, "splay_distance": 4.992, "splay_ratio": 0.330, "d22": null, "d64": null, "eta": -87.743, "theta": 156.328, "eta_prime": -50.097, "theta_prime": 172.404, "eta_base": -6.310, "theta_base": -113.046, "v0": 2.718, "v1": -24.378, "v2": 35.508, "v3": -34.921, "v4": 20.327, "amplitude": 36.667, "phase_angle": 14.446, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 170.043, 178.137, 115.831 ], "x_axis": [ -0.569, 0.614, -0.547 ], "y_axis": [ -0.800, -0.568, 0.194 ], "z_axis": [ -0.192, 0.547, 0.815 ], "quaternion": [ 0.411, -0.215, 0.216, 0.859 ] } }, { "index": 762, "index_chain": 762, "chain_name": "2", "nt_resnum": 915, "nt_name": "G", "nt_code": "G", "nt_id": "///2/915", "linked_nts": [ "///2/914", "///2/916" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate", "alpha": -61.674, "beta": -175.236, "gamma": 50.930, "delta": 78.118, "epsilon": -149.456, "zeta": -69.811, "epsilon_zeta": -79.645, "bb_type": "BI", "chi": 36.938, "glyco_bond": "syn", "C5prime_xyz": [ -5.651, 3.857, 0.465 ], "P_xyz": [ -6.017, 1.265, 0.513 ], "form": ".", "ssZp": -3.862, "Dp": 4.525, "splay_angle": 53.780, "splay_distance": 7.938, "splay_ratio": 0.458, "d22": null, "d64": null, "eta": 177.443, "theta": -154.414, "eta_prime": -178.664, "theta_prime": -140.277, "eta_base": -113.593, "theta_base": -171.226, "v0": -4.407, "v1": -19.287, "v2": 34.174, "v3": -37.690, "v4": 26.544, "amplitude": 37.749, "phase_angle": 25.138, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.902, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 166.587, 179.677, 119.088 ], "x_axis": [ 0.461, 0.726, -0.510 ], "y_axis": [ 0.861, -0.227, 0.456 ], "z_axis": [ 0.215, -0.649, -0.729 ], "quaternion": [ 0.355, 0.777, 0.510, -0.095 ] } }, { "index": 763, "index_chain": 763, "chain_name": "2", "nt_resnum": 916, "nt_name": "A", "nt_code": "A", "nt_id": "///2/916", "linked_nts": [ "///2/915", "///2/917" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -60.290, "beta": -142.611, "gamma": 59.693, "delta": 144.317, "epsilon": -126.635, "zeta": -58.096, "epsilon_zeta": -68.539, "bb_type": "--", "chi": -78.981, "glyco_bond": "anti", "C5prime_xyz": [ -2.947, 7.305, -2.807 ], "P_xyz": [ -0.784, 8.715, -3.298 ], "form": ".", "ssZp": 1.057, "Dp": 1.564, "splay_angle": 145.855, "splay_distance": 17.830, "splay_ratio": 0.956, "d22": null, "d64": null, "eta": -144.719, "theta": -17.149, "eta_prime": -130.948, "theta_prime": -73.092, "eta_base": -179.023, "theta_base": -169.599, "v0": -23.009, "v1": 36.067, "v2": -34.677, "v3": 22.285, "v4": 0.265, "amplitude": 36.708, "phase_angle": 160.852, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.868, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 169.272, 185.836, 123.315 ], "x_axis": [ -0.815, 0.047, -0.577 ], "y_axis": [ -0.438, -0.703, 0.561 ], "z_axis": [ -0.379, 0.710, 0.594 ], "quaternion": [ 0.138, -0.271, 0.360, 0.882 ] } }, { "index": 764, "index_chain": 764, "chain_name": "2", "nt_resnum": 917, "nt_name": "U", "nt_code": "U", "nt_id": "///2/917", "linked_nts": [ "///2/916", "///2/918" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,junction-loop,splayed-apart", "alpha": 107.096, "beta": 124.857, "gamma": 25.443, "delta": 83.295, "epsilon": -147.539, "zeta": -82.864, "epsilon_zeta": -64.675, "bb_type": "BI", "chi": -169.376, "glyco_bond": "anti", "C5prime_xyz": [ -1.396, 8.611, 1.117 ], "P_xyz": [ 1.057, 8.092, 1.897 ], "form": "A", "ssZp": 4.450, "Dp": 4.547, "splay_angle": 19.371, "splay_distance": 3.040, "splay_ratio": 0.169, "d22": 4.265, "d64": 3.980, "eta": -101.052, "theta": -138.313, "eta_prime": -36.680, "theta_prime": -133.308, "eta_base": 71.037, "theta_base": -115.267, "v0": 1.898, "v1": -22.770, "v2": 33.780, "v3": -33.675, "v4": 20.057, "amplitude": 35.075, "phase_angle": 15.618, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.006, "origin": [ 170.191, 180.232, 140.216 ], "x_axis": [ 0.971, 0.071, -0.228 ], "y_axis": [ -0.205, -0.242, -0.948 ], "z_axis": [ -0.122, 0.968, -0.221 ], "quaternion": [ 0.614, -0.780, 0.043, 0.112 ] } }, { "index": 765, "index_chain": 765, "chain_name": "2", "nt_resnum": 918, "nt_name": "U", "nt_code": "U", "nt_id": "///2/918", "linked_nts": [ "///2/917", "///2/919" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop", "alpha": -50.312, "beta": 159.048, "gamma": 68.455, "delta": 145.819, "epsilon": -127.410, "zeta": -88.346, "epsilon_zeta": -39.064, "bb_type": "--", "chi": -140.396, "glyco_bond": "anti", "C5prime_xyz": [ -1.933, 8.732, -0.149 ], "P_xyz": [ 0.579, 9.086, 0.520 ], "form": ".", "ssZp": 1.392, "Dp": 1.517, "splay_angle": 42.955, "splay_distance": 6.786, "splay_ratio": 0.373, "d22": null, "d64": null, "eta": -171.318, "theta": -89.192, "eta_prime": -136.699, "theta_prime": -102.680, "eta_base": -109.540, "theta_base": -47.616, "v0": -21.934, "v1": 35.621, "v2": -35.001, "v3": 23.216, "v4": -1.052, "amplitude": 36.634, "phase_angle": 162.828, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.672, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 170.415, 183.223, 140.708 ], "x_axis": [ 0.738, -0.156, -0.657 ], "y_axis": [ -0.674, -0.111, -0.730 ], "z_axis": [ 0.041, 0.981, -0.187 ], "quaternion": [ 0.600, -0.713, 0.291, 0.216 ] } }, { "index": 766, "index_chain": 766, "chain_name": "2", "nt_resnum": 919, "nt_name": "A", "nt_code": "A", "nt_id": "///2/919", "linked_nts": [ "///2/918", "///2/920" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-pair-contact,junction-loop,phosphate", "alpha": -69.095, "beta": 154.591, "gamma": 64.426, "delta": 146.663, "epsilon": -84.313, "zeta": 127.452, "epsilon_zeta": 148.235, "bb_type": "BII", "chi": -81.348, "glyco_bond": "--", "C5prime_xyz": [ -2.799, 7.370, -2.760 ], "P_xyz": [ -0.404, 7.466, -3.823 ], "form": ".", "ssZp": 0.190, "Dp": 0.508, "splay_angle": 78.693, "splay_distance": 13.430, "splay_ratio": 0.635, "d22": null, "d64": null, "eta": -175.590, "theta": 124.056, "eta_prime": -126.349, "theta_prime": 106.935, "eta_base": -76.311, "theta_base": 133.065, "v0": -21.663, "v1": 36.014, "v2": -35.827, "v3": 24.271, "v4": -1.851, "amplitude": 37.265, "phase_angle": 164.031, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.042, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 168.122, 186.836, 135.442 ], "x_axis": [ -0.364, -0.160, -0.918 ], "y_axis": [ -0.922, 0.205, 0.330 ], "z_axis": [ 0.135, 0.966, -0.222 ], "quaternion": [ 0.393, -0.404, 0.669, 0.484 ] } }, { "index": 767, "index_chain": 767, "chain_name": "2", "nt_resnum": 920, "nt_name": "A", "nt_code": "A", "nt_id": "///2/920", "linked_nts": [ "///2/919", "///2/921" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -58.178, "beta": -128.185, "gamma": -17.376, "delta": 147.522, "epsilon": -115.896, "zeta": -91.443, "epsilon_zeta": -24.453, "bb_type": "--", "chi": -159.254, "glyco_bond": "anti", "C5prime_xyz": [ -1.954, 8.575, 0.946 ], "P_xyz": [ -2.496, 10.367, 2.797 ], "form": ".", "ssZp": 1.163, "Dp": 1.320, "splay_angle": 107.123, "splay_distance": 15.376, "splay_ratio": 0.805, "d22": null, "d64": null, "eta": -135.092, "theta": -82.915, "eta_prime": -151.308, "theta_prime": -118.472, "eta_base": -146.056, "theta_base": -157.833, "v0": -20.883, "v1": 35.493, "v2": -35.726, "v3": 24.571, "v4": -2.498, "amplitude": 36.973, "phase_angle": 165.075, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 172.777, 188.715, 147.898 ], "x_axis": [ 0.602, 0.132, -0.788 ], "y_axis": [ -0.775, -0.143, -0.616 ], "z_axis": [ -0.194, 0.981, 0.016 ], "quaternion": [ 0.607, -0.657, 0.245, 0.373 ] } }, { "index": 768, "index_chain": 768, "chain_name": "2", "nt_resnum": 921, "nt_name": "G", "nt_code": "G", "nt_id": "///2/921", "linked_nts": [ "///2/920", "///2/922" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,junction-loop,splayed-apart", "alpha": 79.219, "beta": 171.627, "gamma": 56.426, "delta": 82.402, "epsilon": -139.269, "zeta": 145.085, "epsilon_zeta": 75.646, "bb_type": "--", "chi": -159.734, "glyco_bond": "anti", "C5prime_xyz": [ -1.433, 8.789, 0.510 ], "P_xyz": [ 1.150, 9.237, 0.653 ], "form": ".", "ssZp": 4.350, "Dp": 4.628, "splay_angle": 160.164, "splay_distance": 19.861, "splay_ratio": 0.985, "d22": null, "d64": null, "eta": -61.880, "theta": 105.731, "eta_prime": -10.297, "theta_prime": 79.837, "eta_base": 21.548, "theta_base": 4.901, "v0": 0.850, "v1": -22.307, "v2": 34.024, "v3": -34.526, "v4": 21.259, "amplitude": 35.637, "phase_angle": 17.307, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.291, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 160.821, 188.319, 157.558 ], "x_axis": [ -0.286, -0.945, -0.161 ], "y_axis": [ 0.210, 0.102, -0.972 ], "z_axis": [ 0.935, -0.312, 0.170 ], "quaternion": [ -0.496, 0.333, -0.552, 0.582 ] } }, { "index": 769, "index_chain": 769, "chain_name": "2", "nt_resnum": 922, "nt_name": "A", "nt_code": "A", "nt_id": "///2/922", "linked_nts": [ "///2/921", "///2/923" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,bulge,junction-loop,cap-donor,phosphate,splayed-apart", "alpha": 34.394, "beta": 142.715, "gamma": 165.951, "delta": 81.336, "epsilon": -154.321, "zeta": -62.703, "epsilon_zeta": -91.618, "bb_type": "BI", "chi": -162.694, "glyco_bond": "anti", "C5prime_xyz": [ -1.622, 8.795, 0.662 ], "P_xyz": [ -1.144, 10.864, -0.885 ], "form": ".", "ssZp": 4.370, "Dp": 4.493, "splay_angle": 33.884, "splay_distance": 5.240, "splay_ratio": 0.291, "d22": null, "d64": null, "eta": 43.815, "theta": 176.813, "eta_prime": 42.412, "theta_prime": -169.286, "eta_base": 115.102, "theta_base": -122.971, "v0": -1.562, "v1": -20.714, "v2": 33.754, "v3": -35.552, "v4": 23.409, "amplitude": 36.147, "phase_angle": 20.968, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.008, "origin": [ 172.355, 191.752, 141.758 ], "x_axis": [ -0.722, -0.418, -0.551 ], "y_axis": [ -0.572, -0.088, 0.815 ], "z_axis": [ -0.389, 0.904, -0.176 ], "quaternion": [ 0.060, -0.368, 0.673, 0.639 ] } }, { "index": 770, "index_chain": 770, "chain_name": "2", "nt_resnum": 923, "nt_name": "G", "nt_code": "G", "nt_id": "///2/923", "linked_nts": [ "///2/922", "///2/924" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -69.287, "beta": 167.123, "gamma": 64.984, "delta": 80.335, "epsilon": -140.133, "zeta": -82.719, "epsilon_zeta": -57.414, "bb_type": "BI", "chi": -175.541, "glyco_bond": "anti", "C5prime_xyz": [ -1.287, 8.505, 1.422 ], "P_xyz": [ 1.327, 8.783, 1.451 ], "form": "A", "ssZp": 4.740, "Dp": 4.736, "splay_angle": 24.360, "splay_distance": 3.863, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 170.802, "theta": -146.995, "eta_prime": -168.179, "theta_prime": -147.222, "eta_base": -107.916, "theta_base": -132.771, "v0": 4.930, "v1": -26.985, "v2": 37.683, "v3": -35.808, "v4": 19.492, "amplitude": 38.441, "phase_angle": 11.400, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.733, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 168.854, 195.099, 139.758 ], "x_axis": [ -0.929, -0.294, 0.224 ], "y_axis": [ 0.219, 0.049, 0.974 ], "z_axis": [ -0.297, 0.955, 0.018 ], "quaternion": [ -0.186, -0.027, 0.700, 0.689 ] } }, { "index": 771, "index_chain": 771, "chain_name": "2", "nt_resnum": 924, "nt_name": "G", "nt_code": "G", "nt_id": "///2/924", "linked_nts": [ "///2/923", "///2/925" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -55.099, "beta": 170.450, "gamma": 47.045, "delta": 79.578, "epsilon": -143.883, "zeta": -70.145, "epsilon_zeta": -73.737, "bb_type": "BI", "chi": -173.073, "glyco_bond": "anti", "C5prime_xyz": [ -1.600, 8.642, 1.268 ], "P_xyz": [ 0.873, 9.111, 1.979 ], "form": "A", "ssZp": 4.629, "Dp": 4.657, "splay_angle": 27.248, "splay_distance": 4.202, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 169.272, "theta": -139.755, "eta_prime": 178.686, "theta_prime": -136.029, "eta_base": -152.755, "theta_base": -93.422, "v0": 1.156, "v1": -23.992, "v2": 36.424, "v3": -36.753, "v4": 22.452, "amplitude": 38.068, "phase_angle": 16.899, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.799, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 167.262, 197.902, 137.629 ], "x_axis": [ -0.631, -0.448, 0.634 ], "y_axis": [ 0.635, 0.172, 0.753 ], "z_axis": [ -0.446, 0.877, 0.176 ], "quaternion": [ -0.423, 0.073, 0.638, 0.639 ] } }, { "index": 772, "index_chain": 772, "chain_name": "2", "nt_resnum": 925, "nt_name": "G", "nt_code": "G", "nt_id": "///2/925", "linked_nts": [ "///2/924", "///2/926" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -60.534, "beta": 166.519, "gamma": 55.352, "delta": 80.440, "epsilon": -150.792, "zeta": -78.990, "epsilon_zeta": -71.801, "bb_type": "BI", "chi": -174.546, "glyco_bond": "anti", "C5prime_xyz": [ -1.450, 8.557, 1.365 ], "P_xyz": [ 1.131, 8.856, 1.727 ], "form": "A", "ssZp": 4.640, "Dp": 4.645, "splay_angle": 29.166, "splay_distance": 4.458, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": 166.035, "theta": -150.851, "eta_prime": -174.266, "theta_prime": -150.364, "eta_base": -111.588, "theta_base": -132.171, "v0": 3.237, "v1": -25.438, "v2": 36.804, "v3": -35.907, "v4": 20.597, "amplitude": 37.899, "phase_angle": 13.803, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.953, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 163.898, 199.920, 139.134 ], "x_axis": [ 0.013, -0.220, 0.975 ], "y_axis": [ 0.923, 0.378, 0.073 ], "z_axis": [ -0.385, 0.899, 0.208 ], "quaternion": [ 0.632, -0.327, -0.538, -0.452 ] } }, { "index": 773, "index_chain": 773, "chain_name": "2", "nt_resnum": 926, "nt_name": "A", "nt_code": "A", "nt_id": "///2/926", "linked_nts": [ "///2/925", "///2/927" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.305, "beta": 170.637, "gamma": 53.716, "delta": 79.749, "epsilon": -139.274, "zeta": -72.726, "epsilon_zeta": -66.549, "bb_type": "BI", "chi": -178.791, "glyco_bond": "anti", "C5prime_xyz": [ -1.545, 8.424, 1.597 ], "P_xyz": [ 0.976, 8.744, 2.230 ], "form": "A", "ssZp": 4.711, "Dp": 4.712, "splay_angle": 26.605, "splay_distance": 4.216, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 177.069, "theta": -137.832, "eta_prime": -173.402, "theta_prime": -134.651, "eta_base": -142.395, "theta_base": -102.895, "v0": 2.976, "v1": -25.433, "v2": 37.041, "v3": -36.340, "v4": 21.022, "amplitude": 38.216, "phase_angle": 14.250, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.885, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 160.362, 202.599, 139.580 ], "x_axis": [ 0.438, -0.055, 0.897 ], "y_axis": [ 0.868, 0.288, -0.406 ], "z_axis": [ -0.236, 0.956, 0.174 ], "quaternion": [ 0.689, -0.494, -0.411, -0.335 ] } }, { "index": 774, "index_chain": 774, "chain_name": "2", "nt_resnum": 927, "nt_name": "C", "nt_code": "C", "nt_id": "///2/927", "linked_nts": [ "///2/926", "///2/928" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -56.761, "beta": 171.607, "gamma": 54.066, "delta": 80.183, "epsilon": -144.188, "zeta": -78.213, "epsilon_zeta": -65.975, "bb_type": "BI", "chi": -168.059, "glyco_bond": "anti", "C5prime_xyz": [ -1.508, 8.750, 0.986 ], "P_xyz": [ 1.021, 9.246, 1.452 ], "form": ".", "ssZp": 4.540, "Dp": 4.616, "splay_angle": 15.488, "splay_distance": 2.460, "splay_ratio": 0.136, "d22": null, "d64": null, "eta": 172.984, "theta": -147.818, "eta_prime": -170.929, "theta_prime": -146.346, "eta_base": -123.205, "theta_base": -126.968, "v0": -0.098, "v1": -22.488, "v2": 35.195, "v3": -36.235, "v4": 22.909, "amplitude": 37.166, "phase_angle": 18.743, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.907, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 158.887, 205.317, 142.446 ], "x_axis": [ 0.895, 0.128, 0.427 ], "y_axis": [ 0.390, 0.239, -0.889 ], "z_axis": [ -0.216, 0.963, 0.164 ], "quaternion": [ 0.758, -0.611, -0.212, -0.087 ] } }, { "index": 775, "index_chain": 775, "chain_name": "2", "nt_resnum": 928, "nt_name": "G", "nt_code": "G", "nt_id": "///2/928", "linked_nts": [ "///2/927", "///2/929" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -74.728, "beta": -178.663, "gamma": 47.897, "delta": 84.226, "epsilon": -155.795, "zeta": -85.097, "epsilon_zeta": -70.697, "bb_type": "BI", "chi": -149.553, "glyco_bond": "anti", "C5prime_xyz": [ -1.145, 8.748, -0.046 ], "P_xyz": [ 1.435, 9.095, 0.285 ], "form": "A", "ssZp": 4.094, "Dp": 4.534, "splay_angle": 21.822, "splay_distance": 3.466, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 158.715, "theta": -159.137, "eta_prime": 168.772, "theta_prime": -157.462, "eta_base": -160.161, "theta_base": -143.172, "v0": 3.617, "v1": -23.929, "v2": 34.003, "v3": -32.876, "v4": 18.490, "amplitude": 34.873, "phase_angle": 12.823, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.848, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 158.174, 207.092, 143.993 ], "x_axis": [ 0.971, -0.028, -0.237 ], "y_axis": [ -0.206, 0.398, -0.894 ], "z_axis": [ 0.119, 0.917, 0.381 ], "quaternion": [ 0.829, -0.546, 0.107, 0.054 ] } }, { "index": 776, "index_chain": 776, "chain_name": "2", "nt_resnum": 929, "nt_name": "G", "nt_code": "G", "nt_id": "///2/929", "linked_nts": [ "///2/928", "///2/930" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -57.500, "beta": 165.108, "gamma": 52.713, "delta": 84.691, "epsilon": -149.564, "zeta": -39.716, "epsilon_zeta": -109.848, "bb_type": "BI", "chi": -148.653, "glyco_bond": "anti", "C5prime_xyz": [ -1.161, 8.742, -0.098 ], "P_xyz": [ 1.459, 8.854, -0.252 ], "form": ".", "ssZp": 4.039, "Dp": 4.573, "splay_angle": 23.265, "splay_distance": 4.148, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 171.679, "theta": -120.408, "eta_prime": -178.806, "theta_prime": -132.704, "eta_base": -156.371, "theta_base": -125.700, "v0": 3.839, "v1": -23.923, "v2": 33.804, "v3": -32.537, "v4": 18.163, "amplitude": 34.616, "phase_angle": 12.434, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.793, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 158.118, 209.808, 146.145 ], "x_axis": [ 0.805, 0.070, -0.589 ], "y_axis": [ -0.541, 0.493, -0.682 ], "z_axis": [ 0.242, 0.867, 0.435 ], "quaternion": [ 0.827, -0.468, 0.251, 0.185 ] } }, { "index": 777, "index_chain": 777, "chain_name": "2", "nt_resnum": 930, "nt_name": "C", "nt_code": "C", "nt_id": "///2/930", "linked_nts": [ "///2/929", "///2/931" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -135.427, "beta": 128.600, "gamma": 146.736, "delta": 82.794, "epsilon": -132.175, "zeta": -73.944, "epsilon_zeta": -58.231, "bb_type": "BI", "chi": -170.711, "glyco_bond": "anti", "C5prime_xyz": [ -1.303, 8.634, 1.173 ], "P_xyz": [ -0.353, 10.463, -0.445 ], "form": ".", "ssZp": 4.549, "Dp": 4.655, "splay_angle": 29.958, "splay_distance": 4.701, "splay_ratio": 0.259, "d22": 4.393, "d64": 4.460, "eta": 175.330, "theta": -169.099, "eta_prime": -173.185, "theta_prime": -158.275, "eta_base": -146.427, "theta_base": -113.392, "v0": 1.961, "v1": -23.054, "v2": 34.186, "v3": -34.027, "v4": 20.252, "amplitude": 35.483, "phase_angle": 15.544, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 160.804, 212.111, 148.310 ], "x_axis": [ 0.575, 0.162, -0.802 ], "y_axis": [ -0.742, 0.517, -0.427 ], "z_axis": [ 0.346, 0.841, 0.417 ], "quaternion": [ 0.792, -0.400, 0.362, 0.285 ] } }, { "index": 778, "index_chain": 778, "chain_name": "2", "nt_resnum": 931, "nt_name": "C", "nt_code": "C", "nt_id": "///2/931", "linked_nts": [ "///2/930", "///2/932" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -55.758, "beta": 166.816, "gamma": 51.980, "delta": 81.190, "epsilon": -128.783, "zeta": -96.314, "epsilon_zeta": -32.469, "bb_type": "--", "chi": -157.734, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.763, 0.399 ], "P_xyz": [ 1.342, 9.053, 0.388 ], "form": "A", "ssZp": 4.274, "Dp": 4.730, "splay_angle": 20.776, "splay_distance": 3.305, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 170.973, "theta": -150.613, "eta_prime": -169.901, "theta_prime": -147.554, "eta_base": -115.386, "theta_base": -132.332, "v0": 2.862, "v1": -24.794, "v2": 36.117, "v3": -35.454, "v4": 20.555, "amplitude": 37.273, "phase_angle": 14.309, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.802, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 163.649, 215.842, 148.012 ], "x_axis": [ -0.162, 0.469, -0.868 ], "y_axis": [ -0.918, 0.251, 0.307 ], "z_axis": [ 0.362, 0.847, 0.390 ], "quaternion": [ 0.608, -0.222, 0.506, 0.570 ] } }, { "index": 779, "index_chain": 779, "chain_name": "2", "nt_resnum": 932, "nt_name": "G", "nt_code": "G", "nt_id": "///2/932", "linked_nts": [ "///2/931", "///2/933" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": -57.628, "beta": 154.320, "gamma": 55.221, "delta": 80.807, "epsilon": -120.232, "zeta": -132.368, "epsilon_zeta": 12.136, "bb_type": "--", "chi": -147.362, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.798, -0.250 ], "P_xyz": [ 1.120, 8.983, -0.937 ], "form": ".", "ssZp": 3.719, "Dp": 4.739, "splay_angle": 114.921, "splay_distance": 16.462, "splay_ratio": 0.843, "d22": null, "d64": null, "eta": 170.930, "theta": -151.607, "eta_prime": 178.791, "theta_prime": -179.220, "eta_base": -159.235, "theta_base": 145.104, "v0": 1.978, "v1": -24.129, "v2": 35.887, "v3": -35.746, "v4": 21.293, "amplitude": 37.268, "phase_angle": 15.645, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.446, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 165.534, 218.441, 148.797 ], "x_axis": [ -0.592, 0.369, -0.716 ], "y_axis": [ -0.675, 0.257, 0.691 ], "z_axis": [ 0.439, 0.893, 0.097 ], "quaternion": [ 0.436, -0.116, 0.662, 0.598 ] } }, { "index": 780, "index_chain": 780, "chain_name": "2", "nt_resnum": 933, "nt_name": "G", "nt_code": "G", "nt_id": "///2/933", "linked_nts": [ "///2/932", "///2/934" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 162.110, "beta": -162.597, "gamma": 27.612, "delta": 79.787, "epsilon": -127.217, "zeta": -112.081, "epsilon_zeta": -15.136, "bb_type": "--", "chi": -151.484, "glyco_bond": "anti", "C5prime_xyz": [ -1.403, 8.831, -0.002 ], "P_xyz": [ 0.795, 9.884, 0.963 ], "form": ".", "ssZp": 3.993, "Dp": 4.720, "splay_angle": 145.158, "splay_distance": 17.380, "splay_ratio": 0.954, "d22": null, "d64": null, "eta": 26.357, "theta": -140.378, "eta_prime": 31.777, "theta_prime": -156.054, "eta_base": 26.819, "theta_base": -171.315, "v0": 1.525, "v1": -24.044, "v2": 36.176, "v3": -36.318, "v4": 21.938, "amplitude": 37.702, "phase_angle": 16.361, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 169.167, 224.022, 163.853 ], "x_axis": [ -0.552, -0.694, 0.462 ], "y_axis": [ -0.677, 0.049, -0.734 ], "z_axis": [ 0.487, -0.718, -0.497 ], "quaternion": [ 0.009, -0.473, 0.724, -0.502 ] } }, { "index": 781, "index_chain": 781, "chain_name": "2", "nt_resnum": 934, "nt_name": "G", "nt_code": "G", "nt_id": "///2/934", "linked_nts": [ "///2/933", "///2/935" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": 104.908, "beta": 153.043, "gamma": 50.427, "delta": 82.041, "epsilon": -153.275, "zeta": -71.174, "epsilon_zeta": -82.101, "bb_type": "BI", "chi": -177.587, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.470, 1.555 ], "P_xyz": [ 1.144, 8.532, 1.910 ], "form": ".", "ssZp": 4.586, "Dp": 4.599, "splay_angle": 25.688, "splay_distance": 4.444, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": -54.555, "theta": -115.213, "eta_prime": -33.086, "theta_prime": -127.543, "eta_base": -21.178, "theta_base": -108.309, "v0": 3.334, "v1": -24.680, "v2": 35.476, "v3": -34.561, "v4": 19.708, "amplitude": 36.488, "phase_angle": 13.520, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.177, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 169.634, 221.341, 146.687 ], "x_axis": [ -0.904, 0.342, -0.255 ], "y_axis": [ -0.290, -0.057, 0.955 ], "z_axis": [ 0.312, 0.938, 0.151 ], "quaternion": [ 0.218, 0.020, 0.651, 0.727 ] } }, { "index": 782, "index_chain": 782, "chain_name": "2", "nt_resnum": 935, "nt_name": "G", "nt_code": "G", "nt_id": "///2/935", "linked_nts": [ "///2/934", "///2/936" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 167.822, "beta": -168.949, "gamma": 166.927, "delta": 81.679, "epsilon": -118.228, "zeta": -90.713, "epsilon_zeta": -27.515, "bb_type": "--", "chi": 173.660, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.263, 2.020 ], "P_xyz": [ 0.404, 10.016, 1.480 ], "form": "A", "ssZp": 4.721, "Dp": 4.736, "splay_angle": 24.804, "splay_distance": 3.888, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 163.317, "theta": -161.199, "eta_prime": 179.325, "theta_prime": -155.331, "eta_base": -136.659, "theta_base": -123.850, "v0": 3.511, "v1": -24.913, "v2": 35.713, "v3": -34.697, "v4": 19.665, "amplitude": 36.694, "phase_angle": 13.277, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.627, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 169.858, 225.169, 144.440 ], "x_axis": [ -0.929, 0.175, 0.327 ], "y_axis": [ 0.277, -0.260, 0.925 ], "z_axis": [ 0.247, 0.950, 0.193 ], "quaternion": [ -0.033, 0.186, 0.607, 0.772 ] } }, { "index": 783, "index_chain": 783, "chain_name": "2", "nt_resnum": 936, "nt_name": "G", "nt_code": "G", "nt_id": "///2/936", "linked_nts": [ "///2/935", "///2/937" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -53.293, "beta": 160.659, "gamma": 45.992, "delta": 78.873, "epsilon": -145.916, "zeta": -77.858, "epsilon_zeta": -68.059, "bb_type": "BI", "chi": -169.541, "glyco_bond": "anti", "C5prime_xyz": [ -1.544, 8.668, 1.060 ], "P_xyz": [ 1.018, 9.085, 1.360 ], "form": "A", "ssZp": 4.637, "Dp": 4.684, "splay_angle": 25.447, "splay_distance": 4.009, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 160.337, "theta": -147.423, "eta_prime": 175.232, "theta_prime": -145.921, "eta_base": -141.754, "theta_base": -120.606, "v0": 1.984, "v1": -24.942, "v2": 37.181, "v3": -37.071, "v4": 22.110, "amplitude": 38.630, "phase_angle": 15.741, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.377, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 169.457, 228.988, 143.832 ], "x_axis": [ -0.605, -0.106, 0.789 ], "y_axis": [ 0.775, -0.307, 0.552 ], "z_axis": [ 0.184, 0.946, 0.268 ], "quaternion": [ -0.298, 0.329, 0.507, 0.738 ] } }, { "index": 784, "index_chain": 784, "chain_name": "2", "nt_resnum": 937, "nt_name": "C", "nt_code": "C", "nt_id": "///2/937", "linked_nts": [ "///2/936", "///2/938" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.255, "beta": 167.921, "gamma": 55.529, "delta": 78.132, "epsilon": -145.421, "zeta": -71.095, "epsilon_zeta": -74.326, "bb_type": "BI", "chi": -166.807, "glyco_bond": "anti", "C5prime_xyz": [ -1.400, 8.727, 0.908 ], "P_xyz": [ 1.172, 9.191, 1.002 ], "form": "A", "ssZp": 4.604, "Dp": 4.694, "splay_angle": 19.140, "splay_distance": 3.176, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": 171.941, "theta": -143.134, "eta_prime": -175.750, "theta_prime": -142.939, "eta_base": -136.090, "theta_base": -120.629, "v0": 2.105, "v1": -25.437, "v2": 37.844, "v3": -37.638, "v4": 22.365, "amplitude": 39.286, "phase_angle": 15.573, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.902, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 168.155, 232.699, 144.609 ], "x_axis": [ -0.091, -0.276, 0.957 ], "y_axis": [ 0.982, -0.182, 0.041 ], "z_axis": [ 0.162, 0.944, 0.288 ], "quaternion": [ 0.504, -0.448, -0.394, -0.625 ] } }, { "index": 785, "index_chain": 785, "chain_name": "2", "nt_resnum": 938, "nt_name": "A", "nt_code": "A", "nt_id": "///2/938", "linked_nts": [ "///2/937", "///2/939" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -65.146, "beta": 175.863, "gamma": 52.028, "delta": 79.518, "epsilon": -172.535, "zeta": -77.726, "epsilon_zeta": -94.810, "bb_type": "BI", "chi": -157.866, "glyco_bond": "anti", "C5prime_xyz": [ -1.615, 8.816, 0.369 ], "P_xyz": [ 0.886, 9.549, 0.635 ], "form": "A", "ssZp": 4.294, "Dp": 4.401, "splay_angle": 23.834, "splay_distance": 4.081, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 163.626, "theta": -138.386, "eta_prime": 179.230, "theta_prime": -146.983, "eta_base": -141.942, "theta_base": -128.953, "v0": -1.000, "v1": -21.783, "v2": 34.976, "v3": -36.515, "v4": 23.659, "amplitude": 37.244, "phase_angle": 20.099, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.040, "frame": { "rmsd": 0.004, "origin": [ 166.772, 235.019, 146.280 ], "x_axis": [ 0.406, -0.526, 0.748 ], "y_axis": [ 0.910, 0.154, -0.386 ], "z_axis": [ 0.088, 0.837, 0.541 ], "quaternion": [ 0.725, -0.422, -0.228, -0.495 ] } }, { "index": 786, "index_chain": 786, "chain_name": "2", "nt_resnum": 939, "nt_name": "U", "nt_code": "U", "nt_id": "///2/939", "linked_nts": [ "///2/938", "///2/940" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 157.199, "beta": -156.733, "gamma": 174.480, "delta": 81.937, "epsilon": -133.061, "zeta": -70.951, "epsilon_zeta": -62.110, "bb_type": "BI", "chi": 178.609, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.339, 1.772 ], "P_xyz": [ 0.386, 10.017, 0.889 ], "form": "A", "ssZp": 4.683, "Dp": 4.704, "splay_angle": 26.164, "splay_distance": 4.064, "splay_ratio": 0.229, "d22": 4.137, "d64": 4.125, "eta": 168.785, "theta": -153.110, "eta_prime": -178.968, "theta_prime": -148.990, "eta_base": -142.655, "theta_base": -106.270, "v0": 3.682, "v1": -25.088, "v2": 35.807, "v3": -34.673, "v4": 19.536, "amplitude": 36.749, "phase_angle": 12.999, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.869, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 165.392, 237.133, 149.487 ], "x_axis": [ 0.763, -0.432, 0.481 ], "y_axis": [ 0.637, 0.374, -0.674 ], "z_axis": [ 0.112, 0.821, 0.560 ], "quaternion": [ 0.821, -0.455, -0.112, -0.326 ] } }, { "index": 787, "index_chain": 787, "chain_name": "2", "nt_resnum": 940, "nt_name": "U", "nt_code": "U", "nt_id": "///2/940", "linked_nts": [ "///2/939", "///2/941" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -60.484, "beta": 172.369, "gamma": 49.605, "delta": 81.364, "epsilon": -153.388, "zeta": -77.433, "epsilon_zeta": -75.956, "bb_type": "BI", "chi": -166.021, "glyco_bond": "anti", "C5prime_xyz": [ -1.379, 8.650, 0.889 ], "P_xyz": [ 1.176, 9.007, 1.361 ], "form": "A", "ssZp": 4.522, "Dp": 4.601, "splay_angle": 24.720, "splay_distance": 3.947, "splay_ratio": 0.217, "d22": 4.728, "d64": 5.041, "eta": 162.856, "theta": -151.652, "eta_prime": -176.708, "theta_prime": -150.366, "eta_base": -116.941, "theta_base": -134.234, "v0": 2.917, "v1": -24.737, "v2": 35.970, "v3": -35.277, "v4": 20.419, "amplitude": 37.106, "phase_angle": 14.214, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.846, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 166.808, 238.670, 152.972 ], "x_axis": [ 0.982, -0.060, -0.178 ], "y_axis": [ -0.112, 0.570, -0.814 ], "z_axis": [ 0.151, 0.819, 0.553 ], "quaternion": [ 0.881, -0.463, 0.093, 0.015 ] } }, { "index": 788, "index_chain": 788, "chain_name": "2", "nt_resnum": 941, "nt_name": "C", "nt_code": "C", "nt_id": "///2/941", "linked_nts": [ "///2/940", "///2/942" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -56.218, "beta": 170.242, "gamma": 55.637, "delta": 81.091, "epsilon": -148.835, "zeta": -81.440, "epsilon_zeta": -67.395, "bb_type": "BI", "chi": -162.290, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.833, 0.643 ], "P_xyz": [ 1.114, 9.315, 0.956 ], "form": "A", "ssZp": 4.364, "Dp": 4.532, "splay_angle": 24.008, "splay_distance": 3.798, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 177.206, "theta": -150.248, "eta_prime": -171.967, "theta_prime": -148.177, "eta_base": -145.469, "theta_base": -117.623, "v0": -0.985, "v1": -21.036, "v2": 33.777, "v3": -35.288, "v4": 22.903, "amplitude": 35.978, "phase_angle": 20.147, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.903, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 167.442, 240.241, 156.537 ], "x_axis": [ 0.830, 0.178, -0.529 ], "y_axis": [ -0.528, 0.560, -0.639 ], "z_axis": [ 0.182, 0.809, 0.558 ], "quaternion": [ 0.858, -0.422, 0.207, 0.206 ] } }, { "index": 789, "index_chain": 789, "chain_name": "2", "nt_resnum": 942, "nt_name": "G", "nt_code": "G", "nt_id": "///2/942", "linked_nts": [ "///2/941", "///2/943" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -50.174, "beta": 162.636, "gamma": 49.035, "delta": 82.212, "epsilon": -102.531, "zeta": -94.152, "epsilon_zeta": -8.379, "bb_type": "--", "chi": -159.029, "glyco_bond": "anti", "C5prime_xyz": [ -1.327, 8.775, 0.504 ], "P_xyz": [ 1.278, 9.027, 0.668 ], "form": ".", "ssZp": 4.013, "Dp": 4.678, "splay_angle": 33.149, "splay_distance": 5.448, "splay_ratio": 0.285, "d22": null, "d64": null, "eta": -176.205, "theta": -152.756, "eta_prime": -166.731, "theta_prime": -160.139, "eta_base": -129.710, "theta_base": -168.314, "v0": 2.352, "v1": -23.821, "v2": 35.064, "v3": -34.690, "v4": 20.415, "amplitude": 36.303, "phase_angle": 15.008, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.741, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 169.165, 242.809, 158.742 ], "x_axis": [ 0.392, 0.448, -0.803 ], "y_axis": [ -0.898, 0.374, -0.230 ], "z_axis": [ 0.197, 0.812, 0.549 ], "quaternion": [ 0.761, -0.343, 0.329, 0.442 ] } }, { "index": 790, "index_chain": 790, "chain_name": "2", "nt_resnum": 943, "nt_name": "U", "nt_code": "U", "nt_id": "///2/943", "linked_nts": [ "///2/942", "///2/944" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -100.311, "beta": 92.870, "gamma": 118.932, "delta": 80.211, "epsilon": -127.846, "zeta": -63.321, "epsilon_zeta": -64.525, "bb_type": "BI", "chi": -179.902, "glyco_bond": "anti", "C5prime_xyz": [ -1.411, 8.387, 1.681 ], "P_xyz": [ -0.223, 9.468, -0.382 ], "form": ".", "ssZp": 4.744, "Dp": 4.757, "splay_angle": 33.072, "splay_distance": 5.035, "splay_ratio": 0.286, "d22": null, "d64": null, "eta": 155.283, "theta": -139.362, "eta_prime": 163.444, "theta_prime": -141.767, "eta_base": 164.998, "theta_base": -92.573, "v0": 3.839, "v1": -26.075, "v2": 37.227, "v3": -36.024, "v4": 20.293, "amplitude": 38.202, "phase_angle": 12.978, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.109, "frame": { "rmsd": 0.006, "origin": [ 169.683, 244.354, 163.940 ], "x_axis": [ 0.446, 0.265, -0.855 ], "y_axis": [ -0.848, 0.432, -0.308 ], "z_axis": [ 0.288, 0.862, 0.417 ], "quaternion": [ 0.758, -0.386, 0.377, 0.367 ] } }, { "index": 791, "index_chain": 791, "chain_name": "2", "nt_resnum": 944, "nt_name": "A", "nt_code": "A", "nt_id": "///2/944", "linked_nts": [ "///2/943", "///2/945" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -60.781, "beta": 159.743, "gamma": 58.705, "delta": 81.037, "epsilon": -148.010, "zeta": -71.287, "epsilon_zeta": -76.724, "bb_type": "BI", "chi": -179.246, "glyco_bond": "anti", "C5prime_xyz": [ -1.604, 8.448, 1.619 ], "P_xyz": [ 0.970, 8.772, 1.991 ], "form": "A", "ssZp": 4.603, "Dp": 4.617, "splay_angle": 25.201, "splay_distance": 3.958, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 159.485, "theta": -141.717, "eta_prime": -170.556, "theta_prime": -142.034, "eta_base": -90.764, "theta_base": -118.874, "v0": 1.445, "v1": -23.530, "v2": 35.430, "v3": -35.561, "v4": 21.530, "amplitude": 36.934, "phase_angle": 16.411, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.695, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 171.624, 248.520, 161.883 ], "x_axis": [ -0.503, 0.454, -0.735 ], "y_axis": [ -0.838, -0.046, 0.544 ], "z_axis": [ 0.213, 0.890, 0.404 ], "quaternion": [ 0.462, -0.187, 0.513, 0.699 ] } }, { "index": 792, "index_chain": 792, "chain_name": "2", "nt_resnum": 945, "nt_name": "U", "nt_code": "U", "nt_id": "///2/945", "linked_nts": [ "///2/944", "///2/946" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -67.037, "beta": -172.899, "gamma": 47.619, "delta": 81.919, "epsilon": -147.766, "zeta": -71.312, "epsilon_zeta": -76.454, "bb_type": "BI", "chi": -164.670, "glyco_bond": "anti", "C5prime_xyz": [ -1.294, 8.675, 0.821 ], "P_xyz": [ 1.148, 9.066, 1.696 ], "form": "A", "ssZp": 4.484, "Dp": 4.611, "splay_angle": 21.160, "splay_distance": 3.369, "splay_ratio": 0.185, "d22": 3.989, "d64": 3.876, "eta": 170.205, "theta": -143.771, "eta_prime": -179.503, "theta_prime": -140.508, "eta_base": -142.467, "theta_base": -108.175, "v0": 2.454, "v1": -23.926, "v2": 35.109, "v3": -34.666, "v4": 20.334, "amplitude": 36.320, "phase_angle": 14.835, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.879, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 173.727, 251.864, 161.639 ], "x_axis": [ -0.923, 0.227, -0.311 ], "y_axis": [ -0.374, -0.336, 0.865 ], "z_axis": [ 0.092, 0.914, 0.395 ], "quaternion": [ 0.185, -0.067, 0.546, 0.814 ] } }, { "index": 793, "index_chain": 793, "chain_name": "2", "nt_resnum": 946, "nt_name": "U", "nt_code": "U", "nt_id": "///2/946", "linked_nts": [ "///2/945", "///2/947" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.153, "beta": 170.480, "gamma": 50.570, "delta": 80.500, "epsilon": -152.342, "zeta": -73.288, "epsilon_zeta": -79.054, "bb_type": "BI", "chi": -163.094, "glyco_bond": "anti", "C5prime_xyz": [ -1.435, 8.733, 0.714 ], "P_xyz": [ 1.124, 9.187, 1.071 ], "form": "A", "ssZp": 4.463, "Dp": 4.585, "splay_angle": 17.621, "splay_distance": 2.837, "splay_ratio": 0.156, "d22": null, "d64": null, "eta": 164.266, "theta": -148.138, "eta_prime": -179.910, "theta_prime": -148.912, "eta_base": -132.925, "theta_base": -123.579, "v0": 1.298, "v1": -23.560, "v2": 35.624, "v3": -35.843, "v4": 21.775, "amplitude": 37.180, "phase_angle": 16.636, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.976, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 173.388, 255.212, 161.471 ], "x_axis": [ -0.972, -0.134, 0.195 ], "y_axis": [ 0.230, -0.343, 0.911 ], "z_axis": [ -0.055, 0.930, 0.364 ], "quaternion": [ -0.111, 0.043, 0.562, 0.818 ] } }, { "index": 794, "index_chain": 794, "chain_name": "2", "nt_resnum": 947, "nt_name": "G", "nt_code": "G", "nt_id": "///2/947", "linked_nts": [ "///2/946", "///2/948" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.159, "beta": 170.089, "gamma": 48.377, "delta": 79.639, "epsilon": -152.326, "zeta": -82.898, "epsilon_zeta": -69.428, "bb_type": "BI", "chi": -161.594, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.790, 0.600 ], "P_xyz": [ 1.186, 9.252, 0.884 ], "form": "A", "ssZp": 4.454, "Dp": 4.616, "splay_angle": 21.792, "splay_distance": 3.432, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 162.797, "theta": -156.814, "eta_prime": 175.298, "theta_prime": -155.436, "eta_base": -143.594, "theta_base": -136.820, "v0": 1.673, "v1": -24.247, "v2": 36.378, "v3": -36.407, "v4": 21.915, "amplitude": 37.871, "phase_angle": 16.141, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.937, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 172.377, 257.850, 161.213 ], "x_axis": [ -0.684, -0.400, 0.610 ], "y_axis": [ 0.691, -0.088, 0.718 ], "z_axis": [ -0.234, 0.912, 0.336 ], "quaternion": [ -0.376, 0.129, 0.561, 0.726 ] } }, { "index": 795, "index_chain": 795, "chain_name": "2", "nt_resnum": 948, "nt_name": "C", "nt_code": "C", "nt_id": "///2/948", "linked_nts": [ "///2/947", "///2/949" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -53.836, "beta": 161.370, "gamma": 55.208, "delta": 79.953, "epsilon": -141.688, "zeta": -71.041, "epsilon_zeta": -70.647, "bb_type": "BI", "chi": -158.025, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.792, 0.399 ], "P_xyz": [ 1.257, 9.111, 0.159 ], "form": ".", "ssZp": 4.357, "Dp": 4.682, "splay_angle": 31.157, "splay_distance": 5.019, "splay_ratio": 0.270, "d22": null, "d64": null, "eta": 173.441, "theta": -137.412, "eta_prime": -176.145, "theta_prime": -137.772, "eta_base": -147.186, "theta_base": -113.671, "v0": 2.086, "v1": -24.614, "v2": 36.566, "v3": -36.336, "v4": 21.577, "amplitude": 37.946, "phase_angle": 15.502, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.791, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 170.657, 260.819, 161.120 ], "x_axis": [ -0.340, -0.341, 0.876 ], "y_axis": [ 0.882, 0.207, 0.423 ], "z_axis": [ -0.326, 0.917, 0.231 ], "quaternion": [ 0.524, -0.236, -0.574, -0.584 ] } }, { "index": 796, "index_chain": 796, "chain_name": "2", "nt_resnum": 949, "nt_name": "G", "nt_code": "G", "nt_id": "///2/949", "linked_nts": [ "///2/948", "///2/950" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.226, "beta": -177.530, "gamma": 42.439, "delta": 79.477, "epsilon": -144.745, "zeta": -80.046, "epsilon_zeta": -64.699, "bb_type": "BI", "chi": -172.643, "glyco_bond": "anti", "C5prime_xyz": [ -1.629, 8.673, 1.249 ], "P_xyz": [ 0.662, 9.227, 2.393 ], "form": "A", "ssZp": 4.595, "Dp": 4.626, "splay_angle": 23.981, "splay_distance": 3.782, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 166.851, "theta": -152.704, "eta_prime": 178.396, "theta_prime": -147.613, "eta_base": -142.746, "theta_base": -118.175, "v0": 0.054, "v1": -22.770, "v2": 35.543, "v3": -36.518, "v4": 22.983, "amplitude": 37.487, "phase_angle": 18.536, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.754, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 167.717, 264.048, 163.594 ], "x_axis": [ 0.342, -0.669, 0.660 ], "y_axis": [ 0.939, 0.206, -0.277 ], "z_axis": [ 0.049, 0.714, 0.698 ], "quaternion": [ 0.749, -0.331, -0.204, -0.536 ] } }, { "index": 797, "index_chain": 797, "chain_name": "2", "nt_resnum": 950, "nt_name": "C", "nt_code": "C", "nt_id": "///2/950", "linked_nts": [ "///2/949", "///2/951" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.857, "beta": 169.692, "gamma": 49.888, "delta": 79.677, "epsilon": -150.902, "zeta": -73.731, "epsilon_zeta": -77.171, "bb_type": "BI", "chi": -167.679, "glyco_bond": "anti", "C5prime_xyz": [ -1.398, 8.706, 0.973 ], "P_xyz": [ 1.156, 9.108, 1.385 ], "form": "A", "ssZp": 4.577, "Dp": 4.634, "splay_angle": 23.482, "splay_distance": 3.769, "splay_ratio": 0.208, "d22": 4.370, "d64": 4.679, "eta": 167.790, "theta": -148.429, "eta_prime": 179.490, "theta_prime": -147.307, "eta_base": -140.621, "theta_base": -126.546, "v0": 2.055, "v1": -24.712, "v2": 36.737, "v3": -36.558, "v4": 21.753, "amplitude": 38.140, "phase_angle": 15.588, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.896, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 166.462, 265.716, 166.748 ], "x_axis": [ 0.797, -0.491, 0.352 ], "y_axis": [ 0.595, 0.537, -0.598 ], "z_axis": [ 0.105, 0.686, 0.720 ], "quaternion": [ 0.874, -0.367, -0.071, -0.311 ] } }, { "index": 798, "index_chain": 798, "chain_name": "2", "nt_resnum": 951, "nt_name": "C", "nt_code": "C", "nt_id": "///2/951", "linked_nts": [ "///2/950", "///2/952" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.631, "beta": 170.875, "gamma": 58.518, "delta": 80.274, "epsilon": -151.208, "zeta": -73.760, "epsilon_zeta": -77.447, "bb_type": "BI", "chi": -167.365, "glyco_bond": "anti", "C5prime_xyz": [ -1.543, 8.778, 0.933 ], "P_xyz": [ 0.999, 9.319, 1.266 ], "form": ".", "ssZp": 4.495, "Dp": 4.558, "splay_angle": 14.377, "splay_distance": 2.283, "splay_ratio": 0.126, "d22": null, "d64": null, "eta": 172.173, "theta": -147.408, "eta_prime": -174.964, "theta_prime": -146.465, "eta_base": -140.627, "theta_base": -136.173, "v0": -0.806, "v1": -21.776, "v2": 34.743, "v3": -36.215, "v4": 23.343, "amplitude": 36.936, "phase_angle": 19.844, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.943, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 166.053, 266.641, 170.379 ], "x_axis": [ 0.974, -0.224, -0.045 ], "y_axis": [ 0.135, 0.722, -0.678 ], "z_axis": [ 0.184, 0.655, 0.733 ], "quaternion": [ 0.926, -0.360, 0.062, -0.097 ] } }, { "index": 799, "index_chain": 799, "chain_name": "2", "nt_resnum": 952, "nt_name": "G", "nt_code": "G", "nt_id": "///2/952", "linked_nts": [ "///2/951", "///2/953" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -86.738, "beta": -165.511, "gamma": 49.874, "delta": 85.082, "epsilon": -157.555, "zeta": -84.903, "epsilon_zeta": -72.652, "bb_type": "BI", "chi": -138.444, "glyco_bond": "anti", "C5prime_xyz": [ -1.164, 8.655, -0.699 ], "P_xyz": [ 1.420, 9.071, -0.458 ], "form": ".", "ssZp": 3.674, "Dp": 4.523, "splay_angle": 21.445, "splay_distance": 3.471, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 158.194, "theta": -159.992, "eta_prime": 166.642, "theta_prime": -157.873, "eta_base": -172.252, "theta_base": -145.072, "v0": 4.659, "v1": -24.449, "v2": 33.858, "v3": -32.107, "v4": 17.354, "amplitude": 34.498, "phase_angle": 11.052, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.529, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 166.162, 266.956, 172.637 ], "x_axis": [ 0.786, 0.069, -0.615 ], "y_axis": [ -0.276, 0.928, -0.249 ], "z_axis": [ 0.553, 0.366, 0.748 ], "quaternion": [ 0.930, -0.165, 0.314, 0.093 ] } }, { "index": 800, "index_chain": 800, "chain_name": "2", "nt_resnum": 953, "nt_name": "C", "nt_code": "C", "nt_id": "///2/953", "linked_nts": [ "///2/952", "///2/954" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -57.290, "beta": 162.396, "gamma": 55.455, "delta": 84.387, "epsilon": -175.374, "zeta": -86.685, "epsilon_zeta": -88.688, "bb_type": "BI", "chi": -139.507, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.721, -0.673 ], "P_xyz": [ 1.282, 8.809, -1.190 ], "form": ".", "ssZp": 3.737, "Dp": 4.320, "splay_angle": 27.621, "splay_distance": 4.435, "splay_ratio": 0.239, "d22": 4.460, "d64": 4.442, "eta": 168.882, "theta": -132.762, "eta_prime": -177.076, "theta_prime": -139.052, "eta_base": -155.121, "theta_base": -109.346, "v0": 2.192, "v1": -22.335, "v2": 32.859, "v3": -32.527, "v4": 19.168, "amplitude": 34.024, "phase_angle": 15.038, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.771, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 167.733, 267.827, 175.607 ], "x_axis": [ 0.611, 0.353, -0.708 ], "y_axis": [ -0.414, 0.905, 0.094 ], "z_axis": [ 0.674, 0.236, 0.700 ], "quaternion": [ 0.897, -0.040, 0.386, 0.214 ] } }, { "index": 801, "index_chain": 801, "chain_name": "2", "nt_resnum": 954, "nt_name": "U", "nt_code": "U", "nt_id": "///2/954", "linked_nts": [ "///2/953", "///2/955" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 167.311, "beta": -131.265, "gamma": 153.591, "delta": 82.552, "epsilon": -137.445, "zeta": -87.907, "epsilon_zeta": -49.538, "bb_type": "BI", "chi": -161.699, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.684, 0.641 ], "P_xyz": [ 0.672, 9.042, -1.009 ], "form": ".", "ssZp": 4.426, "Dp": 4.675, "splay_angle": 31.588, "splay_distance": 5.059, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 164.406, "theta": -154.607, "eta_prime": -172.849, "theta_prime": -151.270, "eta_base": -124.202, "theta_base": -154.596, "v0": 2.916, "v1": -24.196, "v2": 35.083, "v3": -34.396, "v4": 19.866, "amplitude": 36.175, "phase_angle": 14.114, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.069, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 171.438, 269.768, 177.080 ], "x_axis": [ 0.247, 0.804, -0.541 ], "y_axis": [ -0.630, 0.558, 0.541 ], "z_axis": [ 0.736, 0.208, 0.644 ], "quaternion": [ 0.782, 0.106, 0.408, 0.458 ] } }, { "index": 802, "index_chain": 802, "chain_name": "2", "nt_resnum": 955, "nt_name": "A", "nt_code": "A", "nt_id": "///2/955", "linked_nts": [ "///2/954", "///2/956" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -61.170, "beta": -170.826, "gamma": 62.534, "delta": 147.579, "epsilon": -84.463, "zeta": 100.102, "epsilon_zeta": 175.435, "bb_type": "--", "chi": -116.174, "glyco_bond": "anti", "C5prime_xyz": [ -2.136, 8.435, -1.382 ], "P_xyz": [ 0.231, 9.437, -0.838 ], "form": ".", "ssZp": 0.465, "Dp": 0.518, "splay_angle": 44.964, "splay_distance": 7.632, "splay_ratio": 0.382, "d22": null, "d64": null, "eta": -147.058, "theta": 165.556, "eta_prime": -132.711, "theta_prime": 147.500, "eta_base": -140.254, "theta_base": 175.353, "v0": -21.710, "v1": 36.190, "v2": -36.030, "v3": 24.448, "v4": -1.918, "amplitude": 37.458, "phase_angle": 164.125, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.750, "filter_rmsd": 0.036, "frame": { "rmsd": 0.004, "origin": [ 175.920, 269.350, 179.389 ], "x_axis": [ -0.286, 0.708, -0.646 ], "y_axis": [ -0.624, 0.375, 0.686 ], "z_axis": [ 0.728, 0.599, 0.334 ], "quaternion": [ 0.596, 0.037, 0.576, 0.558 ] } }, { "index": 803, "index_chain": 803, "chain_name": "2", "nt_resnum": 956, "nt_name": "G", "nt_code": "G", "nt_id": "///2/956", "linked_nts": [ "///2/955", "///2/957" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,A-minor", "alpha": 74.459, "beta": -100.345, "gamma": -161.479, "delta": 83.016, "epsilon": -150.703, "zeta": -65.838, "epsilon_zeta": -84.865, "bb_type": "BI", "chi": -174.760, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.490, 1.394 ], "P_xyz": [ -0.557, 9.890, -0.681 ], "form": "A", "ssZp": 4.638, "Dp": 4.646, "splay_angle": 28.000, "splay_distance": 4.322, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": -140.396, "theta": -170.899, "eta_prime": -140.836, "theta_prime": -168.852, "eta_base": -105.993, "theta_base": -138.910, "v0": 4.949, "v1": -26.061, "v2": 36.114, "v3": -34.256, "v4": 18.505, "amplitude": 36.799, "phase_angle": 11.073, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.521, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 179.875, 264.024, 183.164 ], "x_axis": [ 0.719, 0.093, 0.688 ], "y_axis": [ -0.666, 0.375, 0.645 ], "z_axis": [ -0.199, -0.922, 0.332 ], "quaternion": [ 0.779, 0.503, -0.285, 0.243 ] } }, { "index": 804, "index_chain": 804, "chain_name": "2", "nt_resnum": 957, "nt_name": "A", "nt_code": "A", "nt_id": "///2/957", "linked_nts": [ "///2/956", "///2/958" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate", "alpha": -76.587, "beta": -172.720, "gamma": 57.252, "delta": 81.567, "epsilon": -120.598, "zeta": -68.895, "epsilon_zeta": -51.704, "bb_type": "--", "chi": -171.250, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.566, 1.184 ], "P_xyz": [ 1.074, 8.901, 1.919 ], "form": ".", "ssZp": 4.599, "Dp": 4.745, "splay_angle": 34.392, "splay_distance": 5.059, "splay_ratio": 0.304, "d22": null, "d64": null, "eta": 175.255, "theta": -134.765, "eta_prime": -174.097, "theta_prime": -134.778, "eta_base": -134.938, "theta_base": -77.061, "v0": 3.027, "v1": -24.846, "v2": 35.989, "v3": -35.234, "v4": 20.313, "amplitude": 37.095, "phase_angle": 14.028, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.821, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 181.062, 259.991, 184.166 ], "x_axis": [ 0.189, 0.442, 0.877 ], "y_axis": [ -0.944, 0.327, 0.039 ], "z_axis": [ -0.270, -0.836, 0.479 ], "quaternion": [ 0.706, 0.310, -0.406, 0.491 ] } }, { "index": 805, "index_chain": 805, "chain_name": "2", "nt_resnum": 958, "nt_name": "G", "nt_code": "G", "nt_id": "///2/958", "linked_nts": [ "///2/957", "///2/959" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -86.747, "beta": 109.755, "gamma": 145.445, "delta": 80.177, "epsilon": -126.649, "zeta": -28.221, "epsilon_zeta": -98.428, "bb_type": "--", "chi": -32.852, "glyco_bond": "syn", "C5prime_xyz": [ -4.577, 4.858, -2.843 ], "P_xyz": [ -6.596, 3.247, -2.362 ], "form": ".", "ssZp": -4.036, "Dp": 4.638, "splay_angle": 19.928, "splay_distance": 3.267, "splay_ratio": 0.173, "d22": null, "d64": null, "eta": -157.209, "theta": -127.182, "eta_prime": -150.230, "theta_prime": -119.043, "eta_base": -80.653, "theta_base": -97.200, "v0": -2.089, "v1": -20.846, "v2": 34.461, "v3": -36.673, "v4": 24.424, "amplitude": 37.105, "phase_angle": 21.762, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.027, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 178.924, 258.131, 188.357 ], "x_axis": [ 0.842, -0.383, 0.380 ], "y_axis": [ 0.139, -0.527, -0.838 ], "z_axis": [ 0.521, 0.759, -0.391 ], "quaternion": [ -0.481, 0.831, -0.074, 0.271 ] } }, { "index": 806, "index_chain": 806, "chain_name": "2", "nt_resnum": 959, "nt_name": "G", "nt_code": "G", "nt_id": "///2/959", "linked_nts": [ "///2/958", "///2/960" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -97.627, "beta": -177.945, "gamma": 48.984, "delta": 81.025, "epsilon": -157.491, "zeta": -77.397, "epsilon_zeta": -80.093, "bb_type": "BI", "chi": -157.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.765, 0.404 ], "P_xyz": [ 1.272, 9.219, 0.814 ], "form": "A", "ssZp": 4.382, "Dp": 4.585, "splay_angle": 22.794, "splay_distance": 3.626, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 127.284, "theta": -157.502, "eta_prime": 168.594, "theta_prime": -156.953, "eta_base": -140.773, "theta_base": -145.817, "v0": 3.301, "v1": -25.219, "v2": 36.356, "v3": -35.435, "v4": 20.268, "amplitude": 37.414, "phase_angle": 13.655, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.013, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 177.683, 255.781, 190.259 ], "x_axis": [ -0.863, 0.468, -0.191 ], "y_axis": [ -0.039, -0.439, -0.898 ], "z_axis": [ -0.504, -0.767, 0.397 ], "quaternion": [ 0.155, -0.212, -0.507, 0.821 ] } }, { "index": 807, "index_chain": 807, "chain_name": "2", "nt_resnum": 960, "nt_name": "U", "nt_code": "U", "nt_id": "///2/960", "linked_nts": [ "///2/959", "///2/961" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -64.980, "beta": 165.741, "gamma": 61.497, "delta": 79.950, "epsilon": -142.361, "zeta": -107.846, "epsilon_zeta": -34.515, "bb_type": "BI", "chi": -163.637, "glyco_bond": "anti", "C5prime_xyz": [ -1.535, 8.727, 0.722 ], "P_xyz": [ 1.030, 9.252, 0.594 ], "form": ".", "ssZp": 4.504, "Dp": 4.671, "splay_angle": 76.570, "splay_distance": 11.671, "splay_ratio": 0.621, "d22": null, "d64": null, "eta": 171.344, "theta": -136.976, "eta_prime": -179.020, "theta_prime": -169.589, "eta_base": -157.302, "theta_base": 143.063, "v0": 1.432, "v1": -24.120, "v2": 36.365, "v3": -36.527, "v4": 22.114, "amplitude": 37.921, "phase_angle": 16.470, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.834, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 176.709, 253.881, 193.189 ], "x_axis": [ -0.808, 0.312, -0.500 ], "y_axis": [ 0.218, -0.629, -0.746 ], "z_axis": [ -0.548, -0.712, 0.440 ], "quaternion": [ 0.028, -0.309, -0.430, 0.848 ] } }, { "index": 808, "index_chain": 808, "chain_name": "2", "nt_resnum": 961, "nt_name": "G", "nt_code": "G", "nt_id": "///2/961", "linked_nts": [ "///2/960", "///2/962" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": 71.991, "beta": 145.743, "gamma": 163.511, "delta": 81.338, "epsilon": -128.837, "zeta": -51.877, "epsilon_zeta": -76.960, "bb_type": "BI", "chi": 118.897, "glyco_bond": "--", "C5prime_xyz": [ -3.120, 6.351, 3.434 ], "P_xyz": [ -2.247, 8.221, 5.066 ], "form": ".", "ssZp": 2.492, "Dp": 4.672, "splay_angle": 29.907, "splay_distance": 4.170, "splay_ratio": 0.262, "d22": null, "d64": null, "eta": 35.501, "theta": -107.140, "eta_prime": 37.828, "theta_prime": -104.023, "eta_base": 29.474, "theta_base": -27.998, "v0": 2.070, "v1": -24.008, "v2": 35.565, "v3": -35.372, "v4": 21.007, "amplitude": 36.903, "phase_angle": 15.473, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 183.868, 246.926, 199.237 ], "x_axis": [ 0.767, -0.624, -0.147 ], "y_axis": [ -0.611, -0.641, -0.465 ], "z_axis": [ 0.196, 0.446, -0.873 ], "quaternion": [ -0.251, 0.906, -0.341, 0.013 ] } }, { "index": 809, "index_chain": 809, "chain_name": "2", "nt_resnum": 962, "nt_name": "A", "nt_code": "A", "nt_id": "///2/962", "linked_nts": [ "///2/961", "///2/963" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -151.207, "beta": -106.715, "gamma": 65.284, "delta": 87.493, "epsilon": 155.767, "zeta": -73.092, "epsilon_zeta": -131.141, "bb_type": "BI", "chi": -121.282, "glyco_bond": "anti", "C5prime_xyz": [ -1.209, 8.285, -1.561 ], "P_xyz": [ 1.225, 8.215, -0.560 ], "form": ".", "ssZp": 2.857, "Dp": 3.886, "splay_angle": 24.124, "splay_distance": 4.058, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 122.089, "theta": -147.790, "eta_prime": 166.082, "theta_prime": -148.600, "eta_base": -95.105, "theta_base": -129.134, "v0": 6.723, "v1": -23.617, "v2": 30.565, "v3": -27.618, "v4": 13.316, "amplitude": 30.758, "phase_angle": 6.426, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 184.865, 246.077, 195.278 ], "x_axis": [ -0.547, -0.711, -0.441 ], "y_axis": [ -0.822, 0.556, 0.124 ], "z_axis": [ 0.157, 0.431, -0.889 ], "quaternion": [ 0.173, -0.443, 0.865, 0.160 ] } }, { "index": 810, "index_chain": 810, "chain_name": "2", "nt_resnum": 963, "nt_name": "A", "nt_code": "A", "nt_id": "///2/963", "linked_nts": [ "///2/962", "///2/964" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -149.845, "beta": -132.858, "gamma": 105.710, "delta": 86.972, "epsilon": 170.287, "zeta": -72.644, "epsilon_zeta": -117.069, "bb_type": "BI", "chi": -127.638, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.490, -1.265 ], "P_xyz": [ 1.176, 7.893, -1.914 ], "form": ".", "ssZp": 3.238, "Dp": 4.083, "splay_angle": 30.410, "splay_distance": 4.895, "splay_ratio": 0.279, "d22": null, "d64": null, "eta": 163.088, "theta": -152.361, "eta_prime": 179.866, "theta_prime": -157.796, "eta_base": -151.395, "theta_base": -135.228, "v0": 3.195, "v1": -21.518, "v2": 30.569, "v3": -29.591, "v4": 16.755, "amplitude": 31.366, "phase_angle": 12.949, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 184.978, 248.796, 192.268 ], "x_axis": [ -0.857, -0.445, -0.259 ], "y_axis": [ -0.495, 0.849, 0.182 ], "z_axis": [ 0.139, 0.285, -0.949 ], "quaternion": [ 0.104, -0.246, 0.956, 0.122 ] } }, { "index": 811, "index_chain": 811, "chain_name": "2", "nt_resnum": 964, "nt_name": "A", "nt_code": "A", "nt_id": "///2/964", "linked_nts": [ "///2/963", "///2/965" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop", "alpha": -109.206, "beta": -150.758, "gamma": 83.521, "delta": 90.288, "epsilon": -158.958, "zeta": -82.117, "epsilon_zeta": -76.841, "bb_type": "BI", "chi": -123.005, "glyco_bond": "anti", "C5prime_xyz": [ -1.048, 8.193, -1.501 ], "P_xyz": [ 1.464, 7.521, -1.982 ], "form": ".", "ssZp": 2.935, "Dp": 4.536, "splay_angle": 25.587, "splay_distance": 4.178, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 179.328, "theta": -147.030, "eta_prime": -173.904, "theta_prime": -154.420, "eta_base": -146.906, "theta_base": -150.792, "v0": 10.375, "v1": -27.439, "v2": 33.224, "v3": -28.141, "v4": 11.300, "amplitude": 33.228, "phase_angle": 0.912, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 185.149, 251.340, 188.089 ], "x_axis": [ -0.998, 0.033, -0.060 ], "y_axis": [ 0.019, 0.977, 0.212 ], "z_axis": [ 0.066, 0.210, -0.975 ], "quaternion": [ 0.032, 0.013, 0.994, 0.106 ] } }, { "index": 812, "index_chain": 812, "chain_name": "2", "nt_resnum": 965, "nt_name": "U", "nt_code": "U", "nt_id": "///2/965", "linked_nts": [ "///2/964", "///2/966" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop", "alpha": -63.600, "beta": 157.573, "gamma": 63.155, "delta": 82.470, "epsilon": -115.749, "zeta": -48.288, "epsilon_zeta": -67.461, "bb_type": "--", "chi": -141.983, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.698, -0.558 ], "P_xyz": [ 1.034, 8.781, -1.514 ], "form": ".", "ssZp": 3.373, "Dp": 4.732, "splay_angle": 52.851, "splay_distance": 8.482, "splay_ratio": 0.445, "d22": 3.521, "d64": 4.641, "eta": 177.097, "theta": -92.584, "eta_prime": -175.241, "theta_prime": -89.351, "eta_base": -160.083, "theta_base": -54.410, "v0": 3.112, "v1": -24.450, "v2": 35.360, "v3": -34.523, "v4": 19.834, "amplitude": 36.416, "phase_angle": 13.832, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.610, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 185.900, 252.421, 184.124 ], "x_axis": [ -0.964, 0.256, 0.075 ], "y_axis": [ 0.266, 0.948, 0.177 ], "z_axis": [ -0.026, 0.191, -0.981 ], "quaternion": [ -0.025, 0.132, 0.986, 0.093 ] } }, { "index": 813, "index_chain": 813, "chain_name": "2", "nt_resnum": 966, "nt_name": "U", "nt_code": "U", "nt_id": "///2/966", "linked_nts": [ "///2/965", "///2/967" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop", "alpha": -67.298, "beta": 179.383, "gamma": 54.951, "delta": 80.559, "epsilon": -126.444, "zeta": -86.361, "epsilon_zeta": -40.083, "bb_type": "--", "chi": -156.243, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.762, 0.303 ], "P_xyz": [ 1.175, 9.265, 0.460 ], "form": "A", "ssZp": 4.189, "Dp": 4.718, "splay_angle": 22.317, "splay_distance": 3.651, "splay_ratio": 0.194, "d22": 4.301, "d64": 3.914, "eta": 162.486, "theta": -141.278, "eta_prime": -164.059, "theta_prime": -137.680, "eta_base": -108.715, "theta_base": -121.680, "v0": 1.722, "v1": -23.925, "v2": 35.845, "v3": -35.832, "v4": 21.502, "amplitude": 37.294, "phase_angle": 16.025, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.334, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 181.036, 259.360, 184.516 ], "x_axis": [ 0.218, 0.592, 0.776 ], "y_axis": [ 0.947, 0.065, -0.315 ], "z_axis": [ -0.237, 0.803, -0.547 ], "quaternion": [ -0.429, 0.652, 0.590, 0.206 ] } }, { "index": 814, "index_chain": 814, "chain_name": "2", "nt_resnum": 967, "nt_name": "C", "nt_code": "C", "nt_id": "///2/967", "linked_nts": [ "///2/966", "///2/968" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,A-minor", "alpha": -62.090, "beta": 172.196, "gamma": 44.155, "delta": 80.981, "epsilon": -161.442, "zeta": -77.249, "epsilon_zeta": -84.192, "bb_type": "BI", "chi": -143.119, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.823, -0.474 ], "P_xyz": [ 1.002, 9.478, -0.525 ], "form": ".", "ssZp": 3.884, "Dp": 4.472, "splay_angle": 30.057, "splay_distance": 5.096, "splay_ratio": 0.262, "d22": 4.910, "d64": 5.401, "eta": 157.941, "theta": -126.911, "eta_prime": 170.236, "theta_prime": -131.218, "eta_base": -163.519, "theta_base": -107.721, "v0": -0.483, "v1": -21.591, "v2": 34.169, "v3": -35.428, "v4": 22.653, "amplitude": 36.219, "phase_angle": 19.371, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.593, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 179.530, 262.596, 183.748 ], "x_axis": [ 0.698, 0.063, 0.714 ], "y_axis": [ 0.716, -0.031, -0.697 ], "z_axis": [ -0.021, 0.998, -0.067 ], "quaternion": [ 0.632, -0.670, -0.291, -0.258 ] } }, { "index": 815, "index_chain": 815, "chain_name": "2", "nt_resnum": 968, "nt_name": "U", "nt_code": "U", "nt_id": "///2/968", "linked_nts": [ "///2/967", "///2/969" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop", "alpha": 161.953, "beta": -152.283, "gamma": 175.316, "delta": 81.290, "epsilon": -103.647, "zeta": -151.837, "epsilon_zeta": 48.191, "bb_type": "--", "chi": -156.838, "glyco_bond": "anti", "C5prime_xyz": [ -1.417, 8.749, 0.334 ], "P_xyz": [ -0.117, 9.972, -1.585 ], "form": ".", "ssZp": 3.952, "Dp": 4.712, "splay_angle": 72.115, "splay_distance": 12.335, "splay_ratio": 0.592, "d22": 8.912, "d64": 11.091, "eta": 179.145, "theta": 162.461, "eta_prime": -166.667, "theta_prime": 171.265, "eta_base": -130.874, "theta_base": 157.285, "v0": 1.773, "v1": -23.830, "v2": 35.586, "v3": -35.562, "v4": 21.324, "amplitude": 37.009, "phase_angle": 15.941, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.839, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 181.021, 267.048, 185.730 ], "x_axis": [ 0.968, 0.026, 0.251 ], "y_axis": [ 0.249, 0.059, -0.967 ], "z_axis": [ -0.040, 0.998, 0.051 ], "quaternion": [ 0.721, -0.681, -0.101, -0.077 ] } }, { "index": 816, "index_chain": 816, "chain_name": "2", "nt_resnum": 969, "nt_name": "U", "nt_code": "U", "nt_id": "///2/969", "linked_nts": [ "///2/968", "///2/970" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,k-turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": 37.308, "beta": 175.660, "gamma": -72.185, "delta": 148.179, "epsilon": -127.448, "zeta": 87.504, "epsilon_zeta": 145.048, "bb_type": "--", "chi": -128.019, "glyco_bond": "anti", "C5prime_xyz": [ -1.798, 8.607, -0.762 ], "P_xyz": [ -1.320, 11.179, -0.608 ], "form": ".", "ssZp": 1.487, "Dp": 1.490, "splay_angle": 145.147, "splay_distance": 18.358, "splay_ratio": 0.954, "d22": null, "d64": null, "eta": -172.913, "theta": 64.895, "eta_prime": 174.639, "theta_prime": 26.617, "eta_base": 148.266, "theta_base": -34.535, "v0": -19.946, "v1": 34.843, "v2": -35.604, "v3": 24.993, "v4": -3.382, "amplitude": 36.624, "phase_angle": 166.447, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.060, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 172.619, 275.863, 183.767 ], "x_axis": [ 0.058, -0.676, 0.735 ], "y_axis": [ 0.763, -0.445, -0.470 ], "z_axis": [ 0.644, 0.588, 0.490 ], "quaternion": [ 0.525, -0.503, -0.043, -0.685 ] } }, { "index": 817, "index_chain": 817, "chain_name": "2", "nt_resnum": 970, "nt_name": "G", "nt_code": "G", "nt_id": "///2/970", "linked_nts": [ "///2/969", "///2/971" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,k-turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 99.956, "beta": 167.386, "gamma": 56.628, "delta": 146.972, "epsilon": -124.807, "zeta": -17.261, "epsilon_zeta": -107.547, "bb_type": "--", "chi": -138.859, "glyco_bond": "anti", "C5prime_xyz": [ -1.849, 8.767, -0.186 ], "P_xyz": [ 0.502, 9.245, 0.886 ], "form": ".", "ssZp": 1.387, "Dp": 1.451, "splay_angle": 108.723, "splay_distance": 15.789, "splay_ratio": 0.813, "d22": null, "d64": null, "eta": 9.350, "theta": -14.207, "eta_prime": 47.828, "theta_prime": -31.544, "eta_base": 104.955, "theta_base": -14.947, "v0": -21.340, "v1": 35.686, "v2": -35.618, "v3": 24.225, "v4": -2.008, "amplitude": 36.997, "phase_angle": 164.310, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.210, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 187.609, 274.975, 173.207 ], "x_axis": [ 0.378, 0.511, 0.772 ], "y_axis": [ -0.920, 0.298, 0.253 ], "z_axis": [ -0.100, -0.806, 0.583 ], "quaternion": [ 0.751, 0.353, -0.290, 0.476 ] } }, { "index": 818, "index_chain": 818, "chain_name": "2", "nt_resnum": 971, "nt_name": "G", "nt_code": "G", "nt_id": "///2/971", "linked_nts": [ "///2/970", "///2/972" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,splayed-apart", "alpha": -93.753, "beta": -151.196, "gamma": 65.228, "delta": 146.552, "epsilon": -131.312, "zeta": 145.286, "epsilon_zeta": 83.402, "bb_type": "BII", "chi": -112.437, "glyco_bond": "anti", "C5prime_xyz": [ -2.100, 8.430, -1.580 ], "P_xyz": [ 0.185, 9.506, -0.856 ], "form": ".", "ssZp": 1.564, "Dp": 1.592, "splay_angle": 61.659, "splay_distance": 9.561, "splay_ratio": 0.518, "d22": null, "d64": null, "eta": 168.008, "theta": 138.162, "eta_prime": -134.173, "theta_prime": 127.258, "eta_base": -120.308, "theta_base": 162.255, "v0": -21.956, "v1": 35.985, "v2": -35.503, "v3": 23.733, "v4": -1.301, "amplitude": 37.078, "phase_angle": 163.240, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 172.772, 275.716, 178.553 ], "x_axis": [ 0.037, 0.937, -0.348 ], "y_axis": [ 0.487, -0.321, -0.812 ], "z_axis": [ -0.873, -0.139, -0.468 ], "quaternion": [ -0.249, 0.676, 0.527, -0.451 ] } }, { "index": 819, "index_chain": 819, "chain_name": "2", "nt_resnum": 972, "nt_name": "A", "nt_code": "A", "nt_id": "///2/972", "linked_nts": [ "///2/971", "///2/973" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor", "alpha": -78.321, "beta": 152.104, "gamma": 45.638, "delta": 81.073, "epsilon": -122.482, "zeta": -69.203, "epsilon_zeta": -53.280, "bb_type": "--", "chi": 170.981, "glyco_bond": "--", "C5prime_xyz": [ -1.468, 8.066, 2.150 ], "P_xyz": [ 1.085, 7.920, 2.733 ], "form": ".", "ssZp": 4.816, "Dp": 4.807, "splay_angle": 33.499, "splay_distance": 4.959, "splay_ratio": 0.290, "d22": null, "d64": null, "eta": -178.551, "theta": -116.728, "eta_prime": 171.048, "theta_prime": -114.268, "eta_base": -170.062, "theta_base": -67.799, "v0": 5.979, "v1": -27.634, "v2": 37.622, "v3": -35.196, "v4": 18.432, "amplitude": 38.180, "phase_angle": 9.807, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.923, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 171.615, 266.508, 180.852 ], "x_axis": [ -0.577, 0.758, -0.305 ], "y_axis": [ 0.679, 0.238, -0.694 ], "z_axis": [ -0.454, -0.608, -0.652 ], "quaternion": [ -0.047, 0.458, 0.785, -0.414 ] } }, { "index": 820, "index_chain": 820, "chain_name": "2", "nt_resnum": 973, "nt_name": "C", "nt_code": "C", "nt_id": "///2/973", "linked_nts": [ "///2/972", "///2/974" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -66.999, "beta": 169.387, "gamma": 57.341, "delta": 81.755, "epsilon": -146.314, "zeta": -57.843, "epsilon_zeta": -88.471, "bb_type": "BI", "chi": -177.489, "glyco_bond": "anti", "C5prime_xyz": [ -1.197, 8.438, 1.557 ], "P_xyz": [ 1.395, 8.500, 1.973 ], "form": "A", "ssZp": 4.694, "Dp": 4.688, "splay_angle": 28.099, "splay_distance": 4.314, "splay_ratio": 0.246, "d22": 3.896, "d64": 4.101, "eta": 158.872, "theta": -127.172, "eta_prime": -176.328, "theta_prime": -126.344, "eta_base": -100.959, "theta_base": -87.282, "v0": 5.291, "v1": -26.906, "v2": 37.111, "v3": -35.052, "v4": 18.762, "amplitude": 37.770, "phase_angle": 10.718, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.618, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 168.195, 266.887, 177.282 ], "x_axis": [ 0.342, 0.619, -0.708 ], "y_axis": [ 0.868, -0.497, -0.015 ], "z_axis": [ -0.361, -0.609, -0.706 ], "quaternion": [ 0.186, 0.798, 0.466, -0.335 ] } }, { "index": 821, "index_chain": 821, "chain_name": "2", "nt_resnum": 974, "nt_name": "C", "nt_code": "C", "nt_id": "///2/974", "linked_nts": [ "///2/973", "///2/975" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -75.896, "beta": -178.250, "gamma": 58.605, "delta": 81.380, "epsilon": -155.324, "zeta": -67.483, "epsilon_zeta": -87.841, "bb_type": "BI", "chi": -172.028, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.602, 1.234 ], "P_xyz": [ 1.266, 8.841, 1.841 ], "form": "A", "ssZp": 4.577, "Dp": 4.597, "splay_angle": 22.665, "splay_distance": 3.614, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 164.128, "theta": -145.343, "eta_prime": -174.017, "theta_prime": -145.378, "eta_base": -110.427, "theta_base": -126.531, "v0": 3.294, "v1": -25.171, "v2": 36.266, "v3": -35.335, "v4": 20.212, "amplitude": 37.319, "phase_angle": 13.639, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.785, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 167.142, 266.688, 173.103 ], "x_axis": [ 0.899, 0.082, -0.431 ], "y_axis": [ 0.338, -0.756, 0.560 ], "z_axis": [ -0.280, -0.649, -0.708 ], "quaternion": [ 0.330, 0.917, 0.115, -0.194 ] } }, { "index": 822, "index_chain": 822, "chain_name": "2", "nt_resnum": 975, "nt_name": "G", "nt_code": "G", "nt_id": "///2/975", "linked_nts": [ "///2/974", "///2/976" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.042, "beta": -178.753, "gamma": 52.266, "delta": 79.092, "epsilon": -145.799, "zeta": -73.570, "epsilon_zeta": -72.229, "bb_type": "BI", "chi": -169.242, "glyco_bond": "anti", "C5prime_xyz": [ -1.510, 8.669, 1.046 ], "P_xyz": [ 0.991, 9.181, 1.634 ], "form": "A", "ssZp": 4.629, "Dp": 4.686, "splay_angle": 21.986, "splay_distance": 3.603, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 166.352, "theta": -146.512, "eta_prime": 177.556, "theta_prime": -144.257, "eta_base": -148.434, "theta_base": -121.295, "v0": 2.517, "v1": -25.395, "v2": 37.393, "v3": -36.982, "v4": 21.712, "amplitude": 38.707, "phase_angle": 14.974, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 165.789, 266.367, 169.767 ], "x_axis": [ 0.966, -0.255, -0.049 ], "y_axis": [ -0.151, -0.704, 0.694 ], "z_axis": [ -0.211, -0.663, -0.718 ], "quaternion": [ 0.369, 0.920, -0.110, -0.071 ] } }, { "index": 823, "index_chain": 823, "chain_name": "2", "nt_resnum": 976, "nt_name": "G", "nt_code": "G", "nt_id": "///2/976", "linked_nts": [ "///2/975", "///2/977" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.103, "beta": 175.050, "gamma": 51.029, "delta": 78.688, "epsilon": -152.359, "zeta": -76.653, "epsilon_zeta": -75.706, "bb_type": "BI", "chi": -165.074, "glyco_bond": "anti", "C5prime_xyz": [ -1.679, 8.781, 0.785 ], "P_xyz": [ 0.803, 9.484, 1.225 ], "form": "A", "ssZp": 4.515, "Dp": 4.603, "splay_angle": 25.176, "splay_distance": 4.002, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 166.098, "theta": -153.647, "eta_prime": 178.153, "theta_prime": -150.670, "eta_base": -145.732, "theta_base": -124.673, "v0": -0.125, "v1": -23.049, "v2": 36.146, "v3": -37.226, "v4": 23.546, "amplitude": 38.181, "phase_angle": 18.789, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.964, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 166.371, 265.598, 166.295 ], "x_axis": [ 0.772, -0.443, 0.455 ], "y_axis": [ -0.635, -0.524, 0.567 ], "z_axis": [ -0.012, -0.727, -0.686 ], "quaternion": [ 0.375, 0.864, -0.312, 0.128 ] } }, { "index": 824, "index_chain": 824, "chain_name": "2", "nt_resnum": 977, "nt_name": "C", "nt_code": "C", "nt_id": "///2/977", "linked_nts": [ "///2/976", "///2/978" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.029, "beta": 172.229, "gamma": 55.534, "delta": 80.327, "epsilon": -155.947, "zeta": -85.606, "epsilon_zeta": -70.341, "bb_type": "BI", "chi": -158.561, "glyco_bond": "anti", "C5prime_xyz": [ -1.381, 8.822, 0.431 ], "P_xyz": [ 1.197, 9.291, 0.518 ], "form": "A", "ssZp": 4.373, "Dp": 4.562, "splay_angle": 17.201, "splay_distance": 2.954, "splay_ratio": 0.157, "d22": null, "d64": null, "eta": 174.714, "theta": -129.227, "eta_prime": -173.289, "theta_prime": -139.507, "eta_base": -137.020, "theta_base": -118.904, "v0": 0.637, "v1": -23.001, "v2": 35.378, "v3": -35.984, "v4": 22.289, "amplitude": 37.125, "phase_angle": 17.646, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.926, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 167.943, 263.536, 163.248 ], "x_axis": [ 0.321, -0.651, 0.688 ], "y_axis": [ -0.947, -0.245, 0.209 ], "z_axis": [ 0.032, -0.718, -0.695 ], "quaternion": [ 0.309, 0.752, -0.531, 0.239 ] } }, { "index": 825, "index_chain": 825, "chain_name": "2", "nt_resnum": 978, "nt_name": "G", "nt_code": "G", "nt_id": "///2/978", "linked_nts": [ "///2/977", "///2/979" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 156.537, "beta": -152.442, "gamma": 163.354, "delta": 81.433, "epsilon": -147.451, "zeta": -71.389, "epsilon_zeta": -76.062, "bb_type": "BI", "chi": -171.188, "glyco_bond": "anti", "C5prime_xyz": [ -1.381, 8.600, 1.186 ], "P_xyz": [ 0.450, 9.864, -0.200 ], "form": "A", "ssZp": 4.622, "Dp": 4.658, "splay_angle": 25.897, "splay_distance": 4.135, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 149.941, "theta": -157.597, "eta_prime": 169.610, "theta_prime": -158.863, "eta_base": -148.001, "theta_base": -134.976, "v0": 3.592, "v1": -25.359, "v2": 36.282, "v3": -35.199, "v4": 19.935, "amplitude": 37.266, "phase_angle": 13.196, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.492, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 169.779, 261.538, 162.080 ], "x_axis": [ -0.191, -0.529, 0.827 ], "y_axis": [ -0.954, -0.100, -0.284 ], "z_axis": [ 0.233, -0.843, -0.485 ], "quaternion": [ -0.237, -0.590, 0.628, -0.449 ] } }, { "index": 826, "index_chain": 826, "chain_name": "2", "nt_resnum": 979, "nt_name": "C", "nt_code": "C", "nt_id": "///2/979", "linked_nts": [ "///2/978", "///2/980" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.394, "beta": 178.365, "gamma": 54.413, "delta": 79.583, "epsilon": -149.275, "zeta": -75.884, "epsilon_zeta": -73.391, "bb_type": "BI", "chi": -159.715, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.819, 0.493 ], "P_xyz": [ 1.146, 9.365, 0.747 ], "form": "A", "ssZp": 4.414, "Dp": 4.622, "splay_angle": 23.522, "splay_distance": 3.734, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 173.258, "theta": -150.037, "eta_prime": -173.698, "theta_prime": -148.621, "eta_base": -137.004, "theta_base": -123.161, "v0": 0.784, "v1": -23.538, "v2": 36.083, "v3": -36.617, "v4": 22.596, "amplitude": 37.822, "phase_angle": 17.442, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.984, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 172.220, 258.224, 161.680 ], "x_axis": [ -0.684, -0.493, 0.538 ], "y_axis": [ -0.684, 0.177, -0.707 ], "z_axis": [ 0.253, -0.852, -0.458 ], "quaternion": [ -0.094, -0.386, 0.761, -0.512 ] } }, { "index": 827, "index_chain": 827, "chain_name": "2", "nt_resnum": 980, "nt_name": "A", "nt_code": "A", "nt_id": "///2/980", "linked_nts": [ "///2/979", "///2/981" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.512, "beta": 172.740, "gamma": 48.988, "delta": 81.028, "epsilon": -153.381, "zeta": -79.151, "epsilon_zeta": -74.230, "bb_type": "BI", "chi": -168.596, "glyco_bond": "anti", "C5prime_xyz": [ -1.450, 8.656, 1.038 ], "P_xyz": [ 1.057, 9.065, 1.689 ], "form": "A", "ssZp": 4.519, "Dp": 4.568, "splay_angle": 22.232, "splay_distance": 3.436, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 165.943, "theta": -154.558, "eta_prime": 177.517, "theta_prime": -152.828, "eta_base": -144.019, "theta_base": -130.288, "v0": 1.095, "v1": -23.008, "v2": 34.939, "v3": -35.298, "v4": 21.576, "amplitude": 36.526, "phase_angle": 16.949, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.944, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 173.354, 254.679, 161.386 ], "x_axis": [ -0.972, -0.008, 0.236 ], "y_axis": [ -0.216, 0.437, -0.873 ], "z_axis": [ -0.096, -0.899, -0.426 ], "quaternion": [ -0.099, -0.067, 0.842, -0.526 ] } }, { "index": 828, "index_chain": 828, "chain_name": "2", "nt_resnum": 981, "nt_name": "A", "nt_code": "A", "nt_id": "///2/981", "linked_nts": [ "///2/980", "///2/982" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.847, "beta": 174.832, "gamma": 47.502, "delta": 82.216, "epsilon": -147.769, "zeta": -87.624, "epsilon_zeta": -60.145, "bb_type": "BI", "chi": -163.050, "glyco_bond": "anti", "C5prime_xyz": [ -1.069, 8.638, 0.744 ], "P_xyz": [ 1.500, 8.806, 1.245 ], "form": "A", "ssZp": 4.486, "Dp": 4.646, "splay_angle": 23.111, "splay_distance": 3.607, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 170.180, "theta": -156.583, "eta_prime": 178.850, "theta_prime": -155.350, "eta_base": -148.400, "theta_base": -144.386, "v0": 4.344, "v1": -25.555, "v2": 35.925, "v3": -34.386, "v4": 18.963, "amplitude": 36.724, "phase_angle": 11.975, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.888, "filter_rmsd": 0.043, "frame": { "rmsd": 0.011, "origin": [ 173.528, 251.249, 161.457 ], "x_axis": [ -0.929, 0.287, -0.232 ], "y_axis": [ 0.326, 0.340, -0.882 ], "z_axis": [ -0.174, -0.896, -0.409 ], "quaternion": [ 0.018, 0.187, 0.818, -0.543 ] } }, { "index": 829, "index_chain": 829, "chain_name": "2", "nt_resnum": 982, "nt_name": "G", "nt_code": "G", "nt_id": "///2/982", "linked_nts": [ "///2/981", "///2/983" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -56.015, "beta": 158.293, "gamma": 54.595, "delta": 81.123, "epsilon": -151.593, "zeta": -78.791, "epsilon_zeta": -72.802, "bb_type": "BI", "chi": -167.502, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.691, 0.966 ], "P_xyz": [ 1.221, 8.958, 1.011 ], "form": "A", "ssZp": 4.554, "Dp": 4.617, "splay_angle": 22.821, "splay_distance": 3.573, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 167.761, "theta": -150.201, "eta_prime": 178.679, "theta_prime": -152.458, "eta_base": -157.980, "theta_base": -136.285, "v0": 2.391, "v1": -24.416, "v2": 35.932, "v3": -35.519, "v4": 20.892, "amplitude": 37.197, "phase_angle": 14.987, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.723, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 173.262, 247.672, 161.846 ], "x_axis": [ -0.738, 0.450, -0.502 ], "y_axis": [ 0.623, 0.169, -0.764 ], "z_axis": [ -0.259, -0.877, -0.405 ], "quaternion": [ 0.080, 0.353, 0.760, -0.539 ] } }, { "index": 830, "index_chain": 830, "chain_name": "2", "nt_resnum": 983, "nt_name": "A", "nt_code": "A", "nt_id": "///2/983", "linked_nts": [ "///2/982", "///2/984" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -63.264, "beta": 164.593, "gamma": 59.620, "delta": 81.457, "epsilon": -141.610, "zeta": -67.220, "epsilon_zeta": -74.390, "bb_type": "BI", "chi": -172.618, "glyco_bond": "anti", "C5prime_xyz": [ -1.567, 8.585, 1.251 ], "P_xyz": [ 1.007, 9.000, 1.526 ], "form": "A", "ssZp": 4.596, "Dp": 4.639, "splay_angle": 25.731, "splay_distance": 4.060, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 171.029, "theta": -132.179, "eta_prime": -177.735, "theta_prime": -130.527, "eta_base": -146.187, "theta_base": -86.247, "v0": 1.191, "v1": -23.250, "v2": 35.182, "v3": -35.473, "v4": 21.634, "amplitude": 36.748, "phase_angle": 16.787, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.886, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 171.445, 244.599, 162.009 ], "x_axis": [ -0.363, 0.536, -0.762 ], "y_axis": [ 0.887, -0.050, -0.458 ], "z_axis": [ -0.284, -0.843, -0.458 ], "quaternion": [ 0.180, 0.535, 0.665, -0.489 ] } }, { "index": 831, "index_chain": 831, "chain_name": "2", "nt_resnum": 984, "nt_name": "C", "nt_code": "C", "nt_id": "///2/984", "linked_nts": [ "///2/983", "///2/985" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -62.885, "beta": 164.642, "gamma": 59.758, "delta": 82.821, "epsilon": -146.155, "zeta": -94.588, "epsilon_zeta": -51.567, "bb_type": "BI", "chi": -166.208, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.774, 0.883 ], "P_xyz": [ 1.010, 9.195, 1.118 ], "form": ".", "ssZp": 4.410, "Dp": 4.520, "splay_angle": 25.344, "splay_distance": 3.928, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 167.737, "theta": -158.670, "eta_prime": -169.571, "theta_prime": -150.414, "eta_base": -104.286, "theta_base": -126.074, "v0": -0.612, "v1": -20.825, "v2": 33.056, "v3": -34.332, "v4": 22.053, "amplitude": 35.084, "phase_angle": 19.573, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 169.294, 243.372, 158.792 ], "x_axis": [ 0.411, 0.342, -0.845 ], "y_axis": [ 0.856, -0.462, 0.230 ], "z_axis": [ -0.312, -0.818, -0.483 ], "quaternion": [ 0.341, 0.768, 0.390, -0.377 ] } }, { "index": 832, "index_chain": 832, "chain_name": "2", "nt_resnum": 985, "nt_name": "G", "nt_code": "G", "nt_id": "///2/985", "linked_nts": [ "///2/984", "///2/986" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -51.945, "beta": 154.721, "gamma": 76.423, "delta": 148.638, "epsilon": -116.183, "zeta": 139.100, "epsilon_zeta": 104.716, "bb_type": "BII", "chi": -140.473, "glyco_bond": "anti", "C5prime_xyz": [ -1.560, 8.741, -0.058 ], "P_xyz": [ 1.041, 8.696, 0.309 ], "form": ".", "ssZp": 1.189, "Dp": 1.233, "splay_angle": 80.429, "splay_distance": 12.684, "splay_ratio": 0.646, "d22": null, "d64": null, "eta": -160.530, "theta": 131.629, "eta_prime": -130.576, "theta_prime": 118.417, "eta_base": -109.432, "theta_base": 142.441, "v0": -19.329, "v1": 34.394, "v2": -35.532, "v3": 25.292, "v4": -3.963, "amplitude": 36.411, "phase_angle": 167.388, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.296, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 167.300, 240.647, 156.785 ], "x_axis": [ 0.818, 0.132, -0.560 ], "y_axis": [ 0.514, -0.607, 0.606 ], "z_axis": [ -0.260, -0.784, -0.564 ], "quaternion": [ 0.402, 0.864, 0.187, -0.237 ] } }, { "index": 833, "index_chain": 833, "chain_name": "2", "nt_resnum": 986, "nt_name": "G", "nt_code": "G", "nt_id": "///2/986", "linked_nts": [ "///2/985", "///2/987" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -90.765, "beta": -177.509, "gamma": 52.516, "delta": 85.357, "epsilon": -135.956, "zeta": -74.011, "epsilon_zeta": -61.945, "bb_type": "BI", "chi": -164.470, "glyco_bond": "anti", "C5prime_xyz": [ -1.612, 8.811, 0.796 ], "P_xyz": [ 0.768, 9.364, 1.759 ], "form": "B", "ssZp": 4.219, "Dp": 4.412, "splay_angle": 24.645, "splay_distance": 3.970, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": -158.225, "theta": -133.437, "eta_prime": -174.823, "theta_prime": -129.671, "eta_base": -178.837, "theta_base": -79.985, "v0": -2.935, "v1": -17.250, "v2": 29.588, "v3": -32.146, "v4": 22.150, "amplitude": 32.314, "phase_angle": 23.703, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.523, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 160.079, 240.829, 167.212 ], "x_axis": [ -0.166, 0.151, -0.974 ], "y_axis": [ 0.779, -0.585, -0.224 ], "z_axis": [ -0.604, -0.797, -0.020 ], "quaternion": [ -0.239, -0.600, -0.388, 0.658 ] } }, { "index": 834, "index_chain": 834, "chain_name": "2", "nt_resnum": 987, "nt_name": "A", "nt_code": "A", "nt_id": "///2/987", "linked_nts": [ "///2/986", "///2/988" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -62.172, "beta": 162.838, "gamma": 50.927, "delta": 82.398, "epsilon": -107.248, "zeta": -58.346, "epsilon_zeta": -48.902, "bb_type": "--", "chi": -151.872, "glyco_bond": "anti", "C5prime_xyz": [ -1.352, 8.742, 0.035 ], "P_xyz": [ 1.240, 9.065, -0.178 ], "form": ".", "ssZp": 3.770, "Dp": 4.711, "splay_angle": 36.039, "splay_distance": 5.898, "splay_ratio": 0.310, "d22": null, "d64": null, "eta": 169.193, "theta": -93.344, "eta_prime": -173.564, "theta_prime": -92.267, "eta_base": -113.215, "theta_base": -49.451, "v0": 2.212, "v1": -23.701, "v2": 34.932, "v3": -34.650, "v4": 20.480, "amplitude": 36.199, "phase_angle": 15.203, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.857, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 158.098, 238.157, 165.044 ], "x_axis": [ 0.480, -0.309, -0.821 ], "y_axis": [ 0.574, -0.597, 0.561 ], "z_axis": [ -0.663, -0.741, -0.109 ], "quaternion": [ 0.440, 0.739, 0.090, -0.502 ] } }, { "index": 835, "index_chain": 835, "chain_name": "2", "nt_resnum": 988, "nt_name": "C", "nt_code": "C", "nt_id": "///2/988", "linked_nts": [ "///2/987", "///2/989" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -78.226, "beta": -178.423, "gamma": 51.848, "delta": 82.220, "epsilon": -155.033, "zeta": 57.668, "epsilon_zeta": 147.299, "bb_type": "--", "chi": -133.917, "glyco_bond": "anti", "C5prime_xyz": [ -1.498, 8.702, -1.034 ], "P_xyz": [ 1.036, 9.258, -1.414 ], "form": ".", "ssZp": 3.410, "Dp": 4.521, "splay_angle": 29.609, "splay_distance": 4.795, "splay_ratio": 0.258, "d22": 3.716, "d64": 4.173, "eta": 143.690, "theta": -19.098, "eta_prime": 175.757, "theta_prime": -63.167, "eta_base": -123.086, "theta_base": -97.358, "v0": -0.024, "v1": -21.513, "v2": 33.600, "v3": -34.559, "v4": 21.842, "amplitude": 35.463, "phase_angle": 18.656, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.209, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 161.425, 233.970, 162.557 ], "x_axis": [ 0.940, 0.029, 0.340 ], "y_axis": [ -0.288, -0.467, 0.836 ], "z_axis": [ 0.183, -0.884, -0.431 ], "quaternion": [ 0.510, 0.842, -0.077, 0.155 ] } }, { "index": 836, "index_chain": 836, "chain_name": "2", "nt_resnum": 989, "nt_name": "C", "nt_code": "C", "nt_id": "///2/989", "linked_nts": [ "///2/988", "///2/990" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,phosphate", "alpha": 157.211, "beta": 143.704, "gamma": 57.725, "delta": 145.634, "epsilon": -96.369, "zeta": 57.547, "epsilon_zeta": 206.084, "bb_type": "--", "chi": -139.202, "glyco_bond": "anti", "C5prime_xyz": [ -1.851, 8.791, -0.223 ], "P_xyz": [ 0.680, 8.921, 0.440 ], "form": "Z", "ssZp": 0.830, "Dp": 0.843, "splay_angle": 39.947, "splay_distance": 6.509, "splay_ratio": 0.381, "d22": null, "d64": null, "eta": 53.923, "theta": 97.656, "eta_prime": 124.193, "theta_prime": 60.916, "eta_base": 129.479, "theta_base": 74.907, "v0": -22.642, "v1": 36.284, "v2": -35.284, "v3": 23.129, "v4": -0.528, "amplitude": 37.098, "phase_angle": 162.007, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.865, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 164.478, 230.338, 163.251 ], "x_axis": [ -0.666, 0.210, -0.716 ], "y_axis": [ -0.715, -0.455, 0.531 ], "z_axis": [ -0.214, 0.865, 0.453 ], "quaternion": [ 0.288, -0.290, 0.435, 0.802 ] } }, { "index": 837, "index_chain": 837, "chain_name": "2", "nt_resnum": 990, "nt_name": "A", "nt_code": "A", "nt_id": "///2/990", "linked_nts": [ "///2/989", "///2/991" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 102.597, "beta": -175.725, "gamma": 179.324, "delta": 146.999, "epsilon": -100.452, "zeta": -71.389, "epsilon_zeta": -29.063, "bb_type": "--", "chi": 64.224, "glyco_bond": "syn", "C5prime_xyz": [ -5.270, 4.010, 1.428 ], "P_xyz": [ -5.581, 2.424, 3.499 ], "form": ".", "ssZp": -0.849, "Dp": 0.912, "splay_angle": 135.852, "splay_distance": 17.120, "splay_ratio": 0.927, "d22": null, "d64": null, "eta": -172.757, "theta": -110.470, "eta_prime": 177.399, "theta_prime": -111.177, "eta_base": -173.485, "theta_base": -140.601, "v0": -21.523, "v1": 35.709, "v2": -35.466, "v3": 23.984, "v4": -1.747, "amplitude": 36.913, "phase_angle": 163.902, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 163.457, 224.318, 165.503 ], "x_axis": [ -0.471, -0.009, -0.882 ], "y_axis": [ -0.757, -0.509, 0.410 ], "z_axis": [ -0.452, 0.861, 0.233 ], "quaternion": [ 0.251, -0.448, 0.427, 0.744 ] } }, { "index": 838, "index_chain": 838, "chain_name": "2", "nt_resnum": 991, "nt_name": "G", "nt_code": "G", "nt_id": "///2/991", "linked_nts": [ "///2/990", "///2/992" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BII,junction-loop,splayed-apart", "alpha": -69.902, "beta": 152.430, "gamma": 174.604, "delta": 82.164, "epsilon": -111.800, "zeta": 161.170, "epsilon_zeta": 87.030, "bb_type": "BII", "chi": 54.592, "glyco_bond": "syn", "C5prime_xyz": [ -5.330, 3.940, 1.498 ], "P_xyz": [ -6.466, 3.857, 3.861 ], "form": ".", "ssZp": -2.198, "Dp": 4.558, "splay_angle": 135.512, "splay_distance": 17.013, "splay_ratio": 0.927, "d22": null, "d64": null, "eta": -91.545, "theta": 86.892, "eta_prime": -59.819, "theta_prime": 77.341, "eta_base": -36.453, "theta_base": 55.165, "v0": -2.376, "v1": -19.491, "v2": 32.587, "v3": -34.898, "v4": 23.513, "amplitude": 35.241, "phase_angle": 22.380, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "2h", "suiteness": 0.699, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 162.411, 212.129, 177.480 ], "x_axis": [ 0.638, -0.431, 0.638 ], "y_axis": [ 0.764, 0.454, -0.458 ], "z_axis": [ -0.092, 0.780, 0.619 ], "quaternion": [ 0.823, -0.376, -0.222, -0.363 ] } }, { "index": 839, "index_chain": 839, "chain_name": "2", "nt_resnum": 992, "nt_name": "A", "nt_code": "A", "nt_id": "///2/992", "linked_nts": [ "///2/991", "///2/993" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": 54.814, "beta": -175.612, "gamma": -179.478, "delta": 80.683, "epsilon": -147.376, "zeta": -75.467, "epsilon_zeta": -71.909, "bb_type": "BI", "chi": -179.855, "glyco_bond": "anti", "C5prime_xyz": [ -1.506, 8.378, 1.661 ], "P_xyz": [ -0.229, 10.543, 0.911 ], "form": ".", "ssZp": 4.669, "Dp": 4.672, "splay_angle": 29.099, "splay_distance": 4.550, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 107.920, "theta": -179.551, "eta_prime": 101.779, "theta_prime": -170.643, "eta_base": 132.697, "theta_base": -145.446, "v0": 3.686, "v1": -25.909, "v2": 37.081, "v3": -35.952, "v4": 20.328, "amplitude": 38.081, "phase_angle": 13.160, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 165.608, 222.347, 164.258 ], "x_axis": [ 0.689, 0.192, 0.699 ], "y_axis": [ -0.451, -0.642, 0.620 ], "z_axis": [ 0.568, -0.742, -0.356 ], "quaternion": [ 0.416, 0.820, -0.079, 0.386 ] } }, { "index": 840, "index_chain": 840, "chain_name": "2", "nt_resnum": 993, "nt_name": "G", "nt_code": "G", "nt_id": "///2/993", "linked_nts": [ "///2/992", "///2/994" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate", "alpha": -62.087, "beta": -175.824, "gamma": 53.482, "delta": 80.924, "epsilon": -151.008, "zeta": -76.160, "epsilon_zeta": -74.847, "bb_type": "BI", "chi": -164.928, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.732, 0.822 ], "P_xyz": [ 1.136, 9.173, 1.429 ], "form": "A", "ssZp": 4.511, "Dp": 4.612, "splay_angle": 24.821, "splay_distance": 3.891, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 177.592, "theta": -150.807, "eta_prime": -173.133, "theta_prime": -147.911, "eta_base": -144.733, "theta_base": -121.920, "v0": 2.075, "v1": -24.125, "v2": 35.759, "v3": -35.575, "v4": 21.125, "amplitude": 37.107, "phase_angle": 15.490, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.941, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 169.029, 221.336, 161.434 ], "x_axis": [ 0.355, -0.150, 0.923 ], "y_axis": [ -0.765, -0.614, 0.195 ], "z_axis": [ 0.537, -0.775, -0.333 ], "quaternion": [ 0.320, 0.759, -0.302, 0.481 ] } }, { "index": 841, "index_chain": 841, "chain_name": "2", "nt_resnum": 994, "nt_name": "C", "nt_code": "C", "nt_id": "///2/994", "linked_nts": [ "///2/993", "///2/995" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -61.249, "beta": 171.240, "gamma": 54.516, "delta": 79.929, "epsilon": -144.932, "zeta": -73.398, "epsilon_zeta": -71.534, "bb_type": "BI", "chi": -162.797, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.730, 0.686 ], "P_xyz": [ 1.340, 9.064, 0.785 ], "form": "A", "ssZp": 4.514, "Dp": 4.689, "splay_angle": 24.460, "splay_distance": 3.890, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 171.165, "theta": -143.108, "eta_prime": -177.148, "theta_prime": -141.635, "eta_base": -139.666, "theta_base": -115.885, "v0": 3.250, "v1": -25.705, "v2": 37.180, "v3": -36.305, "v4": 20.832, "amplitude": 38.291, "phase_angle": 13.836, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.968, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 172.253, 219.380, 160.477 ], "x_axis": [ -0.112, -0.437, 0.893 ], "y_axis": [ -0.826, -0.458, -0.328 ], "z_axis": [ 0.552, -0.774, -0.310 ], "quaternion": [ 0.173, 0.643, -0.491, 0.561 ] } }, { "index": 842, "index_chain": 842, "chain_name": "2", "nt_resnum": 995, "nt_name": "G", "nt_code": "G", "nt_id": "///2/995", "linked_nts": [ "///2/994", "///2/996" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": -62.535, "beta": 171.762, "gamma": 55.391, "delta": 79.326, "epsilon": -130.451, "zeta": -61.436, "epsilon_zeta": -69.014, "bb_type": "BI", "chi": -160.764, "glyco_bond": "anti", "C5prime_xyz": [ -1.420, 8.775, 0.548 ], "P_xyz": [ 1.150, 9.279, 0.557 ], "form": ".", "ssZp": 4.396, "Dp": 4.747, "splay_angle": 73.807, "splay_distance": 10.856, "splay_ratio": 0.600, "d22": null, "d64": null, "eta": 172.183, "theta": -100.859, "eta_prime": -175.671, "theta_prime": -146.510, "eta_base": -137.289, "theta_base": 156.983, "v0": 2.322, "v1": -25.139, "v2": 37.142, "v3": -36.824, "v4": 21.758, "amplitude": 38.494, "phase_angle": 15.230, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.978, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 175.047, 216.735, 161.055 ], "x_axis": [ -0.612, -0.511, 0.603 ], "y_axis": [ -0.592, -0.208, -0.778 ], "z_axis": [ 0.524, -0.834, -0.175 ], "quaternion": [ 0.031, 0.439, -0.628, 0.641 ] } }, { "index": 843, "index_chain": 843, "chain_name": "2", "nt_resnum": 996, "nt_name": "A", "nt_code": "A", "nt_id": "///2/996", "linked_nts": [ "///2/995", "///2/997" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,phosphate", "alpha": 161.410, "beta": 150.617, "gamma": 55.103, "delta": 82.400, "epsilon": -138.214, "zeta": -81.576, "epsilon_zeta": -56.638, "bb_type": "BI", "chi": -175.150, "glyco_bond": "anti", "C5prime_xyz": [ -1.641, 8.552, 1.392 ], "P_xyz": [ 0.953, 8.821, 1.656 ], "form": "A", "ssZp": 4.561, "Dp": 4.602, "splay_angle": 22.256, "splay_distance": 3.446, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 8.755, "theta": -141.380, "eta_prime": 42.323, "theta_prime": -142.708, "eta_base": 25.193, "theta_base": -111.793, "v0": 0.100, "v1": -21.717, "v2": 33.776, "v3": -34.693, "v4": 21.835, "amplitude": 35.610, "phase_angle": 18.465, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.856, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 182.658, 216.234, 153.330 ], "x_axis": [ -0.308, 0.539, -0.784 ], "y_axis": [ -0.817, -0.572, -0.072 ], "z_axis": [ -0.488, 0.618, 0.616 ], "quaternion": [ 0.429, -0.402, 0.173, 0.790 ] } }, { "index": 844, "index_chain": 844, "chain_name": "2", "nt_resnum": 997, "nt_name": "A", "nt_code": "A", "nt_id": "///2/997", "linked_nts": [ "///2/996", "///2/998" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,cap-donor,phosphate", "alpha": -68.774, "beta": 163.151, "gamma": 59.340, "delta": 82.335, "epsilon": -147.526, "zeta": -68.403, "epsilon_zeta": -79.123, "bb_type": "BI", "chi": -168.506, "glyco_bond": "anti", "C5prime_xyz": [ -1.383, 8.593, 1.032 ], "P_xyz": [ 1.228, 8.869, 1.074 ], "form": "A", "ssZp": 4.573, "Dp": 4.639, "splay_angle": 24.316, "splay_distance": 3.776, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 162.045, "theta": -137.377, "eta_prime": 177.451, "theta_prime": -138.695, "eta_base": -132.772, "theta_base": -105.031, "v0": 3.193, "v1": -24.681, "v2": 35.592, "v3": -34.714, "v4": 19.897, "amplitude": 36.637, "phase_angle": 13.717, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.831, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 181.795, 219.262, 154.731 ], "x_axis": [ -0.738, 0.049, -0.673 ], "y_axis": [ -0.467, -0.757, 0.457 ], "z_axis": [ -0.487, 0.651, 0.582 ], "quaternion": [ 0.147, -0.331, 0.316, 0.877 ] } }, { "index": 845, "index_chain": 845, "chain_name": "2", "nt_resnum": 998, "nt_name": "A", "nt_code": "A", "nt_id": "///2/998", "linked_nts": [ "///2/997", "///2/999" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -70.344, "beta": 168.805, "gamma": 61.171, "delta": 81.065, "epsilon": -130.515, "zeta": -30.442, "epsilon_zeta": -100.073, "bb_type": "--", "chi": -169.660, "glyco_bond": "anti", "C5prime_xyz": [ -1.400, 8.586, 1.081 ], "P_xyz": [ 1.195, 8.964, 1.162 ], "form": ".", "ssZp": 4.629, "Dp": 4.749, "splay_angle": 60.832, "splay_distance": 9.206, "splay_ratio": 0.507, "d22": null, "d64": null, "eta": 168.680, "theta": -91.458, "eta_prime": -175.206, "theta_prime": -82.600, "eta_base": -122.433, "theta_base": -52.386, "v0": 3.348, "v1": -25.466, "v2": 36.700, "v3": -35.763, "v4": 20.443, "amplitude": 37.764, "phase_angle": 13.632, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.876, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 179.439, 222.188, 155.113 ], "x_axis": [ -0.855, -0.463, -0.235 ], "y_axis": [ 0.107, -0.600, 0.793 ], "z_axis": [ -0.508, 0.652, 0.563 ], "quaternion": [ -0.164, -0.214, 0.416, 0.869 ] } }, { "index": 846, "index_chain": 846, "chain_name": "2", "nt_resnum": 999, "nt_name": "G", "nt_code": "G", "nt_id": "///2/999", "linked_nts": [ "///2/998", "///2/1000" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate", "alpha": -83.959, "beta": 168.006, "gamma": 89.971, "delta": 81.756, "epsilon": -154.649, "zeta": -72.700, "epsilon_zeta": -81.949, "bb_type": "BI", "chi": -161.489, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.754, 0.610 ], "P_xyz": [ 1.035, 9.296, -0.288 ], "form": "A", "ssZp": 4.458, "Dp": 4.595, "splay_angle": 25.272, "splay_distance": 3.997, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 170.985, "theta": -149.756, "eta_prime": -141.154, "theta_prime": -153.472, "eta_base": -72.129, "theta_base": -132.051, "v0": 2.637, "v1": -24.568, "v2": 35.932, "v3": -35.386, "v4": 20.660, "amplitude": 37.134, "phase_angle": 14.616, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 172.380, 219.038, 160.113 ], "x_axis": [ -0.106, -0.443, 0.890 ], "y_axis": [ 0.844, 0.433, 0.315 ], "z_axis": [ -0.525, 0.785, 0.328 ], "quaternion": [ 0.643, -0.182, -0.550, -0.500 ] } }, { "index": 847, "index_chain": 847, "chain_name": "2", "nt_resnum": 1000, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1000", "linked_nts": [ "///2/999", "///2/1001" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate", "alpha": -64.554, "beta": 173.646, "gamma": 59.920, "delta": 81.370, "epsilon": -128.527, "zeta": -105.156, "epsilon_zeta": -23.370, "bb_type": "--", "chi": -158.273, "glyco_bond": "anti", "C5prime_xyz": [ -1.317, 8.803, 0.415 ], "P_xyz": [ 1.277, 9.207, 0.403 ], "form": ".", "ssZp": 4.267, "Dp": 4.692, "splay_angle": 46.088, "splay_distance": 7.267, "splay_ratio": 0.391, "d22": null, "d64": null, "eta": 179.167, "theta": -163.260, "eta_prime": -170.461, "theta_prime": -145.806, "eta_base": -137.276, "theta_base": -139.457, "v0": 1.258, "v1": -23.189, "v2": 35.055, "v3": -35.319, "v4": 21.491, "amplitude": 36.598, "phase_angle": 16.697, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.908, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 169.167, 220.960, 161.513 ], "x_axis": [ 0.356, -0.160, 0.921 ], "y_axis": [ 0.751, 0.635, -0.180 ], "z_axis": [ -0.556, 0.756, 0.346 ], "quaternion": [ 0.764, -0.306, -0.483, -0.298 ] } }, { "index": 848, "index_chain": 848, "chain_name": "2", "nt_resnum": 1001, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1001", "linked_nts": [ "///2/1000", "///2/1002" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -49.438, "beta": -172.515, "gamma": 67.251, "delta": 146.473, "epsilon": -119.014, "zeta": -109.004, "epsilon_zeta": -10.010, "bb_type": "--", "chi": -102.529, "glyco_bond": "anti", "C5prime_xyz": [ -2.318, 8.117, -2.029 ], "P_xyz": [ 0.146, 9.005, -2.189 ], "form": ".", "ssZp": 1.240, "Dp": 1.351, "splay_angle": 161.495, "splay_distance": 18.217, "splay_ratio": 0.987, "d22": null, "d64": null, "eta": -140.727, "theta": -131.744, "eta_prime": -131.342, "theta_prime": -154.011, "eta_base": -143.338, "theta_base": -170.551, "v0": -22.238, "v1": 36.122, "v2": -35.443, "v3": 23.509, "v4": -0.996, "amplitude": 37.111, "phase_angle": 162.758, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.264, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 164.326, 226.036, 163.412 ], "x_axis": [ 0.579, -0.291, 0.761 ], "y_axis": [ 0.738, 0.583, -0.339 ], "z_axis": [ -0.345, 0.758, 0.553 ], "quaternion": [ 0.824, -0.333, -0.336, -0.313 ] } }, { "index": 849, "index_chain": 849, "chain_name": "2", "nt_resnum": 1002, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1002", "linked_nts": [ "///2/1001", "///2/1003" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -52.525, "beta": -115.160, "gamma": 77.573, "delta": 81.846, "epsilon": -152.988, "zeta": -80.029, "epsilon_zeta": -72.960, "bb_type": "BI", "chi": -165.522, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.631, 0.863 ], "P_xyz": [ 1.070, 8.058, 1.770 ], "form": ".", "ssZp": 4.541, "Dp": 4.622, "splay_angle": 27.870, "splay_distance": 4.393, "splay_ratio": 0.243, "d22": 5.003, "d64": 5.214, "eta": -81.487, "theta": -144.092, "eta_prime": -75.013, "theta_prime": -144.008, "eta_base": -41.479, "theta_base": -138.548, "v0": 3.768, "v1": -25.443, "v2": 36.270, "v3": -35.090, "v4": 19.741, "amplitude": 37.213, "phase_angle": 12.926, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 166.189, 240.230, 152.146 ], "x_axis": [ 0.976, -0.171, -0.132 ], "y_axis": [ -0.013, -0.654, 0.757 ], "z_axis": [ -0.216, -0.737, -0.641 ], "quaternion": [ 0.413, 0.904, -0.051, -0.096 ] } }, { "index": 850, "index_chain": 850, "chain_name": "2", "nt_resnum": 1003, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1003", "linked_nts": [ "///2/1002", "///2/1004" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -65.788, "beta": -179.822, "gamma": 53.805, "delta": 81.402, "epsilon": -145.129, "zeta": -68.274, "epsilon_zeta": -76.855, "bb_type": "BI", "chi": -162.875, "glyco_bond": "anti", "C5prime_xyz": [ -1.454, 8.714, 0.696 ], "P_xyz": [ 1.078, 9.216, 1.151 ], "form": ".", "ssZp": 4.469, "Dp": 4.632, "splay_angle": 28.666, "splay_distance": 4.484, "splay_ratio": 0.248, "d22": 4.165, "d64": 4.297, "eta": 174.269, "theta": -137.812, "eta_prime": 179.814, "theta_prime": -133.569, "eta_base": -163.315, "theta_base": -93.294, "v0": 1.612, "v1": -23.559, "v2": 35.283, "v3": -35.322, "v4": 21.276, "amplitude": 36.731, "phase_angle": 16.141, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 164.637, 239.142, 148.183 ], "x_axis": [ 0.927, -0.255, 0.274 ], "y_axis": [ -0.372, -0.539, 0.756 ], "z_axis": [ -0.045, -0.803, -0.595 ], "quaternion": [ 0.445, 0.875, -0.179, 0.065 ] } }, { "index": 851, "index_chain": 851, "chain_name": "2", "nt_resnum": 1004, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1004", "linked_nts": [ "///2/1003", "///2/1005" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -62.730, "beta": 168.036, "gamma": 59.537, "delta": 81.007, "epsilon": -149.641, "zeta": -76.162, "epsilon_zeta": -73.479, "bb_type": "BI", "chi": -160.343, "glyco_bond": "anti", "C5prime_xyz": [ -1.336, 8.719, 0.553 ], "P_xyz": [ 1.265, 9.062, 0.445 ], "form": "A", "ssZp": 4.437, "Dp": 4.634, "splay_angle": 27.438, "splay_distance": 4.289, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 169.530, "theta": -147.596, "eta_prime": -169.798, "theta_prime": -148.820, "eta_base": -112.675, "theta_base": -125.499, "v0": 2.727, "v1": -24.701, "v2": 36.096, "v3": -35.496, "v4": 20.683, "amplitude": 37.286, "phase_angle": 14.510, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 166.843, 235.610, 146.520 ], "x_axis": [ 0.395, -0.547, 0.738 ], "y_axis": [ -0.919, -0.230, 0.321 ], "z_axis": [ -0.006, -0.805, -0.594 ], "quaternion": [ 0.378, 0.745, -0.492, 0.246 ] } }, { "index": 852, "index_chain": 852, "chain_name": "2", "nt_resnum": 1005, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1005", "linked_nts": [ "///2/1004", "///2/1006" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -61.471, "beta": 174.987, "gamma": 47.102, "delta": 80.584, "epsilon": -143.200, "zeta": -81.672, "epsilon_zeta": -61.528, "bb_type": "BI", "chi": -177.509, "glyco_bond": "anti", "C5prime_xyz": [ -1.484, 8.501, 1.545 ], "P_xyz": [ 0.959, 8.766, 2.456 ], "form": "A", "ssZp": 4.676, "Dp": 4.678, "splay_angle": 24.137, "splay_distance": 3.753, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 167.422, "theta": -149.648, "eta_prime": 176.947, "theta_prime": -145.459, "eta_base": -145.169, "theta_base": -120.534, "v0": 2.800, "v1": -24.844, "v2": 36.238, "v3": -35.645, "v4": 20.714, "amplitude": 37.420, "phase_angle": 14.438, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.909, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 168.252, 232.233, 144.282 ], "x_axis": [ -0.112, -0.214, 0.970 ], "y_axis": [ -0.967, 0.250, -0.056 ], "z_axis": [ -0.231, -0.944, -0.235 ], "quaternion": [ -0.475, -0.467, 0.632, -0.396 ] } }, { "index": 853, "index_chain": 853, "chain_name": "2", "nt_resnum": 1006, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1006", "linked_nts": [ "///2/1005", "///2/1007" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.774, "beta": 169.010, "gamma": 54.033, "delta": 82.168, "epsilon": -156.176, "zeta": -68.588, "epsilon_zeta": -87.587, "bb_type": "BI", "chi": -170.253, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.665, 1.140 ], "P_xyz": [ 1.170, 8.945, 1.649 ], "form": "A", "ssZp": 4.493, "Dp": 4.533, "splay_angle": 21.736, "splay_distance": 3.465, "splay_ratio": 0.191, "d22": 4.568, "d64": 4.407, "eta": 171.003, "theta": -145.103, "eta_prime": -176.064, "theta_prime": -145.584, "eta_base": -138.872, "theta_base": -124.568, "v0": 1.474, "v1": -23.031, "v2": 34.600, "v3": -34.699, "v4": 20.956, "amplitude": 36.050, "phase_angle": 16.305, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.883, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 169.392, 228.670, 143.987 ], "x_axis": [ -0.603, 0.011, 0.798 ], "y_axis": [ -0.750, 0.334, -0.571 ], "z_axis": [ -0.273, -0.942, -0.193 ], "quaternion": [ -0.367, -0.253, 0.730, -0.519 ] } }, { "index": 854, "index_chain": 854, "chain_name": "2", "nt_resnum": 1007, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1007", "linked_nts": [ "///2/1006", "///2/1008" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -68.465, "beta": -173.446, "gamma": 46.297, "delta": 81.367, "epsilon": -145.080, "zeta": -84.012, "epsilon_zeta": -61.067, "bb_type": "BI", "chi": -159.073, "glyco_bond": "anti", "C5prime_xyz": [ -1.193, 8.774, 0.487 ], "P_xyz": [ 1.300, 9.185, 1.204 ], "form": "A", "ssZp": 4.363, "Dp": 4.631, "splay_angle": 21.877, "splay_distance": 3.448, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 168.778, "theta": -154.227, "eta_prime": 178.232, "theta_prime": -151.534, "eta_base": -148.182, "theta_base": -129.810, "v0": 2.301, "v1": -24.089, "v2": 35.553, "v3": -35.163, "v4": 20.722, "amplitude": 36.822, "phase_angle": 15.086, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.840, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 169.788, 225.290, 144.636 ], "x_axis": [ -0.884, 0.289, 0.367 ], "y_axis": [ -0.310, 0.224, -0.924 ], "z_axis": [ -0.349, -0.931, -0.108 ], "quaternion": [ -0.241, -0.007, 0.744, -0.623 ] } }, { "index": 855, "index_chain": 855, "chain_name": "2", "nt_resnum": 1008, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1008", "linked_nts": [ "///2/1007", "///2/1009" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.111, "beta": 155.573, "gamma": 56.422, "delta": 78.771, "epsilon": -147.727, "zeta": -79.473, "epsilon_zeta": -68.255, "bb_type": "BI", "chi": -167.793, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.626, 0.949 ], "P_xyz": [ 1.134, 8.988, 0.706 ], "form": ".", "ssZp": 4.627, "Dp": 4.698, "splay_angle": 28.864, "splay_distance": 4.560, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": 163.066, "theta": -149.049, "eta_prime": 176.279, "theta_prime": -149.740, "eta_base": -148.539, "theta_base": -136.137, "v0": 3.456, "v1": -26.408, "v2": 38.126, "v3": -37.147, "v4": 21.232, "amplitude": 39.236, "phase_angle": 13.659, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.764, "filter_rmsd": 0.036, "frame": { "rmsd": 0.004, "origin": [ 168.980, 222.006, 145.311 ], "x_axis": [ -0.908, 0.415, -0.053 ], "y_axis": [ 0.074, 0.033, -0.997 ], "z_axis": [ -0.411, -0.909, -0.060 ], "quaternion": [ -0.127, 0.173, 0.707, -0.674 ] } }, { "index": 856, "index_chain": 856, "chain_name": "2", "nt_resnum": 1009, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1009", "linked_nts": [ "///2/1008", "///2/1010" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -56.844, "beta": 165.755, "gamma": 63.579, "delta": 78.501, "epsilon": -151.077, "zeta": -74.524, "epsilon_zeta": -76.553, "bb_type": "BI", "chi": -168.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.661, 8.687, 0.985 ], "P_xyz": [ 0.873, 9.341, 0.936 ], "form": "A", "ssZp": 4.590, "Dp": 4.629, "splay_angle": 27.711, "splay_distance": 4.344, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 178.012, "theta": -149.681, "eta_prime": -169.553, "theta_prime": -148.924, "eta_base": -141.513, "theta_base": -122.991, "v0": 0.356, "v1": -23.685, "v2": 36.704, "v3": -37.495, "v4": 23.412, "amplitude": 38.609, "phase_angle": 18.074, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.760, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 166.884, 218.479, 147.302 ], "x_axis": [ -0.801, 0.380, -0.463 ], "y_axis": [ 0.455, -0.116, -0.883 ], "z_axis": [ -0.389, -0.918, -0.080 ], "quaternion": [ -0.028, -0.314, -0.664, 0.678 ] } }, { "index": 857, "index_chain": 857, "chain_name": "2", "nt_resnum": 1010, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1010", "linked_nts": [ "///2/1009", "///2/1011" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.062, "beta": 174.904, "gamma": 57.187, "delta": 80.101, "epsilon": -156.821, "zeta": -90.024, "epsilon_zeta": -66.797, "bb_type": "BI", "chi": -161.982, "glyco_bond": "anti", "C5prime_xyz": [ -1.353, 8.756, 0.630 ], "P_xyz": [ 1.229, 9.192, 0.738 ], "form": ".", "ssZp": 4.483, "Dp": 4.601, "splay_angle": 29.315, "splay_distance": 4.571, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": 174.444, "theta": -168.356, "eta_prime": -172.495, "theta_prime": -168.387, "eta_base": -132.875, "theta_base": -166.776, "v0": 2.614, "v1": -25.019, "v2": 36.694, "v3": -36.181, "v4": 21.152, "amplitude": 37.942, "phase_angle": 14.735, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.946, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 163.777, 215.522, 147.989 ], "x_axis": [ -0.410, 0.230, -0.883 ], "y_axis": [ 0.830, -0.307, -0.465 ], "z_axis": [ -0.378, -0.923, -0.065 ], "quaternion": [ -0.233, -0.491, -0.540, 0.642 ] } }, { "index": 858, "index_chain": 858, "chain_name": "2", "nt_resnum": 1011, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1011", "linked_nts": [ "///2/1010", "///2/1012" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -61.791, "beta": 171.444, "gamma": 53.214, "delta": 82.255, "epsilon": -141.387, "zeta": -74.616, "epsilon_zeta": -66.770, "bb_type": "BI", "chi": -169.890, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.618, 1.111 ], "P_xyz": [ 1.040, 8.994, 1.681 ], "form": "A", "ssZp": 4.540, "Dp": 4.617, "splay_angle": 24.231, "splay_distance": 3.742, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 174.253, "theta": -138.727, "eta_prime": 175.416, "theta_prime": -135.617, "eta_base": -178.688, "theta_base": -91.056, "v0": 1.209, "v1": -22.658, "v2": 34.244, "v3": -34.522, "v4": 21.030, "amplitude": 35.758, "phase_angle": 16.732, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.722, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 161.656, 212.556, 150.745 ], "x_axis": [ -0.098, 0.415, -0.904 ], "y_axis": [ 0.909, -0.332, -0.251 ], "z_axis": [ -0.404, -0.847, -0.345 ], "quaternion": [ 0.237, 0.628, 0.527, -0.521 ] } }, { "index": 859, "index_chain": 859, "chain_name": "2", "nt_resnum": 1012, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1012", "linked_nts": [ "///2/1011", "///2/1013" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -58.582, "beta": 164.545, "gamma": 52.267, "delta": 83.738, "epsilon": -137.111, "zeta": -88.127, "epsilon_zeta": -48.985, "bb_type": "BI", "chi": -162.010, "glyco_bond": "anti", "C5prime_xyz": [ -1.256, 8.644, 0.682 ], "P_xyz": [ 1.359, 8.816, 0.832 ], "form": "A", "ssZp": 4.423, "Dp": 4.665, "splay_angle": 25.366, "splay_distance": 3.964, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 168.132, "theta": -145.015, "eta_prime": -173.944, "theta_prime": -142.646, "eta_base": -113.499, "theta_base": -116.348, "v0": 3.677, "v1": -24.395, "v2": 34.686, "v3": -33.552, "v4": 18.859, "amplitude": 35.576, "phase_angle": 12.843, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.912, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 159.908, 210.717, 147.994 ], "x_axis": [ 0.588, 0.068, -0.806 ], "y_axis": [ 0.682, -0.578, 0.449 ], "z_axis": [ -0.435, -0.813, -0.386 ], "quaternion": [ 0.395, 0.799, 0.235, -0.388 ] } }, { "index": 860, "index_chain": 860, "chain_name": "2", "nt_resnum": 1013, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1013", "linked_nts": [ "///2/1012", "///2/1014" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -53.201, "beta": 153.576, "gamma": 58.439, "delta": 82.025, "epsilon": -135.937, "zeta": -64.333, "epsilon_zeta": -71.604, "bb_type": "BI", "chi": -159.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.708, 0.526 ], "P_xyz": [ 1.210, 8.912, 0.143 ], "form": "A", "ssZp": 4.374, "Dp": 4.686, "splay_angle": 29.371, "splay_distance": 4.820, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 172.455, "theta": -123.381, "eta_prime": -172.723, "theta_prime": -126.173, "eta_base": -133.291, "theta_base": -100.085, "v0": 2.637, "v1": -24.269, "v2": 35.470, "v3": -34.926, "v4": 20.366, "amplitude": 36.650, "phase_angle": 14.575, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.618, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 158.248, 208.154, 145.467 ], "x_axis": [ 0.866, -0.244, -0.436 ], "y_axis": [ 0.236, -0.570, 0.787 ], "z_axis": [ -0.440, -0.785, -0.436 ], "quaternion": [ 0.464, 0.847, -0.002, -0.259 ] } }, { "index": 861, "index_chain": 861, "chain_name": "2", "nt_resnum": 1014, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1014", "linked_nts": [ "///2/1013", "///2/1015" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -71.057, "beta": -169.171, "gamma": 40.104, "delta": 82.060, "epsilon": -145.298, "zeta": -76.006, "epsilon_zeta": -69.292, "bb_type": "BI", "chi": -162.516, "glyco_bond": "anti", "C5prime_xyz": [ -1.612, 8.811, 0.676 ], "P_xyz": [ 0.606, 9.561, 1.856 ], "form": "A", "ssZp": 4.365, "Dp": 4.530, "splay_angle": 23.139, "splay_distance": 3.699, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 158.591, "theta": -147.732, "eta_prime": 173.729, "theta_prime": -141.623, "eta_base": -142.561, "theta_base": -102.224, "v0": -1.364, "v1": -20.297, "v2": 32.964, "v3": -34.693, "v4": 22.747, "amplitude": 35.258, "phase_angle": 20.785, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.602, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 158.924, 204.738, 142.133 ], "x_axis": [ 0.885, 0.120, 0.451 ], "y_axis": [ -0.423, -0.199, 0.884 ], "z_axis": [ 0.196, -0.973, -0.126 ], "quaternion": [ 0.624, 0.743, -0.102, 0.217 ] } }, { "index": 862, "index_chain": 862, "chain_name": "2", "nt_resnum": 1015, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1015", "linked_nts": [ "///2/1014", "///2/1016" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart", "alpha": -57.969, "beta": 166.582, "gamma": 50.494, "delta": 80.824, "epsilon": -93.732, "zeta": -153.494, "epsilon_zeta": 59.761, "bb_type": "BII", "chi": -155.324, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.764, 0.239 ], "P_xyz": [ 1.135, 9.216, 0.202 ], "form": ".", "ssZp": 3.736, "Dp": 4.678, "splay_angle": 164.900, "splay_distance": 16.105, "splay_ratio": 0.992, "d22": 12.977, "d64": 14.695, "eta": -178.795, "theta": -159.958, "eta_prime": -168.127, "theta_prime": 166.937, "eta_base": -124.873, "theta_base": 105.746, "v0": 1.609, "v1": -23.837, "v2": 35.748, "v3": -35.814, "v4": 21.579, "amplitude": 37.224, "phase_angle": 16.192, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.926, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 161.062, 201.743, 141.763 ], "x_axis": [ 0.431, -0.007, 0.902 ], "y_axis": [ -0.857, -0.315, 0.408 ], "z_axis": [ 0.282, -0.949, -0.142 ], "quaternion": [ 0.493, 0.687, -0.314, 0.431 ] } }, { "index": 863, "index_chain": 863, "chain_name": "2", "nt_resnum": 1016, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1016", "linked_nts": [ "///2/1015", "///2/1017" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,internal-loop,phosphate,splayed-apart", "alpha": 76.315, "beta": -135.981, "gamma": 60.641, "delta": 142.595, "epsilon": -82.200, "zeta": -112.527, "epsilon_zeta": 30.327, "bb_type": "--", "chi": 59.225, "glyco_bond": "syn", "C5prime_xyz": [ -5.478, 4.260, 1.241 ], "P_xyz": [ -6.196, 2.117, -0.091 ], "form": ".", "ssZp": -0.520, "Dp": 0.530, "splay_angle": 137.320, "splay_distance": 17.696, "splay_ratio": 0.932, "d22": 11.369, "d64": 14.369, "eta": 23.311, "theta": -91.065, "eta_prime": 41.258, "theta_prime": -101.548, "eta_base": 63.697, "theta_base": -20.468, "v0": -24.749, "v1": 36.805, "v2": -34.141, "v3": 20.817, "v4": 2.269, "amplitude": 36.890, "phase_angle": 157.741, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.380, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 148.070, 192.229, 142.010 ], "x_axis": [ -0.729, -0.560, -0.393 ], "y_axis": [ 0.548, -0.136, -0.825 ], "z_axis": [ 0.409, -0.817, 0.406 ], "quaternion": [ -0.368, 0.006, -0.545, 0.754 ] } }, { "index": 864, "index_chain": 864, "chain_name": "2", "nt_resnum": 1017, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1017", "linked_nts": [ "///2/1016", "///2/1018" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": -77.931, "beta": -137.365, "gamma": 83.175, "delta": 81.481, "epsilon": -143.343, "zeta": -77.327, "epsilon_zeta": -66.016, "bb_type": "BI", "chi": -159.426, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.735, 0.482 ], "P_xyz": [ 1.152, 8.755, 0.844 ], "form": ".", "ssZp": 4.395, "Dp": 4.655, "splay_angle": 29.466, "splay_distance": 4.612, "splay_ratio": 0.254, "d22": 4.450, "d64": 4.552, "eta": -131.405, "theta": -137.717, "eta_prime": -115.151, "theta_prime": -135.601, "eta_base": -174.967, "theta_base": -106.483, "v0": 1.888, "v1": -23.908, "v2": 35.613, "v3": -35.499, "v4": 21.183, "amplitude": 37.000, "phase_angle": 15.737, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 162.923, 201.144, 138.397 ], "x_axis": [ -0.024, -0.308, 0.951 ], "y_axis": [ -0.770, -0.601, -0.214 ], "z_axis": [ 0.637, -0.738, -0.222 ], "quaternion": [ 0.195, 0.671, -0.402, 0.592 ] } }, { "index": 865, "index_chain": 865, "chain_name": "2", "nt_resnum": 1018, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1018", "linked_nts": [ "///2/1017", "///2/1019" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.403, "beta": 166.705, "gamma": 60.152, "delta": 82.146, "epsilon": -135.710, "zeta": -85.364, "epsilon_zeta": -50.346, "bb_type": "BI", "chi": -160.001, "glyco_bond": "anti", "C5prime_xyz": [ -1.344, 8.701, 0.539 ], "P_xyz": [ 1.255, 9.021, 0.380 ], "form": "A", "ssZp": 4.393, "Dp": 4.696, "splay_angle": 24.806, "splay_distance": 3.963, "splay_ratio": 0.215, "d22": 4.538, "d64": 4.104, "eta": 175.504, "theta": -145.738, "eta_prime": -169.901, "theta_prime": -144.897, "eta_base": -126.932, "theta_base": -132.261, "v0": 2.935, "v1": -24.459, "v2": 35.483, "v3": -34.773, "v4": 20.086, "amplitude": 36.588, "phase_angle": 14.117, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.886, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 165.949, 197.784, 139.307 ], "x_axis": [ -0.562, -0.531, 0.635 ], "y_axis": [ -0.593, -0.276, -0.756 ], "z_axis": [ 0.577, -0.801, -0.160 ], "quaternion": [ 0.024, 0.468, -0.601, 0.648 ] } }, { "index": 866, "index_chain": 866, "chain_name": "2", "nt_resnum": 1019, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1019", "linked_nts": [ "///2/1018", "///2/1020" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -74.284, "beta": -179.550, "gamma": 50.415, "delta": 85.743, "epsilon": -137.438, "zeta": -81.438, "epsilon_zeta": -56.001, "bb_type": "BI", "chi": -163.135, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.779, 0.720 ], "P_xyz": [ 1.168, 9.133, 1.573 ], "form": ".", "ssZp": 4.256, "Dp": 4.486, "splay_angle": 28.066, "splay_distance": 4.420, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 165.185, "theta": -137.550, "eta_prime": 171.239, "theta_prime": -124.004, "eta_base": -167.660, "theta_base": -67.187, "v0": -0.539, "v1": -19.413, "v2": 30.727, "v3": -31.933, "v4": 20.525, "amplitude": 32.608, "phase_angle": 19.551, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.747, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 168.691, 194.994, 139.944 ], "x_axis": [ -0.975, 0.087, 0.206 ], "y_axis": [ -0.206, 0.008, -0.978 ], "z_axis": [ -0.087, -0.996, 0.010 ], "quaternion": [ 0.104, 0.043, -0.702, 0.703 ] } }, { "index": 867, "index_chain": 867, "chain_name": "2", "nt_resnum": 1020, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1020", "linked_nts": [ "///2/1019", "///2/1021" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,bulge,phosphate", "alpha": -47.133, "beta": 150.887, "gamma": 67.894, "delta": 148.973, "epsilon": -121.535, "zeta": 175.368, "epsilon_zeta": 63.098, "bb_type": "BII", "chi": -128.616, "glyco_bond": "anti", "C5prime_xyz": [ -1.496, 8.549, -0.703 ], "P_xyz": [ 1.120, 8.317, -0.536 ], "form": ".", "ssZp": 1.458, "Dp": 1.476, "splay_angle": 56.917, "splay_distance": 9.176, "splay_ratio": 0.479, "d22": null, "d64": null, "eta": -176.839, "theta": 173.898, "eta_prime": -129.844, "theta_prime": 163.065, "eta_base": -69.980, "theta_base": -174.292, "v0": -16.401, "v1": 31.888, "v2": -34.350, "v3": 25.766, "v4": -6.080, "amplitude": 34.763, "phase_angle": 171.159, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.551, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 165.698, 191.933, 138.841 ], "x_axis": [ -0.750, 0.122, -0.651 ], "y_axis": [ 0.612, -0.248, -0.751 ], "z_axis": [ -0.253, -0.961, 0.111 ], "quaternion": [ -0.168, -0.311, -0.589, 0.726 ] } }, { "index": 868, "index_chain": 868, "chain_name": "2", "nt_resnum": 1021, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1021", "linked_nts": [ "///2/1020", "///2/1022" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,bulge", "alpha": -75.469, "beta": 160.207, "gamma": 66.276, "delta": 146.947, "epsilon": -64.607, "zeta": 88.374, "epsilon_zeta": 207.018, "bb_type": "--", "chi": -146.041, "glyco_bond": "anti", "C5prime_xyz": [ -1.820, 8.713, 0.185 ], "P_xyz": [ 0.625, 8.930, 1.113 ], "form": "Z", "ssZp": -0.001, "Dp": 0.135, "splay_angle": 40.120, "splay_distance": 6.544, "splay_ratio": 0.347, "d22": 5.163, "d64": 3.653, "eta": -122.964, "theta": 117.763, "eta_prime": -128.066, "theta_prime": 86.555, "eta_base": -126.764, "theta_base": 75.174, "v0": -20.928, "v1": 35.455, "v2": -35.680, "v3": 24.520, "v4": -2.473, "amplitude": 36.936, "phase_angle": 165.016, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4b", "suiteness": 0.334, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 171.220, 187.750, 144.859 ], "x_axis": [ -0.864, -0.261, -0.430 ], "y_axis": [ 0.406, 0.142, -0.903 ], "z_axis": [ 0.296, -0.955, -0.016 ], "quaternion": [ 0.255, 0.051, 0.711, -0.653 ] } }, { "index": 869, "index_chain": 869, "chain_name": "2", "nt_resnum": 1022, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1022", "linked_nts": [ "///2/1021", "///2/1023" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,phosphate,splayed-apart", "alpha": -171.616, "beta": -172.855, "gamma": 45.603, "delta": 81.258, "epsilon": 167.049, "zeta": 36.264, "epsilon_zeta": 130.785, "bb_type": "--", "chi": 158.074, "glyco_bond": "--", "C5prime_xyz": [ -2.025, 7.922, 2.628 ], "P_xyz": [ -0.434, 7.583, 4.686 ], "form": ".", "ssZp": 2.985, "Dp": 4.048, "splay_angle": 112.707, "splay_distance": 13.755, "splay_ratio": 0.832, "d22": null, "d64": null, "eta": 115.804, "theta": -53.541, "eta_prime": 108.810, "theta_prime": -57.164, "eta_base": 119.115, "theta_base": -52.365, "v0": -0.804, "v1": -20.793, "v2": 33.191, "v3": -34.567, "v4": 22.336, "amplitude": 35.292, "phase_angle": 19.868, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.314, "filter_rmsd": 0.110, "frame": { "rmsd": 0.013, "origin": [ 171.199, 193.236, 141.290 ], "x_axis": [ -0.379, -0.819, -0.430 ], "y_axis": [ 0.806, -0.065, -0.588 ], "z_axis": [ 0.454, -0.569, 0.685 ], "quaternion": [ 0.557, -0.008, 0.397, -0.730 ] } }, { "index": 870, "index_chain": 870, "chain_name": "2", "nt_resnum": 1023, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1023", "linked_nts": [ "///2/1022", "///2/1024" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart", "alpha": -163.924, "beta": -120.794, "gamma": 94.795, "delta": 81.667, "epsilon": -150.234, "zeta": -84.061, "epsilon_zeta": -66.173, "bb_type": "BI", "chi": -168.121, "glyco_bond": "anti", "C5prime_xyz": [ -1.417, 8.603, 1.009 ], "P_xyz": [ 1.142, 8.114, 1.296 ], "form": ".", "ssZp": 4.583, "Dp": 4.637, "splay_angle": 24.626, "splay_distance": 3.843, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 175.517, "theta": -144.941, "eta_prime": -141.403, "theta_prime": -146.836, "eta_base": -94.417, "theta_base": -150.251, "v0": 3.068, "v1": -24.953, "v2": 36.111, "v3": -35.328, "v4": 20.355, "amplitude": 37.213, "phase_angle": 13.977, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 183.349, 190.479, 147.118 ], "x_axis": [ 0.629, 0.140, -0.765 ], "y_axis": [ -0.703, 0.522, -0.483 ], "z_axis": [ 0.332, 0.841, 0.427 ], "quaternion": [ 0.803, -0.412, 0.342, 0.262 ] } }, { "index": 871, "index_chain": 871, "chain_name": "2", "nt_resnum": 1024, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1024", "linked_nts": [ "///2/1023", "///2/1025" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -75.364, "beta": -170.731, "gamma": 49.939, "delta": 84.978, "epsilon": -147.510, "zeta": -77.985, "epsilon_zeta": -69.525, "bb_type": "BI", "chi": -155.385, "glyco_bond": "anti", "C5prime_xyz": [ -1.200, 8.686, 0.306 ], "P_xyz": [ 1.314, 9.045, 0.966 ], "form": "A", "ssZp": 4.236, "Dp": 4.571, "splay_angle": 21.990, "splay_distance": 3.497, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 169.636, "theta": -145.931, "eta_prime": 171.480, "theta_prime": -141.506, "eta_base": 179.537, "theta_base": -113.836, "v0": 3.114, "v1": -23.098, "v2": 33.141, "v3": -32.301, "v4": 18.459, "amplitude": 34.088, "phase_angle": 13.532, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.754, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 185.121, 191.669, 150.314 ], "x_axis": [ 0.120, 0.022, -0.992 ], "y_axis": [ -0.839, 0.537, -0.090 ], "z_axis": [ 0.531, 0.843, 0.083 ], "quaternion": [ 0.660, -0.354, 0.577, 0.326 ] } }, { "index": 872, "index_chain": 872, "chain_name": "2", "nt_resnum": 1025, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1025", "linked_nts": [ "///2/1024", "///2/1026" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -56.775, "beta": 168.806, "gamma": 51.114, "delta": 83.800, "epsilon": -162.348, "zeta": -79.132, "epsilon_zeta": -83.216, "bb_type": "BI", "chi": -143.430, "glyco_bond": "anti", "C5prime_xyz": [ -1.381, 8.707, -0.440 ], "P_xyz": [ 1.215, 9.025, -0.645 ], "form": ".", "ssZp": 3.878, "Dp": 4.461, "splay_angle": 30.556, "splay_distance": 5.100, "splay_ratio": 0.265, "d22": 4.400, "d64": 4.980, "eta": 169.509, "theta": -120.502, "eta_prime": -174.032, "theta_prime": -126.019, "eta_base": -135.615, "theta_base": -98.323, "v0": 2.102, "v1": -22.640, "v2": 33.416, "v3": -33.169, "v4": 19.615, "amplitude": 34.636, "phase_angle": 15.252, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 187.544, 194.149, 149.853 ], "x_axis": [ -0.362, 0.268, -0.893 ], "y_axis": [ -0.673, 0.588, 0.449 ], "z_axis": [ 0.645, 0.764, -0.032 ], "quaternion": [ 0.546, -0.144, 0.704, 0.431 ] } }, { "index": 873, "index_chain": 873, "chain_name": "2", "nt_resnum": 1026, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1026", "linked_nts": [ "///2/1025", "///2/1027" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 153.314, "beta": -140.832, "gamma": 176.113, "delta": 81.638, "epsilon": -155.729, "zeta": -95.731, "epsilon_zeta": -59.998, "bb_type": "BI", "chi": -165.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.701, 0.877 ], "P_xyz": [ 0.284, 9.863, -0.858 ], "form": ".", "ssZp": 4.499, "Dp": 4.569, "splay_angle": 63.174, "splay_distance": 10.363, "splay_ratio": 0.530, "d22": null, "d64": null, "eta": 169.473, "theta": 174.880, "eta_prime": -164.526, "theta_prime": 166.900, "eta_base": -114.125, "theta_base": 167.864, "v0": 2.382, "v1": -24.075, "v2": 35.435, "v3": -35.056, "v4": 20.610, "amplitude": 36.684, "phase_angle": 14.994, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.686, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 188.962, 198.085, 146.938 ], "x_axis": [ -0.704, 0.564, -0.433 ], "y_axis": [ -0.265, 0.357, 0.896 ], "z_axis": [ 0.659, 0.745, -0.102 ], "quaternion": [ 0.371, 0.102, 0.735, 0.558 ] } }, { "index": 874, "index_chain": 874, "chain_name": "2", "nt_resnum": 1027, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1027", "linked_nts": [ "///2/1026", "///2/1028" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -176.978, "beta": 149.448, "gamma": 178.341, "delta": 82.108, "epsilon": -107.311, "zeta": -45.242, "epsilon_zeta": -62.069, "bb_type": "--", "chi": 170.787, "glyco_bond": "anti", "C5prime_xyz": [ -1.416, 8.037, 2.159 ], "P_xyz": [ -0.584, 10.516, 2.054 ], "form": ".", "ssZp": 4.825, "Dp": 4.817, "splay_angle": 57.190, "splay_distance": 8.532, "splay_ratio": 0.480, "d22": null, "d64": null, "eta": -178.746, "theta": -127.901, "eta_prime": 164.740, "theta_prime": -114.402, "eta_base": 153.644, "theta_base": -66.511, "v0": 6.431, "v1": -27.702, "v2": 37.308, "v3": -34.613, "v4": 17.783, "amplitude": 37.777, "phase_angle": 9.037, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.399, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 199.319, 198.383, 146.734 ], "x_axis": [ -0.674, 0.025, -0.738 ], "y_axis": [ -0.726, 0.161, 0.668 ], "z_axis": [ 0.136, 0.987, -0.091 ], "quaternion": [ 0.315, -0.253, 0.694, 0.596 ] } }, { "index": 875, "index_chain": 875, "chain_name": "2", "nt_resnum": 1028, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1028", "linked_nts": [ "///2/1027", "///2/1029" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -73.665, "beta": -171.115, "gamma": 53.834, "delta": 80.510, "epsilon": -127.348, "zeta": -64.163, "epsilon_zeta": -63.186, "bb_type": "BI", "chi": -168.915, "glyco_bond": "anti", "C5prime_xyz": [ -1.434, 8.621, 1.041 ], "P_xyz": [ 1.037, 9.035, 1.823 ], "form": ".", "ssZp": 4.581, "Dp": 4.738, "splay_angle": 39.155, "splay_distance": 6.015, "splay_ratio": 0.335, "d22": null, "d64": null, "eta": 158.100, "theta": -120.952, "eta_prime": -167.970, "theta_prime": -111.572, "eta_base": -99.804, "theta_base": -62.817, "v0": 2.438, "v1": -24.694, "v2": 36.342, "v3": -35.930, "v4": 21.114, "amplitude": 37.620, "phase_angle": 14.972, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.144, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 193.232, 204.043, 144.809 ], "x_axis": [ -0.802, -0.131, 0.583 ], "y_axis": [ 0.598, -0.181, 0.781 ], "z_axis": [ 0.003, 0.975, 0.224 ], "quaternion": [ -0.245, 0.197, 0.591, 0.743 ] } }, { "index": 876, "index_chain": 876, "chain_name": "2", "nt_resnum": 1029, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1029", "linked_nts": [ "///2/1028", "///2/1030" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.053, "beta": 156.317, "gamma": 65.485, "delta": 81.392, "epsilon": -144.650, "zeta": -72.751, "epsilon_zeta": -71.899, "bb_type": "BI", "chi": -167.049, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.664, 0.941 ], "P_xyz": [ 1.248, 8.941, 0.549 ], "form": "A", "ssZp": 4.585, "Dp": 4.678, "splay_angle": 25.044, "splay_distance": 3.941, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 165.259, "theta": -139.620, "eta_prime": -162.427, "theta_prime": -142.576, "eta_base": -89.534, "theta_base": -118.742, "v0": 3.549, "v1": -25.432, "v2": 36.437, "v3": -35.385, "v4": 20.081, "amplitude": 37.439, "phase_angle": 13.288, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.559, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 190.776, 206.632, 149.651 ], "x_axis": [ 0.155, -0.195, 0.968 ], "y_axis": [ 0.987, 0.075, -0.143 ], "z_axis": [ -0.045, 0.978, 0.204 ], "quaternion": [ 0.599, -0.468, -0.423, -0.493 ] } }, { "index": 877, "index_chain": 877, "chain_name": "2", "nt_resnum": 1030, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1030", "linked_nts": [ "///2/1029", "///2/1031" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -66.496, "beta": 178.902, "gamma": 49.270, "delta": 81.350, "epsilon": -159.122, "zeta": -87.244, "epsilon_zeta": -71.878, "bb_type": "BI", "chi": -170.633, "glyco_bond": "anti", "C5prime_xyz": [ -1.464, 8.603, 1.149 ], "P_xyz": [ 1.000, 9.005, 1.948 ], "form": ".", "ssZp": 4.522, "Dp": 4.543, "splay_angle": 29.895, "splay_distance": 4.586, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 163.982, "theta": -167.758, "eta_prime": 177.453, "theta_prime": -165.486, "eta_base": -139.687, "theta_base": -158.267, "v0": 1.793, "v1": -23.601, "v2": 35.209, "v3": -35.169, "v4": 21.061, "amplitude": 36.607, "phase_angle": 15.884, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.957, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 189.487, 209.712, 151.745 ], "x_axis": [ 0.677, -0.452, 0.581 ], "y_axis": [ 0.696, 0.136, -0.705 ], "z_axis": [ 0.239, 0.882, 0.407 ], "quaternion": [ 0.745, -0.532, -0.115, -0.385 ] } }, { "index": 878, "index_chain": 878, "chain_name": "2", "nt_resnum": 1031, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1031", "linked_nts": [ "///2/1030", "///2/1032" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor", "alpha": -63.917, "beta": 174.046, "gamma": 56.290, "delta": 81.887, "epsilon": -146.151, "zeta": -71.726, "epsilon_zeta": -74.425, "bb_type": "BI", "chi": -169.972, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.566, 1.119 ], "P_xyz": [ 1.194, 8.874, 1.535 ], "form": "A", "ssZp": 4.605, "Dp": 4.654, "splay_angle": 24.728, "splay_distance": 3.871, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 175.534, "theta": -141.026, "eta_prime": 178.588, "theta_prime": -139.439, "eta_base": -170.177, "theta_base": -108.128, "v0": 3.343, "v1": -24.852, "v2": 35.699, "v3": -34.763, "v4": 19.829, "amplitude": 36.715, "phase_angle": 13.510, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.770, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 186.946, 213.143, 153.417 ], "x_axis": [ 0.834, -0.424, 0.354 ], "y_axis": [ 0.483, 0.247, -0.840 ], "z_axis": [ 0.268, 0.871, 0.411 ], "quaternion": [ 0.789, -0.542, -0.027, -0.287 ] } }, { "index": 879, "index_chain": 879, "chain_name": "2", "nt_resnum": 1032, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1032", "linked_nts": [ "///2/1031", "///2/1033" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate", "alpha": -64.336, "beta": 169.534, "gamma": 58.822, "delta": 81.176, "epsilon": -140.098, "zeta": -64.977, "epsilon_zeta": -75.121, "bb_type": "BI", "chi": -166.518, "glyco_bond": "anti", "C5prime_xyz": [ -1.347, 8.716, 0.906 ], "P_xyz": [ 1.243, 9.079, 1.073 ], "form": ".", "ssZp": 4.546, "Dp": 4.671, "splay_angle": 32.260, "splay_distance": 4.968, "splay_ratio": 0.278, "d22": null, "d64": null, "eta": 171.042, "theta": -130.118, "eta_prime": -173.420, "theta_prime": -126.540, "eta_base": -126.135, "theta_base": -81.980, "v0": 1.935, "v1": -24.003, "v2": 35.672, "v3": -35.552, "v4": 21.209, "amplitude": 37.051, "phase_angle": 15.683, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 188.387, 215.177, 156.379 ], "x_axis": [ 0.950, -0.196, -0.245 ], "y_axis": [ -0.127, 0.472, -0.872 ], "z_axis": [ 0.286, 0.859, 0.424 ], "quaternion": [ 0.843, -0.513, 0.157, -0.020 ] } }, { "index": 880, "index_chain": 880, "chain_name": "2", "nt_resnum": 1033, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1033", "linked_nts": [ "///2/1032", "///2/1034" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,splayed-apart", "alpha": -66.292, "beta": 164.998, "gamma": 62.554, "delta": 82.945, "epsilon": -132.985, "zeta": -171.289, "epsilon_zeta": 38.304, "bb_type": "--", "chi": -167.093, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.607, 0.950 ], "P_xyz": [ 1.332, 8.824, 0.809 ], "form": ".", "ssZp": 4.582, "Dp": 4.739, "splay_angle": 91.723, "splay_distance": 12.939, "splay_ratio": 0.718, "d22": null, "d64": null, "eta": 168.989, "theta": 129.016, "eta_prime": -167.397, "theta_prime": 142.746, "eta_base": -102.010, "theta_base": 168.072, "v0": 4.937, "v1": -26.060, "v2": 36.135, "v3": -34.290, "v4": 18.519, "amplitude": 36.824, "phase_angle": 11.096, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.813, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 192.414, 218.074, 156.653 ], "x_axis": [ 0.477, 0.241, -0.845 ], "y_axis": [ -0.829, 0.444, -0.341 ], "z_axis": [ 0.293, 0.863, 0.412 ], "quaternion": [ 0.764, -0.394, 0.373, 0.350 ] } }, { "index": 881, "index_chain": 881, "chain_name": "2", "nt_resnum": 1034, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1034", "linked_nts": [ "///2/1033", "///2/1035" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,A-minor,splayed-apart", "alpha": -54.595, "beta": 157.110, "gamma": 54.010, "delta": 81.349, "epsilon": -110.551, "zeta": -86.709, "epsilon_zeta": -23.842, "bb_type": "--", "chi": 169.164, "glyco_bond": "anti", "C5prime_xyz": [ -2.151, 8.262, 2.116 ], "P_xyz": [ 0.216, 8.577, 3.191 ], "form": ".", "ssZp": 4.448, "Dp": 4.529, "splay_angle": 22.380, "splay_distance": 3.416, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": -149.911, "theta": -125.419, "eta_prime": -169.217, "theta_prime": -122.168, "eta_base": 161.057, "theta_base": -58.928, "v0": -3.430, "v1": -18.869, "v2": 32.575, "v3": -35.496, "v4": 24.558, "amplitude": 35.655, "phase_angle": 23.990, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.616, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 188.023, 223.653, 167.470 ], "x_axis": [ 0.708, -0.677, -0.202 ], "y_axis": [ -0.403, -0.152, -0.902 ], "z_axis": [ 0.580, 0.720, -0.381 ], "quaternion": [ 0.542, -0.748, 0.361, -0.126 ] } }, { "index": 882, "index_chain": 882, "chain_name": "2", "nt_resnum": 1035, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1035", "linked_nts": [ "///2/1034", "///2/1036" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop,A-minor", "alpha": -66.328, "beta": 159.817, "gamma": 50.488, "delta": 86.482, "epsilon": -154.640, "zeta": -68.288, "epsilon_zeta": -86.352, "bb_type": "BI", "chi": -146.160, "glyco_bond": "anti", "C5prime_xyz": [ -0.995, 8.589, -0.226 ], "P_xyz": [ 1.614, 8.425, -0.499 ], "form": ".", "ssZp": 3.997, "Dp": 4.570, "splay_angle": 21.630, "splay_distance": 3.411, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 148.506, "theta": -137.123, "eta_prime": 172.381, "theta_prime": -139.361, "eta_base": -105.855, "theta_base": -102.921, "v0": 6.697, "v1": -25.841, "v2": 34.136, "v3": -31.193, "v4": 15.514, "amplitude": 34.445, "phase_angle": 7.681, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.270, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 190.604, 224.210, 165.302 ], "x_axis": [ 0.027, -0.437, -0.899 ], "y_axis": [ -0.641, 0.683, -0.351 ], "z_axis": [ 0.767, 0.586, -0.261 ], "quaternion": [ 0.602, -0.389, 0.692, 0.085 ] } }, { "index": 883, "index_chain": 883, "chain_name": "2", "nt_resnum": 1036, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1036", "linked_nts": [ "///2/1035", "///2/1037" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -67.554, "beta": 166.078, "gamma": 58.839, "delta": 83.209, "epsilon": -127.641, "zeta": -62.221, "epsilon_zeta": -65.420, "bb_type": "BI", "chi": -146.616, "glyco_bond": "anti", "C5prime_xyz": [ -1.051, 8.616, -0.271 ], "P_xyz": [ 1.502, 8.568, -0.875 ], "form": ".", "ssZp": 3.800, "Dp": 4.774, "splay_angle": 46.928, "splay_distance": 7.442, "splay_ratio": 0.398, "d22": null, "d64": null, "eta": 170.389, "theta": -115.096, "eta_prime": -173.007, "theta_prime": -114.433, "eta_base": -120.128, "theta_base": -88.591, "v0": 6.706, "v1": -27.508, "v2": 36.823, "v3": -33.899, "v4": 17.193, "amplitude": 37.229, "phase_angle": 8.470, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.871, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 192.768, 225.459, 162.980 ], "x_axis": [ -0.354, 0.080, -0.932 ], "y_axis": [ -0.348, 0.913, 0.211 ], "z_axis": [ 0.868, 0.399, -0.295 ], "quaternion": [ 0.562, -0.084, 0.800, 0.190 ] } }, { "index": 884, "index_chain": 884, "chain_name": "2", "nt_resnum": 1037, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1037", "linked_nts": [ "///2/1036", "///2/1038" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,A-minor", "alpha": -57.193, "beta": -175.084, "gamma": 41.639, "delta": 77.942, "epsilon": -129.210, "zeta": -94.222, "epsilon_zeta": -34.988, "bb_type": "--", "chi": 174.480, "glyco_bond": "anti", "C5prime_xyz": [ -1.805, 8.378, 1.928 ], "P_xyz": [ 0.317, 8.712, 3.427 ], "form": "A", "ssZp": 4.742, "Dp": 4.736, "splay_angle": 26.146, "splay_distance": 4.163, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 167.891, "theta": -156.282, "eta_prime": -173.088, "theta_prime": -147.451, "eta_base": -128.407, "theta_base": -129.316, "v0": 0.846, "v1": -24.126, "v2": 36.978, "v3": -37.509, "v4": 23.097, "amplitude": 38.748, "phase_angle": 17.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.580, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 194.413, 229.727, 157.110 ], "x_axis": [ -0.997, 0.034, -0.063 ], "y_axis": [ -0.057, 0.155, 0.986 ], "z_axis": [ 0.044, 0.987, -0.152 ], "quaternion": [ 0.035, -0.008, 0.759, 0.650 ] } }, { "index": 885, "index_chain": 885, "chain_name": "2", "nt_resnum": 1038, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1038", "linked_nts": [ "///2/1037", "///2/1039" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet", "alpha": -59.301, "beta": 164.602, "gamma": 57.300, "delta": 79.848, "epsilon": -156.154, "zeta": -73.607, "epsilon_zeta": -82.547, "bb_type": "BI", "chi": -166.325, "glyco_bond": "anti", "C5prime_xyz": [ -1.712, 8.738, 0.866 ], "P_xyz": [ 0.825, 9.353, 1.042 ], "form": "A", "ssZp": 4.471, "Dp": 4.532, "splay_angle": 19.471, "splay_distance": 3.131, "splay_ratio": 0.172, "d22": 4.541, "d64": 4.446, "eta": 170.293, "theta": -151.315, "eta_prime": 179.833, "theta_prime": -153.053, "eta_base": -157.480, "theta_base": -130.407, "v0": -0.725, "v1": -22.096, "v2": 35.175, "v3": -36.576, "v4": 23.512, "amplitude": 37.357, "phase_angle": 19.679, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.532, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 195.086, 232.371, 153.966 ], "x_axis": [ -0.921, 0.036, 0.388 ], "y_axis": [ 0.387, 0.191, 0.902 ], "z_axis": [ -0.042, 0.981, -0.190 ], "quaternion": [ -0.142, 0.139, 0.759, 0.621 ] } }, { "index": 886, "index_chain": 886, "chain_name": "2", "nt_resnum": 1039, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1039", "linked_nts": [ "///2/1038", "///2/1040" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -66.185, "beta": 174.522, "gamma": 53.081, "delta": 79.854, "epsilon": -139.328, "zeta": -77.987, "epsilon_zeta": -61.341, "bb_type": "BI", "chi": -157.060, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.813, 0.336 ], "P_xyz": [ 1.212, 9.302, 0.422 ], "form": "A", "ssZp": 4.313, "Dp": 4.684, "splay_angle": 26.572, "splay_distance": 4.379, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 169.184, "theta": -144.689, "eta_prime": 178.444, "theta_prime": -143.336, "eta_base": -146.443, "theta_base": -130.139, "v0": 1.530, "v1": -24.071, "v2": 36.207, "v3": -36.312, "v4": 21.940, "amplitude": 37.729, "phase_angle": 16.331, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.948, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 194.007, 234.639, 152.097 ], "x_axis": [ -0.581, 0.157, 0.799 ], "y_axis": [ 0.800, 0.289, 0.525 ], "z_axis": [ -0.149, 0.944, -0.293 ], "quaternion": [ -0.322, 0.325, 0.735, 0.500 ] } }, { "index": 887, "index_chain": 887, "chain_name": "2", "nt_resnum": 1040, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1040", "linked_nts": [ "///2/1039", "///2/1041" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -69.200, "beta": -175.786, "gamma": 42.645, "delta": 80.227, "epsilon": -172.268, "zeta": -84.557, "epsilon_zeta": -87.711, "bb_type": "BI", "chi": -161.619, "glyco_bond": "anti", "C5prime_xyz": [ -1.615, 8.830, 0.602 ], "P_xyz": [ 0.738, 9.612, 1.449 ], "form": "A", "ssZp": 4.329, "Dp": 4.387, "splay_angle": 21.275, "splay_distance": 3.524, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 157.905, "theta": -145.446, "eta_prime": 168.043, "theta_prime": -149.459, "eta_base": -166.549, "theta_base": -126.982, "v0": -0.856, "v1": -21.602, "v2": 34.517, "v3": -35.993, "v4": 23.242, "amplitude": 36.713, "phase_angle": 19.916, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.743, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 191.744, 238.094, 150.644 ], "x_axis": [ -0.039, -0.399, 0.916 ], "y_axis": [ 0.983, 0.149, 0.107 ], "z_axis": [ -0.179, 0.905, 0.386 ], "quaternion": [ 0.611, -0.326, -0.448, -0.565 ] } }, { "index": 888, "index_chain": 888, "chain_name": "2", "nt_resnum": 1041, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1041", "linked_nts": [ "///2/1040", "///2/1042" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 169.368, "beta": -149.995, "gamma": 156.935, "delta": 82.584, "epsilon": -119.523, "zeta": -89.460, "epsilon_zeta": -30.063, "bb_type": "--", "chi": 177.926, "glyco_bond": "anti", "C5prime_xyz": [ -1.598, 8.438, 1.785 ], "P_xyz": [ 0.617, 9.619, 1.034 ], "form": "A", "ssZp": 4.601, "Dp": 4.648, "splay_angle": 22.342, "splay_distance": 3.482, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 166.161, "theta": -150.529, "eta_prime": 177.527, "theta_prime": -149.176, "eta_base": -147.109, "theta_base": -116.918, "v0": 0.947, "v1": -22.181, "v2": 33.754, "v3": -34.159, "v4": 20.952, "amplitude": 35.318, "phase_angle": 17.112, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.222, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 189.315, 240.290, 151.947 ], "x_axis": [ 0.460, -0.381, 0.802 ], "y_axis": [ 0.872, 0.364, -0.327 ], "z_axis": [ -0.167, 0.850, 0.500 ], "quaternion": [ 0.762, -0.386, -0.318, -0.411 ] } }, { "index": 889, "index_chain": 889, "chain_name": "2", "nt_resnum": 1042, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1042", "linked_nts": [ "///2/1041", "///2/1043" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -64.642, "beta": 164.968, "gamma": 51.444, "delta": 83.021, "epsilon": -147.505, "zeta": -75.029, "epsilon_zeta": -72.476, "bb_type": "BI", "chi": -156.658, "glyco_bond": "anti", "C5prime_xyz": [ -1.266, 8.692, 0.353 ], "P_xyz": [ 1.346, 8.927, 0.358 ], "form": "A", "ssZp": 4.318, "Dp": 4.623, "splay_angle": 26.586, "splay_distance": 4.192, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 158.976, "theta": -142.048, "eta_prime": 174.193, "theta_prime": -140.180, "eta_base": -140.081, "theta_base": -111.406, "v0": 3.393, "v1": -24.425, "v2": 34.985, "v3": -34.006, "v4": 19.348, "amplitude": 35.956, "phase_angle": 13.342, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.463, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 188.330, 242.349, 154.576 ], "x_axis": [ 0.934, -0.139, 0.330 ], "y_axis": [ 0.340, 0.631, -0.697 ], "z_axis": [ -0.111, 0.763, 0.636 ], "quaternion": [ 0.895, -0.408, -0.123, -0.134 ] } }, { "index": 890, "index_chain": 890, "chain_name": "2", "nt_resnum": 1043, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1043", "linked_nts": [ "///2/1042", "///2/1044" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -58.479, "beta": 166.728, "gamma": 59.838, "delta": 82.636, "epsilon": -168.794, "zeta": -80.689, "epsilon_zeta": -88.104, "bb_type": "BI", "chi": -150.573, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.788, -0.021 ], "P_xyz": [ 1.250, 9.073, -0.379 ], "form": ".", "ssZp": 4.149, "Dp": 4.447, "splay_angle": 32.742, "splay_distance": 5.146, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 172.220, "theta": -122.889, "eta_prime": -167.844, "theta_prime": -126.099, "eta_base": -123.456, "theta_base": -87.037, "v0": 2.450, "v1": -23.740, "v2": 34.804, "v3": -34.350, "v4": 20.147, "amplitude": 35.998, "phase_angle": 14.803, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.891, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 189.113, 244.684, 157.968 ], "x_axis": [ 0.956, 0.263, -0.129 ], "y_axis": [ -0.276, 0.661, -0.698 ], "z_axis": [ -0.098, 0.703, 0.704 ], "quaternion": [ 0.911, -0.384, 0.008, 0.148 ] } }, { "index": 891, "index_chain": 891, "chain_name": "2", "nt_resnum": 1044, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1044", "linked_nts": [ "///2/1043", "///2/1045" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,internal-loop,splayed-apart", "alpha": 163.518, "beta": -128.082, "gamma": 156.504, "delta": 82.412, "epsilon": -118.842, "zeta": 160.838, "epsilon_zeta": 80.320, "bb_type": "BII", "chi": -167.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.640, 0.997 ], "P_xyz": [ 0.706, 9.110, -0.604 ], "form": ".", "ssZp": 4.510, "Dp": 4.743, "splay_angle": 94.050, "splay_distance": 13.392, "splay_ratio": 0.732, "d22": null, "d64": null, "eta": 169.028, "theta": 100.454, "eta_prime": -164.355, "theta_prime": 92.931, "eta_base": -103.249, "theta_base": 94.655, "v0": 3.536, "v1": -24.816, "v2": 35.485, "v3": -34.437, "v4": 19.520, "amplitude": 36.447, "phase_angle": 13.194, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.133, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 191.735, 248.828, 159.526 ], "x_axis": [ 0.429, 0.717, -0.549 ], "y_axis": [ -0.903, 0.315, -0.294 ], "z_axis": [ -0.038, 0.621, 0.783 ], "quaternion": [ 0.795, -0.288, 0.161, 0.510 ] } }, { "index": 892, "index_chain": 892, "chain_name": "2", "nt_resnum": 1045, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1045", "linked_nts": [ "///2/1044", "///2/1046" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": -72.170, "beta": 149.701, "gamma": 1.556, "delta": 81.237, "epsilon": -144.402, "zeta": -69.434, "epsilon_zeta": -74.968, "bb_type": "BI", "chi": -171.511, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.549, 1.213 ], "P_xyz": [ 0.813, 8.762, 2.669 ], "form": "A", "ssZp": 4.644, "Dp": 4.681, "splay_angle": 25.352, "splay_distance": 3.929, "splay_ratio": 0.221, "d22": 3.952, "d64": 4.152, "eta": 144.083, "theta": -141.519, "eta_prime": 138.001, "theta_prime": -133.888, "eta_base": 133.594, "theta_base": -92.430, "v0": 3.803, "v1": -25.692, "v2": 36.623, "v3": -35.434, "v4": 19.958, "amplitude": 37.577, "phase_angle": 12.940, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 180.040, 243.601, 163.431 ], "x_axis": [ 0.797, -0.314, -0.516 ], "y_axis": [ 0.165, 0.935, -0.313 ], "z_axis": [ 0.580, 0.164, 0.798 ], "quaternion": [ 0.939, -0.127, 0.292, -0.127 ] } }, { "index": 893, "index_chain": 893, "chain_name": "2", "nt_resnum": 1046, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1046", "linked_nts": [ "///2/1045", "///2/1047" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -63.840, "beta": 166.244, "gamma": 61.854, "delta": 82.442, "epsilon": -170.545, "zeta": -75.724, "epsilon_zeta": -94.821, "bb_type": "BI", "chi": -170.503, "glyco_bond": "anti", "C5prime_xyz": [ -1.473, 8.617, 1.143 ], "P_xyz": [ 1.118, 8.965, 1.377 ], "form": "A", "ssZp": 4.370, "Dp": 4.409, "splay_angle": 25.726, "splay_distance": 3.892, "splay_ratio": 0.223, "d22": 4.332, "d64": 3.939, "eta": 166.860, "theta": -129.459, "eta_prime": -169.843, "theta_prime": -133.732, "eta_base": -111.460, "theta_base": -90.522, "v0": 1.496, "v1": -22.956, "v2": 34.451, "v3": -34.525, "v4": 20.841, "amplitude": 35.886, "phase_angle": 16.255, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.857, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 183.318, 242.643, 165.374 ], "x_axis": [ 0.694, 0.377, -0.613 ], "y_axis": [ -0.402, 0.910, 0.105 ], "z_axis": [ 0.598, 0.173, 0.783 ], "quaternion": [ 0.920, -0.019, 0.329, 0.212 ] } }, { "index": 894, "index_chain": 894, "chain_name": "2", "nt_resnum": 1047, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1047", "linked_nts": [ "///2/1046", "///2/1048" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -166.240, "beta": -137.212, "gamma": 122.219, "delta": 81.469, "epsilon": -130.927, "zeta": -76.030, "epsilon_zeta": -54.897, "bb_type": "BI", "chi": -169.974, "glyco_bond": "anti", "C5prime_xyz": [ -1.337, 8.668, 1.122 ], "P_xyz": [ 1.227, 8.737, 0.581 ], "form": ".", "ssZp": 4.564, "Dp": 4.680, "splay_angle": 31.694, "splay_distance": 4.874, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 158.909, "theta": -126.972, "eta_prime": 178.791, "theta_prime": -127.822, "eta_base": -118.293, "theta_base": -85.801, "v0": 1.585, "v1": -23.337, "v2": 34.998, "v3": -35.066, "v4": 21.108, "amplitude": 36.441, "phase_angle": 16.179, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 186.775, 243.680, 166.832 ], "x_axis": [ 0.129, 0.931, -0.341 ], "y_axis": [ -0.757, 0.315, 0.572 ], "z_axis": [ 0.640, 0.185, 0.746 ], "quaternion": [ 0.740, 0.131, 0.332, 0.571 ] } }, { "index": 895, "index_chain": 895, "chain_name": "2", "nt_resnum": 1048, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1048", "linked_nts": [ "///2/1047", "///2/1049" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -51.555, "beta": 159.035, "gamma": 52.188, "delta": 82.374, "epsilon": 178.704, "zeta": -90.866, "epsilon_zeta": -90.430, "bb_type": "BI", "chi": -163.218, "glyco_bond": "anti", "C5prime_xyz": [ -1.137, 8.648, 0.739 ], "P_xyz": [ 1.482, 8.687, 0.678 ], "form": ".", "ssZp": 4.367, "Dp": 4.394, "splay_angle": 68.392, "splay_distance": 11.018, "splay_ratio": 0.569, "d22": null, "d64": null, "eta": 161.354, "theta": -177.068, "eta_prime": -169.350, "theta_prime": 170.393, "eta_base": -98.761, "theta_base": 163.855, "v0": 5.270, "v1": -26.374, "v2": 36.339, "v3": -34.303, "v4": 18.339, "amplitude": 36.974, "phase_angle": 10.633, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.693, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 189.066, 247.350, 169.076 ], "x_axis": [ -0.541, 0.807, 0.236 ], "y_axis": [ -0.551, -0.553, 0.625 ], "z_axis": [ 0.635, 0.208, 0.744 ], "quaternion": [ 0.403, 0.259, 0.247, 0.842 ] } }, { "index": 896, "index_chain": 896, "chain_name": "2", "nt_resnum": 1049, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1049", "linked_nts": [ "///2/1048", "///2/1050" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -168.870, "beta": 153.659, "gamma": 176.319, "delta": 82.130, "epsilon": -107.988, "zeta": -47.081, "epsilon_zeta": -60.907, "bb_type": "--", "chi": 169.328, "glyco_bond": "anti", "C5prime_xyz": [ -1.582, 8.053, 2.226 ], "P_xyz": [ -0.634, 10.493, 2.124 ], "form": ".", "ssZp": 4.751, "Dp": 4.764, "splay_angle": 52.532, "splay_distance": 7.932, "splay_ratio": 0.444, "d22": null, "d64": null, "eta": -170.116, "theta": -129.578, "eta_prime": 169.365, "theta_prime": -115.628, "eta_base": 151.877, "theta_base": -63.323, "v0": 4.496, "v1": -25.815, "v2": 36.174, "v3": -34.567, "v4": 18.975, "amplitude": 36.953, "phase_angle": 11.786, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.328, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 198.240, 241.254, 168.824 ], "x_axis": [ -0.205, 0.885, -0.418 ], "y_axis": [ -0.882, 0.017, 0.470 ], "z_axis": [ 0.424, 0.465, 0.777 ], "quaternion": [ 0.630, 0.002, 0.334, 0.701 ] } }, { "index": 897, "index_chain": 897, "chain_name": "2", "nt_resnum": 1050, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1050", "linked_nts": [ "///2/1049", "///2/1051" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -71.171, "beta": 173.896, "gamma": 57.851, "delta": 79.802, "epsilon": -132.585, "zeta": -62.189, "epsilon_zeta": -70.395, "bb_type": "BI", "chi": -175.815, "glyco_bond": "anti", "C5prime_xyz": [ -1.650, 8.533, 1.415 ], "P_xyz": [ 0.855, 9.020, 2.003 ], "form": ".", "ssZp": 4.674, "Dp": 4.703, "splay_angle": 34.206, "splay_distance": 5.317, "splay_ratio": 0.296, "d22": null, "d64": null, "eta": 153.048, "theta": -123.168, "eta_prime": -169.857, "theta_prime": -118.204, "eta_base": -93.274, "theta_base": -69.908, "v0": 1.023, "v1": -23.623, "v2": 35.966, "v3": -36.386, "v4": 22.308, "amplitude": 37.629, "phase_angle": 17.098, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.177, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 195.782, 248.107, 171.972 ], "x_axis": [ -0.971, 0.058, 0.231 ], "y_axis": [ 0.022, -0.945, 0.326 ], "z_axis": [ 0.237, 0.322, 0.917 ], "quaternion": [ 0.009, 0.120, 0.166, 0.979 ] } }, { "index": 898, "index_chain": 898, "chain_name": "2", "nt_resnum": 1051, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1051", "linked_nts": [ "///2/1050", "///2/1052" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -62.339, "beta": 167.438, "gamma": 57.245, "delta": 80.304, "epsilon": -150.228, "zeta": -73.344, "epsilon_zeta": -76.884, "bb_type": "BI", "chi": -166.389, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.729, 0.892 ], "P_xyz": [ 1.131, 9.160, 1.024 ], "form": "A", "ssZp": 4.546, "Dp": 4.623, "splay_angle": 24.316, "splay_distance": 3.843, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 163.032, "theta": -146.844, "eta_prime": -169.605, "theta_prime": -147.944, "eta_base": -97.102, "theta_base": -126.144, "v0": 1.694, "v1": -24.077, "v2": 36.085, "v3": -36.108, "v4": 21.711, "amplitude": 37.558, "phase_angle": 16.096, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.814, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 192.895, 248.759, 176.389 ], "x_axis": [ -0.491, -0.779, 0.389 ], "y_axis": [ 0.842, -0.540, -0.018 ], "z_axis": [ 0.224, 0.319, 0.921 ], "quaternion": [ -0.472, 0.178, 0.088, 0.859 ] } }, { "index": 899, "index_chain": 899, "chain_name": "2", "nt_resnum": 1052, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1052", "linked_nts": [ "///2/1051", "///2/1053" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -62.994, "beta": -178.810, "gamma": 42.307, "delta": 78.576, "epsilon": -140.970, "zeta": -76.740, "epsilon_zeta": -64.230, "bb_type": "BI", "chi": -168.013, "glyco_bond": "anti", "C5prime_xyz": [ -1.350, 8.613, 0.975 ], "P_xyz": [ 1.121, 9.077, 1.711 ], "form": "A", "ssZp": 4.632, "Dp": 4.736, "splay_angle": 26.847, "splay_distance": 4.264, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 165.164, "theta": -147.011, "eta_prime": 173.338, "theta_prime": -141.473, "eta_base": -151.095, "theta_base": -114.026, "v0": 3.803, "v1": -26.727, "v2": 38.298, "v3": -37.127, "v4": 21.007, "amplitude": 39.335, "phase_angle": 13.181, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.758, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 192.003, 250.291, 179.798 ], "x_axis": [ -0.024, -0.997, 0.075 ], "y_axis": [ 0.967, -0.042, -0.251 ], "z_axis": [ 0.253, 0.066, 0.965 ], "quaternion": [ 0.689, -0.115, 0.065, -0.713 ] } }, { "index": 900, "index_chain": 900, "chain_name": "2", "nt_resnum": 1053, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1053", "linked_nts": [ "///2/1052", "///2/1054" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet", "alpha": -57.612, "beta": 163.303, "gamma": 62.166, "delta": 77.635, "epsilon": -149.557, "zeta": -73.997, "epsilon_zeta": -75.560, "bb_type": "BI", "chi": -170.068, "glyco_bond": "anti", "C5prime_xyz": [ -1.580, 8.730, 1.084 ], "P_xyz": [ 0.967, 9.325, 1.057 ], "form": "A", "ssZp": 4.629, "Dp": 4.650, "splay_angle": 18.702, "splay_distance": 3.071, "splay_ratio": 0.169, "d22": null, "d64": null, "eta": 172.132, "theta": -148.945, "eta_prime": -171.924, "theta_prime": -149.112, "eta_base": -131.190, "theta_base": -134.945, "v0": 0.460, "v1": -24.181, "v2": 37.368, "v3": -38.110, "v4": 23.699, "amplitude": 39.271, "phase_angle": 17.910, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.793, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 191.237, 249.166, 183.840 ], "x_axis": [ 0.475, -0.871, -0.126 ], "y_axis": [ 0.833, 0.492, -0.252 ], "z_axis": [ 0.282, 0.014, 0.959 ], "quaternion": [ 0.855, -0.078, 0.119, -0.498 ] } }, { "index": 901, "index_chain": 901, "chain_name": "2", "nt_resnum": 1054, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1054", "linked_nts": [ "///2/1053", "///2/1055" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop", "alpha": -76.207, "beta": -173.219, "gamma": 53.324, "delta": 82.690, "epsilon": 176.304, "zeta": -82.950, "epsilon_zeta": -100.746, "bb_type": "BI", "chi": -152.063, "glyco_bond": "anti", "C5prime_xyz": [ -1.416, 8.831, 0.066 ], "P_xyz": [ 1.113, 9.425, 0.449 ], "form": ".", "ssZp": 4.074, "Dp": 4.236, "splay_angle": 22.527, "splay_distance": 3.501, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 163.430, "theta": -147.570, "eta_prime": 175.740, "theta_prime": -147.535, "eta_base": -156.494, "theta_base": -115.745, "v0": 0.608, "v1": -21.730, "v2": 33.352, "v3": -33.936, "v4": 21.059, "amplitude": 35.000, "phase_angle": 17.649, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.828, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 190.421, 247.919, 186.524 ], "x_axis": [ 0.752, -0.450, -0.482 ], "y_axis": [ 0.544, 0.836, 0.067 ], "z_axis": [ 0.373, -0.313, 0.873 ], "quaternion": [ 0.930, 0.102, 0.230, -0.267 ] } }, { "index": 902, "index_chain": 902, "chain_name": "2", "nt_resnum": 1055, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1055", "linked_nts": [ "///2/1054", "///2/1056" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -167.563, "beta": -133.224, "gamma": 125.848, "delta": 81.859, "epsilon": -148.931, "zeta": -83.437, "epsilon_zeta": -65.494, "bb_type": "BI", "chi": -158.641, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.747, 0.448 ], "P_xyz": [ 1.033, 8.741, -0.498 ], "form": "A", "ssZp": 4.356, "Dp": 4.590, "splay_angle": 25.462, "splay_distance": 4.000, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 160.293, "theta": -146.218, "eta_prime": 176.889, "theta_prime": -152.814, "eta_base": -138.315, "theta_base": -134.036, "v0": 0.887, "v1": -22.429, "v2": 34.212, "v3": -34.666, "v4": 21.320, "amplitude": 35.821, "phase_angle": 17.237, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 191.943, 246.182, 189.155 ], "x_axis": [ 0.915, 0.118, -0.387 ], "y_axis": [ 0.073, 0.893, 0.445 ], "z_axis": [ 0.398, -0.435, 0.808 ], "quaternion": [ 0.951, 0.231, 0.206, 0.012 ] } }, { "index": 903, "index_chain": 903, "chain_name": "2", "nt_resnum": 1056, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1056", "linked_nts": [ "///2/1055", "///2/1057" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -54.237, "beta": 161.201, "gamma": 55.738, "delta": 81.911, "epsilon": -114.685, "zeta": -61.634, "epsilon_zeta": -53.052, "bb_type": "--", "chi": -159.079, "glyco_bond": "anti", "C5prime_xyz": [ -1.368, 8.717, 0.477 ], "P_xyz": [ 1.232, 9.004, 0.307 ], "form": ".", "ssZp": 4.186, "Dp": 4.732, "splay_angle": 57.275, "splay_distance": 7.969, "splay_ratio": 0.509, "d22": 4.353, "d64": 3.598, "eta": -178.988, "theta": -104.139, "eta_prime": -169.645, "theta_prime": -102.433, "eta_base": -138.046, "theta_base": -35.027, "v0": 2.611, "v1": -24.299, "v2": 35.544, "v3": -35.010, "v4": 20.447, "amplitude": 36.735, "phase_angle": 14.626, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.791, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 193.830, 243.647, 191.606 ], "x_axis": [ 0.826, 0.550, -0.122 ], "y_axis": [ -0.380, 0.705, 0.598 ], "z_axis": [ 0.415, -0.448, 0.792 ], "quaternion": [ 0.911, 0.287, 0.148, 0.255 ] } }, { "index": 904, "index_chain": 904, "chain_name": "2", "nt_resnum": 1057, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1057", "linked_nts": [ "///2/1056", "///2/1058" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -60.327, "beta": 174.029, "gamma": 46.382, "delta": 78.400, "epsilon": -145.616, "zeta": -47.727, "epsilon_zeta": -97.889, "bb_type": "BI", "chi": 46.409, "glyco_bond": "syn", "C5prime_xyz": [ -5.604, 4.130, 0.984 ], "P_xyz": [ -5.923, 1.570, 1.446 ], "form": ".", "ssZp": -3.373, "Dp": 4.519, "splay_angle": 111.284, "splay_distance": 13.778, "splay_ratio": 0.826, "d22": null, "d64": null, "eta": 154.022, "theta": -113.497, "eta_prime": -178.193, "theta_prime": -157.950, "eta_base": -91.545, "theta_base": 133.943, "v0": -4.146, "v1": -19.198, "v2": 33.816, "v3": -37.196, "v4": 26.026, "amplitude": 37.263, "phase_angle": 24.836, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.395, "filter_rmsd": 0.069, "frame": { "rmsd": 0.008, "origin": [ 194.875, 249.430, 196.988 ], "x_axis": [ 0.606, 0.316, -0.730 ], "y_axis": [ 0.204, -0.949, -0.241 ], "z_axis": [ -0.769, -0.003, -0.639 ], "quaternion": [ -0.067, 0.894, 0.146, -0.419 ] } }, { "index": 905, "index_chain": 905, "chain_name": "2", "nt_resnum": 1058, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1058", "linked_nts": [ "///2/1057", "///2/1059" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 174.435, "beta": 138.435, "gamma": 45.187, "delta": 84.060, "epsilon": -137.714, "zeta": -70.709, "epsilon_zeta": -67.005, "bb_type": "BI", "chi": -171.298, "glyco_bond": "anti", "C5prime_xyz": [ -1.580, 8.616, 1.193 ], "P_xyz": [ 1.025, 8.563, 1.527 ], "form": ".", "ssZp": 4.466, "Dp": 4.548, "splay_angle": 25.267, "splay_distance": 3.973, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 14.846, "theta": -124.426, "eta_prime": 42.472, "theta_prime": -126.396, "eta_base": 21.367, "theta_base": -81.559, "v0": -0.433, "v1": -20.333, "v2": 32.130, "v3": -33.319, "v4": 21.304, "amplitude": 34.053, "phase_angle": 19.349, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.564, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 200.557, 237.233, 199.949 ], "x_axis": [ -0.809, -0.586, 0.058 ], "y_axis": [ -0.511, 0.748, 0.424 ], "z_axis": [ -0.291, 0.313, -0.904 ], "quaternion": [ -0.094, -0.295, 0.930, 0.198 ] } }, { "index": 906, "index_chain": 906, "chain_name": "2", "nt_resnum": 1059, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1059", "linked_nts": [ "///2/1058", "///2/1060" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -62.771, "beta": 166.365, "gamma": 50.203, "delta": 81.601, "epsilon": -102.723, "zeta": -104.687, "epsilon_zeta": 1.964, "bb_type": "--", "chi": -158.957, "glyco_bond": "anti", "C5prime_xyz": [ -1.265, 8.747, 0.466 ], "P_xyz": [ 1.341, 9.026, 0.518 ], "form": ".", "ssZp": 4.056, "Dp": 4.751, "splay_angle": 19.850, "splay_distance": 3.254, "splay_ratio": 0.181, "d22": null, "d64": null, "eta": 171.163, "theta": -109.322, "eta_prime": -171.958, "theta_prime": -114.322, "eta_base": -109.348, "theta_base": -83.229, "v0": 3.252, "v1": -25.015, "v2": 36.081, "v3": -35.205, "v4": 20.159, "amplitude": 37.140, "phase_angle": 13.713, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.907, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 197.705, 236.993, 197.194 ], "x_axis": [ -0.911, 0.197, 0.363 ], "y_axis": [ 0.268, 0.951, 0.156 ], "z_axis": [ -0.314, 0.240, -0.919 ], "quaternion": [ -0.174, 0.120, 0.972, 0.102 ] } }, { "index": 907, "index_chain": 907, "chain_name": "2", "nt_resnum": 1060, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1060", "linked_nts": [ "///2/1059", "///2/1061" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BII,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 55.653, "beta": 174.588, "gamma": -77.437, "delta": 148.843, "epsilon": -128.575, "zeta": 165.235, "epsilon_zeta": 66.190, "bb_type": "BII", "chi": 71.847, "glyco_bond": "syn", "C5prime_xyz": [ -5.138, 4.249, 1.766 ], "P_xyz": [ -7.441, 3.263, 2.547 ], "form": ".", "ssZp": -1.415, "Dp": 1.466, "splay_angle": 88.057, "splay_distance": 13.873, "splay_ratio": 0.695, "d22": null, "d64": null, "eta": 167.312, "theta": 132.402, "eta_prime": -177.697, "theta_prime": 104.257, "eta_base": -137.620, "theta_base": 74.174, "v0": -21.137, "v1": 35.972, "v2": -36.202, "v3": 24.968, "v4": -2.593, "amplitude": 37.454, "phase_angle": 165.147, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.492, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 195.489, 238.945, 195.827 ], "x_axis": [ -0.287, -0.952, -0.108 ], "y_axis": [ 0.218, 0.045, -0.975 ], "z_axis": [ 0.933, -0.303, 0.195 ], "quaternion": [ -0.488, 0.344, -0.533, 0.599 ] } }, { "index": 908, "index_chain": 908, "chain_name": "2", "nt_resnum": 1061, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1061", "linked_nts": [ "///2/1060", "///2/1062" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 35.781, "beta": -157.881, "gamma": 168.205, "delta": 80.550, "epsilon": -144.958, "zeta": 63.182, "epsilon_zeta": 151.860, "bb_type": "--", "chi": -153.996, "glyco_bond": "anti", "C5prime_xyz": [ -1.447, 8.767, 0.160 ], "P_xyz": [ -0.094, 9.909, -1.770 ], "form": ".", "ssZp": 4.241, "Dp": 4.652, "splay_angle": 97.201, "splay_distance": 15.248, "splay_ratio": 0.753, "d22": null, "d64": null, "eta": 79.300, "theta": -5.656, "eta_prime": 69.456, "theta_prime": -47.158, "eta_base": 95.257, "theta_base": -55.959, "v0": 1.781, "v1": -24.037, "v2": 35.910, "v3": -35.891, "v4": 21.511, "amplitude": 37.347, "phase_angle": 15.949, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 205.843, 240.051, 186.661 ], "x_axis": [ -0.054, -0.434, 0.899 ], "y_axis": [ -0.909, 0.395, 0.136 ], "z_axis": [ -0.414, -0.810, -0.416 ], "quaternion": [ -0.481, -0.492, 0.683, -0.247 ] } }, { "index": 909, "index_chain": 909, "chain_name": "2", "nt_resnum": 1062, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1062", "linked_nts": [ "///2/1061", "///2/1063" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 101.547, "beta": 122.205, "gamma": -179.577, "delta": 80.316, "epsilon": -143.216, "zeta": -59.297, "epsilon_zeta": -83.918, "bb_type": "BI", "chi": -158.695, "glyco_bond": "anti", "C5prime_xyz": [ -1.335, 8.720, 0.411 ], "P_xyz": [ -1.689, 10.971, -0.888 ], "form": ".", "ssZp": 4.393, "Dp": 4.698, "splay_angle": 44.858, "splay_distance": 6.757, "splay_ratio": 0.382, "d22": null, "d64": null, "eta": 105.876, "theta": 175.193, "eta_prime": 140.963, "theta_prime": -165.781, "eta_base": -172.464, "theta_base": -118.725, "v0": 2.813, "v1": -25.268, "v2": 36.896, "v3": -36.236, "v4": 21.079, "amplitude": 38.100, "phase_angle": 14.437, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5j", "suiteness": 0.164, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 192.249, 239.023, 193.490 ], "x_axis": [ 0.064, 0.928, 0.367 ], "y_axis": [ 0.392, 0.315, -0.865 ], "z_axis": [ -0.918, 0.199, -0.344 ], "quaternion": [ 0.509, -0.523, -0.631, 0.264 ] } }, { "index": 910, "index_chain": 910, "chain_name": "2", "nt_resnum": 1063, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1063", "linked_nts": [ "///2/1062", "///2/1064" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -70.627, "beta": -166.580, "gamma": 49.113, "delta": 81.139, "epsilon": -125.101, "zeta": -51.593, "epsilon_zeta": -73.507, "bb_type": "--", "chi": 177.309, "glyco_bond": "anti", "C5prime_xyz": [ -1.186, 8.288, 1.849 ], "P_xyz": [ 1.100, 8.129, 3.133 ], "form": ".", "ssZp": 4.795, "Dp": 4.790, "splay_angle": 40.857, "splay_distance": 6.346, "splay_ratio": 0.353, "d22": 4.245, "d64": 4.952, "eta": 173.939, "theta": -107.266, "eta_prime": -170.906, "theta_prime": -99.719, "eta_base": -120.062, "theta_base": -58.468, "v0": 6.080, "v1": -27.687, "v2": 37.616, "v3": -35.094, "v4": 18.301, "amplitude": 38.153, "phase_angle": 9.623, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.757, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 188.375, 244.321, 191.882 ], "x_axis": [ 0.858, 0.493, -0.145 ], "y_axis": [ 0.347, -0.764, -0.544 ], "z_axis": [ -0.379, 0.417, -0.826 ], "quaternion": [ -0.259, 0.928, 0.226, -0.141 ] } }, { "index": 911, "index_chain": 911, "chain_name": "2", "nt_resnum": 1064, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1064", "linked_nts": [ "///2/1063", "///2/1065" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop", "alpha": -68.664, "beta": -174.625, "gamma": 55.838, "delta": 79.969, "epsilon": -144.020, "zeta": -75.366, "epsilon_zeta": -68.654, "bb_type": "BI", "chi": -160.485, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.812, 0.539 ], "P_xyz": [ 1.105, 9.372, 0.952 ], "form": "A", "ssZp": 4.421, "Dp": 4.646, "splay_angle": 27.277, "splay_distance": 4.350, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 165.693, "theta": -146.070, "eta_prime": -165.761, "theta_prime": -143.377, "eta_base": -101.780, "theta_base": -115.361, "v0": 0.782, "v1": -23.365, "v2": 35.794, "v3": -36.323, "v4": 22.408, "amplitude": 37.517, "phase_angle": 17.429, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.547, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 190.987, 247.729, 187.209 ], "x_axis": [ 0.728, -0.463, -0.505 ], "y_axis": [ -0.579, -0.810, -0.092 ], "z_axis": [ -0.366, 0.360, -0.858 ], "quaternion": [ -0.123, 0.921, -0.283, -0.237 ] } }, { "index": 912, "index_chain": 912, "chain_name": "2", "nt_resnum": 1065, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1065", "linked_nts": [ "///2/1064", "///2/1066" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet", "alpha": -66.850, "beta": 173.216, "gamma": 53.178, "delta": 80.919, "epsilon": -153.994, "zeta": -75.401, "epsilon_zeta": -78.593, "bb_type": "BI", "chi": -175.537, "glyco_bond": "anti", "C5prime_xyz": [ -1.721, 8.600, 1.403 ], "P_xyz": [ 0.735, 9.080, 2.182 ], "form": "A", "ssZp": 4.523, "Dp": 4.547, "splay_angle": 23.602, "splay_distance": 3.762, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 163.648, "theta": -152.226, "eta_prime": 177.010, "theta_prime": -150.019, "eta_base": -141.032, "theta_base": -133.982, "v0": 0.213, "v1": -22.484, "v2": 34.928, "v3": -35.774, "v4": 22.404, "amplitude": 36.781, "phase_angle": 18.267, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.977, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 191.100, 249.397, 183.193 ], "x_axis": [ 0.440, -0.897, -0.035 ], "y_axis": [ -0.842, -0.426, 0.332 ], "z_axis": [ -0.312, -0.117, -0.943 ], "quaternion": [ 0.134, 0.838, -0.519, -0.103 ] } }, { "index": 913, "index_chain": 913, "chain_name": "2", "nt_resnum": 1066, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1066", "linked_nts": [ "///2/1065", "///2/1067" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -68.574, "beta": -173.528, "gamma": 51.491, "delta": 82.874, "epsilon": -168.010, "zeta": -74.561, "epsilon_zeta": -93.449, "bb_type": "BI", "chi": -158.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.750, 0.467 ], "P_xyz": [ 1.078, 9.265, 1.128 ], "form": "A", "ssZp": 4.270, "Dp": 4.403, "splay_angle": 19.993, "splay_distance": 3.445, "splay_ratio": 0.182, "d22": 4.184, "d64": 4.434, "eta": 170.860, "theta": -130.780, "eta_prime": -179.772, "theta_prime": -139.878, "eta_base": -153.753, "theta_base": -116.346, "v0": 0.992, "v1": -22.085, "v2": 33.552, "v3": -33.928, "v4": 20.800, "amplitude": 35.093, "phase_angle": 17.041, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.904, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 192.061, 250.330, 179.678 ], "x_axis": [ -0.015, -0.979, 0.202 ], "y_axis": [ -0.967, 0.066, 0.247 ], "z_axis": [ -0.255, -0.191, -0.948 ], "quaternion": [ -0.160, -0.683, 0.712, 0.020 ] } }, { "index": 914, "index_chain": 914, "chain_name": "2", "nt_resnum": 1067, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1067", "linked_nts": [ "///2/1066", "///2/1068" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": 159.840, "beta": -160.277, "gamma": 165.542, "delta": 81.542, "epsilon": -125.626, "zeta": -62.406, "epsilon_zeta": -63.220, "bb_type": "--", "chi": -175.947, "glyco_bond": "anti", "C5prime_xyz": [ -1.255, 8.521, 1.476 ], "P_xyz": [ 0.666, 9.961, 0.432 ], "form": ".", "ssZp": 4.659, "Dp": 4.720, "splay_angle": 33.641, "splay_distance": 5.235, "splay_ratio": 0.290, "d22": null, "d64": null, "eta": 159.914, "theta": -136.883, "eta_prime": 174.652, "theta_prime": -131.340, "eta_base": -142.820, "theta_base": -79.054, "v0": 3.240, "v1": -24.796, "v2": 35.768, "v3": -34.855, "v4": 19.928, "amplitude": 36.808, "phase_angle": 13.657, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.656, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 193.026, 248.688, 176.807 ], "x_axis": [ -0.494, -0.786, 0.371 ], "y_axis": [ -0.846, 0.533, 0.003 ], "z_axis": [ -0.200, -0.312, -0.929 ], "quaternion": [ -0.166, -0.475, 0.860, -0.090 ] } }, { "index": 915, "index_chain": 915, "chain_name": "2", "nt_resnum": 1068, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1068", "linked_nts": [ "///2/1067", "///2/1069" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -60.553, "beta": 159.087, "gamma": 58.560, "delta": 80.804, "epsilon": -130.581, "zeta": -143.672, "epsilon_zeta": 13.090, "bb_type": "--", "chi": -170.765, "glyco_bond": "anti", "C5prime_xyz": [ -1.535, 8.663, 1.144 ], "P_xyz": [ 1.057, 9.050, 1.205 ], "form": ".", "ssZp": 4.607, "Dp": 4.706, "splay_angle": 53.620, "splay_distance": 8.032, "splay_ratio": 0.451, "d22": null, "d64": null, "eta": 161.949, "theta": 155.857, "eta_prime": -168.514, "theta_prime": 163.444, "eta_base": -92.922, "theta_base": 161.682, "v0": 1.436, "v1": -23.673, "v2": 35.679, "v3": -35.834, "v4": 21.710, "amplitude": 37.203, "phase_angle": 16.456, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.644, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 189.463, 245.202, 175.209 ], "x_axis": [ -0.972, 0.050, 0.230 ], "y_axis": [ -0.031, 0.942, -0.335 ], "z_axis": [ -0.234, -0.332, -0.914 ], "quaternion": [ -0.119, 0.005, 0.978, -0.170 ] } }, { "index": 916, "index_chain": 916, "chain_name": "2", "nt_resnum": 1069, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1069", "linked_nts": [ "///2/1068", "///2/1070" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -65.824, "beta": 147.907, "gamma": 54.621, "delta": 81.549, "epsilon": -141.124, "zeta": -67.168, "epsilon_zeta": -73.956, "bb_type": "BI", "chi": -162.222, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.687, 0.662 ], "P_xyz": [ 1.236, 8.809, 0.318 ], "form": ".", "ssZp": 4.474, "Dp": 4.683, "splay_angle": 31.062, "splay_distance": 4.830, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 174.783, "theta": -128.771, "eta_prime": 166.259, "theta_prime": -130.268, "eta_base": 152.393, "theta_base": -95.571, "v0": 3.074, "v1": -24.849, "v2": 35.968, "v3": -35.181, "v4": 20.253, "amplitude": 37.062, "phase_angle": 13.957, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.802, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 195.690, 242.905, 170.687 ], "x_axis": [ -0.850, -0.173, 0.498 ], "y_axis": [ -0.379, 0.856, -0.351 ], "z_axis": [ -0.365, -0.487, -0.793 ], "quaternion": [ -0.231, -0.148, 0.935, -0.224 ] } }, { "index": 917, "index_chain": 917, "chain_name": "2", "nt_resnum": 1070, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1070", "linked_nts": [ "///2/1069", "///2/1071" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -68.701, "beta": 175.737, "gamma": 55.880, "delta": 82.468, "epsilon": -155.426, "zeta": -68.694, "epsilon_zeta": -86.732, "bb_type": "BI", "chi": -171.003, "glyco_bond": "anti", "C5prime_xyz": [ -1.402, 8.565, 1.184 ], "P_xyz": [ 1.144, 8.857, 1.756 ], "form": ".", "ssZp": 4.533, "Dp": 4.564, "splay_angle": 40.403, "splay_distance": 6.087, "splay_ratio": 0.346, "d22": null, "d64": null, "eta": 164.420, "theta": -105.735, "eta_prime": -175.730, "theta_prime": -106.801, "eta_base": -118.621, "theta_base": -57.020, "v0": 2.654, "v1": -23.925, "v2": 34.904, "v3": -34.342, "v4": 20.010, "amplitude": 36.051, "phase_angle": 14.496, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 191.834, 240.556, 168.973 ], "x_axis": [ -0.664, 0.653, 0.364 ], "y_axis": [ 0.416, 0.727, -0.546 ], "z_axis": [ -0.622, -0.211, -0.754 ], "quaternion": [ -0.278, 0.301, 0.887, -0.213 ] } }, { "index": 918, "index_chain": 918, "chain_name": "2", "nt_resnum": 1071, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1071", "linked_nts": [ "///2/1070", "///2/1072" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": 172.303, "beta": -134.124, "gamma": 141.495, "delta": 81.868, "epsilon": -134.508, "zeta": -76.064, "epsilon_zeta": -58.444, "bb_type": "BI", "chi": -173.829, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.544, 1.354 ], "P_xyz": [ 1.021, 8.906, 0.320 ], "form": "A", "ssZp": 4.653, "Dp": 4.705, "splay_angle": 27.085, "splay_distance": 4.220, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 151.516, "theta": -135.053, "eta_prime": -171.661, "theta_prime": -139.695, "eta_base": -91.733, "theta_base": -110.493, "v0": 3.628, "v1": -25.053, "v2": 35.795, "v3": -34.703, "v4": 19.601, "amplitude": 36.751, "phase_angle": 13.093, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 187.594, 244.212, 166.583 ], "x_axis": [ 0.122, 0.914, -0.388 ], "y_axis": [ 0.733, -0.346, -0.585 ], "z_axis": [ -0.669, -0.213, -0.712 ], "quaternion": [ -0.126, 0.738, 0.558, -0.358 ] } }, { "index": 919, "index_chain": 919, "chain_name": "2", "nt_resnum": 1072, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1072", "linked_nts": [ "///2/1071", "///2/1073" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -57.912, "beta": 168.071, "gamma": 55.265, "delta": 82.008, "epsilon": -106.279, "zeta": -52.148, "epsilon_zeta": -54.131, "bb_type": "--", "chi": -160.944, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 8.701, 0.584 ], "P_xyz": [ 1.224, 9.077, 0.625 ], "form": ".", "ssZp": 4.167, "Dp": 4.727, "splay_angle": 62.382, "splay_distance": 9.775, "splay_ratio": 0.518, "d22": 4.189, "d64": 4.995, "eta": -179.653, "theta": -86.190, "eta_prime": -165.838, "theta_prime": -85.165, "eta_base": -120.952, "theta_base": -55.899, "v0": 2.691, "v1": -24.328, "v2": 35.483, "v3": -34.912, "v4": 20.337, "amplitude": 36.650, "phase_angle": 14.494, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.857, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 184.690, 245.440, 163.779 ], "x_axis": [ 0.579, 0.457, -0.675 ], "y_axis": [ 0.443, -0.871, -0.210 ], "z_axis": [ -0.685, -0.178, -0.707 ], "quaternion": [ -0.009, 0.888, 0.253, -0.383 ] } }, { "index": 920, "index_chain": 920, "chain_name": "2", "nt_resnum": 1073, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1073", "linked_nts": [ "///2/1072", "///2/1074" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -78.884, "beta": -151.675, "gamma": 43.046, "delta": 80.165, "epsilon": -148.114, "zeta": -76.739, "epsilon_zeta": -71.376, "bb_type": "BI", "chi": -164.217, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.679, 0.778 ], "P_xyz": [ 0.845, 9.179, 2.083 ], "form": "A", "ssZp": 4.538, "Dp": 4.661, "splay_angle": 21.872, "splay_distance": 3.518, "splay_ratio": 0.193, "d22": 4.387, "d64": 4.439, "eta": 151.851, "theta": -154.231, "eta_prime": 179.317, "theta_prime": -148.034, "eta_base": -131.432, "theta_base": -125.375, "v0": 2.851, "v1": -25.138, "v2": 36.643, "v3": -36.013, "v4": 20.914, "amplitude": 37.830, "phase_angle": 14.392, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.207, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 187.994, 242.749, 154.981 ], "x_axis": [ 0.847, -0.237, 0.476 ], "y_axis": [ -0.529, -0.463, 0.711 ], "z_axis": [ 0.052, -0.854, -0.518 ], "quaternion": [ 0.465, 0.841, -0.228, 0.157 ] } }, { "index": 921, "index_chain": 921, "chain_name": "2", "nt_resnum": 1074, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1074", "linked_nts": [ "///2/1073", "///2/1075" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -65.150, "beta": 173.189, "gamma": 54.786, "delta": 80.671, "epsilon": -156.038, "zeta": -71.075, "epsilon_zeta": -84.963, "bb_type": "BI", "chi": -161.954, "glyco_bond": "anti", "C5prime_xyz": [ -1.454, 8.810, 0.624 ], "P_xyz": [ 1.097, 9.336, 0.911 ], "form": "A", "ssZp": 4.413, "Dp": 4.537, "splay_angle": 22.506, "splay_distance": 3.624, "splay_ratio": 0.197, "d22": 4.483, "d64": 4.539, "eta": 167.379, "theta": -149.296, "eta_prime": 178.801, "theta_prime": -149.023, "eta_base": -150.875, "theta_base": -126.044, "v0": 0.092, "v1": -22.465, "v2": 34.975, "v3": -35.905, "v4": 22.577, "amplitude": 36.872, "phase_angle": 18.457, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.972, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 189.433, 240.945, 152.326 ], "x_axis": [ 0.459, -0.244, 0.854 ], "y_axis": [ -0.856, -0.378, 0.353 ], "z_axis": [ 0.236, -0.893, -0.382 ], "quaternion": [ 0.418, 0.745, -0.369, 0.366 ] } }, { "index": 922, "index_chain": 922, "chain_name": "2", "nt_resnum": 1075, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1075", "linked_nts": [ "///2/1074", "///2/1076" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -65.315, "beta": 175.493, "gamma": 54.347, "delta": 80.047, "epsilon": -138.862, "zeta": -32.667, "epsilon_zeta": -106.195, "bb_type": "--", "chi": -157.460, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.837, 0.361 ], "P_xyz": [ 1.158, 9.366, 0.522 ], "form": ".", "ssZp": 4.296, "Dp": 4.653, "splay_angle": 24.982, "splay_distance": 4.505, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 172.105, "theta": -113.945, "eta_prime": -177.224, "theta_prime": -129.760, "eta_base": -142.988, "theta_base": -119.946, "v0": 0.287, "v1": -22.763, "v2": 35.337, "v3": -36.150, "v4": 22.604, "amplitude": 37.193, "phase_angle": 18.175, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.953, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 191.742, 238.495, 150.984 ], "x_axis": [ -0.049, -0.363, 0.931 ], "y_axis": [ -0.951, -0.269, -0.155 ], "z_axis": [ 0.306, -0.892, -0.332 ], "quaternion": [ 0.296, 0.623, -0.527, 0.497 ] } }, { "index": 923, "index_chain": 923, "chain_name": "2", "nt_resnum": 1076, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1076", "linked_nts": [ "///2/1075", "///2/1077" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -147.499, "beta": 113.340, "gamma": 154.337, "delta": 81.177, "epsilon": -133.017, "zeta": -67.036, "epsilon_zeta": -65.981, "bb_type": "BI", "chi": 178.708, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.340, 1.754 ], "P_xyz": [ -0.913, 10.569, 0.451 ], "form": "A", "ssZp": 4.769, "Dp": 4.760, "splay_angle": 27.331, "splay_distance": 4.295, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 160.472, "theta": -174.485, "eta_prime": 171.112, "theta_prime": -162.930, "eta_base": -160.348, "theta_base": -118.874, "v0": 5.405, "v1": -26.994, "v2": 37.180, "v3": -35.078, "v4": 18.713, "amplitude": 37.825, "phase_angle": 10.589, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 194.742, 235.180, 151.540 ], "x_axis": [ -0.444, -0.081, 0.892 ], "y_axis": [ -0.884, -0.120, -0.451 ], "z_axis": [ 0.144, -0.989, -0.018 ], "quaternion": [ 0.323, 0.417, -0.579, 0.622 ] } }, { "index": 924, "index_chain": 924, "chain_name": "2", "nt_resnum": 1077, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1077", "linked_nts": [ "///2/1076", "///2/1078" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet", "alpha": -64.136, "beta": 179.975, "gamma": 46.501, "delta": 79.333, "epsilon": -151.571, "zeta": -28.859, "epsilon_zeta": -122.712, "bb_type": "BI", "chi": -173.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.571, 1.309 ], "P_xyz": [ 0.848, 9.039, 2.243 ], "form": ".", "ssZp": 4.619, "Dp": 4.630, "splay_angle": 28.575, "splay_distance": 5.105, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 160.863, "theta": -118.358, "eta_prime": 179.117, "theta_prime": -129.731, "eta_base": -123.118, "theta_base": -112.994, "v0": 1.619, "v1": -24.359, "v2": 36.593, "v3": -36.658, "v4": 22.111, "amplitude": 38.112, "phase_angle": 16.234, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.807, "filter_rmsd": 0.040, "frame": { "rmsd": 0.004, "origin": [ 195.151, 231.817, 154.180 ], "x_axis": [ -0.951, 0.101, 0.294 ], "y_axis": [ -0.292, 0.035, -0.956 ], "z_axis": [ -0.107, -0.994, -0.004 ], "quaternion": [ -0.142, -0.068, 0.705, -0.691 ] } }, { "index": 925, "index_chain": 925, "chain_name": "2", "nt_resnum": 1078, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1078", "linked_nts": [ "///2/1077", "///2/1079" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,multiplet,A-minor", "alpha": -153.562, "beta": 123.190, "gamma": 162.531, "delta": 81.177, "epsilon": -139.797, "zeta": -56.972, "epsilon_zeta": -82.825, "bb_type": "BI", "chi": 161.516, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 7.793, 2.544 ], "P_xyz": [ -0.641, 10.283, 2.274 ], "form": ".", "ssZp": 4.533, "Dp": 4.753, "splay_angle": 29.446, "splay_distance": 4.938, "splay_ratio": 0.278, "d22": 4.972, "d64": 5.774, "eta": 172.231, "theta": -172.141, "eta_prime": -177.079, "theta_prime": -159.975, "eta_base": -136.798, "theta_base": -133.643, "v0": 8.235, "v1": -29.781, "v2": 38.904, "v3": -35.117, "v4": 16.948, "amplitude": 39.171, "phase_angle": 6.692, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.035, "filter_rmsd": 0.069, "frame": { "rmsd": 0.013, "origin": [ 194.017, 228.088, 157.477 ], "x_axis": [ -0.970, 0.194, -0.149 ], "y_axis": [ 0.176, 0.131, -0.976 ], "z_axis": [ -0.170, -0.972, -0.161 ], "quaternion": [ -0.007, 0.123, 0.752, -0.648 ] } }, { "index": 926, "index_chain": 926, "chain_name": "2", "nt_resnum": 1079, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1079", "linked_nts": [ "///2/1078", "///2/1080" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -69.832, "beta": -158.550, "gamma": 48.314, "delta": 80.731, "epsilon": -145.046, "zeta": -55.351, "epsilon_zeta": -89.695, "bb_type": "BI", "chi": -176.083, "glyco_bond": "anti", "C5prime_xyz": [ -1.914, 8.778, 1.320 ], "P_xyz": [ -0.091, 9.422, 3.093 ], "form": ".", "ssZp": 4.296, "Dp": 4.391, "splay_angle": 32.456, "splay_distance": 5.058, "splay_ratio": 0.279, "d22": null, "d64": null, "eta": 175.119, "theta": -129.467, "eta_prime": -170.895, "theta_prime": -113.442, "eta_base": -139.691, "theta_base": -48.626, "v0": -6.524, "v1": -16.093, "v2": 31.107, "v3": -35.745, "v4": 26.672, "amplitude": 35.532, "phase_angle": 28.899, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.596, "filter_rmsd": 0.066, "frame": { "rmsd": 0.009, "origin": [ 191.873, 224.561, 160.188 ], "x_axis": [ -0.692, 0.412, -0.593 ], "y_axis": [ 0.702, 0.190, -0.687 ], "z_axis": [ -0.170, -0.891, -0.420 ], "quaternion": [ 0.139, 0.367, 0.759, -0.520 ] } }, { "index": 927, "index_chain": 927, "chain_name": "2", "nt_resnum": 1080, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1080", "linked_nts": [ "///2/1079", "///2/1081" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,ss-non-loop", "alpha": -69.796, "beta": 168.105, "gamma": 72.354, "delta": 149.636, "epsilon": -114.869, "zeta": 140.471, "epsilon_zeta": 104.660, "bb_type": "BII", "chi": -131.843, "glyco_bond": "anti", "C5prime_xyz": [ -1.876, 8.653, -0.531 ], "P_xyz": [ 0.688, 9.017, -0.061 ], "form": ".", "ssZp": 1.247, "Dp": 1.239, "splay_angle": 51.234, "splay_distance": 8.277, "splay_ratio": 0.434, "d22": null, "d64": null, "eta": -178.732, "theta": 149.277, "eta_prime": -129.531, "theta_prime": 127.677, "eta_base": -58.928, "theta_base": 151.671, "v0": -20.792, "v1": 36.094, "v2": -36.720, "v3": 25.637, "v4": -3.211, "amplitude": 37.833, "phase_angle": 166.067, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.540, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 190.425, 223.429, 155.475 ], "x_axis": [ 0.322, 0.394, -0.861 ], "y_axis": [ 0.906, -0.392, 0.160 ], "z_axis": [ -0.274, -0.831, -0.484 ], "quaternion": [ 0.334, 0.741, 0.439, -0.383 ] } }, { "index": 928, "index_chain": 928, "chain_name": "2", "nt_resnum": 1081, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1081", "linked_nts": [ "///2/1080", "///2/1082" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,ribose-zipper,phosphate", "alpha": -68.697, "beta": 141.614, "gamma": 45.440, "delta": 79.655, "epsilon": -153.010, "zeta": -66.480, "epsilon_zeta": -86.531, "bb_type": "BI", "chi": -165.602, "glyco_bond": "anti", "C5prime_xyz": [ -1.711, 8.760, 0.821 ], "P_xyz": [ 0.889, 9.051, 0.903 ], "form": ".", "ssZp": 4.462, "Dp": 4.543, "splay_angle": 28.230, "splay_distance": 5.179, "splay_ratio": 0.263, "d22": null, "d64": null, "eta": -178.537, "theta": -119.729, "eta_prime": 177.775, "theta_prime": -140.157, "eta_base": -164.106, "theta_base": -148.363, "v0": -1.269, "v1": -21.529, "v2": 34.816, "v3": -36.523, "v4": 23.810, "amplitude": 37.171, "phase_angle": 20.504, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.636, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 187.786, 222.076, 163.202 ], "x_axis": [ -0.407, -0.476, -0.780 ], "y_axis": [ 0.877, -0.443, -0.187 ], "z_axis": [ -0.257, -0.760, 0.598 ], "quaternion": [ -0.432, -0.331, -0.302, 0.782 ] } }, { "index": 929, "index_chain": 929, "chain_name": "2", "nt_resnum": 1082, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1082", "linked_nts": [ "///2/1081", "///2/1083" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,A-minor,ribose-zipper,cap-acceptor,splayed-apart", "alpha": 165.657, "beta": 159.955, "gamma": 173.024, "delta": 81.482, "epsilon": -114.098, "zeta": -101.469, "epsilon_zeta": -12.630, "bb_type": "--", "chi": -170.793, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.597, 1.150 ], "P_xyz": [ -0.626, 10.827, 0.082 ], "form": ".", "ssZp": 4.520, "Dp": 4.712, "splay_angle": 93.118, "splay_distance": 14.798, "splay_ratio": 0.729, "d22": null, "d64": null, "eta": 154.621, "theta": 174.594, "eta_prime": 160.476, "theta_prime": 155.569, "eta_base": 167.513, "theta_base": 137.558, "v0": 1.364, "v1": -23.139, "v2": 34.888, "v3": -35.094, "v4": 21.271, "amplitude": 36.391, "phase_angle": 16.528, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.767, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 183.947, 221.238, 166.575 ], "x_axis": [ -0.100, -0.256, -0.962 ], "y_axis": [ 0.927, -0.375, 0.004 ], "z_axis": [ -0.361, -0.891, 0.274 ], "quaternion": [ -0.447, -0.500, -0.336, 0.661 ] } }, { "index": 930, "index_chain": 930, "chain_name": "2", "nt_resnum": 1083, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1083", "linked_nts": [ "///2/1082", "///2/1084" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -63.728, "beta": 147.702, "gamma": -73.959, "delta": 146.509, "epsilon": -138.100, "zeta": 51.275, "epsilon_zeta": 170.625, "bb_type": "--", "chi": -105.361, "glyco_bond": "anti", "C5prime_xyz": [ -2.249, 8.189, -1.902 ], "P_xyz": [ -1.998, 10.794, -2.091 ], "form": ".", "ssZp": 1.628, "Dp": 1.699, "splay_angle": 142.028, "splay_distance": 19.590, "splay_ratio": 0.946, "d22": null, "d64": null, "eta": 46.012, "theta": 46.242, "eta_prime": 47.825, "theta_prime": 14.926, "eta_base": 12.681, "theta_base": -11.746, "v0": -21.955, "v1": 35.958, "v2": -35.486, "v3": 23.741, "v4": -1.316, "amplitude": 37.057, "phase_angle": 163.256, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 185.113, 217.423, 180.825 ], "x_axis": [ 0.840, 0.149, 0.522 ], "y_axis": [ 0.526, 0.017, -0.850 ], "z_axis": [ -0.136, 0.989, -0.064 ], "quaternion": [ 0.669, -0.687, -0.246, -0.141 ] } }, { "index": 931, "index_chain": 931, "chain_name": "2", "nt_resnum": 1084, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1084", "linked_nts": [ "///2/1083", "///2/1085" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 70.858, "beta": 108.979, "gamma": 170.282, "delta": 81.513, "epsilon": -179.270, "zeta": 155.774, "epsilon_zeta": 24.956, "bb_type": "--", "chi": -140.526, "glyco_bond": "anti", "C5prime_xyz": [ -1.466, 8.720, -0.652 ], "P_xyz": [ -2.247, 10.169, -2.695 ], "form": ".", "ssZp": 3.826, "Dp": 4.340, "splay_angle": 113.333, "splay_distance": 16.864, "splay_ratio": 0.837, "d22": null, "d64": null, "eta": 65.566, "theta": -3.894, "eta_prime": 73.682, "theta_prime": -9.880, "eta_base": 104.885, "theta_base": -38.348, "v0": 0.941, "v1": -22.761, "v2": 34.658, "v3": -35.115, "v4": 21.573, "amplitude": 36.277, "phase_angle": 17.184, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6j", "suiteness": 0.506, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 190.088, 216.845, 161.886 ], "x_axis": [ 0.853, -0.391, 0.347 ], "y_axis": [ -0.440, -0.179, 0.880 ], "z_axis": [ -0.282, -0.903, -0.325 ], "quaternion": [ 0.581, 0.768, -0.271, 0.021 ] } }, { "index": 932, "index_chain": 932, "chain_name": "2", "nt_resnum": 1085, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1085", "linked_nts": [ "///2/1084", "///2/1086" ], "nt_type": "RNA", "dbn": "<", "summary": "pseudoknotted,anti,~C2'-endo,BII,isolated-canonical,non-pair-contact,cap-acceptor,phosphate,splayed-apart", "alpha": -66.804, "beta": 148.487, "gamma": -61.490, "delta": 150.595, "epsilon": -89.977, "zeta": 135.956, "epsilon_zeta": 134.067, "bb_type": "BII", "chi": -142.220, "glyco_bond": "anti", "C5prime_xyz": [ -1.586, 8.705, 0.055 ], "P_xyz": [ -1.146, 10.727, 1.665 ], "form": ".", "ssZp": 0.604, "Dp": 0.632, "splay_angle": 107.396, "splay_distance": 16.264, "splay_ratio": 0.806, "d22": null, "d64": null, "eta": 94.385, "theta": 157.152, "eta_prime": 115.648, "theta_prime": 118.055, "eta_base": 152.739, "theta_base": 99.017, "v0": -18.835, "v1": 34.767, "v2": -36.502, "v3": 26.581, "v4": -5.056, "amplitude": 37.193, "phase_angle": 168.937, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 184.740, 213.443, 177.514 ], "x_axis": [ 0.993, -0.112, -0.031 ], "y_axis": [ -0.053, -0.202, -0.978 ], "z_axis": [ 0.103, 0.973, -0.207 ], "quaternion": [ 0.629, -0.775, 0.053, -0.023 ] } }, { "index": 933, "index_chain": 933, "chain_name": "2", "nt_resnum": 1086, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1086", "linked_nts": [ "///2/1085", "///2/1087" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 69.380, "beta": -138.254, "gamma": 53.088, "delta": 145.320, "epsilon": -117.488, "zeta": -57.448, "epsilon_zeta": -60.040, "bb_type": "--", "chi": -121.617, "glyco_bond": "anti", "C5prime_xyz": [ -2.203, 8.629, -1.149 ], "P_xyz": [ -0.503, 10.035, 0.276 ], "form": ".", "ssZp": 1.350, "Dp": 1.341, "splay_angle": 131.129, "splay_distance": 18.210, "splay_ratio": 0.910, "d22": null, "d64": null, "eta": 35.904, "theta": -52.309, "eta_prime": 33.225, "theta_prime": -88.167, "eta_base": 23.419, "theta_base": -111.661, "v0": -24.154, "v1": 37.519, "v2": -35.789, "v3": 22.786, "v4": 0.625, "amplitude": 38.022, "phase_angle": 160.266, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.010, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 175.537, 203.479, 168.539 ], "x_axis": [ -0.035, 0.069, -0.997 ], "y_axis": [ 0.260, 0.964, 0.057 ], "z_axis": [ 0.965, -0.257, -0.052 ], "quaternion": [ 0.685, 0.115, 0.716, -0.070 ] } }, { "index": 934, "index_chain": 934, "chain_name": "2", "nt_resnum": 1087, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1087", "linked_nts": [ "///2/1086", "///2/1088" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,splayed-apart", "alpha": -69.253, "beta": -179.864, "gamma": 179.812, "delta": 149.581, "epsilon": -88.123, "zeta": -26.518, "epsilon_zeta": -61.606, "bb_type": "--", "chi": -127.355, "glyco_bond": "anti", "C5prime_xyz": [ -1.769, 8.589, -0.761 ], "P_xyz": [ -0.099, 9.726, -2.439 ], "form": ".", "ssZp": 0.520, "Dp": 0.592, "splay_angle": 92.640, "splay_distance": 14.749, "splay_ratio": 0.723, "d22": null, "d64": null, "eta": -20.615, "theta": -57.162, "eta_prime": 9.724, "theta_prime": -65.720, "eta_base": 32.512, "theta_base": -52.588, "v0": -19.478, "v1": 35.024, "v2": -36.339, "v3": 26.027, "v4": -4.313, "amplitude": 37.177, "phase_angle": 167.809, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "2u", "suiteness": 0.761, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 187.995, 211.001, 179.485 ], "x_axis": [ -0.446, 0.026, 0.895 ], "y_axis": [ -0.853, -0.316, -0.416 ], "z_axis": [ 0.272, -0.949, 0.163 ], "quaternion": [ 0.317, 0.420, -0.492, 0.694 ] } }, { "index": 935, "index_chain": 935, "chain_name": "2", "nt_resnum": 1088, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1088", "linked_nts": [ "///2/1087", "///2/1089" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,cap-acceptor,splayed-apart", "alpha": -169.804, "beta": 127.402, "gamma": 163.540, "delta": 147.821, "epsilon": -156.354, "zeta": 91.289, "epsilon_zeta": 112.357, "bb_type": "--", "chi": -137.274, "glyco_bond": "anti", "C5prime_xyz": [ -1.741, 8.674, -0.267 ], "P_xyz": [ -0.620, 10.041, -2.207 ], "form": ".", "ssZp": 1.787, "Dp": 1.919, "splay_angle": 139.583, "splay_distance": 17.035, "splay_ratio": 0.939, "d22": null, "d64": null, "eta": 168.353, "theta": -15.612, "eta_prime": -159.104, "theta_prime": -6.621, "eta_base": -148.277, "theta_base": 157.172, "v0": -19.878, "v1": 34.709, "v2": -35.469, "v3": 24.907, "v4": -3.365, "amplitude": 36.485, "phase_angle": 166.447, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 177.014, 201.887, 175.761 ], "x_axis": [ -0.428, 0.777, 0.461 ], "y_axis": [ 0.490, 0.629, -0.604 ], "z_axis": [ -0.759, -0.033, -0.650 ], "quaternion": [ -0.371, 0.385, 0.823, -0.193 ] } }, { "index": 936, "index_chain": 936, "chain_name": "2", "nt_resnum": 1089, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1089", "linked_nts": [ "///2/1088", "///2/1090" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate,splayed-apart", "alpha": -79.477, "beta": -132.187, "gamma": 70.925, "delta": 80.707, "epsilon": -153.527, "zeta": -73.644, "epsilon_zeta": -79.883, "bb_type": "BI", "chi": -168.758, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.628, 1.032 ], "P_xyz": [ 1.128, 8.413, 1.972 ], "form": "A", "ssZp": 4.610, "Dp": 4.649, "splay_angle": 24.274, "splay_distance": 3.840, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": -120.220, "theta": -144.780, "eta_prime": -101.158, "theta_prime": -143.360, "eta_base": 114.583, "theta_base": -126.678, "v0": 4.418, "v1": -26.604, "v2": 37.481, "v3": -35.909, "v4": 19.849, "amplitude": 38.333, "phase_angle": 12.102, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 184.288, 195.778, 161.620 ], "x_axis": [ 0.002, -0.614, 0.790 ], "y_axis": [ -0.075, 0.787, 0.612 ], "z_axis": [ -0.997, -0.061, -0.045 ], "quaternion": [ 0.660, 0.255, -0.677, -0.204 ] } }, { "index": 937, "index_chain": 937, "chain_name": "2", "nt_resnum": 1090, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1090", "linked_nts": [ "///2/1089", "///2/1091" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.210, "beta": 173.118, "gamma": 56.534, "delta": 79.161, "epsilon": -151.269, "zeta": -70.429, "epsilon_zeta": -80.840, "bb_type": "BI", "chi": -167.605, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.722, 0.963 ], "P_xyz": [ 1.149, 9.187, 1.245 ], "form": "A", "ssZp": 4.587, "Dp": 4.639, "splay_angle": 23.815, "splay_distance": 3.815, "splay_ratio": 0.210, "d22": 4.348, "d64": 4.548, "eta": 172.199, "theta": -146.526, "eta_prime": -176.252, "theta_prime": -145.944, "eta_base": -144.802, "theta_base": -122.218, "v0": 1.811, "v1": -24.827, "v2": 37.116, "v3": -37.037, "v4": 22.190, "amplitude": 38.597, "phase_angle": 15.923, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.960, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 181.261, 193.799, 160.329 ], "x_axis": [ -0.008, -0.178, 0.984 ], "y_axis": [ -0.089, 0.980, 0.176 ], "z_axis": [ -0.996, -0.086, -0.024 ], "quaternion": [ 0.698, 0.094, -0.709, -0.032 ] } }, { "index": 938, "index_chain": 938, "chain_name": "2", "nt_resnum": 1091, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1091", "linked_nts": [ "///2/1090", "///2/1092" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -65.090, "beta": 178.088, "gamma": 52.310, "delta": 78.787, "epsilon": -145.301, "zeta": -68.167, "epsilon_zeta": -77.135, "bb_type": "BI", "chi": -165.202, "glyco_bond": "anti", "C5prime_xyz": [ -1.416, 8.764, 0.812 ], "P_xyz": [ 1.114, 9.299, 1.238 ], "form": "A", "ssZp": 4.554, "Dp": 4.670, "splay_angle": 19.718, "splay_distance": 3.185, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 169.222, "theta": -141.250, "eta_prime": -179.526, "theta_prime": -139.544, "eta_base": -142.123, "theta_base": -102.375, "v0": 1.224, "v1": -24.361, "v2": 36.960, "v3": -37.247, "v4": 22.678, "amplitude": 38.607, "phase_angle": 16.799, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.967, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 178.169, 191.612, 160.784 ], "x_axis": [ 0.072, 0.383, 0.921 ], "y_axis": [ -0.097, 0.922, -0.376 ], "z_axis": [ -0.993, -0.062, 0.104 ], "quaternion": [ 0.724, -0.108, -0.661, 0.166 ] } }, { "index": 939, "index_chain": 939, "chain_name": "2", "nt_resnum": 1092, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1092", "linked_nts": [ "///2/1091", "///2/1093" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -69.211, "beta": 174.453, "gamma": 52.111, "delta": 78.765, "epsilon": -156.466, "zeta": -78.833, "epsilon_zeta": -77.633, "bb_type": "BI", "chi": -159.817, "glyco_bond": "anti", "C5prime_xyz": [ -1.433, 8.791, 0.474 ], "P_xyz": [ 1.124, 9.351, 0.575 ], "form": ".", "ssZp": 4.449, "Dp": 4.620, "splay_angle": 28.978, "splay_distance": 4.709, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 159.120, "theta": -159.828, "eta_prime": 175.458, "theta_prime": -160.059, "eta_base": -130.356, "theta_base": -155.908, "v0": 2.115, "v1": -25.157, "v2": 37.394, "v3": -37.199, "v4": 22.107, "amplitude": 38.816, "phase_angle": 15.554, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.957, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 175.945, 191.202, 163.027 ], "x_axis": [ 0.165, 0.875, 0.455 ], "y_axis": [ -0.302, 0.484, -0.821 ], "z_axis": [ -0.939, -0.002, 0.344 ], "quaternion": [ 0.706, -0.290, -0.494, 0.417 ] } }, { "index": 940, "index_chain": 940, "chain_name": "2", "nt_resnum": 1093, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1093", "linked_nts": [ "///2/1092", "///2/1094" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -61.769, "beta": -178.008, "gamma": 46.149, "delta": 79.385, "epsilon": -152.370, "zeta": -75.623, "epsilon_zeta": -76.747, "bb_type": "BI", "chi": -170.841, "glyco_bond": "anti", "C5prime_xyz": [ -1.807, 8.704, 1.108 ], "P_xyz": [ 0.462, 9.441, 2.183 ], "form": "A", "ssZp": 4.478, "Dp": 4.522, "splay_angle": 23.719, "splay_distance": 3.712, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 170.910, "theta": -153.683, "eta_prime": 174.081, "theta_prime": -148.756, "eta_base": -174.769, "theta_base": -111.598, "v0": -2.272, "v1": -20.644, "v2": 34.335, "v3": -36.641, "v4": 24.552, "amplitude": 37.047, "phase_angle": 22.058, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.839, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 172.915, 188.943, 165.836 ], "x_axis": [ 0.515, 0.855, 0.059 ], "y_axis": [ -0.229, 0.204, -0.952 ], "z_axis": [ -0.826, 0.476, 0.300 ], "quaternion": [ 0.710, -0.503, -0.312, 0.381 ] } }, { "index": 941, "index_chain": 941, "chain_name": "2", "nt_resnum": 1094, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1094", "linked_nts": [ "///2/1093", "///2/1095" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -58.913, "beta": 169.757, "gamma": 54.706, "delta": 82.091, "epsilon": -153.511, "zeta": -84.912, "epsilon_zeta": -68.599, "bb_type": "BI", "chi": -162.287, "glyco_bond": "anti", "C5prime_xyz": [ -1.241, 8.762, 0.683 ], "P_xyz": [ 1.352, 9.033, 0.972 ], "form": ".", "ssZp": 4.396, "Dp": 4.543, "splay_angle": 27.235, "splay_distance": 4.257, "splay_ratio": 0.235, "d22": 4.981, "d64": 5.240, "eta": 172.474, "theta": -156.330, "eta_prime": -173.375, "theta_prime": -155.505, "eta_base": -125.690, "theta_base": -138.193, "v0": 1.505, "v1": -22.978, "v2": 34.535, "v3": -34.642, "v4": 20.906, "amplitude": 35.980, "phase_angle": 16.293, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.944, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 170.900, 191.030, 168.151 ], "x_axis": [ 0.202, 0.828, -0.524 ], "y_axis": [ -0.505, -0.370, -0.780 ], "z_axis": [ -0.839, 0.422, 0.343 ], "quaternion": [ 0.542, -0.554, -0.146, 0.615 ] } }, { "index": 942, "index_chain": 942, "chain_name": "2", "nt_resnum": 1095, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1095", "linked_nts": [ "///2/1094", "///2/1096" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -52.283, "beta": 162.605, "gamma": 54.850, "delta": 80.902, "epsilon": -136.389, "zeta": -45.503, "epsilon_zeta": -90.886, "bb_type": "BI", "chi": -161.451, "glyco_bond": "anti", "C5prime_xyz": [ -1.251, 8.729, 0.617 ], "P_xyz": [ 1.360, 8.947, 0.536 ], "form": ".", "ssZp": 4.428, "Dp": 4.702, "splay_angle": 62.380, "splay_distance": 10.574, "splay_ratio": 0.526, "d22": null, "d64": null, "eta": 177.562, "theta": -89.119, "eta_prime": -172.952, "theta_prime": -130.047, "eta_base": -146.288, "theta_base": -140.453, "v0": 3.308, "v1": -25.252, "v2": 36.460, "v3": -35.554, "v4": 20.323, "amplitude": 37.525, "phase_angle": 13.681, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.748, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 168.223, 192.676, 171.023 ], "x_axis": [ -0.118, 0.647, -0.753 ], "y_axis": [ -0.523, -0.685, -0.507 ], "z_axis": [ -0.844, 0.334, 0.419 ], "quaternion": [ 0.392, -0.536, -0.058, 0.745 ] } }, { "index": 943, "index_chain": 943, "chain_name": "2", "nt_resnum": 1096, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1096", "linked_nts": [ "///2/1095", "///2/1097" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 161.568, "beta": 85.230, "gamma": -170.411, "delta": 79.417, "epsilon": -139.861, "zeta": -75.527, "epsilon_zeta": -64.335, "bb_type": "BI", "chi": -170.747, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.594, 1.144 ], "P_xyz": [ -2.409, 10.849, 0.375 ], "form": "A", "ssZp": 4.676, "Dp": 4.742, "splay_angle": 25.584, "splay_distance": 4.077, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 112.518, "theta": 147.428, "eta_prime": 126.995, "theta_prime": 171.238, "eta_base": 122.960, "theta_base": -151.194, "v0": 4.586, "v1": -27.262, "v2": 38.410, "v3": -36.781, "v4": 20.301, "amplitude": 39.276, "phase_angle": 12.049, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.056, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 160.668, 196.635, 177.274 ], "x_axis": [ 0.749, 0.541, -0.383 ], "y_axis": [ 0.210, -0.741, -0.638 ], "z_axis": [ -0.629, 0.397, -0.669 ], "quaternion": [ -0.291, 0.889, 0.211, -0.285 ] } }, { "index": 944, "index_chain": 944, "chain_name": "2", "nt_resnum": 1097, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1097", "linked_nts": [ "///2/1096", "///2/1098" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -56.175, "beta": 158.506, "gamma": 64.193, "delta": 78.002, "epsilon": -147.166, "zeta": -73.206, "epsilon_zeta": -73.960, "bb_type": "BI", "chi": -174.254, "glyco_bond": "anti", "C5prime_xyz": [ -1.760, 8.656, 1.309 ], "P_xyz": [ 0.766, 9.319, 1.303 ], "form": "A", "ssZp": 4.643, "Dp": 4.644, "splay_angle": 24.391, "splay_distance": 3.911, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 172.462, "theta": -145.212, "eta_prime": -169.225, "theta_prime": -145.789, "eta_base": -125.314, "theta_base": -117.303, "v0": -0.255, "v1": -23.209, "v2": 36.535, "v3": -37.689, "v4": 23.925, "amplitude": 38.634, "phase_angle": 18.974, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.705, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 159.280, 200.045, 175.522 ], "x_axis": [ 0.748, 0.074, -0.659 ], "y_axis": [ -0.211, -0.916, -0.342 ], "z_axis": [ -0.629, 0.395, -0.670 ], "quaternion": [ -0.202, 0.913, -0.038, -0.353 ] } }, { "index": 945, "index_chain": 945, "chain_name": "2", "nt_resnum": 1098, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1098", "linked_nts": [ "///2/1097", "///2/1099" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.874, "beta": 173.551, "gamma": 53.466, "delta": 79.393, "epsilon": -126.349, "zeta": -77.072, "epsilon_zeta": -49.277, "bb_type": "--", "chi": -164.742, "glyco_bond": "anti", "C5prime_xyz": [ -1.489, 8.792, 0.789 ], "P_xyz": [ 1.044, 9.340, 1.162 ], "form": ".", "ssZp": 4.449, "Dp": 4.700, "splay_angle": 23.213, "splay_distance": 3.929, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 176.106, "theta": -149.393, "eta_prime": -172.960, "theta_prime": -152.525, "eta_base": -131.686, "theta_base": -153.187, "v0": -0.011, "v1": -22.907, "v2": 35.799, "v3": -36.783, "v4": 23.201, "amplitude": 37.773, "phase_angle": 18.604, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.946, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 158.569, 203.027, 173.093 ], "x_axis": [ 0.483, -0.492, -0.724 ], "y_axis": [ -0.632, -0.769, 0.101 ], "z_axis": [ -0.606, 0.408, -0.682 ], "quaternion": [ -0.090, 0.856, -0.328, -0.388 ] } }, { "index": 946, "index_chain": 946, "chain_name": "2", "nt_resnum": 1099, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1099", "linked_nts": [ "///2/1098", "///2/1100" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -96.035, "beta": 114.569, "gamma": 126.437, "delta": 81.026, "epsilon": -147.047, "zeta": -29.308, "epsilon_zeta": -117.739, "bb_type": "BI", "chi": -168.773, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.662, 1.037 ], "P_xyz": [ -0.350, 9.909, -1.031 ], "form": ".", "ssZp": 4.588, "Dp": 4.649, "splay_angle": 22.407, "splay_distance": 4.271, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 176.255, "theta": -123.314, "eta_prime": -173.266, "theta_prime": -144.314, "eta_base": -161.714, "theta_base": -124.383, "v0": 2.751, "v1": -24.703, "v2": 36.054, "v3": -35.465, "v4": 20.655, "amplitude": 37.238, "phase_angle": 14.485, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 157.604, 206.520, 171.576 ], "x_axis": [ 0.270, -0.464, -0.844 ], "y_axis": [ -0.829, -0.557, 0.041 ], "z_axis": [ -0.489, 0.689, -0.535 ], "quaternion": [ -0.211, 0.769, -0.421, -0.434 ] } }, { "index": 947, "index_chain": 947, "chain_name": "2", "nt_resnum": 1100, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1100", "linked_nts": [ "///2/1099", "///2/1101" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 179.620, "beta": 136.968, "gamma": 160.608, "delta": 81.218, "epsilon": -142.417, "zeta": -66.584, "epsilon_zeta": -75.833, "bb_type": "BI", "chi": -172.528, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.520, 1.251 ], "P_xyz": [ -0.827, 10.720, -0.044 ], "form": "A", "ssZp": 4.666, "Dp": 4.694, "splay_angle": 23.146, "splay_distance": 3.634, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 147.145, "theta": -176.635, "eta_prime": 166.327, "theta_prime": -165.091, "eta_base": -150.595, "theta_base": -114.901, "v0": 3.640, "v1": -25.526, "v2": 36.478, "v3": -35.398, "v4": 20.043, "amplitude": 37.464, "phase_angle": 13.173, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.181, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 158.793, 208.273, 167.868 ], "x_axis": [ -0.038, -0.875, -0.482 ], "y_axis": [ -0.926, -0.151, 0.347 ], "z_axis": [ -0.376, 0.459, -0.805 ], "quaternion": [ -0.041, 0.692, -0.650, -0.310 ] } }, { "index": 948, "index_chain": 948, "chain_name": "2", "nt_resnum": 1101, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1101", "linked_nts": [ "///2/1100", "///2/1102" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -67.125, "beta": 169.381, "gamma": 59.031, "delta": 80.555, "epsilon": -137.836, "zeta": -80.286, "epsilon_zeta": -57.550, "bb_type": "BI", "chi": -160.842, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.720, 0.568 ], "P_xyz": [ 1.162, 9.155, 0.488 ], "form": "A", "ssZp": 4.427, "Dp": 4.699, "splay_angle": 20.078, "splay_distance": 3.198, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 166.812, "theta": -143.600, "eta_prime": -173.921, "theta_prime": -144.495, "eta_base": -112.379, "theta_base": -129.140, "v0": 2.392, "v1": -24.658, "v2": 36.323, "v3": -35.937, "v4": 21.129, "amplitude": 37.610, "phase_angle": 15.030, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 158.349, 207.584, 164.328 ], "x_axis": [ -0.689, -0.711, -0.143 ], "y_axis": [ -0.684, 0.572, 0.452 ], "z_axis": [ -0.240, 0.409, -0.880 ], "quaternion": [ -0.027, -0.394, 0.886, 0.243 ] } }, { "index": 949, "index_chain": 949, "chain_name": "2", "nt_resnum": 1102, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1102", "linked_nts": [ "///2/1101", "///2/1103" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -83.410, "beta": -178.206, "gamma": 50.556, "delta": 82.027, "epsilon": -157.199, "zeta": -72.073, "epsilon_zeta": -85.126, "bb_type": "BI", "chi": -161.836, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.726, 0.651 ], "P_xyz": [ 1.232, 9.125, 1.193 ], "form": "A", "ssZp": 4.436, "Dp": 4.565, "splay_angle": 22.843, "splay_distance": 3.731, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 150.845, "theta": -151.472, "eta_prime": 160.597, "theta_prime": -150.109, "eta_base": -169.439, "theta_base": -139.805, "v0": 3.261, "v1": -24.830, "v2": 35.762, "v3": -34.857, "v4": 19.940, "amplitude": 36.800, "phase_angle": 13.638, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.665, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 158.117, 207.675, 161.140 ], "x_axis": [ -0.618, -0.419, 0.665 ], "y_axis": [ -0.264, 0.908, 0.326 ], "z_axis": [ -0.741, 0.026, -0.671 ], "quaternion": [ -0.393, -0.191, 0.894, 0.098 ] } }, { "index": 950, "index_chain": 950, "chain_name": "2", "nt_resnum": 1103, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1103", "linked_nts": [ "///2/1102", "///2/1104" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -64.776, "beta": -177.402, "gamma": 51.643, "delta": 79.507, "epsilon": -142.889, "zeta": -80.632, "epsilon_zeta": -62.257, "bb_type": "BI", "chi": -147.647, "glyco_bond": "anti", "C5prime_xyz": [ -1.440, 8.874, -0.211 ], "P_xyz": [ 1.093, 9.549, -0.112 ], "form": "A", "ssZp": 3.962, "Dp": 4.615, "splay_angle": 24.415, "splay_distance": 3.950, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 174.610, "theta": -150.848, "eta_prime": -177.998, "theta_prime": -148.499, "eta_base": -160.240, "theta_base": -121.291, "v0": -0.244, "v1": -22.497, "v2": 35.414, "v3": -36.534, "v4": 23.188, "amplitude": 37.448, "phase_angle": 18.972, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.920, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 156.638, 205.984, 158.160 ], "x_axis": [ -0.648, -0.025, 0.762 ], "y_axis": [ -0.119, 0.990, -0.069 ], "z_axis": [ -0.753, -0.135, -0.644 ], "quaternion": [ -0.418, -0.040, 0.906, -0.056 ] } }, { "index": 951, "index_chain": 951, "chain_name": "2", "nt_resnum": 1104, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1104", "linked_nts": [ "///2/1103", "///2/1105" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -62.676, "beta": 164.664, "gamma": 50.383, "delta": 79.778, "epsilon": -152.230, "zeta": -73.630, "epsilon_zeta": -78.600, "bb_type": "BI", "chi": -165.306, "glyco_bond": "anti", "C5prime_xyz": [ -1.463, 8.716, 0.826 ], "P_xyz": [ 1.116, 9.141, 0.993 ], "form": "A", "ssZp": 4.546, "Dp": 4.635, "splay_angle": 21.829, "splay_distance": 3.503, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 159.489, "theta": -148.388, "eta_prime": 172.366, "theta_prime": -149.006, "eta_base": -147.605, "theta_base": -128.475, "v0": 2.602, "v1": -25.251, "v2": 37.089, "v3": -36.594, "v4": 21.427, "amplitude": 38.362, "phase_angle": 14.804, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.895, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 153.110, 205.074, 156.634 ], "x_axis": [ -0.226, 0.490, 0.842 ], "y_axis": [ 0.247, 0.865, -0.437 ], "z_axis": [ -0.942, 0.110, -0.316 ], "quaternion": [ 0.575, -0.237, -0.776, 0.105 ] } }, { "index": 952, "index_chain": 952, "chain_name": "2", "nt_resnum": 1105, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1105", "linked_nts": [ "///2/1104", "///2/1106" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.841, "beta": 169.772, "gamma": 57.172, "delta": 79.711, "epsilon": -149.843, "zeta": -71.417, "epsilon_zeta": -78.425, "bb_type": "BI", "chi": -167.780, "glyco_bond": "anti", "C5prime_xyz": [ -1.595, 8.736, 0.958 ], "P_xyz": [ 0.952, 9.292, 1.217 ], "form": "A", "ssZp": 4.550, "Dp": 4.612, "splay_angle": 25.724, "splay_distance": 4.004, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 168.882, "theta": -145.165, "eta_prime": -178.569, "theta_prime": -143.759, "eta_base": -142.552, "theta_base": -108.783, "v0": 0.714, "v1": -23.513, "v2": 36.080, "v3": -36.653, "v4": 22.651, "amplitude": 37.838, "phase_angle": 17.530, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.959, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 149.756, 204.122, 156.967 ], "x_axis": [ 0.023, 0.834, 0.551 ], "y_axis": [ 0.276, 0.525, -0.805 ], "z_axis": [ -0.961, 0.171, -0.218 ], "quaternion": [ 0.577, -0.423, -0.656, 0.242 ] } }, { "index": 953, "index_chain": 953, "chain_name": "2", "nt_resnum": 1106, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1106", "linked_nts": [ "///2/1105", "///2/1107" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -65.018, "beta": 174.766, "gamma": 55.183, "delta": 80.511, "epsilon": -149.112, "zeta": -80.116, "epsilon_zeta": -68.995, "bb_type": "BI", "chi": -163.492, "glyco_bond": "anti", "C5prime_xyz": [ -1.210, 8.703, 0.737 ], "P_xyz": [ 1.390, 8.996, 0.930 ], "form": ".", "ssZp": 4.533, "Dp": 4.665, "splay_angle": 25.885, "splay_distance": 4.207, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 169.197, "theta": -153.321, "eta_prime": -176.499, "theta_prime": -153.254, "eta_base": -126.124, "theta_base": -150.501, "v0": 3.790, "v1": -25.879, "v2": 36.940, "v3": -35.740, "v4": 20.140, "amplitude": 37.909, "phase_angle": 12.983, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.986, "filter_rmsd": 0.065, "frame": { "rmsd": 0.002, "origin": [ 146.092, 205.476, 157.848 ], "x_axis": [ 0.230, 0.968, -0.096 ], "y_axis": [ 0.183, -0.140, -0.973 ], "z_axis": [ -0.956, 0.207, -0.210 ], "quaternion": [ -0.469, 0.629, 0.458, -0.418 ] } }, { "index": 954, "index_chain": 954, "chain_name": "2", "nt_resnum": 1107, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1107", "linked_nts": [ "///2/1106", "///2/1108" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.965, "beta": 176.826, "gamma": 53.008, "delta": 79.314, "epsilon": -152.668, "zeta": -71.174, "epsilon_zeta": -81.494, "bb_type": "BI", "chi": -164.535, "glyco_bond": "anti", "C5prime_xyz": [ -1.690, 8.801, 0.755 ], "P_xyz": [ 0.785, 9.526, 1.209 ], "form": "A", "ssZp": 4.486, "Dp": 4.578, "splay_angle": 25.379, "splay_distance": 3.961, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 167.514, "theta": -148.832, "eta_prime": 174.208, "theta_prime": -146.395, "eta_base": -172.878, "theta_base": -108.525, "v0": -0.551, "v1": -22.451, "v2": 35.565, "v3": -36.871, "v4": 23.583, "amplitude": 37.707, "phase_angle": 19.404, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.932, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 142.252, 205.575, 159.564 ], "x_axis": [ 0.555, 0.773, -0.306 ], "y_axis": [ 0.077, -0.414, -0.907 ], "z_axis": [ -0.828, 0.480, -0.290 ], "quaternion": [ -0.461, 0.752, 0.283, -0.377 ] } }, { "index": 955, "index_chain": 955, "chain_name": "2", "nt_resnum": 1108, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1108", "linked_nts": [ "///2/1107", "///2/1109" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": -66.000, "beta": 168.980, "gamma": 59.057, "delta": 80.338, "epsilon": -133.970, "zeta": -112.881, "epsilon_zeta": -21.090, "bb_type": "--", "chi": -167.073, "glyco_bond": "anti", "C5prime_xyz": [ -1.321, 8.667, 0.933 ], "P_xyz": [ 1.283, 8.998, 0.965 ], "form": ".", "ssZp": 4.592, "Dp": 4.749, "splay_angle": 47.969, "splay_distance": 8.542, "splay_ratio": 0.423, "d22": null, "d64": null, "eta": 171.026, "theta": -154.532, "eta_prime": -175.120, "theta_prime": -172.289, "eta_base": -123.677, "theta_base": 163.788, "v0": 4.001, "v1": -26.215, "v2": 37.262, "v3": -35.965, "v4": 20.171, "amplitude": 38.202, "phase_angle": 12.736, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.927, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 140.092, 208.813, 158.832 ], "x_axis": [ 0.476, 0.332, -0.814 ], "y_axis": [ -0.292, -0.814, -0.502 ], "z_axis": [ -0.830, 0.477, -0.291 ], "quaternion": [ -0.305, 0.803, 0.013, -0.512 ] } }, { "index": 956, "index_chain": 956, "chain_name": "2", "nt_resnum": 1109, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1109", "linked_nts": [ "///2/1108", "///2/1110" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge", "alpha": 61.255, "beta": -152.916, "gamma": -106.246, "delta": 80.391, "epsilon": -135.673, "zeta": -51.206, "epsilon_zeta": -84.468, "bb_type": "BI", "chi": -164.177, "glyco_bond": "anti", "C5prime_xyz": [ -1.290, 8.728, 0.767 ], "P_xyz": [ -1.118, 11.324, 0.426 ], "form": ".", "ssZp": 4.516, "Dp": 4.721, "splay_angle": 41.605, "splay_distance": 6.395, "splay_ratio": 0.355, "d22": null, "d64": null, "eta": 160.988, "theta": -165.891, "eta_prime": 148.377, "theta_prime": -146.151, "eta_base": 126.968, "theta_base": -89.559, "v0": 2.777, "v1": -25.147, "v2": 36.692, "v3": -36.060, "v4": 20.999, "amplitude": 37.893, "phase_angle": 14.467, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 134.962, 210.651, 165.410 ], "x_axis": [ 0.847, 0.410, -0.338 ], "y_axis": [ -0.073, -0.541, -0.838 ], "z_axis": [ -0.526, 0.735, -0.428 ], "quaternion": [ -0.469, 0.839, 0.100, -0.257 ] } }, { "index": 957, "index_chain": 957, "chain_name": "2", "nt_resnum": 1110, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1110", "linked_nts": [ "///2/1109", "///2/1111" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -72.313, "beta": 163.245, "gamma": 69.228, "delta": 80.991, "epsilon": -155.171, "zeta": -90.926, "epsilon_zeta": -64.245, "bb_type": "BI", "chi": -178.524, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.469, 1.582 ], "P_xyz": [ 1.155, 8.843, 1.594 ], "form": "A", "ssZp": 4.623, "Dp": 4.621, "splay_angle": 23.378, "splay_distance": 3.758, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 160.352, "theta": -136.558, "eta_prime": -163.821, "theta_prime": -144.143, "eta_base": -86.939, "theta_base": -131.794, "v0": 3.697, "v1": -25.684, "v2": 36.712, "v3": -35.571, "v4": 20.112, "amplitude": 37.693, "phase_angle": 13.104, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.446, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 137.041, 214.022, 160.389 ], "x_axis": [ 0.368, -0.405, -0.837 ], "y_axis": [ -0.770, -0.637, -0.030 ], "z_axis": [ -0.521, 0.656, -0.546 ], "quaternion": [ -0.215, 0.799, -0.368, -0.425 ] } }, { "index": 958, "index_chain": 958, "chain_name": "2", "nt_resnum": 1111, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1111", "linked_nts": [ "///2/1110", "///2/1112" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -176.616, "beta": -154.975, "gamma": 146.904, "delta": 82.610, "epsilon": -134.702, "zeta": -69.257, "epsilon_zeta": -65.445, "bb_type": "BI", "chi": -178.629, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.395, 1.638 ], "P_xyz": [ 0.943, 9.350, 0.841 ], "form": "A", "ssZp": 4.656, "Dp": 4.683, "splay_angle": 23.131, "splay_distance": 3.621, "splay_ratio": 0.203, "d22": 4.055, "d64": 3.768, "eta": 160.177, "theta": -138.735, "eta_prime": 173.379, "theta_prime": -140.487, "eta_base": -156.308, "theta_base": -100.070, "v0": 3.681, "v1": -24.644, "v2": 35.067, "v3": -33.939, "v4": 19.072, "amplitude": 35.972, "phase_angle": 12.884, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 137.586, 217.362, 158.756 ], "x_axis": [ -0.028, -0.746, -0.665 ], "y_axis": [ -0.906, -0.263, 0.333 ], "z_axis": [ -0.423, 0.612, -0.668 ], "quaternion": [ -0.101, 0.690, -0.599, -0.395 ] } }, { "index": 959, "index_chain": 959, "chain_name": "2", "nt_resnum": 1112, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1112", "linked_nts": [ "///2/1111", "///2/1113" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -67.979, "beta": 174.095, "gamma": 52.361, "delta": 82.702, "epsilon": -135.863, "zeta": -92.410, "epsilon_zeta": -43.454, "bb_type": "BI", "chi": -161.972, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 8.694, 0.657 ], "P_xyz": [ 1.205, 9.069, 1.017 ], "form": ".", "ssZp": 4.411, "Dp": 4.664, "splay_angle": 22.221, "splay_distance": 3.535, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 163.277, "theta": -153.680, "eta_prime": -178.362, "theta_prime": -151.248, "eta_base": -119.496, "theta_base": -149.293, "v0": 2.376, "v1": -23.622, "v2": 34.685, "v3": -34.294, "v4": 20.137, "amplitude": 35.894, "phase_angle": 14.915, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.884, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 136.976, 217.843, 155.219 ], "x_axis": [ -0.638, -0.753, -0.162 ], "y_axis": [ -0.645, 0.408, 0.646 ], "z_axis": [ -0.420, 0.516, -0.746 ], "quaternion": [ -0.077, -0.418, 0.836, 0.348 ] } }, { "index": 960, "index_chain": 960, "chain_name": "2", "nt_resnum": 1113, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1113", "linked_nts": [ "///2/1112", "///2/1114" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,junction-loop,kissing-loop,phosphate,splayed-apart", "alpha": -70.913, "beta": 170.536, "gamma": 51.131, "delta": 83.940, "epsilon": -125.433, "zeta": 53.618, "epsilon_zeta": 180.949, "bb_type": "--", "chi": -152.969, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.756, 0.136 ], "P_xyz": [ 1.235, 9.153, 0.267 ], "form": ".", "ssZp": 4.005, "Dp": 4.631, "splay_angle": 122.471, "splay_distance": 18.130, "splay_ratio": 0.877, "d22": null, "d64": null, "eta": 166.494, "theta": -0.835, "eta_prime": 170.109, "theta_prime": -6.855, "eta_base": 177.362, "theta_base": -29.854, "v0": 1.278, "v1": -22.035, "v2": 33.206, "v3": -33.407, "v4": 20.290, "amplitude": 34.642, "phase_angle": 16.558, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.640, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 137.324, 219.525, 152.130 ], "x_axis": [ -0.610, -0.682, 0.404 ], "y_axis": [ -0.461, 0.720, 0.519 ], "z_axis": [ -0.644, 0.130, -0.754 ], "quaternion": [ -0.298, -0.325, 0.878, 0.185 ] } }, { "index": 961, "index_chain": 961, "chain_name": "2", "nt_resnum": 1114, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1114", "linked_nts": [ "///2/1113", "///2/1115" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,junction-loop,kissing-loop,phosphate,splayed-apart", "alpha": -171.749, "beta": 160.991, "gamma": -163.763, "delta": 80.951, "epsilon": -138.109, "zeta": -100.282, "epsilon_zeta": -37.827, "bb_type": "BI", "chi": -158.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.728, 0.464 ], "P_xyz": [ -1.035, 11.089, -0.606 ], "form": ".", "ssZp": 4.361, "Dp": 4.689, "splay_angle": 22.252, "splay_distance": 3.541, "splay_ratio": 0.193, "d22": 4.586, "d64": 4.306, "eta": -134.251, "theta": 152.876, "eta_prime": -104.351, "theta_prime": 174.591, "eta_base": -55.997, "theta_base": 174.558, "v0": 2.300, "v1": -24.443, "v2": 36.102, "v3": -35.772, "v4": 21.119, "amplitude": 37.407, "phase_angle": 15.181, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 123.614, 229.324, 158.818 ], "x_axis": [ -0.283, 0.854, -0.437 ], "y_axis": [ 0.746, -0.091, -0.660 ], "z_axis": [ -0.603, -0.512, -0.611 ], "quaternion": [ -0.062, 0.596, 0.671, -0.437 ] } }, { "index": 962, "index_chain": 962, "chain_name": "2", "nt_resnum": 1115, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1115", "linked_nts": [ "///2/1114", "///2/1116" ], "nt_type": "RNA", "dbn": "A", "summary": "pseudoknotted,anti,~C2'-endo,isolated-canonical,non-pair-contact,hairpin-loop,junction-loop,kissing-loop,phosphate,splayed-apart", "alpha": -48.604, "beta": 163.496, "gamma": 57.867, "delta": 145.170, "epsilon": -85.171, "zeta": -58.996, "epsilon_zeta": -26.175, "bb_type": "--", "chi": -125.504, "glyco_bond": "anti", "C5prime_xyz": [ -1.966, 8.615, -0.962 ], "P_xyz": [ 0.531, 9.230, -0.460 ], "form": ".", "ssZp": 0.538, "Dp": 0.601, "splay_angle": 104.083, "splay_distance": 15.837, "splay_ratio": 0.788, "d22": 7.780, "d64": 9.184, "eta": -153.935, "theta": -25.856, "eta_prime": -138.760, "theta_prime": -57.112, "eta_base": -154.107, "theta_base": -32.540, "v0": -21.979, "v1": 35.538, "v2": -34.774, "v3": 22.994, "v4": -0.839, "amplitude": 36.456, "phase_angle": 162.530, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.420, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 121.095, 226.841, 158.650 ], "x_axis": [ 0.236, 0.940, -0.247 ], "y_axis": [ 0.623, -0.341, -0.703 ], "z_axis": [ -0.745, 0.012, -0.666 ], "quaternion": [ -0.239, 0.749, 0.522, -0.331 ] } }, { "index": 963, "index_chain": 963, "chain_name": "2", "nt_resnum": 1116, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1116", "linked_nts": [ "///2/1115", "///2/1117" ], "nt_type": "RNA", "dbn": "{", "summary": "pseudoknotted,anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart", "alpha": -92.414, "beta": -162.655, "gamma": 37.974, "delta": 78.774, "epsilon": -158.284, "zeta": -71.959, "epsilon_zeta": -86.325, "bb_type": "BI", "chi": -166.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.721, 8.830, 0.829 ], "P_xyz": [ 0.321, 9.730, 2.196 ], "form": "A", "ssZp": 4.450, "Dp": 4.503, "splay_angle": 22.130, "splay_distance": 3.582, "splay_ratio": 0.195, "d22": 4.488, "d64": 4.573, "eta": 115.413, "theta": -160.037, "eta_prime": 160.433, "theta_prime": -153.969, "eta_base": -174.228, "theta_base": -125.625, "v0": -2.183, "v1": -21.117, "v2": 34.960, "v3": -37.210, "v4": 24.818, "amplitude": 37.660, "phase_angle": 21.826, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.391, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 126.974, 221.474, 144.959 ], "x_axis": [ 0.434, 0.793, 0.427 ], "y_axis": [ -0.462, -0.211, 0.862 ], "z_axis": [ 0.774, -0.571, 0.275 ], "quaternion": [ 0.612, 0.585, 0.142, 0.513 ] } }, { "index": 964, "index_chain": 964, "chain_name": "2", "nt_resnum": 1117, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1117", "linked_nts": [ "///2/1116", "///2/1118" ], "nt_type": "RNA", "dbn": "{", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,kissing-loop", "alpha": -65.276, "beta": 176.474, "gamma": 55.308, "delta": 81.384, "epsilon": -117.226, "zeta": -112.440, "epsilon_zeta": -4.786, "bb_type": "--", "chi": -161.417, "glyco_bond": "anti", "C5prime_xyz": [ -1.459, 8.842, 0.581 ], "P_xyz": [ 1.075, 9.395, 0.993 ], "form": ".", "ssZp": 4.194, "Dp": 4.616, "splay_angle": 20.033, "splay_distance": 3.471, "splay_ratio": 0.177, "d22": 4.159, "d64": 4.150, "eta": -179.996, "theta": -123.856, "eta_prime": -172.883, "theta_prime": -135.681, "eta_base": -142.845, "theta_base": -129.413, "v0": -1.375, "v1": -20.587, "v2": 33.431, "v3": -35.173, "v4": 23.061, "amplitude": 35.755, "phase_angle": 20.770, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.916, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 130.326, 220.363, 144.365 ], "x_axis": [ 0.097, 0.601, 0.793 ], "y_axis": [ -0.581, -0.613, 0.535 ], "z_axis": [ 0.808, -0.513, 0.290 ], "quaternion": [ 0.440, 0.596, 0.008, 0.672 ] } }, { "index": 965, "index_chain": 965, "chain_name": "2", "nt_resnum": 1118, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1118", "linked_nts": [ "///2/1117", "///2/1119" ], "nt_type": "RNA", "dbn": "{", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop", "alpha": 114.035, "beta": -139.733, "gamma": -170.113, "delta": 83.156, "epsilon": -136.789, "zeta": -86.268, "epsilon_zeta": -50.521, "bb_type": "BI", "chi": -170.053, "glyco_bond": "anti", "C5prime_xyz": [ -1.199, 8.627, 1.148 ], "P_xyz": [ 0.299, 10.122, -0.391 ], "form": "A", "ssZp": 4.533, "Dp": 4.637, "splay_angle": 25.159, "splay_distance": 3.947, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 145.353, "theta": -172.004, "eta_prime": 160.062, "theta_prime": -166.082, "eta_base": -177.346, "theta_base": -139.226, "v0": 2.551, "v1": -23.457, "v2": 34.325, "v3": -33.805, "v4": 19.730, "amplitude": 35.471, "phase_angle": 14.605, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 133.753, 219.866, 144.618 ], "x_axis": [ -0.502, 0.516, 0.694 ], "y_axis": [ -0.449, -0.841, 0.301 ], "z_axis": [ 0.739, -0.161, 0.654 ], "quaternion": [ 0.279, 0.414, 0.040, 0.866 ] } }, { "index": 966, "index_chain": 966, "chain_name": "2", "nt_resnum": 1119, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1119", "linked_nts": [ "///2/1118", "///2/1120" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,junction-loop,kissing-loop", "alpha": -46.320, "beta": 167.639, "gamma": 43.112, "delta": 83.042, "epsilon": -161.989, "zeta": -78.302, "epsilon_zeta": -83.687, "bb_type": "BI", "chi": -151.679, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.709, 0.072 ], "P_xyz": [ 1.336, 9.015, 0.288 ], "form": ".", "ssZp": 4.169, "Dp": 4.495, "splay_angle": 30.601, "splay_distance": 4.895, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 170.919, "theta": -119.268, "eta_prime": -174.563, "theta_prime": -121.221, "eta_base": -139.251, "theta_base": -83.501, "v0": 2.918, "v1": -23.742, "v2": 34.388, "v3": -33.697, "v4": 19.426, "amplitude": 35.447, "phase_angle": 14.038, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.539, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 136.832, 220.540, 146.993 ], "x_axis": [ -0.694, -0.011, 0.720 ], "y_axis": [ -0.063, -0.995, -0.075 ], "z_axis": [ 0.717, -0.098, 0.690 ], "quaternion": [ 0.014, 0.391, -0.047, 0.919 ] } }, { "index": 967, "index_chain": 967, "chain_name": "2", "nt_resnum": 1120, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1120", "linked_nts": [ "///2/1119", "///2/1121" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,junction-loop,kissing-loop", "alpha": 164.047, "beta": -136.134, "gamma": 160.111, "delta": 81.287, "epsilon": -98.015, "zeta": -104.723, "epsilon_zeta": 6.708, "bb_type": "--", "chi": -162.566, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.693, 0.693 ], "P_xyz": [ 0.530, 9.348, -1.007 ], "form": ".", "ssZp": 4.123, "Dp": 4.706, "splay_angle": 27.356, "splay_distance": 4.987, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": 174.287, "theta": -130.723, "eta_prime": -163.774, "theta_prime": -150.059, "eta_base": -108.914, "theta_base": -153.080, "v0": 2.487, "v1": -24.219, "v2": 35.544, "v3": -35.119, "v4": 20.605, "amplitude": 36.773, "phase_angle": 14.856, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.300, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 136.992, 219.644, 151.803 ], "x_axis": [ -0.509, -0.708, 0.489 ], "y_axis": [ 0.562, -0.704, -0.434 ], "z_axis": [ 0.651, 0.054, 0.757 ], "quaternion": [ -0.369, 0.331, -0.110, 0.862 ] } }, { "index": 968, "index_chain": 968, "chain_name": "2", "nt_resnum": 1121, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1121", "linked_nts": [ "///2/1120", "///2/1122" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 66.067, "beta": -127.247, "gamma": -129.655, "delta": 80.891, "epsilon": -119.333, "zeta": -68.785, "epsilon_zeta": -50.548, "bb_type": "--", "chi": 177.422, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.295, 1.821 ], "P_xyz": [ -0.876, 10.760, 1.071 ], "form": ".", "ssZp": 4.810, "Dp": 4.810, "splay_angle": 30.972, "splay_distance": 4.821, "splay_ratio": 0.270, "d22": null, "d64": null, "eta": 151.885, "theta": -165.670, "eta_prime": 157.309, "theta_prime": -152.586, "eta_base": 171.907, "theta_base": -98.680, "v0": 5.984, "v1": -27.759, "v2": 37.864, "v3": -35.443, "v4": 18.577, "amplitude": 38.433, "phase_angle": 9.870, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 138.503, 221.534, 156.164 ], "x_axis": [ -0.713, -0.700, -0.036 ], "y_axis": [ 0.555, -0.533, -0.639 ], "z_axis": [ 0.428, -0.475, 0.769 ], "quaternion": [ -0.361, 0.113, -0.321, 0.868 ] } }, { "index": 969, "index_chain": 969, "chain_name": "2", "nt_resnum": 1122, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1122", "linked_nts": [ "///2/1121", "///2/1123" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.698, "beta": 174.333, "gamma": 44.916, "delta": 79.331, "epsilon": -142.845, "zeta": -64.461, "epsilon_zeta": -78.384, "bb_type": "BI", "chi": -171.020, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.600, 1.159 ], "P_xyz": [ 0.952, 9.065, 1.903 ], "form": ".", "ssZp": 4.633, "Dp": 4.683, "splay_angle": 32.373, "splay_distance": 5.088, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 156.941, "theta": -135.932, "eta_prime": 179.098, "theta_prime": -132.093, "eta_base": -113.562, "theta_base": -97.709, "v0": 2.283, "v1": -25.018, "v2": 36.970, "v3": -36.659, "v4": 21.670, "amplitude": 38.320, "phase_angle": 15.254, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.505, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 137.332, 217.498, 158.527 ], "x_axis": [ -0.070, -0.664, -0.745 ], "y_axis": [ 0.903, 0.275, -0.329 ], "z_axis": [ 0.423, -0.696, 0.580 ], "quaternion": [ 0.668, 0.137, 0.437, -0.586 ] } }, { "index": 970, "index_chain": 970, "chain_name": "2", "nt_resnum": 1123, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1123", "linked_nts": [ "///2/1122", "///2/1124" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -64.290, "beta": -170.275, "gamma": 44.115, "delta": 79.606, "epsilon": -146.228, "zeta": -78.448, "epsilon_zeta": -67.780, "bb_type": "BI", "chi": -171.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.665, 1.200 ], "P_xyz": [ 0.934, 9.068, 2.382 ], "form": "A", "ssZp": 4.607, "Dp": 4.641, "splay_angle": 23.810, "splay_distance": 3.742, "splay_ratio": 0.208, "d22": 4.314, "d64": 4.529, "eta": 168.776, "theta": -151.506, "eta_prime": -177.779, "theta_prime": -145.399, "eta_base": -129.878, "theta_base": -115.557, "v0": 1.244, "v1": -23.876, "v2": 36.208, "v3": -36.489, "v4": 22.209, "amplitude": 37.816, "phase_angle": 16.769, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.763, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 138.076, 212.567, 159.535 ], "x_axis": [ 0.366, -0.012, -0.930 ], "y_axis": [ 0.585, 0.780, 0.220 ], "z_axis": [ 0.723, -0.625, 0.293 ], "quaternion": [ 0.781, 0.271, 0.529, -0.191 ] } }, { "index": 971, "index_chain": 971, "chain_name": "2", "nt_resnum": 1124, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1124", "linked_nts": [ "///2/1123", "///2/1125" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-canonical,helix,stem-end,coaxial-stack,multiplet,bulge,phosphate", "alpha": -52.882, "beta": 165.866, "gamma": 52.539, "delta": 81.795, "epsilon": -151.861, "zeta": -74.825, "epsilon_zeta": -77.035, "bb_type": "BI", "chi": -168.282, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.721, 1.007 ], "P_xyz": [ 1.151, 9.060, 1.441 ], "form": "A", "ssZp": 4.486, "Dp": 4.545, "splay_angle": 25.628, "splay_distance": 4.069, "splay_ratio": 0.223, "d22": 4.885, "d64": 4.949, "eta": 172.667, "theta": -147.955, "eta_prime": -172.922, "theta_prime": -146.887, "eta_base": -132.737, "theta_base": -126.774, "v0": 0.324, "v1": -22.010, "v2": 34.055, "v3": -34.835, "v4": 21.781, "amplitude": 35.831, "phase_angle": 18.112, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.837, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 139.747, 209.219, 159.548 ], "x_axis": [ 0.594, 0.433, -0.678 ], "y_axis": [ 0.290, 0.671, 0.682 ], "z_axis": [ 0.750, -0.602, 0.273 ], "quaternion": [ 0.797, 0.403, 0.448, 0.045 ] } }, { "index": 972, "index_chain": 972, "chain_name": "2", "nt_resnum": 1125, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1125", "linked_nts": [ "///2/1124", "///2/1126" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,non-stack,canonical,helix,stem,coaxial-stack,phosphate", "alpha": -63.657, "beta": -179.666, "gamma": 50.589, "delta": 81.131, "epsilon": -140.395, "zeta": -30.976, "epsilon_zeta": -109.419, "bb_type": "--", "chi": -157.154, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.788, 0.358 ], "P_xyz": [ 1.261, 9.236, 0.697 ], "form": ".", "ssZp": 4.313, "Dp": 4.667, "splay_angle": 24.700, "splay_distance": 4.538, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 173.520, "theta": -112.205, "eta_prime": -177.286, "theta_prime": -129.201, "eta_base": -147.182, "theta_base": -127.291, "v0": 1.970, "v1": -23.958, "v2": 35.630, "v3": -35.471, "v4": 21.124, "amplitude": 36.997, "phase_angle": 15.624, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 142.054, 205.879, 159.278 ], "x_axis": [ 0.636, 0.730, -0.249 ], "y_axis": [ -0.036, 0.351, 0.936 ], "z_axis": [ 0.771, -0.586, 0.250 ], "quaternion": [ 0.748, 0.509, 0.341, 0.256 ] } }, { "index": 973, "index_chain": 973, "chain_name": "2", "nt_resnum": 1126, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1126", "linked_nts": [ "///2/1125", "///2/1127" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -152.476, "beta": 111.998, "gamma": 158.691, "delta": 81.988, "epsilon": -142.708, "zeta": -66.737, "epsilon_zeta": -75.971, "bb_type": "BI", "chi": -178.396, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.468, 1.592 ], "P_xyz": [ -1.168, 10.688, 0.232 ], "form": "A", "ssZp": 4.639, "Dp": 4.657, "splay_angle": 23.421, "splay_distance": 3.739, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 162.191, "theta": 174.680, "eta_prime": 170.750, "theta_prime": -170.590, "eta_base": -170.511, "theta_base": -126.773, "v0": 3.102, "v1": -24.644, "v2": 35.591, "v3": -34.809, "v4": 20.024, "amplitude": 36.663, "phase_angle": 13.890, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.014, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 145.592, 203.577, 157.611 ], "x_axis": [ 0.224, 0.967, -0.123 ], "y_axis": [ -0.192, 0.168, 0.967 ], "z_axis": [ 0.955, -0.193, 0.224 ], "quaternion": [ 0.635, 0.456, 0.424, 0.456 ] } }, { "index": 974, "index_chain": 974, "chain_name": "2", "nt_resnum": 1127, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1127", "linked_nts": [ "///2/1126", "///2/1128" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.898, "beta": 179.533, "gamma": 51.141, "delta": 81.074, "epsilon": -150.087, "zeta": -74.382, "epsilon_zeta": -75.705, "bb_type": "BI", "chi": -160.180, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.794, 0.534 ], "P_xyz": [ 1.191, 9.278, 0.987 ], "form": "A", "ssZp": 4.396, "Dp": 4.590, "splay_angle": 24.915, "splay_distance": 4.003, "splay_ratio": 0.217, "d22": 4.570, "d64": 4.765, "eta": 166.506, "theta": -148.233, "eta_prime": -176.474, "theta_prime": -145.512, "eta_base": -123.487, "theta_base": -121.567, "v0": 1.274, "v1": -23.270, "v2": 35.178, "v3": -35.428, "v4": 21.526, "amplitude": 36.720, "phase_angle": 16.666, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 149.127, 204.463, 156.773 ], "x_axis": [ 0.027, 0.826, 0.564 ], "y_axis": [ -0.226, -0.544, 0.808 ], "z_axis": [ 0.974, -0.150, 0.172 ], "quaternion": [ 0.405, 0.592, 0.253, 0.650 ] } }, { "index": 975, "index_chain": 975, "chain_name": "2", "nt_resnum": 1128, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1128", "linked_nts": [ "///2/1127", "///2/1129" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.510, "beta": 170.106, "gamma": 57.548, "delta": 79.721, "epsilon": -135.602, "zeta": -79.136, "epsilon_zeta": -56.466, "bb_type": "BI", "chi": -157.311, "glyco_bond": "anti", "C5prime_xyz": [ -1.474, 8.839, 0.343 ], "P_xyz": [ 1.090, 9.373, 0.254 ], "form": ".", "ssZp": 4.284, "Dp": 4.677, "splay_angle": 17.089, "splay_distance": 2.768, "splay_ratio": 0.149, "d22": null, "d64": null, "eta": 174.582, "theta": -142.027, "eta_prime": -173.396, "theta_prime": -140.651, "eta_base": -139.494, "theta_base": -130.826, "v0": 0.198, "v1": -22.945, "v2": 35.674, "v3": -36.560, "v4": 22.917, "amplitude": 37.577, "phase_angle": 18.311, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.957, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 153.047, 205.275, 156.745 ], "x_axis": [ -0.118, 0.451, 0.885 ], "y_axis": [ -0.159, -0.888, 0.431 ], "z_axis": [ 0.980, -0.090, 0.177 ], "quaternion": [ 0.207, 0.631, 0.116, 0.739 ] } }, { "index": 976, "index_chain": 976, "chain_name": "2", "nt_resnum": 1129, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1129", "linked_nts": [ "///2/1128", "///2/1130" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -74.633, "beta": -174.736, "gamma": 43.704, "delta": 82.812, "epsilon": -162.189, "zeta": -79.621, "epsilon_zeta": -82.568, "bb_type": "BI", "chi": -131.250, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.612, -1.155 ], "P_xyz": [ 1.156, 9.219, -1.308 ], "form": ".", "ssZp": 3.354, "Dp": 4.496, "splay_angle": 31.469, "splay_distance": 5.485, "splay_ratio": 0.355, "d22": null, "d64": null, "eta": 154.905, "theta": -162.160, "eta_prime": 165.486, "theta_prime": -165.013, "eta_base": -173.427, "theta_base": -93.111, "v0": 2.951, "v1": -24.001, "v2": 34.747, "v3": -33.971, "v4": 19.603, "amplitude": 35.808, "phase_angle": 13.979, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.718, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 155.648, 206.116, 157.178 ], "x_axis": [ -0.619, -0.049, 0.784 ], "y_axis": [ 0.255, -0.957, 0.141 ], "z_axis": [ 0.743, 0.287, 0.605 ], "quaternion": [ -0.085, 0.428, 0.120, 0.892 ] } }, { "index": 977, "index_chain": 977, "chain_name": "2", "nt_resnum": 1130, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1130", "linked_nts": [ "///2/1129", "///2/1131" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -61.694, "beta": 161.201, "gamma": 52.283, "delta": 79.191, "epsilon": -145.979, "zeta": -71.939, "epsilon_zeta": -74.040, "bb_type": "BI", "chi": 49.876, "glyco_bond": "syn", "C5prime_xyz": [ -5.477, 3.931, 1.190 ], "P_xyz": [ -5.278, 1.489, 2.126 ], "form": ".", "ssZp": -3.162, "Dp": 4.545, "splay_angle": 38.541, "splay_distance": 5.787, "splay_ratio": 0.341, "d22": null, "d64": null, "eta": 163.294, "theta": -142.611, "eta_prime": 170.266, "theta_prime": -140.482, "eta_base": -105.481, "theta_base": -175.438, "v0": -2.742, "v1": -20.242, "v2": 34.198, "v3": -36.738, "v4": 24.886, "amplitude": 37.082, "phase_angle": 22.744, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.806, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 158.349, 203.211, 160.966 ], "x_axis": [ -0.708, 0.704, -0.059 ], "y_axis": [ 0.466, 0.403, -0.787 ], "z_axis": [ -0.531, -0.585, -0.614 ], "quaternion": [ -0.143, 0.355, 0.825, -0.416 ] } }, { "index": 978, "index_chain": 978, "chain_name": "2", "nt_resnum": 1131, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1131", "linked_nts": [ "///2/1130", "///2/1132" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -64.225, "beta": -176.326, "gamma": 47.643, "delta": 81.997, "epsilon": -160.870, "zeta": -83.359, "epsilon_zeta": -77.511, "bb_type": "BI", "chi": -168.150, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.660, 1.035 ], "P_xyz": [ 1.107, 8.989, 1.934 ], "form": ".", "ssZp": 4.481, "Dp": 4.522, "splay_angle": 31.051, "splay_distance": 4.923, "splay_ratio": 0.271, "d22": null, "d64": null, "eta": 168.249, "theta": -166.400, "eta_prime": -178.154, "theta_prime": -163.530, "eta_base": 164.160, "theta_base": -163.303, "v0": 2.796, "v1": -24.173, "v2": 35.172, "v3": -34.556, "v4": 20.039, "amplitude": 36.299, "phase_angle": 14.317, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.904, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 159.497, 208.235, 163.599 ], "x_axis": [ -0.568, -0.822, -0.041 ], "y_axis": [ 0.695, -0.452, -0.559 ], "z_axis": [ 0.441, -0.346, 0.828 ], "quaternion": [ -0.449, 0.119, -0.268, 0.844 ] } }, { "index": 979, "index_chain": 979, "chain_name": "2", "nt_resnum": 1132, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1132", "linked_nts": [ "///2/1131", "///2/1133" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.161, "beta": -172.468, "gamma": 43.971, "delta": 80.244, "epsilon": -148.324, "zeta": -72.570, "epsilon_zeta": -75.754, "bb_type": "BI", "chi": -155.681, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.790, 0.272 ], "P_xyz": [ 1.187, 9.363, 0.850 ], "form": ".", "ssZp": 4.313, "Dp": 4.643, "splay_angle": 30.210, "splay_distance": 5.172, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 175.455, "theta": -113.426, "eta_prime": 174.887, "theta_prime": -116.302, "eta_base": 176.253, "theta_base": -84.255, "v0": 2.310, "v1": -24.571, "v2": 36.288, "v3": -35.970, "v4": 21.217, "amplitude": 37.601, "phase_angle": 15.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.702, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 160.522, 210.760, 167.699 ], "x_axis": [ -0.443, -0.871, -0.213 ], "y_axis": [ 0.827, -0.306, -0.472 ], "z_axis": [ 0.346, -0.385, 0.855 ], "quaternion": [ 0.526, -0.041, 0.266, -0.807 ] } }, { "index": 980, "index_chain": 980, "chain_name": "2", "nt_resnum": 1133, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1133", "linked_nts": [ "///2/1132", "///2/1134" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 146.436, "beta": -150.076, "gamma": -175.264, "delta": 80.296, "epsilon": -146.173, "zeta": -76.201, "epsilon_zeta": -69.972, "bb_type": "BI", "chi": -175.975, "glyco_bond": "anti", "C5prime_xyz": [ -1.455, 8.458, 1.438 ], "P_xyz": [ -0.083, 10.273, 0.136 ], "form": ".", "ssZp": 4.692, "Dp": 4.692, "splay_angle": 33.660, "splay_distance": 5.180, "splay_ratio": 0.293, "d22": null, "d64": null, "eta": 164.980, "theta": -172.513, "eta_prime": -169.405, "theta_prime": -168.351, "eta_base": -113.270, "theta_base": -143.659, "v0": 3.910, "v1": -26.233, "v2": 37.434, "v3": -36.168, "v4": 20.355, "amplitude": 38.403, "phase_angle": 12.897, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.756, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 159.569, 206.145, 169.829 ], "x_axis": [ 0.139, -0.815, -0.563 ], "y_axis": [ 0.949, 0.272, -0.159 ], "z_axis": [ 0.283, -0.512, 0.811 ], "quaternion": [ 0.745, 0.118, 0.284, -0.592 ] } }, { "index": 981, "index_chain": 981, "chain_name": "2", "nt_resnum": 1134, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1134", "linked_nts": [ "///2/1133", "///2/1135" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -53.605, "beta": 175.821, "gamma": 52.429, "delta": 79.658, "epsilon": -138.218, "zeta": -82.917, "epsilon_zeta": -55.300, "bb_type": "BI", "chi": 175.639, "glyco_bond": "anti", "C5prime_xyz": [ -1.763, 8.424, 1.876 ], "P_xyz": [ 0.581, 8.748, 2.996 ], "form": "A", "ssZp": 4.624, "Dp": 4.651, "splay_angle": 25.232, "splay_distance": 3.912, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": -179.290, "theta": -148.140, "eta_prime": -169.275, "theta_prime": -142.934, "eta_base": -136.654, "theta_base": -113.821, "v0": 0.095, "v1": -22.755, "v2": 35.494, "v3": -36.446, "v4": 22.923, "amplitude": 37.425, "phase_angle": 18.485, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.870, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 158.742, 202.741, 173.645 ], "x_axis": [ 0.496, -0.480, -0.724 ], "y_axis": [ 0.621, 0.778, -0.091 ], "z_axis": [ 0.607, -0.405, 0.684 ], "quaternion": [ 0.860, 0.091, 0.387, -0.320 ] } }, { "index": 982, "index_chain": 982, "chain_name": "2", "nt_resnum": 1135, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1135", "linked_nts": [ "///2/1134", "///2/1136" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -57.292, "beta": 175.660, "gamma": 46.518, "delta": 82.830, "epsilon": -151.579, "zeta": -76.142, "epsilon_zeta": -75.437, "bb_type": "BI", "chi": -168.064, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.660, 1.035 ], "P_xyz": [ 1.206, 8.894, 1.834 ], "form": "A", "ssZp": 4.496, "Dp": 4.568, "splay_angle": 22.239, "splay_distance": 3.561, "splay_ratio": 0.195, "d22": 4.558, "d64": 4.560, "eta": 170.268, "theta": -149.358, "eta_prime": -178.972, "theta_prime": -147.871, "eta_base": -139.854, "theta_base": -134.364, "v0": 2.496, "v1": -23.634, "v2": 34.595, "v3": -34.154, "v4": 19.977, "amplitude": 35.771, "phase_angle": 14.735, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.798, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 159.794, 199.644, 175.792 ], "x_axis": [ 0.711, 0.126, -0.692 ], "y_axis": [ 0.160, 0.929, 0.334 ], "z_axis": [ 0.684, -0.348, 0.641 ], "quaternion": [ 0.906, 0.188, 0.380, -0.010 ] } }, { "index": 983, "index_chain": 983, "chain_name": "2", "nt_resnum": 1136, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1136", "linked_nts": [ "///2/1135", "///2/1137" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -61.998, "beta": 175.707, "gamma": 48.865, "delta": 81.518, "epsilon": -155.907, "zeta": -72.708, "epsilon_zeta": -83.199, "bb_type": "BI", "chi": -161.806, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.745, 0.631 ], "P_xyz": [ 1.015, 9.271, 1.183 ], "form": "A", "ssZp": 4.382, "Dp": 4.522, "splay_angle": 20.802, "splay_distance": 3.305, "splay_ratio": 0.182, "d22": 4.420, "d64": 4.192, "eta": 168.008, "theta": -150.579, "eta_prime": 178.839, "theta_prime": -149.769, "eta_base": -155.695, "theta_base": -126.210, "v0": 0.855, "v1": -22.683, "v2": 34.629, "v3": -35.092, "v4": 21.611, "amplitude": 36.267, "phase_angle": 17.286, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 161.184, 196.746, 177.325 ], "x_axis": [ 0.631, 0.554, -0.544 ], "y_axis": [ -0.126, 0.764, 0.632 ], "z_axis": [ 0.766, -0.330, 0.552 ], "quaternion": [ 0.858, 0.280, 0.381, 0.198 ] } }, { "index": 984, "index_chain": 984, "chain_name": "2", "nt_resnum": 1137, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1137", "linked_nts": [ "///2/1136", "///2/1138" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -64.304, "beta": 178.140, "gamma": 45.234, "delta": 74.987, "epsilon": 72.649, "zeta": 87.769, "epsilon_zeta": -15.120, "bb_type": "--", "chi": -156.510, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.719, 0.318 ], "P_xyz": [ 1.247, 9.174, 0.617 ], "form": ".", "ssZp": 3.148, "Dp": 3.297, "splay_angle": 115.346, "splay_distance": 16.407, "splay_ratio": 0.845, "d22": 11.201, "d64": 14.539, "eta": -171.008, "theta": -101.973, "eta_prime": -157.312, "theta_prime": -138.835, "eta_base": -126.374, "theta_base": -141.430, "v0": 4.120, "v1": -26.544, "v2": 37.913, "v3": -36.533, "v4": 20.452, "amplitude": 38.866, "phase_angle": 12.712, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.798, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 163.836, 194.868, 177.930 ], "x_axis": [ 0.407, 0.896, -0.177 ], "y_axis": [ -0.358, 0.334, 0.872 ], "z_axis": [ 0.841, -0.291, 0.456 ], "quaternion": [ 0.741, 0.392, 0.343, 0.423 ] } }, { "index": 985, "index_chain": 985, "chain_name": "2", "nt_resnum": 1138, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1138", "linked_nts": [ "///2/1137", "///2/1139" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 30.694, "beta": -175.674, "gamma": 20.745, "delta": 146.521, "epsilon": -91.499, "zeta": -176.153, "epsilon_zeta": 84.654, "bb_type": "BII", "chi": -114.168, "glyco_bond": "anti", "C5prime_xyz": [ -1.628, 8.384, -1.500 ], "P_xyz": [ 0.400, 9.805, -0.635 ], "form": ".", "ssZp": 0.539, "Dp": 0.955, "splay_angle": 133.358, "splay_distance": 15.099, "splay_ratio": 0.925, "d22": 13.737, "d64": 14.678, "eta": -46.597, "theta": -152.527, "eta_prime": -6.331, "theta_prime": 175.430, "eta_base": -20.018, "theta_base": 93.381, "v0": -17.474, "v1": 32.053, "v2": -33.608, "v3": 24.403, "v4": -4.559, "amplitude": 34.266, "phase_angle": 168.755, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 167.294, 185.410, 190.883 ], "x_axis": [ -0.394, 0.231, 0.889 ], "y_axis": [ -0.583, 0.685, -0.437 ], "z_axis": [ -0.710, -0.691, -0.135 ], "quaternion": [ 0.537, 0.118, -0.744, 0.379 ] } }, { "index": 986, "index_chain": 986, "chain_name": "2", "nt_resnum": 1139, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1139", "linked_nts": [ "///2/1138", "///2/1140" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": 86.506, "beta": 165.624, "gamma": 47.060, "delta": 81.016, "epsilon": -126.030, "zeta": -71.727, "epsilon_zeta": -54.303, "bb_type": "--", "chi": 10.704, "glyco_bond": "syn", "C5prime_xyz": [ -5.528, 4.055, -0.963 ], "P_xyz": [ -5.530, 1.508, -1.582 ], "form": ".", "ssZp": -4.440, "Dp": 4.608, "splay_angle": 26.899, "splay_distance": 4.088, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": -11.959, "theta": -123.801, "eta_prime": 1.203, "theta_prime": -116.622, "eta_base": 66.869, "theta_base": -128.202, "v0": -0.734, "v1": -21.441, "v2": 34.152, "v3": -35.562, "v4": 22.884, "amplitude": 36.287, "phase_angle": 19.750, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4d", "suiteness": 0.336, "filter_rmsd": 0.070, "frame": { "rmsd": 0.010, "origin": [ 166.252, 193.891, 178.434 ], "x_axis": [ 0.668, 0.449, -0.594 ], "y_axis": [ 0.175, -0.870, -0.461 ], "z_axis": [ -0.724, 0.204, -0.659 ], "quaternion": [ -0.186, 0.894, 0.174, -0.368 ] } }, { "index": 987, "index_chain": 987, "chain_name": "2", "nt_resnum": 1140, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1140", "linked_nts": [ "///2/1139", "///2/1141" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -53.949, "beta": 153.637, "gamma": 56.669, "delta": 81.525, "epsilon": -145.200, "zeta": -79.279, "epsilon_zeta": -65.921, "bb_type": "BI", "chi": -159.773, "glyco_bond": "anti", "C5prime_xyz": [ -1.187, 8.709, 0.510 ], "P_xyz": [ 1.398, 8.777, 0.071 ], "form": "A", "ssZp": 4.437, "Dp": 4.691, "splay_angle": 26.978, "splay_distance": 4.308, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 161.201, "theta": -143.099, "eta_prime": -169.104, "theta_prime": -144.293, "eta_base": -159.856, "theta_base": -128.523, "v0": 4.589, "v1": -26.197, "v2": 36.695, "v3": -35.040, "v4": 19.232, "amplitude": 37.480, "phase_angle": 11.748, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.598, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 170.156, 194.129, 179.623 ], "x_axis": [ -0.620, 0.181, 0.764 ], "y_axis": [ -0.208, -0.976, 0.062 ], "z_axis": [ 0.757, -0.121, 0.643 ], "quaternion": [ 0.108, 0.422, -0.016, 0.900 ] } }, { "index": 988, "index_chain": 988, "chain_name": "2", "nt_resnum": 1141, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1141", "linked_nts": [ "///2/1140", "///2/1142" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop", "alpha": -53.365, "beta": 164.560, "gamma": 58.311, "delta": 80.411, "epsilon": -145.687, "zeta": -77.900, "epsilon_zeta": -67.788, "bb_type": "BI", "chi": -159.771, "glyco_bond": "anti", "C5prime_xyz": [ -1.582, 8.829, 0.494 ], "P_xyz": [ 0.978, 9.368, 0.406 ], "form": "A", "ssZp": 4.371, "Dp": 4.602, "splay_angle": 23.191, "splay_distance": 3.688, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 177.133, "theta": -146.458, "eta_prime": -169.020, "theta_prime": -146.136, "eta_base": -138.409, "theta_base": -114.637, "v0": -0.254, "v1": -22.173, "v2": 34.910, "v3": -36.049, "v4": 22.899, "amplitude": 36.925, "phase_angle": 19.016, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.824, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 172.935, 195.250, 182.719 ], "x_axis": [ -0.706, -0.270, 0.655 ], "y_axis": [ 0.107, -0.954, -0.279 ], "z_axis": [ 0.700, -0.127, 0.702 ], "quaternion": [ -0.103, 0.369, -0.111, 0.917 ] } }, { "index": 989, "index_chain": 989, "chain_name": "2", "nt_resnum": 1142, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1142", "linked_nts": [ "///2/1141", "///2/1143" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,cap-acceptor,splayed-apart", "alpha": -59.144, "beta": 169.021, "gamma": 50.303, "delta": 80.150, "epsilon": -137.493, "zeta": -53.639, "epsilon_zeta": -83.854, "bb_type": "BI", "chi": -154.343, "glyco_bond": "anti", "C5prime_xyz": [ -1.285, 8.783, 0.177 ], "P_xyz": [ 1.308, 9.148, 0.096 ], "form": ".", "ssZp": 4.217, "Dp": 4.719, "splay_angle": 85.482, "splay_distance": 11.993, "splay_ratio": 0.679, "d22": null, "d64": null, "eta": 168.929, "theta": -113.456, "eta_prime": -179.155, "theta_prime": -159.949, "eta_base": -135.073, "theta_base": 140.353, "v0": 3.098, "v1": -25.385, "v2": 36.826, "v3": -36.058, "v4": 20.796, "amplitude": 37.962, "phase_angle": 14.053, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.932, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 174.295, 195.161, 186.146 ], "x_axis": [ -0.570, -0.770, 0.287 ], "y_axis": [ 0.577, -0.624, -0.527 ], "z_axis": [ 0.585, -0.135, 0.800 ], "quaternion": [ -0.389, 0.252, -0.191, 0.865 ] } }, { "index": 990, "index_chain": 990, "chain_name": "2", "nt_resnum": 1143, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1143", "linked_nts": [ "///2/1142", "///2/1144" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,A-minor,phosphate,splayed-apart", "alpha": -177.208, "beta": 133.493, "gamma": 45.820, "delta": 85.027, "epsilon": -114.149, "zeta": -110.510, "epsilon_zeta": -3.638, "bb_type": "--", "chi": -158.827, "glyco_bond": "anti", "C5prime_xyz": [ -1.317, 8.694, 0.518 ], "P_xyz": [ 1.291, 8.400, 0.415 ], "form": ".", "ssZp": 4.105, "Dp": 4.632, "splay_angle": 21.398, "splay_distance": 3.496, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 26.176, "theta": -142.714, "eta_prime": 51.142, "theta_prime": -142.421, "eta_base": 26.298, "theta_base": -113.341, "v0": 2.267, "v1": -22.477, "v2": 32.959, "v3": -32.596, "v4": 19.169, "amplitude": 34.108, "phase_angle": 14.916, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.538, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 185.405, 199.406, 184.608 ], "x_axis": [ 0.147, -0.234, -0.961 ], "y_axis": [ -0.320, -0.931, 0.178 ], "z_axis": [ -0.936, 0.281, -0.211 ], "quaternion": [ -0.034, 0.756, -0.183, -0.627 ] } }, { "index": 991, "index_chain": 991, "chain_name": "2", "nt_resnum": 1144, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1144", "linked_nts": [ "///2/1143", "///2/1145" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,u-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,junction-loop,cap-donor,phosphate", "alpha": -53.321, "beta": 126.250, "gamma": 64.082, "delta": 83.533, "epsilon": -155.217, "zeta": -76.321, "epsilon_zeta": -78.896, "bb_type": "BI", "chi": -155.708, "glyco_bond": "anti", "C5prime_xyz": [ -1.288, 8.707, 0.289 ], "P_xyz": [ 1.090, 8.385, -0.768 ], "form": "A", "ssZp": 4.293, "Dp": 4.559, "splay_angle": 23.684, "splay_distance": 3.676, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 156.941, "theta": -140.554, "eta_prime": 178.688, "theta_prime": -151.208, "eta_base": -133.564, "theta_base": -128.372, "v0": 3.160, "v1": -24.094, "v2": 34.674, "v3": -33.806, "v4": 19.378, "amplitude": 35.683, "phase_angle": 13.657, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.707, "filter_rmsd": 0.039, "frame": { "rmsd": 0.002, "origin": [ 182.160, 199.899, 183.405 ], "x_axis": [ -0.022, -0.688, -0.725 ], "y_axis": [ -0.506, -0.618, 0.602 ], "z_axis": [ -0.862, 0.380, -0.335 ], "quaternion": [ 0.080, 0.695, -0.430, -0.571 ] } }, { "index": 992, "index_chain": 992, "chain_name": "2", "nt_resnum": 1145, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1145", "linked_nts": [ "///2/1144", "///2/1146" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,u-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,hairpin-loop,junction-loop,phosphate", "alpha": -61.684, "beta": 167.534, "gamma": 56.040, "delta": 83.422, "epsilon": -141.017, "zeta": -44.348, "epsilon_zeta": -96.669, "bb_type": "BI", "chi": -157.635, "glyco_bond": "anti", "C5prime_xyz": [ -1.021, 8.645, 0.413 ], "P_xyz": [ 1.603, 8.695, 0.320 ], "form": ".", "ssZp": 4.344, "Dp": 4.684, "splay_angle": 54.978, "splay_distance": 8.833, "splay_ratio": 0.464, "d22": null, "d64": null, "eta": 172.251, "theta": -73.754, "eta_prime": -175.026, "theta_prime": -73.989, "eta_base": -132.632, "theta_base": -44.256, "v0": 5.030, "v1": -25.664, "v2": 35.450, "v3": -33.536, "v4": 18.004, "amplitude": 36.091, "phase_angle": 10.817, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.928, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 179.399, 201.113, 181.304 ], "x_axis": [ -0.286, -0.927, -0.242 ], "y_axis": [ -0.449, -0.094, 0.889 ], "z_axis": [ -0.847, 0.362, -0.390 ], "quaternion": [ -0.240, -0.547, 0.629, 0.497 ] } }, { "index": 993, "index_chain": 993, "chain_name": "2", "nt_resnum": 1146, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1146", "linked_nts": [ "///2/1145", "///2/1147" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop", "alpha": 155.011, "beta": -145.519, "gamma": 174.469, "delta": 81.263, "epsilon": -155.334, "zeta": -78.343, "epsilon_zeta": -76.991, "bb_type": "BI", "chi": -162.711, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.767, 0.685 ], "P_xyz": [ 0.187, 9.940, -1.082 ], "form": "A", "ssZp": 4.441, "Dp": 4.560, "splay_angle": 24.788, "splay_distance": 3.920, "splay_ratio": 0.215, "d22": 4.757, "d64": 4.906, "eta": 164.410, "theta": -173.816, "eta_prime": -148.930, "theta_prime": -175.457, "eta_base": -80.861, "theta_base": -158.340, "v0": 1.370, "v1": -23.383, "v2": 35.248, "v3": -35.439, "v4": 21.484, "amplitude": 36.765, "phase_angle": 16.518, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.421, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 173.338, 194.964, 183.169 ], "x_axis": [ -0.562, -0.309, 0.767 ], "y_axis": [ -0.111, 0.947, 0.301 ], "z_axis": [ -0.820, 0.084, -0.567 ], "quaternion": [ -0.452, -0.120, 0.877, 0.110 ] } }, { "index": 994, "index_chain": 994, "chain_name": "2", "nt_resnum": 1147, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1147", "linked_nts": [ "///2/1146", "///2/1148" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor", "alpha": -60.727, "beta": 172.265, "gamma": 52.707, "delta": 80.025, "epsilon": -145.518, "zeta": -55.497, "epsilon_zeta": -90.021, "bb_type": "BI", "chi": -161.492, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.756, 0.608 ], "P_xyz": [ 1.279, 9.152, 0.776 ], "form": ".", "ssZp": 4.469, "Dp": 4.670, "splay_angle": 49.451, "splay_distance": 7.402, "splay_ratio": 0.418, "d22": null, "d64": null, "eta": 171.920, "theta": -132.495, "eta_prime": -179.338, "theta_prime": -141.180, "eta_base": -152.527, "theta_base": -114.757, "v0": 2.489, "v1": -25.009, "v2": 36.788, "v3": -36.360, "v4": 21.334, "amplitude": 38.074, "phase_angle": 14.933, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.930, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 170.892, 193.733, 180.365 ], "x_axis": [ -0.535, 0.122, 0.836 ], "y_axis": [ 0.121, 0.990, -0.067 ], "z_axis": [ -0.836, 0.065, -0.544 ], "quaternion": [ -0.477, 0.069, 0.876, -0.001 ] } }, { "index": 995, "index_chain": 995, "chain_name": "2", "nt_resnum": 1148, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1148", "linked_nts": [ "///2/1147", "///2/1149" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor,phosphate", "alpha": -168.518, "beta": 115.869, "gamma": -136.570, "delta": 145.775, "epsilon": -111.013, "zeta": 100.663, "epsilon_zeta": 148.325, "bb_type": "--", "chi": 49.104, "glyco_bond": "syn", "C5prime_xyz": [ -5.462, 3.732, 0.613 ], "P_xyz": [ -7.911, 3.533, 1.539 ], "form": ".", "ssZp": -1.229, "Dp": 1.200, "splay_angle": 53.202, "splay_distance": 8.061, "splay_ratio": 0.480, "d22": null, "d64": null, "eta": -121.717, "theta": 71.787, "eta_prime": -127.814, "theta_prime": 68.322, "eta_base": -120.015, "theta_base": 127.351, "v0": -22.443, "v1": 36.139, "v2": -35.296, "v3": 23.265, "v4": -0.707, "amplitude": 37.044, "phase_angle": 162.328, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 163.979, 194.452, 177.819 ], "x_axis": [ -0.339, -0.941, 0.013 ], "y_axis": [ 0.417, -0.163, -0.894 ], "z_axis": [ 0.843, -0.298, 0.447 ], "quaternion": [ -0.486, 0.307, -0.427, 0.698 ] } }, { "index": 996, "index_chain": 996, "chain_name": "2", "nt_resnum": 1149, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1149", "linked_nts": [ "///2/1148", "///2/1150" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,splayed-apart", "alpha": 64.705, "beta": -138.714, "gamma": -162.145, "delta": 146.625, "epsilon": -151.056, "zeta": -142.394, "epsilon_zeta": -8.662, "bb_type": "--", "chi": 62.462, "glyco_bond": "syn", "C5prime_xyz": [ -5.297, 3.921, 1.307 ], "P_xyz": [ -5.231, 2.495, 3.514 ], "form": ".", "ssZp": -1.930, "Dp": 1.915, "splay_angle": 102.470, "splay_distance": 14.893, "splay_ratio": 0.780, "d22": null, "d64": null, "eta": -171.527, "theta": -174.223, "eta_prime": 179.979, "theta_prime": 144.820, "eta_base": -116.363, "theta_base": 87.975, "v0": -21.332, "v1": 35.372, "v2": -35.143, "v3": 23.733, "v4": -1.699, "amplitude": 36.582, "phase_angle": 163.874, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 168.287, 192.531, 171.281 ], "x_axis": [ -0.182, -0.656, 0.732 ], "y_axis": [ 0.653, 0.476, 0.589 ], "z_axis": [ -0.735, 0.585, 0.342 ], "quaternion": [ 0.640, 0.001, -0.574, -0.512 ] } }, { "index": 997, "index_chain": 997, "chain_name": "2", "nt_resnum": 1150, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1150", "linked_nts": [ "///2/1149", "///2/1151" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 128.497, "beta": -144.219, "gamma": 57.943, "delta": 147.856, "epsilon": -93.791, "zeta": -118.526, "epsilon_zeta": 24.735, "bb_type": "--", "chi": -148.681, "glyco_bond": "anti", "C5prime_xyz": [ -1.833, 8.681, 0.370 ], "P_xyz": [ -0.357, 9.047, 2.512 ], "form": ".", "ssZp": 0.704, "Dp": 0.753, "splay_angle": 122.707, "splay_distance": 16.965, "splay_ratio": 0.878, "d22": null, "d64": null, "eta": 50.041, "theta": -44.963, "eta_prime": 67.460, "theta_prime": -75.325, "eta_base": 64.887, "theta_base": -51.419, "v0": -20.668, "v1": 35.350, "v2": -35.711, "v3": 24.722, "v4": -2.740, "amplitude": 36.897, "phase_angle": 165.435, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 176.113, 201.843, 179.875 ], "x_axis": [ -0.004, 0.956, -0.294 ], "y_axis": [ 0.228, -0.285, -0.931 ], "z_axis": [ -0.974, -0.071, -0.217 ], "quaternion": [ -0.351, 0.612, 0.484, -0.518 ] } }, { "index": 998, "index_chain": 998, "chain_name": "2", "nt_resnum": 1151, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1151", "linked_nts": [ "///2/1150", "///2/1152" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -170.850, "beta": -144.365, "gamma": 152.430, "delta": 82.654, "epsilon": -116.534, "zeta": -88.753, "epsilon_zeta": -27.781, "bb_type": "--", "chi": 172.059, "glyco_bond": "anti", "C5prime_xyz": [ -1.558, 8.250, 2.105 ], "P_xyz": [ 0.847, 9.153, 1.617 ], "form": "A", "ssZp": 4.616, "Dp": 4.664, "splay_angle": 25.861, "splay_distance": 4.075, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 160.164, "theta": -141.809, "eta_prime": -157.126, "theta_prime": -140.831, "eta_base": -136.091, "theta_base": -112.941, "v0": 2.130, "v1": -23.035, "v2": 34.010, "v3": -33.768, "v4": 19.960, "amplitude": 35.253, "phase_angle": 15.263, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 170.804, 190.806, 168.136 ], "x_axis": [ 0.401, 0.690, -0.602 ], "y_axis": [ 0.535, 0.357, 0.766 ], "z_axis": [ 0.744, -0.629, -0.226 ], "quaternion": [ 0.619, 0.563, 0.544, 0.063 ] } }, { "index": 999, "index_chain": 999, "chain_name": "2", "nt_resnum": 1152, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1152", "linked_nts": [ "///2/1151", "///2/1153" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -53.833, "beta": 162.578, "gamma": 50.039, "delta": 81.261, "epsilon": -143.151, "zeta": 97.724, "epsilon_zeta": 119.124, "bb_type": "--", "chi": -158.716, "glyco_bond": "anti", "C5prime_xyz": [ -1.493, 8.770, 0.440 ], "P_xyz": [ 1.086, 9.206, 0.519 ], "form": ".", "ssZp": 4.341, "Dp": 4.619, "splay_angle": 88.281, "splay_distance": 14.381, "splay_ratio": 0.701, "d22": 6.745, "d64": 8.318, "eta": 165.322, "theta": 17.756, "eta_prime": -177.821, "theta_prime": -17.631, "eta_base": -134.655, "theta_base": -47.986, "v0": 0.506, "v1": -22.536, "v2": 34.737, "v3": -35.429, "v4": 22.044, "amplitude": 36.494, "phase_angle": 17.851, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.383, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 173.170, 188.647, 165.617 ], "x_axis": [ 0.664, 0.747, 0.007 ], "y_axis": [ 0.195, -0.182, 0.964 ], "z_axis": [ 0.721, -0.639, -0.267 ], "quaternion": [ 0.551, 0.727, 0.324, 0.251 ] } }, { "index": 1000, "index_chain": 1000, "chain_name": "2", "nt_resnum": 1153, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1153", "linked_nts": [ "///2/1152", "///2/1154" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -99.482, "beta": -144.873, "gamma": -87.136, "delta": 148.085, "epsilon": -131.184, "zeta": 164.279, "epsilon_zeta": 64.538, "bb_type": "BII", "chi": -138.020, "glyco_bond": "anti", "C5prime_xyz": [ -1.766, 8.760, -0.242 ], "P_xyz": [ -1.488, 11.248, -1.031 ], "form": ".", "ssZp": 1.452, "Dp": 1.537, "splay_angle": 50.613, "splay_distance": 7.918, "splay_ratio": 0.433, "d22": 12.272, "d64": 12.514, "eta": 90.034, "theta": 116.285, "eta_prime": 123.384, "theta_prime": 130.836, "eta_base": 163.078, "theta_base": 161.360, "v0": -21.407, "v1": 36.160, "v2": -36.241, "v3": 24.830, "v4": -2.351, "amplitude": 37.562, "phase_angle": 164.762, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 184.728, 189.050, 174.163 ], "x_axis": [ -0.266, 0.785, -0.560 ], "y_axis": [ -0.864, -0.452, -0.223 ], "z_axis": [ -0.429, 0.424, 0.798 ], "quaternion": [ 0.520, -0.312, 0.063, 0.793 ] } }, { "index": 1001, "index_chain": 1001, "chain_name": "2", "nt_resnum": 1154, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1154", "linked_nts": [ "///2/1153", "///2/1155" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": 47.962, "beta": -169.740, "gamma": -62.141, "delta": 148.018, "epsilon": -156.845, "zeta": 123.579, "epsilon_zeta": 79.576, "bb_type": "--", "chi": 40.686, "glyco_bond": "syn", "C5prime_xyz": [ -5.531, 3.927, 0.198 ], "P_xyz": [ -7.933, 2.996, -0.307 ], "form": ".", "ssZp": -1.693, "Dp": 1.972, "splay_angle": 126.864, "splay_distance": 16.988, "splay_ratio": 0.895, "d22": 10.881, "d64": 14.004, "eta": -132.765, "theta": 75.449, "eta_prime": -150.091, "theta_prime": 34.014, "eta_base": -148.068, "theta_base": -24.032, "v0": -21.831, "v1": 36.490, "v2": -36.369, "v3": 24.722, "v4": -2.019, "amplitude": 37.789, "phase_angle": 164.245, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.005, "origin": [ 186.989, 183.730, 179.574 ], "x_axis": [ 0.954, -0.091, 0.287 ], "y_axis": [ -0.041, -0.983, -0.177 ], "z_axis": [ 0.298, 0.157, -0.941 ], "quaternion": [ -0.085, 0.985, -0.033, 0.149 ] } }, { "index": 1002, "index_chain": 1002, "chain_name": "2", "nt_resnum": 1155, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1155", "linked_nts": [ "///2/1154", "///2/1156" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 40.828, "beta": -136.189, "gamma": 77.509, "delta": 146.897, "epsilon": -87.873, "zeta": -61.735, "epsilon_zeta": -26.138, "bb_type": "--", "chi": -122.504, "glyco_bond": "anti", "C5prime_xyz": [ -1.824, 8.538, -1.076 ], "P_xyz": [ 0.425, 9.035, 0.188 ], "form": ".", "ssZp": 0.533, "Dp": 0.685, "splay_angle": 117.603, "splay_distance": 16.804, "splay_ratio": 0.856, "d22": 9.202, "d64": 10.918, "eta": 15.927, "theta": -23.302, "eta_prime": 39.636, "theta_prime": -42.597, "eta_base": 82.967, "theta_base": -17.011, "v0": -20.086, "v1": 34.483, "v2": -34.907, "v3": 24.235, "v4": -2.808, "amplitude": 36.035, "phase_angle": 165.630, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.005, "origin": [ 172.486, 174.974, 178.323 ], "x_axis": [ 0.067, -0.229, 0.971 ], "y_axis": [ 0.997, 0.053, -0.057 ], "z_axis": [ -0.038, 0.972, 0.232 ], "quaternion": [ 0.581, -0.442, -0.434, -0.527 ] } }, { "index": 1003, "index_chain": 1003, "chain_name": "2", "nt_resnum": 1156, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1156", "linked_nts": [ "///2/1155", "///2/1157" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C2'-endo,isolated-canonical,non-pair-contact,internal-loop,cap-acceptor,splayed-apart", "alpha": -71.416, "beta": -158.210, "gamma": 71.785, "delta": 144.913, "epsilon": -140.711, "zeta": 9.668, "epsilon_zeta": 209.621, "bb_type": "--", "chi": -118.147, "glyco_bond": "anti", "C5prime_xyz": [ -2.048, 8.512, -1.344 ], "P_xyz": [ 0.337, 9.425, -0.742 ], "form": ".", "ssZp": 1.789, "Dp": 1.774, "splay_angle": 61.442, "splay_distance": 9.401, "splay_ratio": 0.515, "d22": null, "d64": null, "eta": 173.308, "theta": -12.218, "eta_prime": -130.645, "theta_prime": -75.607, "eta_base": -129.436, "theta_base": -69.728, "v0": -22.653, "v1": 35.950, "v2": -34.807, "v3": 22.617, "v4": -0.172, "amplitude": 36.700, "phase_angle": 161.514, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.476, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 188.645, 179.121, 176.312 ], "x_axis": [ 0.075, -0.976, 0.204 ], "y_axis": [ -0.845, -0.171, -0.506 ], "z_axis": [ 0.529, -0.134, -0.838 ], "quaternion": [ -0.129, 0.722, -0.631, 0.254 ] } }, { "index": 1004, "index_chain": 1004, "chain_name": "2", "nt_resnum": 1157, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1157", "linked_nts": [ "///2/1156", "///2/1158" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BII,internal-loop,splayed-apart", "alpha": -99.596, "beta": -86.853, "gamma": -99.058, "delta": 151.261, "epsilon": -89.005, "zeta": -153.918, "epsilon_zeta": 64.913, "bb_type": "BII", "chi": 55.785, "glyco_bond": "syn", "C5prime_xyz": [ -5.253, 3.708, 0.945 ], "P_xyz": [ -6.844, 3.780, 3.037 ], "form": ".", "ssZp": -0.507, "Dp": 0.580, "splay_angle": 155.340, "splay_distance": 18.972, "splay_ratio": 0.977, "d22": null, "d64": null, "eta": 120.596, "theta": 171.857, "eta_prime": 155.570, "theta_prime": 161.815, "eta_base": -174.387, "theta_base": 98.989, "v0": -18.506, "v1": 34.750, "v2": -36.801, "v3": 27.077, "v4": -5.582, "amplitude": 37.405, "phase_angle": 169.693, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 186.654, 176.118, 167.629 ], "x_axis": [ 0.804, -0.369, -0.466 ], "y_axis": [ -0.097, 0.692, -0.716 ], "z_axis": [ 0.586, 0.621, 0.521 ], "quaternion": [ 0.868, -0.385, 0.303, -0.078 ] } }, { "index": 1005, "index_chain": 1005, "chain_name": "2", "nt_resnum": 1158, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1158", "linked_nts": [ "///2/1157", "///2/1159" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart", "alpha": 53.307, "beta": 176.352, "gamma": 58.434, "delta": 79.386, "epsilon": -151.149, "zeta": -69.321, "epsilon_zeta": -81.828, "bb_type": "BI", "chi": -171.020, "glyco_bond": "anti", "C5prime_xyz": [ -1.556, 8.684, 1.143 ], "P_xyz": [ 0.972, 9.224, 1.583 ], "form": "A", "ssZp": 4.608, "Dp": 4.626, "splay_angle": 21.467, "splay_distance": 3.536, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": -52.708, "theta": -146.053, "eta_prime": -23.087, "theta_prime": -145.370, "eta_base": 40.985, "theta_base": -126.445, "v0": 1.231, "v1": -24.029, "v2": 36.420, "v3": -36.708, "v4": 22.351, "amplitude": 38.040, "phase_angle": 16.780, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.262, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 178.453, 191.683, 160.528 ], "x_axis": [ 0.048, 0.365, 0.930 ], "y_axis": [ 0.055, -0.930, 0.362 ], "z_axis": [ 0.997, 0.034, -0.065 ], "quaternion": [ 0.115, 0.715, 0.147, 0.674 ] } }, { "index": 1006, "index_chain": 1006, "chain_name": "2", "nt_resnum": 1159, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1159", "linked_nts": [ "///2/1158", "///2/1160" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -71.607, "beta": -170.043, "gamma": 45.163, "delta": 80.336, "epsilon": -149.073, "zeta": -77.281, "epsilon_zeta": -71.792, "bb_type": "BI", "chi": -158.493, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.818, 0.419 ], "P_xyz": [ 0.968, 9.499, 1.162 ], "form": "A", "ssZp": 4.366, "Dp": 4.610, "splay_angle": 24.394, "splay_distance": 3.846, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 164.989, "theta": -152.383, "eta_prime": 173.432, "theta_prime": -146.704, "eta_base": -156.299, "theta_base": -113.771, "v0": 0.761, "v1": -23.128, "v2": 35.437, "v3": -35.990, "v4": 22.203, "amplitude": 37.149, "phase_angle": 17.459, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.787, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 181.130, 193.959, 160.129 ], "x_axis": [ -0.191, -0.206, 0.960 ], "y_axis": [ 0.123, -0.975, -0.185 ], "z_axis": [ 0.974, 0.083, 0.211 ], "quaternion": [ -0.107, 0.627, -0.033, 0.771 ] } }, { "index": 1007, "index_chain": 1007, "chain_name": "2", "nt_resnum": 1160, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1160", "linked_nts": [ "///2/1159", "///2/1161" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate", "alpha": -58.907, "beta": 163.552, "gamma": 59.290, "delta": 81.231, "epsilon": -170.067, "zeta": -87.698, "epsilon_zeta": -82.369, "bb_type": "BI", "chi": -157.770, "glyco_bond": "anti", "C5prime_xyz": [ -1.385, 8.733, 0.392 ], "P_xyz": [ 1.198, 9.074, 0.118 ], "form": ".", "ssZp": 4.339, "Dp": 4.466, "splay_angle": 27.567, "splay_distance": 4.592, "splay_ratio": 0.245, "d22": 5.071, "d64": 5.567, "eta": 168.952, "theta": -146.173, "eta_prime": -172.556, "theta_prime": -157.787, "eta_base": -127.150, "theta_base": -162.053, "v0": 2.268, "v1": -24.165, "v2": 35.663, "v3": -35.337, "v4": 20.855, "amplitude": 36.950, "phase_angle": 15.170, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.883, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 184.291, 194.802, 162.151 ], "x_axis": [ -0.099, -0.709, 0.698 ], "y_axis": [ 0.281, -0.693, -0.664 ], "z_axis": [ 0.955, 0.130, 0.268 ], "quaternion": [ -0.345, 0.576, -0.186, 0.718 ] } }, { "index": 1008, "index_chain": 1008, "chain_name": "2", "nt_resnum": 1161, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1161", "linked_nts": [ "///2/1160", "///2/1162" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,junction-loop,A-minor,phosphate", "alpha": 174.793, "beta": -162.922, "gamma": 158.985, "delta": 82.827, "epsilon": -128.236, "zeta": -81.095, "epsilon_zeta": -47.141, "bb_type": "--", "chi": -179.433, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.429, 1.658 ], "P_xyz": [ 0.503, 9.872, 0.869 ], "form": "A", "ssZp": 4.593, "Dp": 4.645, "splay_angle": 24.556, "splay_distance": 3.876, "splay_ratio": 0.214, "d22": 4.691, "d64": 4.488, "eta": 166.754, "theta": -154.194, "eta_prime": 171.664, "theta_prime": -151.202, "eta_base": -179.115, "theta_base": -117.604, "v0": 1.776, "v1": -22.874, "v2": 34.041, "v3": -33.981, "v4": 20.323, "amplitude": 35.379, "phase_angle": 15.803, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.233, "filter_rmsd": 0.108, "frame": { "rmsd": 0.007, "origin": [ 186.863, 198.254, 163.751 ], "x_axis": [ -0.282, -0.855, 0.436 ], "y_axis": [ 0.325, -0.513, -0.795 ], "z_axis": [ 0.903, -0.082, 0.422 ], "quaternion": [ -0.396, 0.450, -0.295, 0.744 ] } }, { "index": 1009, "index_chain": 1009, "chain_name": "2", "nt_resnum": 1162, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1162", "linked_nts": [ "///2/1161", "///2/1163" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -65.124, "beta": 168.591, "gamma": 55.141, "delta": 82.111, "epsilon": -143.340, "zeta": -69.216, "epsilon_zeta": -74.124, "bb_type": "BI", "chi": -159.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.385, 8.793, 0.487 ], "P_xyz": [ 1.205, 9.181, 0.573 ], "form": ".", "ssZp": 4.363, "Dp": 4.622, "splay_angle": 28.599, "splay_distance": 4.496, "splay_ratio": 0.247, "d22": 4.074, "d64": 4.215, "eta": 164.100, "theta": -135.558, "eta_prime": -179.844, "theta_prime": -132.767, "eta_base": -133.899, "theta_base": -90.318, "v0": 1.371, "v1": -23.210, "v2": 34.952, "v3": -35.099, "v4": 21.283, "amplitude": 36.447, "phase_angle": 16.469, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.734, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 189.274, 197.583, 166.710 ], "x_axis": [ -0.052, -0.978, -0.203 ], "y_axis": [ 0.488, 0.152, -0.859 ], "z_axis": [ 0.871, -0.144, 0.469 ], "quaternion": [ 0.626, -0.285, 0.429, -0.585 ] } }, { "index": 1010, "index_chain": 1010, "chain_name": "2", "nt_resnum": 1163, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1163", "linked_nts": [ "///2/1162", "///2/1164" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper", "alpha": -64.339, "beta": 159.763, "gamma": 67.212, "delta": 82.726, "epsilon": -166.449, "zeta": -78.450, "epsilon_zeta": -87.999, "bb_type": "BI", "chi": -160.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.745, 0.571 ], "P_xyz": [ 1.304, 8.991, 0.129 ], "form": ".", "ssZp": 4.371, "Dp": 4.466, "splay_angle": 29.859, "splay_distance": 4.676, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 166.500, "theta": -159.888, "eta_prime": -166.783, "theta_prime": -161.196, "eta_base": -102.882, "theta_base": -161.588, "v0": 2.388, "v1": -23.431, "v2": 34.398, "v3": -33.964, "v4": 19.966, "amplitude": 35.590, "phase_angle": 14.871, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.641, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 192.418, 194.484, 167.564 ], "x_axis": [ 0.331, -0.571, -0.751 ], "y_axis": [ 0.436, 0.799, -0.415 ], "z_axis": [ 0.837, -0.190, 0.513 ], "quaternion": [ 0.813, -0.069, 0.489, -0.310 ] } }, { "index": 1011, "index_chain": 1011, "chain_name": "2", "nt_resnum": 1164, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1164", "linked_nts": [ "///2/1163", "///2/1165" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper", "alpha": -85.112, "beta": -154.865, "gamma": 52.381, "delta": 89.537, "epsilon": -140.432, "zeta": -103.137, "epsilon_zeta": -37.295, "bb_type": "BI", "chi": -160.540, "glyco_bond": "anti", "C5prime_xyz": [ -1.250, 8.728, 0.661 ], "P_xyz": [ 0.997, 8.951, 2.010 ], "form": ".", "ssZp": 4.160, "Dp": 4.417, "splay_angle": 24.929, "splay_distance": 4.558, "splay_ratio": 0.292, "d22": null, "d64": null, "eta": 175.971, "theta": -156.215, "eta_prime": 173.779, "theta_prime": -144.552, "eta_base": 176.943, "theta_base": -77.390, "v0": 1.454, "v1": -19.949, "v2": 29.726, "v3": -29.741, "v4": 17.836, "amplitude": 30.918, "phase_angle": 15.966, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.349, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 193.955, 193.220, 171.795 ], "x_axis": [ -0.090, -0.137, -0.986 ], "y_axis": [ 0.253, 0.955, -0.156 ], "z_axis": [ 0.963, -0.264, -0.051 ], "quaternion": [ 0.673, 0.040, 0.724, -0.145 ] } }, { "index": 1012, "index_chain": 1012, "chain_name": "2", "nt_resnum": 1165, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1165", "linked_nts": [ "///2/1164", "///2/1166" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate,splayed-apart", "alpha": -30.018, "beta": 171.400, "gamma": 36.205, "delta": 145.226, "epsilon": -94.597, "zeta": 136.456, "epsilon_zeta": 128.947, "bb_type": "BII", "chi": 71.268, "glyco_bond": "syn", "C5prime_xyz": [ -5.205, 4.415, 1.778 ], "P_xyz": [ -5.795, 1.881, 1.374 ], "form": ".", "ssZp": -0.707, "Dp": 0.793, "splay_angle": 175.989, "splay_distance": 18.642, "splay_ratio": 0.999, "d22": null, "d64": null, "eta": -154.627, "theta": 132.182, "eta_prime": -141.016, "theta_prime": 119.489, "eta_base": -87.718, "theta_base": -27.092, "v0": -22.790, "v1": 35.976, "v2": -34.709, "v3": 22.517, "v4": -0.014, "amplitude": 36.651, "phase_angle": 161.263, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.041, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 198.144, 194.799, 170.936 ], "x_axis": [ -0.522, -0.840, -0.149 ], "y_axis": [ 0.111, -0.240, 0.965 ], "z_axis": [ -0.846, 0.487, 0.218 ], "quaternion": [ -0.338, -0.353, 0.516, 0.703 ] } }, { "index": 1013, "index_chain": 1013, "chain_name": "2", "nt_resnum": 1166, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1166", "linked_nts": [ "///2/1165", "///2/1167" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,splayed-apart", "alpha": -55.641, "beta": -138.403, "gamma": 68.906, "delta": 82.020, "epsilon": -147.904, "zeta": -73.514, "epsilon_zeta": -74.390, "bb_type": "BI", "chi": -176.886, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.431, 1.513 ], "P_xyz": [ 1.059, 8.086, 2.594 ], "form": "A", "ssZp": 4.686, "Dp": 4.685, "splay_angle": 25.229, "splay_distance": 3.950, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": -77.840, "theta": -140.788, "eta_prime": -91.413, "theta_prime": -138.027, "eta_base": 68.964, "theta_base": -118.972, "v0": 5.713, "v1": -27.096, "v2": 37.039, "v3": -34.746, "v4": 18.326, "amplitude": 37.619, "phase_angle": 10.080, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.016, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 207.028, 200.690, 186.230 ], "x_axis": [ 0.791, -0.398, -0.465 ], "y_axis": [ -0.612, -0.550, -0.569 ], "z_axis": [ -0.029, 0.734, -0.678 ], "quaternion": [ -0.375, 0.869, -0.291, -0.142 ] } }, { "index": 1014, "index_chain": 1014, "chain_name": "2", "nt_resnum": 1167, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1167", "linked_nts": [ "///2/1166", "///2/1168" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -64.405, "beta": 177.114, "gamma": 55.176, "delta": 80.198, "epsilon": -152.949, "zeta": -65.541, "epsilon_zeta": -87.408, "bb_type": "BI", "chi": -169.510, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.655, 1.072 ], "P_xyz": [ 1.131, 9.073, 1.513 ], "form": ".", "ssZp": 4.609, "Dp": 4.636, "splay_angle": 22.598, "splay_distance": 4.220, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 170.872, "theta": -117.345, "eta_prime": -176.634, "theta_prime": -127.057, "eta_base": -142.037, "theta_base": -108.355, "v0": 2.966, "v1": -25.334, "v2": 36.834, "v3": -36.127, "v4": 20.913, "amplitude": 38.000, "phase_angle": 14.226, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.989, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 208.602, 204.154, 185.167 ], "x_axis": [ 0.366, -0.630, -0.685 ], "y_axis": [ -0.930, -0.271, -0.248 ], "z_axis": [ -0.029, 0.728, -0.685 ], "quaternion": [ -0.320, 0.762, -0.512, -0.234 ] } }, { "index": 1015, "index_chain": 1015, "chain_name": "2", "nt_resnum": 1168, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1168", "linked_nts": [ "///2/1167", "///2/1169" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 167.130, "beta": -173.835, "gamma": 172.037, "delta": 81.566, "epsilon": -130.147, "zeta": -61.956, "epsilon_zeta": -68.192, "bb_type": "BI", "chi": -169.137, "glyco_bond": "anti", "C5prime_xyz": [ -1.542, 8.705, 1.060 ], "P_xyz": [ -0.170, 10.555, -0.196 ], "form": ".", "ssZp": 4.529, "Dp": 4.659, "splay_angle": 36.658, "splay_distance": 5.705, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": 164.530, "theta": -148.317, "eta_prime": -178.938, "theta_prime": -139.023, "eta_base": -140.690, "theta_base": -83.032, "v0": 0.716, "v1": -22.651, "v2": 34.708, "v3": -35.259, "v4": 21.788, "amplitude": 36.393, "phase_angle": 17.500, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.747, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 211.567, 205.490, 182.478 ], "x_axis": [ -0.144, -0.735, -0.662 ], "y_axis": [ -0.978, 0.210, -0.020 ], "z_axis": [ 0.154, 0.645, -0.749 ], "quaternion": [ 0.281, -0.591, 0.725, 0.215 ] } }, { "index": 1016, "index_chain": 1016, "chain_name": "2", "nt_resnum": 1169, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1169", "linked_nts": [ "///2/1168", "///2/1170" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -62.696, "beta": 162.351, "gamma": 59.901, "delta": 80.376, "epsilon": -131.673, "zeta": 29.040, "epsilon_zeta": 199.287, "bb_type": "--", "chi": -159.063, "glyco_bond": "anti", "C5prime_xyz": [ -1.230, 8.746, 0.453 ], "P_xyz": [ 1.350, 9.002, 0.061 ], "form": ".", "ssZp": 4.351, "Dp": 4.756, "splay_angle": 22.328, "splay_distance": 3.543, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 164.363, "theta": -25.143, "eta_prime": -167.280, "theta_prime": -64.899, "eta_base": -93.392, "theta_base": -113.043, "v0": 3.738, "v1": -25.960, "v2": 37.144, "v3": -36.003, "v4": 20.342, "amplitude": 38.140, "phase_angle": 13.121, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.736, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 209.634, 205.032, 177.130 ], "x_axis": [ -0.928, -0.119, -0.352 ], "y_axis": [ -0.293, 0.817, 0.496 ], "z_axis": [ 0.229, 0.563, -0.794 ], "quaternion": [ 0.154, -0.110, 0.941, 0.282 ] } }, { "index": 1017, "index_chain": 1017, "chain_name": "2", "nt_resnum": 1170, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1170", "linked_nts": [ "///2/1169", "///2/1171" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 163.785, "beta": 151.709, "gamma": 58.990, "delta": 146.428, "epsilon": -94.084, "zeta": 157.358, "epsilon_zeta": 108.558, "bb_type": "BII", "chi": -122.259, "glyco_bond": "anti", "C5prime_xyz": [ -2.207, 8.580, -1.105 ], "P_xyz": [ 0.340, 9.168, -0.878 ], "form": ".", "ssZp": 0.715, "Dp": 0.743, "splay_angle": 43.613, "splay_distance": 7.378, "splay_ratio": 0.371, "d22": null, "d64": null, "eta": 55.014, "theta": 153.537, "eta_prime": 117.008, "theta_prime": 129.865, "eta_base": 107.662, "theta_base": 153.491, "v0": -23.989, "v1": 37.814, "v2": -36.386, "v3": 23.514, "v4": 0.071, "amplitude": 38.461, "phase_angle": 161.092, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.464, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 209.057, 206.054, 173.787 ], "x_axis": [ 0.917, -0.280, 0.285 ], "y_axis": [ 0.082, 0.830, 0.551 ], "z_axis": [ -0.391, -0.482, 0.784 ], "quaternion": [ 0.940, 0.275, -0.180, -0.096 ] } }, { "index": 1018, "index_chain": 1018, "chain_name": "2", "nt_resnum": 1171, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1171", "linked_nts": [ "///2/1170", "///2/1172" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -95.678, "beta": 78.013, "gamma": 171.142, "delta": 146.951, "epsilon": -143.861, "zeta": 148.361, "epsilon_zeta": 67.779, "bb_type": "--", "chi": -116.096, "glyco_bond": "anti", "C5prime_xyz": [ -2.119, 8.514, -1.390 ], "P_xyz": [ -2.580, 8.692, -3.971 ], "form": ".", "ssZp": 1.800, "Dp": 1.803, "splay_angle": 57.707, "splay_distance": 8.988, "splay_ratio": 0.485, "d22": null, "d64": null, "eta": -54.429, "theta": 34.473, "eta_prime": -93.648, "theta_prime": 68.919, "eta_base": -95.570, "theta_base": 101.226, "v0": -22.541, "v1": 36.708, "v2": -36.064, "v3": 23.966, "v4": -1.106, "amplitude": 37.735, "phase_angle": 162.885, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "4s", "suiteness": 0.641, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 203.033, 207.134, 169.667 ], "x_axis": [ -0.957, -0.290, 0.008 ], "y_axis": [ -0.261, 0.872, 0.415 ], "z_axis": [ -0.127, 0.395, -0.910 ], "quaternion": [ -0.035, -0.143, 0.967, 0.209 ] } }, { "index": 1019, "index_chain": 1019, "chain_name": "2", "nt_resnum": 1172, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1172", "linked_nts": [ "///2/1171", "///2/1173" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -78.886, "beta": 157.295, "gamma": 37.043, "delta": 81.987, "epsilon": -140.519, "zeta": -82.537, "epsilon_zeta": -57.981, "bb_type": "BI", "chi": 178.289, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.334, 1.790 ], "P_xyz": [ 1.021, 8.235, 2.771 ], "form": ".", "ssZp": 4.643, "Dp": 4.669, "splay_angle": 15.390, "splay_distance": 2.389, "splay_ratio": 0.137, "d22": null, "d64": null, "eta": 168.687, "theta": -145.777, "eta_prime": 157.096, "theta_prime": -143.687, "eta_base": 165.811, "theta_base": -128.586, "v0": 3.524, "v1": -24.840, "v2": 35.508, "v3": -34.468, "v4": 19.516, "amplitude": 36.471, "phase_angle": 13.194, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.749, "filter_rmsd": 0.109, "frame": { "rmsd": 0.007, "origin": [ 211.661, 209.315, 170.928 ], "x_axis": [ -0.797, -0.456, -0.396 ], "y_axis": [ -0.592, 0.720, 0.363 ], "z_axis": [ 0.119, 0.524, -0.843 ], "quaternion": [ 0.141, -0.286, 0.917, 0.242 ] } }, { "index": 1020, "index_chain": 1020, "chain_name": "2", "nt_resnum": 1173, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1173", "linked_nts": [ "///2/1172", "///2/1174" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -69.679, "beta": 169.731, "gamma": 55.041, "delta": 84.188, "epsilon": -142.917, "zeta": -66.225, "epsilon_zeta": -76.692, "bb_type": "BI", "chi": -157.991, "glyco_bond": "anti", "C5prime_xyz": [ -1.216, 8.665, 0.448 ], "P_xyz": [ 1.399, 8.860, 0.531 ], "form": ".", "ssZp": 4.333, "Dp": 4.638, "splay_angle": 27.957, "splay_distance": 4.387, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 164.124, "theta": -130.012, "eta_prime": 175.313, "theta_prime": -127.570, "eta_base": -156.418, "theta_base": -85.407, "v0": 4.121, "v1": -24.721, "v2": 34.760, "v3": -33.326, "v4": 18.468, "amplitude": 35.551, "phase_angle": 12.109, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.869, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 212.991, 209.125, 168.953 ], "x_axis": [ -0.983, 0.038, -0.181 ], "y_axis": [ -0.015, 0.959, 0.282 ], "z_axis": [ 0.185, 0.280, -0.942 ], "quaternion": [ 0.093, 0.006, 0.985, 0.143 ] } }, { "index": 1021, "index_chain": 1021, "chain_name": "2", "nt_resnum": 1174, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1174", "linked_nts": [ "///2/1173", "///2/1175" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -62.520, "beta": 163.361, "gamma": 60.394, "delta": 81.176, "epsilon": -127.426, "zeta": -88.076, "epsilon_zeta": -39.351, "bb_type": "--", "chi": -155.129, "glyco_bond": "anti", "C5prime_xyz": [ -1.319, 8.725, 0.240 ], "P_xyz": [ 1.261, 8.983, -0.176 ], "form": "A", "ssZp": 4.163, "Dp": 4.739, "splay_angle": 22.406, "splay_distance": 3.609, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 171.294, "theta": -142.027, "eta_prime": -166.878, "theta_prime": -143.431, "eta_base": -106.811, "theta_base": -125.776, "v0": 3.502, "v1": -25.280, "v2": 36.321, "v3": -35.267, "v4": 20.055, "amplitude": 37.330, "phase_angle": 13.356, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.868, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 210.821, 210.574, 165.426 ], "x_axis": [ -0.686, 0.725, 0.064 ], "y_axis": [ 0.721, 0.663, 0.201 ], "z_axis": [ 0.103, 0.184, -0.977 ], "quaternion": [ 0.011, 0.396, 0.912, 0.106 ] } }, { "index": 1022, "index_chain": 1022, "chain_name": "2", "nt_resnum": 1175, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1175", "linked_nts": [ "///2/1174", "///2/1176" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.261, "beta": 162.779, "gamma": 45.853, "delta": 78.909, "epsilon": -149.637, "zeta": -75.200, "epsilon_zeta": -74.437, "bb_type": "BI", "chi": -165.174, "glyco_bond": "anti", "C5prime_xyz": [ -1.501, 8.746, 0.805 ], "P_xyz": [ 1.061, 9.210, 1.057 ], "form": "A", "ssZp": 4.550, "Dp": 4.653, "splay_angle": 25.039, "splay_distance": 3.972, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 153.083, "theta": -148.366, "eta_prime": 164.608, "theta_prime": -147.206, "eta_base": -161.817, "theta_base": -122.898, "v0": 1.720, "v1": -24.745, "v2": 37.069, "v3": -37.081, "v4": 22.286, "amplitude": 38.580, "phase_angle": 16.087, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.599, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 209.957, 211.344, 162.007 ], "x_axis": [ -0.230, 0.680, 0.696 ], "y_axis": [ 0.968, 0.236, 0.089 ], "z_axis": [ -0.104, 0.694, -0.712 ], "quaternion": [ -0.271, 0.558, 0.738, 0.265 ] } }, { "index": 1023, "index_chain": 1023, "chain_name": "2", "nt_resnum": 1176, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1176", "linked_nts": [ "///2/1175", "///2/1177" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.149, "beta": 163.619, "gamma": 61.807, "delta": 78.647, "epsilon": -135.139, "zeta": -74.657, "epsilon_zeta": -60.482, "bb_type": "BI", "chi": -169.908, "glyco_bond": "anti", "C5prime_xyz": [ -1.597, 8.697, 1.075 ], "P_xyz": [ 0.960, 9.257, 1.057 ], "form": ".", "ssZp": 4.625, "Dp": 4.717, "splay_angle": 29.574, "splay_distance": 4.529, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 174.380, "theta": -136.558, "eta_prime": -172.566, "theta_prime": -133.919, "eta_base": -134.186, "theta_base": -88.845, "v0": 1.342, "v1": -24.445, "v2": 36.979, "v3": -37.192, "v4": 22.595, "amplitude": 38.594, "phase_angle": 16.633, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.834, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 207.817, 214.018, 159.996 ], "x_axis": [ 0.286, 0.704, 0.650 ], "y_axis": [ 0.953, -0.138, -0.271 ], "z_axis": [ -0.101, 0.697, -0.710 ], "quaternion": [ -0.331, 0.730, 0.567, 0.188 ] } }, { "index": 1024, "index_chain": 1024, "chain_name": "2", "nt_resnum": 1177, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1177", "linked_nts": [ "///2/1176", "///2/1178" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.810, "beta": 159.705, "gamma": 57.687, "delta": 80.156, "epsilon": -134.147, "zeta": -92.436, "epsilon_zeta": -41.711, "bb_type": "BI", "chi": -169.031, "glyco_bond": "anti", "C5prime_xyz": [ -1.281, 8.568, 1.061 ], "P_xyz": [ 1.326, 8.798, 0.924 ], "form": ".", "ssZp": 4.659, "Dp": 4.770, "splay_angle": 17.258, "splay_distance": 2.718, "splay_ratio": 0.152, "d22": 4.723, "d64": 4.291, "eta": 167.458, "theta": -153.600, "eta_prime": -172.653, "theta_prime": -155.029, "eta_base": -107.593, "theta_base": -164.996, "v0": 4.824, "v1": -27.086, "v2": 37.858, "v3": -36.076, "v4": 19.703, "amplitude": 38.645, "phase_angle": 11.577, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.809, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 208.448, 218.453, 159.328 ], "x_axis": [ 0.915, 0.334, 0.228 ], "y_axis": [ 0.394, -0.608, -0.689 ], "z_axis": [ -0.091, 0.721, -0.687 ], "quaternion": [ -0.394, 0.896, 0.203, 0.038 ] } }, { "index": 1025, "index_chain": 1025, "chain_name": "2", "nt_resnum": 1178, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1178", "linked_nts": [ "///2/1177", "///2/1179" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -74.235, "beta": 159.350, "gamma": 62.178, "delta": 80.573, "epsilon": -143.981, "zeta": -69.920, "epsilon_zeta": -74.061, "bb_type": "BI", "chi": -154.010, "glyco_bond": "anti", "C5prime_xyz": [ -1.415, 8.754, 0.149 ], "P_xyz": [ 1.109, 9.077, -0.484 ], "form": "A", "ssZp": 4.250, "Dp": 4.677, "splay_angle": 26.787, "splay_distance": 4.241, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 159.044, "theta": -137.327, "eta_prime": 166.882, "theta_prime": -140.180, "eta_base": 169.790, "theta_base": -108.683, "v0": 2.439, "v1": -24.819, "v2": 36.499, "v3": -36.090, "v4": 21.223, "amplitude": 37.783, "phase_angle": 14.979, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.556, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 206.594, 220.420, 159.049 ], "x_axis": [ 0.996, -0.024, 0.084 ], "y_axis": [ 0.070, -0.347, -0.935 ], "z_axis": [ 0.052, 0.937, -0.344 ], "quaternion": [ 0.571, -0.820, -0.014, -0.041 ] } }, { "index": 1026, "index_chain": 1026, "chain_name": "2", "nt_resnum": 1179, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1179", "linked_nts": [ "///2/1178", "///2/1180" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -73.129, "beta": 177.577, "gamma": 51.382, "delta": 80.252, "epsilon": -136.410, "zeta": -69.323, "epsilon_zeta": -67.087, "bb_type": "BI", "chi": -172.135, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.604, 1.224 ], "P_xyz": [ 1.110, 8.973, 1.851 ], "form": ".", "ssZp": 4.676, "Dp": 4.729, "splay_angle": 92.168, "splay_distance": 12.692, "splay_ratio": 0.720, "d22": null, "d64": null, "eta": 160.837, "theta": -117.199, "eta_prime": 173.673, "theta_prime": -160.697, "eta_base": -137.450, "theta_base": 148.044, "v0": 3.201, "v1": -25.482, "v2": 36.876, "v3": -36.057, "v4": 20.718, "amplitude": 37.989, "phase_angle": 13.903, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.930, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 209.043, 223.796, 158.280 ], "x_axis": [ 0.634, -0.721, -0.280 ], "y_axis": [ -0.625, -0.265, -0.734 ], "z_axis": [ 0.455, 0.640, -0.618 ], "quaternion": [ -0.433, 0.793, -0.424, 0.055 ] } }, { "index": 1027, "index_chain": 1027, "chain_name": "2", "nt_resnum": 1180, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1180", "linked_nts": [ "///2/1179", "///2/1181" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart", "alpha": 166.190, "beta": 145.400, "gamma": 51.227, "delta": 83.331, "epsilon": -125.477, "zeta": -83.202, "epsilon_zeta": -42.275, "bb_type": "--", "chi": -165.458, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.745, 0.854 ], "P_xyz": [ 1.247, 8.804, 0.871 ], "form": ".", "ssZp": 4.391, "Dp": 4.625, "splay_angle": 33.430, "splay_distance": 5.201, "splay_ratio": 0.290, "d22": null, "d64": null, "eta": 14.241, "theta": -127.869, "eta_prime": 41.238, "theta_prime": -124.184, "eta_base": 21.424, "theta_base": -80.257, "v0": 0.531, "v1": -21.596, "v2": 33.189, "v3": -33.846, "v4": 21.047, "amplitude": 34.854, "phase_angle": 17.785, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.896, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 201.707, 233.916, 156.075 ], "x_axis": [ -0.862, -0.420, -0.283 ], "y_axis": [ 0.503, -0.644, -0.577 ], "z_axis": [ 0.060, -0.640, 0.766 ], "quaternion": [ -0.255, -0.062, -0.336, 0.905 ] } }, { "index": 1028, "index_chain": 1028, "chain_name": "2", "nt_resnum": 1181, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1181", "linked_nts": [ "///2/1180", "///2/1182" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate", "alpha": -51.784, "beta": 150.927, "gamma": 59.334, "delta": 85.204, "epsilon": -143.989, "zeta": -76.361, "epsilon_zeta": -67.628, "bb_type": "BI", "chi": -156.437, "glyco_bond": "anti", "C5prime_xyz": [ -1.155, 8.639, 0.358 ], "P_xyz": [ 1.422, 8.548, -0.139 ], "form": ".", "ssZp": 4.300, "Dp": 4.639, "splay_angle": 27.029, "splay_distance": 4.206, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 167.708, "theta": -136.018, "eta_prime": -166.714, "theta_prime": -137.956, "eta_base": -103.339, "theta_base": -106.023, "v0": 4.978, "v1": -24.907, "v2": 34.267, "v3": -32.365, "v4": 17.323, "amplitude": 34.866, "phase_angle": 10.635, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.502, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 200.120, 229.205, 157.606 ], "x_axis": [ -0.110, -0.759, -0.642 ], "y_axis": [ 0.994, -0.081, -0.075 ], "z_axis": [ 0.005, -0.646, 0.763 ], "quaternion": [ 0.627, 0.228, 0.258, -0.699 ] } }, { "index": 1029, "index_chain": 1029, "chain_name": "2", "nt_resnum": 1182, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1182", "linked_nts": [ "///2/1181", "///2/1183" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -58.166, "beta": 161.676, "gamma": 58.183, "delta": 82.727, "epsilon": -142.343, "zeta": -58.744, "epsilon_zeta": -83.598, "bb_type": "BI", "chi": -154.714, "glyco_bond": "anti", "C5prime_xyz": [ -1.128, 8.655, 0.219 ], "P_xyz": [ 1.460, 8.718, -0.215 ], "form": ".", "ssZp": 4.271, "Dp": 4.700, "splay_angle": 49.374, "splay_distance": 7.812, "splay_ratio": 0.419, "d22": null, "d64": null, "eta": 170.898, "theta": -83.609, "eta_prime": -170.453, "theta_prime": -83.327, "eta_base": -119.591, "theta_base": -46.988, "v0": 5.281, "v1": -26.372, "v2": 36.311, "v3": -34.262, "v4": 18.318, "amplitude": 36.942, "phase_angle": 10.606, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.863, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 199.934, 225.375, 159.333 ], "x_axis": [ 0.559, -0.641, -0.526 ], "y_axis": [ 0.826, 0.377, 0.419 ], "z_axis": [ -0.070, -0.669, 0.740 ], "quaternion": [ 0.818, 0.332, 0.140, -0.448 ] } }, { "index": 1030, "index_chain": 1030, "chain_name": "2", "nt_resnum": 1183, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1183", "linked_nts": [ "///2/1182", "///2/1184" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": 147.477, "beta": -133.336, "gamma": 175.965, "delta": 81.358, "epsilon": -155.760, "zeta": -79.377, "epsilon_zeta": -76.383, "bb_type": "BI", "chi": -156.713, "glyco_bond": "anti", "C5prime_xyz": [ -1.215, 8.679, 0.317 ], "P_xyz": [ 0.068, 9.446, -1.837 ], "form": ".", "ssZp": 4.378, "Dp": 4.630, "splay_angle": 30.476, "splay_distance": 4.740, "splay_ratio": 0.263, "d22": null, "d64": null, "eta": 161.822, "theta": -171.499, "eta_prime": -150.193, "theta_prime": -177.221, "eta_base": -76.441, "theta_base": -162.613, "v0": 4.533, "v1": -26.316, "v2": 36.914, "v3": -35.321, "v4": 19.447, "amplitude": 37.723, "phase_angle": 11.889, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.450, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 206.948, 221.960, 158.914 ], "x_axis": [ 0.947, -0.058, 0.315 ], "y_axis": [ -0.278, 0.335, 0.900 ], "z_axis": [ -0.158, -0.940, 0.301 ], "quaternion": [ 0.804, 0.572, -0.147, 0.068 ] } }, { "index": 1031, "index_chain": 1031, "chain_name": "2", "nt_resnum": 1184, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1184", "linked_nts": [ "///2/1183", "///2/1185" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.130, "beta": 175.869, "gamma": 50.363, "delta": 81.707, "epsilon": -140.179, "zeta": -81.954, "epsilon_zeta": -58.225, "bb_type": "BI", "chi": 177.208, "glyco_bond": "anti", "C5prime_xyz": [ -1.642, 8.429, 1.811 ], "P_xyz": [ 0.709, 8.638, 2.955 ], "form": "A", "ssZp": 4.581, "Dp": 4.621, "splay_angle": 23.958, "splay_distance": 3.713, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 173.807, "theta": -147.518, "eta_prime": 179.203, "theta_prime": -142.830, "eta_base": -156.644, "theta_base": -117.233, "v0": 0.941, "v1": -22.605, "v2": 34.430, "v3": -34.876, "v4": 21.399, "amplitude": 36.035, "phase_angle": 17.164, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.913, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 206.397, 217.258, 158.683 ], "x_axis": [ 0.778, 0.516, 0.359 ], "y_axis": [ -0.621, 0.549, 0.559 ], "z_axis": [ 0.091, -0.658, 0.748 ], "quaternion": [ 0.877, 0.347, -0.076, 0.324 ] } }, { "index": 1032, "index_chain": 1032, "chain_name": "2", "nt_resnum": 1185, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1185", "linked_nts": [ "///2/1184", "///2/1186" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.478, "beta": 177.541, "gamma": 50.975, "delta": 82.993, "epsilon": -146.414, "zeta": -73.643, "epsilon_zeta": -72.771, "bb_type": "BI", "chi": -163.819, "glyco_bond": "anti", "C5prime_xyz": [ -1.199, 8.689, 0.779 ], "P_xyz": [ 1.360, 8.923, 1.307 ], "form": "A", "ssZp": 4.479, "Dp": 4.625, "splay_angle": 24.146, "splay_distance": 3.789, "splay_ratio": 0.209, "d22": 4.275, "d64": 4.280, "eta": 168.977, "theta": -142.071, "eta_prime": 178.964, "theta_prime": -139.474, "eta_base": -145.843, "theta_base": -109.282, "v0": 3.404, "v1": -24.383, "v2": 34.931, "v3": -33.941, "v4": 19.268, "amplitude": 35.894, "phase_angle": 13.304, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.887, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 207.973, 214.171, 160.016 ], "x_axis": [ 0.262, 0.763, 0.591 ], "y_axis": [ -0.958, 0.131, 0.255 ], "z_axis": [ 0.117, -0.633, 0.765 ], "quaternion": [ 0.735, 0.302, -0.161, 0.586 ] } }, { "index": 1033, "index_chain": 1033, "chain_name": "2", "nt_resnum": 1186, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1186", "linked_nts": [ "///2/1185", "///2/1187" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -61.684, "beta": 167.557, "gamma": 56.033, "delta": 81.440, "epsilon": -125.230, "zeta": -58.656, "epsilon_zeta": -66.573, "bb_type": "--", "chi": -161.643, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.692, 0.627 ], "P_xyz": [ 1.239, 9.036, 0.631 ], "form": ".", "ssZp": 4.382, "Dp": 4.738, "splay_angle": 41.717, "splay_distance": 6.515, "splay_ratio": 0.356, "d22": null, "d64": null, "eta": 173.427, "theta": -111.366, "eta_prime": -172.671, "theta_prime": -106.519, "eta_base": -130.000, "theta_base": -62.012, "v0": 2.931, "v1": -24.784, "v2": 36.017, "v3": -35.319, "v4": 20.425, "amplitude": 37.150, "phase_angle": 14.191, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.965, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 209.581, 212.724, 163.126 ], "x_axis": [ -0.340, 0.718, 0.608 ], "y_axis": [ -0.929, -0.358, -0.096 ], "z_axis": [ 0.149, -0.597, 0.788 ], "quaternion": [ 0.522, 0.240, -0.220, 0.788 ] } }, { "index": 1034, "index_chain": 1034, "chain_name": "2", "nt_resnum": 1187, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1187", "linked_nts": [ "///2/1186", "///2/1188" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -64.192, "beta": 174.467, "gamma": 55.379, "delta": 80.976, "epsilon": -148.298, "zeta": -83.847, "epsilon_zeta": -64.451, "bb_type": "BI", "chi": -153.235, "glyco_bond": "anti", "C5prime_xyz": [ -1.207, 8.758, 0.111 ], "P_xyz": [ 1.394, 9.064, -0.034 ], "form": ".", "ssZp": 4.243, "Dp": 4.671, "splay_angle": 72.561, "splay_distance": 11.749, "splay_ratio": 0.595, "d22": null, "d64": null, "eta": 162.158, "theta": 174.511, "eta_prime": -168.320, "theta_prime": 160.595, "eta_base": -101.620, "theta_base": 150.006, "v0": 3.897, "v1": -25.818, "v2": 36.757, "v3": -35.512, "v4": 19.926, "amplitude": 37.695, "phase_angle": 12.811, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.652, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 205.868, 213.551, 168.415 ], "x_axis": [ -0.996, 0.079, -0.051 ], "y_axis": [ -0.048, -0.895, -0.443 ], "z_axis": [ -0.080, -0.439, 0.895 ], "quaternion": [ 0.033, -0.034, -0.226, 0.973 ] } }, { "index": 1035, "index_chain": 1035, "chain_name": "2", "nt_resnum": 1188, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1188", "linked_nts": [ "///2/1187", "///2/1189" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -118.630, "beta": 86.358, "gamma": 165.734, "delta": 80.733, "epsilon": -140.118, "zeta": -70.066, "epsilon_zeta": -70.051, "bb_type": "BI", "chi": -173.490, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.497, 1.309 ], "P_xyz": [ -1.815, 10.517, -0.291 ], "form": "A", "ssZp": 4.698, "Dp": 4.723, "splay_angle": 26.986, "splay_distance": 4.074, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": -161.057, "theta": 161.382, "eta_prime": 172.184, "theta_prime": -177.674, "eta_base": 150.914, "theta_base": -125.310, "v0": 4.369, "v1": -26.341, "v2": 37.113, "v3": -35.604, "v4": 19.712, "amplitude": 37.965, "phase_angle": 12.157, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.850, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 215.900, 209.600, 173.081 ], "x_axis": [ -0.459, 0.738, 0.495 ], "y_axis": [ -0.888, -0.360, -0.287 ], "z_axis": [ -0.034, -0.571, 0.820 ], "quaternion": [ 0.500, 0.142, -0.264, 0.812 ] } }, { "index": 1036, "index_chain": 1036, "chain_name": "2", "nt_resnum": 1189, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1189", "linked_nts": [ "///2/1188", "///2/1190" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -61.779, "beta": 162.770, "gamma": 57.834, "delta": 81.205, "epsilon": -145.350, "zeta": -79.507, "epsilon_zeta": -65.843, "bb_type": "BI", "chi": -175.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.425, 1.441 ], "P_xyz": [ 1.269, 8.630, 1.584 ], "form": "A", "ssZp": 4.713, "Dp": 4.705, "splay_angle": 26.323, "splay_distance": 3.994, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 164.503, "theta": -145.845, "eta_prime": -173.952, "theta_prime": -145.667, "eta_base": -107.639, "theta_base": -123.842, "v0": 5.165, "v1": -26.933, "v2": 37.292, "v3": -35.320, "v4": 19.040, "amplitude": 37.987, "phase_angle": 10.977, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.902, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 215.086, 209.624, 177.073 ], "x_axis": [ -0.959, 0.249, 0.132 ], "y_axis": [ -0.279, -0.771, -0.572 ], "z_axis": [ -0.041, -0.586, 0.809 ], "quaternion": [ 0.141, 0.024, -0.308, 0.941 ] } }, { "index": 1037, "index_chain": 1037, "chain_name": "2", "nt_resnum": 1190, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1190", "linked_nts": [ "///2/1189", "///2/1191" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -57.360, "beta": 164.000, "gamma": 58.753, "delta": 81.681, "epsilon": -153.726, "zeta": -64.213, "epsilon_zeta": -89.513, "bb_type": "BI", "chi": -179.748, "glyco_bond": "anti", "C5prime_xyz": [ -1.552, 8.402, 1.655 ], "P_xyz": [ 1.017, 8.664, 2.115 ], "form": ".", "ssZp": 4.552, "Dp": 4.589, "splay_angle": 32.659, "splay_distance": 4.978, "splay_ratio": 0.284, "d22": null, "d64": null, "eta": 171.843, "theta": -107.362, "eta_prime": -172.865, "theta_prime": -113.863, "eta_base": -132.135, "theta_base": -61.104, "v0": 2.825, "v1": -24.605, "v2": 35.821, "v3": -35.178, "v4": 20.399, "amplitude": 36.970, "phase_angle": 14.323, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.867, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 214.979, 209.207, 181.044 ], "x_axis": [ -0.961, -0.161, -0.225 ], "y_axis": [ 0.269, -0.729, -0.629 ], "z_axis": [ -0.063, -0.665, 0.744 ], "quaternion": [ -0.116, -0.078, -0.349, 0.927 ] } }, { "index": 1038, "index_chain": 1038, "chain_name": "2", "nt_resnum": 1191, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1191", "linked_nts": [ "///2/1190", "///2/1192" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -176.039, "beta": -149.339, "gamma": 133.659, "delta": 82.153, "epsilon": -134.631, "zeta": -77.750, "epsilon_zeta": -56.881, "bb_type": "BI", "chi": -177.850, "glyco_bond": "anti", "C5prime_xyz": [ -1.308, 8.509, 1.578 ], "P_xyz": [ 1.208, 8.999, 1.044 ], "form": "A", "ssZp": 4.604, "Dp": 4.645, "splay_angle": 22.039, "splay_distance": 3.445, "splay_ratio": 0.192, "d22": 4.300, "d64": 4.021, "eta": 149.438, "theta": -140.035, "eta_prime": -179.605, "theta_prime": -142.448, "eta_base": -96.573, "theta_base": -111.875, "v0": 2.022, "v1": -23.279, "v2": 34.491, "v3": -34.306, "v4": 20.341, "amplitude": 35.785, "phase_angle": 15.454, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 211.451, 205.821, 181.974 ], "x_axis": [ -0.156, -0.686, -0.711 ], "y_axis": [ 0.981, -0.194, -0.028 ], "z_axis": [ -0.119, -0.701, 0.703 ], "quaternion": [ 0.581, 0.290, 0.254, -0.716 ] } }, { "index": 1039, "index_chain": 1039, "chain_name": "2", "nt_resnum": 1192, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1192", "linked_nts": [ "///2/1191", "///2/1193" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.621, "beta": 167.995, "gamma": 51.595, "delta": 83.121, "epsilon": -141.170, "zeta": -94.946, "epsilon_zeta": -46.224, "bb_type": "BI", "chi": -162.606, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.683, 0.701 ], "P_xyz": [ 1.225, 8.988, 1.002 ], "form": ".", "ssZp": 4.424, "Dp": 4.629, "splay_angle": 26.780, "splay_distance": 4.190, "splay_ratio": 0.232, "d22": 5.076, "d64": 5.061, "eta": 165.271, "theta": -157.183, "eta_prime": -178.401, "theta_prime": -154.742, "eta_base": -129.687, "theta_base": -140.724, "v0": 2.397, "v1": -23.417, "v2": 34.339, "v3": -33.939, "v4": 19.910, "amplitude": 35.527, "phase_angle": 14.857, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.865, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 209.858, 203.134, 183.428 ], "x_axis": [ 0.505, -0.619, -0.602 ], "y_axis": [ 0.850, 0.236, 0.470 ], "z_axis": [ -0.149, -0.749, 0.646 ], "quaternion": [ 0.772, 0.395, 0.147, -0.476 ] } }, { "index": 1040, "index_chain": 1040, "chain_name": "2", "nt_resnum": 1193, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1193", "linked_nts": [ "///2/1192", "///2/1194" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -57.863, "beta": 157.409, "gamma": 59.028, "delta": 82.019, "epsilon": -142.750, "zeta": -96.307, "epsilon_zeta": -46.443, "bb_type": "BI", "chi": -159.628, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.713, 0.504 ], "P_xyz": [ 1.219, 8.965, 0.170 ], "form": ".", "ssZp": 4.397, "Dp": 4.658, "splay_angle": 26.828, "splay_distance": 4.217, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 172.677, "theta": -159.853, "eta_prime": -178.486, "theta_prime": -151.470, "eta_base": -156.183, "theta_base": -156.028, "v0": 2.559, "v1": -24.185, "v2": 35.386, "v3": -34.891, "v4": 20.393, "amplitude": 36.581, "phase_angle": 14.685, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.550, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 207.665, 200.368, 185.686 ], "x_axis": [ 0.794, -0.465, -0.391 ], "y_axis": [ 0.586, 0.418, 0.694 ], "z_axis": [ -0.159, -0.781, 0.605 ], "quaternion": [ 0.839, 0.439, 0.069, -0.313 ] } }, { "index": 1041, "index_chain": 1041, "chain_name": "2", "nt_resnum": 1194, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1194", "linked_nts": [ "///2/1193", "///2/1195" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,A-minor", "alpha": -56.002, "beta": 171.625, "gamma": 68.994, "delta": 147.627, "epsilon": -97.078, "zeta": 107.515, "epsilon_zeta": 155.406, "bb_type": "--", "chi": -118.004, "glyco_bond": "anti", "C5prime_xyz": [ -2.026, 8.474, -1.292 ], "P_xyz": [ 0.530, 9.057, -1.147 ], "form": ".", "ssZp": 0.787, "Dp": 0.838, "splay_angle": 34.333, "splay_distance": 6.018, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": -150.011, "theta": 155.822, "eta_prime": -133.876, "theta_prime": 121.368, "eta_base": -145.426, "theta_base": 139.121, "v0": -21.258, "v1": 35.714, "v2": -35.722, "v3": 24.371, "v4": -2.167, "amplitude": 37.066, "phase_angle": 164.527, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.501, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 205.143, 197.395, 187.292 ], "x_axis": [ 0.920, -0.090, -0.382 ], "y_axis": [ 0.390, 0.317, 0.865 ], "z_axis": [ 0.044, -0.944, 0.327 ], "quaternion": [ 0.801, 0.565, 0.133, -0.150 ] } }, { "index": 1042, "index_chain": 1042, "chain_name": "2", "nt_resnum": 1195, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1195", "linked_nts": [ "///2/1194", "///2/1196" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate", "alpha": 58.310, "beta": -102.700, "gamma": -151.801, "delta": 81.314, "epsilon": -148.696, "zeta": -70.589, "epsilon_zeta": -78.107, "bb_type": "BI", "chi": -171.703, "glyco_bond": "anti", "C5prime_xyz": [ -1.639, 8.605, 1.191 ], "P_xyz": [ -1.176, 10.175, -0.862 ], "form": "A", "ssZp": 4.575, "Dp": 4.603, "splay_angle": 24.804, "splay_distance": 3.888, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": -148.602, "theta": 175.557, "eta_prime": -162.808, "theta_prime": -175.925, "eta_base": -141.337, "theta_base": -139.187, "v0": 0.772, "v1": -22.988, "v2": 35.170, "v3": -35.687, "v4": 22.047, "amplitude": 36.861, "phase_angle": 17.426, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.088, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 199.507, 199.498, 187.114 ], "x_axis": [ -0.531, -0.844, 0.083 ], "y_axis": [ 0.195, -0.027, 0.980 ], "z_axis": [ -0.825, 0.536, 0.179 ], "quaternion": [ -0.394, -0.282, 0.576, 0.659 ] } }, { "index": 1043, "index_chain": 1043, "chain_name": "2", "nt_resnum": 1196, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1196", "linked_nts": [ "///2/1195", "///2/1197" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet", "alpha": -67.189, "beta": 173.803, "gamma": 55.517, "delta": 80.011, "epsilon": -152.381, "zeta": -61.706, "epsilon_zeta": -90.675, "bb_type": "BI", "chi": -166.666, "glyco_bond": "anti", "C5prime_xyz": [ -1.434, 8.648, 0.903 ], "P_xyz": [ 1.133, 9.095, 1.179 ], "form": ".", "ssZp": 4.568, "Dp": 4.635, "splay_angle": 33.263, "splay_distance": 5.625, "splay_ratio": 0.298, "d22": null, "d64": null, "eta": 166.223, "theta": -105.639, "eta_prime": -178.311, "theta_prime": -111.368, "eta_base": -128.778, "theta_base": -76.442, "v0": 2.728, "v1": -25.196, "v2": 36.850, "v3": -36.285, "v4": 21.167, "amplitude": 38.079, "phase_angle": 14.593, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.989, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 195.746, 200.291, 186.526 ], "x_axis": [ -0.284, -0.681, 0.675 ], "y_axis": [ 0.485, 0.505, 0.714 ], "z_axis": [ -0.827, 0.530, 0.187 ], "quaternion": [ 0.593, 0.077, -0.633, -0.491 ] } }, { "index": 1044, "index_chain": 1044, "chain_name": "2", "nt_resnum": 1197, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1197", "linked_nts": [ "///2/1196", "///2/1198" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": 154.839, "beta": -155.710, "gamma": 177.122, "delta": 80.912, "epsilon": -125.789, "zeta": -85.591, "epsilon_zeta": -40.198, "bb_type": "--", "chi": 178.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.531, 8.429, 1.742 ], "P_xyz": [ 0.128, 10.224, 0.790 ], "form": "A", "ssZp": 4.725, "Dp": 4.732, "splay_angle": 25.909, "splay_distance": 4.153, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 166.047, "theta": -164.745, "eta_prime": -167.211, "theta_prime": -160.474, "eta_base": -103.117, "theta_base": -137.848, "v0": 2.640, "v1": -24.676, "v2": 36.125, "v3": -35.578, "v4": 20.784, "amplitude": 37.337, "phase_angle": 14.642, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.874, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 191.672, 198.867, 190.134 ], "x_axis": [ 0.204, -0.081, 0.976 ], "y_axis": [ 0.492, 0.870, -0.031 ], "z_axis": [ -0.846, 0.487, 0.217 ], "quaternion": [ 0.757, -0.171, -0.602, -0.189 ] } }, { "index": 1045, "index_chain": 1045, "chain_name": "2", "nt_resnum": 1198, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1198", "linked_nts": [ "///2/1197", "///2/1199" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -72.191, "beta": 178.252, "gamma": 51.263, "delta": 82.693, "epsilon": -143.758, "zeta": -83.554, "epsilon_zeta": -60.204, "bb_type": "BI", "chi": -174.717, "glyco_bond": "anti", "C5prime_xyz": [ -1.729, 8.679, 1.345 ], "P_xyz": [ 0.588, 9.153, 2.476 ], "form": "A", "ssZp": 4.403, "Dp": 4.470, "splay_angle": 20.580, "splay_distance": 3.268, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 162.157, "theta": -150.940, "eta_prime": 171.378, "theta_prime": -146.911, "eta_base": -158.727, "theta_base": -123.301, "v0": -2.744, "v1": -18.738, "v2": 31.749, "v3": -34.260, "v4": 23.360, "amplitude": 34.510, "phase_angle": 23.074, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.634, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 187.751, 198.667, 191.485 ], "x_axis": [ 0.829, 0.093, 0.551 ], "y_axis": [ 0.327, 0.718, -0.614 ], "z_axis": [ -0.453, 0.690, 0.565 ], "quaternion": [ 0.882, -0.369, -0.284, -0.067 ] } }, { "index": 1046, "index_chain": 1046, "chain_name": "2", "nt_resnum": 1199, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1199", "linked_nts": [ "///2/1198", "///2/1200" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,phosphate", "alpha": -64.602, "beta": 172.098, "gamma": 52.216, "delta": 86.998, "epsilon": -151.747, "zeta": -72.130, "epsilon_zeta": -79.617, "bb_type": "BI", "chi": -159.655, "glyco_bond": "anti", "C5prime_xyz": [ -1.402, 8.764, 0.559 ], "P_xyz": [ 1.119, 9.106, 1.219 ], "form": ".", "ssZp": 4.104, "Dp": 4.324, "splay_angle": 17.391, "splay_distance": 2.806, "splay_ratio": 0.156, "d22": null, "d64": null, "eta": 168.683, "theta": -140.811, "eta_prime": -179.861, "theta_prime": -139.197, "eta_base": -147.537, "theta_base": -98.343, "v0": -1.432, "v1": -17.753, "v2": 28.982, "v3": -30.659, "v4": 20.271, "amplitude": 31.087, "phase_angle": 21.207, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.821, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 185.802, 199.494, 193.975 ], "x_axis": [ 0.926, 0.377, 0.035 ], "y_axis": [ -0.208, 0.585, -0.784 ], "z_axis": [ -0.316, 0.718, 0.620 ], "quaternion": [ 0.885, -0.425, -0.099, 0.165 ] } }, { "index": 1047, "index_chain": 1047, "chain_name": "2", "nt_resnum": 1200, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1200", "linked_nts": [ "///2/1199", "///2/1201" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,bulge,A-minor,phosphate", "alpha": -72.845, "beta": -175.179, "gamma": 45.842, "delta": 88.237, "epsilon": 175.049, "zeta": -89.097, "epsilon_zeta": -95.854, "bb_type": "BI", "chi": -131.495, "glyco_bond": "anti", "C5prime_xyz": [ -0.987, 8.384, -1.042 ], "P_xyz": [ 1.644, 8.473, -0.971 ], "form": ".", "ssZp": 3.426, "Dp": 4.244, "splay_angle": 31.921, "splay_distance": 5.220, "splay_ratio": 0.275, "d22": null, "d64": null, "eta": 159.883, "theta": -157.783, "eta_prime": 178.403, "theta_prime": -169.392, "eta_base": -127.082, "theta_base": 170.410, "v0": 8.728, "v1": -26.316, "v2": 32.984, "v3": -28.895, "v4": 12.795, "amplitude": 33.055, "phase_angle": 3.746, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.726, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 185.534, 201.809, 195.537 ], "x_axis": [ 0.549, 0.643, -0.534 ], "y_axis": [ -0.834, 0.375, -0.405 ], "z_axis": [ -0.060, 0.668, 0.742 ], "quaternion": [ 0.816, -0.329, 0.145, 0.452 ] } }, { "index": 1048, "index_chain": 1048, "chain_name": "2", "nt_resnum": 1201, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1201", "linked_nts": [ "///2/1200", "///2/1202" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,bulge", "alpha": -174.354, "beta": -161.109, "gamma": 136.865, "delta": 82.491, "epsilon": -105.354, "zeta": -128.674, "epsilon_zeta": 23.320, "bb_type": "--", "chi": -155.584, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.765, 0.282 ], "P_xyz": [ 0.737, 9.440, -1.089 ], "form": ".", "ssZp": 3.856, "Dp": 4.631, "splay_angle": 24.365, "splay_distance": 4.006, "splay_ratio": 0.221, "d22": 5.035, "d64": 4.340, "eta": 163.498, "theta": -173.585, "eta_prime": 161.577, "theta_prime": -168.418, "eta_base": 150.695, "theta_base": -149.761, "v0": 1.065, "v1": -22.244, "v2": 33.774, "v3": -34.138, "v4": 20.859, "amplitude": 35.309, "phase_angle": 16.954, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 183.901, 200.752, 200.381 ], "x_axis": [ 0.609, 0.482, -0.630 ], "y_axis": [ -0.770, 0.549, -0.324 ], "z_axis": [ 0.190, 0.683, 0.706 ], "quaternion": [ 0.846, -0.298, 0.242, 0.370 ] } }, { "index": 1049, "index_chain": 1049, "chain_name": "2", "nt_resnum": 1202, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1202", "linked_nts": [ "///2/1201", "///2/1203" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -49.633, "beta": 122.033, "gamma": 56.059, "delta": 79.081, "epsilon": -92.042, "zeta": -141.633, "epsilon_zeta": 49.590, "bb_type": "--", "chi": -149.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.756, -0.097 ], "P_xyz": [ 0.957, 8.331, -1.173 ], "form": ".", "ssZp": 3.434, "Dp": 4.735, "splay_angle": 30.018, "splay_distance": 4.973, "splay_ratio": 0.259, "d22": 4.031, "d64": 3.917, "eta": 175.923, "theta": -111.022, "eta_prime": -178.957, "theta_prime": -126.617, "eta_base": -160.586, "theta_base": -135.451, "v0": 2.966, "v1": -25.679, "v2": 37.410, "v3": -36.718, "v4": 21.268, "amplitude": 38.606, "phase_angle": 14.297, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.220, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 184.112, 203.341, 203.432 ], "x_axis": [ 0.283, 0.578, -0.765 ], "y_axis": [ -0.896, 0.444, 0.005 ], "z_axis": [ 0.343, 0.684, 0.644 ], "quaternion": [ 0.770, -0.221, 0.360, 0.479 ] } }, { "index": 1050, "index_chain": 1050, "chain_name": "2", "nt_resnum": 1203, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1203", "linked_nts": [ "///2/1202", "///2/1204" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop", "alpha": 135.217, "beta": -120.228, "gamma": 159.575, "delta": 88.292, "epsilon": -175.412, "zeta": -53.610, "epsilon_zeta": -121.803, "bb_type": "BI", "chi": 175.956, "glyco_bond": "anti", "C5prime_xyz": [ -2.435, 8.694, 1.447 ], "P_xyz": [ 0.077, 9.390, 1.125 ], "form": ".", "ssZp": 2.806, "Dp": 3.546, "splay_angle": 27.481, "splay_distance": 4.185, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 127.876, "theta": -110.699, "eta_prime": 160.509, "theta_prime": -122.499, "eta_base": 171.927, "theta_base": -63.727, "v0": -16.310, "v1": -2.567, "v2": 18.897, "v3": -28.798, "v4": 28.449, "amplitude": 29.818, "phase_angle": 50.674, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.109, "frame": { "rmsd": 0.013, "origin": [ 186.067, 207.176, 205.922 ], "x_axis": [ -0.202, -0.705, -0.680 ], "y_axis": [ -0.973, 0.068, 0.219 ], "z_axis": [ -0.108, 0.706, -0.700 ], "quaternion": [ 0.204, -0.598, 0.702, 0.329 ] } }, { "index": 1051, "index_chain": 1051, "chain_name": "2", "nt_resnum": 1204, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1204", "linked_nts": [ "///2/1203", "///2/1205" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -146.719, "beta": -106.750, "gamma": 63.773, "delta": 88.072, "epsilon": -121.733, "zeta": -144.182, "epsilon_zeta": 22.449, "bb_type": "--", "chi": -95.303, "glyco_bond": "anti", "C5prime_xyz": [ -1.757, 7.391, -2.819 ], "P_xyz": [ 0.863, 7.448, -2.498 ], "form": ".", "ssZp": 0.153, "Dp": 4.728, "splay_angle": 28.700, "splay_distance": 5.169, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 161.332, "theta": -156.741, "eta_prime": -179.723, "theta_prime": -147.137, "eta_base": -111.514, "theta_base": -117.229, "v0": 8.838, "v1": -26.789, "v2": 33.695, "v3": -29.450, "v4": 13.103, "amplitude": 33.771, "phase_angle": 3.821, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 183.421, 209.287, 203.461 ], "x_axis": [ -0.978, -0.190, -0.088 ], "y_axis": [ -0.207, 0.821, 0.532 ], "z_axis": [ -0.029, 0.538, -0.842 ], "quaternion": [ 0.015, -0.104, 0.954, 0.281 ] } }, { "index": 1052, "index_chain": 1052, "chain_name": "2", "nt_resnum": 1205, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1205", "linked_nts": [ "///2/1204", "///2/1206" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop", "alpha": -19.853, "beta": 106.645, "gamma": 49.955, "delta": 80.483, "epsilon": -106.158, "zeta": -53.830, "epsilon_zeta": -52.328, "bb_type": "--", "chi": -101.109, "glyco_bond": "anti", "C5prime_xyz": [ -1.979, 7.792, -2.650 ], "P_xyz": [ -0.180, 6.205, -3.685 ], "form": ".", "ssZp": 0.129, "Dp": 4.762, "splay_angle": 25.259, "splay_distance": 4.336, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": -175.098, "theta": -112.718, "eta_prime": -167.892, "theta_prime": -140.404, "eta_base": -148.879, "theta_base": -152.939, "v0": 3.620, "v1": -25.585, "v2": 36.675, "v3": -35.533, "v4": 20.166, "amplitude": 37.672, "phase_angle": 13.209, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 181.295, 213.960, 202.864 ], "x_axis": [ -0.985, -0.006, 0.171 ], "y_axis": [ 0.071, 0.896, 0.439 ], "z_axis": [ -0.156, 0.444, -0.882 ], "quaternion": [ -0.084, 0.017, 0.970, 0.228 ] } }, { "index": 1053, "index_chain": 1053, "chain_name": "2", "nt_resnum": 1206, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1206", "linked_nts": [ "///2/1205", "///2/1207" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-donor,splayed-apart", "alpha": -93.018, "beta": 64.050, "gamma": -178.476, "delta": 78.690, "epsilon": -104.762, "zeta": -94.879, "epsilon_zeta": -9.883, "bb_type": "--", "chi": -71.979, "glyco_bond": "--", "C5prime_xyz": [ -3.411, 6.631, -3.252 ], "P_xyz": [ -6.013, 6.318, -3.425 ], "form": ".", "ssZp": -2.166, "Dp": 4.587, "splay_angle": 114.500, "splay_distance": 15.696, "splay_ratio": 0.843, "d22": null, "d64": null, "eta": -166.543, "theta": 148.041, "eta_prime": -177.639, "theta_prime": 126.114, "eta_base": -176.586, "theta_base": 80.246, "v0": -4.566, "v1": -19.162, "v2": 34.184, "v3": -37.807, "v4": 26.761, "amplitude": 37.844, "phase_angle": 25.407, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.010, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 179.507, 217.176, 200.571 ], "x_axis": [ -0.789, 0.091, -0.607 ], "y_axis": [ 0.102, 0.995, 0.016 ], "z_axis": [ 0.605, -0.049, -0.794 ], "quaternion": [ 0.321, 0.051, 0.946, -0.009 ] } }, { "index": 1054, "index_chain": 1054, "chain_name": "2", "nt_resnum": 1207, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1207", "linked_nts": [ "///2/1206", "///2/1208" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -167.749, "beta": 122.480, "gamma": 41.944, "delta": 81.582, "epsilon": -111.001, "zeta": 124.589, "epsilon_zeta": 124.409, "bb_type": "--", "chi": -152.042, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.790, 0.054 ], "P_xyz": [ 1.235, 8.299, -0.370 ], "form": ".", "ssZp": 3.827, "Dp": 4.733, "splay_angle": 125.584, "splay_distance": 18.294, "splay_ratio": 0.890, "d22": null, "d64": null, "eta": 33.254, "theta": 71.542, "eta_prime": 62.856, "theta_prime": 23.463, "eta_base": 78.306, "theta_base": -38.964, "v0": 2.402, "v1": -24.151, "v2": 35.503, "v3": -35.094, "v4": 20.640, "amplitude": 36.747, "phase_angle": 14.953, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.052, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 188.150, 230.212, 201.891 ], "x_axis": [ 0.303, -0.843, 0.445 ], "y_axis": [ -0.952, -0.293, 0.092 ], "z_axis": [ 0.053, -0.451, -0.891 ], "quaternion": [ 0.172, 0.788, -0.569, 0.158 ] } }, { "index": 1055, "index_chain": 1055, "chain_name": "2", "nt_resnum": 1208, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1208", "linked_nts": [ "///2/1207", "///2/1209" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate,splayed-apart", "alpha": -118.867, "beta": -129.448, "gamma": -126.854, "delta": 81.194, "epsilon": -156.070, "zeta": -74.088, "epsilon_zeta": -81.982, "bb_type": "BI", "chi": -159.212, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.710, 0.470 ], "P_xyz": [ -1.243, 10.839, -1.062 ], "form": "A", "ssZp": 4.410, "Dp": 4.596, "splay_angle": 25.637, "splay_distance": 3.993, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 38.474, "theta": 157.343, "eta_prime": 67.415, "theta_prime": 172.325, "eta_base": 135.249, "theta_base": -156.952, "v0": 3.037, "v1": -25.016, "v2": 36.255, "v3": -35.475, "v4": 20.465, "amplitude": 37.370, "phase_angle": 14.033, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 173.909, 218.762, 200.999 ], "x_axis": [ 0.425, -0.141, 0.894 ], "y_axis": [ 0.498, 0.861, -0.101 ], "z_axis": [ -0.756, 0.489, 0.436 ], "quaternion": [ 0.825, -0.179, -0.500, -0.194 ] } }, { "index": 1056, "index_chain": 1056, "chain_name": "2", "nt_resnum": 1209, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1209", "linked_nts": [ "///2/1208", "///2/1210" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -63.154, "beta": 168.127, "gamma": 58.983, "delta": 80.467, "epsilon": -139.044, "zeta": -75.533, "epsilon_zeta": -63.511, "bb_type": "BI", "chi": -168.244, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.609, 1.005 ], "P_xyz": [ 1.199, 8.969, 1.100 ], "form": "A", "ssZp": 4.606, "Dp": 4.712, "splay_angle": 23.630, "splay_distance": 3.722, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 173.066, "theta": -139.296, "eta_prime": -175.114, "theta_prime": -137.854, "eta_base": -139.814, "theta_base": -103.246, "v0": 3.312, "v1": -25.502, "v2": 36.814, "v3": -35.891, "v4": 20.545, "amplitude": 37.893, "phase_angle": 13.701, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.911, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 170.597, 219.352, 203.150 ], "x_axis": [ 0.658, 0.259, 0.707 ], "y_axis": [ 0.260, 0.803, -0.536 ], "z_axis": [ -0.707, 0.537, 0.461 ], "quaternion": [ 0.855, -0.314, -0.413, -0.000 ] } }, { "index": 1057, "index_chain": 1057, "chain_name": "2", "nt_resnum": 1210, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1210", "linked_nts": [ "///2/1209", "///2/1211" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -59.776, "beta": 160.853, "gamma": 60.147, "delta": 80.305, "epsilon": -161.839, "zeta": -77.206, "epsilon_zeta": -84.633, "bb_type": "BI", "chi": -165.182, "glyco_bond": "anti", "C5prime_xyz": [ -1.463, 8.746, 0.815 ], "P_xyz": [ 1.119, 9.173, 0.678 ], "form": ".", "ssZp": 4.488, "Dp": 4.540, "splay_angle": 22.219, "splay_distance": 3.914, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 165.348, "theta": -130.577, "eta_prime": -173.942, "theta_prime": -143.665, "eta_base": -118.843, "theta_base": -134.579, "v0": 1.466, "v1": -23.859, "v2": 35.935, "v3": -36.074, "v4": 21.830, "amplitude": 37.461, "phase_angle": 16.414, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.839, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 169.422, 220.710, 206.409 ], "x_axis": [ 0.696, 0.688, 0.203 ], "y_axis": [ -0.275, 0.517, -0.810 ], "z_axis": [ -0.663, 0.509, 0.550 ], "quaternion": [ 0.831, -0.397, -0.260, 0.290 ] } }, { "index": 1058, "index_chain": 1058, "chain_name": "2", "nt_resnum": 1211, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1211", "linked_nts": [ "///2/1210", "///2/1212" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 166.262, "beta": -166.804, "gamma": 166.218, "delta": 82.298, "epsilon": -136.487, "zeta": -78.758, "epsilon_zeta": -57.729, "bb_type": "BI", "chi": 179.645, "glyco_bond": "anti", "C5prime_xyz": [ -1.466, 8.446, 1.704 ], "P_xyz": [ 0.370, 10.133, 0.890 ], "form": "A", "ssZp": 4.634, "Dp": 4.659, "splay_angle": 21.638, "splay_distance": 3.490, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 161.734, "theta": -163.202, "eta_prime": 174.153, "theta_prime": -159.664, "eta_base": -156.441, "theta_base": -133.747, "v0": 2.326, "v1": -23.603, "v2": 34.711, "v3": -34.355, "v4": 20.206, "amplitude": 35.936, "phase_angle": 15.004, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.631, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 168.579, 221.178, 210.203 ], "x_axis": [ 0.627, 0.729, -0.275 ], "y_axis": [ -0.594, 0.219, -0.774 ], "z_axis": [ -0.504, 0.648, 0.571 ], "quaternion": [ 0.777, -0.457, -0.074, 0.426 ] } }, { "index": 1059, "index_chain": 1059, "chain_name": "2", "nt_resnum": 1212, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1212", "linked_nts": [ "///2/1211", "///2/1213" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -60.710, "beta": 174.296, "gamma": 47.303, "delta": 81.653, "epsilon": -154.221, "zeta": -78.546, "epsilon_zeta": -75.676, "bb_type": "BI", "chi": -161.682, "glyco_bond": "anti", "C5prime_xyz": [ -1.477, 8.800, 0.637 ], "P_xyz": [ 1.021, 9.324, 1.226 ], "form": "A", "ssZp": 4.372, "Dp": 4.519, "splay_angle": 23.799, "splay_distance": 3.769, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 165.004, "theta": -153.723, "eta_prime": 178.604, "theta_prime": -151.544, "eta_base": -144.567, "theta_base": -126.320, "v0": 0.338, "v1": -22.179, "v2": 34.299, "v3": -35.069, "v4": 21.917, "amplitude": 36.081, "phase_angle": 18.084, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.854, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 168.627, 222.990, 213.185 ], "x_axis": [ 0.232, 0.649, -0.724 ], "y_axis": [ -0.878, -0.180, -0.443 ], "z_axis": [ -0.418, 0.739, 0.528 ], "quaternion": [ 0.629, -0.470, 0.122, 0.607 ] } }, { "index": 1060, "index_chain": 1060, "chain_name": "2", "nt_resnum": 1213, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1213", "linked_nts": [ "///2/1212", "///2/1214" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -56.533, "beta": 169.618, "gamma": 52.071, "delta": 82.202, "epsilon": -151.221, "zeta": -84.473, "epsilon_zeta": -66.748, "bb_type": "BI", "chi": -159.672, "glyco_bond": "anti", "C5prime_xyz": [ -1.229, 8.798, 0.527 ], "P_xyz": [ 1.359, 9.091, 0.839 ], "form": "A", "ssZp": 4.326, "Dp": 4.538, "splay_angle": 23.569, "splay_distance": 3.721, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 173.580, "theta": -155.023, "eta_prime": -175.042, "theta_prime": -154.873, "eta_base": -139.796, "theta_base": -138.435, "v0": 1.035, "v1": -22.472, "v2": 34.171, "v3": -34.518, "v4": 21.141, "amplitude": 35.733, "phase_angle": 16.999, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.897, "filter_rmsd": 0.067, "frame": { "rmsd": 0.005, "origin": [ 168.372, 225.953, 215.501 ], "x_axis": [ -0.234, 0.428, -0.873 ], "y_axis": [ -0.876, -0.483, -0.002 ], "z_axis": [ -0.422, 0.764, 0.488 ], "quaternion": [ 0.439, -0.436, 0.257, 0.742 ] } }, { "index": 1061, "index_chain": 1061, "chain_name": "2", "nt_resnum": 1214, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1214", "linked_nts": [ "///2/1213", "///2/1215" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,splayed-apart", "alpha": -54.423, "beta": 165.872, "gamma": 46.681, "delta": 81.174, "epsilon": -101.606, "zeta": -110.467, "epsilon_zeta": 8.861, "bb_type": "--", "chi": -160.921, "glyco_bond": "anti", "C5prime_xyz": [ -1.254, 8.678, 0.584 ], "P_xyz": [ 1.345, 8.945, 0.775 ], "form": ".", "ssZp": 4.121, "Dp": 4.756, "splay_angle": 88.053, "splay_distance": 13.934, "splay_ratio": 0.696, "d22": null, "d64": null, "eta": -179.394, "theta": -140.504, "eta_prime": -174.603, "theta_prime": -145.156, "eta_base": -153.012, "theta_base": -134.745, "v0": 3.432, "v1": -25.350, "v2": 36.444, "v3": -35.460, "v4": 20.211, "amplitude": 37.476, "phase_angle": 13.481, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.767, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 168.127, 228.954, 217.686 ], "x_axis": [ -0.551, 0.131, -0.824 ], "y_axis": [ -0.705, -0.602, 0.375 ], "z_axis": [ -0.447, 0.787, 0.424 ], "quaternion": [ 0.260, -0.396, 0.362, 0.803 ] } }, { "index": 1062, "index_chain": 1062, "chain_name": "2", "nt_resnum": 1215, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1215", "linked_nts": [ "///2/1214", "///2/1216" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": -50.651, "beta": 129.574, "gamma": -171.197, "delta": 146.038, "epsilon": -87.943, "zeta": -152.691, "epsilon_zeta": 64.748, "bb_type": "BII", "chi": -111.215, "glyco_bond": "anti", "C5prime_xyz": [ -2.002, 8.389, -1.653 ], "P_xyz": [ -2.057, 9.615, -3.968 ], "form": ".", "ssZp": 0.572, "Dp": 0.714, "splay_angle": 166.734, "splay_distance": 18.869, "splay_ratio": 0.993, "d22": 11.088, "d64": 14.189, "eta": -14.437, "theta": -161.574, "eta_prime": -28.288, "theta_prime": -150.040, "eta_base": -55.784, "theta_base": -143.650, "v0": -21.422, "v1": 35.201, "v2": -34.818, "v3": 23.347, "v4": -1.406, "amplitude": 36.326, "phase_angle": 163.437, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 161.118, 237.404, 226.268 ], "x_axis": [ -0.829, 0.042, 0.558 ], "y_axis": [ 0.119, -0.961, 0.248 ], "z_axis": [ 0.547, 0.272, 0.792 ], "quaternion": [ -0.020, 0.292, 0.137, 0.946 ] } }, { "index": 1063, "index_chain": 1063, "chain_name": "2", "nt_resnum": 1216, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1216", "linked_nts": [ "///2/1215", "///2/1217" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 40.143, "beta": 137.838, "gamma": 46.078, "delta": 81.496, "epsilon": -141.086, "zeta": 97.275, "epsilon_zeta": 121.639, "bb_type": "--", "chi": -160.581, "glyco_bond": "anti", "C5prime_xyz": [ -1.294, 8.766, 0.563 ], "P_xyz": [ 1.314, 8.648, 0.342 ], "form": ".", "ssZp": 4.413, "Dp": 4.659, "splay_angle": 94.857, "splay_distance": 15.216, "splay_ratio": 0.741, "d22": null, "d64": null, "eta": -115.893, "theta": 21.768, "eta_prime": -89.829, "theta_prime": -17.373, "eta_base": -67.714, "theta_base": -36.988, "v0": 1.883, "v1": -23.659, "v2": 35.197, "v3": -35.121, "v4": 20.977, "amplitude": 36.570, "phase_angle": 15.752, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.102, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 173.393, 223.077, 226.572 ], "x_axis": [ -0.680, -0.548, -0.487 ], "y_axis": [ -0.626, 0.780, -0.004 ], "z_axis": [ 0.382, 0.303, -0.873 ], "quaternion": [ 0.238, -0.322, 0.913, 0.082 ] } }, { "index": 1064, "index_chain": 1064, "chain_name": "2", "nt_resnum": 1217, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1217", "linked_nts": [ "///2/1216", "///2/1218" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,internal-loop,phosphate,splayed-apart", "alpha": -93.225, "beta": -135.575, "gamma": -87.786, "delta": 82.044, "epsilon": -157.021, "zeta": -73.467, "epsilon_zeta": -83.554, "bb_type": "BI", "chi": -166.135, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.697, 0.894 ], "P_xyz": [ -1.629, 11.311, 0.839 ], "form": "A", "ssZp": 4.440, "Dp": 4.513, "splay_angle": 24.108, "splay_distance": 3.752, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 78.821, "theta": 153.262, "eta_prime": 109.164, "theta_prime": 172.171, "eta_base": 159.792, "theta_base": -147.126, "v0": 1.008, "v1": -22.628, "v2": 34.343, "v3": -34.729, "v4": 21.303, "amplitude": 35.920, "phase_angle": 17.040, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 162.178, 229.905, 218.882 ], "x_axis": [ -0.374, -0.661, 0.651 ], "y_axis": [ 0.863, 0.010, 0.506 ], "z_axis": [ -0.341, 0.751, 0.566 ], "quaternion": [ 0.548, -0.112, -0.452, -0.695 ] } }, { "index": 1065, "index_chain": 1065, "chain_name": "2", "nt_resnum": 1218, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1218", "linked_nts": [ "///2/1217", "///2/1219" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -64.774, "beta": 170.892, "gamma": 59.396, "delta": 82.731, "epsilon": -152.882, "zeta": -78.620, "epsilon_zeta": -74.262, "bb_type": "BI", "chi": -164.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.170, 8.722, 0.803 ], "P_xyz": [ 1.440, 8.918, 1.028 ], "form": "A", "ssZp": 4.438, "Dp": 4.557, "splay_angle": 25.858, "splay_distance": 4.052, "splay_ratio": 0.224, "d22": 4.584, "d64": 4.856, "eta": 172.619, "theta": -149.934, "eta_prime": -173.464, "theta_prime": -149.663, "eta_base": -132.248, "theta_base": -129.546, "v0": 2.328, "v1": -23.500, "v2": 34.563, "v3": -34.146, "v4": 20.082, "amplitude": 35.774, "phase_angle": 14.948, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.068, "frame": { "rmsd": 0.006, "origin": [ 159.667, 232.273, 220.354 ], "x_axis": [ 0.152, -0.506, 0.849 ], "y_axis": [ 0.930, 0.365, 0.051 ], "z_axis": [ -0.336, 0.782, 0.525 ], "quaternion": [ 0.715, -0.256, -0.415, -0.502 ] } }, { "index": 1066, "index_chain": 1066, "chain_name": "2", "nt_resnum": 1219, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1219", "linked_nts": [ "///2/1218", "///2/1220" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -57.343, "beta": 164.264, "gamma": 58.806, "delta": 83.233, "epsilon": -122.980, "zeta": -67.253, "epsilon_zeta": -55.728, "bb_type": "--", "chi": -166.377, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.719, 0.910 ], "P_xyz": [ 1.242, 8.979, 1.084 ], "form": ".", "ssZp": 4.412, "Dp": 4.647, "splay_angle": 33.853, "splay_distance": 5.330, "splay_ratio": 0.291, "d22": null, "d64": null, "eta": -178.877, "theta": -115.277, "eta_prime": -167.931, "theta_prime": -114.561, "eta_base": -137.493, "theta_base": -70.541, "v0": 1.194, "v1": -22.325, "v2": 33.771, "v3": -34.025, "v4": 20.718, "amplitude": 35.262, "phase_angle": 16.721, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.867, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 157.032, 234.741, 222.191 ], "x_axis": [ 0.555, -0.254, 0.792 ], "y_axis": [ 0.770, 0.516, -0.374 ], "z_axis": [ -0.314, 0.818, 0.483 ], "quaternion": [ 0.799, -0.373, -0.346, -0.321 ] } }, { "index": 1067, "index_chain": 1067, "chain_name": "2", "nt_resnum": 1220, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1220", "linked_nts": [ "///2/1219", "///2/1221" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -70.033, "beta": -174.489, "gamma": 38.906, "delta": 85.407, "epsilon": -154.084, "zeta": -72.238, "epsilon_zeta": -81.846, "bb_type": "BI", "chi": -167.742, "glyco_bond": "anti", "C5prime_xyz": [ -1.146, 8.531, 1.073 ], "P_xyz": [ 1.160, 8.645, 2.324 ], "form": ".", "ssZp": 4.441, "Dp": 4.525, "splay_angle": 21.161, "splay_distance": 3.825, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 150.739, "theta": -116.114, "eta_prime": 172.628, "theta_prime": -123.602, "eta_base": -123.682, "theta_base": -101.695, "v0": 4.305, "v1": -23.822, "v2": 33.228, "v3": -31.719, "v4": 17.323, "amplitude": 33.915, "phase_angle": 11.559, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.445, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 159.073, 237.558, 226.229 ], "x_axis": [ 0.876, -0.344, -0.339 ], "y_axis": [ -0.159, 0.458, -0.874 ], "z_axis": [ 0.456, 0.820, 0.347 ], "quaternion": [ 0.819, -0.517, 0.243, -0.056 ] } }, { "index": 1068, "index_chain": 1068, "chain_name": "2", "nt_resnum": 1221, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1221", "linked_nts": [ "///2/1220", "///2/1222" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 150.783, "beta": -160.110, "gamma": 177.117, "delta": 81.683, "epsilon": -133.638, "zeta": -95.252, "epsilon_zeta": -38.386, "bb_type": "BI", "chi": -177.518, "glyco_bond": "anti", "C5prime_xyz": [ -1.565, 8.537, 1.534 ], "P_xyz": [ 0.041, 10.344, 0.532 ], "form": "A", "ssZp": 4.613, "Dp": 4.652, "splay_angle": 22.544, "splay_distance": 3.467, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 160.047, "theta": -178.186, "eta_prime": 179.528, "theta_prime": -172.055, "eta_base": -137.432, "theta_base": -143.159, "v0": 1.125, "v1": -22.886, "v2": 34.706, "v3": -35.080, "v4": 21.421, "amplitude": 36.276, "phase_angle": 16.918, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.880, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 162.016, 238.377, 228.531 ], "x_axis": [ 0.653, -0.110, -0.749 ], "y_axis": [ -0.521, 0.653, -0.550 ], "z_axis": [ 0.549, 0.750, 0.369 ], "quaternion": [ 0.818, -0.397, 0.397, 0.126 ] } }, { "index": 1069, "index_chain": 1069, "chain_name": "2", "nt_resnum": 1222, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1222", "linked_nts": [ "///2/1221", "///2/1223" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -48.073, "beta": 161.533, "gamma": 40.525, "delta": 80.972, "epsilon": -140.262, "zeta": -86.463, "epsilon_zeta": -53.800, "bb_type": "BI", "chi": -162.431, "glyco_bond": "anti", "C5prime_xyz": [ -1.106, 8.659, 0.683 ], "P_xyz": [ 1.499, 8.745, 0.944 ], "form": "A", "ssZp": 4.495, "Dp": 4.726, "splay_angle": 26.051, "splay_distance": 4.009, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 167.077, "theta": -146.623, "eta_prime": 175.777, "theta_prime": -143.411, "eta_base": -149.153, "theta_base": -118.257, "v0": 5.474, "v1": -27.150, "v2": 37.418, "v3": -35.276, "v4": 18.787, "amplitude": 38.061, "phase_angle": 10.546, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.379, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 164.476, 239.774, 230.535 ], "x_axis": [ 0.238, 0.257, -0.937 ], "y_axis": [ -0.759, 0.650, -0.015 ], "z_axis": [ 0.605, 0.715, 0.350 ], "quaternion": [ 0.748, -0.244, 0.515, 0.340 ] } }, { "index": 1070, "index_chain": 1070, "chain_name": "2", "nt_resnum": 1223, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1223", "linked_nts": [ "///2/1222", "///2/1224" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-acceptor,phosphate", "alpha": -46.162, "beta": 155.840, "gamma": 52.555, "delta": 79.472, "epsilon": -113.094, "zeta": -85.878, "epsilon_zeta": -27.216, "bb_type": "--", "chi": -165.553, "glyco_bond": "anti", "C5prime_xyz": [ -1.253, 8.632, 0.839 ], "P_xyz": [ 1.354, 8.815, 0.667 ], "form": ".", "ssZp": 4.446, "Dp": 4.815, "splay_angle": 25.124, "splay_distance": 4.891, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 179.702, "theta": -105.780, "eta_prime": -169.465, "theta_prime": -115.938, "eta_base": -134.351, "theta_base": -113.937, "v0": 4.320, "v1": -26.823, "v2": 38.001, "v3": -36.519, "v4": 20.292, "amplitude": 38.905, "phase_angle": 12.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.569, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 167.760, 242.036, 230.949 ], "x_axis": [ -0.219, 0.524, -0.823 ], "y_axis": [ -0.763, 0.434, 0.479 ], "z_axis": [ 0.608, 0.733, 0.304 ], "quaternion": [ 0.616, -0.103, 0.581, 0.522 ] } }, { "index": 1071, "index_chain": 1071, "chain_name": "2", "nt_resnum": 1224, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1224", "linked_nts": [ "///2/1223", "///2/1225" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor", "alpha": 81.973, "beta": -120.181, "gamma": -110.211, "delta": 80.520, "epsilon": -144.255, "zeta": -76.230, "epsilon_zeta": -68.026, "bb_type": "BI", "chi": 179.659, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.439, 1.682 ], "P_xyz": [ -1.763, 11.011, 1.194 ], "form": "A", "ssZp": 4.685, "Dp": 4.681, "splay_angle": 25.012, "splay_distance": 3.835, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": -169.393, "theta": 156.806, "eta_prime": -160.309, "theta_prime": 176.380, "eta_base": -133.924, "theta_base": -143.196, "v0": 2.850, "v1": -25.028, "v2": 36.451, "v3": -35.823, "v4": 20.812, "amplitude": 37.630, "phase_angle": 14.377, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 171.356, 244.579, 228.823 ], "x_axis": [ -0.431, 0.594, -0.679 ], "y_axis": [ -0.690, 0.268, 0.672 ], "z_axis": [ 0.581, 0.759, 0.295 ], "quaternion": [ 0.532, -0.041, 0.592, 0.604 ] } }, { "index": 1072, "index_chain": 1072, "chain_name": "2", "nt_resnum": 1225, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1225", "linked_nts": [ "///2/1224", "///2/1226" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -64.940, "beta": 175.664, "gamma": 55.003, "delta": 82.022, "epsilon": -141.986, "zeta": -62.203, "epsilon_zeta": -79.783, "bb_type": "BI", "chi": -169.874, "glyco_bond": "anti", "C5prime_xyz": [ -1.321, 8.568, 1.119 ], "P_xyz": [ 1.247, 8.829, 1.593 ], "form": ".", "ssZp": 4.618, "Dp": 4.685, "splay_angle": 29.025, "splay_distance": 4.397, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 171.331, "theta": -128.791, "eta_prime": -176.689, "theta_prime": -126.145, "eta_base": -134.936, "theta_base": -74.198, "v0": 3.958, "v1": -25.469, "v2": 36.108, "v3": -34.812, "v4": 19.472, "amplitude": 37.000, "phase_angle": 12.608, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.973, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 174.180, 247.053, 228.039 ], "x_axis": [ -0.771, 0.621, -0.140 ], "y_axis": [ -0.300, -0.161, 0.940 ], "z_axis": [ 0.561, 0.767, 0.311 ], "quaternion": [ 0.308, 0.141, 0.570, 0.749 ] } }, { "index": 1073, "index_chain": 1073, "chain_name": "2", "nt_resnum": 1226, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1226", "linked_nts": [ "///2/1225", "///2/1227" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -69.181, "beta": 168.381, "gamma": 55.640, "delta": 81.609, "epsilon": -110.440, "zeta": -60.522, "epsilon_zeta": -49.918, "bb_type": "--", "chi": -171.491, "glyco_bond": "anti", "C5prime_xyz": [ -1.142, 8.506, 1.185 ], "P_xyz": [ 1.480, 8.609, 1.302 ], "form": ".", "ssZp": 4.621, "Dp": 4.840, "splay_angle": 60.795, "splay_distance": 8.954, "splay_ratio": 0.506, "d22": null, "d64": null, "eta": 167.894, "theta": -94.706, "eta_prime": -171.900, "theta_prime": -93.275, "eta_base": -100.286, "theta_base": -59.992, "v0": 6.702, "v1": -28.183, "v2": 37.824, "v3": -34.977, "v4": 17.836, "amplitude": 38.270, "phase_angle": 8.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.916, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 173.411, 251.254, 229.084 ], "x_axis": [ -0.708, 0.197, 0.678 ], "y_axis": [ 0.475, -0.578, 0.664 ], "z_axis": [ 0.523, 0.792, 0.315 ], "quaternion": [ -0.086, 0.372, 0.451, 0.806 ] } }, { "index": 1074, "index_chain": 1074, "chain_name": "2", "nt_resnum": 1227, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1227", "linked_nts": [ "///2/1226", "///2/1228" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -87.081, "beta": -151.555, "gamma": 52.648, "delta": 81.333, "epsilon": -140.022, "zeta": -59.636, "epsilon_zeta": -80.386, "bb_type": "BI", "chi": 175.183, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.258, 1.934 ], "P_xyz": [ 0.691, 8.068, 3.445 ], "form": ".", "ssZp": 4.716, "Dp": 4.726, "splay_angle": 34.854, "splay_distance": 5.378, "splay_ratio": 0.306, "d22": null, "d64": null, "eta": 155.734, "theta": -127.463, "eta_prime": 178.999, "theta_prime": -122.094, "eta_base": -126.130, "theta_base": -89.390, "v0": 5.431, "v1": -27.101, "v2": 37.308, "v3": -35.195, "v4": 18.767, "amplitude": 37.952, "phase_angle": 10.572, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.338, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 173.979, 254.001, 237.588 ], "x_axis": [ -0.325, -0.936, 0.138 ], "y_axis": [ 0.568, -0.310, -0.762 ], "z_axis": [ 0.756, -0.169, 0.632 ], "quaternion": [ -0.500, 0.297, -0.309, 0.753 ] } }, { "index": 1075, "index_chain": 1075, "chain_name": "2", "nt_resnum": 1228, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1228", "linked_nts": [ "///2/1227", "///2/1229" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor", "alpha": -78.208, "beta": -150.559, "gamma": 41.009, "delta": 81.448, "epsilon": -139.902, "zeta": -85.573, "epsilon_zeta": -54.329, "bb_type": "BI", "chi": -179.423, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.477, 1.630 ], "P_xyz": [ 0.251, 8.666, 3.535 ], "form": "A", "ssZp": 4.599, "Dp": 4.624, "splay_angle": 23.653, "splay_distance": 3.639, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 166.755, "theta": -155.542, "eta_prime": 177.797, "theta_prime": -146.802, "eta_base": -138.702, "theta_base": -115.826, "v0": 0.643, "v1": -22.383, "v2": 34.351, "v3": -34.947, "v4": 21.637, "amplitude": 36.040, "phase_angle": 17.610, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.469, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 175.815, 251.641, 242.058 ], "x_axis": [ -0.306, -0.679, -0.667 ], "y_axis": [ 0.357, 0.568, -0.742 ], "z_axis": [ 0.883, -0.465, 0.069 ], "quaternion": [ 0.577, -0.120, 0.672, -0.449 ] } }, { "index": 1076, "index_chain": 1076, "chain_name": "2", "nt_resnum": 1229, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1229", "linked_nts": [ "///2/1228", "///2/1230" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -64.072, "beta": 166.184, "gamma": 55.752, "delta": 83.376, "epsilon": -142.937, "zeta": -73.616, "epsilon_zeta": -69.321, "bb_type": "BI", "chi": -171.751, "glyco_bond": "anti", "C5prime_xyz": [ -1.343, 8.588, 1.241 ], "P_xyz": [ 1.246, 8.770, 1.631 ], "form": "A", "ssZp": 4.579, "Dp": 4.633, "splay_angle": 22.581, "splay_distance": 3.535, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 168.134, "theta": -138.372, "eta_prime": 179.370, "theta_prime": -138.293, "eta_base": -143.941, "theta_base": -105.180, "v0": 3.160, "v1": -24.142, "v2": 34.762, "v3": -33.912, "v4": 19.426, "amplitude": 35.776, "phase_angle": 13.678, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.816, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 178.008, 249.192, 243.617 ], "x_axis": [ -0.103, -0.232, -0.967 ], "y_axis": [ 0.451, 0.856, -0.254 ], "z_axis": [ 0.886, -0.463, 0.017 ], "quaternion": [ 0.665, 0.079, 0.697, -0.257 ] } }, { "index": 1077, "index_chain": 1077, "chain_name": "2", "nt_resnum": 1230, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1230", "linked_nts": [ "///2/1229", "///2/1231" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -67.363, "beta": 166.159, "gamma": 59.804, "delta": 81.819, "epsilon": -149.924, "zeta": -80.573, "epsilon_zeta": -69.351, "bb_type": "BI", "chi": -167.287, "glyco_bond": "anti", "C5prime_xyz": [ -1.321, 8.701, 0.965 ], "P_xyz": [ 1.283, 9.009, 1.077 ], "form": "A", "ssZp": 4.544, "Dp": 4.606, "splay_angle": 23.639, "splay_distance": 3.721, "splay_ratio": 0.206, "d22": 4.869, "d64": 4.500, "eta": 164.817, "theta": -151.567, "eta_prime": -177.452, "theta_prime": -151.232, "eta_base": -124.858, "theta_base": -142.890, "v0": 1.873, "v1": -23.598, "v2": 35.084, "v3": -34.965, "v4": 20.871, "amplitude": 36.445, "phase_angle": 15.707, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.903, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 180.176, 246.537, 242.752 ], "x_axis": [ 0.191, 0.364, -0.912 ], "y_axis": [ 0.454, 0.791, 0.411 ], "z_axis": [ 0.871, -0.492, -0.014 ], "quaternion": [ 0.701, 0.322, 0.635, -0.032 ] } }, { "index": 1078, "index_chain": 1078, "chain_name": "2", "nt_resnum": 1231, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1231", "linked_nts": [ "///2/1230", "///2/1232" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -85.163, "beta": -173.458, "gamma": 60.431, "delta": 85.032, "epsilon": -155.155, "zeta": -63.875, "epsilon_zeta": -91.281, "bb_type": "BI", "chi": -162.299, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.750, 0.682 ], "P_xyz": [ 1.262, 9.057, 1.279 ], "form": "A", "ssZp": 4.321, "Dp": 4.464, "splay_angle": 20.424, "splay_distance": 3.258, "splay_ratio": 0.178, "d22": 4.278, "d64": 3.811, "eta": 165.228, "theta": -137.992, "eta_prime": 172.027, "theta_prime": -137.061, "eta_base": -169.411, "theta_base": -102.302, "v0": 1.183, "v1": -21.484, "v2": 32.402, "v3": -32.640, "v4": 19.865, "amplitude": 33.821, "phase_angle": 16.657, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.590, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 181.930, 243.265, 242.504 ], "x_axis": [ 0.019, 0.835, -0.550 ], "y_axis": [ 0.387, 0.501, 0.774 ], "z_axis": [ 0.922, -0.228, -0.313 ], "quaternion": [ 0.549, 0.456, 0.670, 0.204 ] } }, { "index": 1079, "index_chain": 1079, "chain_name": "2", "nt_resnum": 1232, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1232", "linked_nts": [ "///2/1231", "///2/1233" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -75.703, "beta": -178.816, "gamma": 54.576, "delta": 83.862, "epsilon": -143.397, "zeta": -101.787, "epsilon_zeta": -41.609, "bb_type": "BI", "chi": -148.999, "glyco_bond": "anti", "C5prime_xyz": [ -1.330, 8.752, -0.106 ], "P_xyz": [ 1.260, 9.171, 0.051 ], "form": ".", "ssZp": 3.992, "Dp": 4.581, "splay_angle": 33.857, "splay_distance": 5.303, "splay_ratio": 0.294, "d22": null, "d64": null, "eta": 166.478, "theta": -165.416, "eta_prime": -177.744, "theta_prime": -160.722, "eta_base": -129.278, "theta_base": -138.709, "v0": 1.834, "v1": -22.545, "v2": 33.519, "v3": -33.382, "v4": 19.914, "amplitude": 34.811, "phase_angle": 15.659, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.839, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 184.420, 243.248, 240.403 ], "x_axis": [ 0.199, 0.977, 0.078 ], "y_axis": [ 0.428, -0.158, 0.890 ], "z_axis": [ 0.882, -0.144, -0.449 ], "quaternion": [ 0.384, 0.672, 0.523, 0.357 ] } }, { "index": 1080, "index_chain": 1080, "chain_name": "2", "nt_resnum": 1233, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1233", "linked_nts": [ "///2/1232", "///2/1234" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -55.093, "beta": 161.544, "gamma": 50.634, "delta": 84.405, "epsilon": -151.120, "zeta": -70.327, "epsilon_zeta": -80.794, "bb_type": "BI", "chi": -165.996, "glyco_bond": "anti", "C5prime_xyz": [ -0.923, 8.549, 0.932 ], "P_xyz": [ 1.694, 8.378, 1.081 ], "form": "A", "ssZp": 4.547, "Dp": 4.640, "splay_angle": 23.534, "splay_distance": 3.731, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 171.716, "theta": -138.612, "eta_prime": 177.299, "theta_prime": -140.491, "eta_base": -156.490, "theta_base": -124.575, "v0": 6.819, "v1": -26.865, "v2": 35.656, "v3": -32.668, "v4": 16.352, "amplitude": 36.003, "phase_angle": 7.956, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.385, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 188.863, 241.916, 237.833 ], "x_axis": [ 0.015, 0.838, 0.545 ], "y_axis": [ 0.110, -0.543, 0.832 ], "z_axis": [ 0.994, 0.048, -0.101 ], "quaternion": [ 0.305, 0.644, 0.368, 0.597 ] } }, { "index": 1081, "index_chain": 1081, "chain_name": "2", "nt_resnum": 1234, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1234", "linked_nts": [ "///2/1233", "///2/1235" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.495, "beta": 173.897, "gamma": 51.180, "delta": 79.342, "epsilon": -140.652, "zeta": -83.737, "epsilon_zeta": -56.915, "bb_type": "BI", "chi": -164.414, "glyco_bond": "anti", "C5prime_xyz": [ -1.350, 8.755, 0.789 ], "P_xyz": [ 1.208, 9.174, 1.179 ], "form": "A", "ssZp": 4.516, "Dp": 4.682, "splay_angle": 28.355, "splay_distance": 4.422, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": 171.195, "theta": -148.781, "eta_prime": -175.791, "theta_prime": -145.301, "eta_base": -142.448, "theta_base": -117.284, "v0": 1.501, "v1": -24.161, "v2": 36.454, "v3": -36.585, "v4": 22.102, "amplitude": 38.000, "phase_angle": 16.402, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 191.936, 243.334, 236.265 ], "x_axis": [ 0.010, 0.468, 0.884 ], "y_axis": [ 0.106, -0.879, 0.464 ], "z_axis": [ 0.994, 0.089, -0.059 ], "quaternion": [ 0.134, 0.698, 0.206, 0.673 ] } }, { "index": 1082, "index_chain": 1082, "chain_name": "2", "nt_resnum": 1235, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1235", "linked_nts": [ "///2/1234", "///2/1236" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -50.607, "beta": 160.914, "gamma": 50.548, "delta": 79.543, "epsilon": -130.514, "zeta": -77.973, "epsilon_zeta": -52.542, "bb_type": "BI", "chi": -176.095, "glyco_bond": "anti", "C5prime_xyz": [ -1.545, 8.544, 1.449 ], "P_xyz": [ 1.017, 8.867, 1.865 ], "form": "A", "ssZp": 4.720, "Dp": 4.746, "splay_angle": 25.931, "splay_distance": 4.023, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 172.660, "theta": -134.625, "eta_prime": -175.732, "theta_prime": -131.510, "eta_base": -135.997, "theta_base": -88.588, "v0": 2.571, "v1": -25.233, "v2": 37.060, "v3": -36.597, "v4": 21.447, "amplitude": 38.341, "phase_angle": 14.849, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.718, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 195.959, 245.161, 236.447 ], "x_axis": [ -0.157, -0.083, 0.984 ], "y_axis": [ -0.054, -0.994, -0.092 ], "z_axis": [ 0.986, -0.067, 0.151 ], "quaternion": [ -0.010, 0.649, -0.053, 0.759 ] } }, { "index": 1083, "index_chain": 1083, "chain_name": "2", "nt_resnum": 1236, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1236", "linked_nts": [ "///2/1235", "///2/1237" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor", "alpha": -57.817, "beta": 159.049, "gamma": 57.775, "delta": 81.777, "epsilon": -171.048, "zeta": -74.247, "epsilon_zeta": -96.801, "bb_type": "BI", "chi": -173.510, "glyco_bond": "anti", "C5prime_xyz": [ -1.547, 8.628, 1.308 ], "P_xyz": [ 1.038, 8.948, 1.598 ], "form": "A", "ssZp": 4.354, "Dp": 4.406, "splay_angle": 25.920, "splay_distance": 3.857, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 161.628, "theta": -134.064, "eta_prime": -174.391, "theta_prime": -137.318, "eta_base": -108.250, "theta_base": -95.632, "v0": 0.891, "v1": -22.603, "v2": 34.448, "v3": -34.877, "v4": 21.460, "amplitude": 36.063, "phase_angle": 17.213, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.736, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 198.707, 245.271, 239.383 ], "x_axis": [ -0.284, -0.760, 0.584 ], "y_axis": [ 0.091, -0.628, -0.773 ], "z_axis": [ 0.954, -0.166, 0.248 ], "quaternion": [ -0.290, 0.523, -0.320, 0.735 ] } }, { "index": 1084, "index_chain": 1084, "chain_name": "2", "nt_resnum": 1237, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1237", "linked_nts": [ "///2/1236", "///2/1238" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -152.044, "beta": -139.854, "gamma": 108.127, "delta": 81.076, "epsilon": -139.893, "zeta": -74.248, "epsilon_zeta": -65.645, "bb_type": "BI", "chi": -169.930, "glyco_bond": "anti", "C5prime_xyz": [ -1.175, 8.618, 1.131 ], "P_xyz": [ 1.434, 8.471, 0.875 ], "form": "A", "ssZp": 4.626, "Dp": 4.700, "splay_angle": 23.522, "splay_distance": 3.634, "splay_ratio": 0.204, "d22": 3.963, "d64": 4.050, "eta": 158.312, "theta": -132.353, "eta_prime": 174.804, "theta_prime": -135.042, "eta_base": -124.644, "theta_base": -102.634, "v0": 3.712, "v1": -25.655, "v2": 36.665, "v3": -35.501, "v4": 20.043, "amplitude": 37.638, "phase_angle": 13.061, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 201.639, 243.870, 241.460 ], "x_axis": [ -0.161, -0.962, -0.221 ], "y_axis": [ 0.276, 0.171, -0.946 ], "z_axis": [ 0.948, -0.213, 0.238 ], "quaternion": [ 0.559, -0.328, 0.523, -0.554 ] } }, { "index": 1085, "index_chain": 1085, "chain_name": "2", "nt_resnum": 1238, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1238", "linked_nts": [ "///2/1237", "///2/1239" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -59.477, "beta": 159.620, "gamma": 58.425, "delta": 80.859, "epsilon": -141.735, "zeta": -69.913, "epsilon_zeta": -71.822, "bb_type": "BI", "chi": -168.456, "glyco_bond": "anti", "C5prime_xyz": [ -1.354, 8.603, 1.026 ], "P_xyz": [ 1.249, 8.884, 0.915 ], "form": ".", "ssZp": 4.629, "Dp": 4.708, "splay_angle": 31.062, "splay_distance": 4.738, "splay_ratio": 0.268, "d22": 4.104, "d64": 4.450, "eta": 166.354, "theta": -134.149, "eta_prime": -174.156, "theta_prime": -132.477, "eta_base": -117.057, "theta_base": -96.494, "v0": 3.861, "v1": -26.093, "v2": 37.190, "v3": -35.935, "v4": 20.239, "amplitude": 38.153, "phase_angle": 12.902, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.856, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 204.120, 241.437, 242.524 ], "x_axis": [ 0.081, -0.645, -0.760 ], "y_axis": [ 0.373, 0.726, -0.577 ], "z_axis": [ 0.924, -0.237, 0.300 ], "quaternion": [ 0.726, -0.117, 0.580, -0.351 ] } }, { "index": 1086, "index_chain": 1086, "chain_name": "2", "nt_resnum": 1239, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1239", "linked_nts": [ "///2/1238", "///2/1240" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -60.457, "beta": 166.048, "gamma": 61.254, "delta": 81.948, "epsilon": -120.936, "zeta": -82.473, "epsilon_zeta": -38.463, "bb_type": "--", "chi": -168.617, "glyco_bond": "anti", "C5prime_xyz": [ -1.298, 8.576, 1.051 ], "P_xyz": [ 1.316, 8.819, 1.062 ], "form": ".", "ssZp": 4.567, "Dp": 4.767, "splay_angle": 97.707, "splay_distance": 11.280, "splay_ratio": 0.767, "d22": null, "d64": null, "eta": 177.703, "theta": -107.339, "eta_prime": -164.158, "theta_prime": -149.291, "eta_base": -110.395, "theta_base": 132.241, "v0": 4.520, "v1": -26.064, "v2": 36.523, "v3": -34.908, "v4": 19.187, "amplitude": 37.313, "phase_angle": 11.814, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.864, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 207.858, 238.587, 241.923 ], "x_axis": [ 0.317, 0.079, -0.945 ], "y_axis": [ 0.161, 0.978, 0.136 ], "z_axis": [ 0.935, -0.195, 0.297 ], "quaternion": [ 0.805, 0.103, 0.584, -0.026 ] } }, { "index": 1087, "index_chain": 1087, "chain_name": "2", "nt_resnum": 1240, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1240", "linked_nts": [ "///2/1239", "///2/1241" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,ribose-zipper,phosphate,splayed-apart", "alpha": 175.108, "beta": 171.015, "gamma": 36.884, "delta": 81.661, "epsilon": -127.705, "zeta": -71.360, "epsilon_zeta": -56.345, "bb_type": "BI", "chi": 24.828, "glyco_bond": "syn", "C5prime_xyz": [ -5.546, 3.563, -0.201 ], "P_xyz": [ -5.602, 1.001, -0.762 ], "form": ".", "ssZp": -4.070, "Dp": 4.569, "splay_angle": 21.280, "splay_distance": 3.169, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 20.262, "theta": -126.757, "eta_prime": 44.922, "theta_prime": -118.259, "eta_base": 25.517, "theta_base": -152.378, "v0": -2.181, "v1": -19.642, "v2": 32.659, "v3": -34.877, "v4": 23.390, "amplitude": 35.247, "phase_angle": 22.096, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.482, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 209.861, 243.493, 251.880 ], "x_axis": [ -0.474, -0.383, 0.793 ], "y_axis": [ 0.469, -0.872, -0.141 ], "z_axis": [ 0.745, 0.305, 0.593 ], "quaternion": [ -0.249, 0.448, 0.048, 0.857 ] } }, { "index": 1088, "index_chain": 1088, "chain_name": "2", "nt_resnum": 1241, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1241", "linked_nts": [ "///2/1240", "///2/1242" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,ribose-zipper,cap-donor,phosphate", "alpha": -55.596, "beta": 167.410, "gamma": 54.120, "delta": 81.444, "epsilon": -106.005, "zeta": -93.233, "epsilon_zeta": -12.772, "bb_type": "--", "chi": -109.485, "glyco_bond": "anti", "C5prime_xyz": [ -1.879, 8.050, -2.272 ], "P_xyz": [ 0.351, 7.920, -3.642 ], "form": ".", "ssZp": 0.873, "Dp": 4.727, "splay_angle": 52.749, "splay_distance": 8.506, "splay_ratio": 0.449, "d22": null, "d64": null, "eta": 178.379, "theta": -107.886, "eta_prime": -161.323, "theta_prime": -112.457, "eta_base": 172.327, "theta_base": -81.532, "v0": 2.099, "v1": -23.971, "v2": 35.503, "v3": -35.250, "v4": 20.932, "amplitude": 36.826, "phase_angle": 15.407, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 207.351, 241.569, 252.074 ], "x_axis": [ -0.219, 0.903, -0.371 ], "y_axis": [ 0.102, -0.357, -0.929 ], "z_axis": [ -0.970, -0.241, -0.014 ], "quaternion": [ 0.320, -0.537, -0.468, 0.625 ] } }, { "index": 1089, "index_chain": 1089, "chain_name": "2", "nt_resnum": 1242, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1242", "linked_nts": [ "///2/1241", "///2/1243" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart", "alpha": 77.186, "beta": -108.190, "gamma": -93.263, "delta": 145.013, "epsilon": -139.443, "zeta": 76.488, "epsilon_zeta": 144.068, "bb_type": "--", "chi": 56.471, "glyco_bond": "syn", "C5prime_xyz": [ -5.430, 4.022, 1.083 ], "P_xyz": [ -7.179, 4.076, 3.043 ], "form": ".", "ssZp": -1.682, "Dp": 1.708, "splay_angle": 162.790, "splay_distance": 18.667, "splay_ratio": 0.989, "d22": 10.659, "d64": 13.270, "eta": -118.930, "theta": 21.295, "eta_prime": -112.956, "theta_prime": 48.781, "eta_base": -82.573, "theta_base": 100.051, "v0": -22.726, "v1": 36.168, "v2": -35.041, "v3": 22.879, "v4": -0.294, "amplitude": 36.913, "phase_angle": 161.674, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 205.244, 245.065, 244.612 ], "x_axis": [ -0.171, 0.688, 0.705 ], "y_axis": [ -0.363, -0.710, 0.604 ], "z_axis": [ 0.916, -0.153, 0.371 ], "quaternion": [ 0.350, 0.540, 0.150, 0.750 ] } }, { "index": 1090, "index_chain": 1090, "chain_name": "2", "nt_resnum": 1243, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1243", "linked_nts": [ "///2/1242", "///2/1244" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 35.073, "beta": 137.835, "gamma": 24.729, "delta": 81.922, "epsilon": -131.134, "zeta": -82.750, "epsilon_zeta": -48.384, "bb_type": "BI", "chi": -151.299, "glyco_bond": "anti", "C5prime_xyz": [ -1.404, 8.773, 0.005 ], "P_xyz": [ 1.208, 8.858, 0.314 ], "form": ".", "ssZp": 4.016, "Dp": 4.670, "splay_angle": 36.649, "splay_distance": 5.801, "splay_ratio": 0.315, "d22": 4.763, "d64": 5.081, "eta": -107.782, "theta": -130.292, "eta_prime": -115.527, "theta_prime": -123.672, "eta_base": -151.149, "theta_base": -89.012, "v0": 1.238, "v1": -22.788, "v2": 34.425, "v3": -34.687, "v4": 21.116, "amplitude": 35.940, "phase_angle": 16.695, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6d", "suiteness": 0.032, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 199.086, 227.716, 247.701 ], "x_axis": [ -0.794, 0.523, 0.310 ], "y_axis": [ 0.425, 0.842, -0.331 ], "z_axis": [ -0.435, -0.131, -0.891 ], "quaternion": [ -0.198, 0.252, 0.939, -0.123 ] } }, { "index": 1091, "index_chain": 1091, "chain_name": "2", "nt_resnum": 1244, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1244", "linked_nts": [ "///2/1243", "///2/1245" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,junction-loop", "alpha": -46.973, "beta": 149.370, "gamma": 66.196, "delta": 81.747, "epsilon": -151.633, "zeta": -79.681, "epsilon_zeta": -71.952, "bb_type": "BI", "chi": -151.528, "glyco_bond": "anti", "C5prime_xyz": [ -1.393, 8.751, 0.014 ], "P_xyz": [ 1.051, 8.877, -0.925 ], "form": ".", "ssZp": 4.181, "Dp": 4.605, "splay_angle": 33.344, "splay_distance": 5.291, "splay_ratio": 0.287, "d22": null, "d64": null, "eta": 175.792, "theta": -149.695, "eta_prime": -158.494, "theta_prime": -154.458, "eta_base": -108.157, "theta_base": -139.071, "v0": 2.254, "v1": -24.076, "v2": 35.533, "v3": -35.209, "v4": 20.797, "amplitude": 36.818, "phase_angle": 15.183, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.418, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 194.995, 229.975, 244.265 ], "x_axis": [ -0.234, 0.972, -0.027 ], "y_axis": [ 0.849, 0.190, -0.493 ], "z_axis": [ -0.473, -0.139, -0.870 ], "quaternion": [ -0.147, 0.601, 0.757, -0.208 ] } }, { "index": 1092, "index_chain": 1092, "chain_name": "2", "nt_resnum": 1245, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1245", "linked_nts": [ "///2/1244", "///2/1246" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,hairpin-loop,junction-loop", "alpha": -60.616, "beta": 177.737, "gamma": 49.134, "delta": 82.438, "epsilon": -115.508, "zeta": -94.236, "epsilon_zeta": -21.272, "bb_type": "--", "chi": -177.045, "glyco_bond": "anti", "C5prime_xyz": [ -1.641, 8.564, 1.504 ], "P_xyz": [ 0.716, 8.901, 2.601 ], "form": ".", "ssZp": 4.555, "Dp": 4.636, "splay_angle": 30.814, "splay_distance": 4.737, "splay_ratio": 0.267, "d22": null, "d64": null, "eta": -179.308, "theta": -135.786, "eta_prime": -175.283, "theta_prime": -127.952, "eta_base": -151.795, "theta_base": -80.779, "v0": 0.282, "v1": -21.772, "v2": 33.718, "v3": -34.542, "v4": 21.617, "amplitude": 35.492, "phase_angle": 18.193, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.913, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 191.560, 229.501, 240.269 ], "x_axis": [ 0.321, 0.893, 0.315 ], "y_axis": [ 0.947, -0.295, -0.129 ], "z_axis": [ -0.023, 0.340, -0.940 ], "quaternion": [ -0.147, 0.799, 0.575, 0.092 ] } }, { "index": 1093, "index_chain": 1093, "chain_name": "2", "nt_resnum": 1246, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1246", "linked_nts": [ "///2/1245", "///2/1247" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -50.363, "beta": 150.289, "gamma": 49.884, "delta": 82.798, "epsilon": -117.407, "zeta": -90.062, "epsilon_zeta": -27.345, "bb_type": "--", "chi": -167.934, "glyco_bond": "anti", "C5prime_xyz": [ -1.204, 8.531, 1.018 ], "P_xyz": [ 1.418, 8.464, 0.974 ], "form": ".", "ssZp": 4.531, "Dp": 4.779, "splay_angle": 34.800, "splay_distance": 5.513, "splay_ratio": 0.300, "d22": null, "d64": null, "eta": 167.762, "theta": -131.923, "eta_prime": -175.573, "theta_prime": -121.472, "eta_base": -117.925, "theta_base": -108.115, "v0": 5.456, "v1": -26.375, "v2": 36.137, "v3": -34.014, "v4": 18.040, "amplitude": 36.729, "phase_angle": 10.306, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.252, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 192.579, 232.623, 236.855 ], "x_axis": [ 0.931, 0.292, 0.221 ], "y_axis": [ 0.346, -0.897, -0.274 ], "z_axis": [ 0.119, 0.331, -0.936 ], "quaternion": [ -0.156, 0.970, 0.164, 0.088 ] } }, { "index": 1094, "index_chain": 1094, "chain_name": "2", "nt_resnum": 1247, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1247", "linked_nts": [ "///2/1246", "///2/1248" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,cap-donor,splayed-apart", "alpha": -57.365, "beta": -176.233, "gamma": 60.902, "delta": 146.556, "epsilon": -110.870, "zeta": 135.457, "epsilon_zeta": 113.672, "bb_type": "BII", "chi": -133.507, "glyco_bond": "anti", "C5prime_xyz": [ -1.733, 8.734, -0.507 ], "P_xyz": [ 0.585, 9.356, 0.556 ], "form": ".", "ssZp": 1.165, "Dp": 1.178, "splay_angle": 155.750, "splay_distance": 18.910, "splay_ratio": 0.978, "d22": 11.841, "d64": 15.081, "eta": -162.610, "theta": 157.871, "eta_prime": -140.674, "theta_prime": 130.530, "eta_base": -125.959, "theta_base": 153.963, "v0": -21.042, "v1": 35.157, "v2": -35.104, "v3": 23.880, "v4": -1.986, "amplitude": 36.462, "phase_angle": 164.317, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.473, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 194.711, 235.644, 232.766 ], "x_axis": [ 0.612, -0.383, 0.692 ], "y_axis": [ -0.242, -0.924, -0.297 ], "z_axis": [ 0.753, 0.014, -0.658 ], "quaternion": [ -0.087, 0.894, -0.175, 0.404 ] } }, { "index": 1095, "index_chain": 1095, "chain_name": "2", "nt_resnum": 1248, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1248", "linked_nts": [ "///2/1247", "///2/1249" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 43.259, "beta": 168.452, "gamma": 52.717, "delta": 84.105, "epsilon": -171.607, "zeta": -87.269, "epsilon_zeta": -84.338, "bb_type": "BI", "chi": -141.511, "glyco_bond": "anti", "C5prime_xyz": [ -1.462, 8.729, -0.566 ], "P_xyz": [ 1.119, 9.126, -0.840 ], "form": ".", "ssZp": 3.790, "Dp": 4.326, "splay_angle": 29.931, "splay_distance": 4.835, "splay_ratio": 0.258, "d22": 5.233, "d64": 5.180, "eta": -43.570, "theta": -139.643, "eta_prime": -49.159, "theta_prime": -143.381, "eta_base": -67.001, "theta_base": -120.536, "v0": 0.529, "v1": -20.939, "v2": 32.155, "v3": -32.784, "v4": 20.379, "amplitude": 33.764, "phase_angle": 17.759, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6d", "suiteness": 0.045, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 183.603, 229.069, 218.946 ], "x_axis": [ 0.638, -0.710, -0.297 ], "y_axis": [ 0.573, 0.180, 0.799 ], "z_axis": [ -0.514, -0.680, 0.522 ], "quaternion": [ 0.765, 0.484, -0.071, -0.419 ] } }, { "index": 1096, "index_chain": 1096, "chain_name": "2", "nt_resnum": 1249, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1249", "linked_nts": [ "///2/1248", "///2/1250" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -179.093, "beta": -144.209, "gamma": 149.996, "delta": 82.635, "epsilon": -120.993, "zeta": 34.652, "epsilon_zeta": 204.355, "bb_type": "--", "chi": -152.880, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.787, 0.108 ], "P_xyz": [ 0.635, 9.155, -1.645 ], "form": ".", "ssZp": 3.988, "Dp": 4.702, "splay_angle": 24.950, "splay_distance": 4.023, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 172.612, "theta": -23.340, "eta_prime": -174.402, "theta_prime": -64.661, "eta_base": -141.272, "theta_base": -109.038, "v0": 2.151, "v1": -23.453, "v2": 34.615, "v3": -34.350, "v4": 20.335, "amplitude": 35.881, "phase_angle": 15.268, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 181.878, 224.976, 220.855 ], "x_axis": [ 0.854, -0.502, 0.139 ], "y_axis": [ 0.125, 0.457, 0.881 ], "z_axis": [ -0.506, -0.734, 0.453 ], "quaternion": [ 0.831, 0.486, -0.194, -0.188 ] } }, { "index": 1097, "index_chain": 1097, "chain_name": "2", "nt_resnum": 1250, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1250", "linked_nts": [ "///2/1249", "///2/1251" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 171.087, "beta": 147.738, "gamma": 55.417, "delta": 146.106, "epsilon": -157.471, "zeta": 105.952, "epsilon_zeta": 96.576, "bb_type": "--", "chi": -124.842, "glyco_bond": "anti", "C5prime_xyz": [ -1.896, 8.599, -0.955 ], "P_xyz": [ 0.689, 8.852, -0.577 ], "form": ".", "ssZp": 1.948, "Dp": 1.981, "splay_angle": 128.001, "splay_distance": 17.177, "splay_ratio": 0.899, "d22": null, "d64": null, "eta": 25.638, "theta": 78.795, "eta_prime": 100.892, "theta_prime": -21.759, "eta_base": 105.717, "theta_base": -94.667, "v0": -21.220, "v1": 35.332, "v2": -35.168, "v3": 23.832, "v4": -1.854, "amplitude": 36.570, "phase_angle": 164.084, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.367, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 182.327, 221.807, 223.293 ], "x_axis": [ -0.817, 0.244, -0.522 ], "y_axis": [ -0.285, 0.616, 0.734 ], "z_axis": [ 0.501, 0.749, -0.434 ], "quaternion": [ 0.302, -0.012, 0.847, 0.438 ] } }, { "index": 1098, "index_chain": 1098, "chain_name": "2", "nt_resnum": 1251, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1251", "linked_nts": [ "///2/1250", "///2/1252" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -95.451, "beta": -127.900, "gamma": 174.748, "delta": 81.652, "epsilon": -146.784, "zeta": -71.508, "epsilon_zeta": -75.276, "bb_type": "BI", "chi": -164.771, "glyco_bond": "anti", "C5prime_xyz": [ -1.345, 8.642, 0.806 ], "P_xyz": [ 0.157, 9.522, -1.158 ], "form": "A", "ssZp": 4.538, "Dp": 4.660, "splay_angle": 27.875, "splay_distance": 4.346, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": -26.875, "theta": -154.619, "eta_prime": 49.027, "theta_prime": -158.229, "eta_base": 138.332, "theta_base": -127.594, "v0": 3.473, "v1": -25.192, "v2": 36.123, "v3": -35.124, "v4": 19.976, "amplitude": 37.130, "phase_angle": 13.376, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 189.984, 235.060, 231.088 ], "x_axis": [ -0.439, 0.213, -0.873 ], "y_axis": [ -0.508, -0.860, 0.046 ], "z_axis": [ -0.741, 0.464, 0.486 ], "quaternion": [ 0.216, -0.483, 0.153, 0.834 ] } }, { "index": 1099, "index_chain": 1099, "chain_name": "2", "nt_resnum": 1252, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1252", "linked_nts": [ "///2/1251", "///2/1253" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart", "alpha": -63.315, "beta": 169.836, "gamma": 62.091, "delta": 81.866, "epsilon": -140.082, "zeta": 171.880, "epsilon_zeta": 48.038, "bb_type": "--", "chi": -160.909, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.757, 0.582 ], "P_xyz": [ 1.301, 9.084, 0.476 ], "form": ".", "ssZp": 4.424, "Dp": 4.668, "splay_angle": 141.834, "splay_distance": 18.096, "splay_ratio": 0.945, "d22": null, "d64": null, "eta": 175.367, "theta": 86.403, "eta_prime": -168.232, "theta_prime": 96.003, "eta_base": -122.319, "theta_base": 176.393, "v0": 2.252, "v1": -23.989, "v2": 35.378, "v3": -35.043, "v4": 20.681, "amplitude": 36.652, "phase_angle": 15.150, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.858, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 186.824, 238.032, 231.344 ], "x_axis": [ -0.665, -0.374, -0.646 ], "y_axis": [ -0.135, -0.791, 0.597 ], "z_axis": [ -0.735, 0.484, 0.475 ], "quaternion": [ -0.070, -0.403, 0.316, 0.856 ] } }, { "index": 1100, "index_chain": 1100, "chain_name": "2", "nt_resnum": 1253, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1253", "linked_nts": [ "///2/1252", "///2/1254" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": -41.629, "beta": -133.816, "gamma": 42.592, "delta": 143.925, "epsilon": -116.150, "zeta": 68.748, "epsilon_zeta": 175.103, "bb_type": "--", "chi": -99.232, "glyco_bond": "anti", "C5prime_xyz": [ -2.445, 8.014, -2.191 ], "P_xyz": [ -0.754, 9.928, -1.592 ], "form": ".", "ssZp": 1.150, "Dp": 1.349, "splay_angle": 94.204, "splay_distance": 15.625, "splay_ratio": 0.733, "d22": null, "d64": null, "eta": -89.862, "theta": 94.824, "eta_prime": -97.302, "theta_prime": 58.360, "eta_base": 162.010, "theta_base": 50.129, "v0": -22.982, "v1": 35.929, "v2": -34.440, "v3": 22.105, "v4": 0.343, "amplitude": 36.494, "phase_angle": 160.685, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.113, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 183.118, 238.710, 249.043 ], "x_axis": [ 0.130, 0.960, -0.249 ], "y_axis": [ -0.023, -0.248, -0.968 ], "z_axis": [ -0.991, 0.132, -0.010 ], "quaternion": [ -0.467, 0.589, 0.397, -0.526 ] } }, { "index": 1101, "index_chain": 1101, "chain_name": "2", "nt_resnum": 1254, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1254", "linked_nts": [ "///2/1253", "///2/1255" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,non-stack,isolated-canonical,non-pair-contact,hairpin-loop,junction-loop,splayed-apart", "alpha": 56.378, "beta": 154.526, "gamma": -178.102, "delta": 79.540, "epsilon": -130.440, "zeta": -95.161, "epsilon_zeta": -35.279, "bb_type": "--", "chi": -160.980, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.781, 0.575 ], "P_xyz": [ -1.045, 11.040, -0.706 ], "form": ".", "ssZp": 4.400, "Dp": 4.732, "splay_angle": 32.964, "splay_distance": 5.274, "splay_ratio": 0.284, "d22": null, "d64": null, "eta": 87.119, "theta": 161.751, "eta_prime": 83.959, "theta_prime": 176.957, "eta_base": 90.198, "theta_base": -161.706, "v0": 1.832, "v1": -24.696, "v2": 36.945, "v3": -36.900, "v4": 22.082, "amplitude": 38.421, "phase_angle": 15.930, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6j", "suiteness": 0.487, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 191.667, 230.011, 239.276 ], "x_axis": [ 0.308, 0.888, 0.341 ], "y_axis": [ -0.916, 0.180, 0.359 ], "z_axis": [ 0.257, -0.422, 0.869 ], "quaternion": [ 0.768, 0.254, -0.027, 0.588 ] } }, { "index": 1102, "index_chain": 1102, "chain_name": "2", "nt_resnum": 1255, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1255", "linked_nts": [ "///2/1254", "///2/1256" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -64.272, "beta": 172.272, "gamma": 53.925, "delta": 80.043, "epsilon": 176.271, "zeta": 148.601, "epsilon_zeta": 27.670, "bb_type": "--", "chi": -160.382, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.809, 0.524 ], "P_xyz": [ 1.049, 9.383, 0.676 ], "form": ".", "ssZp": 4.287, "Dp": 4.322, "splay_angle": 155.137, "splay_distance": 17.358, "splay_ratio": 0.977, "d22": null, "d64": null, "eta": 167.022, "theta": 23.640, "eta_prime": 176.511, "theta_prime": 19.005, "eta_base": -162.158, "theta_base": -17.870, "v0": 0.698, "v1": -23.209, "v2": 35.601, "v3": -36.196, "v4": 22.386, "amplitude": 37.342, "phase_angle": 17.561, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.539, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 194.404, 227.696, 243.145 ], "x_axis": [ -0.152, 0.988, 0.002 ], "y_axis": [ -0.981, -0.151, 0.123 ], "z_axis": [ 0.122, 0.016, 0.992 ], "quaternion": [ 0.650, 0.041, 0.046, 0.757 ] } }, { "index": 1103, "index_chain": 1103, "chain_name": "2", "nt_resnum": 1256, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1256", "linked_nts": [ "///2/1255", "///2/1257" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BII,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -91.332, "beta": 67.486, "gamma": 162.941, "delta": 80.946, "epsilon": -116.982, "zeta": 161.067, "epsilon_zeta": 81.951, "bb_type": "BII", "chi": 68.184, "glyco_bond": "syn", "C5prime_xyz": [ -5.096, 4.415, 2.152 ], "P_xyz": [ -5.119, 6.342, 3.936 ], "form": ".", "ssZp": -1.312, "Dp": 4.563, "splay_angle": 127.406, "splay_distance": 16.915, "splay_ratio": 0.900, "d22": null, "d64": null, "eta": -138.328, "theta": 50.166, "eta_prime": -123.286, "theta_prime": 49.123, "eta_base": -52.688, "theta_base": 3.416, "v0": -3.176, "v1": -19.077, "v2": 32.710, "v3": -35.501, "v4": 24.376, "amplitude": 35.695, "phase_angle": 23.597, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 180.977, 221.850, 252.463 ], "x_axis": [ -0.757, -0.534, -0.377 ], "y_axis": [ 0.256, 0.289, -0.923 ], "z_axis": [ 0.602, -0.794, -0.082 ], "quaternion": [ 0.335, -0.095, 0.729, -0.588 ] } }, { "index": 1104, "index_chain": 1104, "chain_name": "2", "nt_resnum": 1257, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1257", "linked_nts": [ "///2/1256", "///2/1258" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -57.785, "beta": 136.528, "gamma": -64.040, "delta": 147.274, "epsilon": -110.214, "zeta": 146.749, "epsilon_zeta": 103.037, "bb_type": "BII", "chi": -126.744, "glyco_bond": "anti", "C5prime_xyz": [ -1.936, 8.679, -0.830 ], "P_xyz": [ -1.680, 11.008, 0.355 ], "form": ".", "ssZp": 1.124, "Dp": 1.136, "splay_angle": 139.922, "splay_distance": 18.653, "splay_ratio": 0.939, "d22": null, "d64": null, "eta": 104.516, "theta": 102.057, "eta_prime": 100.369, "theta_prime": 75.968, "eta_base": 135.372, "theta_base": 44.503, "v0": -21.719, "v1": 36.103, "v2": -35.913, "v3": 24.298, "v4": -1.813, "amplitude": 37.362, "phase_angle": 163.992, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 195.306, 227.697, 245.637 ], "x_axis": [ 0.235, -0.971, 0.040 ], "y_axis": [ -0.778, -0.164, 0.607 ], "z_axis": [ -0.583, -0.174, -0.794 ], "quaternion": [ 0.264, 0.740, -0.591, -0.184 ] } }, { "index": 1105, "index_chain": 1105, "chain_name": "2", "nt_resnum": 1258, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1258", "linked_nts": [ "///2/1257", "///2/1259" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -75.935, "beta": -125.612, "gamma": -170.223, "delta": 80.115, "epsilon": -164.721, "zeta": 104.648, "epsilon_zeta": 90.631, "bb_type": "--", "chi": -146.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.709, -0.360 ], "P_xyz": [ -0.773, 9.331, -2.854 ], "form": ".", "ssZp": 4.055, "Dp": 4.578, "splay_angle": 163.230, "splay_distance": 14.705, "splay_ratio": 0.990, "d22": null, "d64": null, "eta": 32.482, "theta": -14.447, "eta_prime": 40.510, "theta_prime": -22.552, "eta_base": 71.991, "theta_base": 82.847, "v0": 3.634, "v1": -26.239, "v2": 37.617, "v3": -36.507, "v4": 20.747, "amplitude": 38.655, "phase_angle": 13.306, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 182.257, 233.085, 257.829 ], "x_axis": [ 0.256, -0.904, 0.343 ], "y_axis": [ 0.727, -0.054, -0.684 ], "z_axis": [ 0.637, 0.425, 0.644 ], "quaternion": [ 0.679, -0.408, 0.108, -0.600 ] } }, { "index": 1106, "index_chain": 1106, "chain_name": "2", "nt_resnum": 1259, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1259", "linked_nts": [ "///2/1258", "///2/1260" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart", "alpha": -100.055, "beta": -162.847, "gamma": 60.772, "delta": 82.821, "epsilon": -106.472, "zeta": -112.413, "epsilon_zeta": 5.940, "bb_type": "--", "chi": 62.183, "glyco_bond": "syn", "C5prime_xyz": [ -5.136, 4.012, 1.902 ], "P_xyz": [ -4.964, 1.509, 2.672 ], "form": ".", "ssZp": -1.518, "Dp": 4.580, "splay_angle": 129.068, "splay_distance": 15.342, "splay_ratio": 0.904, "d22": null, "d64": null, "eta": -156.864, "theta": -114.231, "eta_prime": -128.544, "theta_prime": -129.228, "eta_base": 148.724, "theta_base": -122.236, "v0": -0.934, "v1": -20.468, "v2": 32.782, "v3": -34.257, "v4": 22.202, "amplitude": 34.908, "phase_angle": 20.103, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "9a", "suiteness": 0.127, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 193.808, 239.572, 251.449 ], "x_axis": [ 0.443, 0.213, -0.871 ], "y_axis": [ 0.348, -0.936, -0.052 ], "z_axis": [ -0.826, -0.280, -0.489 ], "quaternion": [ 0.067, 0.847, 0.166, -0.501 ] } }, { "index": 1107, "index_chain": 1107, "chain_name": "2", "nt_resnum": 1260, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1260", "linked_nts": [ "///2/1259", "///2/1261" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": 66.697, "beta": 164.886, "gamma": 64.951, "delta": 80.124, "epsilon": -119.075, "zeta": -75.676, "epsilon_zeta": -43.399, "bb_type": "--", "chi": -154.423, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.789, 0.159 ], "P_xyz": [ 1.017, 9.278, -0.387 ], "form": ".", "ssZp": 4.035, "Dp": 4.724, "splay_angle": 48.412, "splay_distance": 7.650, "splay_ratio": 0.410, "d22": null, "d64": null, "eta": -65.502, "theta": -122.717, "eta_prime": -45.430, "theta_prime": -118.886, "eta_base": -87.770, "theta_base": -88.835, "v0": 0.675, "v1": -23.302, "v2": 35.770, "v3": -36.378, "v4": 22.506, "amplitude": 37.525, "phase_angle": 17.593, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.641, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 194.651, 238.122, 266.699 ], "x_axis": [ -0.726, -0.658, 0.198 ], "y_axis": [ -0.043, -0.244, -0.969 ], "z_axis": [ 0.686, -0.712, 0.149 ], "quaternion": [ -0.211, 0.304, -0.577, 0.728 ] } }, { "index": 1108, "index_chain": 1108, "chain_name": "2", "nt_resnum": 1261, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1261", "linked_nts": [ "///2/1260", "///2/1262" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -80.786, "beta": -165.058, "gamma": 57.695, "delta": 82.896, "epsilon": -111.146, "zeta": -86.664, "epsilon_zeta": -24.482, "bb_type": "--", "chi": -162.446, "glyco_bond": "anti", "C5prime_xyz": [ -1.259, 8.729, 0.681 ], "P_xyz": [ 1.253, 9.045, 1.369 ], "form": ".", "ssZp": 4.264, "Dp": 4.711, "splay_angle": 31.468, "splay_distance": 5.037, "splay_ratio": 0.271, "d22": 3.821, "d64": 3.280, "eta": 173.519, "theta": -125.931, "eta_prime": -174.132, "theta_prime": -120.144, "eta_base": -139.136, "theta_base": -83.612, "v0": 2.508, "v1": -23.805, "v2": 34.812, "v3": -34.341, "v4": 20.105, "amplitude": 35.992, "phase_angle": 14.712, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.416, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 194.718, 230.500, 266.046 ], "x_axis": [ -0.832, 0.247, -0.496 ], "y_axis": [ 0.541, 0.557, -0.630 ], "z_axis": [ 0.120, -0.793, -0.597 ], "quaternion": [ 0.178, 0.228, 0.864, -0.412 ] } }, { "index": 1109, "index_chain": 1109, "chain_name": "2", "nt_resnum": 1262, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1262", "linked_nts": [ "///2/1261", "///2/1263" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -67.869, "beta": 164.720, "gamma": 55.397, "delta": 85.544, "epsilon": -111.344, "zeta": -60.323, "epsilon_zeta": -51.021, "bb_type": "--", "chi": -167.716, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.719, 0.986 ], "P_xyz": [ 1.144, 8.967, 1.442 ], "form": ".", "ssZp": 4.269, "Dp": 4.542, "splay_angle": 54.383, "splay_distance": 8.459, "splay_ratio": 0.458, "d22": 5.141, "d64": 6.053, "eta": 165.823, "theta": -97.026, "eta_prime": -178.719, "theta_prime": -87.230, "eta_base": -134.712, "theta_base": -46.695, "v0": -0.215, "v1": -20.122, "v2": 31.561, "v3": -32.572, "v4": 20.682, "amplitude": 33.369, "phase_angle": 18.948, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.294, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 193.130, 228.376, 261.763 ], "x_axis": [ -0.193, 0.967, -0.167 ], "y_axis": [ 0.981, 0.188, -0.044 ], "z_axis": [ -0.011, -0.172, -0.985 ], "quaternion": [ 0.050, 0.633, 0.769, -0.070 ] } }, { "index": 1110, "index_chain": 1110, "chain_name": "2", "nt_resnum": 1263, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1263", "linked_nts": [ "///2/1262", "///2/1264" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -55.107, "beta": 155.379, "gamma": 68.237, "delta": 84.446, "epsilon": -84.072, "zeta": -27.997, "epsilon_zeta": -56.075, "bb_type": "--", "chi": -149.183, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.732, -0.122 ], "P_xyz": [ 1.093, 8.838, -1.026 ], "form": ".", "ssZp": 3.265, "Dp": 4.588, "splay_angle": 24.569, "splay_distance": 4.168, "splay_ratio": 0.214, "d22": 3.522, "d64": 4.339, "eta": -175.581, "theta": -29.339, "eta_prime": -140.987, "theta_prime": -60.387, "eta_base": -83.202, "theta_base": -97.644, "v0": 2.226, "v1": -23.296, "v2": 34.295, "v3": -33.926, "v4": 20.033, "amplitude": 35.518, "phase_angle": 15.079, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.212, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 197.119, 233.626, 256.464 ], "x_axis": [ 0.929, 0.352, -0.112 ], "y_axis": [ 0.358, -0.932, 0.047 ], "z_axis": [ -0.088, -0.083, -0.993 ], "quaternion": [ 0.033, 0.982, 0.181, -0.051 ] } }, { "index": 1111, "index_chain": 1111, "chain_name": "2", "nt_resnum": 1264, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1264", "linked_nts": [ "///2/1263", "///2/1265" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-donor,phosphate", "alpha": -170.964, "beta": 175.625, "gamma": 66.329, "delta": 143.489, "epsilon": -93.054, "zeta": 110.291, "epsilon_zeta": 156.655, "bb_type": "--", "chi": -136.830, "glyco_bond": "anti", "C5prime_xyz": [ -1.867, 8.804, -0.395 ], "P_xyz": [ 0.532, 9.479, 0.397 ], "form": ".", "ssZp": 0.851, "Dp": 0.839, "splay_angle": 22.968, "splay_distance": 4.100, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 73.032, "theta": 141.187, "eta_prime": 126.128, "theta_prime": 88.449, "eta_base": 122.835, "theta_base": 82.042, "v0": -23.411, "v1": 36.094, "v2": -34.301, "v3": 21.665, "v4": 0.879, "amplitude": 36.535, "phase_angle": 159.858, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 199.435, 233.367, 253.009 ], "x_axis": [ -0.992, 0.107, 0.061 ], "y_axis": [ -0.104, -0.993, 0.050 ], "z_axis": [ 0.066, 0.043, 0.997 ], "quaternion": [ 0.053, 0.032, 0.023, 0.998 ] } }, { "index": 1112, "index_chain": 1112, "chain_name": "2", "nt_resnum": 1265, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1265", "linked_nts": [ "///2/1264", "///2/1266" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-pair-contact,junction-loop,cap-acceptor", "alpha": 43.689, "beta": -143.038, "gamma": 175.476, "delta": 82.088, "epsilon": -106.051, "zeta": -75.058, "epsilon_zeta": -30.993, "bb_type": "--", "chi": 84.648, "glyco_bond": "syn", "C5prime_xyz": [ -4.617, 4.945, 2.801 ], "P_xyz": [ -3.608, 5.289, 5.196 ], "form": ".", "ssZp": 0.211, "Dp": 4.519, "splay_angle": 51.750, "splay_distance": 7.203, "splay_ratio": 0.439, "d22": null, "d64": null, "eta": 129.060, "theta": -117.368, "eta_prime": 107.901, "theta_prime": -112.203, "eta_base": 126.663, "theta_base": -90.225, "v0": -2.850, "v1": -19.075, "v2": 32.376, "v3": -34.949, "v4": 23.859, "amplitude": 35.209, "phase_angle": 23.140, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.330, "filter_rmsd": 0.044, "frame": { "rmsd": 0.012, "origin": [ 200.382, 230.660, 250.079 ], "x_axis": [ -0.991, -0.017, 0.132 ], "y_axis": [ -0.003, -0.989, -0.151 ], "z_axis": [ 0.133, -0.150, 0.980 ], "quaternion": [ -0.004, 0.067, -0.076, 0.995 ] } }, { "index": 1113, "index_chain": 1113, "chain_name": "2", "nt_resnum": 1266, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1266", "linked_nts": [ "///2/1265", "///2/1267" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,A-minor,ribose-zipper", "alpha": -102.991, "beta": -129.954, "gamma": 67.721, "delta": 82.841, "epsilon": -156.334, "zeta": -78.713, "epsilon_zeta": -77.621, "bb_type": "BI", "chi": -169.948, "glyco_bond": "anti", "C5prime_xyz": [ -1.225, 8.611, 1.136 ], "P_xyz": [ 1.057, 8.237, 2.377 ], "form": "A", "ssZp": 4.542, "Dp": 4.573, "splay_angle": 24.113, "splay_distance": 3.752, "splay_ratio": 0.210, "d22": 5.044, "d64": 4.886, "eta": 162.467, "theta": -150.602, "eta_prime": -178.327, "theta_prime": -148.081, "eta_base": -146.050, "theta_base": -141.367, "v0": 3.666, "v1": -24.837, "v2": 35.384, "v3": -34.247, "v4": 19.287, "amplitude": 36.306, "phase_angle": 12.945, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.063, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 205.459, 234.297, 253.666 ], "x_axis": [ -0.511, -0.667, 0.543 ], "y_axis": [ 0.043, -0.650, -0.758 ], "z_axis": [ 0.859, -0.364, 0.360 ], "quaternion": [ -0.223, 0.441, -0.353, 0.794 ] } }, { "index": 1114, "index_chain": 1114, "chain_name": "2", "nt_resnum": 1267, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1267", "linked_nts": [ "///2/1266", "///2/1268" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,ribose-zipper", "alpha": -76.669, "beta": -175.619, "gamma": 56.793, "delta": 82.857, "epsilon": -154.893, "zeta": -73.299, "epsilon_zeta": -81.594, "bb_type": "BI", "chi": -161.892, "glyco_bond": "anti", "C5prime_xyz": [ -1.183, 8.709, 0.657 ], "P_xyz": [ 1.393, 8.971, 1.099 ], "form": "A", "ssZp": 4.443, "Dp": 4.581, "splay_angle": 22.392, "splay_distance": 3.544, "splay_ratio": 0.195, "d22": 4.498, "d64": 4.506, "eta": 168.448, "theta": -148.708, "eta_prime": 174.711, "theta_prime": -147.670, "eta_base": -168.703, "theta_base": -127.757, "v0": 3.649, "v1": -24.757, "v2": 35.256, "v3": -34.123, "v4": 19.225, "amplitude": 36.176, "phase_angle": 12.946, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.816, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 208.426, 235.446, 255.655 ], "x_axis": [ -0.558, -0.820, 0.129 ], "y_axis": [ 0.321, -0.356, -0.878 ], "z_axis": [ 0.765, -0.449, 0.462 ], "quaternion": [ -0.370, 0.290, -0.430, 0.771 ] } }, { "index": 1115, "index_chain": 1115, "chain_name": "2", "nt_resnum": 1268, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1268", "linked_nts": [ "///2/1267", "///2/1269" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -64.376, "beta": 173.815, "gamma": 55.066, "delta": 81.947, "epsilon": -107.173, "zeta": -127.288, "epsilon_zeta": 20.115, "bb_type": "--", "chi": -158.673, "glyco_bond": "anti", "C5prime_xyz": [ -1.304, 8.782, 0.452 ], "P_xyz": [ 1.290, 9.153, 0.611 ], "form": ".", "ssZp": 4.066, "Dp": 4.699, "splay_angle": 24.316, "splay_distance": 3.952, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": -178.563, "theta": -116.316, "eta_prime": -170.748, "theta_prime": -121.111, "eta_base": -143.855, "theta_base": -84.977, "v0": 1.745, "v1": -23.357, "v2": 34.896, "v3": -34.870, "v4": 20.883, "amplitude": 36.290, "phase_angle": 15.928, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 210.278, 234.375, 258.480 ], "x_axis": [ -0.371, -0.867, -0.333 ], "y_axis": [ 0.606, 0.046, -0.794 ], "z_axis": [ 0.704, -0.497, 0.508 ], "quaternion": [ 0.544, -0.137, 0.477, -0.677 ] } }, { "index": 1116, "index_chain": 1116, "chain_name": "2", "nt_resnum": 1269, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1269", "linked_nts": [ "///2/1268", "///2/1270" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": 128.962, "beta": -112.999, "gamma": 165.077, "delta": 81.887, "epsilon": -96.602, "zeta": -138.327, "epsilon_zeta": 41.724, "bb_type": "--", "chi": -170.567, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.604, 1.149 ], "P_xyz": [ 0.392, 9.087, -0.708 ], "form": ".", "ssZp": 4.406, "Dp": 4.725, "splay_angle": 16.008, "splay_distance": 2.669, "splay_ratio": 0.152, "d22": null, "d64": null, "eta": 150.354, "theta": -169.338, "eta_prime": 172.323, "theta_prime": -164.778, "eta_base": -137.597, "theta_base": -163.608, "v0": 3.428, "v1": -25.060, "v2": 35.963, "v3": -34.987, "v4": 19.922, "amplitude": 36.973, "phase_angle": 13.426, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 211.864, 230.758, 258.623 ], "x_axis": [ -0.242, -0.335, -0.911 ], "y_axis": [ 0.840, 0.397, -0.370 ], "z_axis": [ 0.485, -0.854, 0.185 ], "quaternion": [ 0.579, 0.209, 0.603, -0.508 ] } }, { "index": 1117, "index_chain": 1117, "chain_name": "2", "nt_resnum": 1270, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1270", "linked_nts": [ "///2/1269", "///2/1271" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -35.274, "beta": 131.102, "gamma": 37.491, "delta": 83.272, "epsilon": 171.877, "zeta": -83.750, "epsilon_zeta": -104.373, "bb_type": "BI", "chi": -117.111, "glyco_bond": "anti", "C5prime_xyz": [ -1.603, 8.293, -1.874 ], "P_xyz": [ 0.844, 7.724, -2.631 ], "form": ".", "ssZp": 2.795, "Dp": 4.238, "splay_angle": 24.410, "splay_distance": 4.206, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 160.537, "theta": -138.941, "eta_prime": 175.136, "theta_prime": -163.385, "eta_base": -174.236, "theta_base": -178.958, "v0": 3.514, "v1": -24.023, "v2": 34.260, "v3": -33.180, "v4": 18.737, "amplitude": 35.164, "phase_angle": 13.019, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.044, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 213.260, 228.853, 259.864 ], "x_axis": [ 0.052, -0.135, -0.990 ], "y_axis": [ 0.997, -0.046, 0.059 ], "z_axis": [ -0.054, -0.990, 0.132 ], "quaternion": [ 0.533, 0.492, 0.439, -0.531 ] } }, { "index": 1118, "index_chain": 1118, "chain_name": "2", "nt_resnum": 1271, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1271", "linked_nts": [ "///2/1270", "///2/1272" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 147.745, "beta": -153.740, "gamma": 176.004, "delta": 82.445, "epsilon": -78.573, "zeta": -149.006, "epsilon_zeta": 70.433, "bb_type": "--", "chi": -156.130, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.787, 0.298 ], "P_xyz": [ 0.054, 9.989, -1.603 ], "form": ".", "ssZp": 3.534, "Dp": 4.561, "splay_angle": 46.303, "splay_distance": 7.339, "splay_ratio": 0.400, "d22": 5.362, "d64": 4.943, "eta": 178.595, "theta": 171.344, "eta_prime": 175.370, "theta_prime": -170.938, "eta_base": 174.661, "theta_base": -142.785, "v0": 2.108, "v1": -23.577, "v2": 34.855, "v3": -34.605, "v4": 20.512, "amplitude": 36.143, "phase_angle": 15.342, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.560, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 211.895, 225.544, 262.073 ], "x_axis": [ 0.094, -0.062, -0.994 ], "y_axis": [ 0.988, -0.116, 0.101 ], "z_axis": [ -0.122, -0.991, 0.051 ], "quaternion": [ 0.507, 0.538, 0.430, -0.518 ] } }, { "index": 1119, "index_chain": 1119, "chain_name": "2", "nt_resnum": 1272, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1272", "linked_nts": [ "///2/1271", "///2/1273" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -46.050, "beta": 136.837, "gamma": 34.167, "delta": 81.023, "epsilon": -112.870, "zeta": -47.793, "epsilon_zeta": -65.078, "bb_type": "--", "chi": -171.126, "glyco_bond": "anti", "C5prime_xyz": [ -1.195, 8.568, 1.206 ], "P_xyz": [ 1.377, 8.194, 1.558 ], "form": ".", "ssZp": 4.575, "Dp": 4.777, "splay_angle": 29.791, "splay_distance": 5.232, "splay_ratio": 0.268, "d22": 4.161, "d64": 5.456, "eta": 175.944, "theta": -104.518, "eta_prime": 175.226, "theta_prime": -103.275, "eta_base": -169.400, "theta_base": -86.063, "v0": 4.592, "v1": -26.351, "v2": 36.965, "v3": -35.334, "v4": 19.365, "amplitude": 37.762, "phase_angle": 11.794, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 212.890, 218.273, 262.123 ], "x_axis": [ 0.233, 0.699, -0.676 ], "y_axis": [ 0.710, 0.352, 0.609 ], "z_axis": [ 0.664, -0.622, -0.414 ], "quaternion": [ 0.541, 0.569, 0.619, -0.005 ] } }, { "index": 1120, "index_chain": 1120, "chain_name": "2", "nt_resnum": 1273, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1273", "linked_nts": [ "///2/1272", "///2/1274" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,A-minor,phosphate", "alpha": -88.112, "beta": 103.926, "gamma": 167.700, "delta": 148.577, "epsilon": -127.643, "zeta": -104.658, "epsilon_zeta": -22.985, "bb_type": "--", "chi": -174.333, "glyco_bond": "anti", "C5prime_xyz": [ -1.923, 8.356, 1.698 ], "P_xyz": [ -0.645, 10.476, 0.822 ], "form": ".", "ssZp": 0.962, "Dp": 1.460, "splay_angle": 58.518, "splay_distance": 8.723, "splay_ratio": 0.498, "d22": null, "d64": null, "eta": -103.765, "theta": 171.803, "eta_prime": -99.658, "theta_prime": 169.905, "eta_base": -65.644, "theta_base": 98.434, "v0": -19.846, "v1": 35.184, "v2": -36.202, "v3": 25.659, "v4": -3.829, "amplitude": 37.141, "phase_angle": 167.088, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 215.317, 218.004, 257.496 ], "x_axis": [ 0.571, 0.786, -0.238 ], "y_axis": [ 0.477, -0.082, 0.875 ], "z_axis": [ 0.669, -0.613, -0.421 ], "quaternion": [ 0.517, 0.720, 0.438, 0.150 ] } }, { "index": 1121, "index_chain": 1121, "chain_name": "2", "nt_resnum": 1274, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1274", "linked_nts": [ "///2/1273", "///2/1275" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -65.344, "beta": 170.029, "gamma": -59.128, "delta": 148.816, "epsilon": -87.707, "zeta": -64.228, "epsilon_zeta": -23.478, "bb_type": "--", "chi": 49.918, "glyco_bond": "syn", "C5prime_xyz": [ -5.337, 3.638, 0.635 ], "P_xyz": [ -7.463, 2.287, -0.096 ], "form": ".", "ssZp": -0.579, "Dp": 0.621, "splay_angle": 110.659, "splay_distance": 17.498, "splay_ratio": 0.823, "d22": null, "d64": null, "eta": 96.316, "theta": -25.897, "eta_prime": 110.220, "theta_prime": -85.675, "eta_base": 59.813, "theta_base": -66.721, "v0": -19.608, "v1": 34.885, "v2": -35.971, "v3": 25.582, "v4": -3.961, "amplitude": 36.873, "phase_angle": 167.299, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "2o", "suiteness": 0.097, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 210.398, 217.483, 264.681 ], "x_axis": [ -0.761, 0.590, -0.271 ], "y_axis": [ -0.204, -0.613, -0.763 ], "z_axis": [ -0.616, -0.525, 0.587 ], "quaternion": [ 0.231, -0.258, -0.374, 0.860 ] } }, { "index": 1122, "index_chain": 1122, "chain_name": "2", "nt_resnum": 1275, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1275", "linked_nts": [ "///2/1274", "///2/1276" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BII,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 155.541, "beta": 108.743, "gamma": -172.680, "delta": 80.908, "epsilon": -135.326, "zeta": 167.996, "epsilon_zeta": 56.677, "bb_type": "BII", "chi": -160.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.738, 0.570 ], "P_xyz": [ -1.975, 11.069, -0.426 ], "form": ".", "ssZp": 4.425, "Dp": 4.726, "splay_angle": 103.040, "splay_distance": 14.237, "splay_ratio": 0.783, "d22": null, "d64": null, "eta": 92.968, "theta": 41.604, "eta_prime": 150.592, "theta_prime": 67.924, "eta_base": 136.891, "theta_base": 103.354, "v0": 3.271, "v1": -25.398, "v2": 36.673, "v3": -35.795, "v4": 20.493, "amplitude": 37.755, "phase_angle": 13.750, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 224.363, 211.104, 256.288 ], "x_axis": [ 0.340, 0.621, 0.706 ], "y_axis": [ -0.868, -0.080, 0.489 ], "z_axis": [ 0.361, -0.779, 0.512 ], "quaternion": [ 0.666, 0.476, -0.130, 0.560 ] } }, { "index": 1123, "index_chain": 1123, "chain_name": "2", "nt_resnum": 1276, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1276", "linked_nts": [ "///2/1275", "///2/1277" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -60.542, "beta": 152.378, "gamma": 31.883, "delta": 80.838, "epsilon": -127.405, "zeta": -66.268, "epsilon_zeta": -61.137, "bb_type": "BI", "chi": 177.769, "glyco_bond": "anti", "C5prime_xyz": [ -1.920, 8.455, 1.728 ], "P_xyz": [ 0.387, 8.677, 2.951 ], "form": ".", "ssZp": 4.589, "Dp": 4.611, "splay_angle": 34.255, "splay_distance": 5.235, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": -178.760, "theta": -119.243, "eta_prime": 170.802, "theta_prime": -113.537, "eta_base": 148.267, "theta_base": -52.852, "v0": -2.585, "v1": -19.730, "v2": 33.199, "v3": -35.613, "v4": 24.093, "amplitude": 35.964, "phase_angle": 22.614, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.589, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 216.636, 199.381, 253.934 ], "x_axis": [ 0.561, 0.543, -0.625 ], "y_axis": [ -0.074, 0.785, 0.616 ], "z_axis": [ 0.825, -0.299, 0.480 ], "quaternion": [ 0.840, 0.272, 0.431, 0.184 ] } }, { "index": 1124, "index_chain": 1124, "chain_name": "2", "nt_resnum": 1277, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1277", "linked_nts": [ "///2/1276", "///2/1278" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -61.984, "beta": 159.849, "gamma": 55.436, "delta": 82.697, "epsilon": -159.041, "zeta": -77.523, "epsilon_zeta": -81.518, "bb_type": "BI", "chi": -167.921, "glyco_bond": "anti", "C5prime_xyz": [ -1.246, 8.667, 1.009 ], "P_xyz": [ 1.368, 8.799, 1.172 ], "form": ".", "ssZp": 4.474, "Dp": 4.525, "splay_angle": 28.189, "splay_distance": 4.240, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 154.505, "theta": -153.750, "eta_prime": -174.435, "theta_prime": -155.206, "eta_base": -87.246, "theta_base": -135.733, "v0": 2.678, "v1": -23.886, "v2": 34.769, "v3": -34.187, "v4": 19.882, "amplitude": 35.899, "phase_angle": 14.415, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.706, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 221.353, 201.613, 254.355 ], "x_axis": [ 0.153, 0.933, 0.325 ], "y_axis": [ -0.546, -0.195, 0.815 ], "z_axis": [ 0.824, -0.302, 0.480 ], "quaternion": [ 0.600, 0.466, 0.208, 0.617 ] } }, { "index": 1125, "index_chain": 1125, "chain_name": "2", "nt_resnum": 1278, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1278", "linked_nts": [ "///2/1277", "///2/1279" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -73.468, "beta": -174.871, "gamma": 52.595, "delta": 83.653, "epsilon": -141.291, "zeta": -73.699, "epsilon_zeta": -67.592, "bb_type": "BI", "chi": -175.895, "glyco_bond": "anti", "C5prime_xyz": [ -1.025, 8.312, 1.479 ], "P_xyz": [ 1.481, 8.179, 2.259 ], "form": "A", "ssZp": 4.727, "Dp": 4.735, "splay_angle": 26.455, "splay_distance": 4.032, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 170.974, "theta": -138.367, "eta_prime": 176.142, "theta_prime": -134.681, "eta_base": -153.410, "theta_base": -107.038, "v0": 7.952, "v1": -28.170, "v2": 36.649, "v3": -33.075, "v4": 15.883, "amplitude": 36.886, "phase_angle": 6.492, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.840, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 225.253, 200.020, 254.834 ], "x_axis": [ -0.309, 0.766, 0.563 ], "y_axis": [ -0.670, -0.595, 0.443 ], "z_axis": [ 0.675, -0.241, 0.698 ], "quaternion": [ 0.445, 0.384, 0.062, 0.806 ] } }, { "index": 1126, "index_chain": 1126, "chain_name": "2", "nt_resnum": 1279, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1279", "linked_nts": [ "///2/1278", "///2/1280" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.114, "beta": 175.556, "gamma": 53.330, "delta": 81.608, "epsilon": -144.851, "zeta": -76.327, "epsilon_zeta": -68.524, "bb_type": "BI", "chi": -172.201, "glyco_bond": "anti", "C5prime_xyz": [ -1.196, 8.567, 1.265 ], "P_xyz": [ 1.358, 8.716, 1.850 ], "form": "A", "ssZp": 4.646, "Dp": 4.675, "splay_angle": 20.451, "splay_distance": 3.131, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 169.796, "theta": -145.307, "eta_prime": -175.821, "theta_prime": -143.862, "eta_base": -132.688, "theta_base": -115.529, "v0": 4.152, "v1": -25.764, "v2": 36.407, "v3": -34.997, "v4": 19.453, "amplitude": 37.269, "phase_angle": 12.350, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.963, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 228.378, 200.974, 257.197 ], "x_axis": [ -0.738, 0.275, 0.616 ], "y_axis": [ -0.373, -0.927, -0.034 ], "z_axis": [ 0.562, -0.255, 0.787 ], "quaternion": [ 0.174, 0.317, -0.078, 0.929 ] } }, { "index": 1127, "index_chain": 1127, "chain_name": "2", "nt_resnum": 1280, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1280", "linked_nts": [ "///2/1279", "///2/1281" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -72.402, "beta": 174.991, "gamma": 54.132, "delta": 82.739, "epsilon": -161.502, "zeta": -80.302, "epsilon_zeta": -81.200, "bb_type": "BI", "chi": -170.012, "glyco_bond": "anti", "C5prime_xyz": [ -1.132, 8.556, 1.128 ], "P_xyz": [ 1.457, 8.657, 1.563 ], "form": "A", "ssZp": 4.553, "Dp": 4.574, "splay_angle": 22.950, "splay_distance": 3.776, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 160.029, "theta": -127.929, "eta_prime": 173.945, "theta_prime": -135.481, "eta_base": -140.554, "theta_base": -115.069, "v0": 5.602, "v1": -26.513, "v2": 36.215, "v3": -33.979, "v4": 17.932, "amplitude": 36.781, "phase_angle": 10.071, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.935, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 229.985, 201.617, 259.805 ], "x_axis": [ -0.903, -0.293, 0.313 ], "y_axis": [ 0.181, -0.923, -0.340 ], "z_axis": [ 0.389, -0.251, 0.887 ], "quaternion": [ -0.123, 0.182, -0.153, 0.963 ] } }, { "index": 1128, "index_chain": 1128, "chain_name": "2", "nt_resnum": 1281, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1281", "linked_nts": [ "///2/1280", "///2/1282" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": 168.555, "beta": -152.868, "gamma": 158.997, "delta": 82.741, "epsilon": -154.199, "zeta": -60.585, "epsilon_zeta": -93.614, "bb_type": "BI", "chi": 173.533, "glyco_bond": "anti", "C5prime_xyz": [ -1.497, 8.240, 2.026 ], "P_xyz": [ 0.677, 9.529, 1.323 ], "form": ".", "ssZp": 4.484, "Dp": 4.594, "splay_angle": 27.351, "splay_distance": 3.963, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 158.153, "theta": -136.764, "eta_prime": 179.714, "theta_prime": -141.004, "eta_base": -134.317, "theta_base": -89.888, "v0": 4.079, "v1": -25.011, "v2": 35.263, "v3": -33.899, "v4": 18.828, "amplitude": 36.090, "phase_angle": 12.287, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.321, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 229.843, 202.449, 263.486 ], "x_axis": [ -0.702, -0.712, 0.014 ], "y_axis": [ 0.640, -0.639, -0.427 ], "z_axis": [ 0.313, -0.290, 0.904 ], "quaternion": [ -0.375, 0.091, -0.199, 0.901 ] } }, { "index": 1129, "index_chain": 1129, "chain_name": "2", "nt_resnum": 1282, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1282", "linked_nts": [ "///2/1281", "///2/1283" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -122.737, "beta": -152.685, "gamma": 75.671, "delta": 82.858, "epsilon": -118.040, "zeta": -90.031, "epsilon_zeta": -28.009, "bb_type": "--", "chi": -173.256, "glyco_bond": "anti", "C5prime_xyz": [ -1.133, 8.377, 1.298 ], "P_xyz": [ 1.454, 8.173, 1.713 ], "form": ".", "ssZp": 4.711, "Dp": 4.836, "splay_angle": 40.153, "splay_distance": 6.206, "splay_ratio": 0.345, "d22": null, "d64": null, "eta": 158.012, "theta": -131.402, "eta_prime": 174.672, "theta_prime": -123.985, "eta_base": -116.663, "theta_base": -102.916, "v0": 7.890, "v1": -28.833, "v2": 37.727, "v3": -34.187, "v4": 16.616, "amplitude": 38.004, "phase_angle": 6.914, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 229.390, 200.045, 266.605 ], "x_axis": [ 0.146, -0.884, -0.445 ], "y_axis": [ 0.913, 0.293, -0.283 ], "z_axis": [ 0.381, -0.365, 0.850 ], "quaternion": [ 0.757, 0.027, 0.273, -0.594 ] } }, { "index": 1130, "index_chain": 1130, "chain_name": "2", "nt_resnum": 1283, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1283", "linked_nts": [ "///2/1282", "///2/1284" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,internal-loop", "alpha": -59.273, "beta": 164.023, "gamma": 74.998, "delta": 81.122, "epsilon": -139.867, "zeta": -115.199, "epsilon_zeta": -24.668, "bb_type": "--", "chi": -156.683, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.819, 0.309 ], "P_xyz": [ 1.101, 9.238, -0.417 ], "form": ".", "ssZp": 4.294, "Dp": 4.662, "splay_angle": 44.416, "splay_distance": 7.884, "splay_ratio": 0.388, "d22": null, "d64": null, "eta": -174.610, "theta": -158.847, "eta_prime": -159.842, "theta_prime": -168.807, "eta_base": -128.752, "theta_base": 154.757, "v0": 0.995, "v1": -23.161, "v2": 35.218, "v3": -35.635, "v4": 21.862, "amplitude": 36.846, "phase_angle": 17.098, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.164, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 230.912, 195.642, 270.705 ], "x_axis": [ 0.675, -0.509, -0.533 ], "y_axis": [ 0.604, 0.797, 0.004 ], "z_axis": [ 0.423, -0.325, 0.846 ], "quaternion": [ 0.911, 0.090, 0.262, -0.306 ] } }, { "index": 1131, "index_chain": 1131, "chain_name": "2", "nt_resnum": 1284, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1284", "linked_nts": [ "///2/1283", "///2/1285" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 63.329, "beta": -162.591, "gamma": -88.799, "delta": 150.892, "epsilon": -152.049, "zeta": 71.133, "epsilon_zeta": 136.818, "bb_type": "--", "chi": -124.136, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.520, -0.904 ], "P_xyz": [ -1.088, 10.923, -1.784 ], "form": ".", "ssZp": 1.757, "Dp": 1.798, "splay_angle": 118.297, "splay_distance": 17.671, "splay_ratio": 0.859, "d22": null, "d64": null, "eta": -166.275, "theta": -0.658, "eta_prime": -170.970, "theta_prime": -22.425, "eta_base": 151.939, "theta_base": -57.128, "v0": -17.716, "v1": 33.940, "v2": -36.277, "v3": 26.960, "v4": -6.012, "amplitude": 36.781, "phase_angle": 170.500, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.186, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 226.155, 196.051, 276.979 ], "x_axis": [ 0.071, -0.499, -0.864 ], "y_axis": [ 0.933, 0.338, -0.119 ], "z_axis": [ 0.352, -0.798, 0.490 ], "quaternion": [ 0.689, 0.246, 0.441, -0.520 ] } }, { "index": 1132, "index_chain": 1132, "chain_name": "2", "nt_resnum": 1285, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1285", "linked_nts": [ "///2/1284", "///2/1286" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -102.544, "beta": -173.902, "gamma": -63.368, "delta": 145.255, "epsilon": -113.725, "zeta": -26.571, "epsilon_zeta": -87.154, "bb_type": "--", "chi": -80.612, "glyco_bond": "anti", "C5prime_xyz": [ -2.942, 7.426, -2.738 ], "P_xyz": [ -3.147, 9.507, -4.332 ], "form": ".", "ssZp": 0.887, "Dp": 1.267, "splay_angle": 118.638, "splay_distance": 16.714, "splay_ratio": 0.861, "d22": null, "d64": null, "eta": 77.085, "theta": -61.105, "eta_prime": 107.418, "theta_prime": -49.441, "eta_base": 133.142, "theta_base": -6.267, "v0": -23.277, "v1": 36.669, "v2": -35.322, "v3": 22.828, "v4": 0.066, "amplitude": 37.331, "phase_angle": 161.117, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 243.584, 196.826, 279.785 ], "x_axis": [ -0.051, -0.598, -0.800 ], "y_axis": [ -0.849, 0.448, -0.280 ], "z_axis": [ 0.526, 0.665, -0.530 ], "quaternion": [ 0.465, -0.508, 0.712, 0.135 ] } }, { "index": 1133, "index_chain": 1133, "chain_name": "2", "nt_resnum": 1286, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1286", "linked_nts": [ "///2/1285", "///2/1287" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart", "alpha": -88.770, "beta": 175.504, "gamma": 118.352, "delta": 146.838, "epsilon": -137.673, "zeta": -167.299, "epsilon_zeta": 29.626, "bb_type": "--", "chi": -119.005, "glyco_bond": "anti", "C5prime_xyz": [ -1.948, 8.545, -1.244 ], "P_xyz": [ 0.434, 8.808, -2.329 ], "form": ".", "ssZp": 1.796, "Dp": 1.763, "splay_angle": 47.081, "splay_distance": 7.661, "splay_ratio": 0.401, "d22": null, "d64": null, "eta": -160.032, "theta": 163.254, "eta_prime": -92.397, "theta_prime": 152.898, "eta_base": -107.287, "theta_base": 160.072, "v0": -21.000, "v1": 35.197, "v2": -35.149, "v3": 23.922, "v4": -2.023, "amplitude": 36.498, "phase_angle": 164.376, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 228.115, 202.684, 282.180 ], "x_axis": [ 0.109, 0.166, 0.980 ], "y_axis": [ 0.880, 0.442, -0.173 ], "z_axis": [ -0.461, 0.882, -0.098 ], "quaternion": [ 0.603, -0.437, -0.598, -0.296 ] } }, { "index": 1134, "index_chain": 1134, "chain_name": "2", "nt_resnum": 1287, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1287", "linked_nts": [ "///2/1286", "///2/1288" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -133.059, "beta": -172.101, "gamma": 62.306, "delta": 81.891, "epsilon": -172.824, "zeta": 20.652, "epsilon_zeta": 166.524, "bb_type": "--", "chi": -150.869, "glyco_bond": "anti", "C5prime_xyz": [ -1.234, 8.720, -0.012 ], "P_xyz": [ 1.363, 9.072, -0.026 ], "form": ".", "ssZp": 4.178, "Dp": 4.445, "splay_angle": 44.171, "splay_distance": 7.755, "splay_ratio": 0.388, "d22": null, "d64": null, "eta": 152.949, "theta": -84.058, "eta_prime": 136.954, "theta_prime": -95.661, "eta_base": 149.323, "theta_base": -83.289, "v0": 3.544, "v1": -25.077, "v2": 35.927, "v3": -34.850, "v4": 19.754, "amplitude": 36.905, "phase_angle": 13.224, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.108, "filter_rmsd": 0.040, "frame": { "rmsd": 0.004, "origin": [ 225.376, 202.893, 275.029 ], "x_axis": [ 0.086, 0.155, 0.984 ], "y_axis": [ 0.899, 0.414, -0.144 ], "z_axis": [ -0.429, 0.897, -0.104 ], "quaternion": [ 0.591, -0.441, -0.598, -0.315 ] } }, { "index": 1135, "index_chain": 1135, "chain_name": "2", "nt_resnum": 1288, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1288", "linked_nts": [ "///2/1287", "///2/1289" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -165.703, "beta": 119.965, "gamma": 176.738, "delta": 83.044, "epsilon": -109.745, "zeta": -74.974, "epsilon_zeta": -34.771, "bb_type": "--", "chi": -176.770, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.458, 1.519 ], "P_xyz": [ -1.264, 10.936, 0.680 ], "form": ".", "ssZp": 4.594, "Dp": 4.700, "splay_angle": 36.383, "splay_distance": 5.597, "splay_ratio": 0.312, "d22": 3.735, "d64": 3.560, "eta": -169.247, "theta": -168.275, "eta_prime": -146.552, "theta_prime": -151.072, "eta_base": -104.512, "theta_base": -89.726, "v0": 3.009, "v1": -23.931, "v2": 34.579, "v3": -33.819, "v4": 19.468, "amplitude": 35.623, "phase_angle": 13.905, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 224.149, 208.616, 280.116 ], "x_axis": [ 0.655, 0.484, 0.580 ], "y_axis": [ 0.636, 0.062, -0.769 ], "z_axis": [ -0.408, 0.873, -0.267 ], "quaternion": [ 0.602, -0.682, -0.410, -0.063 ] } }, { "index": 1136, "index_chain": 1136, "chain_name": "2", "nt_resnum": 1289, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1289", "linked_nts": [ "///2/1288", "///2/1290" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.560, "beta": 159.231, "gamma": 53.419, "delta": 82.455, "epsilon": -154.645, "zeta": -86.269, "epsilon_zeta": -68.376, "bb_type": "BI", "chi": -168.277, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.559, 1.030 ], "P_xyz": [ 1.359, 8.657, 1.103 ], "form": ".", "ssZp": 4.569, "Dp": 4.615, "splay_angle": 26.341, "splay_distance": 4.008, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 149.617, "theta": -158.754, "eta_prime": -179.964, "theta_prime": -161.323, "eta_base": -104.341, "theta_base": -156.184, "v0": 4.836, "v1": -26.118, "v2": 36.293, "v3": -34.503, "v4": 18.722, "amplitude": 37.008, "phase_angle": 11.276, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.284, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 226.352, 213.755, 279.868 ], "x_axis": [ 0.934, 0.006, -0.356 ], "y_axis": [ -0.327, -0.383, -0.864 ], "z_axis": [ -0.141, 0.924, -0.355 ], "quaternion": [ 0.547, -0.817, 0.098, 0.152 ] } }, { "index": 1137, "index_chain": 1137, "chain_name": "2", "nt_resnum": 1290, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1290", "linked_nts": [ "///2/1289", "///2/1291" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -69.077, "beta": 171.582, "gamma": 57.430, "delta": 81.500, "epsilon": -152.090, "zeta": -60.885, "epsilon_zeta": -91.205, "bb_type": "BI", "chi": -171.901, "glyco_bond": "anti", "C5prime_xyz": [ -1.184, 8.534, 1.218 ], "P_xyz": [ 1.425, 8.698, 1.454 ], "form": ".", "ssZp": 4.654, "Dp": 4.668, "splay_angle": 23.578, "splay_distance": 4.233, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 167.657, "theta": -112.929, "eta_prime": 173.233, "theta_prime": -122.163, "eta_base": -168.875, "theta_base": -99.415, "v0": 5.788, "v1": -27.389, "v2": 37.425, "v3": -35.110, "v4": 18.521, "amplitude": 38.011, "phase_angle": 10.070, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.807, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 225.129, 217.348, 281.158 ], "x_axis": [ 0.768, -0.227, -0.599 ], "y_axis": [ -0.639, -0.334, -0.693 ], "z_axis": [ -0.043, 0.915, -0.402 ], "quaternion": [ 0.508, -0.791, 0.274, 0.203 ] } }, { "index": 1138, "index_chain": 1138, "chain_name": "2", "nt_resnum": 1291, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1291", "linked_nts": [ "///2/1290", "///2/1292" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 174.459, "beta": -177.918, "gamma": 176.372, "delta": 81.860, "epsilon": -173.310, "zeta": -102.900, "epsilon_zeta": -70.409, "bb_type": "BI", "chi": -140.320, "glyco_bond": "anti", "C5prime_xyz": [ -1.176, 8.677, -0.646 ], "P_xyz": [ -0.364, 9.894, -2.825 ], "form": ".", "ssZp": 3.831, "Dp": 4.444, "splay_angle": 53.268, "splay_distance": 8.257, "splay_ratio": 0.448, "d22": null, "d64": null, "eta": 177.686, "theta": 135.559, "eta_prime": -163.661, "theta_prime": 144.394, "eta_base": -119.842, "theta_base": 156.188, "v0": 3.302, "v1": -24.611, "v2": 35.400, "v3": -34.476, "v4": 19.685, "amplitude": 36.413, "phase_angle": 13.546, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.570, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 228.267, 219.946, 280.009 ], "x_axis": [ 0.356, 0.039, -0.934 ], "y_axis": [ -0.897, 0.296, -0.330 ], "z_axis": [ 0.263, 0.954, 0.140 ], "quaternion": [ 0.669, -0.480, 0.447, 0.349 ] } }, { "index": 1139, "index_chain": 1139, "chain_name": "2", "nt_resnum": 1292, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1292", "linked_nts": [ "///2/1291", "///2/1293" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -54.865, "beta": 175.109, "gamma": 57.693, "delta": 81.242, "epsilon": -137.853, "zeta": -45.429, "epsilon_zeta": -92.424, "bb_type": "BI", "chi": -158.683, "glyco_bond": "anti", "C5prime_xyz": [ -1.244, 8.747, 0.451 ], "P_xyz": [ 1.358, 9.066, 0.460 ], "form": ".", "ssZp": 4.377, "Dp": 4.710, "splay_angle": 43.409, "splay_distance": 6.472, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": -170.447, "theta": -106.233, "eta_prime": -177.831, "theta_prime": -118.990, "eta_base": 179.241, "theta_base": -74.383, "v0": 3.438, "v1": -25.334, "v2": 36.395, "v3": -35.434, "v4": 20.174, "amplitude": 37.425, "phase_angle": 13.473, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.852, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 228.306, 225.758, 285.873 ], "x_axis": [ 0.509, -0.081, -0.857 ], "y_axis": [ -0.861, -0.023, -0.509 ], "z_axis": [ 0.022, 0.996, -0.081 ], "quaternion": [ 0.593, -0.635, 0.371, 0.329 ] } }, { "index": 1140, "index_chain": 1140, "chain_name": "2", "nt_resnum": 1293, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1293", "linked_nts": [ "///2/1292", "///2/1294" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -168.304, "beta": 142.299, "gamma": -177.692, "delta": 79.077, "epsilon": -119.406, "zeta": -27.138, "epsilon_zeta": -92.268, "bb_type": "--", "chi": -25.531, "glyco_bond": "syn", "C5prime_xyz": [ -4.464, 4.412, -2.799 ], "P_xyz": [ -6.843, 3.438, -3.333 ], "form": ".", "ssZp": -4.573, "Dp": 4.816, "splay_angle": 21.257, "splay_distance": 3.880, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 178.492, "theta": -106.244, "eta_prime": -170.565, "theta_prime": -109.500, "eta_base": -111.361, "theta_base": -100.118, "v0": 3.819, "v1": -26.821, "v2": 38.424, "v3": -37.218, "v4": 21.066, "amplitude": 39.460, "phase_angle": 13.157, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.442, "filter_rmsd": 0.038, "frame": { "rmsd": 0.009, "origin": [ 228.386, 229.532, 280.616 ], "x_axis": [ 0.796, 0.512, -0.324 ], "y_axis": [ -0.078, 0.618, 0.782 ], "z_axis": [ 0.601, -0.597, 0.532 ], "quaternion": [ 0.858, 0.402, 0.270, 0.172 ] } }, { "index": 1141, "index_chain": 1141, "chain_name": "2", "nt_resnum": 1294, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1294", "linked_nts": [ "///2/1293", "///2/1295" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 157.701, "beta": 169.384, "gamma": 159.470, "delta": 82.923, "epsilon": -154.319, "zeta": -72.390, "epsilon_zeta": -81.929, "bb_type": "BI", "chi": 178.900, "glyco_bond": "anti", "C5prime_xyz": [ -1.437, 8.464, 1.727 ], "P_xyz": [ 0.184, 10.396, 1.001 ], "form": "A", "ssZp": 4.490, "Dp": 4.541, "splay_angle": 25.117, "splay_distance": 3.803, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 127.794, "theta": -172.977, "eta_prime": 167.382, "theta_prime": -164.518, "eta_base": -157.051, "theta_base": -138.594, "v0": 0.976, "v1": -21.948, "v2": 33.341, "v3": -33.724, "v4": 20.684, "amplitude": 34.875, "phase_angle": 17.056, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 228.108, 230.524, 276.875 ], "x_axis": [ -0.567, -0.801, 0.191 ], "y_axis": [ -0.388, 0.464, 0.796 ], "z_axis": [ -0.727, 0.377, -0.574 ], "quaternion": [ -0.284, -0.368, 0.807, 0.364 ] } }, { "index": 1142, "index_chain": 1142, "chain_name": "2", "nt_resnum": 1295, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1295", "linked_nts": [ "///2/1294", "///2/1296" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": -99.877, "beta": -146.240, "gamma": 51.870, "delta": 83.963, "epsilon": -167.577, "zeta": -82.643, "epsilon_zeta": -84.934, "bb_type": "BI", "chi": -165.821, "glyco_bond": "anti", "C5prime_xyz": [ -1.041, 8.538, 0.931 ], "P_xyz": [ 1.227, 8.479, 2.257 ], "form": ".", "ssZp": 4.429, "Dp": 4.486, "splay_angle": 41.576, "splay_distance": 6.462, "splay_ratio": 0.357, "d22": null, "d64": null, "eta": 158.802, "theta": -170.664, "eta_prime": 165.547, "theta_prime": -166.307, "eta_base": -162.705, "theta_base": -165.081, "v0": 5.922, "v1": -26.174, "v2": 35.391, "v3": -32.957, "v4": 17.086, "amplitude": 35.869, "phase_angle": 9.357, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.265, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 226.438, 231.087, 273.504 ], "x_axis": [ -0.298, -0.462, 0.835 ], "y_axis": [ 0.101, 0.855, 0.509 ], "z_axis": [ -0.949, 0.236, -0.208 ], "quaternion": [ 0.581, 0.118, -0.768, -0.242 ] } }, { "index": 1143, "index_chain": 1143, "chain_name": "2", "nt_resnum": 1296, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1296", "linked_nts": [ "///2/1295", "///2/1297" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop", "alpha": -62.893, "beta": -160.147, "gamma": 37.744, "delta": 80.459, "epsilon": -122.569, "zeta": -69.713, "epsilon_zeta": -52.856, "bb_type": "--", "chi": -169.462, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.610, 1.102 ], "P_xyz": [ 0.745, 9.047, 2.583 ], "form": ".", "ssZp": 4.554, "Dp": 4.735, "splay_angle": 38.073, "splay_distance": 5.851, "splay_ratio": 0.326, "d22": 3.685, "d64": 4.174, "eta": -177.409, "theta": -123.387, "eta_prime": 174.272, "theta_prime": -110.079, "eta_base": 167.732, "theta_base": -54.575, "v0": 2.774, "v1": -24.892, "v2": 36.369, "v3": -35.760, "v4": 20.785, "amplitude": 37.560, "phase_angle": 14.467, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.386, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 223.920, 231.720, 267.587 ], "x_axis": [ 0.068, -0.521, 0.851 ], "y_axis": [ 0.267, 0.831, 0.488 ], "z_axis": [ -0.961, 0.194, 0.196 ], "quaternion": [ 0.724, 0.102, -0.626, -0.272 ] } }, { "index": 1144, "index_chain": 1144, "chain_name": "2", "nt_resnum": 1297, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1297", "linked_nts": [ "///2/1296", "///2/1298" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -47.199, "beta": 152.712, "gamma": 54.283, "delta": 79.848, "epsilon": -94.730, "zeta": -126.600, "epsilon_zeta": 31.869, "bb_type": "--", "chi": -164.105, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.667, 0.778 ], "P_xyz": [ 1.248, 8.857, 0.555 ], "form": ".", "ssZp": 4.164, "Dp": 4.740, "splay_angle": 80.138, "splay_distance": 11.016, "splay_ratio": 0.649, "d22": null, "d64": null, "eta": 176.518, "theta": -100.698, "eta_prime": -156.940, "theta_prime": -142.502, "eta_base": -88.843, "theta_base": 140.616, "v0": 3.471, "v1": -25.830, "v2": 37.216, "v3": -36.193, "v4": 20.617, "amplitude": 38.275, "phase_angle": 13.505, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.455, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 221.566, 231.788, 272.943 ], "x_axis": [ 0.284, 0.498, 0.819 ], "y_axis": [ -0.014, 0.856, -0.516 ], "z_axis": [ -0.959, 0.135, 0.250 ], "quaternion": [ 0.773, -0.211, -0.575, 0.166 ] } }, { "index": 1145, "index_chain": 1145, "chain_name": "2", "nt_resnum": 1298, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1298", "linked_nts": [ "///2/1297", "///2/1299" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop", "alpha": 129.412, "beta": -110.539, "gamma": 55.124, "delta": 145.379, "epsilon": -94.147, "zeta": 137.222, "epsilon_zeta": 128.632, "bb_type": "BII", "chi": 126.648, "glyco_bond": "--", "C5prime_xyz": [ -3.495, 6.621, 3.086 ], "P_xyz": [ -4.704, 4.471, 3.958 ], "form": ".", "ssZp": -0.152, "Dp": 0.747, "splay_angle": 28.715, "splay_distance": 4.860, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 44.301, "theta": -178.798, "eta_prime": 76.652, "theta_prime": 167.803, "eta_base": 37.775, "theta_base": 156.349, "v0": -23.077, "v1": 36.267, "v2": -34.855, "v3": 22.450, "v4": 0.215, "amplitude": 36.882, "phase_angle": 160.918, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 215.381, 231.768, 263.828 ], "x_axis": [ -0.853, -0.273, -0.445 ], "y_axis": [ -0.516, 0.314, 0.797 ], "z_axis": [ -0.078, 0.909, -0.409 ], "quaternion": [ 0.114, -0.246, 0.803, 0.531 ] } }, { "index": 1146, "index_chain": 1146, "chain_name": "2", "nt_resnum": 1299, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1299", "linked_nts": [ "///2/1298", "///2/1300" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -40.461, "beta": 120.648, "gamma": -0.296, "delta": 79.295, "epsilon": -114.508, "zeta": -139.502, "epsilon_zeta": 24.994, "bb_type": "--", "chi": -102.815, "glyco_bond": "anti", "C5prime_xyz": [ -2.168, 7.853, -2.556 ], "P_xyz": [ 0.382, 8.183, -3.040 ], "form": ".", "ssZp": 0.474, "Dp": 4.731, "splay_angle": 125.982, "splay_distance": 17.285, "splay_ratio": 0.891, "d22": null, "d64": null, "eta": 172.345, "theta": -148.165, "eta_prime": 165.078, "theta_prime": 171.921, "eta_base": 161.371, "theta_base": 136.269, "v0": 0.834, "v1": -23.664, "v2": 36.253, "v3": -36.765, "v4": 22.662, "amplitude": 37.988, "phase_angle": 17.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 213.424, 229.628, 267.728 ], "x_axis": [ 0.927, -0.103, -0.360 ], "y_axis": [ 0.368, 0.430, 0.824 ], "z_axis": [ 0.070, -0.897, 0.436 ], "quaternion": [ 0.836, 0.515, 0.129, -0.141 ] } }, { "index": 1147, "index_chain": 1147, "chain_name": "2", "nt_resnum": 1300, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1300", "linked_nts": [ "///2/1299", "///2/1301" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 88.827, "beta": -118.258, "gamma": 62.192, "delta": 145.599, "epsilon": -128.750, "zeta": 42.661, "epsilon_zeta": 188.589, "bb_type": "--", "chi": -129.355, "glyco_bond": "anti", "C5prime_xyz": [ -1.788, 8.633, -0.725 ], "P_xyz": [ -0.140, 9.206, 1.238 ], "form": ".", "ssZp": 1.623, "Dp": 1.613, "splay_angle": 132.286, "splay_distance": 17.711, "splay_ratio": 0.915, "d22": null, "d64": null, "eta": 20.413, "theta": 78.707, "eta_prime": 34.908, "theta_prime": 51.359, "eta_base": 33.327, "theta_base": 3.899, "v0": -20.373, "v1": 34.221, "v2": -34.290, "v3": 23.407, "v4": -2.099, "amplitude": 35.569, "phase_angle": 164.591, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.244, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 211.518, 233.053, 284.563 ], "x_axis": [ 0.241, 0.944, 0.227 ], "y_axis": [ 0.616, 0.032, -0.787 ], "z_axis": [ -0.750, 0.330, -0.574 ], "quaternion": [ -0.418, 0.668, 0.584, -0.196 ] } }, { "index": 1148, "index_chain": 1148, "chain_name": "2", "nt_resnum": 1301, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1301", "linked_nts": [ "///2/1300", "///2/1302" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -176.972, "beta": -89.799, "gamma": -63.380, "delta": 79.502, "epsilon": -159.268, "zeta": -73.999, "epsilon_zeta": -85.269, "bb_type": "BI", "chi": 62.399, "glyco_bond": "syn", "C5prime_xyz": [ -5.240, 4.139, 1.864 ], "P_xyz": [ -7.749, 4.876, 2.109 ], "form": ".", "ssZp": -2.556, "Dp": 4.465, "splay_angle": 100.366, "splay_distance": 14.636, "splay_ratio": 0.779, "d22": null, "d64": null, "eta": 27.117, "theta": 163.724, "eta_prime": 23.038, "theta_prime": 160.092, "eta_base": 87.326, "theta_base": 177.478, "v0": -2.645, "v1": -20.243, "v2": 34.083, "v3": -36.577, "v4": 24.718, "amplitude": 36.922, "phase_angle": 22.616, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 219.433, 230.488, 268.928 ], "x_axis": [ 0.228, -0.181, -0.957 ], "y_axis": [ -0.423, -0.903, 0.070 ], "z_axis": [ -0.877, 0.389, -0.283 ], "quaternion": [ -0.103, 0.777, -0.194, -0.590 ] } }, { "index": 1149, "index_chain": 1149, "chain_name": "2", "nt_resnum": 1302, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1302", "linked_nts": [ "///2/1301", "///2/1303" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,splayed-apart", "alpha": 176.978, "beta": -159.903, "gamma": -58.052, "delta": 148.124, "epsilon": -140.277, "zeta": 167.512, "epsilon_zeta": 52.211, "bb_type": "BII", "chi": -112.903, "glyco_bond": "anti", "C5prime_xyz": [ -1.973, 8.418, -1.523 ], "P_xyz": [ -1.710, 10.967, -2.102 ], "form": ".", "ssZp": 1.695, "Dp": 1.720, "splay_angle": 84.662, "splay_distance": 11.808, "splay_ratio": 0.682, "d22": null, "d64": null, "eta": -30.777, "theta": 110.708, "eta_prime": -21.363, "theta_prime": 92.183, "eta_base": -75.285, "theta_base": 37.514, "v0": -20.241, "v1": 35.109, "v2": -35.731, "v3": 24.967, "v4": -3.166, "amplitude": 36.809, "phase_angle": 166.099, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 229.280, 223.466, 277.171 ], "x_axis": [ 0.102, 0.212, 0.972 ], "y_axis": [ -0.978, 0.199, 0.059 ], "z_axis": [ -0.181, -0.957, 0.227 ], "quaternion": [ 0.618, 0.411, -0.467, 0.481 ] } }, { "index": 1150, "index_chain": 1150, "chain_name": "2", "nt_resnum": 1303, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1303", "linked_nts": [ "///2/1302", "///2/1304" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -76.190, "beta": 132.637, "gamma": -51.356, "delta": 82.685, "epsilon": -176.097, "zeta": -81.551, "epsilon_zeta": -94.547, "bb_type": "BI", "chi": 36.433, "glyco_bond": "syn", "C5prime_xyz": [ -5.549, 3.827, 0.472 ], "P_xyz": [ -6.970, 2.156, -0.965 ], "form": ".", "ssZp": -3.886, "Dp": 4.273, "splay_angle": 35.846, "splay_distance": 5.413, "splay_ratio": 0.310, "d22": 4.822, "d64": 5.422, "eta": 68.428, "theta": -157.030, "eta_prime": 49.227, "theta_prime": -146.093, "eta_base": 45.325, "theta_base": -158.185, "v0": -0.758, "v1": -20.561, "v2": 32.800, "v3": -34.171, "v4": 22.034, "amplitude": 34.867, "phase_angle": 19.830, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 220.481, 229.604, 272.238 ], "x_axis": [ 0.259, 0.941, -0.216 ], "y_axis": [ 0.503, -0.323, -0.802 ], "z_axis": [ -0.825, 0.099, -0.557 ], "quaternion": [ -0.308, 0.731, 0.494, -0.356 ] } }, { "index": 1151, "index_chain": 1151, "chain_name": "2", "nt_resnum": 1304, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1304", "linked_nts": [ "///2/1303", "///2/1305" ], "nt_type": "RNA", "dbn": ")", "summary": "u-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 170.554, "beta": -133.837, "gamma": 151.764, "delta": 82.634, "epsilon": -103.363, "zeta": -96.649, "epsilon_zeta": -6.714, "bb_type": "--", "chi": -164.238, "glyco_bond": "anti", "C5prime_xyz": [ -1.225, 8.639, 0.794 ], "P_xyz": [ 0.878, 9.016, -0.726 ], "form": ".", "ssZp": 4.250, "Dp": 4.725, "splay_angle": 27.653, "splay_distance": 4.406, "splay_ratio": 0.240, "d22": 4.346, "d64": 3.521, "eta": 175.076, "theta": -138.142, "eta_prime": -166.883, "theta_prime": -140.395, "eta_base": 179.014, "theta_base": -113.803, "v0": 3.507, "v1": -24.536, "v2": 35.043, "v3": -33.991, "v4": 19.244, "amplitude": 35.986, "phase_angle": 13.147, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.048, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 225.451, 231.704, 272.671 ], "x_axis": [ -0.585, -0.214, 0.782 ], "y_axis": [ 0.087, -0.976, -0.202 ], "z_axis": [ 0.807, -0.050, 0.589 ], "quaternion": [ -0.085, 0.448, -0.071, 0.887 ] } }, { "index": 1152, "index_chain": 1152, "chain_name": "2", "nt_resnum": 1305, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1305", "linked_nts": [ "///2/1304", "///2/1306" ], "nt_type": "RNA", "dbn": ")", "summary": "u-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -69.191, "beta": 159.527, "gamma": 51.318, "delta": 80.644, "epsilon": -136.573, "zeta": -76.660, "epsilon_zeta": -59.913, "bb_type": "BI", "chi": -159.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.149, 8.719, 0.491 ], "P_xyz": [ 1.463, 8.841, 0.292 ], "form": ".", "ssZp": 4.410, "Dp": 4.744, "splay_angle": 41.534, "splay_distance": 6.622, "splay_ratio": 0.356, "d22": 4.929, "d64": 5.574, "eta": 151.029, "theta": -138.524, "eta_prime": 166.009, "theta_prime": -135.838, "eta_base": -152.340, "theta_base": -119.878, "v0": 4.315, "v1": -26.390, "v2": 37.258, "v3": -35.766, "v4": 19.816, "amplitude": 38.125, "phase_angle": 12.241, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.095, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 227.545, 230.892, 276.461 ], "x_axis": [ -0.765, -0.643, 0.020 ], "y_axis": [ 0.513, -0.628, -0.585 ], "z_axis": [ 0.389, -0.437, 0.811 ], "quaternion": [ -0.323, 0.114, -0.285, 0.895 ] } }, { "index": 1153, "index_chain": 1153, "chain_name": "2", "nt_resnum": 1306, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1306", "linked_nts": [ "///2/1305", "///2/1307" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -60.098, "beta": -169.491, "gamma": 50.398, "delta": 81.135, "epsilon": -144.237, "zeta": -67.342, "epsilon_zeta": -76.895, "bb_type": "BI", "chi": -168.452, "glyco_bond": "anti", "C5prime_xyz": [ -1.675, 8.727, 0.982 ], "P_xyz": [ 0.621, 9.381, 2.064 ], "form": ".", "ssZp": 4.478, "Dp": 4.561, "splay_angle": 31.371, "splay_distance": 4.713, "splay_ratio": 0.273, "d22": 4.516, "d64": 3.225, "eta": -178.860, "theta": -103.321, "eta_prime": -171.152, "theta_prime": -102.170, "eta_base": -147.762, "theta_base": -30.882, "v0": -1.622, "v1": -20.488, "v2": 33.456, "v3": -35.349, "v4": 23.331, "amplitude": 35.870, "phase_angle": 21.140, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.817, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 228.045, 227.607, 282.189 ], "x_axis": [ -0.641, -0.446, -0.625 ], "y_axis": [ 0.690, 0.024, -0.724 ], "z_axis": [ 0.338, -0.894, 0.293 ], "quaternion": [ -0.411, -0.104, -0.585, 0.691 ] } }, { "index": 1154, "index_chain": 1154, "chain_name": "2", "nt_resnum": 1307, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1307", "linked_nts": [ "///2/1306", "///2/1308" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -162.018, "beta": -133.357, "gamma": 107.243, "delta": 83.930, "epsilon": -112.270, "zeta": -166.969, "epsilon_zeta": 54.698, "bb_type": "BII", "chi": -119.629, "glyco_bond": "anti", "C5prime_xyz": [ -1.733, 8.317, -1.806 ], "P_xyz": [ 0.594, 7.746, -2.881 ], "form": ".", "ssZp": 1.786, "Dp": 4.666, "splay_angle": 28.604, "splay_distance": 4.886, "splay_ratio": 0.263, "d22": 4.972, "d64": 4.319, "eta": 149.476, "theta": -162.453, "eta_prime": 179.707, "theta_prime": -169.890, "eta_base": -98.211, "theta_base": -178.662, "v0": 1.784, "v1": -22.533, "v2": 33.526, "v3": -33.415, "v4": 19.996, "amplitude": 34.834, "phase_angle": 15.746, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.005, "origin": [ 228.689, 225.067, 278.272 ], "x_axis": [ 0.363, -0.018, -0.932 ], "y_axis": [ 0.882, -0.315, 0.350 ], "z_axis": [ -0.300, -0.949, -0.098 ], "quaternion": [ 0.487, 0.666, 0.324, -0.462 ] } }, { "index": 1155, "index_chain": 1155, "chain_name": "2", "nt_resnum": 1308, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1308", "linked_nts": [ "///2/1307", "///2/1309" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 97.471, "beta": -95.441, "gamma": 167.009, "delta": 83.052, "epsilon": 167.824, "zeta": -87.090, "epsilon_zeta": -105.086, "bb_type": "BI", "chi": -140.147, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.691, -0.645 ], "P_xyz": [ -0.316, 7.915, -2.949 ], "form": ".", "ssZp": 3.751, "Dp": 4.171, "splay_angle": 26.754, "splay_distance": 4.386, "splay_ratio": 0.232, "d22": 5.007, "d64": 5.329, "eta": 139.322, "theta": -149.680, "eta_prime": 171.742, "theta_prime": 169.258, "eta_base": 177.437, "theta_base": 161.938, "v0": 2.775, "v1": -23.458, "v2": 34.024, "v3": -33.349, "v4": 19.338, "amplitude": 35.093, "phase_angle": 14.178, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 228.334, 220.586, 280.188 ], "x_axis": [ 0.302, 0.062, -0.951 ], "y_axis": [ 0.889, -0.379, 0.257 ], "z_axis": [ -0.344, -0.923, -0.170 ], "quaternion": [ 0.434, 0.680, 0.350, -0.476 ] } }, { "index": 1156, "index_chain": 1156, "chain_name": "2", "nt_resnum": 1309, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1309", "linked_nts": [ "///2/1308", "///2/1310" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 169.284, "beta": -152.932, "gamma": 159.343, "delta": 84.943, "epsilon": -163.885, "zeta": -70.309, "epsilon_zeta": -93.576, "bb_type": "BI", "chi": -171.822, "glyco_bond": "anti", "C5prime_xyz": [ -1.188, 8.586, 1.248 ], "P_xyz": [ 0.934, 9.583, 0.062 ], "form": ".", "ssZp": 4.374, "Dp": 4.431, "splay_angle": 31.245, "splay_distance": 4.733, "splay_ratio": 0.269, "d22": 4.356, "d64": 4.089, "eta": 165.598, "theta": -130.356, "eta_prime": 174.070, "theta_prime": -135.615, "eta_base": -173.175, "theta_base": -88.751, "v0": 2.555, "v1": -22.451, "v2": 32.630, "v3": -32.089, "v4": 18.686, "amplitude": 33.687, "phase_angle": 14.391, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.186, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 224.984, 218.106, 281.553 ], "x_axis": [ 0.446, 0.020, -0.895 ], "y_axis": [ 0.811, -0.431, 0.395 ], "z_axis": [ -0.378, -0.902, -0.209 ], "quaternion": [ 0.449, 0.722, 0.288, -0.441 ] } }, { "index": 1157, "index_chain": 1157, "chain_name": "2", "nt_resnum": 1310, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1310", "linked_nts": [ "///2/1309", "///2/1311" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -169.451, "beta": -134.895, "gamma": 122.783, "delta": 83.515, "epsilon": -108.334, "zeta": -118.767, "epsilon_zeta": 10.434, "bb_type": "--", "chi": -165.882, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.674, 0.882 ], "P_xyz": [ 1.102, 8.703, 0.239 ], "form": ".", "ssZp": 4.309, "Dp": 4.654, "splay_angle": 27.646, "splay_distance": 4.373, "splay_ratio": 0.244, "d22": 5.060, "d64": 3.697, "eta": 163.239, "theta": -106.699, "eta_prime": -172.394, "theta_prime": -119.891, "eta_base": -107.943, "theta_base": -123.595, "v0": 1.160, "v1": -22.194, "v2": 33.533, "v3": -33.810, "v4": 20.634, "amplitude": 35.021, "phase_angle": 16.765, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 225.260, 214.353, 278.682 ], "x_axis": [ 0.931, -0.319, -0.178 ], "y_axis": [ 0.083, -0.291, 0.953 ], "z_axis": [ -0.356, -0.902, -0.245 ], "quaternion": [ 0.590, 0.785, -0.075, -0.170 ] } }, { "index": 1158, "index_chain": 1158, "chain_name": "2", "nt_resnum": 1311, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1311", "linked_nts": [ "///2/1310", "///2/1312" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,helix,internal-loop,phosphate", "alpha": -157.604, "beta": -129.109, "gamma": 88.159, "delta": 85.075, "epsilon": -141.866, "zeta": -101.477, "epsilon_zeta": -40.389, "bb_type": "BI", "chi": -145.672, "glyco_bond": "anti", "C5prime_xyz": [ -1.164, 8.743, -0.303 ], "P_xyz": [ 1.436, 8.370, -0.161 ], "form": ".", "ssZp": 3.864, "Dp": 4.605, "splay_angle": 37.185, "splay_distance": 5.793, "splay_ratio": 0.326, "d22": null, "d64": null, "eta": 121.577, "theta": -144.882, "eta_prime": 141.926, "theta_prime": -136.680, "eta_base": 156.582, "theta_base": -110.732, "v0": 2.919, "v1": -23.073, "v2": 33.303, "v3": -32.569, "v4": 18.756, "amplitude": 34.305, "phase_angle": 13.882, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 224.057, 210.297, 277.573 ], "x_axis": [ 0.575, 0.682, 0.453 ], "y_axis": [ -0.380, -0.268, 0.886 ], "z_axis": [ 0.725, -0.681, 0.105 ], "quaternion": [ 0.594, 0.659, 0.115, 0.447 ] } }, { "index": 1159, "index_chain": 1159, "chain_name": "2", "nt_resnum": 1312, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1312", "linked_nts": [ "///2/1311", "///2/1313" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -29.525, "beta": 147.466, "gamma": 77.091, "delta": 150.079, "epsilon": -90.702, "zeta": -178.989, "epsilon_zeta": 88.288, "bb_type": "BII", "chi": -109.002, "glyco_bond": "anti", "C5prime_xyz": [ -1.814, 8.275, -1.677 ], "P_xyz": [ 0.743, 7.950, -2.200 ], "form": ".", "ssZp": 0.420, "Dp": 0.751, "splay_angle": 46.293, "splay_distance": 7.663, "splay_ratio": 0.398, "d22": null, "d64": null, "eta": -129.826, "theta": 171.114, "eta_prime": -103.376, "theta_prime": 168.664, "eta_base": -92.322, "theta_base": -163.898, "v0": -16.936, "v1": 32.972, "v2": -35.570, "v3": 26.694, "v4": -6.327, "amplitude": 35.990, "phase_angle": 171.231, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.052, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 228.429, 207.322, 279.935 ], "x_axis": [ 0.262, 0.427, 0.866 ], "y_axis": [ -0.575, -0.651, 0.495 ], "z_axis": [ 0.775, -0.627, 0.075 ], "quaternion": [ 0.414, 0.678, -0.055, 0.605 ] } }, { "index": 1160, "index_chain": 1160, "chain_name": "2", "nt_resnum": 1313, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1313", "linked_nts": [ "///2/1312", "///2/1314" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-donor", "alpha": -114.260, "beta": 166.456, "gamma": 62.727, "delta": 148.672, "epsilon": -69.254, "zeta": 94.703, "epsilon_zeta": 196.043, "bb_type": "--", "chi": -127.779, "glyco_bond": "anti", "C5prime_xyz": [ -1.656, 8.601, -0.753 ], "P_xyz": [ 0.882, 8.921, -0.145 ], "form": ".", "ssZp": 0.066, "Dp": 0.304, "splay_angle": 26.167, "splay_distance": 4.742, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": -149.906, "theta": 119.814, "eta_prime": -151.452, "theta_prime": 80.653, "eta_base": -138.418, "theta_base": 68.930, "v0": -18.953, "v1": 34.322, "v2": -35.763, "v3": 25.733, "v4": -4.457, "amplitude": 36.541, "phase_angle": 168.154, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 229.980, 201.504, 275.195 ], "x_axis": [ 0.278, 0.283, 0.918 ], "y_axis": [ -0.876, -0.317, 0.363 ], "z_axis": [ 0.394, -0.905, 0.160 ], "quaternion": [ 0.529, 0.599, -0.248, 0.547 ] } }, { "index": 1161, "index_chain": 1161, "chain_name": "2", "nt_resnum": 1314, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1314", "linked_nts": [ "///2/1313", "///2/1315" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,~C3'-endo,BI,non-stack,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor,phosphate", "alpha": 177.259, "beta": 164.313, "gamma": 64.024, "delta": 82.393, "epsilon": -169.218, "zeta": -92.118, "epsilon_zeta": -77.100, "bb_type": "BI", "chi": 105.236, "glyco_bond": "--", "C5prime_xyz": [ -3.897, 5.824, 3.227 ], "P_xyz": [ -2.684, 4.497, 5.135 ], "form": ".", "ssZp": 0.174, "Dp": 4.295, "splay_angle": 38.494, "splay_distance": 5.594, "splay_ratio": 0.336, "d22": 8.484, "d64": 9.802, "eta": 105.690, "theta": -132.193, "eta_prime": 102.822, "theta_prime": -127.677, "eta_base": 118.557, "theta_base": -131.654, "v0": 0.533, "v1": -21.793, "v2": 33.490, "v3": -34.212, "v4": 21.240, "amplitude": 35.177, "phase_angle": 17.817, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.220, "filter_rmsd": 0.115, "frame": { "rmsd": 0.015, "origin": [ 225.435, 202.826, 274.908 ], "x_axis": [ 0.101, 0.034, 0.994 ], "y_axis": [ -0.990, -0.094, 0.104 ], "z_axis": [ 0.097, -0.995, 0.025 ], "quaternion": [ 0.508, 0.541, -0.442, 0.504 ] } }, { "index": 1162, "index_chain": 1162, "chain_name": "2", "nt_resnum": 1315, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1315", "linked_nts": [ "///2/1314", "///2/1316" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -175.412, "beta": -116.303, "gamma": 161.307, "delta": 82.663, "epsilon": -131.948, "zeta": -56.192, "epsilon_zeta": -75.756, "bb_type": "BI", "chi": -153.113, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.711, 0.111 ], "P_xyz": [ 0.236, 8.667, -2.000 ], "form": ".", "ssZp": 4.131, "Dp": 4.717, "splay_angle": 47.593, "splay_distance": 7.458, "splay_ratio": 0.403, "d22": 3.822, "d64": 4.396, "eta": -166.299, "theta": -116.542, "eta_prime": -145.259, "theta_prime": -124.401, "eta_base": -137.005, "theta_base": -94.563, "v0": 3.626, "v1": -24.907, "v2": 35.508, "v3": -34.432, "v4": 19.454, "amplitude": 36.451, "phase_angle": 13.061, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.011, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 229.191, 204.463, 271.099 ], "x_axis": [ 0.346, -0.835, -0.427 ], "y_axis": [ -0.880, -0.131, -0.456 ], "z_axis": [ 0.325, 0.534, -0.780 ], "quaternion": [ -0.330, 0.751, -0.571, -0.034 ] } }, { "index": 1163, "index_chain": 1163, "chain_name": "2", "nt_resnum": 1316, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1316", "linked_nts": [ "///2/1315", "///2/1317" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -74.394, "beta": -170.217, "gamma": 57.227, "delta": 82.126, "epsilon": -151.430, "zeta": -73.367, "epsilon_zeta": -78.063, "bb_type": "BI", "chi": -164.852, "glyco_bond": "anti", "C5prime_xyz": [ -1.260, 8.709, 0.822 ], "P_xyz": [ 1.269, 9.021, 1.459 ], "form": "A", "ssZp": 4.508, "Dp": 4.607, "splay_angle": 26.672, "splay_distance": 4.190, "splay_ratio": 0.232, "d22": 4.767, "d64": 4.930, "eta": 166.504, "theta": -147.513, "eta_prime": -168.630, "theta_prime": -144.153, "eta_base": -115.525, "theta_base": -119.636, "v0": 2.817, "v1": -24.350, "v2": 35.405, "v3": -34.736, "v4": 20.132, "amplitude": 36.531, "phase_angle": 14.264, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.674, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 230.032, 202.025, 264.102 ], "x_axis": [ -0.710, -0.705, -0.011 ], "y_axis": [ -0.678, 0.679, 0.282 ], "z_axis": [ -0.191, 0.208, -0.959 ], "quaternion": [ -0.049, -0.378, 0.915, 0.134 ] } }, { "index": 1164, "index_chain": 1164, "chain_name": "2", "nt_resnum": 1317, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1317", "linked_nts": [ "///2/1316", "///2/1318" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.659, "beta": 175.042, "gamma": 60.336, "delta": 81.447, "epsilon": -147.312, "zeta": -92.794, "epsilon_zeta": -54.518, "bb_type": "BI", "chi": -159.841, "glyco_bond": "anti", "C5prime_xyz": [ -1.276, 8.769, 0.512 ], "P_xyz": [ 1.324, 9.129, 0.532 ], "form": "A", "ssZp": 4.418, "Dp": 4.639, "splay_angle": 20.970, "splay_distance": 3.328, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 174.013, "theta": -130.501, "eta_prime": -173.124, "theta_prime": -139.408, "eta_base": -137.646, "theta_base": -116.576, "v0": 2.359, "v1": -24.179, "v2": 35.575, "v3": -35.191, "v4": 20.713, "amplitude": 36.833, "phase_angle": 15.014, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.907, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 229.848, 201.391, 259.963 ], "x_axis": [ -0.959, -0.242, 0.145 ], "y_axis": [ -0.204, 0.951, 0.234 ], "z_axis": [ -0.194, 0.195, -0.961 ], "quaternion": [ -0.086, -0.113, 0.984, 0.109 ] } }, { "index": 1165, "index_chain": 1165, "chain_name": "2", "nt_resnum": 1318, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1318", "linked_nts": [ "///2/1317", "///2/1319" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 177.055, "beta": -153.887, "gamma": 138.041, "delta": 83.209, "epsilon": -143.660, "zeta": -76.423, "epsilon_zeta": -67.237, "bb_type": "BI", "chi": 177.897, "glyco_bond": "anti", "C5prime_xyz": [ -1.400, 8.353, 1.802 ], "P_xyz": [ 1.044, 9.100, 1.220 ], "form": "A", "ssZp": 4.605, "Dp": 4.645, "splay_angle": 22.411, "splay_distance": 3.479, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 140.612, "theta": -148.139, "eta_prime": 159.730, "theta_prime": -150.899, "eta_base": -156.958, "theta_base": -134.365, "v0": 3.806, "v1": -24.488, "v2": 34.679, "v3": -33.489, "v4": 18.748, "amplitude": 35.540, "phase_angle": 12.644, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 228.421, 200.812, 257.014 ], "x_axis": [ -0.594, 0.222, 0.773 ], "y_axis": [ 0.350, 0.937, -0.001 ], "z_axis": [ -0.725, 0.270, -0.634 ], "quaternion": [ -0.421, 0.161, 0.889, 0.076 ] } }, { "index": 1166, "index_chain": 1166, "chain_name": "2", "nt_resnum": 1319, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1319", "linked_nts": [ "///2/1318", "///2/1320" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -73.577, "beta": -172.705, "gamma": 51.085, "delta": 83.148, "epsilon": -161.752, "zeta": -96.941, "epsilon_zeta": -64.811, "bb_type": "BI", "chi": -157.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.176, 8.668, 0.423 ], "P_xyz": [ 1.380, 8.967, 0.949 ], "form": "A", "ssZp": 4.358, "Dp": 4.537, "splay_angle": 27.602, "splay_distance": 4.352, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 165.324, "theta": -133.837, "eta_prime": 176.445, "theta_prime": -133.663, "eta_base": -152.143, "theta_base": -105.178, "v0": 4.456, "v1": -25.195, "v2": 35.223, "v3": -33.644, "v4": 18.426, "amplitude": 35.969, "phase_angle": 11.685, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.863, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 225.658, 199.670, 255.235 ], "x_axis": [ -0.244, 0.701, 0.670 ], "y_axis": [ 0.547, 0.670, -0.502 ], "z_axis": [ -0.801, 0.244, -0.547 ], "quaternion": [ -0.469, 0.398, 0.784, -0.082 ] } }, { "index": 1167, "index_chain": 1167, "chain_name": "2", "nt_resnum": 1320, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1320", "linked_nts": [ "///2/1319", "///2/1321" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 162.616, "beta": -125.512, "gamma": 160.528, "delta": 82.622, "epsilon": -126.889, "zeta": -67.983, "epsilon_zeta": -58.906, "bb_type": "--", "chi": -174.658, "glyco_bond": "anti", "C5prime_xyz": [ -1.519, 8.577, 1.385 ], "P_xyz": [ 0.580, 9.266, -0.022 ], "form": ".", "ssZp": 4.606, "Dp": 4.673, "splay_angle": 36.200, "splay_distance": 5.509, "splay_ratio": 0.311, "d22": null, "d64": null, "eta": 168.329, "theta": -127.158, "eta_prime": -170.924, "theta_prime": -129.178, "eta_base": -126.122, "theta_base": -77.116, "v0": 1.688, "v1": -23.070, "v2": 34.425, "v3": -34.436, "v4": 20.685, "amplitude": 35.811, "phase_angle": 15.991, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.112, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 221.649, 201.275, 254.691 ], "x_axis": [ 0.115, 0.951, 0.287 ], "y_axis": [ 0.547, 0.180, -0.818 ], "z_axis": [ -0.829, 0.251, -0.499 ], "quaternion": [ -0.446, 0.599, 0.625, -0.227 ] } }, { "index": 1168, "index_chain": 1168, "chain_name": "2", "nt_resnum": 1321, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1321", "linked_nts": [ "///2/1320", "///2/1322" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -58.422, "beta": 157.146, "gamma": 56.728, "delta": 83.336, "epsilon": -147.027, "zeta": -78.203, "epsilon_zeta": -68.824, "bb_type": "BI", "chi": -163.625, "glyco_bond": "anti", "C5prime_xyz": [ -1.110, 8.636, 0.765 ], "P_xyz": [ 1.504, 8.631, 0.530 ], "form": "A", "ssZp": 4.531, "Dp": 4.673, "splay_angle": 25.160, "splay_distance": 3.908, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 159.176, "theta": -143.518, "eta_prime": -169.877, "theta_prime": -145.661, "eta_base": -88.829, "theta_base": -126.311, "v0": 5.660, "v1": -26.479, "v2": 36.112, "v3": -33.831, "v4": 17.796, "amplitude": 36.663, "phase_angle": 9.946, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.668, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 220.205, 206.081, 252.419 ], "x_axis": [ 0.492, 0.578, -0.651 ], "y_axis": [ 0.081, -0.775, -0.627 ], "z_axis": [ -0.867, 0.256, -0.428 ], "quaternion": [ -0.269, 0.821, 0.201, -0.462 ] } }, { "index": 1169, "index_chain": 1169, "chain_name": "2", "nt_resnum": 1322, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1322", "linked_nts": [ "///2/1321", "///2/1323" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -63.204, "beta": 160.014, "gamma": 64.566, "delta": 81.425, "epsilon": -155.858, "zeta": -74.612, "epsilon_zeta": -81.246, "bb_type": "BI", "chi": -170.721, "glyco_bond": "anti", "C5prime_xyz": [ -1.413, 8.611, 1.155 ], "P_xyz": [ 1.182, 8.950, 0.981 ], "form": "A", "ssZp": 4.600, "Dp": 4.610, "splay_angle": 25.176, "splay_distance": 3.929, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 168.461, "theta": -149.284, "eta_prime": -174.201, "theta_prime": -152.302, "eta_base": -133.921, "theta_base": -137.476, "v0": 3.609, "v1": -25.511, "v2": 36.505, "v3": -35.416, "v4": 20.074, "amplitude": 37.497, "phase_angle": 13.209, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.732, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 217.232, 208.380, 251.346 ], "x_axis": [ 0.479, 0.126, -0.869 ], "y_axis": [ -0.162, -0.960, -0.229 ], "z_axis": [ -0.863, 0.251, -0.439 ], "quaternion": [ -0.141, 0.848, -0.011, -0.510 ] } }, { "index": 1170, "index_chain": 1170, "chain_name": "2", "nt_resnum": 1323, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1323", "linked_nts": [ "///2/1322", "///2/1324" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -61.722, "beta": 174.772, "gamma": 55.787, "delta": 80.850, "epsilon": -151.279, "zeta": -75.793, "epsilon_zeta": -75.487, "bb_type": "BI", "chi": -168.070, "glyco_bond": "anti", "C5prime_xyz": [ -1.434, 8.646, 1.002 ], "P_xyz": [ 1.123, 9.045, 1.431 ], "form": "A", "ssZp": 4.553, "Dp": 4.610, "splay_angle": 22.491, "splay_distance": 3.508, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 174.422, "theta": -149.412, "eta_prime": -174.757, "theta_prime": -149.089, "eta_base": -144.700, "theta_base": -123.298, "v0": 2.249, "v1": -24.327, "v2": 35.929, "v3": -35.630, "v4": 21.044, "amplitude": 37.237, "phase_angle": 15.227, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.947, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 214.700, 211.257, 250.481 ], "x_axis": [ 0.351, -0.332, -0.875 ], "y_axis": [ -0.354, -0.913, 0.204 ], "z_axis": [ -0.867, 0.239, -0.438 ], "quaternion": [ -0.011, 0.822, -0.209, -0.530 ] } }, { "index": 1171, "index_chain": 1171, "chain_name": "2", "nt_resnum": 1324, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1324", "linked_nts": [ "///2/1323", "///2/1325" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -61.244, "beta": 168.776, "gamma": 52.320, "delta": 79.740, "epsilon": -137.927, "zeta": -70.519, "epsilon_zeta": -67.408, "bb_type": "BI", "chi": -169.137, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.638, 1.052 ], "P_xyz": [ 1.244, 8.965, 1.322 ], "form": "A", "ssZp": 4.638, "Dp": 4.737, "splay_angle": 27.164, "splay_distance": 4.349, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 168.745, "theta": -134.756, "eta_prime": 179.948, "theta_prime": -131.859, "eta_base": -139.992, "theta_base": -100.375, "v0": 3.831, "v1": -26.251, "v2": 37.516, "v3": -36.328, "v4": 20.493, "amplitude": 38.508, "phase_angle": 13.039, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.964, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 212.725, 213.253, 248.378 ], "x_axis": [ 0.129, -0.775, -0.618 ], "y_axis": [ -0.502, -0.589, 0.633 ], "z_axis": [ -0.855, 0.229, -0.465 ], "quaternion": [ 0.137, 0.739, -0.432, -0.499 ] } }, { "index": 1172, "index_chain": 1172, "chain_name": "2", "nt_resnum": 1325, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1325", "linked_nts": [ "///2/1324", "///2/1326" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": -58.934, "beta": 170.144, "gamma": 56.560, "delta": 78.164, "epsilon": -101.842, "zeta": -155.960, "epsilon_zeta": 54.117, "bb_type": "BII", "chi": -162.083, "glyco_bond": "anti", "C5prime_xyz": [ -1.582, 8.808, 0.606 ], "P_xyz": [ 0.954, 9.445, 0.598 ], "form": ".", "ssZp": 4.156, "Dp": 4.740, "splay_angle": 154.917, "splay_distance": 15.841, "splay_ratio": 0.977, "d22": null, "d64": null, "eta": -178.673, "theta": -178.272, "eta_prime": -164.940, "theta_prime": 157.121, "eta_base": -121.669, "theta_base": -106.784, "v0": 0.497, "v1": -23.890, "v2": 36.920, "v3": -37.677, "v4": 23.446, "amplitude": 38.802, "phase_angle": 17.916, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.902, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 210.609, 212.893, 244.595 ], "x_axis": [ -0.171, -0.983, -0.061 ], "y_axis": [ -0.526, 0.039, 0.849 ], "z_axis": [ -0.833, 0.178, -0.524 ], "quaternion": [ -0.293, -0.573, 0.659, 0.390 ] } }, { "index": 1173, "index_chain": 1173, "chain_name": "2", "nt_resnum": 1326, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1326", "linked_nts": [ "///2/1325", "///2/1327" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,bulge,cap-acceptor,splayed-apart", "alpha": 64.118, "beta": -142.082, "gamma": 45.699, "delta": 144.371, "epsilon": -126.606, "zeta": 75.098, "epsilon_zeta": 158.296, "bb_type": "--", "chi": 45.337, "glyco_bond": "syn", "C5prime_xyz": [ -5.544, 3.918, 0.476 ], "P_xyz": [ -6.252, 2.213, -1.391 ], "form": ".", "ssZp": -1.520, "Dp": 1.550, "splay_angle": 95.552, "splay_distance": 15.621, "splay_ratio": 0.741, "d22": null, "d64": null, "eta": -14.730, "theta": 99.950, "eta_prime": -2.553, "theta_prime": 61.404, "eta_base": -111.008, "theta_base": 38.391, "v0": -22.807, "v1": 35.998, "v2": -34.721, "v3": 22.462, "v4": 0.008, "amplitude": 36.675, "phase_angle": 161.214, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.528, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 196.718, 217.442, 250.699 ], "x_axis": [ -0.810, 0.505, 0.298 ], "y_axis": [ 0.428, 0.857, -0.287 ], "z_axis": [ -0.401, -0.104, -0.910 ], "quaternion": [ -0.185, 0.247, 0.946, -0.103 ] } }, { "index": 1174, "index_chain": 1174, "chain_name": "2", "nt_resnum": 1327, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1327", "linked_nts": [ "///2/1326", "///2/1328" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": 48.362, "beta": 136.541, "gamma": 171.628, "delta": 81.139, "epsilon": -142.788, "zeta": -73.331, "epsilon_zeta": -69.458, "bb_type": "BI", "chi": -174.992, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.533, 1.398 ], "P_xyz": [ -0.929, 10.941, 0.465 ], "form": "A", "ssZp": 4.672, "Dp": 4.687, "splay_angle": 22.864, "splay_distance": 3.726, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 60.168, "theta": 171.304, "eta_prime": 57.697, "theta_prime": -175.338, "eta_base": 96.803, "theta_base": -147.766, "v0": 3.646, "v1": -25.450, "v2": 36.371, "v3": -35.291, "v4": 19.953, "amplitude": 37.350, "phase_angle": 13.148, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6j", "suiteness": 0.452, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 208.856, 213.486, 241.698 ], "x_axis": [ -0.545, -0.695, 0.469 ], "y_axis": [ -0.327, 0.691, 0.645 ], "z_axis": [ -0.772, 0.198, -0.604 ], "quaternion": [ -0.368, -0.303, 0.843, 0.250 ] } }, { "index": 1175, "index_chain": 1175, "chain_name": "2", "nt_resnum": 1328, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1328", "linked_nts": [ "///2/1327", "///2/1329" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.800, "beta": -174.521, "gamma": 45.597, "delta": 81.013, "epsilon": -146.058, "zeta": -88.783, "epsilon_zeta": -57.275, "bb_type": "BI", "chi": -160.331, "glyco_bond": "anti", "C5prime_xyz": [ -1.498, 8.796, 0.547 ], "P_xyz": [ 0.934, 9.436, 1.284 ], "form": "A", "ssZp": 4.397, "Dp": 4.611, "splay_angle": 26.145, "splay_distance": 4.115, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 166.577, "theta": -159.491, "eta_prime": 176.302, "theta_prime": -154.082, "eta_base": -153.474, "theta_base": -131.840, "v0": 0.845, "v1": -22.867, "v2": 34.933, "v3": -35.466, "v4": 21.821, "amplitude": 36.597, "phase_angle": 17.343, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.847, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 206.932, 212.137, 238.806 ], "x_axis": [ -0.423, -0.250, 0.871 ], "y_axis": [ -0.047, 0.966, 0.255 ], "z_axis": [ -0.905, 0.067, -0.420 ], "quaternion": [ 0.530, 0.089, -0.838, -0.096 ] } }, { "index": 1176, "index_chain": 1176, "chain_name": "2", "nt_resnum": 1329, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1329", "linked_nts": [ "///2/1328", "///2/1330" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.746, "beta": 160.486, "gamma": 57.763, "delta": 81.242, "epsilon": -125.044, "zeta": -77.865, "epsilon_zeta": -47.179, "bb_type": "--", "chi": -158.663, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.731, 0.445 ], "P_xyz": [ 1.191, 9.052, 0.166 ], "form": ".", "ssZp": 4.273, "Dp": 4.730, "splay_angle": 52.568, "splay_distance": 9.195, "splay_ratio": 0.451, "d22": null, "d64": null, "eta": 178.410, "theta": -91.897, "eta_prime": -173.873, "theta_prime": -99.861, "eta_base": -147.898, "theta_base": -100.027, "v0": 2.304, "v1": -24.308, "v2": 35.869, "v3": -35.542, "v4": 20.967, "amplitude": 37.161, "phase_angle": 15.154, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.707, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 203.493, 211.155, 236.772 ], "x_axis": [ -0.390, 0.198, 0.899 ], "y_axis": [ 0.109, 0.980, -0.169 ], "z_axis": [ -0.914, 0.032, -0.404 ], "quaternion": [ 0.544, -0.092, -0.833, 0.041 ] } }, { "index": 1177, "index_chain": 1177, "chain_name": "2", "nt_resnum": 1330, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1330", "linked_nts": [ "///2/1329", "///2/1331" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": 107.570, "beta": 146.784, "gamma": -71.044, "delta": 144.736, "epsilon": -126.514, "zeta": 105.694, "epsilon_zeta": 127.792, "bb_type": "--", "chi": -97.622, "glyco_bond": "anti", "C5prime_xyz": [ -2.450, 8.029, -2.235 ], "P_xyz": [ -2.215, 10.612, -2.666 ], "form": ".", "ssZp": 1.372, "Dp": 1.549, "splay_angle": 176.594, "splay_distance": 17.005, "splay_ratio": 1.000, "d22": null, "d64": null, "eta": -160.728, "theta": 89.956, "eta_prime": -138.510, "theta_prime": 58.915, "eta_base": -129.669, "theta_base": -23.447, "v0": -22.946, "v1": 36.169, "v2": -34.878, "v3": 22.541, "v4": 0.047, "amplitude": 36.852, "phase_angle": 161.163, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 194.532, 212.678, 238.160 ], "x_axis": [ 0.068, 0.519, 0.852 ], "y_axis": [ 0.436, 0.753, -0.493 ], "z_axis": [ -0.897, 0.405, -0.175 ], "quaternion": [ 0.642, -0.350, -0.682, 0.032 ] } }, { "index": 1178, "index_chain": 1178, "chain_name": "2", "nt_resnum": 1331, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1331", "linked_nts": [ "///2/1330", "///2/1332" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": 53.971, "beta": -155.243, "gamma": 48.789, "delta": 143.379, "epsilon": -135.634, "zeta": 142.422, "epsilon_zeta": 81.944, "bb_type": "--", "chi": 54.765, "glyco_bond": "syn", "C5prime_xyz": [ -5.540, 4.303, 0.990 ], "P_xyz": [ -6.452, 2.184, -0.256 ], "form": ".", "ssZp": -1.736, "Dp": 1.740, "splay_angle": 156.874, "splay_distance": 18.759, "splay_ratio": 0.980, "d22": null, "d64": null, "eta": -12.977, "theta": 142.964, "eta_prime": -2.325, "theta_prime": 113.310, "eta_base": 77.016, "theta_base": 18.042, "v0": -24.675, "v1": 37.085, "v2": -34.613, "v3": 21.321, "v4": 1.908, "amplitude": 37.247, "phase_angle": 158.322, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.344, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 198.280, 219.781, 223.171 ], "x_axis": [ 0.491, 0.230, -0.840 ], "y_axis": [ 0.624, -0.766, 0.156 ], "z_axis": [ -0.608, -0.601, -0.520 ], "quaternion": [ 0.227, 0.833, 0.256, -0.434 ] } }, { "index": 1179, "index_chain": 1179, "chain_name": "2", "nt_resnum": 1332, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1332", "linked_nts": [ "///2/1331", "///2/1333" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate,splayed-apart", "alpha": 38.558, "beta": -166.531, "gamma": 57.115, "delta": 81.833, "epsilon": -157.365, "zeta": -64.034, "epsilon_zeta": -93.331, "bb_type": "BI", "chi": -145.280, "glyco_bond": "anti", "C5prime_xyz": [ -1.173, 8.651, -0.357 ], "P_xyz": [ 1.428, 8.969, -0.341 ], "form": ".", "ssZp": 3.995, "Dp": 4.614, "splay_angle": 27.878, "splay_distance": 4.924, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": -35.215, "theta": -111.801, "eta_prime": -42.163, "theta_prime": -118.266, "eta_base": 55.052, "theta_base": -96.358, "v0": 5.206, "v1": -26.704, "v2": 36.925, "v3": -34.897, "v4": 18.743, "amplitude": 37.594, "phase_angle": 10.826, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 201.461, 207.346, 236.852 ], "x_axis": [ -0.149, 0.848, 0.508 ], "y_axis": [ 0.026, 0.517, -0.855 ], "z_axis": [ -0.988, -0.114, -0.099 ], "quaternion": [ 0.563, -0.329, -0.664, 0.365 ] } }, { "index": 1180, "index_chain": 1180, "chain_name": "2", "nt_resnum": 1333, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1333", "linked_nts": [ "///2/1332", "///2/1334" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": 147.441, "beta": -158.730, "gamma": -170.104, "delta": 80.914, "epsilon": -148.377, "zeta": -79.094, "epsilon_zeta": -69.283, "bb_type": "BI", "chi": -164.539, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.665, 0.797 ], "P_xyz": [ -0.273, 10.491, -0.742 ], "form": ".", "ssZp": 4.534, "Dp": 4.652, "splay_angle": 34.397, "splay_distance": 5.369, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 172.294, "theta": 177.031, "eta_prime": -165.853, "theta_prime": -175.476, "eta_base": -121.169, "theta_base": -151.848, "v0": 3.153, "v1": -25.180, "v2": 36.463, "v3": -35.605, "v4": 20.468, "amplitude": 37.561, "phase_angle": 13.884, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.759, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 197.687, 209.512, 239.155 ], "x_axis": [ -0.014, 1.000, -0.005 ], "y_axis": [ -0.038, -0.005, -0.999 ], "z_axis": [ -0.999, -0.014, 0.038 ], "quaternion": [ 0.505, -0.488, -0.493, 0.514 ] } }, { "index": 1181, "index_chain": 1181, "chain_name": "2", "nt_resnum": 1334, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1334", "linked_nts": [ "///2/1333", "///2/1335" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -59.643, "beta": -178.039, "gamma": 49.489, "delta": 81.017, "epsilon": -135.034, "zeta": -69.097, "epsilon_zeta": -65.936, "bb_type": "BI", "chi": -175.426, "glyco_bond": "anti", "C5prime_xyz": [ -1.568, 8.575, 1.412 ], "P_xyz": [ 0.819, 8.947, 2.425 ], "form": ".", "ssZp": 4.644, "Dp": 4.679, "splay_angle": 28.609, "splay_distance": 4.404, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 178.611, "theta": -131.328, "eta_prime": -175.767, "theta_prime": -125.306, "eta_base": -150.513, "theta_base": -71.223, "v0": 1.544, "v1": -23.618, "v2": 35.457, "v3": -35.565, "v4": 21.454, "amplitude": 36.937, "phase_angle": 16.274, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 192.716, 209.670, 241.178 ], "x_axis": [ 0.345, 0.853, -0.392 ], "y_axis": [ 0.239, -0.484, -0.842 ], "z_axis": [ -0.908, 0.197, -0.371 ], "quaternion": [ -0.350, 0.742, 0.368, -0.438 ] } }, { "index": 1182, "index_chain": 1182, "chain_name": "2", "nt_resnum": 1335, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1335", "linked_nts": [ "///2/1334", "///2/1336" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop", "alpha": -59.476, "beta": 163.087, "gamma": 53.820, "delta": 81.918, "epsilon": -139.545, "zeta": -71.464, "epsilon_zeta": -68.081, "bb_type": "BI", "chi": -167.389, "glyco_bond": "anti", "C5prime_xyz": [ -1.299, 8.660, 0.977 ], "P_xyz": [ 1.309, 8.866, 1.147 ], "form": "A", "ssZp": 4.568, "Dp": 4.685, "splay_angle": 27.148, "splay_distance": 4.246, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 163.742, "theta": -133.114, "eta_prime": -173.163, "theta_prime": -131.407, "eta_base": -99.557, "theta_base": -92.967, "v0": 3.510, "v1": -24.974, "v2": 35.791, "v3": -34.759, "v4": 19.721, "amplitude": 36.774, "phase_angle": 13.279, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.859, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 190.920, 212.668, 238.500 ], "x_axis": [ 0.398, 0.103, -0.912 ], "y_axis": [ -0.171, -0.968, -0.184 ], "z_axis": [ -0.901, 0.229, -0.368 ], "quaternion": [ -0.125, 0.827, -0.020, -0.548 ] } }, { "index": 1183, "index_chain": 1183, "chain_name": "2", "nt_resnum": 1336, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1336", "linked_nts": [ "///2/1335", "///2/1337" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -56.884, "beta": 164.125, "gamma": 54.622, "delta": 79.896, "epsilon": -141.830, "zeta": -74.469, "epsilon_zeta": -67.361, "bb_type": "BI", "chi": -165.412, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.727, 0.840 ], "P_xyz": [ 1.287, 9.037, 0.917 ], "form": "A", "ssZp": 4.547, "Dp": 4.688, "splay_angle": 23.627, "splay_distance": 3.794, "splay_ratio": 0.207, "d22": 3.959, "d64": 4.129, "eta": 168.126, "theta": -140.387, "eta_prime": -171.959, "theta_prime": -139.764, "eta_base": -113.308, "theta_base": -112.348, "v0": 2.227, "v1": -24.751, "v2": 36.661, "v3": -36.387, "v4": 21.522, "amplitude": 38.014, "phase_angle": 15.331, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.891, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 188.792, 214.072, 235.105 ], "x_axis": [ 0.202, -0.612, -0.764 ], "y_axis": [ -0.422, -0.759, 0.496 ], "z_axis": [ -0.884, 0.222, -0.412 ], "quaternion": [ 0.089, 0.770, -0.336, -0.535 ] } }, { "index": 1184, "index_chain": 1184, "chain_name": "2", "nt_resnum": 1337, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1337", "linked_nts": [ "///2/1336", "///2/1338" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge,phosphate", "alpha": -59.124, "beta": 167.826, "gamma": 53.729, "delta": 80.107, "epsilon": -157.351, "zeta": -76.056, "epsilon_zeta": -81.296, "bb_type": "BI", "chi": -166.663, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.785, 0.891 ], "P_xyz": [ 0.982, 9.319, 1.250 ], "form": "A", "ssZp": 4.472, "Dp": 4.521, "splay_angle": 23.885, "splay_distance": 3.804, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 166.441, "theta": -154.805, "eta_prime": -176.966, "theta_prime": -155.398, "eta_base": -131.817, "theta_base": -138.176, "v0": -0.842, "v1": -21.820, "v2": 34.851, "v3": -36.316, "v4": 23.431, "amplitude": 37.058, "phase_angle": 19.872, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 186.737, 214.855, 232.012 ], "x_axis": [ 0.118, -0.962, -0.247 ], "y_axis": [ -0.488, -0.273, 0.829 ], "z_axis": [ -0.865, 0.023, -0.502 ], "quaternion": [ 0.293, 0.688, -0.527, -0.404 ] } }, { "index": 1185, "index_chain": 1185, "chain_name": "2", "nt_resnum": 1338, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1338", "linked_nts": [ "///2/1337", "///2/1339" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,phosphate", "alpha": -64.254, "beta": 175.721, "gamma": 51.855, "delta": 81.777, "epsilon": -148.487, "zeta": -71.400, "epsilon_zeta": -77.086, "bb_type": "BI", "chi": -170.783, "glyco_bond": "anti", "C5prime_xyz": [ -1.562, 8.691, 1.150 ], "P_xyz": [ 0.904, 9.132, 1.922 ], "form": "A", "ssZp": 4.505, "Dp": 4.558, "splay_angle": 22.030, "splay_distance": 3.491, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 170.528, "theta": -142.668, "eta_prime": 179.056, "theta_prime": -139.935, "eta_base": -152.220, "theta_base": -105.227, "v0": 0.032, "v1": -21.839, "v2": 34.070, "v3": -34.989, "v4": 22.059, "amplitude": 35.936, "phase_angle": 18.546, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.929, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 184.867, 215.791, 228.834 ], "x_axis": [ 0.045, -0.971, 0.236 ], "y_axis": [ -0.442, 0.193, 0.876 ], "z_axis": [ -0.896, -0.144, -0.420 ], "quaternion": [ -0.452, -0.564, 0.626, 0.292 ] } }, { "index": 1186, "index_chain": 1186, "chain_name": "2", "nt_resnum": 1339, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1339", "linked_nts": [ "///2/1338", "///2/1340" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,bulge,cap-donor", "alpha": -61.050, "beta": 175.001, "gamma": 48.468, "delta": 82.840, "epsilon": -146.294, "zeta": -84.614, "epsilon_zeta": -61.680, "bb_type": "BI", "chi": -158.316, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.734, 0.442 ], "P_xyz": [ 1.130, 9.178, 0.876 ], "form": "A", "ssZp": 4.313, "Dp": 4.580, "splay_angle": 24.851, "splay_distance": 4.013, "splay_ratio": 0.216, "d22": 4.701, "d64": 4.952, "eta": 168.674, "theta": -152.440, "eta_prime": -176.582, "theta_prime": -150.838, "eta_base": -128.408, "theta_base": -136.899, "v0": 1.282, "v1": -22.427, "v2": 33.875, "v3": -34.089, "v4": 20.670, "amplitude": 35.345, "phase_angle": 16.585, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.941, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 182.661, 213.981, 226.824 ], "x_axis": [ -0.211, -0.631, 0.746 ], "y_axis": [ -0.430, 0.746, 0.509 ], "z_axis": [ -0.878, -0.213, -0.429 ], "quaternion": [ 0.526, 0.343, -0.772, -0.096 ] } }, { "index": 1187, "index_chain": 1187, "chain_name": "2", "nt_resnum": 1340, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1340", "linked_nts": [ "///2/1339", "///2/1341" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,bulge,junction-loop,phosphate", "alpha": -57.522, "beta": 160.166, "gamma": 58.840, "delta": 79.726, "epsilon": -139.460, "zeta": 42.302, "epsilon_zeta": 178.238, "bb_type": "--", "chi": -159.958, "glyco_bond": "anti", "C5prime_xyz": [ -1.738, 8.794, 0.455 ], "P_xyz": [ 0.785, 9.435, 0.215 ], "form": ".", "ssZp": 4.346, "Dp": 4.636, "splay_angle": 35.257, "splay_distance": 5.692, "splay_ratio": 0.304, "d22": 4.394, "d64": 5.154, "eta": 172.963, "theta": -14.596, "eta_prime": -176.573, "theta_prime": -55.617, "eta_base": -152.972, "theta_base": -82.336, "v0": -0.941, "v1": -21.942, "v2": 35.122, "v3": -36.682, "v4": 23.726, "amplitude": 37.384, "phase_angle": 20.030, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.783, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 180.188, 212.173, 224.231 ], "x_axis": [ -0.321, -0.306, 0.896 ], "y_axis": [ -0.366, 0.913, 0.181 ], "z_axis": [ -0.874, -0.270, -0.405 ], "quaternion": [ 0.545, 0.207, -0.812, 0.027 ] } }, { "index": 1188, "index_chain": 1188, "chain_name": "2", "nt_resnum": 1341, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1341", "linked_nts": [ "///2/1340", "///2/1342" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,phosphate", "alpha": 159.032, "beta": 165.589, "gamma": 40.683, "delta": 144.001, "epsilon": -99.517, "zeta": 117.556, "epsilon_zeta": 142.927, "bb_type": "--", "chi": -133.864, "glyco_bond": "anti", "C5prime_xyz": [ -1.877, 8.777, -0.538 ], "P_xyz": [ 0.339, 9.586, 0.606 ], "form": ".", "ssZp": 0.963, "Dp": 0.968, "splay_angle": 30.696, "splay_distance": 5.280, "splay_ratio": 0.265, "d22": 7.804, "d64": 8.676, "eta": 48.002, "theta": 161.328, "eta_prime": 106.618, "theta_prime": 143.720, "eta_base": 127.816, "theta_base": 160.612, "v0": -23.108, "v1": 36.087, "v2": -34.590, "v3": 22.134, "v4": 0.406, "amplitude": 36.670, "phase_angle": 160.611, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.673, "filter_rmsd": 0.062, "frame": { "rmsd": 0.001, "origin": [ 175.223, 210.832, 226.669 ], "x_axis": [ 0.471, -0.448, -0.760 ], "y_axis": [ -0.137, 0.814, -0.564 ], "z_axis": [ 0.872, 0.369, 0.322 ], "quaternion": [ 0.807, -0.289, 0.505, -0.096 ] } }, { "index": 1189, "index_chain": 1189, "chain_name": "2", "nt_resnum": 1342, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1342", "linked_nts": [ "///2/1341", "///2/1343" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,phosphate", "alpha": 64.763, "beta": -106.874, "gamma": -143.240, "delta": 147.458, "epsilon": -97.837, "zeta": 128.096, "epsilon_zeta": 134.067, "bb_type": "BII", "chi": -131.984, "glyco_bond": "anti", "C5prime_xyz": [ -1.846, 8.660, -0.566 ], "P_xyz": [ -0.825, 9.297, -2.903 ], "form": ".", "ssZp": 0.864, "Dp": 0.881, "splay_angle": 54.167, "splay_distance": 8.797, "splay_ratio": 0.457, "d22": 6.875, "d64": 7.077, "eta": -84.342, "theta": 44.554, "eta_prime": -116.321, "theta_prime": 62.092, "eta_base": -113.707, "theta_base": 72.940, "v0": -20.807, "v1": 35.285, "v2": -35.510, "v3": 24.414, "v4": -2.458, "amplitude": 36.757, "phase_angle": 165.031, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 171.872, 211.430, 230.705 ], "x_axis": [ 0.677, 0.182, 0.713 ], "y_axis": [ -0.139, 0.983, -0.119 ], "z_axis": [ -0.723, -0.018, 0.691 ], "quaternion": [ 0.915, -0.028, -0.392, 0.088 ] } }, { "index": 1190, "index_chain": 1190, "chain_name": "2", "nt_resnum": 1343, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1343", "linked_nts": [ "///2/1342", "///2/1344" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,junction-loop,cap-acceptor", "alpha": -158.374, "beta": 154.232, "gamma": 77.171, "delta": 81.264, "epsilon": -127.086, "zeta": -54.882, "epsilon_zeta": -72.204, "bb_type": "--", "chi": -161.730, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.697, 0.622 ], "P_xyz": [ 1.035, 9.093, -0.297 ], "form": ".", "ssZp": 4.409, "Dp": 4.746, "splay_angle": 41.001, "splay_distance": 6.422, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 144.308, "theta": -110.623, "eta_prime": 138.455, "theta_prime": -103.720, "eta_base": 143.551, "theta_base": -64.974, "v0": 3.080, "v1": -25.190, "v2": 36.498, "v3": -35.695, "v4": 20.578, "amplitude": 37.615, "phase_angle": 13.999, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.011, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 172.798, 213.366, 222.174 ], "x_axis": [ -0.110, -0.583, 0.805 ], "y_axis": [ -0.752, 0.578, 0.316 ], "z_axis": [ -0.650, -0.571, -0.502 ], "quaternion": [ -0.491, -0.451, 0.740, -0.086 ] } }, { "index": 1191, "index_chain": 1191, "chain_name": "2", "nt_resnum": 1344, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1344", "linked_nts": [ "///2/1343", "///2/1345" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop", "alpha": -63.842, "beta": 175.892, "gamma": 75.967, "delta": 149.627, "epsilon": -96.657, "zeta": 168.798, "epsilon_zeta": 94.545, "bb_type": "BII", "chi": -121.810, "glyco_bond": "anti", "C5prime_xyz": [ -2.151, 8.541, -1.067 ], "P_xyz": [ 0.385, 9.208, -0.842 ], "form": ".", "ssZp": 0.763, "Dp": 0.770, "splay_angle": 40.852, "splay_distance": 6.593, "splay_ratio": 0.355, "d22": null, "d64": null, "eta": -160.917, "theta": 177.247, "eta_prime": -115.345, "theta_prime": 163.517, "eta_base": -67.738, "theta_base": -141.674, "v0": -22.376, "v1": 37.444, "v2": -37.331, "v3": 25.386, "v4": -2.107, "amplitude": 38.780, "phase_angle": 164.286, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.386, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 168.476, 210.463, 225.932 ], "x_axis": [ -0.427, 0.485, 0.763 ], "y_axis": [ -0.478, 0.596, -0.646 ], "z_axis": [ -0.768, -0.641, -0.023 ], "quaternion": [ 0.535, -0.002, -0.715, 0.450 ] } }, { "index": 1192, "index_chain": 1192, "chain_name": "2", "nt_resnum": 1345, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1345", "linked_nts": [ "///2/1344", "///2/1346" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -78.809, "beta": 125.370, "gamma": 58.977, "delta": 81.398, "epsilon": -156.354, "zeta": -74.032, "epsilon_zeta": -82.323, "bb_type": "BI", "chi": -159.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.339, 8.776, 0.502 ], "P_xyz": [ 1.126, 8.539, -0.362 ], "form": "A", "ssZp": 4.405, "Dp": 4.572, "splay_angle": 24.373, "splay_distance": 3.870, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 173.237, "theta": -141.157, "eta_prime": -177.930, "theta_prime": -151.060, "eta_base": -118.647, "theta_base": -141.198, "v0": 2.284, "v1": -24.146, "v2": 35.583, "v3": -35.234, "v4": 20.781, "amplitude": 36.859, "phase_angle": 15.117, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.238, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 166.831, 205.328, 222.137 ], "x_axis": [ -0.983, 0.005, -0.186 ], "y_axis": [ 0.136, 0.700, -0.701 ], "z_axis": [ 0.127, -0.714, -0.689 ], "quaternion": [ 0.085, 0.038, 0.918, -0.385 ] } }, { "index": 1193, "index_chain": 1193, "chain_name": "2", "nt_resnum": 1346, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1346", "linked_nts": [ "///2/1345", "///2/1347" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -66.663, "beta": 173.763, "gamma": 59.095, "delta": 80.374, "epsilon": -148.577, "zeta": -75.055, "epsilon_zeta": -73.522, "bb_type": "BI", "chi": -157.111, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.753, 0.338 ], "P_xyz": [ 1.125, 9.249, 0.232 ], "form": ".", "ssZp": 4.356, "Dp": 4.643, "splay_angle": 31.998, "splay_distance": 5.121, "splay_ratio": 0.277, "d22": 5.257, "d64": 5.658, "eta": 172.280, "theta": -147.167, "eta_prime": -176.680, "theta_prime": -144.470, "eta_base": -147.964, "theta_base": -124.701, "v0": 2.028, "v1": -24.428, "v2": 36.279, "v3": -36.106, "v4": 21.474, "amplitude": 37.662, "phase_angle": 15.576, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.911, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 166.991, 201.695, 220.813 ], "x_axis": [ -0.825, 0.316, -0.469 ], "y_axis": [ 0.559, 0.576, -0.597 ], "z_axis": [ 0.081, -0.754, -0.651 ], "quaternion": [ 0.157, 0.250, 0.874, -0.387 ] } }, { "index": 1194, "index_chain": 1194, "chain_name": "2", "nt_resnum": 1347, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1347", "linked_nts": [ "///2/1346", "///2/1348" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -59.798, "beta": 175.713, "gamma": 63.225, "delta": 79.745, "epsilon": -147.808, "zeta": -58.385, "epsilon_zeta": -89.423, "bb_type": "BI", "chi": -148.823, "glyco_bond": "anti", "C5prime_xyz": [ -1.614, 8.820, -0.173 ], "P_xyz": [ 0.898, 9.454, -0.563 ], "form": ".", "ssZp": 4.048, "Dp": 4.604, "splay_angle": 29.231, "splay_distance": 4.609, "splay_ratio": 0.279, "d22": null, "d64": null, "eta": -177.113, "theta": -148.997, "eta_prime": -165.022, "theta_prime": -163.295, "eta_base": -137.080, "theta_base": -108.096, "v0": -0.451, "v1": -22.352, "v2": 35.352, "v3": -36.591, "v4": 23.361, "amplitude": 37.451, "phase_angle": 19.276, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.814, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 165.649, 197.704, 217.898 ], "x_axis": [ -0.446, 0.553, -0.704 ], "y_axis": [ 0.892, 0.338, -0.299 ], "z_axis": [ 0.073, -0.761, -0.644 ], "quaternion": [ 0.249, 0.464, 0.779, -0.340 ] } }, { "index": 1195, "index_chain": 1195, "chain_name": "2", "nt_resnum": 1348, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1348", "linked_nts": [ "///2/1347", "///2/1349" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -125.407, "beta": 115.224, "gamma": 142.004, "delta": 80.637, "epsilon": -139.288, "zeta": -57.542, "epsilon_zeta": -81.746, "bb_type": "BI", "chi": 12.529, "glyco_bond": "syn", "C5prime_xyz": [ -5.236, 3.498, -1.067 ], "P_xyz": [ -6.726, 2.529, 0.863 ], "form": ".", "ssZp": -4.651, "Dp": 4.719, "splay_angle": 40.499, "splay_distance": 5.820, "splay_ratio": 0.347, "d22": null, "d64": null, "eta": 171.615, "theta": -161.678, "eta_prime": 171.690, "theta_prime": -154.173, "eta_base": -113.130, "theta_base": -166.613, "v0": 4.315, "v1": -26.368, "v2": 37.173, "v3": -35.715, "v4": 19.811, "amplitude": 38.039, "phase_angle": 12.251, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.059, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 166.971, 196.036, 213.810 ], "x_axis": [ -0.965, -0.109, 0.237 ], "y_axis": [ 0.254, -0.599, 0.760 ], "z_axis": [ 0.059, 0.794, 0.606 ], "quaternion": [ -0.102, 0.083, 0.436, 0.890 ] } }, { "index": 1196, "index_chain": 1196, "chain_name": "2", "nt_resnum": 1349, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1349", "linked_nts": [ "///2/1348", "///2/1350" ], "nt_type": "RNA", "dbn": "(", "summary": "~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -71.734, "beta": -168.666, "gamma": 45.089, "delta": 80.098, "epsilon": -121.317, "zeta": -90.318, "epsilon_zeta": -30.999, "bb_type": "--", "chi": 167.349, "glyco_bond": "--", "C5prime_xyz": [ -1.401, 7.993, 2.325 ], "P_xyz": [ 0.774, 7.737, 3.775 ], "form": ".", "ssZp": 4.838, "Dp": 4.835, "splay_angle": 34.295, "splay_distance": 4.907, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 166.713, "theta": -143.859, "eta_prime": -176.283, "theta_prime": -134.047, "eta_base": -175.676, "theta_base": -98.451, "v0": 6.861, "v1": -28.723, "v2": 38.558, "v3": -35.597, "v4": 18.110, "amplitude": 39.005, "phase_angle": 8.683, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.701, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 163.692, 191.589, 211.982 ], "x_axis": [ 0.388, 0.889, -0.242 ], "y_axis": [ 0.740, -0.144, 0.658 ], "z_axis": [ 0.550, -0.434, -0.713 ], "quaternion": [ 0.364, 0.749, 0.544, 0.103 ] } }, { "index": 1197, "index_chain": 1197, "chain_name": "2", "nt_resnum": 1350, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1350", "linked_nts": [ "///2/1349", "///2/1351" ], "nt_type": "RNA", "dbn": "(", "summary": "~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -68.668, "beta": 170.342, "gamma": 61.088, "delta": 80.948, "epsilon": -154.838, "zeta": -41.406, "epsilon_zeta": -113.431, "bb_type": "BI", "chi": 165.779, "glyco_bond": "--", "C5prime_xyz": [ -1.413, 7.910, 2.370 ], "P_xyz": [ 1.112, 7.815, 3.078 ], "form": ".", "ssZp": 4.453, "Dp": 4.676, "splay_angle": 29.494, "splay_distance": 5.140, "splay_ratio": 0.285, "d22": null, "d64": null, "eta": 166.111, "theta": -114.666, "eta_prime": 178.929, "theta_prime": -128.332, "eta_base": -133.235, "theta_base": -123.361, "v0": 7.510, "v1": -29.333, "v2": 38.833, "v3": -35.466, "v4": 17.640, "amplitude": 39.191, "phase_angle": 7.749, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.473, "filter_rmsd": 0.109, "frame": { "rmsd": 0.010, "origin": [ 165.313, 190.728, 207.432 ], "x_axis": [ 0.580, 0.692, 0.430 ], "y_axis": [ 0.090, -0.578, 0.811 ], "z_axis": [ 0.810, -0.431, -0.397 ], "quaternion": [ 0.389, 0.799, 0.245, 0.388 ] } }, { "index": 1198, "index_chain": 1198, "chain_name": "2", "nt_resnum": 1351, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1351", "linked_nts": [ "///2/1350", "///2/1352" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -163.713, "beta": 152.871, "gamma": 164.869, "delta": 79.046, "epsilon": -142.455, "zeta": -77.292, "epsilon_zeta": -65.163, "bb_type": "BI", "chi": 117.757, "glyco_bond": "--", "C5prime_xyz": [ -3.636, 6.562, 3.197 ], "P_xyz": [ -2.920, 8.525, 4.803 ], "form": "Z", "ssZp": 1.690, "Dp": 4.541, "splay_angle": 23.266, "splay_distance": 3.630, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 176.736, "theta": -164.560, "eta_prime": -170.900, "theta_prime": -178.309, "eta_base": -133.957, "theta_base": 102.142, "v0": -3.177, "v1": -20.906, "v2": 35.457, "v3": -38.325, "v4": 26.134, "amplitude": 38.571, "phase_angle": 23.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.313, "filter_rmsd": 0.018, "frame": { "rmsd": 0.018, "origin": [ 167.573, 192.042, 203.006 ], "x_axis": [ 0.185, 0.696, 0.694 ], "y_axis": [ -0.486, -0.549, 0.680 ], "z_axis": [ 0.854, -0.463, 0.237 ], "quaternion": [ 0.467, 0.612, 0.086, 0.633 ] } }, { "index": 1199, "index_chain": 1199, "chain_name": "2", "nt_resnum": 1352, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1352", "linked_nts": [ "///2/1351", "///2/1353" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -172.073, "beta": 179.368, "gamma": 102.526, "delta": 81.338, "epsilon": -110.047, "zeta": -120.937, "epsilon_zeta": 10.891, "bb_type": "--", "chi": 148.533, "glyco_bond": "anti", "C5prime_xyz": [ -2.257, 7.605, 2.961 ], "P_xyz": [ 0.058, 8.037, 4.110 ], "form": ".", "ssZp": 4.114, "Dp": 4.606, "splay_angle": 63.995, "splay_distance": 8.712, "splay_ratio": 0.531, "d22": null, "d64": null, "eta": 111.430, "theta": -158.077, "eta_prime": 125.835, "theta_prime": -144.972, "eta_base": 62.098, "theta_base": -135.758, "v0": -0.477, "v1": -21.271, "v2": 33.609, "v3": -34.823, "v4": 22.264, "amplitude": 35.618, "phase_angle": 19.334, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 164.222, 193.436, 203.054 ], "x_axis": [ -0.317, -0.252, 0.914 ], "y_axis": [ -0.239, -0.912, -0.334 ], "z_axis": [ 0.918, -0.324, 0.229 ], "quaternion": [ -0.004, 0.585, -0.210, 0.784 ] } }, { "index": 1200, "index_chain": 1200, "chain_name": "2", "nt_resnum": 1353, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1353", "linked_nts": [ "///2/1352", "///2/1354" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate", "alpha": -32.981, "beta": 100.137, "gamma": 101.654, "delta": 82.358, "epsilon": -164.430, "zeta": 59.354, "epsilon_zeta": 136.216, "bb_type": "--", "chi": 102.902, "glyco_bond": "--", "C5prime_xyz": [ -3.740, 5.507, 3.305 ], "P_xyz": [ -1.493, 6.417, 4.335 ], "form": ".", "ssZp": 0.439, "Dp": 4.505, "splay_angle": 18.313, "splay_distance": 3.820, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": -170.890, "theta": 2.860, "eta_prime": -133.755, "theta_prime": -50.095, "eta_base": -98.294, "theta_base": -46.214, "v0": 3.479, "v1": -25.326, "v2": 36.278, "v3": -35.290, "v4": 20.104, "amplitude": 37.293, "phase_angle": 13.396, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.048, "frame": { "rmsd": 0.018, "origin": [ 172.182, 194.993, 199.875 ], "x_axis": [ 0.177, -0.232, 0.956 ], "y_axis": [ -0.867, -0.496, 0.040 ], "z_axis": [ 0.465, -0.837, -0.289 ], "quaternion": [ 0.313, 0.700, -0.392, 0.507 ] } }, { "index": 1201, "index_chain": 1201, "chain_name": "2", "nt_resnum": 1354, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1354", "linked_nts": [ "///2/1353", "///2/1355" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C2'-endo,BI,non-canonical,non-pair-contact,internal-loop", "alpha": 61.240, "beta": 173.267, "gamma": 164.565, "delta": 145.672, "epsilon": -162.199, "zeta": -94.855, "epsilon_zeta": -67.344, "bb_type": "BI", "chi": -111.171, "glyco_bond": "anti", "C5prime_xyz": [ -2.305, 8.419, -1.612 ], "P_xyz": [ -1.049, 9.072, -3.821 ], "form": ".", "ssZp": 2.287, "Dp": 2.198, "splay_angle": 82.056, "splay_distance": 12.032, "splay_ratio": 0.657, "d22": null, "d64": null, "eta": 87.203, "theta": -136.072, "eta_prime": 141.412, "theta_prime": 170.388, "eta_base": -147.926, "theta_base": 129.422, "v0": -23.921, "v1": 37.417, "v2": -35.766, "v3": 22.866, "v4": 0.448, "amplitude": 37.936, "phase_angle": 160.528, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "5q", "suiteness": 0.053, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 174.642, 192.377, 201.178 ], "x_axis": [ -0.711, -0.321, 0.626 ], "y_axis": [ -0.601, -0.185, -0.778 ], "z_axis": [ 0.366, -0.929, -0.061 ], "quaternion": [ 0.103, 0.366, -0.630, 0.677 ] } }, { "index": 1202, "index_chain": 1202, "chain_name": "2", "nt_resnum": 1355, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1355", "linked_nts": [ "///2/1354", "///2/1356" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": 148.971, "beta": 144.685, "gamma": 46.127, "delta": 82.967, "epsilon": -157.919, "zeta": -70.718, "epsilon_zeta": -87.201, "bb_type": "BI", "chi": -158.103, "glyco_bond": "anti", "C5prime_xyz": [ -1.225, 8.748, 0.418 ], "P_xyz": [ 1.396, 8.672, 0.243 ], "form": ".", "ssZp": 4.362, "Dp": 4.552, "splay_angle": 29.086, "splay_distance": 4.433, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": -8.286, "theta": -111.239, "eta_prime": 25.614, "theta_prime": -115.528, "eta_base": 35.945, "theta_base": -65.762, "v0": 2.845, "v1": -23.976, "v2": 34.753, "v3": -34.087, "v4": 19.726, "amplitude": 35.842, "phase_angle": 14.163, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 182.887, 193.808, 192.533 ], "x_axis": [ -0.469, 0.819, -0.331 ], "y_axis": [ -0.857, -0.512, -0.054 ], "z_axis": [ -0.214, 0.258, 0.942 ], "quaternion": [ 0.490, -0.159, 0.060, 0.855 ] } }, { "index": 1203, "index_chain": 1203, "chain_name": "2", "nt_resnum": 1356, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1356", "linked_nts": [ "///2/1355", "///2/1357" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate", "alpha": -159.960, "beta": -137.488, "gamma": 116.593, "delta": 83.479, "epsilon": -153.894, "zeta": -91.407, "epsilon_zeta": -62.487, "bb_type": "BI", "chi": -139.137, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.719, -0.690 ], "P_xyz": [ 1.094, 8.342, -1.759 ], "form": ".", "ssZp": 3.673, "Dp": 4.546, "splay_angle": 24.795, "splay_distance": 3.997, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 151.983, "theta": -155.421, "eta_prime": -178.896, "theta_prime": -162.957, "eta_base": -107.754, "theta_base": -154.212, "v0": 2.623, "v1": -23.277, "v2": 33.923, "v3": -33.366, "v4": 19.420, "amplitude": 35.030, "phase_angle": 14.441, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 179.388, 196.282, 193.669 ], "x_axis": [ -0.932, -0.027, -0.361 ], "y_axis": [ -0.218, -0.755, 0.619 ], "z_axis": [ -0.289, 0.656, 0.697 ], "quaternion": [ 0.052, -0.177, 0.347, 0.920 ] } }, { "index": 1204, "index_chain": 1204, "chain_name": "2", "nt_resnum": 1357, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1357", "linked_nts": [ "///2/1356", "///2/1358" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,cap-donor,phosphate", "alpha": -53.253, "beta": 155.140, "gamma": 57.017, "delta": 83.725, "epsilon": -101.220, "zeta": -49.515, "epsilon_zeta": -51.706, "bb_type": "--", "chi": -145.075, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.696, -0.366 ], "P_xyz": [ 1.225, 8.736, -1.086 ], "form": ".", "ssZp": 3.338, "Dp": 4.711, "splay_angle": 63.208, "splay_distance": 9.964, "splay_ratio": 0.525, "d22": null, "d64": null, "eta": -174.284, "theta": -83.755, "eta_prime": -169.887, "theta_prime": -71.358, "eta_base": -153.763, "theta_base": -42.603, "v0": 3.053, "v1": -24.115, "v2": 34.770, "v3": -33.964, "v4": 19.554, "amplitude": 35.809, "phase_angle": 13.833, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.592, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 178.777, 199.065, 196.471 ], "x_axis": [ -0.947, -0.284, -0.153 ], "y_axis": [ 0.068, -0.640, 0.765 ], "z_axis": [ -0.315, 0.714, 0.625 ], "quaternion": [ -0.098, -0.131, 0.413, 0.896 ] } }, { "index": 1205, "index_chain": 1205, "chain_name": "2", "nt_resnum": 1358, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1358", "linked_nts": [ "///2/1357", "///2/1359" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,cap-acceptor", "alpha": -65.270, "beta": 141.081, "gamma": 94.574, "delta": 83.028, "epsilon": -146.065, "zeta": -64.349, "epsilon_zeta": -81.716, "bb_type": "BI", "chi": -160.678, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.652, 0.562 ], "P_xyz": [ 0.711, 9.062, -1.096 ], "form": ".", "ssZp": 4.474, "Dp": 4.684, "splay_angle": 30.028, "splay_distance": 4.609, "splay_ratio": 0.259, "d22": 3.864, "d64": 4.200, "eta": 166.003, "theta": -136.568, "eta_prime": -140.739, "theta_prime": -142.362, "eta_base": -79.808, "theta_base": -105.454, "v0": 4.839, "v1": -26.475, "v2": 36.814, "v3": -34.952, "v4": 19.036, "amplitude": 37.544, "phase_angle": 11.316, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 172.733, 192.979, 201.542 ], "x_axis": [ 0.014, -0.720, 0.694 ], "y_axis": [ 0.739, 0.475, 0.477 ], "z_axis": [ -0.673, 0.507, 0.539 ], "quaternion": [ 0.712, -0.010, -0.480, -0.512 ] } }, { "index": 1206, "index_chain": 1206, "chain_name": "2", "nt_resnum": 1359, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1359", "linked_nts": [ "///2/1358", "///2/1360" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -74.628, "beta": 159.407, "gamma": 77.168, "delta": 84.517, "epsilon": -167.725, "zeta": -63.812, "epsilon_zeta": -103.913, "bb_type": "BI", "chi": -170.902, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.523, 1.177 ], "P_xyz": [ 1.256, 8.824, 0.708 ], "form": ".", "ssZp": 4.460, "Dp": 4.484, "splay_angle": 54.078, "splay_distance": 6.936, "splay_ratio": 0.493, "d22": 5.103, "d64": 3.373, "eta": 165.676, "theta": -136.638, "eta_prime": -164.657, "theta_prime": -134.518, "eta_base": -98.886, "theta_base": -72.337, "v0": 4.878, "v1": -25.350, "v2": 34.994, "v3": -33.076, "v4": 17.860, "amplitude": 35.635, "phase_angle": 10.883, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.220, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 170.469, 192.837, 205.554 ], "x_axis": [ 0.540, -0.148, 0.828 ], "y_axis": [ 0.488, 0.857, -0.165 ], "z_axis": [ -0.685, 0.494, 0.535 ], "quaternion": [ 0.856, -0.192, -0.442, -0.186 ] } }, { "index": 1207, "index_chain": 1207, "chain_name": "2", "nt_resnum": 1360, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1360", "linked_nts": [ "///2/1359", "///2/1361" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,internal-loop", "alpha": -112.433, "beta": -123.200, "gamma": 61.464, "delta": 87.117, "epsilon": -161.016, "zeta": -78.527, "epsilon_zeta": -82.489, "bb_type": "BI", "chi": 112.676, "glyco_bond": "--", "C5prime_xyz": [ -2.835, 5.455, 3.495 ], "P_xyz": [ -2.042, 3.025, 4.145 ], "form": ".", "ssZp": 1.389, "Dp": 4.574, "splay_angle": 24.864, "splay_distance": 3.758, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 172.665, "theta": -113.059, "eta_prime": 178.530, "theta_prime": -122.269, "eta_base": -115.078, "theta_base": -154.274, "v0": 14.485, "v1": -32.068, "v2": 36.706, "v3": -29.328, "v4": 9.469, "amplitude": 36.793, "phase_angle": 356.072, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.012, "filter_rmsd": 0.114, "frame": { "rmsd": 0.015, "origin": [ 169.476, 198.867, 208.834 ], "x_axis": [ 0.796, -0.605, -0.006 ], "y_axis": [ -0.409, -0.531, -0.742 ], "z_axis": [ 0.446, 0.593, -0.670 ], "quaternion": [ -0.386, 0.866, -0.293, 0.127 ] } }, { "index": 1208, "index_chain": 1208, "chain_name": "2", "nt_resnum": 1361, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1361", "linked_nts": [ "///2/1360", "///2/1362" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,internal-loop", "alpha": 135.443, "beta": -141.216, "gamma": -165.751, "delta": 79.127, "epsilon": -141.139, "zeta": 47.257, "epsilon_zeta": 171.604, "bb_type": "--", "chi": 78.871, "glyco_bond": "syn", "C5prime_xyz": [ -4.867, 4.862, 2.549 ], "P_xyz": [ -4.509, 5.548, 5.055 ], "form": ".", "ssZp": -1.062, "Dp": 4.551, "splay_angle": 19.255, "splay_distance": 3.755, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 174.555, "theta": -26.754, "eta_prime": -169.663, "theta_prime": -51.457, "eta_base": -154.486, "theta_base": -52.070, "v0": -3.543, "v1": -19.816, "v2": 34.237, "v3": -37.255, "v4": 25.716, "amplitude": 37.449, "phase_angle": 23.902, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.379, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 168.686, 199.576, 212.440 ], "x_axis": [ 0.816, -0.568, -0.104 ], "y_axis": [ -0.494, -0.592, -0.637 ], "z_axis": [ 0.300, 0.571, -0.764 ], "quaternion": [ -0.339, 0.891, -0.298, 0.055 ] } }, { "index": 1209, "index_chain": 1209, "chain_name": "2", "nt_resnum": 1362, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1362", "linked_nts": [ "///2/1361", "///2/1363" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,splayed-apart", "alpha": 67.686, "beta": 164.333, "gamma": 165.302, "delta": 144.392, "epsilon": -151.376, "zeta": 1.561, "epsilon_zeta": 207.064, "bb_type": "--", "chi": -106.866, "glyco_bond": "anti", "C5prime_xyz": [ -2.401, 8.251, -1.859 ], "P_xyz": [ -1.447, 8.793, -4.250 ], "form": ".", "ssZp": 2.037, "Dp": 2.009, "splay_angle": 122.899, "splay_distance": 16.207, "splay_ratio": 0.879, "d22": 7.552, "d64": 10.054, "eta": 95.812, "theta": -63.227, "eta_prime": 136.502, "theta_prime": -58.225, "eta_base": -172.301, "theta_base": -15.451, "v0": -24.274, "v1": 37.029, "v2": -34.959, "v3": 21.833, "v4": 1.317, "amplitude": 37.387, "phase_angle": 159.239, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "5q", "suiteness": 0.125, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 171.111, 202.137, 211.152 ], "x_axis": [ 0.226, -0.825, -0.518 ], "y_axis": [ -0.926, -0.018, -0.377 ], "z_axis": [ 0.302, 0.565, -0.768 ], "quaternion": [ -0.332, 0.709, -0.617, -0.076 ] } }, { "index": 1210, "index_chain": 1210, "chain_name": "2", "nt_resnum": 1363, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1363", "linked_nts": [ "///2/1362", "///2/1364" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,non-stack,isolated-canonical,non-pair-contact,helix-end,multiplet,bulge,internal-loop,phosphate,splayed-apart", "alpha": -109.115, "beta": -154.810, "gamma": 70.056, "delta": 148.165, "epsilon": -96.451, "zeta": -132.218, "epsilon_zeta": 35.767, "bb_type": "--", "chi": -166.189, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.479, 1.326 ], "P_xyz": [ -0.004, 8.035, 3.337 ], "form": ".", "ssZp": 0.901, "Dp": 0.912, "splay_angle": 46.402, "splay_distance": 8.180, "splay_ratio": 0.395, "d22": 7.456, "d64": 8.303, "eta": -179.338, "theta": -88.305, "eta_prime": -120.084, "theta_prime": -137.826, "eta_base": -118.454, "theta_base": -154.955, "v0": -18.261, "v1": 33.478, "v2": -35.039, "v3": 25.395, "v4": -4.665, "amplitude": 35.740, "phase_angle": 168.633, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 155.236, 204.314, 208.720 ], "x_axis": [ 0.185, -0.616, 0.765 ], "y_axis": [ 0.982, 0.087, -0.167 ], "z_axis": [ 0.036, 0.783, 0.621 ], "quaternion": [ 0.688, -0.345, -0.265, -0.581 ] } }, { "index": 1211, "index_chain": 1211, "chain_name": "2", "nt_resnum": 1364, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1364", "linked_nts": [ "///2/1363", "///2/1365" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge", "alpha": 59.894, "beta": -169.899, "gamma": -174.047, "delta": 80.764, "epsilon": -127.919, "zeta": -57.077, "epsilon_zeta": -70.842, "bb_type": "BI", "chi": -159.660, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.713, 0.496 ], "P_xyz": [ -0.415, 10.553, -1.115 ], "form": ".", "ssZp": 4.349, "Dp": 4.750, "splay_angle": 46.471, "splay_distance": 7.191, "splay_ratio": 0.395, "d22": null, "d64": null, "eta": 83.000, "theta": -146.898, "eta_prime": 108.472, "theta_prime": -134.800, "eta_base": 116.370, "theta_base": -90.141, "v0": 3.012, "v1": -25.261, "v2": 36.695, "v3": -35.962, "v4": 20.782, "amplitude": 37.843, "phase_angle": 14.150, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.162, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 151.439, 208.647, 202.913 ], "x_axis": [ -0.023, -0.577, 0.816 ], "y_axis": [ 0.982, 0.140, 0.127 ], "z_axis": [ -0.188, 0.805, 0.564 ], "quaternion": [ 0.648, -0.261, -0.387, -0.601 ] } }, { "index": 1212, "index_chain": 1212, "chain_name": "2", "nt_resnum": 1365, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1365", "linked_nts": [ "///2/1364", "///2/1366" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge", "alpha": -63.777, "beta": 166.069, "gamma": 64.411, "delta": 80.475, "epsilon": -137.327, "zeta": -85.742, "epsilon_zeta": -51.585, "bb_type": "BI", "chi": -174.049, "glyco_bond": "anti", "C5prime_xyz": [ -1.436, 8.574, 1.343 ], "P_xyz": [ 1.162, 8.940, 1.436 ], "form": "A", "ssZp": 4.687, "Dp": 4.717, "splay_angle": 22.670, "splay_distance": 3.486, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 167.424, "theta": -148.932, "eta_prime": -161.162, "theta_prime": -149.186, "eta_base": -96.194, "theta_base": -125.641, "v0": 3.140, "v1": -25.368, "v2": 36.727, "v3": -35.935, "v4": 20.677, "amplitude": 37.845, "phase_angle": 13.962, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.596, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 153.396, 209.029, 209.822 ], "x_axis": [ 0.911, -0.322, 0.257 ], "y_axis": [ 0.399, 0.539, -0.742 ], "z_axis": [ 0.100, 0.778, 0.620 ], "quaternion": [ 0.876, -0.434, -0.045, -0.206 ] } }, { "index": 1213, "index_chain": 1213, "chain_name": "2", "nt_resnum": 1366, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1366", "linked_nts": [ "///2/1365", "///2/1367" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop,A-minor", "alpha": -67.038, "beta": 162.181, "gamma": 58.513, "delta": 80.801, "epsilon": -144.741, "zeta": -66.477, "epsilon_zeta": -78.264, "bb_type": "BI", "chi": -175.854, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.499, 1.441 ], "P_xyz": [ 1.182, 8.776, 1.595 ], "form": "A", "ssZp": 4.699, "Dp": 4.699, "splay_angle": 24.949, "splay_distance": 3.973, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 162.828, "theta": -134.717, "eta_prime": 174.563, "theta_prime": -135.037, "eta_base": -145.379, "theta_base": -106.961, "v0": 4.451, "v1": -26.493, "v2": 37.274, "v3": -35.723, "v4": 19.718, "amplitude": 38.114, "phase_angle": 12.055, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.773, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 153.451, 210.467, 212.997 ], "x_axis": [ 0.954, -0.098, -0.282 ], "y_axis": [ -0.155, 0.646, -0.748 ], "z_axis": [ 0.256, 0.757, 0.601 ], "quaternion": [ 0.895, -0.421, 0.150, 0.016 ] } }, { "index": 1214, "index_chain": 1214, "chain_name": "2", "nt_resnum": 1367, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1367", "linked_nts": [ "///2/1366", "///2/1368" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -68.057, "beta": -178.589, "gamma": 54.519, "delta": 80.046, "epsilon": -146.536, "zeta": -74.773, "epsilon_zeta": -71.763, "bb_type": "BI", "chi": -163.242, "glyco_bond": "anti", "C5prime_xyz": [ -1.488, 8.725, 0.707 ], "P_xyz": [ 1.037, 9.291, 1.131 ], "form": "A", "ssZp": 4.499, "Dp": 4.647, "splay_angle": 28.009, "splay_distance": 4.358, "splay_ratio": 0.242, "d22": 4.407, "d64": 4.618, "eta": 169.345, "theta": -146.483, "eta_prime": -175.520, "theta_prime": -142.244, "eta_base": -129.299, "theta_base": -108.810, "v0": 1.497, "v1": -23.997, "v2": 36.110, "v3": -36.241, "v4": 21.897, "amplitude": 37.635, "phase_angle": 16.369, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.958, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 156.153, 211.649, 215.659 ], "x_axis": [ 0.627, 0.287, -0.724 ], "y_axis": [ -0.707, 0.599, -0.375 ], "z_axis": [ 0.327, 0.747, 0.579 ], "quaternion": [ 0.837, -0.335, 0.314, 0.297 ] } }, { "index": 1215, "index_chain": 1215, "chain_name": "2", "nt_resnum": 1368, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1368", "linked_nts": [ "///2/1367", "///2/1369" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -60.556, "beta": 166.190, "gamma": 60.264, "delta": 80.626, "epsilon": -142.272, "zeta": -53.362, "epsilon_zeta": -88.910, "bb_type": "BI", "chi": -163.361, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.670, 0.728 ], "P_xyz": [ 1.237, 9.015, 0.587 ], "form": ".", "ssZp": 4.518, "Dp": 4.698, "splay_angle": 85.310, "splay_distance": 12.044, "splay_ratio": 0.678, "d22": null, "d64": null, "eta": 173.003, "theta": -110.167, "eta_prime": -171.133, "theta_prime": -158.387, "eta_base": -124.487, "theta_base": 144.647, "v0": 3.788, "v1": -25.961, "v2": 37.065, "v3": -35.851, "v4": 20.220, "amplitude": 38.039, "phase_angle": 12.993, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.893, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 159.061, 214.581, 217.052 ], "x_axis": [ 0.058, 0.589, -0.806 ], "y_axis": [ -0.944, 0.295, 0.148 ], "z_axis": [ 0.324, 0.753, 0.573 ], "quaternion": [ 0.694, -0.218, 0.407, 0.552 ] } }, { "index": 1216, "index_chain": 1216, "chain_name": "2", "nt_resnum": 1369, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1369", "linked_nts": [ "///2/1368", "///2/1370" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 172.117, "beta": 138.132, "gamma": 48.132, "delta": 84.357, "epsilon": -104.754, "zeta": -106.569, "epsilon_zeta": 1.815, "bb_type": "--", "chi": -168.426, "glyco_bond": "anti", "C5prime_xyz": [ -1.727, 8.713, 1.000 ], "P_xyz": [ 0.881, 8.823, 1.278 ], "form": ".", "ssZp": 4.151, "Dp": 4.439, "splay_angle": 27.122, "splay_distance": 4.383, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 23.068, "theta": -135.052, "eta_prime": 47.317, "theta_prime": -132.279, "eta_base": 21.413, "theta_base": -97.439, "v0": -3.133, "v1": -17.735, "v2": 30.545, "v3": -33.240, "v4": 22.952, "amplitude": 33.401, "phase_angle": 23.865, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.685, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 157.120, 212.694, 228.788 ], "x_axis": [ -0.955, -0.251, 0.158 ], "y_axis": [ -0.296, 0.766, -0.571 ], "z_axis": [ 0.022, -0.592, -0.806 ], "quaternion": [ -0.036, -0.146, 0.939, -0.310 ] } }, { "index": 1217, "index_chain": 1217, "chain_name": "2", "nt_resnum": 1370, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1370", "linked_nts": [ "///2/1369", "///2/1371" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": -57.676, "beta": 134.843, "gamma": 63.088, "delta": 81.896, "epsilon": -105.002, "zeta": -96.081, "epsilon_zeta": -8.921, "bb_type": "--", "chi": -153.252, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.756, 0.113 ], "P_xyz": [ 1.017, 8.677, -0.904 ], "form": ".", "ssZp": 3.796, "Dp": 4.701, "splay_angle": 106.878, "splay_distance": 16.904, "splay_ratio": 0.805, "d22": null, "d64": null, "eta": 169.963, "theta": -135.031, "eta_prime": -175.305, "theta_prime": -164.794, "eta_base": -130.784, "theta_base": 177.251, "v0": 1.517, "v1": -23.280, "v2": 34.940, "v3": -35.024, "v4": 21.156, "amplitude": 36.397, "phase_angle": 16.270, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.801, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 155.991, 210.291, 225.301 ], "x_axis": [ -0.924, 0.309, -0.225 ], "y_axis": [ 0.380, 0.688, -0.618 ], "z_axis": [ -0.036, -0.657, -0.753 ], "quaternion": [ 0.051, 0.188, 0.917, -0.348 ] } }, { "index": 1218, "index_chain": 1218, "chain_name": "2", "nt_resnum": 1371, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1371", "linked_nts": [ "///2/1370", "///2/1372" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -98.421, "beta": 146.894, "gamma": -81.942, "delta": 145.901, "epsilon": -136.661, "zeta": 115.908, "epsilon_zeta": 107.431, "bb_type": "--", "chi": -138.606, "glyco_bond": "anti", "C5prime_xyz": [ -1.859, 8.721, -0.235 ], "P_xyz": [ -1.837, 11.199, 0.641 ], "form": ".", "ssZp": 1.632, "Dp": 1.698, "splay_angle": 107.953, "splay_distance": 15.660, "splay_ratio": 0.809, "d22": 8.793, "d64": 9.817, "eta": 4.824, "theta": 73.777, "eta_prime": 11.762, "theta_prime": 61.008, "eta_base": -9.017, "theta_base": 46.480, "v0": -21.761, "v1": 35.597, "v2": -35.098, "v3": 23.442, "v4": -1.244, "amplitude": 36.668, "phase_angle": 163.172, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 166.472, 203.681, 213.803 ], "x_axis": [ 0.560, 0.416, -0.717 ], "y_axis": [ -0.420, 0.888, 0.188 ], "z_axis": [ 0.715, 0.196, 0.671 ], "quaternion": [ 0.883, -0.002, 0.405, 0.237 ] } }, { "index": 1219, "index_chain": 1219, "chain_name": "2", "nt_resnum": 1372, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1372", "linked_nts": [ "///2/1371", "///2/1373" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-donor,phosphate,splayed-apart", "alpha": 167.397, "beta": -174.009, "gamma": 48.260, "delta": 82.050, "epsilon": -170.257, "zeta": -77.531, "epsilon_zeta": -92.726, "bb_type": "BI", "chi": -155.236, "glyco_bond": "anti", "C5prime_xyz": [ -1.576, 8.814, 0.227 ], "P_xyz": [ 0.854, 9.575, 0.846 ], "form": "A", "ssZp": 4.173, "Dp": 4.348, "splay_angle": 23.105, "splay_distance": 3.805, "splay_ratio": 0.203, "d22": 4.420, "d64": 4.513, "eta": 81.200, "theta": -136.993, "eta_prime": 84.926, "theta_prime": -141.891, "eta_base": 97.419, "theta_base": -111.771, "v0": -1.126, "v1": -20.635, "v2": 33.255, "v3": -34.847, "v4": 22.692, "amplitude": 35.477, "phase_angle": 20.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.010, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 154.047, 212.884, 216.282 ], "x_axis": [ 0.709, 0.267, -0.653 ], "y_axis": [ 0.689, -0.459, 0.561 ], "z_axis": [ -0.150, -0.848, -0.509 ], "quaternion": [ 0.430, 0.818, 0.292, -0.245 ] } }, { "index": 1220, "index_chain": 1220, "chain_name": "2", "nt_resnum": 1373, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1373", "linked_nts": [ "///2/1372", "///2/1374" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop,A-minor,ribose-zipper", "alpha": 171.280, "beta": -155.082, "gamma": 154.729, "delta": 81.979, "epsilon": -144.097, "zeta": -79.283, "epsilon_zeta": -64.815, "bb_type": "BI", "chi": -169.705, "glyco_bond": "anti", "C5prime_xyz": [ -1.271, 8.626, 1.113 ], "P_xyz": [ 0.759, 9.658, -0.177 ], "form": "A", "ssZp": 4.585, "Dp": 4.651, "splay_angle": 24.506, "splay_distance": 3.819, "splay_ratio": 0.213, "d22": 4.433, "d64": 4.537, "eta": 158.870, "theta": -158.450, "eta_prime": 177.486, "theta_prime": -160.040, "eta_base": -134.840, "theta_base": -133.999, "v0": 3.058, "v1": -24.491, "v2": 35.415, "v3": -34.648, "v4": 19.929, "amplitude": 36.488, "phase_angle": 13.926, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.166, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 153.677, 210.892, 213.062 ], "x_axis": [ 0.977, -0.010, -0.211 ], "y_axis": [ 0.161, -0.613, 0.773 ], "z_axis": [ -0.137, -0.790, -0.598 ], "quaternion": [ 0.438, 0.893, 0.042, -0.097 ] } }, { "index": 1221, "index_chain": 1221, "chain_name": "2", "nt_resnum": 1374, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1374", "linked_nts": [ "///2/1373", "///2/1375" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge,ribose-zipper", "alpha": -60.068, "beta": 164.366, "gamma": 58.657, "delta": 81.822, "epsilon": -142.979, "zeta": -65.593, "epsilon_zeta": -77.386, "bb_type": "BI", "chi": -167.898, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.696, 0.993 ], "P_xyz": [ 1.290, 8.967, 1.131 ], "form": ".", "ssZp": 4.548, "Dp": 4.640, "splay_angle": 29.187, "splay_distance": 4.444, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 171.590, "theta": -131.459, "eta_prime": -174.252, "theta_prime": -129.827, "eta_base": -133.896, "theta_base": -78.983, "v0": 1.924, "v1": -23.737, "v2": 35.266, "v3": -35.111, "v4": 20.945, "amplitude": 36.623, "phase_angle": 15.645, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 153.597, 209.001, 209.745 ], "x_axis": [ 0.910, -0.323, 0.261 ], "y_axis": [ -0.400, -0.509, 0.763 ], "z_axis": [ -0.113, -0.798, -0.592 ], "quaternion": [ 0.450, 0.867, -0.208, 0.043 ] } }, { "index": 1222, "index_chain": 1222, "chain_name": "2", "nt_resnum": 1375, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1375", "linked_nts": [ "///2/1374", "///2/1376" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,bulge,internal-loop", "alpha": -67.350, "beta": 165.737, "gamma": 58.061, "delta": 83.818, "epsilon": -147.436, "zeta": -83.297, "epsilon_zeta": -64.138, "bb_type": "BI", "chi": -167.635, "glyco_bond": "anti", "C5prime_xyz": [ -1.040, 8.541, 1.010 ], "P_xyz": [ 1.588, 8.519, 1.029 ], "form": "A", "ssZp": 4.602, "Dp": 4.680, "splay_angle": 25.233, "splay_distance": 3.845, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 162.286, "theta": -148.794, "eta_prime": -173.553, "theta_prime": -149.397, "eta_base": -98.825, "theta_base": -134.019, "v0": 6.971, "v1": -27.301, "v2": 36.173, "v3": -33.166, "v4": 16.558, "amplitude": 36.520, "phase_angle": 7.902, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.917, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 155.498, 205.047, 209.033 ], "x_axis": [ 0.210, -0.585, 0.783 ], "y_axis": [ -0.974, -0.054, 0.221 ], "z_axis": [ -0.087, -0.809, -0.581 ], "quaternion": [ 0.379, 0.679, -0.574, 0.256 ] } }, { "index": 1223, "index_chain": 1223, "chain_name": "2", "nt_resnum": 1376, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1376", "linked_nts": [ "///2/1375", "///2/1377" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -57.873, "beta": 162.150, "gamma": 58.229, "delta": 82.641, "epsilon": -175.145, "zeta": 22.309, "epsilon_zeta": 162.546, "bb_type": "--", "chi": -169.882, "glyco_bond": "anti", "C5prime_xyz": [ -1.293, 8.533, 1.124 ], "P_xyz": [ 1.324, 8.698, 1.192 ], "form": ".", "ssZp": 4.423, "Dp": 4.434, "splay_angle": 29.154, "splay_distance": 5.245, "splay_ratio": 0.275, "d22": null, "d64": null, "eta": 168.512, "theta": -78.156, "eta_prime": -174.362, "theta_prime": -98.886, "eta_base": -139.880, "theta_base": -63.841, "v0": 4.481, "v1": -25.510, "v2": 35.684, "v3": -34.116, "v4": 18.718, "amplitude": 36.448, "phase_angle": 11.750, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.820, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 156.697, 202.434, 206.481 ], "x_axis": [ -0.246, -0.537, 0.807 ], "y_axis": [ -0.964, 0.219, -0.147 ], "z_axis": [ -0.098, -0.814, -0.572 ], "quaternion": [ -0.317, -0.526, 0.714, -0.337 ] } }, { "index": 1224, "index_chain": 1224, "chain_name": "2", "nt_resnum": 1377, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1377", "linked_nts": [ "///2/1376", "///2/1378" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -176.260, "beta": 120.334, "gamma": 153.774, "delta": 82.352, "epsilon": -122.956, "zeta": -86.909, "epsilon_zeta": -36.047, "bb_type": "--", "chi": -167.812, "glyco_bond": "anti", "C5prime_xyz": [ -1.415, 8.634, 0.987 ], "P_xyz": [ -0.996, 10.561, -0.740 ], "form": ".", "ssZp": 4.502, "Dp": 4.706, "splay_angle": 80.709, "splay_distance": 12.711, "splay_ratio": 0.650, "d22": null, "d64": null, "eta": 159.141, "theta": 176.758, "eta_prime": -173.742, "theta_prime": 177.331, "eta_base": -105.148, "theta_base": -167.486, "v0": 2.234, "v1": -23.668, "v2": 34.856, "v3": -34.551, "v4": 20.398, "amplitude": 36.111, "phase_angle": 15.151, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 155.350, 197.981, 208.903 ], "x_axis": [ -0.873, -0.303, 0.382 ], "y_axis": [ -0.468, 0.305, -0.829 ], "z_axis": [ 0.135, -0.903, -0.408 ], "quaternion": [ -0.077, -0.240, 0.804, -0.538 ] } }, { "index": 1225, "index_chain": 1225, "chain_name": "2", "nt_resnum": 1378, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1378", "linked_nts": [ "///2/1377", "///2/1379" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": -64.535, "beta": 151.450, "gamma": -171.208, "delta": 146.598, "epsilon": -68.122, "zeta": 87.909, "epsilon_zeta": 203.970, "bb_type": "--", "chi": -108.813, "glyco_bond": "anti", "C5prime_xyz": [ -2.265, 8.294, -1.746 ], "P_xyz": [ -1.937, 9.439, -4.088 ], "form": ".", "ssZp": 0.129, "Dp": 0.150, "splay_angle": 54.490, "splay_distance": 8.926, "splay_ratio": 0.458, "d22": null, "d64": null, "eta": -9.669, "theta": 100.664, "eta_prime": -22.864, "theta_prime": 120.567, "eta_base": -50.126, "theta_base": 162.151, "v0": -22.844, "v1": 36.847, "v2": -35.994, "v3": 23.730, "v4": -0.774, "amplitude": 37.766, "phase_angle": 162.378, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 159.634, 187.948, 202.380 ], "x_axis": [ -0.104, -0.502, -0.858 ], "y_axis": [ -0.069, 0.865, -0.498 ], "z_axis": [ 0.992, 0.007, -0.125 ], "quaternion": [ 0.639, -0.197, 0.723, -0.170 ] } }, { "index": 1226, "index_chain": 1226, "chain_name": "2", "nt_resnum": 1379, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1379", "linked_nts": [ "///2/1378", "///2/1380" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,phosphate", "alpha": 105.448, "beta": -116.364, "gamma": -174.642, "delta": 83.754, "epsilon": -155.793, "zeta": -74.757, "epsilon_zeta": -81.037, "bb_type": "BI", "chi": -158.667, "glyco_bond": "anti", "C5prime_xyz": [ -1.188, 8.746, 0.544 ], "P_xyz": [ 0.155, 9.423, -1.606 ], "form": "A", "ssZp": 4.274, "Dp": 4.473, "splay_angle": 21.941, "splay_distance": 3.455, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": -142.854, "theta": -168.849, "eta_prime": -139.168, "theta_prime": -173.907, "eta_base": -98.983, "theta_base": -146.888, "v0": 2.114, "v1": -22.960, "v2": 33.906, "v3": -33.592, "v4": 19.899, "amplitude": 35.141, "phase_angle": 15.233, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.434, "filter_rmsd": 0.048, "frame": { "rmsd": 0.016, "origin": [ 164.114, 191.383, 209.294 ], "x_axis": [ 0.794, 0.605, 0.059 ], "y_axis": [ -0.519, 0.726, -0.451 ], "z_axis": [ -0.315, 0.328, 0.891 ], "quaternion": [ 0.923, -0.211, -0.101, 0.304 ] } }, { "index": 1227, "index_chain": 1227, "chain_name": "2", "nt_resnum": 1380, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1380", "linked_nts": [ "///2/1379", "///2/1381" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -64.007, "beta": 171.091, "gamma": 52.954, "delta": 83.434, "epsilon": -142.724, "zeta": -70.611, "epsilon_zeta": -72.113, "bb_type": "BI", "chi": -160.407, "glyco_bond": "anti", "C5prime_xyz": [ -1.045, 8.731, 0.578 ], "P_xyz": [ 1.562, 8.839, 0.882 ], "form": ".", "ssZp": 4.357, "Dp": 4.619, "splay_angle": 23.019, "splay_distance": 3.616, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 169.691, "theta": -134.727, "eta_prime": -178.405, "theta_prime": -133.126, "eta_base": -138.598, "theta_base": -87.784, "v0": 3.007, "v1": -23.854, "v2": 34.484, "v3": -33.645, "v4": 19.344, "amplitude": 35.513, "phase_angle": 13.831, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.940, "filter_rmsd": 0.073, "frame": { "rmsd": 0.012, "origin": [ 163.685, 191.938, 212.677 ], "x_axis": [ 0.398, 0.881, -0.255 ], "y_axis": [ -0.875, 0.282, -0.393 ], "z_axis": [ -0.274, 0.380, 0.883 ], "quaternion": [ 0.801, -0.241, -0.006, 0.548 ] } }, { "index": 1228, "index_chain": 1228, "chain_name": "2", "nt_resnum": 1381, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1381", "linked_nts": [ "///2/1380", "///2/1382" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -60.813, "beta": 160.752, "gamma": 53.141, "delta": 82.039, "epsilon": -146.565, "zeta": -42.729, "epsilon_zeta": -103.836, "bb_type": "BI", "chi": -163.571, "glyco_bond": "anti", "C5prime_xyz": [ -1.206, 8.673, 0.742 ], "P_xyz": [ 1.413, 8.807, 0.690 ], "form": ".", "ssZp": 4.520, "Dp": 4.673, "splay_angle": 22.300, "splay_distance": 4.126, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 161.023, "theta": -119.922, "eta_prime": -177.275, "theta_prime": -137.102, "eta_base": -110.860, "theta_base": -144.892, "v0": 4.795, "v1": -25.970, "v2": 36.186, "v3": -34.393, "v4": 18.706, "amplitude": 36.907, "phase_angle": 11.340, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.902, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 163.547, 194.933, 214.699 ], "x_axis": [ -0.291, 0.803, -0.521 ], "y_axis": [ -0.933, -0.358, -0.031 ], "z_axis": [ -0.211, 0.477, 0.853 ], "quaternion": [ 0.549, -0.232, 0.141, 0.791 ] } }, { "index": 1229, "index_chain": 1229, "chain_name": "2", "nt_resnum": 1382, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1382", "linked_nts": [ "///2/1381", "///2/1383" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -150.744, "beta": 127.634, "gamma": 152.676, "delta": 82.423, "epsilon": -136.958, "zeta": -94.188, "epsilon_zeta": -42.771, "bb_type": "BI", "chi": -178.567, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.427, 1.618 ], "P_xyz": [ -0.602, 10.559, 0.364 ], "form": "A", "ssZp": 4.615, "Dp": 4.647, "splay_angle": 24.886, "splay_distance": 3.816, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 165.664, "theta": 163.544, "eta_prime": 173.397, "theta_prime": 175.029, "eta_base": -175.097, "theta_base": -162.953, "v0": 2.366, "v1": -23.514, "v2": 34.545, "v3": -34.167, "v4": 20.066, "amplitude": 35.752, "phase_angle": 14.933, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.017, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 165.837, 197.210, 217.268 ], "x_axis": [ -0.422, 0.532, -0.734 ], "y_axis": [ -0.874, -0.455, 0.172 ], "z_axis": [ -0.242, 0.714, 0.657 ], "quaternion": [ 0.442, -0.307, 0.279, 0.796 ] } }, { "index": 1230, "index_chain": 1230, "chain_name": "2", "nt_resnum": 1383, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1383", "linked_nts": [ "///2/1382", "///2/1384" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -53.854, "beta": 163.235, "gamma": 46.597, "delta": 81.451, "epsilon": -150.798, "zeta": -76.773, "epsilon_zeta": -74.025, "bb_type": "BI", "chi": -169.325, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.561, 1.090 ], "P_xyz": [ 1.238, 8.760, 1.494 ], "form": "A", "ssZp": 4.588, "Dp": 4.636, "splay_angle": 22.663, "splay_distance": 3.578, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 166.901, "theta": -147.971, "eta_prime": 175.769, "theta_prime": -147.840, "eta_base": -158.129, "theta_base": -130.185, "v0": 4.003, "v1": -25.673, "v2": 36.401, "v3": -35.089, "v4": 19.609, "amplitude": 37.298, "phase_angle": 12.591, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.552, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 167.226, 199.873, 219.621 ], "x_axis": [ -0.757, 0.231, -0.611 ], "y_axis": [ -0.591, -0.640, 0.491 ], "z_axis": [ -0.277, 0.733, 0.621 ], "quaternion": [ 0.237, -0.256, 0.352, 0.869 ] } }, { "index": 1231, "index_chain": 1231, "chain_name": "2", "nt_resnum": 1384, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1384", "linked_nts": [ "///2/1383", "///2/1385" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -57.566, "beta": 172.555, "gamma": 50.358, "delta": 80.071, "epsilon": -128.914, "zeta": -68.874, "epsilon_zeta": -60.040, "bb_type": "BI", "chi": -162.957, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.749, 0.704 ], "P_xyz": [ 1.254, 9.144, 1.031 ], "form": ".", "ssZp": 4.438, "Dp": 4.727, "splay_angle": 40.902, "splay_distance": 6.272, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 175.333, "theta": -126.318, "eta_prime": -176.103, "theta_prime": -122.127, "eta_base": -147.394, "theta_base": -80.891, "v0": 2.247, "v1": -24.649, "v2": 36.461, "v3": -36.178, "v4": 21.382, "amplitude": 37.797, "phase_angle": 15.283, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.927, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 167.463, 203.357, 220.405 ], "x_axis": [ -0.944, -0.126, -0.306 ], "y_axis": [ -0.165, -0.621, 0.767 ], "z_axis": [ -0.286, 0.774, 0.565 ], "quaternion": [ 0.011, -0.167, 0.435, 0.884 ] } }, { "index": 1232, "index_chain": 1232, "chain_name": "2", "nt_resnum": 1385, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1385", "linked_nts": [ "///2/1384", "///2/1386" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -60.230, "beta": 174.956, "gamma": 46.529, "delta": 80.377, "epsilon": -134.617, "zeta": -67.115, "epsilon_zeta": -67.503, "bb_type": "BI", "chi": 170.062, "glyco_bond": "anti", "C5prime_xyz": [ -1.531, 8.159, 2.181 ], "P_xyz": [ 0.807, 8.155, 3.359 ], "form": "A", "ssZp": 4.713, "Dp": 4.745, "splay_angle": 27.561, "splay_distance": 4.214, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 163.561, "theta": -130.068, "eta_prime": -177.293, "theta_prime": -124.981, "eta_base": -116.933, "theta_base": -83.652, "v0": 4.235, "v1": -26.385, "v2": 37.299, "v3": -35.868, "v4": 19.954, "amplitude": 38.187, "phase_angle": 12.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.738, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 162.178, 205.559, 222.967 ], "x_axis": [ -0.368, -0.930, -0.026 ], "y_axis": [ 0.838, -0.343, 0.424 ], "z_axis": [ -0.403, 0.134, 0.905 ], "quaternion": [ 0.546, 0.133, -0.172, -0.809 ] } }, { "index": 1233, "index_chain": 1233, "chain_name": "2", "nt_resnum": 1386, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1386", "linked_nts": [ "///2/1385", "///2/1387" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -69.904, "beta": -177.769, "gamma": 53.043, "delta": 82.665, "epsilon": -132.854, "zeta": -62.601, "epsilon_zeta": -70.253, "bb_type": "BI", "chi": -171.743, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.543, 1.233 ], "P_xyz": [ 1.089, 8.801, 2.049 ], "form": ".", "ssZp": 4.603, "Dp": 4.689, "splay_angle": 32.691, "splay_distance": 4.972, "splay_ratio": 0.281, "d22": null, "d64": null, "eta": 167.879, "theta": -122.226, "eta_prime": -175.192, "theta_prime": -117.007, "eta_base": -117.958, "theta_base": -59.003, "v0": 3.183, "v1": -24.466, "v2": 35.259, "v3": -34.399, "v4": 19.705, "amplitude": 36.292, "phase_angle": 13.701, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.865, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 159.012, 204.394, 225.492 ], "x_axis": [ 0.418, -0.879, 0.228 ], "y_axis": [ 0.854, 0.466, 0.231 ], "z_axis": [ -0.309, 0.098, 0.946 ], "quaternion": [ 0.841, 0.039, -0.160, -0.515 ] } }, { "index": 1234, "index_chain": 1234, "chain_name": "2", "nt_resnum": 1387, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1387", "linked_nts": [ "///2/1386", "///2/1388" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -65.518, "beta": 161.080, "gamma": 55.490, "delta": 81.265, "epsilon": -135.385, "zeta": -61.380, "epsilon_zeta": -74.005, "bb_type": "BI", "chi": -170.366, "glyco_bond": "anti", "C5prime_xyz": [ -1.174, 8.541, 1.134 ], "P_xyz": [ 1.448, 8.635, 1.103 ], "form": ".", "ssZp": 4.674, "Dp": 4.768, "splay_angle": 41.029, "splay_distance": 6.056, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 156.770, "theta": -121.729, "eta_prime": -175.490, "theta_prime": -118.641, "eta_base": -92.228, "theta_base": -85.570, "v0": 6.532, "v1": -28.201, "v2": 38.027, "v3": -35.256, "v4": 18.143, "amplitude": 38.507, "phase_angle": 9.062, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.801, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 160.865, 202.196, 229.549 ], "x_axis": [ 0.957, -0.004, 0.291 ], "y_axis": [ 0.016, 0.999, -0.039 ], "z_axis": [ -0.290, 0.042, 0.956 ], "quaternion": [ 0.989, -0.021, -0.147, -0.005 ] } }, { "index": 1235, "index_chain": 1235, "chain_name": "2", "nt_resnum": 1388, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1388", "linked_nts": [ "///2/1387", "///2/1389" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,cap-acceptor,phosphate", "alpha": -63.898, "beta": 162.133, "gamma": 64.850, "delta": 77.221, "epsilon": -123.825, "zeta": -39.194, "epsilon_zeta": -84.631, "bb_type": "--", "chi": 170.354, "glyco_bond": "anti", "C5prime_xyz": [ -1.298, 8.011, 2.129 ], "P_xyz": [ 1.308, 8.294, 2.123 ], "form": ".", "ssZp": 4.902, "Dp": 4.858, "splay_angle": 54.199, "splay_distance": 7.766, "splay_ratio": 0.461, "d22": null, "d64": null, "eta": 168.808, "theta": -94.843, "eta_prime": -165.149, "theta_prime": -92.201, "eta_base": -100.102, "theta_base": -53.232, "v0": 8.666, "v1": -31.861, "v2": 41.890, "v3": -37.892, "v4": 18.381, "amplitude": 42.202, "phase_angle": 6.963, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.682, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 162.905, 203.115, 235.176 ], "x_axis": [ 0.561, 0.814, 0.148 ], "y_axis": [ -0.665, 0.550, -0.505 ], "z_axis": [ -0.493, 0.185, 0.850 ], "quaternion": [ 0.860, -0.201, -0.186, 0.430 ] } }, { "index": 1236, "index_chain": 1236, "chain_name": "2", "nt_resnum": 1389, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1389", "linked_nts": [ "///2/1388", "///2/1390" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,cap-donor,phosphate", "alpha": -78.801, "beta": -169.172, "gamma": 59.970, "delta": 80.424, "epsilon": -146.045, "zeta": -72.841, "epsilon_zeta": -73.204, "bb_type": "BI", "chi": -179.961, "glyco_bond": "anti", "C5prime_xyz": [ -1.330, 8.472, 1.675 ], "P_xyz": [ 1.098, 8.614, 2.674 ], "form": "A", "ssZp": 4.674, "Dp": 4.668, "splay_angle": 24.228, "splay_distance": 3.654, "splay_ratio": 0.211, "d22": 4.466, "d64": 4.171, "eta": 161.870, "theta": -144.454, "eta_prime": -164.172, "theta_prime": -140.769, "eta_base": -85.237, "theta_base": -108.667, "v0": 2.816, "v1": -24.966, "v2": 36.399, "v3": -35.727, "v4": 20.764, "amplitude": 37.575, "phase_angle": 14.374, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.242, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 162.370, 210.367, 237.904 ], "x_axis": [ -0.507, 0.618, -0.601 ], "y_axis": [ -0.535, -0.772, -0.343 ], "z_axis": [ -0.676, 0.148, 0.722 ], "quaternion": [ 0.333, -0.369, -0.056, 0.866 ] } }, { "index": 1237, "index_chain": 1237, "chain_name": "2", "nt_resnum": 1390, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1390", "linked_nts": [ "///2/1389", "///2/1391" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem", "alpha": -83.203, "beta": -179.343, "gamma": 63.126, "delta": 82.685, "epsilon": -155.502, "zeta": -69.041, "epsilon_zeta": -86.461, "bb_type": "BI", "chi": -174.408, "glyco_bond": "anti", "C5prime_xyz": [ -1.201, 8.431, 1.394 ], "P_xyz": [ 1.391, 8.545, 1.816 ], "form": "A", "ssZp": 4.633, "Dp": 4.629, "splay_angle": 23.319, "splay_distance": 3.627, "splay_ratio": 0.207, "d22": 4.732, "d64": 4.647, "eta": 162.092, "theta": -145.191, "eta_prime": 176.474, "theta_prime": -145.358, "eta_base": -135.925, "theta_base": -128.366, "v0": 5.945, "v1": -27.056, "v2": 36.717, "v3": -34.275, "v4": 17.881, "amplitude": 37.241, "phase_angle": 9.620, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.637, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 160.604, 212.447, 240.334 ], "x_axis": [ -0.654, -0.027, -0.756 ], "y_axis": [ -0.072, -0.993, 0.098 ], "z_axis": [ -0.753, 0.118, 0.647 ], "quaternion": [ 0.012, -0.416, 0.060, 0.907 ] } }, { "index": 1238, "index_chain": 1238, "chain_name": "2", "nt_resnum": 1391, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1391", "linked_nts": [ "///2/1390", "///2/1392" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": -74.436, "beta": -170.402, "gamma": 52.059, "delta": 81.574, "epsilon": -148.213, "zeta": -73.448, "epsilon_zeta": -74.764, "bb_type": "BI", "chi": -166.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.109, 8.669, 0.896 ], "P_xyz": [ 1.396, 8.903, 1.653 ], "form": "A", "ssZp": 4.559, "Dp": 4.652, "splay_angle": 21.092, "splay_distance": 3.348, "splay_ratio": 0.185, "d22": 4.172, "d64": 4.127, "eta": 169.453, "theta": -146.599, "eta_prime": 178.179, "theta_prime": -143.643, "eta_base": -151.682, "theta_base": -122.120, "v0": 3.813, "v1": -25.336, "v2": 36.047, "v3": -34.830, "v4": 19.572, "amplitude": 36.969, "phase_angle": 12.824, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.828, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 158.512, 214.943, 241.930 ], "x_axis": [ -0.476, -0.576, -0.665 ], "y_axis": [ 0.270, -0.815, 0.513 ], "z_axis": [ -0.837, 0.065, 0.543 ], "quaternion": [ -0.251, -0.446, 0.172, 0.842 ] } }, { "index": 1239, "index_chain": 1239, "chain_name": "2", "nt_resnum": 1392, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1392", "linked_nts": [ "///2/1391", "///2/1393" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -67.082, "beta": 172.257, "gamma": 55.796, "delta": 81.521, "epsilon": -157.574, "zeta": -72.909, "epsilon_zeta": -84.665, "bb_type": "BI", "chi": -164.670, "glyco_bond": "anti", "C5prime_xyz": [ -1.481, 8.706, 0.802 ], "P_xyz": [ 1.080, 9.164, 1.128 ], "form": "A", "ssZp": 4.451, "Dp": 4.532, "splay_angle": 19.916, "splay_distance": 3.180, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 165.254, "theta": -150.825, "eta_prime": 179.854, "theta_prime": -152.047, "eta_base": -144.693, "theta_base": -132.176, "v0": 1.406, "v1": -23.287, "v2": 35.057, "v3": -35.200, "v4": 21.305, "amplitude": 36.549, "phase_angle": 16.428, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.986, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 155.433, 216.162, 242.421 ], "x_axis": [ -0.134, -0.903, -0.408 ], "y_axis": [ 0.401, -0.426, 0.811 ], "z_axis": [ -0.906, -0.055, 0.419 ], "quaternion": [ -0.463, -0.467, 0.269, 0.703 ] } }, { "index": 1240, "index_chain": 1240, "chain_name": "2", "nt_resnum": 1393, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1393", "linked_nts": [ "///2/1392", "///2/1394" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -66.021, "beta": 174.599, "gamma": 52.482, "delta": 82.034, "epsilon": -145.232, "zeta": -75.170, "epsilon_zeta": -70.062, "bb_type": "BI", "chi": -163.309, "glyco_bond": "anti", "C5prime_xyz": [ -1.403, 8.766, 0.725 ], "P_xyz": [ 1.147, 9.188, 1.189 ], "form": "A", "ssZp": 4.430, "Dp": 4.594, "splay_angle": 25.677, "splay_distance": 4.055, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 168.834, "theta": -143.614, "eta_prime": 179.048, "theta_prime": -139.911, "eta_base": -147.999, "theta_base": -109.090, "v0": 0.971, "v1": -22.447, "v2": 34.178, "v3": -34.595, "v4": 21.210, "amplitude": 35.762, "phase_angle": 17.113, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.934, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 152.301, 216.634, 242.140 ], "x_axis": [ 0.177, -0.984, 0.018 ], "y_axis": [ 0.345, 0.079, 0.935 ], "z_axis": [ -0.922, -0.159, 0.353 ], "quaternion": [ 0.634, 0.431, -0.371, -0.524 ] } }, { "index": 1241, "index_chain": 1241, "chain_name": "2", "nt_resnum": 1394, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1394", "linked_nts": [ "///2/1393", "///2/1395" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -59.313, "beta": 179.057, "gamma": 47.995, "delta": 81.751, "epsilon": -112.021, "zeta": -68.277, "epsilon_zeta": -43.744, "bb_type": "--", "chi": -143.677, "glyco_bond": "anti", "C5prime_xyz": [ -1.216, 8.719, -0.457 ], "P_xyz": [ 1.379, 9.074, -0.578 ], "form": ".", "ssZp": 3.405, "Dp": 4.778, "splay_angle": 42.534, "splay_distance": 7.176, "splay_ratio": 0.363, "d22": null, "d64": null, "eta": -179.403, "theta": -113.911, "eta_prime": -170.198, "theta_prime": -103.919, "eta_base": -134.117, "theta_base": -102.193, "v0": 4.229, "v1": -25.830, "v2": 36.459, "v3": -35.018, "v4": 19.418, "amplitude": 37.309, "phase_angle": 12.257, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.918, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 148.780, 214.712, 242.735 ], "x_axis": [ 0.352, -0.734, 0.581 ], "y_axis": [ 0.039, 0.632, 0.774 ], "z_axis": [ -0.935, -0.250, 0.251 ], "quaternion": [ 0.747, 0.342, -0.507, -0.259 ] } }, { "index": 1242, "index_chain": 1242, "chain_name": "2", "nt_resnum": 1395, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1395", "linked_nts": [ "///2/1394", "///2/1396" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,cap-donor", "alpha": -62.389, "beta": -141.221, "gamma": 37.137, "delta": 145.349, "epsilon": -123.884, "zeta": -136.830, "epsilon_zeta": 12.946, "bb_type": "--", "chi": -90.828, "glyco_bond": "anti", "C5prime_xyz": [ -2.517, 7.815, -2.499 ], "P_xyz": [ -0.772, 9.771, -2.417 ], "form": ".", "ssZp": 1.156, "Dp": 1.421, "splay_angle": 31.985, "splay_distance": 5.456, "splay_ratio": 0.293, "d22": null, "d64": null, "eta": -173.476, "theta": -143.562, "eta_prime": -152.186, "theta_prime": -166.146, "eta_base": -149.312, "theta_base": -90.533, "v0": -22.584, "v1": 36.221, "v2": -35.372, "v3": 23.209, "v4": -0.603, "amplitude": 37.154, "phase_angle": 162.180, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.350, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 144.876, 210.812, 247.322 ], "x_axis": [ 0.977, -0.161, 0.140 ], "y_axis": [ 0.081, 0.886, 0.457 ], "z_axis": [ -0.198, -0.435, 0.878 ], "quaternion": [ 0.967, 0.231, -0.087, -0.063 ] } }, { "index": 1243, "index_chain": 1243, "chain_name": "2", "nt_resnum": 1396, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1396", "linked_nts": [ "///2/1395", "///2/1397" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 26.509, "beta": -116.676, "gamma": -116.159, "delta": 144.152, "epsilon": -119.992, "zeta": -69.784, "epsilon_zeta": -50.208, "bb_type": "--", "chi": 64.717, "glyco_bond": "syn", "C5prime_xyz": [ -5.329, 4.102, 1.427 ], "P_xyz": [ -6.277, 3.894, 3.857 ], "form": ".", "ssZp": -1.458, "Dp": 1.470, "splay_angle": 106.808, "splay_distance": 15.606, "splay_ratio": 0.803, "d22": null, "d64": null, "eta": -157.544, "theta": -90.658, "eta_prime": -173.753, "theta_prime": -75.950, "eta_base": -96.779, "theta_base": -59.015, "v0": -22.968, "v1": 35.816, "v2": -34.296, "v3": 21.934, "v4": 0.463, "amplitude": 36.376, "phase_angle": 160.531, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 145.159, 212.319, 252.558 ], "x_axis": [ 0.388, -0.743, -0.546 ], "y_axis": [ -0.894, -0.160, -0.418 ], "z_axis": [ 0.223, 0.650, -0.726 ], "quaternion": [ -0.354, 0.754, -0.543, -0.107 ] } }, { "index": 1244, "index_chain": 1244, "chain_name": "2", "nt_resnum": 1397, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1397", "linked_nts": [ "///2/1396", "///2/1398" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,internal-loop,splayed-apart", "alpha": 89.149, "beta": 116.330, "gamma": -13.213, "delta": 147.066, "epsilon": -100.883, "zeta": 34.621, "epsilon_zeta": 224.496, "bb_type": "--", "chi": -120.417, "glyco_bond": "anti", "C5prime_xyz": [ -1.805, 8.492, -1.176 ], "P_xyz": [ -0.231, 9.479, 0.689 ], "form": ".", "ssZp": 0.896, "Dp": 1.010, "splay_angle": 105.406, "splay_distance": 17.148, "splay_ratio": 0.796, "d22": null, "d64": null, "eta": -154.844, "theta": 82.457, "eta_prime": -108.581, "theta_prime": 47.176, "eta_base": -114.119, "theta_base": 52.254, "v0": -19.595, "v1": 34.103, "v2": -34.818, "v3": 24.398, "v4": -3.213, "amplitude": 35.835, "phase_angle": 166.318, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 135.282, 221.932, 259.880 ], "x_axis": [ 0.421, 0.615, -0.667 ], "y_axis": [ 0.108, -0.764, -0.636 ], "z_axis": [ -0.901, 0.196, -0.388 ], "quaternion": [ -0.259, 0.802, 0.225, -0.489 ] } }, { "index": 1245, "index_chain": 1245, "chain_name": "2", "nt_resnum": 1398, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1398", "linked_nts": [ "///2/1397", "///2/1399" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 94.248, "beta": 133.107, "gamma": -164.583, "delta": 79.910, "epsilon": -137.298, "zeta": -70.487, "epsilon_zeta": -66.811, "bb_type": "BI", "chi": -175.141, "glyco_bond": "anti", "C5prime_xyz": [ -1.455, 8.550, 1.400 ], "P_xyz": [ -1.559, 11.160, 1.160 ], "form": "A", "ssZp": 4.705, "Dp": 4.725, "splay_angle": 26.435, "splay_distance": 4.323, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 108.302, "theta": 169.923, "eta_prime": 111.299, "theta_prime": -173.454, "eta_base": 119.722, "theta_base": -137.076, "v0": 3.258, "v1": -25.729, "v2": 37.235, "v3": -36.350, "v4": 20.849, "amplitude": 38.347, "phase_angle": 13.830, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6j", "suiteness": 0.190, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 142.598, 207.304, 254.726 ], "x_axis": [ 0.593, 0.800, 0.086 ], "y_axis": [ -0.796, 0.567, 0.213 ], "z_axis": [ 0.122, -0.195, 0.973 ], "quaternion": [ 0.885, 0.115, 0.010, 0.451 ] } }, { "index": 1246, "index_chain": 1246, "chain_name": "2", "nt_resnum": 1399, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1399", "linked_nts": [ "///2/1398", "///2/1400" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -63.622, "beta": -168.932, "gamma": 39.601, "delta": 79.202, "epsilon": -147.328, "zeta": -84.537, "epsilon_zeta": -62.791, "bb_type": "BI", "chi": -158.084, "glyco_bond": "anti", "C5prime_xyz": [ -1.401, 8.825, 0.395 ], "P_xyz": [ 0.964, 9.581, 1.230 ], "form": "A", "ssZp": 4.376, "Dp": 4.642, "splay_angle": 21.433, "splay_distance": 3.434, "splay_ratio": 0.187, "d22": 4.519, "d64": 4.300, "eta": 165.245, "theta": -161.965, "eta_prime": 175.713, "theta_prime": -156.851, "eta_base": -147.514, "theta_base": -145.936, "v0": 0.911, "v1": -23.698, "v2": 36.205, "v3": -36.710, "v4": 22.546, "amplitude": 37.915, "phase_angle": 17.273, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.598, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 145.522, 206.799, 257.870 ], "x_axis": [ -0.054, 0.992, -0.115 ], "y_axis": [ -0.988, -0.036, 0.151 ], "z_axis": [ 0.145, 0.122, 0.982 ], "quaternion": [ 0.688, 0.011, 0.095, 0.720 ] } }, { "index": 1247, "index_chain": 1247, "chain_name": "2", "nt_resnum": 1400, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1400", "linked_nts": [ "///2/1399", "///2/1401" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -65.253, "beta": 170.316, "gamma": 52.089, "delta": 80.730, "epsilon": -135.753, "zeta": -91.420, "epsilon_zeta": -44.333, "bb_type": "BI", "chi": -155.427, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.777, 0.241 ], "P_xyz": [ 1.101, 9.293, 0.259 ], "form": ".", "ssZp": 4.224, "Dp": 4.679, "splay_angle": 30.107, "splay_distance": 4.814, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": 167.670, "theta": -112.863, "eta_prime": 173.212, "theta_prime": -118.052, "eta_base": -172.340, "theta_base": -78.706, "v0": 1.118, "v1": -23.333, "v2": 35.421, "v3": -35.782, "v4": 21.872, "amplitude": 37.028, "phase_angle": 16.939, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.857, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 147.558, 206.651, 260.632 ], "x_axis": [ -0.447, 0.839, -0.312 ], "y_axis": [ -0.878, -0.345, 0.330 ], "z_axis": [ 0.169, 0.422, 0.891 ], "quaternion": [ 0.524, -0.043, 0.230, 0.819 ] } }, { "index": 1248, "index_chain": 1248, "chain_name": "2", "nt_resnum": 1401, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1401", "linked_nts": [ "///2/1400", "///2/1402" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": 169.609, "beta": -140.691, "gamma": 148.490, "delta": 84.091, "epsilon": -101.251, "zeta": -170.172, "epsilon_zeta": 68.921, "bb_type": "BII", "chi": -169.141, "glyco_bond": "anti", "C5prime_xyz": [ -1.521, 8.630, 1.067 ], "P_xyz": [ 0.728, 9.284, -0.110 ], "form": ".", "ssZp": 4.294, "Dp": 4.595, "splay_angle": 31.653, "splay_distance": 5.030, "splay_ratio": 0.275, "d22": null, "d64": null, "eta": 156.256, "theta": -171.797, "eta_prime": 178.652, "theta_prime": -172.495, "eta_base": -126.994, "theta_base": -167.983, "v0": 0.564, "v1": -21.433, "v2": 32.859, "v3": -33.479, "v4": 20.800, "amplitude": 34.493, "phase_angle": 17.704, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 145.562, 210.645, 262.430 ], "x_axis": [ -0.900, -0.047, -0.433 ], "y_axis": [ -0.257, -0.745, 0.616 ], "z_axis": [ -0.351, 0.666, 0.658 ], "quaternion": [ 0.058, -0.216, 0.352, 0.909 ] } }, { "index": 1249, "index_chain": 1249, "chain_name": "2", "nt_resnum": 1402, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1402", "linked_nts": [ "///2/1401", "///2/1403" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,A-minor,splayed-apart", "alpha": 103.353, "beta": -96.679, "gamma": 167.907, "delta": 84.134, "epsilon": -134.114, "zeta": -158.882, "epsilon_zeta": 24.768, "bb_type": "--", "chi": -177.442, "glyco_bond": "anti", "C5prime_xyz": [ -1.447, 8.452, 1.554 ], "P_xyz": [ 0.400, 8.841, -0.271 ], "form": ".", "ssZp": 4.587, "Dp": 4.629, "splay_angle": 169.414, "splay_distance": 18.019, "splay_ratio": 0.996, "d22": null, "d64": null, "eta": 158.903, "theta": 161.153, "eta_prime": 173.364, "theta_prime": 117.742, "eta_base": -173.686, "theta_base": -148.637, "v0": 2.077, "v1": -22.594, "v2": 33.304, "v3": -33.053, "v4": 19.566, "amplitude": 34.520, "phase_angle": 15.252, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 146.605, 214.357, 265.660 ], "x_axis": [ -0.912, -0.168, -0.374 ], "y_axis": [ -0.153, -0.706, 0.692 ], "z_axis": [ -0.380, 0.688, 0.618 ], "quaternion": [ -0.004, -0.209, 0.383, 0.900 ] } }, { "index": 1250, "index_chain": 1250, "chain_name": "2", "nt_resnum": 1403, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1403", "linked_nts": [ "///2/1402", "///2/1404" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 76.775, "beta": -174.548, "gamma": 72.832, "delta": 147.165, "epsilon": -153.740, "zeta": 137.319, "epsilon_zeta": 68.941, "bb_type": "--", "chi": -143.457, "glyco_bond": "anti", "C5prime_xyz": [ -1.776, 8.774, 0.048 ], "P_xyz": [ 0.550, 9.178, 1.201 ], "form": ".", "ssZp": 1.691, "Dp": 1.931, "splay_angle": 166.450, "splay_distance": 19.095, "splay_ratio": 0.993, "d22": 12.575, "d64": 15.950, "eta": -18.134, "theta": 136.806, "eta_prime": 8.886, "theta_prime": 86.316, "eta_base": -105.066, "theta_base": 159.517, "v0": -21.430, "v1": 35.838, "v2": -35.750, "v3": 24.294, "v4": -1.989, "amplitude": 37.140, "phase_angle": 164.272, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.331, "filter_rmsd": 0.062, "frame": { "rmsd": 0.001, "origin": [ 147.558, 214.285, 283.654 ], "x_axis": [ -0.997, -0.075, -0.020 ], "y_axis": [ 0.016, 0.050, -0.999 ], "z_axis": [ 0.076, -0.996, -0.049 ], "quaternion": [ 0.033, -0.020, 0.724, -0.689 ] } }, { "index": 1251, "index_chain": 1251, "chain_name": "2", "nt_resnum": 1404, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1404", "linked_nts": [ "///2/1403", "///2/1405" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 38.973, "beta": -147.179, "gamma": 47.232, "delta": 145.700, "epsilon": -99.668, "zeta": -99.893, "epsilon_zeta": 0.225, "bb_type": "--", "chi": -142.689, "glyco_bond": "anti", "C5prime_xyz": [ -1.865, 8.731, -0.010 ], "P_xyz": [ -0.439, 9.580, 2.026 ], "form": ".", "ssZp": 0.931, "Dp": 0.943, "splay_angle": 118.404, "splay_distance": 16.868, "splay_ratio": 0.859, "d22": null, "d64": null, "eta": -19.610, "theta": -90.020, "eta_prime": -14.945, "theta_prime": -100.293, "eta_base": -98.162, "theta_base": -77.450, "v0": -21.584, "v1": 35.410, "v2": -34.968, "v3": 23.414, "v4": -1.358, "amplitude": 36.502, "phase_angle": 163.332, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 161.939, 213.372, 271.125 ], "x_axis": [ 0.384, -0.791, 0.477 ], "y_axis": [ -0.692, 0.095, 0.716 ], "z_axis": [ -0.611, -0.605, -0.511 ], "quaternion": [ 0.492, 0.671, -0.553, -0.050 ] } }, { "index": 1252, "index_chain": 1252, "chain_name": "2", "nt_resnum": 1405, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1405", "linked_nts": [ "///2/1404", "///2/1406" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor,splayed-apart", "alpha": -67.526, "beta": -146.172, "gamma": 44.632, "delta": 79.333, "epsilon": -160.033, "zeta": -75.046, "epsilon_zeta": -84.987, "bb_type": "BI", "chi": -160.655, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.745, 0.541 ], "P_xyz": [ 0.686, 9.401, 1.832 ], "form": ".", "ssZp": 4.437, "Dp": 4.565, "splay_angle": 19.064, "splay_distance": 3.693, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": -172.204, "theta": -130.257, "eta_prime": -152.086, "theta_prime": -134.289, "eta_base": -133.024, "theta_base": -115.625, "v0": 1.340, "v1": -24.042, "v2": 36.354, "v3": -36.575, "v4": 22.216, "amplitude": 37.940, "phase_angle": 16.625, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.386, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 145.231, 215.252, 269.772 ], "x_axis": [ -0.048, -0.574, 0.818 ], "y_axis": [ 0.950, 0.227, 0.215 ], "z_axis": [ -0.309, 0.787, 0.534 ], "quaternion": [ 0.654, -0.219, -0.430, -0.582 ] } }, { "index": 1253, "index_chain": 1253, "chain_name": "2", "nt_resnum": 1406, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1406", "linked_nts": [ "///2/1405", "///2/1407" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": 147.028, "beta": -156.407, "gamma": -172.427, "delta": 80.023, "epsilon": -155.194, "zeta": -75.127, "epsilon_zeta": -80.068, "bb_type": "BI", "chi": -166.796, "glyco_bond": "anti", "C5prime_xyz": [ -1.609, 8.754, 0.898 ], "P_xyz": [ -0.520, 10.589, -0.633 ], "form": "A", "ssZp": 4.517, "Dp": 4.572, "splay_angle": 25.031, "splay_distance": 3.917, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 170.158, "theta": 177.423, "eta_prime": -174.051, "theta_prime": -177.249, "eta_base": -140.352, "theta_base": -147.512, "v0": 0.574, "v1": -23.323, "v2": 35.906, "v3": -36.571, "v4": 22.708, "amplitude": 37.701, "phase_angle": 17.754, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.817, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 142.095, 215.702, 271.670 ], "x_axis": [ 0.293, -0.415, 0.861 ], "y_axis": [ 0.787, 0.617, 0.029 ], "z_axis": [ -0.543, 0.669, 0.507 ], "quaternion": [ 0.777, -0.206, -0.452, -0.386 ] } }, { "index": 1254, "index_chain": 1254, "chain_name": "2", "nt_resnum": 1407, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1407", "linked_nts": [ "///2/1406", "///2/1408" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.248, "beta": 169.534, "gamma": 56.471, "delta": 80.252, "epsilon": -146.383, "zeta": -75.211, "epsilon_zeta": -71.172, "bb_type": "BI", "chi": -169.667, "glyco_bond": "anti", "C5prime_xyz": [ -1.422, 8.642, 1.102 ], "P_xyz": [ 1.149, 9.021, 1.453 ], "form": "A", "ssZp": 4.588, "Dp": 4.640, "splay_angle": 25.387, "splay_distance": 3.951, "splay_ratio": 0.221, "d22": 4.137, "d64": 4.305, "eta": 173.345, "theta": -144.731, "eta_prime": -174.876, "theta_prime": -143.379, "eta_base": -136.116, "theta_base": -113.791, "v0": 1.732, "v1": -24.063, "v2": 36.015, "v3": -35.975, "v4": 21.585, "amplitude": 37.465, "phase_angle": 15.991, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.937, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 139.027, 216.875, 273.804 ], "x_axis": [ 0.672, -0.043, 0.739 ], "y_axis": [ 0.542, 0.709, -0.452 ], "z_axis": [ -0.504, 0.704, 0.500 ], "quaternion": [ 0.849, -0.340, -0.366, -0.172 ] } }, { "index": 1255, "index_chain": 1255, "chain_name": "2", "nt_resnum": 1408, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1408", "linked_nts": [ "///2/1407", "///2/1409" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -58.003, "beta": 167.564, "gamma": 53.476, "delta": 80.815, "epsilon": -162.351, "zeta": -81.759, "epsilon_zeta": -80.592, "bb_type": "BI", "chi": -172.082, "glyco_bond": "anti", "C5prime_xyz": [ -1.465, 8.589, 1.247 ], "P_xyz": [ 1.089, 8.922, 1.728 ], "form": "A", "ssZp": 4.512, "Dp": 4.523, "splay_angle": 23.004, "splay_distance": 3.519, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 167.633, "theta": -129.797, "eta_prime": -175.519, "theta_prime": -135.973, "eta_base": -127.739, "theta_base": -94.034, "v0": 1.983, "v1": -24.026, "v2": 35.707, "v3": -35.569, "v4": 21.180, "amplitude": 37.077, "phase_angle": 15.628, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.939, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 137.224, 218.394, 276.975 ], "x_axis": [ 0.907, 0.306, 0.289 ], "y_axis": [ 0.078, 0.552, -0.830 ], "z_axis": [ -0.413, 0.776, 0.477 ], "quaternion": [ 0.857, -0.469, -0.205, 0.067 ] } }, { "index": 1256, "index_chain": 1256, "chain_name": "2", "nt_resnum": 1409, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1409", "linked_nts": [ "///2/1408", "///2/1410" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": 178.822, "beta": -145.818, "gamma": 138.736, "delta": 82.360, "epsilon": -122.770, "zeta": -90.853, "epsilon_zeta": -31.917, "bb_type": "--", "chi": 172.725, "glyco_bond": "anti", "C5prime_xyz": [ -1.463, 8.163, 2.072 ], "P_xyz": [ 1.047, 8.767, 1.631 ], "form": "A", "ssZp": 4.706, "Dp": 4.735, "splay_angle": 23.038, "splay_distance": 3.502, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 154.897, "theta": -144.574, "eta_prime": 173.881, "theta_prime": -146.188, "eta_base": -122.125, "theta_base": -119.843, "v0": 3.917, "v1": -24.932, "v2": 35.300, "v3": -34.036, "v4": 19.011, "amplitude": 36.165, "phase_angle": 12.556, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 137.549, 220.814, 279.509 ], "x_axis": [ 0.742, 0.477, -0.471 ], "y_axis": [ -0.605, 0.173, -0.777 ], "z_axis": [ -0.289, 0.862, 0.417 ], "quaternion": [ 0.764, -0.537, 0.059, 0.354 ] } }, { "index": 1257, "index_chain": 1257, "chain_name": "2", "nt_resnum": 1410, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1410", "linked_nts": [ "///2/1409", "///2/1411" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.542, "beta": 162.029, "gamma": 50.443, "delta": 81.324, "epsilon": -155.547, "zeta": -75.343, "epsilon_zeta": -80.205, "bb_type": "BI", "chi": -171.510, "glyco_bond": "anti", "C5prime_xyz": [ -1.227, 8.565, 1.220 ], "P_xyz": [ 1.377, 8.665, 1.498 ], "form": ".", "ssZp": 4.617, "Dp": 4.623, "splay_angle": 23.720, "splay_distance": 3.823, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 158.656, "theta": -150.411, "eta_prime": 173.814, "theta_prime": -152.857, "eta_base": -139.948, "theta_base": -149.929, "v0": 4.651, "v1": -26.528, "v2": 37.128, "v3": -35.436, "v4": 19.414, "amplitude": 37.916, "phase_angle": 11.704, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.501, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 137.992, 223.467, 281.751 ], "x_axis": [ 0.215, 0.417, -0.883 ], "y_axis": [ -0.944, -0.144, -0.298 ], "z_axis": [ -0.251, 0.897, 0.363 ], "quaternion": [ 0.599, -0.499, 0.264, 0.568 ] } }, { "index": 1258, "index_chain": 1258, "chain_name": "2", "nt_resnum": 1411, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1411", "linked_nts": [ "///2/1410", "///2/1412" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.299, "beta": 177.301, "gamma": 51.685, "delta": 79.866, "epsilon": -149.608, "zeta": -72.848, "epsilon_zeta": -76.760, "bb_type": "BI", "chi": -170.904, "glyco_bond": "anti", "C5prime_xyz": [ -1.583, 8.719, 1.130 ], "P_xyz": [ 0.871, 9.263, 1.878 ], "form": "A", "ssZp": 4.549, "Dp": 4.591, "splay_angle": 22.733, "splay_distance": 3.610, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 170.968, "theta": -147.449, "eta_prime": 178.533, "theta_prime": -144.727, "eta_base": -165.106, "theta_base": -111.957, "v0": -0.238, "v1": -22.402, "v2": 35.216, "v3": -36.316, "v4": 23.055, "amplitude": 37.234, "phase_angle": 18.947, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.950, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 139.605, 225.754, 284.355 ], "x_axis": [ -0.099, 0.199, -0.975 ], "y_axis": [ -0.966, -0.253, 0.046 ], "z_axis": [ -0.237, 0.947, 0.218 ], "quaternion": [ 0.465, -0.484, 0.396, 0.626 ] } }, { "index": 1259, "index_chain": 1259, "chain_name": "2", "nt_resnum": 1412, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1412", "linked_nts": [ "///2/1411", "///2/1413" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -62.541, "beta": 168.306, "gamma": 57.009, "delta": 80.839, "epsilon": -152.309, "zeta": -67.624, "epsilon_zeta": -84.685, "bb_type": "BI", "chi": -167.514, "glyco_bond": "anti", "C5prime_xyz": [ -1.490, 8.745, 0.961 ], "P_xyz": [ 1.078, 9.186, 1.258 ], "form": "A", "ssZp": 4.508, "Dp": 4.567, "splay_angle": 27.878, "splay_distance": 4.330, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 168.724, "theta": -142.231, "eta_prime": -175.512, "theta_prime": -142.436, "eta_base": -127.760, "theta_base": -108.956, "v0": 0.426, "v1": -22.716, "v2": 35.077, "v3": -35.788, "v4": 22.304, "amplitude": 36.870, "phase_angle": 17.939, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.963, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 140.137, 229.304, 283.973 ], "x_axis": [ -0.645, 0.015, -0.764 ], "y_axis": [ -0.730, -0.308, 0.610 ], "z_axis": [ -0.226, 0.951, 0.210 ], "quaternion": [ 0.254, -0.337, 0.531, 0.735 ] } }, { "index": 1260, "index_chain": 1260, "chain_name": "2", "nt_resnum": 1413, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1413", "linked_nts": [ "///2/1412", "///2/1414" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -67.443, "beta": -177.705, "gamma": 47.440, "delta": 81.030, "epsilon": -139.693, "zeta": -81.439, "epsilon_zeta": -58.253, "bb_type": "BI", "chi": -177.127, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.501, 1.530 ], "P_xyz": [ 1.033, 8.676, 2.591 ], "form": "A", "ssZp": 4.682, "Dp": 4.691, "splay_angle": 24.223, "splay_distance": 3.738, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 167.636, "theta": -147.429, "eta_prime": 179.438, "theta_prime": -142.984, "eta_base": -131.545, "theta_base": -117.434, "v0": 3.275, "v1": -24.958, "v2": 35.987, "v3": -35.105, "v4": 20.064, "amplitude": 37.036, "phase_angle": 13.668, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 139.057, 233.420, 283.168 ], "x_axis": [ -0.845, -0.466, -0.261 ], "y_axis": [ -0.057, -0.406, 0.912 ], "z_axis": [ -0.531, 0.786, 0.317 ], "quaternion": [ -0.128, -0.247, 0.530, 0.801 ] } }, { "index": 1261, "index_chain": 1261, "chain_name": "2", "nt_resnum": 1414, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1414", "linked_nts": [ "///2/1413", "///2/1415" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.451, "beta": 173.692, "gamma": 44.357, "delta": 81.100, "epsilon": -135.365, "zeta": -86.398, "epsilon_zeta": -48.967, "bb_type": "BI", "chi": -173.416, "glyco_bond": "anti", "C5prime_xyz": [ -1.411, 8.498, 1.318 ], "P_xyz": [ 1.067, 8.760, 2.128 ], "form": "A", "ssZp": 4.671, "Dp": 4.722, "splay_angle": 23.748, "splay_distance": 3.741, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 167.916, "theta": -148.476, "eta_prime": 177.040, "theta_prime": -144.270, "eta_base": -147.524, "theta_base": -124.700, "v0": 3.737, "v1": -25.559, "v2": 36.482, "v3": -35.338, "v4": 19.935, "amplitude": 37.446, "phase_angle": 13.027, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.783, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 137.127, 236.549, 282.494 ], "x_axis": [ -0.605, -0.768, 0.209 ], "y_axis": [ 0.451, -0.115, 0.885 ], "z_axis": [ -0.656, 0.630, 0.416 ], "quaternion": [ -0.417, -0.153, 0.518, 0.731 ] } }, { "index": 1262, "index_chain": 1262, "chain_name": "2", "nt_resnum": 1415, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1415", "linked_nts": [ "///2/1414", "///2/1416" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -62.142, "beta": 171.043, "gamma": 50.239, "delta": 80.636, "epsilon": -158.864, "zeta": -78.190, "epsilon_zeta": -80.673, "bb_type": "BI", "chi": -164.778, "glyco_bond": "anti", "C5prime_xyz": [ -1.356, 8.734, 0.810 ], "P_xyz": [ 1.207, 9.125, 1.185 ], "form": "A", "ssZp": 4.495, "Dp": 4.563, "splay_angle": 22.926, "splay_distance": 3.591, "splay_ratio": 0.200, "d22": 4.723, "d64": 4.741, "eta": 164.071, "theta": -157.881, "eta_prime": 174.647, "theta_prime": -157.892, "eta_base": -154.485, "theta_base": -145.587, "v0": 2.182, "v1": -24.469, "v2": 36.194, "v3": -35.934, "v4": 21.288, "amplitude": 37.532, "phase_angle": 15.347, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.775, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 134.007, 238.585, 282.152 ], "x_axis": [ -0.115, -0.843, 0.525 ], "y_axis": [ 0.650, 0.336, 0.682 ], "z_axis": [ -0.751, 0.420, 0.510 ], "quaternion": [ 0.658, 0.099, -0.485, -0.568 ] } }, { "index": 1263, "index_chain": 1263, "chain_name": "2", "nt_resnum": 1416, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1416", "linked_nts": [ "///2/1415", "///2/1417" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate", "alpha": -63.850, "beta": 175.096, "gamma": 53.105, "delta": 81.479, "epsilon": -145.913, "zeta": -71.829, "epsilon_zeta": -74.084, "bb_type": "BI", "chi": -163.033, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.724, 0.707 ], "P_xyz": [ 1.348, 9.033, 1.030 ], "form": "A", "ssZp": 4.487, "Dp": 4.651, "splay_angle": 21.601, "splay_distance": 3.407, "splay_ratio": 0.188, "d22": 4.006, "d64": 3.881, "eta": 171.806, "theta": -141.271, "eta_prime": 178.779, "theta_prime": -139.505, "eta_base": -159.217, "theta_base": -104.515, "v0": 2.933, "v1": -24.688, "v2": 35.856, "v3": -35.148, "v4": 20.316, "amplitude": 36.980, "phase_angle": 14.160, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.901, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 130.633, 239.797, 281.951 ], "x_axis": [ 0.211, -0.651, 0.729 ], "y_axis": [ 0.588, 0.680, 0.438 ], "z_axis": [ -0.781, 0.336, 0.526 ], "quaternion": [ 0.778, 0.033, -0.485, -0.398 ] } }, { "index": 1264, "index_chain": 1264, "chain_name": "2", "nt_resnum": 1417, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1417", "linked_nts": [ "///2/1416", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -63.653, "beta": 168.230, "gamma": 55.171, "delta": 81.104, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -160.168, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.761, 0.535 ], "P_xyz": [ 1.305, 9.093, 0.534 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 2.547, "v1": -24.450, "v2": 35.845, "v3": -35.353, "v4": 20.679, "amplitude": 37.066, "phase_angle": 14.745, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.981, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 128.202, 239.244, 284.273 ], "x_axis": [ 0.593, -0.127, 0.795 ], "y_axis": [ 0.240, 0.970, -0.024 ], "z_axis": [ -0.768, 0.205, 0.606 ], "quaternion": [ 0.890, -0.065, -0.439, -0.103 ] } }, { "index": 1265, "index_chain": 1265, "chain_name": "2", "nt_resnum": 1423, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1423", "linked_nts": [ null, "///2/1424" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop", "alpha": null, "beta": -119.281, "gamma": 171.168, "delta": 82.253, "epsilon": -93.409, "zeta": -126.742, "epsilon_zeta": 33.333, "bb_type": "--", "chi": -162.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.729, 0.694 ], "P_xyz": [ 0.287, 9.247, -1.350 ], "form": ".", "ssZp": 4.084, "Dp": 4.685, "splay_angle": 36.030, "splay_distance": 5.670, "splay_ratio": 0.316, "d22": null, "d64": null, "eta": null, "theta": -168.250, "eta_prime": null, "theta_prime": -160.897, "eta_base": null, "theta_base": -129.853, "v0": 2.709, "v1": -24.297, "v2": 35.418, "v3": -34.840, "v4": 20.279, "amplitude": 36.577, "phase_angle": 14.462, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 125.862, 243.918, 283.148 ], "x_axis": [ 0.439, -0.071, 0.896 ], "y_axis": [ -0.459, -0.875, 0.156 ], "z_axis": [ 0.773, -0.479, -0.417 ], "quaternion": [ 0.192, 0.826, -0.160, 0.505 ] } }, { "index": 1266, "index_chain": 1266, "chain_name": "2", "nt_resnum": 1424, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1424", "linked_nts": [ "///2/1423", "///2/1425" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -51.530, "beta": 115.669, "gamma": 72.908, "delta": 82.346, "epsilon": -152.736, "zeta": -70.416, "epsilon_zeta": -82.319, "bb_type": "BI", "chi": -160.301, "glyco_bond": "anti", "C5prime_xyz": [ -1.128, 8.643, 0.530 ], "P_xyz": [ 0.912, 8.247, -1.075 ], "form": "A", "ssZp": 4.489, "Dp": 4.676, "splay_angle": 27.876, "splay_distance": 4.289, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 162.445, "theta": -133.529, "eta_prime": -173.331, "theta_prime": -149.690, "eta_base": -130.841, "theta_base": -134.914, "v0": 6.654, "v1": -28.046, "v2": 37.625, "v3": -34.814, "v4": 17.782, "amplitude": 38.072, "phase_angle": 8.786, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.182, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 130.183, 240.341, 282.321 ], "x_axis": [ 0.099, -0.552, 0.828 ], "y_axis": [ -0.648, -0.667, -0.367 ], "z_axis": [ 0.755, -0.501, -0.424 ], "quaternion": [ 0.045, 0.740, -0.406, 0.535 ] } }, { "index": 1267, "index_chain": 1267, "chain_name": "2", "nt_resnum": 1425, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1425", "linked_nts": [ "///2/1424", "///2/1426" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.964, "beta": 179.404, "gamma": 52.922, "delta": 80.139, "epsilon": -139.322, "zeta": -112.676, "epsilon_zeta": -26.646, "bb_type": "--", "chi": 178.231, "glyco_bond": "anti", "C5prime_xyz": [ -1.465, 8.391, 1.762 ], "P_xyz": [ 0.995, 8.581, 2.663 ], "form": "A", "ssZp": 4.723, "Dp": 4.722, "splay_angle": 26.239, "splay_distance": 3.998, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 167.496, "theta": -155.198, "eta_prime": 177.637, "theta_prime": -148.101, "eta_base": -142.794, "theta_base": -129.620, "v0": 4.082, "v1": -26.340, "v2": 37.418, "v3": -36.057, "v4": 20.151, "amplitude": 38.344, "phase_angle": 12.621, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 134.089, 238.602, 281.982 ], "x_axis": [ -0.560, -0.522, 0.643 ], "y_axis": [ -0.696, -0.125, -0.707 ], "z_axis": [ 0.450, -0.844, -0.294 ], "quaternion": [ -0.074, -0.463, 0.657, -0.590 ] } }, { "index": 1268, "index_chain": 1268, "chain_name": "2", "nt_resnum": 1426, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1426", "linked_nts": [ "///2/1425", "///2/1427" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 1.585, "beta": 139.796, "gamma": 21.951, "delta": 81.869, "epsilon": -154.692, "zeta": -72.246, "epsilon_zeta": -82.447, "bb_type": "BI", "chi": -163.940, "glyco_bond": "anti", "C5prime_xyz": [ -1.541, 8.727, 0.755 ], "P_xyz": [ 0.948, 8.833, 1.597 ], "form": "A", "ssZp": 4.407, "Dp": 4.516, "splay_angle": 22.788, "splay_distance": 3.665, "splay_ratio": 0.200, "d22": 4.617, "d64": 4.620, "eta": 179.803, "theta": -143.387, "eta_prime": -171.186, "theta_prime": -143.348, "eta_base": -147.226, "theta_base": -121.865, "v0": 0.269, "v1": -21.883, "v2": 33.885, "v3": -34.693, "v4": 21.715, "amplitude": 35.667, "phase_angle": 18.184, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 137.335, 236.333, 282.527 ], "x_axis": [ -0.835, -0.484, 0.263 ], "y_axis": [ -0.366, 0.131, -0.921 ], "z_axis": [ 0.411, -0.865, -0.287 ], "quaternion": [ 0.049, -0.283, 0.750, -0.595 ] } }, { "index": 1269, "index_chain": 1269, "chain_name": "2", "nt_resnum": 1427, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1427", "linked_nts": [ "///2/1426", "///2/1428" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": -64.745, "beta": 177.904, "gamma": 50.059, "delta": 79.979, "epsilon": -151.465, "zeta": -90.741, "epsilon_zeta": -60.724, "bb_type": "BI", "chi": -156.927, "glyco_bond": "anti", "C5prime_xyz": [ -1.364, 8.823, 0.329 ], "P_xyz": [ 1.190, 9.355, 0.609 ], "form": ".", "ssZp": 4.339, "Dp": 4.607, "splay_angle": 153.853, "splay_distance": 17.854, "splay_ratio": 0.974, "d22": null, "d64": null, "eta": 168.307, "theta": 173.355, "eta_prime": 179.283, "theta_prime": 138.760, "eta_base": -145.527, "theta_base": -166.542, "v0": 0.998, "v1": -23.466, "v2": 35.776, "v3": -36.194, "v4": 22.184, "amplitude": 37.435, "phase_angle": 17.119, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.952, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 138.953, 233.111, 283.185 ], "x_axis": [ -0.921, -0.302, -0.245 ], "y_axis": [ 0.148, 0.309, -0.939 ], "z_axis": [ 0.359, -0.902, -0.240 ], "quaternion": [ 0.192, -0.049, 0.786, -0.586 ] } }, { "index": 1270, "index_chain": 1270, "chain_name": "2", "nt_resnum": 1428, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1428", "linked_nts": [ "///2/1427", "///2/1429" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,bulge,splayed-apart", "alpha": -141.882, "beta": 112.486, "gamma": -15.535, "delta": 147.309, "epsilon": -115.003, "zeta": 118.042, "epsilon_zeta": 126.955, "bb_type": "--", "chi": -71.374, "glyco_bond": "anti", "C5prime_xyz": [ -2.973, 7.013, -2.972 ], "P_xyz": [ -1.002, 8.745, -2.970 ], "form": ".", "ssZp": 0.554, "Dp": 1.289, "splay_angle": 114.334, "splay_distance": 17.508, "splay_ratio": 0.840, "d22": null, "d64": null, "eta": 8.219, "theta": 108.979, "eta_prime": 20.107, "theta_prime": 63.158, "eta_base": -59.951, "theta_base": 45.451, "v0": -20.248, "v1": 34.710, "v2": -35.108, "v3": 24.322, "v4": -2.770, "amplitude": 36.256, "phase_angle": 165.539, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 151.147, 228.819, 270.871 ], "x_axis": [ -0.387, 0.196, -0.901 ], "y_axis": [ -0.622, 0.666, 0.412 ], "z_axis": [ 0.681, 0.720, -0.136 ], "quaternion": [ 0.534, -0.144, 0.740, 0.382 ] } }, { "index": 1271, "index_chain": 1271, "chain_name": "2", "nt_resnum": 1429, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1429", "linked_nts": [ "///2/1428", "///2/1430" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": -63.431, "beta": -132.205, "gamma": -162.653, "delta": 80.530, "epsilon": -155.402, "zeta": -73.413, "epsilon_zeta": -81.989, "bb_type": "BI", "chi": -167.262, "glyco_bond": "anti", "C5prime_xyz": [ -1.692, 8.728, 0.930 ], "P_xyz": [ -0.785, 10.377, -0.900 ], "form": "A", "ssZp": 4.520, "Dp": 4.567, "splay_angle": 23.277, "splay_distance": 3.685, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 39.598, "theta": 178.281, "eta_prime": 49.476, "theta_prime": -177.446, "eta_base": 68.285, "theta_base": -146.724, "v0": 0.582, "v1": -23.195, "v2": 35.697, "v3": -36.340, "v4": 22.532, "amplitude": 37.474, "phase_angle": 17.716, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 139.979, 229.813, 284.318 ], "x_axis": [ -0.568, -0.075, -0.820 ], "y_axis": [ 0.763, 0.325, -0.558 ], "z_axis": [ 0.308, -0.943, -0.127 ], "quaternion": [ 0.397, 0.242, 0.711, -0.528 ] } }, { "index": 1272, "index_chain": 1272, "chain_name": "2", "nt_resnum": 1430, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1430", "linked_nts": [ "///2/1429", "///2/1431" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.573, "beta": 173.276, "gamma": 56.005, "delta": 80.508, "epsilon": -145.412, "zeta": -11.954, "epsilon_zeta": -133.457, "bb_type": "--", "chi": -161.874, "glyco_bond": "anti", "C5prime_xyz": [ -1.338, 8.783, 0.633 ], "P_xyz": [ 1.246, 9.195, 0.831 ], "form": ".", "ssZp": 4.446, "Dp": 4.635, "splay_angle": 23.699, "splay_distance": 4.494, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 173.347, "theta": -98.329, "eta_prime": -175.209, "theta_prime": -118.313, "eta_base": -135.528, "theta_base": -107.849, "v0": 1.311, "v1": -23.482, "v2": 35.501, "v3": -35.739, "v4": 21.706, "amplitude": 37.053, "phase_angle": 16.639, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.953, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 139.326, 226.187, 284.237 ], "x_axis": [ -0.036, 0.091, -0.995 ], "y_axis": [ 0.964, 0.267, -0.010 ], "z_axis": [ 0.265, -0.959, -0.097 ], "quaternion": [ 0.533, 0.446, 0.592, -0.410 ] } }, { "index": 1273, "index_chain": 1273, "chain_name": "2", "nt_resnum": 1431, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1431", "linked_nts": [ "///2/1430", "///2/1432" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -159.572, "beta": 105.326, "gamma": 166.110, "delta": 81.376, "epsilon": -143.710, "zeta": -77.357, "epsilon_zeta": -66.353, "bb_type": "BI", "chi": -174.788, "glyco_bond": "anti", "C5prime_xyz": [ -1.478, 8.560, 1.386 ], "P_xyz": [ -1.598, 10.785, 0.002 ], "form": "A", "ssZp": 4.636, "Dp": 4.655, "splay_angle": 23.310, "splay_distance": 3.621, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 163.060, "theta": 157.617, "eta_prime": 174.762, "theta_prime": 175.784, "eta_base": -153.762, "theta_base": -146.012, "v0": 2.464, "v1": -24.255, "v2": 35.594, "v3": -35.187, "v4": 20.660, "amplitude": 36.831, "phase_angle": 14.891, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 137.925, 222.816, 281.616 ], "x_axis": [ 0.226, 0.479, -0.848 ], "y_axis": [ 0.933, 0.145, 0.330 ], "z_axis": [ 0.281, -0.866, -0.414 ], "quaternion": [ 0.489, 0.611, 0.577, -0.232 ] } }, { "index": 1274, "index_chain": 1274, "chain_name": "2", "nt_resnum": 1432, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1432", "linked_nts": [ "///2/1431", null ], "nt_type": "RNA", "dbn": ")", "is_broken": true, "summary": "break,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -60.516, "beta": 170.679, "gamma": 52.203, "delta": 81.257, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -165.507, "glyco_bond": "anti", "C5prime_xyz": [ -1.327, 8.645, 0.860 ], "P_xyz": [ 1.258, 8.968, 1.149 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 3.262, "v1": -25.042, "v2": 36.104, "v3": -35.219, "v4": 20.159, "amplitude": 37.160, "phase_angle": 13.693, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 137.600, 220.238, 279.094 ], "x_axis": [ 0.732, 0.477, -0.486 ], "y_axis": [ 0.628, -0.196, 0.753 ], "z_axis": [ 0.264, -0.857, -0.443 ], "quaternion": [ 0.523, 0.770, 0.359, -0.072 ] } }, { "index": 1275, "index_chain": 1275, "chain_name": "2", "nt_resnum": 1438, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1438", "linked_nts": [ null, "///2/1439" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": null, "beta": 165.988, "gamma": -63.033, "delta": 82.095, "epsilon": -175.108, "zeta": -89.582, "epsilon_zeta": -85.526, "bb_type": "BI", "chi": -168.656, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.604, 1.042 ], "P_xyz": [ -0.591, 10.453, 2.732 ], "form": "A", "ssZp": 4.389, "Dp": 4.407, "splay_angle": 22.645, "splay_distance": 3.421, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": null, "theta": 176.688, "eta_prime": null, "theta_prime": -169.063, "eta_base": null, "theta_base": -132.661, "v0": 2.828, "v1": -24.225, "v2": 35.217, "v3": -34.572, "v4": 20.033, "amplitude": 36.337, "phase_angle": 14.262, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 137.199, 218.549, 276.972 ], "x_axis": [ 0.850, 0.380, 0.364 ], "y_axis": [ -0.055, -0.625, 0.779 ], "z_axis": [ 0.524, -0.682, -0.511 ], "quaternion": [ 0.423, 0.864, 0.094, 0.257 ] } }, { "index": 1276, "index_chain": 1276, "chain_name": "2", "nt_resnum": 1439, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1439", "linked_nts": [ "///2/1438", "///2/1440" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -166.584, "beta": -137.946, "gamma": 129.168, "delta": 82.299, "epsilon": -134.733, "zeta": -88.510, "epsilon_zeta": -46.222, "bb_type": "BI", "chi": -172.529, "glyco_bond": "anti", "C5prime_xyz": [ -1.350, 8.542, 1.280 ], "P_xyz": [ 1.173, 8.723, 0.600 ], "form": "A", "ssZp": 4.608, "Dp": 4.677, "splay_angle": 23.106, "splay_distance": 3.585, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 163.359, "theta": -143.702, "eta_prime": 175.005, "theta_prime": -147.317, "eta_base": -151.374, "theta_base": -124.017, "v0": 2.723, "v1": -23.875, "v2": 34.763, "v3": -34.185, "v4": 19.856, "amplitude": 35.889, "phase_angle": 14.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 138.769, 217.457, 274.135 ], "x_axis": [ 0.670, 0.009, 0.742 ], "y_axis": [ -0.448, -0.792, 0.414 ], "z_axis": [ 0.592, -0.610, -0.526 ], "quaternion": [ 0.296, 0.864, -0.127, 0.386 ] } }, { "index": 1277, "index_chain": 1277, "chain_name": "2", "nt_resnum": 1440, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1440", "linked_nts": [ "///2/1439", "///2/1441" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -54.818, "beta": 156.125, "gamma": 57.258, "delta": 82.776, "epsilon": -154.347, "zeta": -93.522, "epsilon_zeta": -60.824, "bb_type": "BI", "chi": -162.892, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.745, 0.718 ], "P_xyz": [ 1.318, 8.916, 0.620 ], "form": ".", "ssZp": 4.425, "Dp": 4.544, "splay_angle": 28.022, "splay_distance": 4.311, "splay_ratio": 0.242, "d22": 5.090, "d64": 5.102, "eta": 168.188, "theta": -160.118, "eta_prime": -175.407, "theta_prime": -155.003, "eta_base": -132.921, "theta_base": -142.613, "v0": 1.789, "v1": -23.053, "v2": 34.328, "v3": -34.271, "v4": 20.513, "amplitude": 35.680, "phase_angle": 15.823, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.642, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 141.703, 216.436, 272.347 ], "x_axis": [ 0.307, -0.445, 0.841 ], "y_axis": [ -0.701, -0.704, -0.116 ], "z_axis": [ 0.644, -0.554, -0.528 ], "quaternion": [ 0.137, 0.797, -0.360, 0.466 ] } }, { "index": 1278, "index_chain": 1278, "chain_name": "2", "nt_resnum": 1441, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1441", "linked_nts": [ "///2/1440", "///2/1442" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -44.560, "beta": 155.242, "gamma": 75.575, "delta": 148.817, "epsilon": -90.696, "zeta": 130.334, "epsilon_zeta": 138.970, "bb_type": "BII", "chi": -138.623, "glyco_bond": "anti", "C5prime_xyz": [ -1.762, 8.679, -0.180 ], "P_xyz": [ 0.843, 8.779, 0.155 ], "form": ".", "ssZp": 0.656, "Dp": 0.687, "splay_angle": 32.434, "splay_distance": 5.471, "splay_ratio": 0.309, "d22": 7.253, "d64": 5.619, "eta": -140.293, "theta": 153.094, "eta_prime": -117.979, "theta_prime": 129.903, "eta_base": -112.370, "theta_base": 116.516, "v0": -19.823, "v1": 34.985, "v2": -35.943, "v3": 25.433, "v4": -3.729, "amplitude": 36.896, "phase_angle": 166.947, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.299, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 144.967, 215.587, 269.662 ], "x_axis": [ 0.025, -0.656, 0.754 ], "y_axis": [ -0.742, -0.518, -0.426 ], "z_axis": [ 0.670, -0.549, -0.500 ], "quaternion": [ 0.043, 0.715, -0.489, 0.498 ] } }, { "index": 1279, "index_chain": 1279, "chain_name": "2", "nt_resnum": 1442, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1442", "linked_nts": [ "///2/1441", "///2/1443" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BI,non-canonical,multiplet,internal-loop", "alpha": 158.908, "beta": -139.257, "gamma": 53.017, "delta": 83.628, "epsilon": -145.465, "zeta": -84.536, "epsilon_zeta": -60.930, "bb_type": "BI", "chi": 154.553, "glyco_bond": "--", "C5prime_xyz": [ -1.539, 7.366, 2.885 ], "P_xyz": [ -0.006, 6.081, 4.593 ], "form": ".", "ssZp": 4.174, "Dp": 4.710, "splay_angle": 38.687, "splay_distance": 5.680, "splay_ratio": 0.340, "d22": 6.393, "d64": 7.004, "eta": 117.935, "theta": -154.229, "eta_prime": 102.620, "theta_prime": -144.000, "eta_base": 107.540, "theta_base": -138.733, "v0": 10.239, "v1": -30.326, "v2": 37.860, "v3": -32.912, "v4": 14.302, "amplitude": 37.921, "phase_angle": 3.266, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.112, "frame": { "rmsd": 0.012, "origin": [ 141.251, 219.016, 267.573 ], "x_axis": [ -0.376, -0.725, 0.576 ], "y_axis": [ -0.740, -0.140, -0.658 ], "z_axis": [ 0.558, -0.674, -0.484 ], "quaternion": [ -0.007, -0.559, 0.656, -0.508 ] } }, { "index": 1280, "index_chain": 1280, "chain_name": "2", "nt_resnum": 1443, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1443", "linked_nts": [ "///2/1442", "///2/1444" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -68.477, "beta": -162.971, "gamma": 54.735, "delta": 81.003, "epsilon": -147.379, "zeta": -38.361, "epsilon_zeta": -109.018, "bb_type": "BI", "chi": 178.807, "glyco_bond": "anti", "C5prime_xyz": [ -1.359, 8.430, 1.737 ], "P_xyz": [ 0.923, 8.455, 3.036 ], "form": ".", "ssZp": 4.633, "Dp": 4.653, "splay_angle": 35.928, "splay_distance": 5.653, "splay_ratio": 0.314, "d22": 4.340, "d64": 4.642, "eta": -175.698, "theta": -111.257, "eta_prime": -176.268, "theta_prime": -106.693, "eta_base": -174.353, "theta_base": -64.196, "v0": 3.064, "v1": -25.138, "v2": 36.424, "v3": -35.585, "v4": 20.505, "amplitude": 37.534, "phase_angle": 13.970, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.698, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 146.723, 220.532, 267.440 ], "x_axis": [ -0.575, -0.716, 0.395 ], "y_axis": [ -0.668, 0.133, -0.732 ], "z_axis": [ 0.472, -0.685, -0.555 ], "quaternion": [ 0.025, -0.460, 0.752, -0.471 ] } }, { "index": 1281, "index_chain": 1281, "chain_name": "2", "nt_resnum": 1444, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1444", "linked_nts": [ "///2/1443", "///2/1445" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,A-minor", "alpha": -88.752, "beta": -155.717, "gamma": 53.565, "delta": 81.649, "epsilon": -133.156, "zeta": -113.121, "epsilon_zeta": -20.035, "bb_type": "--", "chi": -149.900, "glyco_bond": "anti", "C5prime_xyz": [ -1.473, 8.802, -0.081 ], "P_xyz": [ 0.973, 9.494, 0.582 ], "form": ".", "ssZp": 3.952, "Dp": 4.632, "splay_angle": 27.444, "splay_distance": 4.386, "splay_ratio": 0.240, "d22": 4.971, "d64": 4.814, "eta": 167.740, "theta": -165.110, "eta_prime": -168.210, "theta_prime": -155.922, "eta_base": -108.100, "theta_base": -131.552, "v0": -0.080, "v1": -21.668, "v2": 33.961, "v3": -34.966, "v4": 22.108, "amplitude": 35.865, "phase_angle": 18.753, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.288, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 146.200, 214.971, 266.567 ], "x_axis": [ -0.895, -0.219, -0.389 ], "y_axis": [ 0.148, 0.677, -0.721 ], "z_axis": [ 0.421, -0.703, -0.573 ], "quaternion": [ 0.228, -0.020, 0.887, -0.401 ] } }, { "index": 1282, "index_chain": 1282, "chain_name": "2", "nt_resnum": 1445, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1445", "linked_nts": [ "///2/1444", "///2/1446" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -37.017, "beta": 134.141, "gamma": 55.605, "delta": 81.825, "epsilon": -119.919, "zeta": -82.487, "epsilon_zeta": -37.431, "bb_type": "--", "chi": -150.401, "glyco_bond": "anti", "C5prime_xyz": [ -1.523, 8.785, -0.054 ], "P_xyz": [ 0.970, 8.702, -0.841 ], "form": ".", "ssZp": 3.833, "Dp": 4.668, "splay_angle": 26.023, "splay_distance": 4.234, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": -178.499, "theta": -121.281, "eta_prime": -169.825, "theta_prime": -115.244, "eta_base": -146.277, "theta_base": -83.226, "v0": 0.374, "v1": -22.116, "v2": 34.248, "v3": -34.987, "v4": 21.852, "amplitude": 36.020, "phase_angle": 18.050, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.447, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 148.029, 211.772, 264.189 ], "x_axis": [ -0.776, 0.069, -0.627 ], "y_axis": [ 0.500, 0.674, -0.544 ], "z_axis": [ 0.385, -0.736, -0.557 ], "quaternion": [ 0.292, 0.164, 0.867, -0.369 ] } }, { "index": 1283, "index_chain": 1283, "chain_name": "2", "nt_resnum": 1446, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1446", "linked_nts": [ "///2/1445", "///2/1447" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": -43.944, "beta": 162.776, "gamma": 60.437, "delta": 145.452, "epsilon": -142.270, "zeta": -133.788, "epsilon_zeta": -8.481, "bb_type": "--", "chi": -104.281, "glyco_bond": "anti", "C5prime_xyz": [ -2.383, 8.164, -1.956 ], "P_xyz": [ 0.132, 8.807, -2.308 ], "form": ".", "ssZp": 1.771, "Dp": 1.812, "splay_angle": 24.190, "splay_distance": 4.265, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 177.114, "theta": -113.979, "eta_prime": -140.674, "theta_prime": -162.829, "eta_base": -101.467, "theta_base": -156.991, "v0": -23.102, "v1": 36.408, "v2": -35.094, "v3": 22.682, "v4": 0.064, "amplitude": 37.085, "phase_angle": 161.141, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.506, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 147.242, 211.015, 260.098 ], "x_axis": [ -0.381, 0.801, -0.461 ], "y_axis": [ 0.910, 0.238, -0.339 ], "z_axis": [ -0.162, -0.549, -0.820 ], "quaternion": [ 0.096, 0.548, 0.781, -0.284 ] } }, { "index": 1284, "index_chain": 1284, "chain_name": "2", "nt_resnum": 1447, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1447", "linked_nts": [ "///2/1446", "///2/1448" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 94.107, "beta": -165.858, "gamma": 177.763, "delta": 82.458, "epsilon": -152.878, "zeta": -84.566, "epsilon_zeta": -68.313, "bb_type": "BI", "chi": -157.257, "glyco_bond": "anti", "C5prime_xyz": [ -1.268, 8.759, 0.385 ], "P_xyz": [ -0.011, 10.263, -1.352 ], "form": "A", "ssZp": 4.342, "Dp": 4.588, "splay_angle": 23.270, "splay_distance": 3.653, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 112.744, "theta": 176.112, "eta_prime": 122.314, "theta_prime": -179.147, "eta_base": 148.744, "theta_base": -157.135, "v0": 3.134, "v1": -24.359, "v2": 35.133, "v3": -34.310, "v4": 19.698, "amplitude": 36.174, "phase_angle": 13.778, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.267, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 146.003, 207.291, 258.428 ], "x_axis": [ -0.023, 0.993, -0.112 ], "y_axis": [ 0.992, 0.009, -0.125 ], "z_axis": [ -0.123, -0.114, -0.986 ], "quaternion": [ -0.004, 0.699, 0.710, -0.084 ] } }, { "index": 1285, "index_chain": 1285, "chain_name": "2", "nt_resnum": 1448, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1448", "linked_nts": [ "///2/1447", "///2/1449" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -51.096, "beta": 161.475, "gamma": 53.163, "delta": 83.200, "epsilon": -142.022, "zeta": -101.619, "epsilon_zeta": -40.403, "bb_type": "BI", "chi": -156.873, "glyco_bond": "anti", "C5prime_xyz": [ -1.329, 8.729, 0.377 ], "P_xyz": [ 1.283, 8.965, 0.367 ], "form": ".", "ssZp": 4.265, "Dp": 4.602, "splay_angle": 26.605, "splay_distance": 4.407, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 176.220, "theta": -122.046, "eta_prime": -173.140, "theta_prime": -128.380, "eta_base": -145.582, "theta_base": -102.349, "v0": 1.933, "v1": -22.800, "v2": 33.849, "v3": -33.719, "v4": 20.075, "amplitude": 35.142, "phase_angle": 15.587, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.727, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 144.391, 206.727, 255.199 ], "x_axis": [ 0.409, 0.903, -0.129 ], "y_axis": [ 0.897, -0.424, -0.127 ], "z_axis": [ -0.169, -0.064, -0.983 ], "quaternion": [ -0.019, 0.839, 0.536, -0.089 ] } }, { "index": 1286, "index_chain": 1286, "chain_name": "2", "nt_resnum": 1449, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1449", "linked_nts": [ "///2/1448", "///2/1450" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 134.412, "beta": -125.247, "gamma": -178.068, "delta": 81.201, "epsilon": -112.147, "zeta": -87.694, "epsilon_zeta": -24.453, "bb_type": "--", "chi": -177.533, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.456, 1.543 ], "P_xyz": [ 0.160, 9.784, -0.097 ], "form": "A", "ssZp": 4.705, "Dp": 4.784, "splay_angle": 24.807, "splay_distance": 3.973, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 167.942, "theta": -150.776, "eta_prime": -172.861, "theta_prime": -149.442, "eta_base": -125.592, "theta_base": -117.670, "v0": 4.291, "v1": -26.083, "v2": 36.787, "v3": -35.336, "v4": 19.591, "amplitude": 37.642, "phase_angle": 12.236, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.098, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 144.076, 208.815, 251.331 ], "x_axis": [ 0.830, 0.534, -0.161 ], "y_axis": [ 0.524, -0.845, -0.102 ], "z_axis": [ -0.191, 0.000, -0.982 ], "quaternion": [ -0.027, 0.956, 0.277, -0.092 ] } }, { "index": 1287, "index_chain": 1287, "chain_name": "2", "nt_resnum": 1450, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1450", "linked_nts": [ "///2/1449", "///2/1451" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -61.443, "beta": 163.121, "gamma": 53.093, "delta": 81.053, "epsilon": -153.336, "zeta": -70.543, "epsilon_zeta": -82.793, "bb_type": "BI", "chi": -159.228, "glyco_bond": "anti", "C5prime_xyz": [ -1.618, 8.840, 0.471 ], "P_xyz": [ 0.942, 9.384, 0.543 ], "form": "A", "ssZp": 4.343, "Dp": 4.529, "splay_angle": 24.618, "splay_distance": 3.875, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 157.699, "theta": -144.149, "eta_prime": 176.000, "theta_prime": -144.201, "eta_base": -136.973, "theta_base": -104.352, "v0": -0.769, "v1": -21.594, "v2": 34.415, "v3": -35.809, "v4": 23.072, "amplitude": 36.569, "phase_angle": 19.763, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.314, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 144.655, 210.737, 247.902 ], "x_axis": [ 0.975, -0.161, 0.153 ], "y_axis": [ -0.146, -0.983, -0.109 ], "z_axis": [ 0.168, 0.084, -0.982 ], "quaternion": [ -0.048, 0.993, -0.077, 0.081 ] } }, { "index": 1288, "index_chain": 1288, "chain_name": "2", "nt_resnum": 1451, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1451", "linked_nts": [ "///2/1450", "///2/1452" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate", "alpha": -62.490, "beta": 167.004, "gamma": 55.378, "delta": 81.564, "epsilon": -111.233, "zeta": -67.965, "epsilon_zeta": -43.268, "bb_type": "--", "chi": -163.049, "glyco_bond": "anti", "C5prime_xyz": [ -1.292, 8.715, 0.717 ], "P_xyz": [ 1.318, 8.991, 0.774 ], "form": ".", "ssZp": 4.305, "Dp": 4.751, "splay_angle": 83.606, "splay_distance": 11.964, "splay_ratio": 0.667, "d22": null, "d64": null, "eta": 176.744, "theta": -96.559, "eta_prime": -170.394, "theta_prime": -142.883, "eta_base": -118.169, "theta_base": 158.904, "v0": 3.393, "v1": -25.023, "v2": 35.982, "v3": -35.009, "v4": 19.953, "amplitude": 37.001, "phase_angle": 13.480, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.960, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 146.978, 211.085, 244.820 ], "x_axis": [ 0.628, -0.774, 0.079 ], "y_axis": [ -0.750, -0.629, -0.201 ], "z_axis": [ 0.205, 0.067, -0.976 ], "quaternion": [ -0.075, 0.899, -0.424, 0.079 ] } }, { "index": 1289, "index_chain": 1289, "chain_name": "2", "nt_resnum": 1452, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1452", "linked_nts": [ "///2/1451", "///2/1453" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,phosphate", "alpha": -173.830, "beta": 144.292, "gamma": 62.144, "delta": 147.878, "epsilon": -66.133, "zeta": 88.040, "epsilon_zeta": 205.828, "bb_type": "--", "chi": -117.171, "glyco_bond": "anti", "C5prime_xyz": [ -1.897, 8.448, -1.321 ], "P_xyz": [ 0.723, 8.509, -1.221 ], "form": ".", "ssZp": -0.179, "Dp": 0.216, "splay_angle": 17.457, "splay_distance": 3.691, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 62.375, "theta": 113.377, "eta_prime": 107.666, "theta_prime": 76.211, "eta_base": 68.621, "theta_base": 89.622, "v0": -19.705, "v1": 34.754, "v2": -35.774, "v3": 25.331, "v4": -3.764, "amplitude": 36.711, "phase_angle": 167.027, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.137, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 139.522, 216.785, 237.401 ], "x_axis": [ -0.818, -0.074, 0.570 ], "y_axis": [ 0.248, -0.940, 0.233 ], "z_axis": [ 0.519, 0.332, 0.788 ], "quaternion": [ -0.086, 0.289, 0.150, 0.942 ] } }, { "index": 1290, "index_chain": 1290, "chain_name": "2", "nt_resnum": 1453, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1453", "linked_nts": [ "///2/1452", "///2/1454" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate", "alpha": -163.694, "beta": 169.266, "gamma": 57.755, "delta": 80.297, "epsilon": -146.514, "zeta": -75.374, "epsilon_zeta": -71.140, "bb_type": "BI", "chi": 98.710, "glyco_bond": "--", "C5prime_xyz": [ -4.198, 5.722, 3.078 ], "P_xyz": [ -3.439, 4.123, 5.011 ], "form": ".", "ssZp": 0.195, "Dp": 4.491, "splay_angle": 61.381, "splay_distance": 8.205, "splay_ratio": 0.511, "d22": null, "d64": null, "eta": 122.092, "theta": -144.562, "eta_prime": 115.010, "theta_prime": -152.009, "eta_base": 142.352, "theta_base": -146.196, "v0": -0.667, "v1": -21.692, "v2": 34.496, "v3": -35.908, "v4": 23.029, "amplitude": 36.630, "phase_angle": 19.651, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.407, "filter_rmsd": 0.075, "frame": { "rmsd": 0.016, "origin": [ 140.586, 214.224, 234.966 ], "x_axis": [ -0.780, -0.112, 0.616 ], "y_axis": [ -0.032, -0.976, -0.217 ], "z_axis": [ 0.625, -0.189, 0.757 ], "quaternion": [ -0.021, 0.331, -0.108, 0.937 ] } }, { "index": 1291, "index_chain": 1291, "chain_name": "2", "nt_resnum": 1454, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1454", "linked_nts": [ "///2/1453", "///2/1455" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,BII,non-pair-contact,junction-loop,phosphate", "alpha": -57.312, "beta": 148.547, "gamma": 166.705, "delta": 148.430, "epsilon": -89.934, "zeta": 129.924, "epsilon_zeta": 140.143, "bb_type": "BII", "chi": -58.060, "glyco_bond": "--", "C5prime_xyz": [ -3.379, 6.312, -3.142 ], "P_xyz": [ -3.774, 5.056, -5.416 ], "form": ".", "ssZp": -0.077, "Dp": 0.691, "splay_angle": 46.121, "splay_distance": 7.579, "splay_ratio": 0.397, "d22": null, "d64": null, "eta": -30.000, "theta": 78.065, "eta_prime": -41.196, "theta_prime": 90.659, "eta_base": -80.680, "theta_base": 120.776, "v0": -19.602, "v1": 34.641, "v2": -35.604, "v3": 25.227, "v4": -3.739, "amplitude": 36.539, "phase_angle": 167.010, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 143.085, 219.069, 228.835 ], "x_axis": [ 0.513, 0.567, -0.644 ], "y_axis": [ 0.018, -0.758, -0.652 ], "z_axis": [ -0.858, 0.323, -0.399 ], "quaternion": [ -0.299, 0.817, 0.179, -0.460 ] } }, { "index": 1292, "index_chain": 1292, "chain_name": "2", "nt_resnum": 1455, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1455", "linked_nts": [ "///2/1454", "///2/1456" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -179.166, "beta": -167.193, "gamma": 53.212, "delta": 80.161, "epsilon": -138.902, "zeta": -78.382, "epsilon_zeta": -60.520, "bb_type": "BI", "chi": 164.180, "glyco_bond": "--", "C5prime_xyz": [ -1.829, 7.992, 2.427 ], "P_xyz": [ 0.219, 7.895, 4.061 ], "form": "A", "ssZp": 4.499, "Dp": 4.685, "splay_angle": 26.789, "splay_distance": 4.118, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 127.185, "theta": -143.871, "eta_prime": 111.885, "theta_prime": -135.632, "eta_base": 150.096, "theta_base": -110.140, "v0": 2.121, "v1": -24.401, "v2": 36.140, "v3": -35.899, "v4": 21.300, "amplitude": 37.489, "phase_angle": 15.419, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.129, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 136.648, 216.134, 231.553 ], "x_axis": [ 0.854, 0.508, -0.113 ], "y_axis": [ 0.506, -0.861, -0.050 ], "z_axis": [ -0.122, -0.015, -0.992 ], "quaternion": [ -0.009, 0.963, 0.263, -0.061 ] } }, { "index": 1293, "index_chain": 1293, "chain_name": "2", "nt_resnum": 1456, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1456", "linked_nts": [ "///2/1455", "///2/1457" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate", "alpha": -90.186, "beta": -163.792, "gamma": 63.796, "delta": 83.576, "epsilon": -159.802, "zeta": -72.690, "epsilon_zeta": -87.112, "bb_type": "BI", "chi": -166.688, "glyco_bond": "anti", "C5prime_xyz": [ -1.339, 8.674, 0.948 ], "P_xyz": [ 1.171, 8.902, 1.686 ], "form": "A", "ssZp": 4.446, "Dp": 4.512, "splay_angle": 23.340, "splay_distance": 3.630, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 165.719, "theta": -150.824, "eta_prime": 175.788, "theta_prime": -149.777, "eta_base": -150.860, "theta_base": -130.020, "v0": 2.999, "v1": -23.904, "v2": 34.500, "v3": -33.722, "v4": 19.415, "amplitude": 35.537, "phase_angle": 13.879, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.382, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 135.149, 218.470, 228.511 ], "x_axis": [ 0.990, -0.142, 0.000 ], "y_axis": [ -0.141, -0.988, 0.055 ], "z_axis": [ -0.008, -0.054, -0.998 ], "quaternion": [ 0.027, 0.997, -0.071, -0.002 ] } }, { "index": 1294, "index_chain": 1294, "chain_name": "2", "nt_resnum": 1457, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1457", "linked_nts": [ "///2/1456", "///2/1458" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -66.818, "beta": -178.391, "gamma": 51.640, "delta": 82.682, "epsilon": -127.037, "zeta": -89.658, "epsilon_zeta": -37.379, "bb_type": "--", "chi": -160.478, "glyco_bond": "anti", "C5prime_xyz": [ -1.146, 8.675, 0.589 ], "P_xyz": [ 1.419, 8.918, 1.111 ], "form": "A", "ssZp": 4.321, "Dp": 4.707, "splay_angle": 24.178, "splay_distance": 3.839, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 177.090, "theta": -141.479, "eta_prime": -176.035, "theta_prime": -137.638, "eta_base": -148.583, "theta_base": -107.668, "v0": 3.801, "v1": -24.795, "v2": 35.267, "v3": -34.018, "v4": 19.064, "amplitude": 36.153, "phase_angle": 12.713, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.888, "filter_rmsd": 0.107, "frame": { "rmsd": 0.006, "origin": [ 135.108, 220.002, 225.220 ], "x_axis": [ 0.782, -0.621, 0.062 ], "y_axis": [ -0.623, -0.782, 0.027 ], "z_axis": [ 0.032, -0.060, -0.998 ], "quaternion": [ 0.023, 0.944, -0.330, 0.025 ] } }, { "index": 1295, "index_chain": 1295, "chain_name": "2", "nt_resnum": 1458, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1458", "linked_nts": [ "///2/1457", "///2/1459" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -52.529, "beta": 153.553, "gamma": 48.274, "delta": 80.648, "epsilon": -148.539, "zeta": -78.104, "epsilon_zeta": -70.435, "bb_type": "BI", "chi": -170.686, "glyco_bond": "anti", "C5prime_xyz": [ -1.543, 8.667, 1.151 ], "P_xyz": [ 1.045, 8.941, 1.440 ], "form": "A", "ssZp": 4.575, "Dp": 4.610, "splay_angle": 23.646, "splay_distance": 3.716, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 159.599, "theta": -146.179, "eta_prime": 175.548, "theta_prime": -147.475, "eta_base": -139.725, "theta_base": -124.152, "v0": 1.133, "v1": -23.343, "v2": 35.450, "v3": -35.805, "v4": 21.857, "amplitude": 37.053, "phase_angle": 16.918, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.504, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 136.537, 219.411, 221.706 ], "x_axis": [ 0.259, -0.849, 0.460 ], "y_axis": [ -0.957, -0.289, 0.006 ], "z_axis": [ 0.128, -0.442, -0.888 ], "quaternion": [ 0.143, 0.781, -0.579, 0.188 ] } }, { "index": 1296, "index_chain": 1296, "chain_name": "2", "nt_resnum": 1459, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1459", "linked_nts": [ "///2/1458", "///2/1460" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -57.133, "beta": 168.070, "gamma": 49.668, "delta": 79.847, "epsilon": -146.604, "zeta": -77.686, "epsilon_zeta": -68.918, "bb_type": "BI", "chi": -172.751, "glyco_bond": "anti", "C5prime_xyz": [ -1.528, 8.618, 1.264 ], "P_xyz": [ 1.003, 9.005, 1.814 ], "form": "A", "ssZp": 4.635, "Dp": 4.657, "splay_angle": 25.637, "splay_distance": 4.005, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 168.274, "theta": -147.976, "eta_prime": -179.864, "theta_prime": -146.044, "eta_base": -139.694, "theta_base": -120.133, "v0": 1.989, "v1": -24.459, "v2": 36.411, "v3": -36.283, "v4": 21.613, "amplitude": 37.817, "phase_angle": 15.676, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.904, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 138.692, 218.076, 218.990 ], "x_axis": [ -0.293, -0.834, 0.468 ], "y_axis": [ -0.954, 0.225, -0.197 ], "z_axis": [ 0.059, -0.504, -0.862 ], "quaternion": [ -0.133, -0.580, 0.771, -0.227 ] } }, { "index": 1297, "index_chain": 1297, "chain_name": "2", "nt_resnum": 1460, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1460", "linked_nts": [ "///2/1459", "///2/1461" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -56.161, "beta": 173.865, "gamma": 47.766, "delta": 80.207, "epsilon": -138.688, "zeta": -68.405, "epsilon_zeta": -70.283, "bb_type": "BI", "chi": -170.636, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.651, 1.154 ], "P_xyz": [ 1.171, 8.976, 1.824 ], "form": "A", "ssZp": 4.633, "Dp": 4.696, "splay_angle": 24.498, "splay_distance": 3.836, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 172.674, "theta": -134.246, "eta_prime": -177.586, "theta_prime": -131.256, "eta_base": -139.904, "theta_base": -86.490, "v0": 2.310, "v1": -24.674, "v2": 36.425, "v3": -36.098, "v4": 21.292, "amplitude": 37.741, "phase_angle": 15.175, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.876, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 140.415, 215.334, 216.633 ], "x_axis": [ -0.777, -0.495, 0.388 ], "y_axis": [ -0.624, 0.685, -0.375 ], "z_axis": [ -0.080, -0.534, -0.842 ], "quaternion": [ -0.129, -0.308, 0.909, -0.250 ] } }, { "index": 1298, "index_chain": 1298, "chain_name": "2", "nt_resnum": 1461, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1461", "linked_nts": [ "///2/1460", "///2/1462" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart", "alpha": -64.811, "beta": 169.162, "gamma": 51.418, "delta": 79.993, "epsilon": -129.417, "zeta": -85.920, "epsilon_zeta": -43.497, "bb_type": "BI", "chi": -171.351, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.622, 1.168 ], "P_xyz": [ 1.119, 8.994, 1.577 ], "form": ".", "ssZp": 4.652, "Dp": 4.755, "splay_angle": 105.565, "splay_distance": 14.480, "splay_ratio": 0.797, "d22": null, "d64": null, "eta": 163.092, "theta": -97.272, "eta_prime": -179.400, "theta_prime": -149.217, "eta_base": -117.062, "theta_base": 173.786, "v0": 2.940, "v1": -25.350, "v2": 36.884, "v3": -36.217, "v4": 20.988, "amplitude": 38.062, "phase_angle": 14.290, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.936, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 138.587, 212.267, 215.227 ], "x_axis": [ -0.957, 0.244, 0.157 ], "y_axis": [ 0.114, 0.814, -0.570 ], "z_axis": [ -0.266, -0.527, -0.807 ], "quaternion": [ -0.112, 0.094, 0.946, -0.290 ] } }, { "index": 1299, "index_chain": 1299, "chain_name": "2", "nt_resnum": 1462, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1462", "linked_nts": [ "///2/1461", "///2/1463" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 126.193, "beta": 111.267, "gamma": 132.433, "delta": 147.638, "epsilon": -156.794, "zeta": 22.553, "epsilon_zeta": 180.653, "bb_type": "--", "chi": -135.735, "glyco_bond": "anti", "C5prime_xyz": [ -1.862, 8.690, -0.364 ], "P_xyz": [ -0.245, 9.067, -2.402 ], "form": ".", "ssZp": 1.822, "Dp": 1.959, "splay_angle": 97.203, "splay_distance": 13.397, "splay_ratio": 0.751, "d22": 8.557, "d64": 9.796, "eta": 50.631, "theta": -66.246, "eta_prime": 84.372, "theta_prime": -47.588, "eta_base": 61.089, "theta_base": -8.733, "v0": -21.180, "v1": 35.817, "v2": -35.958, "v3": 24.656, "v4": -2.390, "amplitude": 37.252, "phase_angle": 164.856, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 146.477, 207.906, 203.896 ], "x_axis": [ 0.807, 0.441, 0.393 ], "y_axis": [ -0.591, 0.583, 0.558 ], "z_axis": [ 0.017, -0.682, 0.731 ], "quaternion": [ 0.883, 0.351, -0.107, 0.292 ] } }, { "index": 1300, "index_chain": 1300, "chain_name": "2", "nt_resnum": 1463, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1463", "linked_nts": [ "///2/1462", "///2/1464" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -107.782, "beta": 154.034, "gamma": 89.505, "delta": 148.285, "epsilon": -99.766, "zeta": 107.847, "epsilon_zeta": 152.387, "bb_type": "--", "chi": -102.531, "glyco_bond": "anti", "C5prime_xyz": [ -2.191, 8.079, -2.013 ], "P_xyz": [ 0.189, 7.866, -3.112 ], "form": ".", "ssZp": 0.757, "Dp": 0.957, "splay_angle": 55.201, "splay_distance": 9.774, "splay_ratio": 0.464, "d22": 7.066, "d64": 8.090, "eta": -179.217, "theta": 130.107, "eta_prime": -111.904, "theta_prime": 83.716, "eta_base": -102.491, "theta_base": 77.041, "v0": -20.024, "v1": 34.747, "v2": -35.407, "v3": 24.735, "v4": -3.150, "amplitude": 36.469, "phase_angle": 166.140, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 137.520, 215.948, 209.777 ], "x_axis": [ -0.594, 0.268, -0.759 ], "y_axis": [ -0.282, -0.952, -0.115 ], "z_axis": [ -0.754, 0.145, 0.641 ], "quaternion": [ 0.154, -0.424, 0.008, 0.893 ] } }, { "index": 1301, "index_chain": 1301, "chain_name": "2", "nt_resnum": 1464, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1464", "linked_nts": [ "///2/1463", "///2/1465" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,ribose-zipper", "alpha": 56.625, "beta": -172.958, "gamma": -169.971, "delta": 82.108, "epsilon": -119.177, "zeta": -112.592, "epsilon_zeta": -6.585, "bb_type": "--", "chi": -158.228, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.840, 0.404 ], "P_xyz": [ -0.610, 10.761, -1.159 ], "form": ".", "ssZp": 4.135, "Dp": 4.638, "splay_angle": 29.875, "splay_distance": 4.746, "splay_ratio": 0.265, "d22": null, "d64": null, "eta": 133.732, "theta": 170.081, "eta_prime": 113.787, "theta_prime": -174.202, "eta_base": 111.319, "theta_base": -128.040, "v0": -0.592, "v1": -21.333, "v2": 33.856, "v3": -35.139, "v4": 22.548, "amplitude": 35.921, "phase_angle": 19.523, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.478, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 146.270, 211.673, 208.949 ], "x_axis": [ -0.558, 0.795, -0.239 ], "y_axis": [ -0.768, -0.385, 0.512 ], "z_axis": [ 0.315, 0.469, 0.825 ], "quaternion": [ 0.469, 0.023, 0.295, 0.832 ] } }, { "index": 1302, "index_chain": 1302, "chain_name": "2", "nt_resnum": 1465, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1465", "linked_nts": [ "///2/1464", "///2/1466" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate", "alpha": -40.418, "beta": 129.046, "gamma": 58.701, "delta": 84.643, "epsilon": -93.641, "zeta": -36.039, "epsilon_zeta": -57.601, "bb_type": "--", "chi": -155.706, "glyco_bond": "anti", "C5prime_xyz": [ -1.201, 8.658, 0.286 ], "P_xyz": [ 1.222, 8.255, -0.631 ], "form": ".", "ssZp": 3.781, "Dp": 4.698, "splay_angle": 39.246, "splay_distance": 6.737, "splay_ratio": 0.337, "d22": null, "d64": null, "eta": -174.660, "theta": -75.210, "eta_prime": -162.506, "theta_prime": -83.752, "eta_base": -120.476, "theta_base": -56.626, "v0": 4.371, "v1": -24.801, "v2": 34.659, "v3": -33.099, "v4": 18.176, "amplitude": 35.395, "phase_angle": 11.707, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.563, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 146.086, 214.584, 212.694 ], "x_axis": [ -0.921, 0.369, 0.126 ], "y_axis": [ -0.230, -0.777, 0.586 ], "z_axis": [ 0.314, 0.511, 0.800 ], "quaternion": [ 0.160, 0.118, 0.293, 0.935 ] } }, { "index": 1303, "index_chain": 1303, "chain_name": "2", "nt_resnum": 1466, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1466", "linked_nts": [ "///2/1465", "///2/1467" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate", "alpha": -109.346, "beta": 113.772, "gamma": 140.253, "delta": 82.474, "epsilon": -142.513, "zeta": -79.751, "epsilon_zeta": -62.762, "bb_type": "BI", "chi": -174.810, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.539, 1.396 ], "P_xyz": [ -0.593, 10.286, -0.376 ], "form": "A", "ssZp": 4.621, "Dp": 4.652, "splay_angle": 22.156, "splay_distance": 3.490, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 164.219, "theta": 176.226, "eta_prime": -164.161, "theta_prime": -175.858, "eta_base": -102.989, "theta_base": -146.904, "v0": 2.982, "v1": -24.168, "v2": 34.943, "v3": -34.223, "v4": 19.742, "amplitude": 36.012, "phase_angle": 14.001, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 140.489, 215.459, 216.338 ], "x_axis": [ -0.770, -0.612, 0.182 ], "y_axis": [ 0.619, -0.647, 0.445 ], "z_axis": [ -0.155, 0.455, 0.877 ], "quaternion": [ -0.339, 0.008, 0.248, 0.907 ] } }, { "index": 1304, "index_chain": 1304, "chain_name": "2", "nt_resnum": 1467, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1467", "linked_nts": [ "///2/1466", "///2/1468" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -61.532, "beta": 169.111, "gamma": 55.269, "delta": 82.531, "epsilon": -151.754, "zeta": -74.652, "epsilon_zeta": -77.102, "bb_type": "BI", "chi": -162.501, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.772, 0.676 ], "P_xyz": [ 1.241, 9.117, 0.926 ], "form": "A", "ssZp": 4.404, "Dp": 4.547, "splay_angle": 23.302, "splay_distance": 3.687, "splay_ratio": 0.202, "d22": 4.534, "d64": 4.440, "eta": 169.358, "theta": -146.843, "eta_prime": -176.832, "theta_prime": -146.704, "eta_base": -138.795, "theta_base": -121.020, "v0": 0.992, "v1": -22.432, "v2": 34.099, "v3": -34.490, "v4": 21.140, "amplitude": 35.668, "phase_angle": 17.061, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 138.597, 217.634, 218.305 ], "x_axis": [ -0.293, -0.876, 0.383 ], "y_axis": [ 0.927, -0.163, 0.337 ], "z_axis": [ -0.233, 0.454, 0.860 ], "quaternion": [ 0.592, -0.049, -0.260, -0.761 ] } }, { "index": 1305, "index_chain": 1305, "chain_name": "2", "nt_resnum": 1468, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1468", "linked_nts": [ "///2/1467", "///2/1469" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -65.284, "beta": 172.323, "gamma": 55.063, "delta": 81.496, "epsilon": -125.480, "zeta": -93.746, "epsilon_zeta": -31.734, "bb_type": "--", "chi": -158.089, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.767, 0.417 ], "P_xyz": [ 1.339, 9.102, 0.462 ], "form": "A", "ssZp": 4.260, "Dp": 4.730, "splay_angle": 22.520, "splay_distance": 3.579, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 173.799, "theta": -147.880, "eta_prime": -175.847, "theta_prime": -145.239, "eta_base": -139.320, "theta_base": -126.289, "v0": 2.704, "v1": -24.456, "v2": 35.683, "v3": -35.118, "v4": 20.449, "amplitude": 36.858, "phase_angle": 14.503, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.981, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 136.554, 218.889, 221.106 ], "x_axis": [ 0.263, -0.836, 0.482 ], "y_axis": [ 0.923, 0.363, 0.125 ], "z_axis": [ -0.280, 0.412, 0.867 ], "quaternion": [ 0.790, -0.091, -0.241, -0.557 ] } }, { "index": 1306, "index_chain": 1306, "chain_name": "2", "nt_resnum": 1469, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1469", "linked_nts": [ "///2/1468", "///2/1470" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -69.325, "beta": 157.518, "gamma": 58.951, "delta": 81.547, "epsilon": -151.509, "zeta": -71.498, "epsilon_zeta": -80.011, "bb_type": "BI", "chi": -158.011, "glyco_bond": "anti", "C5prime_xyz": [ -1.260, 8.712, 0.406 ], "P_xyz": [ 1.321, 8.915, -0.010 ], "form": "A", "ssZp": 4.387, "Dp": 4.628, "splay_angle": 24.918, "splay_distance": 3.912, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 157.703, "theta": -142.031, "eta_prime": 170.126, "theta_prime": -143.378, "eta_base": -158.864, "theta_base": -114.667, "v0": 3.149, "v1": -24.968, "v2": 36.073, "v3": -35.230, "v4": 20.253, "amplitude": 37.153, "phase_angle": 13.847, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.474, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 135.134, 219.679, 224.295 ], "x_axis": [ 0.742, -0.660, 0.115 ], "y_axis": [ 0.663, 0.749, 0.024 ], "z_axis": [ -0.102, 0.058, 0.993 ], "quaternion": [ 0.933, -0.009, -0.058, -0.354 ] } }, { "index": 1307, "index_chain": 1307, "chain_name": "2", "nt_resnum": 1470, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1470", "linked_nts": [ "///2/1469", "///2/1471" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate", "alpha": -61.440, "beta": 165.249, "gamma": 62.103, "delta": 81.420, "epsilon": -144.837, "zeta": -82.482, "epsilon_zeta": -62.355, "bb_type": "BI", "chi": -157.752, "glyco_bond": "anti", "C5prime_xyz": [ -1.297, 8.783, 0.402 ], "P_xyz": [ 1.294, 9.081, 0.106 ], "form": ".", "ssZp": 4.349, "Dp": 4.642, "splay_angle": 28.429, "splay_distance": 4.543, "splay_ratio": 0.246, "d22": 4.625, "d64": 4.541, "eta": 173.812, "theta": -150.289, "eta_prime": -169.059, "theta_prime": -150.817, "eta_base": -123.098, "theta_base": -137.821, "v0": 2.222, "v1": -24.064, "v2": 35.560, "v3": -35.277, "v4": 20.852, "amplitude": 36.859, "phase_angle": 15.252, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.845, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 135.383, 218.265, 227.934 ], "x_axis": [ 0.985, -0.103, 0.135 ], "y_axis": [ 0.099, 0.994, 0.034 ], "z_axis": [ -0.138, -0.020, 0.990 ], "quaternion": [ 0.996, 0.014, -0.068, -0.051 ] } }, { "index": 1308, "index_chain": 1308, "chain_name": "2", "nt_resnum": 1471, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1471", "linked_nts": [ "///2/1470", "///2/1472" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -61.770, "beta": -176.982, "gamma": 39.997, "delta": 81.625, "epsilon": -145.126, "zeta": -79.997, "epsilon_zeta": -65.129, "bb_type": "BI", "chi": -165.808, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.709, 0.884 ], "P_xyz": [ 1.081, 9.122, 1.895 ], "form": "A", "ssZp": 4.505, "Dp": 4.626, "splay_angle": 22.845, "splay_distance": 3.607, "splay_ratio": 0.199, "d22": 4.262, "d64": 4.347, "eta": 167.128, "theta": -149.640, "eta_prime": 171.743, "theta_prime": -144.114, "eta_base": -165.865, "theta_base": -113.522, "v0": 1.985, "v1": -23.641, "v2": 35.101, "v3": -34.949, "v4": 20.789, "amplitude": 36.439, "phase_angle": 15.575, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.638, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 134.682, 216.723, 232.149 ], "x_axis": [ 0.857, 0.279, -0.434 ], "y_axis": [ -0.368, 0.920, -0.134 ], "z_axis": [ 0.362, 0.275, 0.891 ], "quaternion": [ 0.958, -0.107, 0.208, 0.169 ] } }, { "index": 1309, "index_chain": 1309, "chain_name": "2", "nt_resnum": 1472, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1472", "linked_nts": [ "///2/1471", "///2/1473" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop", "alpha": -53.613, "beta": 161.009, "gamma": 55.190, "delta": 81.869, "epsilon": -160.438, "zeta": -72.325, "epsilon_zeta": -88.113, "bb_type": "BI", "chi": -163.655, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.782, 0.742 ], "P_xyz": [ 1.179, 9.108, 0.879 ], "form": ".", "ssZp": 4.383, "Dp": 4.473, "splay_angle": 34.018, "splay_distance": 5.164, "splay_ratio": 0.293, "d22": null, "d64": null, "eta": 169.704, "theta": -112.006, "eta_prime": -173.096, "theta_prime": -117.771, "eta_base": -130.008, "theta_base": -58.878, "v0": 0.143, "v1": -21.775, "v2": 33.868, "v3": -34.740, "v4": 21.846, "amplitude": 35.692, "phase_angle": 18.397, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.815, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 136.994, 216.716, 234.918 ], "x_axis": [ 0.512, 0.721, -0.467 ], "y_axis": [ -0.755, 0.637, 0.155 ], "z_axis": [ 0.409, 0.273, 0.871 ], "quaternion": [ 0.869, -0.034, 0.252, 0.425 ] } }, { "index": 1310, "index_chain": 1310, "chain_name": "2", "nt_resnum": 1473, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1473", "linked_nts": [ "///2/1472", "///2/1474" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 174.467, "beta": -133.655, "gamma": 128.628, "delta": 80.375, "epsilon": -110.649, "zeta": -60.632, "epsilon_zeta": -50.016, "bb_type": "--", "chi": -176.060, "glyco_bond": "anti", "C5prime_xyz": [ -1.246, 8.487, 1.440 ], "P_xyz": [ 1.239, 8.582, 0.620 ], "form": ".", "ssZp": 4.710, "Dp": 4.823, "splay_angle": 101.746, "splay_distance": 13.173, "splay_ratio": 0.776, "d22": null, "d64": null, "eta": 149.294, "theta": -96.488, "eta_prime": 177.947, "theta_prime": -151.467, "eta_base": -97.636, "theta_base": 147.813, "v0": 4.757, "v1": -26.749, "v2": 37.384, "v3": -35.641, "v4": 19.507, "amplitude": 38.165, "phase_angle": 11.611, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 138.367, 221.564, 236.051 ], "x_axis": [ -0.539, 0.824, -0.175 ], "y_axis": [ -0.725, -0.347, 0.595 ], "z_axis": [ 0.430, 0.448, 0.784 ], "quaternion": [ 0.474, 0.078, 0.319, 0.817 ] } }, { "index": 1311, "index_chain": 1311, "chain_name": "2", "nt_resnum": 1474, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1474", "linked_nts": [ "///2/1473", "///2/1475" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,splayed-apart", "alpha": -165.516, "beta": 130.538, "gamma": 27.833, "delta": 87.356, "epsilon": -161.410, "zeta": -77.313, "epsilon_zeta": -84.097, "bb_type": "BI", "chi": -122.464, "glyco_bond": "anti", "C5prime_xyz": [ -1.255, 8.320, -1.505 ], "P_xyz": [ 1.331, 7.837, -1.571 ], "form": ".", "ssZp": 2.906, "Dp": 4.440, "splay_angle": 33.249, "splay_distance": 5.822, "splay_ratio": 0.373, "d22": null, "d64": null, "eta": 1.181, "theta": -142.844, "eta_prime": 40.867, "theta_prime": -153.474, "eta_base": 22.230, "theta_base": -87.317, "v0": 6.527, "v1": -24.746, "v2": 32.570, "v3": -29.699, "v4": 14.689, "amplitude": 32.848, "phase_angle": 7.454, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.038, "filter_rmsd": 0.038, "frame": { "rmsd": 0.008, "origin": [ 143.086, 214.191, 245.895 ], "x_axis": [ -0.711, -0.693, -0.119 ], "y_axis": [ -0.621, 0.698, -0.358 ], "z_axis": [ 0.331, -0.180, -0.926 ], "quaternion": [ 0.123, -0.360, 0.913, -0.147 ] } }, { "index": 1312, "index_chain": 1312, "chain_name": "2", "nt_resnum": 1475, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1475", "linked_nts": [ "///2/1474", "///2/1476" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,syn,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-donor,phosphate", "alpha": -63.089, "beta": 160.837, "gamma": 50.564, "delta": 80.853, "epsilon": -94.471, "zeta": -102.997, "epsilon_zeta": 8.526, "bb_type": "--", "chi": 51.507, "glyco_bond": "syn", "C5prime_xyz": [ -5.457, 3.941, 1.272 ], "P_xyz": [ -5.221, 1.490, 2.182 ], "form": ".", "ssZp": -2.166, "Dp": 4.495, "splay_angle": 50.142, "splay_distance": 6.857, "splay_ratio": 0.424, "d22": null, "d64": null, "eta": 175.039, "theta": -131.735, "eta_prime": 179.036, "theta_prime": -110.989, "eta_base": -107.047, "theta_base": -113.564, "v0": -3.092, "v1": -19.332, "v2": 33.015, "v3": -35.732, "v4": 24.524, "amplitude": 35.980, "phase_angle": 23.421, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.782, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 140.292, 215.704, 241.017 ], "x_axis": [ 0.165, -0.818, 0.552 ], "y_axis": [ 0.913, 0.338, 0.228 ], "z_axis": [ -0.373, 0.466, 0.802 ], "quaternion": [ 0.759, -0.078, -0.304, -0.570 ] } }, { "index": 1313, "index_chain": 1313, "chain_name": "2", "nt_resnum": 1476, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1476", "linked_nts": [ "///2/1475", "///2/1477" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart", "alpha": -54.622, "beta": -158.436, "gamma": 84.834, "delta": 149.237, "epsilon": -68.223, "zeta": -39.338, "epsilon_zeta": -28.885, "bb_type": "--", "chi": -72.208, "glyco_bond": "--", "C5prime_xyz": [ -2.896, 6.973, -2.966 ], "P_xyz": [ -0.454, 7.250, -3.903 ], "form": ".", "ssZp": -0.173, "Dp": 0.246, "splay_angle": 170.582, "splay_distance": 19.135, "splay_ratio": 0.997, "d22": null, "d64": null, "eta": -108.784, "theta": 56.735, "eta_prime": -96.095, "theta_prime": 3.900, "eta_base": -135.992, "theta_base": -136.453, "v0": -19.332, "v1": 34.659, "v2": -35.943, "v3": 25.707, "v4": -4.208, "amplitude": 36.784, "phase_angle": 167.721, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 138.499, 215.103, 234.426 ], "x_axis": [ -0.817, 0.452, 0.359 ], "y_axis": [ 0.412, 0.892, -0.187 ], "z_axis": [ -0.405, -0.005, -0.914 ], "quaternion": [ -0.201, 0.227, 0.952, -0.050 ] } }, { "index": 1314, "index_chain": 1314, "chain_name": "2", "nt_resnum": 1477, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1477", "linked_nts": [ "///2/1476", "///2/1478" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,junction-loop,splayed-apart", "alpha": 111.692, "beta": 74.426, "gamma": 150.642, "delta": 144.863, "epsilon": -93.724, "zeta": -102.697, "epsilon_zeta": 8.973, "bb_type": "--", "chi": -122.116, "glyco_bond": "anti", "C5prime_xyz": [ -2.066, 8.573, -1.132 ], "P_xyz": [ -1.730, 8.247, -3.728 ], "form": ".", "ssZp": 0.794, "Dp": 0.820, "splay_angle": 136.097, "splay_distance": 18.023, "splay_ratio": 0.928, "d22": 11.909, "d64": 15.199, "eta": 54.843, "theta": -146.775, "eta_prime": 53.476, "theta_prime": -147.389, "eta_base": -164.028, "theta_base": 165.696, "v0": -22.998, "v1": 36.387, "v2": -35.136, "v3": 22.775, "v4": -0.075, "amplitude": 37.087, "phase_angle": 161.332, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 153.683, 223.517, 226.377 ], "x_axis": [ -0.476, 0.761, -0.440 ], "y_axis": [ -0.703, -0.030, 0.710 ], "z_axis": [ 0.528, 0.648, 0.550 ], "quaternion": [ 0.511, 0.031, 0.473, 0.717 ] } }, { "index": 1315, "index_chain": 1315, "chain_name": "2", "nt_resnum": 1478, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1478", "linked_nts": [ "///2/1477", "///2/1479" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": 57.973, "beta": 171.145, "gamma": 51.696, "delta": 79.880, "epsilon": -156.574, "zeta": -75.384, "epsilon_zeta": -81.190, "bb_type": "BI", "chi": -165.488, "glyco_bond": "anti", "C5prime_xyz": [ -1.465, 8.697, 0.845 ], "P_xyz": [ 1.092, 9.184, 1.188 ], "form": "A", "ssZp": 4.522, "Dp": 4.586, "splay_angle": 21.522, "splay_distance": 3.378, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": -95.668, "theta": -154.239, "eta_prime": -42.213, "theta_prime": -154.925, "eta_base": 25.273, "theta_base": -134.366, "v0": 1.947, "v1": -24.542, "v2": 36.554, "v3": -36.421, "v4": 21.732, "amplitude": 37.974, "phase_angle": 15.719, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.702, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 155.986, 215.859, 242.529 ], "x_axis": [ -0.354, -0.878, -0.323 ], "y_axis": [ -0.565, 0.475, -0.674 ], "z_axis": [ 0.745, -0.056, -0.664 ], "quaternion": [ 0.338, -0.457, 0.790, -0.231 ] } }, { "index": 1316, "index_chain": 1316, "chain_name": "2", "nt_resnum": 1479, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1479", "linked_nts": [ "///2/1478", "///2/1480" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": -64.480, "beta": 167.533, "gamma": 57.618, "delta": 79.910, "epsilon": -149.240, "zeta": -52.546, "epsilon_zeta": -96.695, "bb_type": "BI", "chi": -170.682, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.652, 1.135 ], "P_xyz": [ 1.190, 9.027, 1.339 ], "form": "A", "ssZp": 4.627, "Dp": 4.658, "splay_angle": 24.478, "splay_distance": 4.059, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 168.111, "theta": -130.534, "eta_prime": 179.469, "theta_prime": -137.054, "eta_base": -145.177, "theta_base": -113.724, "v0": 2.599, "v1": -24.998, "v2": 36.675, "v3": -36.150, "v4": 21.172, "amplitude": 37.926, "phase_angle": 14.754, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 159.115, 214.817, 241.794 ], "x_axis": [ -0.597, -0.545, -0.589 ], "y_axis": [ -0.302, 0.833, -0.464 ], "z_axis": [ 0.743, -0.100, -0.662 ], "quaternion": [ 0.379, -0.241, 0.879, -0.160 ] } }, { "index": 1317, "index_chain": 1317, "chain_name": "2", "nt_resnum": 1480, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1480", "linked_nts": [ "///2/1479", "///2/1481" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -128.755, "beta": 148.743, "gamma": 128.613, "delta": 83.612, "epsilon": -130.702, "zeta": -81.352, "epsilon_zeta": -49.350, "bb_type": "BI", "chi": 168.713, "glyco_bond": "anti", "C5prime_xyz": [ -1.520, 8.024, 2.259 ], "P_xyz": [ 0.466, 9.624, 1.634 ], "form": "A", "ssZp": 4.635, "Dp": 4.715, "splay_angle": 24.724, "splay_distance": 3.765, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 169.545, "theta": -158.775, "eta_prime": -173.798, "theta_prime": -155.295, "eta_base": -126.786, "theta_base": -124.557, "v0": 4.568, "v1": -25.183, "v2": 35.081, "v3": -33.413, "v4": 18.228, "amplitude": 35.795, "phase_angle": 11.461, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 161.219, 212.070, 239.673 ], "x_axis": [ -0.701, -0.023, -0.713 ], "y_axis": [ 0.039, 0.997, -0.071 ], "z_axis": [ 0.712, -0.078, -0.698 ], "quaternion": [ 0.387, 0.004, 0.921, -0.040 ] } }, { "index": 1318, "index_chain": 1318, "chain_name": "2", "nt_resnum": 1481, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1481", "linked_nts": [ "///2/1480", "///2/1482" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": -70.117, "beta": 176.689, "gamma": 55.949, "delta": 84.783, "epsilon": -141.033, "zeta": -71.202, "epsilon_zeta": -69.831, "bb_type": "BI", "chi": -169.019, "glyco_bond": "anti", "C5prime_xyz": [ -1.196, 8.611, 1.111 ], "P_xyz": [ 1.356, 8.717, 1.724 ], "form": "A", "ssZp": 4.515, "Dp": 4.614, "splay_angle": 23.207, "splay_distance": 3.638, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 168.027, "theta": -133.905, "eta_prime": -178.990, "theta_prime": -131.901, "eta_base": -137.873, "theta_base": -92.190, "v0": 3.588, "v1": -23.761, "v2": 33.731, "v3": -32.613, "v4": 18.330, "amplitude": 34.591, "phase_angle": 12.804, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.765, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 162.991, 209.924, 237.138 ], "x_axis": [ -0.553, 0.641, -0.532 ], "y_axis": [ 0.476, 0.767, 0.430 ], "z_axis": [ 0.684, -0.015, -0.729 ], "quaternion": [ 0.348, 0.320, 0.873, 0.119 ] } }, { "index": 1319, "index_chain": 1319, "chain_name": "2", "nt_resnum": 1482, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1482", "linked_nts": [ "///2/1481", "///2/1483" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -65.693, "beta": 168.374, "gamma": 54.902, "delta": 84.042, "epsilon": -109.987, "zeta": -84.867, "epsilon_zeta": -25.120, "bb_type": "--", "chi": -162.932, "glyco_bond": "anti", "C5prime_xyz": [ -1.264, 8.727, 0.720 ], "P_xyz": [ 1.339, 8.949, 0.976 ], "form": ".", "ssZp": 4.226, "Dp": 4.666, "splay_angle": 44.006, "splay_distance": 6.816, "splay_ratio": 0.378, "d22": null, "d64": null, "eta": 173.540, "theta": -117.677, "eta_prime": -170.934, "theta_prime": -107.175, "eta_base": -117.983, "theta_base": -61.936, "v0": 2.251, "v1": -23.103, "v2": 33.968, "v3": -33.603, "v4": 19.811, "amplitude": 35.170, "phase_angle": 15.025, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.931, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 164.015, 210.588, 233.711 ], "x_axis": [ -0.141, 0.990, -0.024 ], "y_axis": [ 0.761, 0.124, 0.637 ], "z_axis": [ 0.634, 0.072, -0.770 ], "quaternion": [ 0.230, 0.613, 0.713, 0.248 ] } }, { "index": 1320, "index_chain": 1320, "chain_name": "2", "nt_resnum": 1483, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1483", "linked_nts": [ "///2/1482", "///2/1484" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,junction-loop,splayed-apart", "alpha": -43.459, "beta": 135.487, "gamma": 66.574, "delta": 84.773, "epsilon": -118.330, "zeta": 179.880, "epsilon_zeta": 61.790, "bb_type": "BII", "chi": -159.545, "glyco_bond": "anti", "C5prime_xyz": [ -1.192, 8.639, 0.509 ], "P_xyz": [ 1.227, 8.456, -0.496 ], "form": ".", "ssZp": 4.254, "Dp": 4.741, "splay_angle": 101.949, "splay_distance": 14.062, "splay_ratio": 0.777, "d22": null, "d64": null, "eta": 172.874, "theta": 138.595, "eta_prime": -154.915, "theta_prime": 150.815, "eta_base": -91.852, "theta_base": -174.425, "v0": 4.371, "v1": -24.862, "v2": 34.726, "v3": -33.169, "v4": 18.217, "amplitude": 35.464, "phase_angle": 11.710, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.788, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 168.493, 215.598, 232.566 ], "x_axis": [ 0.628, 0.535, 0.564 ], "y_axis": [ 0.499, -0.834, 0.235 ], "z_axis": [ 0.596, 0.134, -0.791 ], "quaternion": [ 0.028, 0.902, 0.287, 0.322 ] } }, { "index": 1321, "index_chain": 1321, "chain_name": "2", "nt_resnum": 1484, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1484", "linked_nts": [ "///2/1483", "///2/1485" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -44.773, "beta": 152.335, "gamma": 63.366, "delta": 81.388, "epsilon": -127.248, "zeta": -89.171, "epsilon_zeta": -38.077, "bb_type": "--", "chi": 167.087, "glyco_bond": "anti", "C5prime_xyz": [ -1.751, 8.095, 2.293 ], "P_xyz": [ 0.810, 8.288, 2.813 ], "form": "A", "ssZp": 4.610, "Dp": 4.687, "splay_angle": 27.573, "splay_distance": 4.178, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": -134.192, "theta": -142.478, "eta_prime": -150.129, "theta_prime": -140.523, "eta_base": -177.454, "theta_base": -118.729, "v0": 1.156, "v1": -23.059, "v2": 34.938, "v3": -35.235, "v4": 21.515, "amplitude": 36.502, "phase_angle": 16.834, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.202, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 173.242, 209.261, 220.945 ], "x_axis": [ -0.048, 0.978, 0.205 ], "y_axis": [ -0.295, -0.210, 0.932 ], "z_axis": [ 0.954, -0.016, 0.298 ], "quaternion": [ 0.510, 0.465, 0.367, 0.624 ] } }, { "index": 1322, "index_chain": 1322, "chain_name": "2", "nt_resnum": 1485, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1485", "linked_nts": [ "///2/1484", "///2/1486" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -66.295, "beta": 173.575, "gamma": 52.652, "delta": 82.807, "epsilon": -134.946, "zeta": -61.119, "epsilon_zeta": -73.828, "bb_type": "BI", "chi": -173.140, "glyco_bond": "anti", "C5prime_xyz": [ -1.337, 8.499, 1.314 ], "P_xyz": [ 1.202, 8.665, 1.952 ], "form": ".", "ssZp": 4.633, "Dp": 4.698, "splay_angle": 31.589, "splay_distance": 4.794, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 168.810, "theta": -120.844, "eta_prime": 178.029, "theta_prime": -116.493, "eta_base": -147.827, "theta_base": -60.532, "v0": 4.186, "v1": -25.373, "v2": 35.719, "v3": -34.295, "v4": 18.999, "amplitude": 36.542, "phase_angle": 12.184, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.621, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 177.291, 209.643, 219.987 ], "x_axis": [ -0.307, 0.661, 0.685 ], "y_axis": [ -0.292, -0.750, 0.593 ], "z_axis": [ 0.906, -0.018, 0.423 ], "quaternion": [ 0.303, 0.505, 0.183, 0.787 ] } }, { "index": 1323, "index_chain": 1323, "chain_name": "2", "nt_resnum": 1486, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1486", "linked_nts": [ "///2/1485", "///2/1487" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop,phosphate", "alpha": -64.486, "beta": 164.743, "gamma": 54.022, "delta": 82.997, "epsilon": -134.626, "zeta": -100.662, "epsilon_zeta": -33.964, "bb_type": "--", "chi": -169.061, "glyco_bond": "anti", "C5prime_xyz": [ -1.268, 8.540, 1.085 ], "P_xyz": [ 1.346, 8.659, 1.315 ], "form": "A", "ssZp": 4.601, "Dp": 4.714, "splay_angle": 24.624, "splay_distance": 3.827, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 160.447, "theta": -157.157, "eta_prime": -172.432, "theta_prime": -156.362, "eta_base": -91.629, "theta_base": -151.378, "v0": 4.596, "v1": -25.552, "v2": 35.666, "v3": -33.976, "v4": 18.545, "amplitude": 36.399, "phase_angle": 11.520, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.837, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 178.519, 211.012, 224.415 ], "x_axis": [ -0.454, -0.332, 0.827 ], "y_axis": [ 0.170, -0.943, -0.285 ], "z_axis": [ 0.874, 0.011, 0.485 ], "quaternion": [ -0.148, 0.501, -0.081, 0.849 ] } }, { "index": 1324, "index_chain": 1324, "chain_name": "2", "nt_resnum": 1487, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1487", "linked_nts": [ "///2/1486", "///2/1488" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,phosphate", "alpha": -56.659, "beta": 140.760, "gamma": 68.022, "delta": 82.069, "epsilon": -152.321, "zeta": -74.371, "epsilon_zeta": -77.951, "bb_type": "BI", "chi": -174.114, "glyco_bond": "anti", "C5prime_xyz": [ -1.796, 8.594, 1.313 ], "P_xyz": [ 0.774, 8.999, 1.017 ], "form": "A", "ssZp": 4.440, "Dp": 4.501, "splay_angle": 27.442, "splay_distance": 4.306, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 168.445, "theta": -144.074, "eta_prime": -178.076, "theta_prime": -142.316, "eta_base": -159.619, "theta_base": -123.752, "v0": -0.836, "v1": -21.014, "v2": 33.548, "v3": -34.976, "v4": 22.603, "amplitude": 35.682, "phase_angle": 19.912, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.202, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 181.468, 213.256, 225.372 ], "x_axis": [ -0.442, -0.583, 0.682 ], "y_axis": [ 0.344, -0.812, -0.471 ], "z_axis": [ 0.829, 0.026, 0.559 ], "quaternion": [ -0.276, 0.450, -0.133, 0.839 ] } }, { "index": 1325, "index_chain": 1325, "chain_name": "2", "nt_resnum": 1488, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1488", "linked_nts": [ "///2/1487", "///2/1489" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,splayed-apart", "alpha": -58.923, "beta": -176.468, "gamma": 69.323, "delta": 146.585, "epsilon": -108.352, "zeta": -72.833, "epsilon_zeta": -35.519, "bb_type": "--", "chi": -129.377, "glyco_bond": "anti", "C5prime_xyz": [ -1.799, 8.699, -0.717 ], "P_xyz": [ 0.660, 9.266, 0.015 ], "form": ".", "ssZp": 1.160, "Dp": 1.151, "splay_angle": 107.503, "splay_distance": 17.256, "splay_ratio": 0.807, "d22": null, "d64": null, "eta": -152.669, "theta": -33.671, "eta_prime": -127.913, "theta_prime": -64.624, "eta_base": -107.719, "theta_base": -55.497, "v0": -21.244, "v1": 35.382, "v2": -35.282, "v3": 23.905, "v4": -1.860, "amplitude": 36.679, "phase_angle": 164.134, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.760, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 183.853, 214.488, 228.739 ], "x_axis": [ -0.202, -0.935, 0.293 ], "y_axis": [ 0.579, -0.355, -0.734 ], "z_axis": [ 0.790, 0.021, 0.613 ], "quaternion": [ 0.514, -0.368, 0.242, -0.737 ] } }, { "index": 1326, "index_chain": 1326, "chain_name": "2", "nt_resnum": 1489, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1489", "linked_nts": [ "///2/1488", "///2/1490" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,bulge,cap-acceptor,splayed-apart", "alpha": 99.925, "beta": -140.614, "gamma": -61.600, "delta": 148.236, "epsilon": -71.131, "zeta": -30.588, "epsilon_zeta": -40.544, "bb_type": "--", "chi": -105.133, "glyco_bond": "anti", "C5prime_xyz": [ -2.265, 8.189, -1.883 ], "P_xyz": [ -2.610, 10.500, -3.082 ], "form": ".", "ssZp": 0.187, "Dp": 0.210, "splay_angle": 131.889, "splay_distance": 16.268, "splay_ratio": 0.914, "d22": null, "d64": null, "eta": -85.937, "theta": -37.284, "eta_prime": -50.148, "theta_prime": -34.133, "eta_base": -41.625, "theta_base": 128.889, "v0": -21.777, "v1": 36.380, "v2": -36.248, "v3": 24.609, "v4": -1.972, "amplitude": 37.672, "phase_angle": 164.196, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 199.948, 211.065, 223.540 ], "x_axis": [ 0.551, 0.170, -0.817 ], "y_axis": [ -0.566, 0.795, -0.217 ], "z_axis": [ 0.612, 0.582, 0.535 ], "quaternion": [ 0.849, -0.236, 0.421, 0.217 ] } }, { "index": 1327, "index_chain": 1327, "chain_name": "2", "nt_resnum": 1490, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1490", "linked_nts": [ "///2/1489", "///2/1491" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,canonical,non-pair-contact,helix,stem-end,bulge,phosphate,splayed-apart", "alpha": -81.249, "beta": -101.158, "gamma": 100.490, "delta": 80.879, "epsilon": -126.289, "zeta": -84.507, "epsilon_zeta": -41.782, "bb_type": "--", "chi": 179.665, "glyco_bond": "--", "C5prime_xyz": [ -1.535, 8.464, 1.694 ], "P_xyz": [ 0.895, 7.510, 2.011 ], "form": "A", "ssZp": 4.697, "Dp": 4.713, "splay_angle": 21.950, "splay_distance": 3.554, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": -125.124, "theta": -120.082, "eta_prime": -93.262, "theta_prime": -125.067, "eta_base": 122.048, "theta_base": -116.558, "v0": 2.125, "v1": -24.097, "v2": 35.711, "v3": -35.500, "v4": 21.038, "amplitude": 37.045, "phase_angle": 15.421, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 186.798, 215.023, 232.261 ], "x_axis": [ 0.213, -0.955, -0.204 ], "y_axis": [ 0.471, 0.284, -0.835 ], "z_axis": [ 0.856, 0.082, 0.511 ], "quaternion": [ 0.708, -0.324, 0.374, -0.503 ] } }, { "index": 1328, "index_chain": 1328, "chain_name": "2", "nt_resnum": 1491, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1491", "linked_nts": [ "///2/1490", "///2/1492" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -66.885, "beta": 175.843, "gamma": 46.817, "delta": 81.600, "epsilon": -150.090, "zeta": -77.043, "epsilon_zeta": -73.047, "bb_type": "BI", "chi": -160.129, "glyco_bond": "anti", "C5prime_xyz": [ -1.476, 8.817, 0.539 ], "P_xyz": [ 1.021, 9.387, 1.090 ], "form": "A", "ssZp": 4.365, "Dp": 4.556, "splay_angle": 22.953, "splay_distance": 3.624, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 159.638, "theta": -149.506, "eta_prime": 170.945, "theta_prime": -146.191, "eta_base": -156.675, "theta_base": -112.615, "v0": 0.120, "v1": -21.960, "v2": 34.162, "v3": -35.057, "v4": 22.051, "amplitude": 36.008, "phase_angle": 18.426, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.645, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 188.531, 214.129, 235.232 ], "x_axis": [ 0.158, -0.597, -0.786 ], "y_axis": [ 0.366, 0.775, -0.515 ], "z_axis": [ 0.917, -0.206, 0.341 ], "quaternion": [ 0.754, -0.102, 0.565, -0.319 ] } }, { "index": 1329, "index_chain": 1329, "chain_name": "2", "nt_resnum": 1492, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1492", "linked_nts": [ "///2/1491", "///2/1493" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,phosphate", "alpha": -58.160, "beta": 165.165, "gamma": 54.648, "delta": 82.818, "epsilon": -101.452, "zeta": -106.848, "epsilon_zeta": 5.396, "bb_type": "--", "chi": -157.412, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.731, 0.384 ], "P_xyz": [ 1.267, 9.028, 0.347 ], "form": ".", "ssZp": 3.929, "Dp": 4.676, "splay_angle": 56.704, "splay_distance": 9.949, "splay_ratio": 0.479, "d22": 7.205, "d64": 8.445, "eta": -177.011, "theta": -112.472, "eta_prime": -166.971, "theta_prime": -114.612, "eta_base": -127.398, "theta_base": -109.369, "v0": 2.107, "v1": -23.351, "v2": 34.512, "v3": -34.273, "v4": 20.301, "amplitude": 35.785, "phase_angle": 15.329, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 191.539, 212.249, 235.974 ], "x_axis": [ 0.324, -0.037, -0.945 ], "y_axis": [ 0.273, 0.960, 0.056 ], "z_axis": [ 0.906, -0.276, 0.321 ], "quaternion": [ 0.807, 0.103, 0.573, -0.096 ] } }, { "index": 1330, "index_chain": 1330, "chain_name": "2", "nt_resnum": 1493, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1493", "linked_nts": [ "///2/1492", "///2/1494" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate,splayed-apart", "alpha": 72.929, "beta": -160.497, "gamma": -57.617, "delta": 149.902, "epsilon": -131.122, "zeta": 76.516, "epsilon_zeta": 152.362, "bb_type": "--", "chi": -124.667, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.549, -0.913 ], "P_xyz": [ -0.754, 11.071, -0.987 ], "form": ".", "ssZp": 1.555, "Dp": 1.570, "splay_angle": 143.590, "splay_distance": 20.180, "splay_ratio": 0.950, "d22": 11.716, "d64": 14.827, "eta": -138.881, "theta": 32.021, "eta_prime": -125.345, "theta_prime": 1.235, "eta_base": -122.420, "theta_base": -36.871, "v0": -17.142, "v1": 32.917, "v2": -35.257, "v3": 26.267, "v4": -5.908, "amplitude": 35.732, "phase_angle": 170.641, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.534, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 201.240, 210.044, 236.052 ], "x_axis": [ 0.009, 0.329, -0.944 ], "y_axis": [ -0.335, 0.891, 0.307 ], "z_axis": [ 0.942, 0.314, 0.118 ], "quaternion": [ 0.710, -0.002, 0.664, 0.234 ] } }, { "index": 1331, "index_chain": 1331, "chain_name": "2", "nt_resnum": 1494, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1494", "linked_nts": [ "///2/1493", "///2/1495" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,splayed-apart", "alpha": -162.069, "beta": 178.848, "gamma": -51.731, "delta": 148.376, "epsilon": -109.339, "zeta": 113.897, "epsilon_zeta": 136.764, "bb_type": "--", "chi": -119.369, "glyco_bond": "anti", "C5prime_xyz": [ -1.931, 8.488, -1.222 ], "P_xyz": [ -1.302, 11.024, -0.997 ], "form": ".", "ssZp": 1.121, "Dp": 1.138, "splay_angle": 148.191, "splay_distance": 18.969, "splay_ratio": 0.962, "d22": null, "d64": null, "eta": 26.868, "theta": 108.276, "eta_prime": 53.676, "theta_prime": 95.815, "eta_base": 88.213, "theta_base": 112.361, "v0": -20.649, "v1": 35.368, "v2": -35.758, "v3": 24.741, "v4": -2.750, "amplitude": 36.939, "phase_angle": 165.468, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 198.976, 226.714, 247.197 ], "x_axis": [ 0.958, 0.247, -0.145 ], "y_axis": [ 0.175, -0.906, -0.386 ], "z_axis": [ -0.226, 0.344, -0.911 ], "quaternion": [ -0.188, 0.972, 0.109, -0.095 ] } }, { "index": 1332, "index_chain": 1332, "chain_name": "2", "nt_resnum": 1495, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1495", "linked_nts": [ "///2/1494", "///2/1496" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart", "alpha": 25.577, "beta": -175.423, "gamma": 44.481, "delta": 80.833, "epsilon": -146.363, "zeta": -74.239, "epsilon_zeta": -72.124, "bb_type": "BI", "chi": -160.021, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.814, 0.513 ], "P_xyz": [ 0.942, 9.494, 1.232 ], "form": "A", "ssZp": 4.390, "Dp": 4.611, "splay_angle": 25.730, "splay_distance": 4.057, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": -54.206, "theta": -147.485, "eta_prime": -65.038, "theta_prime": -141.767, "eta_base": -71.388, "theta_base": -103.624, "v0": 0.421, "v1": -22.588, "v2": 34.881, "v3": -35.631, "v4": 22.221, "amplitude": 36.673, "phase_angle": 17.981, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6d", "suiteness": 0.124, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 188.487, 210.983, 245.660 ], "x_axis": [ -0.156, 0.018, -0.988 ], "y_axis": [ 0.542, 0.838, -0.070 ], "z_axis": [ 0.826, -0.546, -0.140 ], "quaternion": [ 0.621, 0.192, 0.730, -0.211 ] } }, { "index": 1333, "index_chain": 1333, "chain_name": "2", "nt_resnum": 1496, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1496", "linked_nts": [ "///2/1495", "///2/1497" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,splayed-apart", "alpha": -63.915, "beta": 160.835, "gamma": 66.145, "delta": 83.010, "epsilon": -89.592, "zeta": -153.287, "epsilon_zeta": 63.695, "bb_type": "BII", "chi": -161.407, "glyco_bond": "anti", "C5prime_xyz": [ -1.403, 8.718, 0.603 ], "P_xyz": [ 1.168, 9.073, 0.228 ], "form": ".", "ssZp": 3.937, "Dp": 4.616, "splay_angle": 137.184, "splay_distance": 18.347, "splay_ratio": 0.931, "d22": null, "d64": null, "eta": -172.258, "theta": -155.341, "eta_prime": -160.038, "theta_prime": 170.100, "eta_base": -116.455, "theta_base": 169.598, "v0": 1.899, "v1": -23.258, "v2": 34.540, "v3": -34.387, "v4": 20.541, "amplitude": 35.869, "phase_angle": 15.646, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.688, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 190.973, 208.629, 243.483 ], "x_axis": [ 0.218, 0.524, -0.823 ], "y_axis": [ 0.568, 0.618, 0.544 ], "z_axis": [ 0.793, -0.586, -0.163 ], "quaternion": [ 0.647, 0.437, 0.625, -0.017 ] } }, { "index": 1334, "index_chain": 1334, "chain_name": "2", "nt_resnum": 1497, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1497", "linked_nts": [ "///2/1496", "///2/1498" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 76.964, "beta": -133.158, "gamma": 50.248, "delta": 144.072, "epsilon": -96.892, "zeta": 122.851, "epsilon_zeta": 140.257, "bb_type": "--", "chi": -100.666, "glyco_bond": "anti", "C5prime_xyz": [ -2.485, 8.121, -2.130 ], "P_xyz": [ -0.669, 9.896, -1.480 ], "form": ".", "ssZp": 0.750, "Dp": 0.872, "splay_angle": 128.781, "splay_distance": 17.580, "splay_ratio": 0.902, "d22": null, "d64": null, "eta": 11.674, "theta": 115.580, "eta_prime": 29.956, "theta_prime": 72.714, "eta_base": -3.452, "theta_base": 39.242, "v0": -23.756, "v1": 36.689, "v2": -34.882, "v3": 22.110, "v4": 0.824, "amplitude": 37.130, "phase_angle": 159.960, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.294, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 203.334, 204.800, 256.490 ], "x_axis": [ 0.390, 0.810, 0.438 ], "y_axis": [ -0.589, 0.585, -0.557 ], "z_axis": [ -0.708, -0.040, 0.705 ], "quaternion": [ 0.819, -0.158, -0.350, 0.427 ] } }, { "index": 1335, "index_chain": 1335, "chain_name": "2", "nt_resnum": 1498, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1498", "linked_nts": [ "///2/1497", "///2/1499" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -63.176, "beta": -127.831, "gamma": 161.438, "delta": 80.916, "epsilon": -136.485, "zeta": -64.441, "epsilon_zeta": -72.044, "bb_type": "BI", "chi": -168.436, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.580, 1.023 ], "P_xyz": [ 0.496, 9.245, -0.684 ], "form": ".", "ssZp": 4.616, "Dp": 4.731, "splay_angle": 32.996, "splay_distance": 5.147, "splay_ratio": 0.286, "d22": null, "d64": null, "eta": 4.573, "theta": -132.624, "eta_prime": 16.593, "theta_prime": -136.938, "eta_base": 47.870, "theta_base": -101.838, "v0": 3.985, "v1": -26.006, "v2": 36.920, "v3": -35.628, "v4": 19.960, "amplitude": 37.845, "phase_angle": 12.695, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 195.301, 208.653, 241.334 ], "x_axis": [ -0.056, 0.888, 0.456 ], "y_axis": [ 0.110, -0.448, 0.887 ], "z_axis": [ 0.992, 0.100, -0.073 ], "quaternion": [ 0.325, 0.605, 0.413, 0.598 ] } }, { "index": 1336, "index_chain": 1336, "chain_name": "2", "nt_resnum": 1499, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1499", "linked_nts": [ "///2/1498", "///2/1500" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -61.710, "beta": 168.429, "gamma": 62.959, "delta": 80.057, "epsilon": -115.135, "zeta": -170.597, "epsilon_zeta": 55.462, "bb_type": "BII", "chi": -161.498, "glyco_bond": "anti", "C5prime_xyz": [ -1.461, 8.735, 0.601 ], "P_xyz": [ 1.109, 9.224, 0.410 ], "form": ".", "ssZp": 4.285, "Dp": 4.746, "splay_angle": 64.551, "splay_distance": 9.534, "splay_ratio": 0.535, "d22": null, "d64": null, "eta": 178.641, "theta": 144.149, "eta_prime": -160.612, "theta_prime": 156.741, "eta_base": -105.401, "theta_base": 174.058, "v0": 1.767, "v1": -24.386, "v2": 36.509, "v3": -36.492, "v4": 21.886, "amplitude": 37.981, "phase_angle": 16.002, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.786, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 198.881, 212.098, 242.680 ], "x_axis": [ 0.072, 0.237, 0.969 ], "y_axis": [ 0.155, -0.962, 0.224 ], "z_axis": [ 0.985, 0.134, -0.106 ], "quaternion": [ 0.030, 0.731, 0.134, 0.668 ] } }, { "index": 1337, "index_chain": 1337, "chain_name": "2", "nt_resnum": 1500, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1500", "linked_nts": [ "///2/1499", "///2/1501" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -50.775, "beta": 134.684, "gamma": 44.481, "delta": 80.688, "epsilon": -130.246, "zeta": -71.831, "epsilon_zeta": -58.415, "bb_type": "BI", "chi": -178.467, "glyco_bond": "anti", "C5prime_xyz": [ -1.486, 8.480, 1.602 ], "P_xyz": [ 1.119, 8.301, 1.788 ], "form": ".", "ssZp": 4.712, "Dp": 4.727, "splay_angle": 28.793, "splay_distance": 4.416, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": -174.542, "theta": -121.119, "eta_prime": 176.471, "theta_prime": -121.698, "eta_base": 168.476, "theta_base": -78.036, "v0": 2.936, "v1": -24.989, "v2": 36.357, "v3": -35.672, "v4": 20.645, "amplitude": 37.509, "phase_angle": 14.238, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.267, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 205.113, 210.634, 235.615 ], "x_axis": [ -0.313, 0.594, 0.741 ], "y_axis": [ -0.271, -0.804, 0.529 ], "z_axis": [ 0.910, -0.035, 0.413 ], "quaternion": [ 0.272, 0.519, 0.155, 0.795 ] } }, { "index": 1338, "index_chain": 1338, "chain_name": "2", "nt_resnum": 1501, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1501", "linked_nts": [ "///2/1500", "///2/1502" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.891, "beta": 160.287, "gamma": 55.170, "delta": 80.457, "epsilon": -149.717, "zeta": -65.277, "epsilon_zeta": -84.441, "bb_type": "BI", "chi": -174.548, "glyco_bond": "anti", "C5prime_xyz": [ -1.382, 8.578, 1.376 ], "P_xyz": [ 1.214, 8.808, 1.648 ], "form": "A", "ssZp": 4.635, "Dp": 4.639, "splay_angle": 25.074, "splay_distance": 3.932, "splay_ratio": 0.221, "d22": 4.175, "d64": 4.361, "eta": 160.814, "theta": -137.149, "eta_prime": -174.826, "theta_prime": -138.017, "eta_base": -101.230, "theta_base": -107.495, "v0": 2.772, "v1": -25.139, "v2": 36.685, "v3": -36.050, "v4": 20.970, "amplitude": 37.885, "phase_angle": 14.457, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.757, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 207.204, 212.199, 239.176 ], "x_axis": [ -0.442, -0.275, 0.854 ], "y_axis": [ 0.063, -0.959, -0.277 ], "z_axis": [ 0.895, -0.068, 0.441 ], "quaternion": [ -0.100, 0.519, -0.102, 0.843 ] } }, { "index": 1339, "index_chain": 1339, "chain_name": "2", "nt_resnum": 1502, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1502", "linked_nts": [ "///2/1501", "///2/1503" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -69.318, "beta": -179.915, "gamma": 54.348, "delta": 79.923, "epsilon": -150.024, "zeta": -69.954, "epsilon_zeta": -80.070, "bb_type": "BI", "chi": -170.734, "glyco_bond": "anti", "C5prime_xyz": [ -1.345, 8.662, 1.152 ], "P_xyz": [ 1.178, 9.021, 1.783 ], "form": "A", "ssZp": 4.613, "Dp": 4.639, "splay_angle": 23.904, "splay_distance": 3.776, "splay_ratio": 0.210, "d22": 4.170, "d64": 4.409, "eta": 167.228, "theta": -144.820, "eta_prime": -177.337, "theta_prime": -142.420, "eta_base": -127.092, "theta_base": -113.201, "v0": 2.303, "v1": -24.768, "v2": 36.585, "v3": -36.221, "v4": 21.384, "amplitude": 37.906, "phase_angle": 15.173, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.953, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 209.470, 212.996, 242.289 ], "x_axis": [ -0.370, -0.815, 0.445 ], "y_axis": [ 0.292, -0.557, -0.778 ], "z_axis": [ 0.882, -0.158, 0.444 ], "quaternion": [ -0.360, 0.431, -0.304, 0.770 ] } }, { "index": 1340, "index_chain": 1340, "chain_name": "2", "nt_resnum": 1503, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1503", "linked_nts": [ "///2/1502", "///2/1504" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -64.347, "beta": 173.111, "gamma": 56.796, "delta": 80.684, "epsilon": -149.294, "zeta": -69.236, "epsilon_zeta": -80.058, "bb_type": "BI", "chi": -170.329, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.703, 1.107 ], "P_xyz": [ 1.103, 9.109, 1.596 ], "form": "A", "ssZp": 4.546, "Dp": 4.595, "splay_angle": 23.192, "splay_distance": 3.640, "splay_ratio": 0.202, "d22": 4.101, "d64": 4.020, "eta": 170.286, "theta": -142.100, "eta_prime": -174.823, "theta_prime": -140.639, "eta_base": -130.521, "theta_base": -106.768, "v0": 0.851, "v1": -23.094, "v2": 35.287, "v3": -35.763, "v4": 22.015, "amplitude": 36.960, "phase_angle": 17.304, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.975, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 211.482, 212.504, 245.446 ], "x_axis": [ -0.209, -0.971, -0.117 ], "y_axis": [ 0.438, 0.014, -0.899 ], "z_axis": [ 0.874, -0.239, 0.422 ], "quaternion": [ 0.554, -0.298, 0.447, -0.636 ] } }, { "index": 1341, "index_chain": 1341, "chain_name": "2", "nt_resnum": 1504, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1504", "linked_nts": [ "///2/1503", "///2/1505" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.799, "beta": 175.422, "gamma": 53.334, "delta": 82.108, "epsilon": -154.173, "zeta": -76.247, "epsilon_zeta": -77.926, "bb_type": "BI", "chi": -165.083, "glyco_bond": "anti", "C5prime_xyz": [ -1.402, 8.667, 0.837 ], "P_xyz": [ 1.155, 9.041, 1.291 ], "form": "A", "ssZp": 4.482, "Dp": 4.572, "splay_angle": 23.695, "splay_distance": 3.724, "splay_ratio": 0.207, "d22": 4.650, "d64": 4.678, "eta": 166.013, "theta": -151.279, "eta_prime": -177.825, "theta_prime": -150.548, "eta_base": -127.245, "theta_base": -131.845, "v0": 2.409, "v1": -23.949, "v2": 35.188, "v3": -34.779, "v4": 20.424, "amplitude": 36.415, "phase_angle": 14.914, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.992, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 213.546, 210.476, 247.654 ], "x_axis": [ 0.034, -0.725, -0.688 ], "y_axis": [ 0.486, 0.614, -0.622 ], "z_axis": [ 0.873, -0.313, 0.373 ], "quaternion": [ 0.711, -0.109, 0.549, -0.426 ] } }, { "index": 1342, "index_chain": 1342, "chain_name": "2", "nt_resnum": 1505, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1505", "linked_nts": [ "///2/1504", "///2/1506" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -63.356, "beta": 174.410, "gamma": 52.939, "delta": 81.052, "epsilon": -133.379, "zeta": 176.666, "epsilon_zeta": 49.955, "bb_type": "BII", "chi": -161.548, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.699, 0.618 ], "P_xyz": [ 1.221, 9.104, 0.858 ], "form": ".", "ssZp": 4.427, "Dp": 4.719, "splay_angle": 73.587, "splay_distance": 10.512, "splay_ratio": 0.599, "d22": null, "d64": null, "eta": 173.385, "theta": 119.733, "eta_prime": -178.179, "theta_prime": 136.989, "eta_base": -149.553, "theta_base": 138.747, "v0": 2.906, "v1": -24.896, "v2": 36.199, "v3": -35.517, "v4": 20.570, "amplitude": 37.348, "phase_angle": 14.245, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.960, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 215.581, 208.411, 249.990 ], "x_axis": [ 0.228, -0.333, -0.915 ], "y_axis": [ 0.447, 0.870, -0.205 ], "z_axis": [ 0.865, -0.363, 0.347 ], "quaternion": [ 0.782, 0.050, 0.569, -0.249 ] } }, { "index": 1343, "index_chain": 1343, "chain_name": "2", "nt_resnum": 1506, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1506", "linked_nts": [ "///2/1505", "///2/1507" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -52.867, "beta": 128.420, "gamma": 64.756, "delta": 147.828, "epsilon": -129.843, "zeta": 131.905, "epsilon_zeta": 98.252, "bb_type": "--", "chi": -129.723, "glyco_bond": "anti", "C5prime_xyz": [ -2.005, 8.640, -0.678 ], "P_xyz": [ 0.613, 8.472, -0.589 ], "form": ".", "ssZp": 1.477, "Dp": 1.524, "splay_angle": 157.662, "splay_distance": 17.861, "splay_ratio": 0.981, "d22": null, "d64": null, "eta": -173.815, "theta": 156.292, "eta_prime": -150.380, "theta_prime": 70.669, "eta_base": -179.233, "theta_base": 83.765, "v0": -21.714, "v1": 36.268, "v2": -36.150, "v3": 24.575, "v4": -1.999, "amplitude": 37.562, "phase_angle": 164.235, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.115, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 217.175, 213.163, 259.230 ], "x_axis": [ -0.347, -0.819, -0.457 ], "y_axis": [ 0.657, 0.135, -0.741 ], "z_axis": [ 0.669, -0.557, 0.492 ], "quaternion": [ 0.566, -0.081, 0.497, -0.653 ] } }, { "index": 1344, "index_chain": 1344, "chain_name": "2", "nt_resnum": 1507, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1507", "linked_nts": [ "///2/1506", "///2/1508" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,junction-loop,phosphate,splayed-apart", "alpha": 40.019, "beta": -127.583, "gamma": 71.249, "delta": 147.962, "epsilon": -92.980, "zeta": -81.752, "epsilon_zeta": -11.228, "bb_type": "--", "chi": -56.365, "glyco_bond": "--", "C5prime_xyz": [ -3.530, 6.305, -3.120 ], "P_xyz": [ -1.280, 7.276, -4.064 ], "form": ".", "ssZp": 0.053, "Dp": 0.754, "splay_angle": 149.829, "splay_distance": 18.744, "splay_ratio": 0.966, "d22": null, "d64": null, "eta": 22.245, "theta": -56.712, "eta_prime": 28.755, "theta_prime": -85.703, "eta_base": -5.495, "theta_base": -10.351, "v0": -20.822, "v1": 35.378, "v2": -35.623, "v3": 24.545, "v4": -2.546, "amplitude": 36.858, "phase_angle": 165.131, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 229.785, 224.821, 254.323 ], "x_axis": [ 0.783, -0.515, -0.348 ], "y_axis": [ -0.594, -0.785, -0.177 ], "z_axis": [ -0.182, 0.345, -0.921 ], "quaternion": [ -0.140, 0.934, -0.297, -0.142 ] } }, { "index": 1345, "index_chain": 1345, "chain_name": "2", "nt_resnum": 1508, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1508", "linked_nts": [ "///2/1507", "///2/1509" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,A-minor,splayed-apart", "alpha": -65.051, "beta": -118.192, "gamma": 69.528, "delta": 146.482, "epsilon": -89.693, "zeta": -169.166, "epsilon_zeta": 79.473, "bb_type": "BII", "chi": -105.145, "glyco_bond": "anti", "C5prime_xyz": [ -2.126, 8.189, -1.917 ], "P_xyz": [ 0.069, 9.105, -0.799 ], "form": ".", "ssZp": 0.563, "Dp": 0.756, "splay_angle": 105.427, "splay_distance": 15.581, "splay_ratio": 0.796, "d22": null, "d64": null, "eta": -121.613, "theta": -121.717, "eta_prime": -78.320, "theta_prime": -177.164, "eta_base": -137.382, "theta_base": 150.757, "v0": -21.098, "v1": 35.144, "v2": -34.991, "v3": 23.715, "v4": -1.829, "amplitude": 36.385, "phase_angle": 164.089, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.384, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 214.452, 214.312, 256.727 ], "x_axis": [ 0.374, -0.041, 0.926 ], "y_axis": [ 0.565, 0.802, -0.193 ], "z_axis": [ -0.735, 0.595, 0.324 ], "quaternion": [ 0.791, -0.249, -0.525, -0.192 ] } }, { "index": 1346, "index_chain": 1346, "chain_name": "2", "nt_resnum": 1509, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1509", "linked_nts": [ "///2/1508", "///2/1510" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 72.718, "beta": -160.504, "gamma": 68.558, "delta": 146.889, "epsilon": -86.601, "zeta": -88.756, "epsilon_zeta": 2.156, "bb_type": "--", "chi": -133.870, "glyco_bond": "anti", "C5prime_xyz": [ -1.840, 8.680, -0.470 ], "P_xyz": [ 0.377, 9.315, 0.787 ], "form": ".", "ssZp": 0.596, "Dp": 0.626, "splay_angle": 121.551, "splay_distance": 16.661, "splay_ratio": 0.873, "d22": null, "d64": null, "eta": 24.021, "theta": -51.596, "eta_prime": 53.495, "theta_prime": -74.729, "eta_base": 61.589, "theta_base": -42.432, "v0": -20.855, "v1": 35.205, "v2": -35.286, "v3": 24.183, "v4": -2.315, "amplitude": 36.570, "phase_angle": 164.773, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.511, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 213.604, 218.397, 241.715 ], "x_axis": [ 0.944, 0.058, -0.325 ], "y_axis": [ 0.272, 0.422, 0.865 ], "z_axis": [ 0.187, -0.905, 0.383 ], "quaternion": [ 0.829, 0.534, 0.154, -0.065 ] } }, { "index": 1347, "index_chain": 1347, "chain_name": "2", "nt_resnum": 1510, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1510", "linked_nts": [ "///2/1509", "///2/1511" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,A-minor,splayed-apart", "alpha": -86.463, "beta": -164.412, "gamma": 67.138, "delta": 83.772, "epsilon": -143.796, "zeta": -68.076, "epsilon_zeta": -75.720, "bb_type": "BI", "chi": -164.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.644, 0.840 ], "P_xyz": [ 1.320, 8.804, 1.313 ], "form": "A", "ssZp": 4.522, "Dp": 4.660, "splay_angle": 27.212, "splay_distance": 4.241, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 159.713, "theta": -133.117, "eta_prime": -160.862, "theta_prime": -130.183, "eta_base": -144.300, "theta_base": -92.453, "v0": 4.503, "v1": -25.206, "v2": 35.155, "v3": -33.551, "v4": 18.355, "amplitude": 35.887, "phase_angle": 11.593, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.482, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 214.627, 218.602, 258.344 ], "x_axis": [ 0.591, 0.750, -0.297 ], "y_axis": [ -0.499, 0.051, -0.865 ], "z_axis": [ -0.634, 0.659, 0.404 ], "quaternion": [ 0.715, -0.533, -0.118, 0.437 ] } }, { "index": 1348, "index_chain": 1348, "chain_name": "2", "nt_resnum": 1511, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1511", "linked_nts": [ "///2/1510", "///2/1512" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -64.634, "beta": 168.013, "gamma": 59.570, "delta": 81.572, "epsilon": -145.045, "zeta": -77.988, "epsilon_zeta": -67.057, "bb_type": "BI", "chi": -161.544, "glyco_bond": "anti", "C5prime_xyz": [ -1.337, 8.686, 0.624 ], "P_xyz": [ 1.267, 9.006, 0.525 ], "form": "A", "ssZp": 4.469, "Dp": 4.667, "splay_angle": 19.831, "splay_distance": 3.144, "splay_ratio": 0.173, "d22": 4.233, "d64": 4.064, "eta": 168.349, "theta": -145.348, "eta_prime": -170.994, "theta_prime": -146.009, "eta_base": -114.358, "theta_base": -121.161, "v0": 3.384, "v1": -25.109, "v2": 36.123, "v3": -35.141, "v4": 20.031, "amplitude": 37.148, "phase_angle": 13.495, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.915, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 213.868, 222.637, 259.401 ], "x_axis": [ 0.090, 0.575, -0.813 ], "y_axis": [ -0.798, -0.446, -0.405 ], "z_axis": [ -0.596, 0.686, 0.419 ], "quaternion": [ 0.515, -0.529, 0.105, 0.666 ] } }, { "index": 1349, "index_chain": 1349, "chain_name": "2", "nt_resnum": 1512, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1512", "linked_nts": [ "///2/1511", "///2/1513" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -63.830, "beta": 164.938, "gamma": 57.716, "delta": 81.149, "epsilon": -140.525, "zeta": -74.233, "epsilon_zeta": -66.292, "bb_type": "BI", "chi": -157.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.359, 8.801, 0.384 ], "P_xyz": [ 1.231, 9.168, 0.193 ], "form": "A", "ssZp": 4.333, "Dp": 4.659, "splay_angle": 28.123, "splay_distance": 4.439, "splay_ratio": 0.243, "d22": 3.948, "d64": 3.689, "eta": 167.699, "theta": -138.963, "eta_prime": -179.241, "theta_prime": -138.299, "eta_base": -139.657, "theta_base": -105.465, "v0": 1.483, "v1": -23.594, "v2": 35.501, "v3": -35.624, "v4": 21.524, "amplitude": 36.998, "phase_angle": 16.359, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.922, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 213.217, 225.577, 260.308 ], "x_axis": [ -0.292, 0.177, -0.940 ], "y_axis": [ -0.822, -0.549, 0.152 ], "z_axis": [ -0.489, 0.817, 0.306 ], "quaternion": [ 0.341, -0.488, 0.330, 0.733 ] } }, { "index": 1350, "index_chain": 1350, "chain_name": "2", "nt_resnum": 1513, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1513", "linked_nts": [ "///2/1512", "///2/1514" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -70.084, "beta": 176.341, "gamma": 53.136, "delta": 81.770, "epsilon": -159.171, "zeta": -79.435, "epsilon_zeta": -79.737, "bb_type": "BI", "chi": -165.803, "glyco_bond": "anti", "C5prime_xyz": [ -1.236, 8.674, 0.878 ], "P_xyz": [ 1.341, 8.945, 1.294 ], "form": ".", "ssZp": 4.519, "Dp": 4.575, "splay_angle": 24.023, "splay_distance": 3.780, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 161.311, "theta": -159.113, "eta_prime": 177.022, "theta_prime": -159.577, "eta_base": -133.306, "theta_base": -157.381, "v0": 3.561, "v1": -25.158, "v2": 35.996, "v3": -34.932, "v4": 19.775, "amplitude": 36.973, "phase_angle": 13.202, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.949, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 210.856, 229.243, 259.474 ], "x_axis": [ -0.476, -0.568, -0.672 ], "y_axis": [ -0.403, -0.538, 0.741 ], "z_axis": [ -0.782, 0.623, 0.027 ], "quaternion": [ -0.058, -0.509, 0.477, 0.714 ] } }, { "index": 1351, "index_chain": 1351, "chain_name": "2", "nt_resnum": 1514, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1514", "linked_nts": [ "///2/1513", "///2/1515" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -67.635, "beta": -179.351, "gamma": 49.524, "delta": 81.306, "epsilon": -147.056, "zeta": -33.556, "epsilon_zeta": -113.499, "bb_type": "BI", "chi": -163.549, "glyco_bond": "anti", "C5prime_xyz": [ -1.284, 8.714, 0.745 ], "P_xyz": [ 1.253, 9.089, 1.299 ], "form": ".", "ssZp": 4.506, "Dp": 4.651, "splay_angle": 23.187, "splay_distance": 4.360, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 168.968, "theta": -123.516, "eta_prime": 172.924, "theta_prime": -138.048, "eta_base": -176.163, "theta_base": -144.113, "v0": 3.174, "v1": -24.891, "v2": 35.955, "v3": -35.123, "v4": 20.162, "amplitude": 37.027, "phase_angle": 13.820, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.871, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 210.386, 232.957, 258.954 ], "x_axis": [ -0.441, -0.816, -0.373 ], "y_axis": [ -0.290, -0.263, 0.920 ], "z_axis": [ -0.849, 0.514, -0.121 ], "quaternion": [ -0.209, -0.486, 0.570, 0.629 ] } }, { "index": 1352, "index_chain": 1352, "chain_name": "2", "nt_resnum": 1515, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1515", "linked_nts": [ "///2/1514", "///2/1516" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet", "alpha": -141.872, "beta": 111.263, "gamma": 160.132, "delta": 82.415, "epsilon": -142.671, "zeta": -72.798, "epsilon_zeta": -69.873, "bb_type": "BI", "chi": 174.914, "glyco_bond": "anti", "C5prime_xyz": [ -1.568, 8.326, 1.945 ], "P_xyz": [ -1.135, 10.669, 0.854 ], "form": ".", "ssZp": 4.555, "Dp": 4.624, "splay_angle": 25.645, "splay_distance": 4.249, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 175.934, "theta": -161.353, "eta_prime": 179.309, "theta_prime": -157.095, "eta_base": -170.631, "theta_base": -109.045, "v0": 2.380, "v1": -23.609, "v2": 34.661, "v3": -34.299, "v4": 20.141, "amplitude": 35.873, "phase_angle": 14.933, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.010, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 209.044, 235.585, 255.744 ], "x_axis": [ -0.290, -0.938, -0.190 ], "y_axis": [ -0.265, -0.112, 0.958 ], "z_axis": [ -0.920, 0.328, -0.216 ], "quaternion": [ -0.309, -0.509, 0.590, 0.544 ] } }, { "index": 1353, "index_chain": 1353, "chain_name": "2", "nt_resnum": 1516, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1516", "linked_nts": [ "///2/1515", "///2/1517" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,A-minor", "alpha": 166.848, "beta": -162.863, "gamma": 157.298, "delta": 82.696, "epsilon": -127.761, "zeta": -74.171, "epsilon_zeta": -53.590, "bb_type": "BI", "chi": 176.837, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.291, 1.864 ], "P_xyz": [ 0.685, 9.699, 1.109 ], "form": "A", "ssZp": 4.731, "Dp": 4.742, "splay_angle": 25.958, "splay_distance": 4.010, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 149.003, "theta": -145.227, "eta_prime": 174.061, "theta_prime": -142.793, "eta_base": -119.472, "theta_base": -97.222, "v0": 4.855, "v1": -25.756, "v2": 35.740, "v3": -33.950, "v4": 18.375, "amplitude": 36.430, "phase_angle": 11.167, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.243, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 205.683, 234.261, 253.507 ], "x_axis": [ -0.359, -0.722, 0.591 ], "y_axis": [ 0.006, 0.631, 0.775 ], "z_axis": [ -0.933, 0.282, -0.223 ], "quaternion": [ 0.512, 0.241, -0.744, -0.355 ] } }, { "index": 1354, "index_chain": 1354, "chain_name": "2", "nt_resnum": 1517, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1517", "linked_nts": [ "///2/1516", "///2/1518" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -56.908, "beta": 164.554, "gamma": 50.357, "delta": 81.150, "epsilon": -135.452, "zeta": -90.068, "epsilon_zeta": -45.383, "bb_type": "BI", "chi": -169.185, "glyco_bond": "anti", "C5prime_xyz": [ -1.425, 8.639, 1.068 ], "P_xyz": [ 1.156, 8.943, 1.396 ], "form": ".", "ssZp": 4.605, "Dp": 4.710, "splay_angle": 41.067, "splay_distance": 5.818, "splay_ratio": 0.387, "d22": null, "d64": null, "eta": 163.798, "theta": -148.455, "eta_prime": -175.653, "theta_prime": -145.636, "eta_base": -111.342, "theta_base": -84.374, "v0": 2.968, "v1": -24.806, "v2": 36.012, "v3": -35.327, "v4": 20.398, "amplitude": 37.139, "phase_angle": 14.154, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 201.859, 233.076, 253.738 ], "x_axis": [ -0.228, -0.012, 0.974 ], "y_axis": [ 0.255, 0.964, 0.072 ], "z_axis": [ -0.940, 0.265, -0.217 ], "quaternion": [ 0.616, -0.078, -0.776, -0.108 ] } }, { "index": 1355, "index_chain": 1355, "chain_name": "2", "nt_resnum": 1518, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1518", "linked_nts": [ "///2/1517", "///2/1519" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-pair-contact,junction-loop", "alpha": -52.887, "beta": 159.335, "gamma": 59.672, "delta": 79.654, "epsilon": -150.289, "zeta": 62.576, "epsilon_zeta": 147.135, "bb_type": "--", "chi": 51.453, "glyco_bond": "syn", "C5prime_xyz": [ -5.538, 4.228, 1.265 ], "P_xyz": [ -5.418, 1.875, 2.410 ], "form": ".", "ssZp": -3.145, "Dp": 4.447, "splay_angle": 42.469, "splay_distance": 6.956, "splay_ratio": 0.381, "d22": 7.514, "d64": 8.407, "eta": 174.815, "theta": 19.054, "eta_prime": -173.302, "theta_prime": -23.045, "eta_base": -100.813, "theta_base": -78.030, "v0": -4.539, "v1": -18.260, "v2": 32.685, "v3": -36.283, "v4": 25.717, "amplitude": 36.254, "phase_angle": 25.638, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.613, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 197.557, 236.941, 254.377 ], "x_axis": [ 0.093, -0.801, 0.592 ], "y_axis": [ 0.374, -0.522, -0.766 ], "z_axis": [ 0.923, 0.293, 0.251 ], "quaternion": [ -0.453, 0.584, -0.182, 0.648 ] } }, { "index": 1356, "index_chain": 1356, "chain_name": "2", "nt_resnum": 1519, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1519", "linked_nts": [ "///2/1518", "///2/1520" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 56.335, "beta": 141.718, "gamma": 165.926, "delta": 146.412, "epsilon": -109.299, "zeta": -60.783, "epsilon_zeta": -48.516, "bb_type": "--", "chi": -123.138, "glyco_bond": "anti", "C5prime_xyz": [ -2.056, 8.579, -1.057 ], "P_xyz": [ -1.124, 9.695, -3.246 ], "form": ".", "ssZp": 1.171, "Dp": 1.161, "splay_angle": 136.669, "splay_distance": 16.500, "splay_ratio": 0.931, "d22": null, "d64": null, "eta": 97.918, "theta": -113.368, "eta_prime": 125.441, "theta_prime": -91.180, "eta_base": 143.479, "theta_base": -59.563, "v0": -22.614, "v1": 36.400, "v2": -35.525, "v3": 23.371, "v4": -0.692, "amplitude": 37.296, "phase_angle": 162.272, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "5q", "suiteness": 0.591, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 193.995, 242.700, 255.969 ], "x_axis": [ 0.478, -0.698, 0.533 ], "y_axis": [ 0.481, -0.300, -0.824 ], "z_axis": [ 0.735, 0.650, 0.192 ], "quaternion": [ 0.585, -0.630, 0.086, -0.504 ] } }, { "index": 1357, "index_chain": 1357, "chain_name": "2", "nt_resnum": 1520, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1520", "linked_nts": [ "///2/1519", "///2/1521" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart", "alpha": -54.133, "beta": 157.434, "gamma": 73.419, "delta": 83.977, "epsilon": -85.657, "zeta": -114.012, "epsilon_zeta": 28.354, "bb_type": "--", "chi": 115.900, "glyco_bond": "--", "C5prime_xyz": [ -3.315, 6.280, 3.378 ], "P_xyz": [ -1.411, 5.613, 5.064 ], "form": ".", "ssZp": 2.807, "Dp": 4.479, "splay_angle": 19.472, "splay_distance": 2.938, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": -169.850, "theta": -76.010, "eta_prime": -123.472, "theta_prime": -85.343, "eta_base": -95.443, "theta_base": -73.280, "v0": 0.661, "v1": -22.107, "v2": 33.815, "v3": -34.385, "v4": 21.309, "amplitude": 35.467, "phase_angle": 17.556, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.178, "filter_rmsd": 0.021, "frame": { "rmsd": 0.021, "origin": [ 201.403, 244.135, 241.295 ], "x_axis": [ -0.162, -0.958, -0.237 ], "y_axis": [ -0.161, -0.212, 0.964 ], "z_axis": [ -0.974, 0.194, -0.120 ], "quaternion": [ -0.356, -0.541, 0.517, 0.560 ] } }, { "index": 1358, "index_chain": 1358, "chain_name": "2", "nt_resnum": 1521, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1521", "linked_nts": [ "///2/1520", "///2/1522" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor", "alpha": 176.534, "beta": -138.552, "gamma": 150.424, "delta": 145.050, "epsilon": -118.675, "zeta": 169.356, "epsilon_zeta": 71.969, "bb_type": "BII", "chi": -126.419, "glyco_bond": "anti", "C5prime_xyz": [ -1.786, 8.684, -0.898 ], "P_xyz": [ 0.665, 8.600, -1.806 ], "form": ".", "ssZp": 1.391, "Dp": 1.403, "splay_angle": 29.005, "splay_distance": 5.005, "splay_ratio": 0.277, "d22": null, "d64": null, "eta": 145.463, "theta": -170.459, "eta_prime": -164.300, "theta_prime": 163.948, "eta_base": -130.203, "theta_base": 146.680, "v0": -21.720, "v1": 35.211, "v2": -34.563, "v3": 22.901, "v4": -0.935, "amplitude": 36.197, "phase_angle": 162.718, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 199.185, 244.933, 239.542 ], "x_axis": [ -0.367, -0.735, 0.571 ], "y_axis": [ -0.188, 0.659, 0.728 ], "z_axis": [ -0.911, 0.160, -0.380 ], "quaternion": [ -0.478, -0.297, 0.776, 0.286 ] } }, { "index": 1359, "index_chain": 1359, "chain_name": "2", "nt_resnum": 1522, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1522", "linked_nts": [ "///2/1521", "///2/1523" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,bulge,A-minor", "alpha": 31.125, "beta": 123.297, "gamma": -89.298, "delta": 79.484, "epsilon": -150.105, "zeta": -56.688, "epsilon_zeta": -93.417, "bb_type": "BI", "chi": 26.224, "glyco_bond": "syn", "C5prime_xyz": [ -5.396, 3.340, -0.252 ], "P_xyz": [ -7.297, 2.455, -1.827 ], "form": ".", "ssZp": -4.345, "Dp": 4.650, "splay_angle": 37.236, "splay_distance": 5.996, "splay_ratio": 0.339, "d22": null, "d64": null, "eta": 116.842, "theta": -142.899, "eta_prime": 98.962, "theta_prime": -126.813, "eta_base": 106.608, "theta_base": -120.932, "v0": 2.301, "v1": -25.022, "v2": 36.941, "v3": -36.618, "v4": 21.625, "amplitude": 38.283, "phase_angle": 15.214, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 200.965, 248.884, 237.037 ], "x_axis": [ 0.060, -0.563, -0.824 ], "y_axis": [ -0.080, 0.820, -0.566 ], "z_axis": [ 0.995, 0.100, 0.004 ], "quaternion": [ 0.686, -0.243, 0.663, -0.176 ] } }, { "index": 1360, "index_chain": 1360, "chain_name": "2", "nt_resnum": 1523, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1523", "linked_nts": [ "///2/1522", "///2/1524" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": 175.115, "beta": -146.830, "gamma": 170.427, "delta": 82.866, "epsilon": -157.375, "zeta": -73.234, "epsilon_zeta": -84.142, "bb_type": "BI", "chi": -170.809, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.659, 1.168 ], "P_xyz": [ 0.494, 9.893, -0.212 ], "form": "A", "ssZp": 4.458, "Dp": 4.501, "splay_angle": 25.284, "splay_distance": 3.913, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 179.324, "theta": -168.027, "eta_prime": -144.109, "theta_prime": -167.881, "eta_base": -139.125, "theta_base": -146.757, "v0": 1.149, "v1": -22.325, "v2": 33.763, "v3": -34.058, "v4": 20.763, "amplitude": 35.265, "phase_angle": 16.787, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.467, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 196.418, 245.001, 236.597 ], "x_axis": [ 0.025, -0.090, 0.996 ], "y_axis": [ -0.065, 0.994, 0.091 ], "z_axis": [ -0.998, -0.067, 0.019 ], "quaternion": [ 0.714, 0.055, -0.698, -0.009 ] } }, { "index": 1361, "index_chain": 1361, "chain_name": "2", "nt_resnum": 1524, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1524", "linked_nts": [ "///2/1523", "///2/1525" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -73.853, "beta": -168.859, "gamma": 53.367, "delta": 84.713, "epsilon": -163.800, "zeta": -78.825, "epsilon_zeta": -84.975, "bb_type": "BI", "chi": -153.299, "glyco_bond": "anti", "C5prime_xyz": [ -1.027, 8.700, 0.183 ], "P_xyz": [ 1.548, 8.891, 0.669 ], "form": "A", "ssZp": 4.227, "Dp": 4.498, "splay_angle": 23.943, "splay_distance": 3.956, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 172.083, "theta": -129.395, "eta_prime": -178.458, "theta_prime": -135.329, "eta_base": -149.001, "theta_base": -116.777, "v0": 5.234, "v1": -25.151, "v2": 34.432, "v3": -32.373, "v4": 17.159, "amplitude": 34.990, "phase_angle": 10.242, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.795, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 193.029, 243.084, 236.208 ], "x_axis": [ 0.024, 0.457, 0.889 ], "y_axis": [ -0.107, 0.885, -0.452 ], "z_axis": [ -0.994, -0.085, 0.070 ], "quaternion": [ 0.703, -0.131, -0.669, 0.201 ] } }, { "index": 1362, "index_chain": 1362, "chain_name": "2", "nt_resnum": 1525, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1525", "linked_nts": [ "///2/1524", "///2/1526" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": 170.316, "beta": -155.921, "gamma": 158.942, "delta": 81.430, "epsilon": -123.382, "zeta": -85.036, "epsilon_zeta": -38.346, "bb_type": "--", "chi": -163.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.115, 8.671, 0.780 ], "P_xyz": [ 0.735, 9.678, -0.778 ], "form": "A", "ssZp": 4.446, "Dp": 4.757, "splay_angle": 23.869, "splay_distance": 3.868, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 163.855, "theta": -152.896, "eta_prime": 179.682, "theta_prime": -150.574, "eta_base": -145.250, "theta_base": -140.057, "v0": 4.191, "v1": -25.715, "v2": 36.286, "v3": -34.879, "v4": 19.348, "amplitude": 37.137, "phase_angle": 12.286, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.308, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 189.668, 242.008, 237.996 ], "x_axis": [ -0.007, 0.819, 0.574 ], "y_axis": [ -0.254, 0.554, -0.793 ], "z_axis": [ -0.967, -0.151, 0.205 ], "quaternion": [ 0.662, -0.242, -0.582, 0.405 ] } }, { "index": 1363, "index_chain": 1363, "chain_name": "2", "nt_resnum": 1526, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1526", "linked_nts": [ "///2/1525", "///2/1527" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -65.008, "beta": -178.267, "gamma": 48.502, "delta": 80.420, "epsilon": -167.363, "zeta": -81.331, "epsilon_zeta": -86.033, "bb_type": "BI", "chi": -124.567, "glyco_bond": "anti", "C5prime_xyz": [ -1.768, 8.556, -1.512 ], "P_xyz": [ 0.674, 9.231, -2.178 ], "form": ".", "ssZp": 3.084, "Dp": 4.453, "splay_angle": 20.412, "splay_distance": 3.358, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 163.930, "theta": -169.466, "eta_prime": 175.983, "theta_prime": -172.257, "eta_base": -164.955, "theta_base": -167.077, "v0": 0.370, "v1": -22.847, "v2": 35.327, "v3": -36.062, "v4": 22.502, "amplitude": 37.147, "phase_angle": 18.009, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.588, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 186.588, 241.312, 240.229 ], "x_axis": [ 0.139, 0.983, 0.123 ], "y_axis": [ -0.544, 0.180, -0.820 ], "z_axis": [ -0.828, 0.047, 0.559 ], "quaternion": [ 0.685, -0.316, -0.347, 0.557 ] } }, { "index": 1364, "index_chain": 1364, "chain_name": "2", "nt_resnum": 1527, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1527", "linked_nts": [ "///2/1526", "///2/1528" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -66.604, "beta": 158.362, "gamma": 64.885, "delta": 80.831, "epsilon": -145.743, "zeta": -65.002, "epsilon_zeta": -80.741, "bb_type": "BI", "chi": -138.317, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.771, -0.792 ], "P_xyz": [ 0.862, 8.944, -1.895 ], "form": ".", "ssZp": 3.556, "Dp": 4.614, "splay_angle": 41.466, "splay_distance": 7.002, "splay_ratio": 0.355, "d22": null, "d64": null, "eta": 168.457, "theta": -103.934, "eta_prime": 175.801, "theta_prime": -113.652, "eta_base": -170.579, "theta_base": -89.107, "v0": 0.592, "v1": -22.756, "v2": 35.035, "v3": -35.638, "v4": 22.134, "amplitude": 36.778, "phase_angle": 17.706, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.590, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 183.909, 240.598, 242.123 ], "x_axis": [ 0.056, 0.995, -0.085 ], "y_axis": [ -0.711, -0.020, -0.703 ], "z_axis": [ -0.701, 0.100, 0.706 ], "quaternion": [ 0.660, -0.304, -0.233, 0.646 ] } }, { "index": 1365, "index_chain": 1365, "chain_name": "2", "nt_resnum": 1528, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1528", "linked_nts": [ "///2/1527", "///2/1529" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": 169.247, "beta": -161.422, "gamma": 165.223, "delta": 82.339, "epsilon": -135.518, "zeta": -84.375, "epsilon_zeta": -51.144, "bb_type": "BI", "chi": 178.125, "glyco_bond": "anti", "C5prime_xyz": [ -1.711, 8.469, 1.760 ], "P_xyz": [ 0.198, 10.110, 1.035 ], "form": "A", "ssZp": 4.539, "Dp": 4.591, "splay_angle": 21.836, "splay_distance": 3.391, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 161.350, "theta": -165.659, "eta_prime": -171.913, "theta_prime": -162.483, "eta_base": -123.367, "theta_base": -130.434, "v0": -0.236, "v1": -21.272, "v2": 33.412, "v3": -34.498, "v4": 21.919, "amplitude": 35.334, "phase_angle": 18.986, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.507, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 180.277, 246.524, 242.969 ], "x_axis": [ 0.143, 0.382, -0.913 ], "y_axis": [ -0.417, -0.813, -0.406 ], "z_axis": [ -0.898, 0.438, 0.043 ], "quaternion": [ -0.305, 0.691, -0.012, -0.655 ] } }, { "index": 1366, "index_chain": 1366, "chain_name": "2", "nt_resnum": 1529, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1529", "linked_nts": [ "///2/1528", "///2/1530" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -64.418, "beta": 170.969, "gamma": 49.141, "delta": 82.126, "epsilon": -146.792, "zeta": -71.468, "epsilon_zeta": -75.324, "bb_type": "BI", "chi": -163.262, "glyco_bond": "anti", "C5prime_xyz": [ -1.174, 8.687, 0.735 ], "P_xyz": [ 1.419, 8.896, 1.074 ], "form": "A", "ssZp": 4.498, "Dp": 4.652, "splay_angle": 26.930, "splay_distance": 4.307, "splay_ratio": 0.235, "d22": 4.630, "d64": 4.917, "eta": 162.940, "theta": -140.540, "eta_prime": 174.737, "theta_prime": -138.297, "eta_base": -142.574, "theta_base": -116.247, "v0": 3.887, "v1": -25.301, "v2": 35.936, "v3": -34.682, "v4": 19.426, "amplitude": 36.837, "phase_angle": 12.697, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.806, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 178.227, 249.192, 243.394 ], "x_axis": [ -0.135, -0.217, -0.967 ], "y_axis": [ -0.460, -0.850, 0.255 ], "z_axis": [ -0.877, 0.480, 0.014 ], "quaternion": [ 0.086, -0.652, 0.260, 0.707 ] } }, { "index": 1367, "index_chain": 1367, "chain_name": "2", "nt_resnum": 1530, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1530", "linked_nts": [ "///2/1529", "///2/1531" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor", "alpha": -59.573, "beta": 173.700, "gamma": 56.668, "delta": 79.647, "epsilon": -131.734, "zeta": -104.256, "epsilon_zeta": -27.477, "bb_type": "--", "chi": -156.734, "glyco_bond": "anti", "C5prime_xyz": [ -1.506, 8.802, 0.313 ], "P_xyz": [ 1.047, 9.394, 0.325 ], "form": "A", "ssZp": 4.231, "Dp": 4.684, "splay_angle": 18.039, "splay_distance": 3.202, "splay_ratio": 0.164, "d22": null, "d64": null, "eta": 178.097, "theta": -127.616, "eta_prime": -168.885, "theta_prime": -137.834, "eta_base": -135.499, "theta_base": -124.991, "v0": 0.146, "v1": -22.804, "v2": 35.528, "v3": -36.440, "v4": 22.873, "amplitude": 37.441, "phase_angle": 18.395, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.959, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 175.328, 252.046, 241.980 ], "x_axis": [ -0.326, -0.640, -0.696 ], "y_axis": [ -0.354, -0.600, 0.718 ], "z_axis": [ -0.877, 0.480, -0.031 ], "quaternion": [ -0.104, -0.571, 0.435, 0.688 ] } }, { "index": 1368, "index_chain": 1368, "chain_name": "2", "nt_resnum": 1531, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1531", "linked_nts": [ "///2/1530", "///2/1532" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": 116.889, "beta": -132.661, "gamma": -165.302, "delta": 81.231, "epsilon": -137.507, "zeta": -89.964, "epsilon_zeta": -47.543, "bb_type": "BI", "chi": -172.512, "glyco_bond": "anti", "C5prime_xyz": [ -1.448, 8.544, 1.261 ], "P_xyz": [ -0.266, 10.215, -0.376 ], "form": "A", "ssZp": 4.645, "Dp": 4.697, "splay_angle": 24.249, "splay_distance": 3.737, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 158.224, "theta": -179.737, "eta_prime": 172.387, "theta_prime": -174.290, "eta_base": -156.343, "theta_base": -144.289, "v0": 2.920, "v1": -24.866, "v2": 36.154, "v3": -35.470, "v4": 20.547, "amplitude": 37.300, "phase_angle": 14.236, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 173.325, 253.611, 240.034 ], "x_axis": [ -0.182, -0.914, -0.361 ], "y_axis": [ -0.396, -0.268, 0.878 ], "z_axis": [ -0.900, 0.303, -0.313 ], "quaternion": [ 0.243, 0.591, -0.554, -0.533 ] } }, { "index": 1369, "index_chain": 1369, "chain_name": "2", "nt_resnum": 1532, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1532", "linked_nts": [ "///2/1531", "///2/1533" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -52.826, "beta": 152.869, "gamma": 60.809, "delta": 83.072, "epsilon": -151.137, "zeta": 64.016, "epsilon_zeta": 144.847, "bb_type": "--", "chi": -169.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.685, 1.102 ], "P_xyz": [ 1.237, 8.874, 1.091 ], "form": ".", "ssZp": 4.465, "Dp": 4.528, "splay_angle": 143.656, "splay_distance": 17.588, "splay_ratio": 0.950, "d22": null, "d64": null, "eta": 172.066, "theta": 25.794, "eta_prime": -172.453, "theta_prime": 19.652, "eta_base": -132.246, "theta_base": 14.480, "v0": 0.974, "v1": -22.263, "v2": 33.834, "v3": -34.229, "v4": 20.979, "amplitude": 35.393, "phase_angle": 17.068, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.565, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 170.770, 254.554, 237.473 ], "x_axis": [ -0.358, -0.918, 0.172 ], "y_axis": [ -0.253, 0.273, 0.928 ], "z_axis": [ -0.899, 0.289, -0.330 ], "quaternion": [ -0.382, -0.418, 0.700, 0.435 ] } }, { "index": 1370, "index_chain": 1370, "chain_name": "2", "nt_resnum": 1533, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1533", "linked_nts": [ "///2/1532", "///2/1534" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart", "alpha": 110.915, "beta": -138.804, "gamma": -177.089, "delta": 81.858, "epsilon": -92.370, "zeta": -123.207, "epsilon_zeta": 30.837, "bb_type": "--", "chi": 143.476, "glyco_bond": "anti", "C5prime_xyz": [ -2.424, 7.226, 3.119 ], "P_xyz": [ -0.482, 8.919, 3.564 ], "form": ".", "ssZp": 4.118, "Dp": 4.613, "splay_angle": 31.631, "splay_distance": 4.790, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": -176.899, "theta": -174.603, "eta_prime": -147.609, "theta_prime": -153.918, "eta_base": -104.995, "theta_base": -143.105, "v0": 2.184, "v1": -23.934, "v2": 35.351, "v3": -35.074, "v4": 20.745, "amplitude": 36.645, "phase_angle": 15.269, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5n", "suiteness": 0.010, "filter_rmsd": 0.047, "frame": { "rmsd": 0.015, "origin": [ 163.441, 264.018, 250.360 ], "x_axis": [ 0.780, 0.618, 0.099 ], "y_axis": [ 0.510, -0.536, -0.673 ], "z_axis": [ -0.363, 0.575, -0.733 ], "quaternion": [ -0.357, 0.873, 0.323, -0.076 ] } }, { "index": 1371, "index_chain": 1371, "chain_name": "2", "nt_resnum": 1534, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1534", "linked_nts": [ "///2/1533", "///2/1535" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,splayed-apart", "alpha": -52.852, "beta": 152.316, "gamma": 70.227, "delta": 146.441, "epsilon": -121.890, "zeta": 90.926, "epsilon_zeta": 147.185, "bb_type": "--", "chi": -141.145, "glyco_bond": "anti", "C5prime_xyz": [ -1.838, 8.786, -0.104 ], "P_xyz": [ 0.728, 8.980, 0.399 ], "form": ".", "ssZp": 1.305, "Dp": 1.389, "splay_angle": 126.045, "splay_distance": 16.805, "splay_ratio": 0.891, "d22": 11.608, "d64": 13.564, "eta": -165.940, "theta": 117.537, "eta_prime": -141.502, "theta_prime": 49.331, "eta_base": -141.088, "theta_base": -3.540, "v0": -22.560, "v1": 36.378, "v2": -35.575, "v3": 23.515, "v4": -0.808, "amplitude": 37.311, "phase_angle": 162.455, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 159.135, 266.106, 250.148 ], "x_axis": [ 0.913, 0.349, -0.213 ], "y_axis": [ 0.099, -0.694, -0.713 ], "z_axis": [ -0.397, 0.629, -0.668 ], "quaternion": [ -0.371, 0.905, 0.124, -0.169 ] } }, { "index": 1372, "index_chain": 1372, "chain_name": "2", "nt_resnum": 1535, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1535", "linked_nts": [ "///2/1534", "///2/1536" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,junction-loop,phosphate,splayed-apart", "alpha": 84.738, "beta": -157.550, "gamma": 57.804, "delta": 148.716, "epsilon": -84.788, "zeta": -78.445, "epsilon_zeta": -6.342, "bb_type": "--", "chi": 179.103, "glyco_bond": "--", "C5prime_xyz": [ -2.178, 8.235, 1.933 ], "P_xyz": [ -1.361, 7.687, 4.371 ], "form": ".", "ssZp": 0.061, "Dp": 0.398, "splay_angle": 115.533, "splay_distance": 16.106, "splay_ratio": 0.846, "d22": null, "d64": null, "eta": 38.703, "theta": -44.133, "eta_prime": 53.696, "theta_prime": -59.747, "eta_base": 84.684, "theta_base": -37.308, "v0": -22.131, "v1": 37.367, "v2": -37.468, "v3": 25.660, "v4": -2.414, "amplitude": 38.834, "phase_angle": 164.756, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.455, "filter_rmsd": 0.108, "frame": { "rmsd": 0.008, "origin": [ 156.473, 254.679, 238.117 ], "x_axis": [ -0.786, 0.149, -0.600 ], "y_axis": [ -0.594, 0.090, 0.800 ], "z_axis": [ 0.173, 0.985, 0.018 ], "quaternion": [ 0.284, -0.163, 0.682, 0.655 ] } }, { "index": 1373, "index_chain": 1373, "chain_name": "2", "nt_resnum": 1536, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1536", "linked_nts": [ "///2/1535", "///2/1537" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,splayed-apart", "alpha": -59.068, "beta": 177.889, "gamma": 59.066, "delta": 83.828, "epsilon": -150.374, "zeta": -85.709, "epsilon_zeta": -64.665, "bb_type": "BI", "chi": -173.366, "glyco_bond": "anti", "C5prime_xyz": [ -1.463, 8.557, 1.337 ], "P_xyz": [ 1.063, 8.758, 2.005 ], "form": "A", "ssZp": 4.522, "Dp": 4.566, "splay_angle": 24.840, "splay_distance": 3.768, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 163.924, "theta": -155.598, "eta_prime": -150.420, "theta_prime": -154.748, "eta_base": -123.147, "theta_base": -137.647, "v0": 2.811, "v1": -23.668, "v2": 34.361, "v3": -33.722, "v4": 19.505, "amplitude": 35.443, "phase_angle": 14.195, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.704, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 157.707, 262.576, 252.101 ], "x_axis": [ -0.999, 0.018, -0.034 ], "y_axis": [ 0.008, -0.776, -0.630 ], "z_axis": [ -0.038, -0.630, 0.776 ], "quaternion": [ 0.003, -0.019, -0.334, 0.942 ] } }, { "index": 1374, "index_chain": 1374, "chain_name": "2", "nt_resnum": 1537, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1537", "linked_nts": [ "///2/1536", "///2/1538" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -62.827, "beta": 174.697, "gamma": 48.811, "delta": 82.863, "epsilon": -149.582, "zeta": -77.216, "epsilon_zeta": -72.366, "bb_type": "BI", "chi": -170.369, "glyco_bond": "anti", "C5prime_xyz": [ -1.044, 8.476, 1.182 ], "P_xyz": [ 1.511, 8.484, 1.782 ], "form": "A", "ssZp": 4.623, "Dp": 4.662, "splay_angle": 24.543, "splay_distance": 3.813, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 169.041, "theta": -147.187, "eta_prime": 175.404, "theta_prime": -145.417, "eta_base": -156.806, "theta_base": -127.653, "v0": 5.958, "v1": -26.682, "v2": 36.164, "v3": -33.720, "v4": 17.543, "amplitude": 36.667, "phase_angle": 9.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.819, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 158.508, 261.936, 255.727 ], "x_axis": [ -0.859, -0.308, -0.408 ], "y_axis": [ 0.502, -0.661, -0.558 ], "z_axis": [ -0.098, -0.684, 0.722 ], "quaternion": [ -0.225, -0.140, -0.345, 0.900 ] } }, { "index": 1375, "index_chain": 1375, "chain_name": "2", "nt_resnum": 1538, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1538", "linked_nts": [ "///2/1537", "///2/1539" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -55.968, "beta": 165.435, "gamma": 56.057, "delta": 81.337, "epsilon": -145.897, "zeta": -60.556, "epsilon_zeta": -85.340, "bb_type": "BI", "chi": -172.093, "glyco_bond": "anti", "C5prime_xyz": [ -1.405, 8.650, 1.228 ], "P_xyz": [ 1.167, 8.933, 1.637 ], "form": "A", "ssZp": 4.558, "Dp": 4.612, "splay_angle": 23.619, "splay_distance": 3.896, "splay_ratio": 0.211, "d22": 4.004, "d64": 4.240, "eta": 173.841, "theta": -129.833, "eta_prime": -172.496, "theta_prime": -129.952, "eta_base": -140.156, "theta_base": -97.676, "v0": 1.512, "v1": -23.544, "v2": 35.397, "v3": -35.475, "v4": 21.426, "amplitude": 36.878, "phase_angle": 16.294, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 157.222, 260.999, 259.191 ], "x_axis": [ -0.533, -0.564, -0.631 ], "y_axis": [ 0.842, -0.426, -0.331 ], "z_axis": [ -0.082, -0.707, 0.702 ], "quaternion": [ -0.431, -0.219, -0.318, 0.816 ] } }, { "index": 1376, "index_chain": 1376, "chain_name": "2", "nt_resnum": 1539, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1539", "linked_nts": [ "///2/1538", "///2/1540" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -66.401, "beta": 178.347, "gamma": 51.435, "delta": 78.991, "epsilon": -140.226, "zeta": -110.944, "epsilon_zeta": -29.283, "bb_type": "--", "chi": -160.376, "glyco_bond": "anti", "C5prime_xyz": [ -1.728, 8.831, 0.512 ], "P_xyz": [ 0.722, 9.643, 0.972 ], "form": "A", "ssZp": 4.347, "Dp": 4.599, "splay_angle": 22.468, "splay_distance": 3.673, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 167.150, "theta": -136.024, "eta_prime": -174.841, "theta_prime": -140.837, "eta_base": -124.031, "theta_base": -109.196, "v0": -2.481, "v1": -20.645, "v2": 34.590, "v3": -37.001, "v4": 24.889, "amplitude": 37.394, "phase_angle": 22.330, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.904, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 154.842, 258.219, 260.528 ], "x_axis": [ 0.124, -0.658, -0.742 ], "y_axis": [ 0.984, -0.016, 0.179 ], "z_axis": [ -0.129, -0.753, 0.646 ], "quaternion": [ 0.662, 0.352, 0.231, -0.620 ] } }, { "index": 1377, "index_chain": 1377, "chain_name": "2", "nt_resnum": 1540, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1540", "linked_nts": [ "///2/1539", "///2/1541" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 137.318, "beta": -126.953, "gamma": 171.950, "delta": 81.780, "epsilon": -121.486, "zeta": -88.063, "epsilon_zeta": -33.423, "bb_type": "--", "chi": 173.488, "glyco_bond": "anti", "C5prime_xyz": [ -1.706, 8.296, 2.007 ], "P_xyz": [ 0.317, 9.533, 0.905 ], "form": "A", "ssZp": 4.657, "Dp": 4.689, "splay_angle": 21.314, "splay_distance": 3.402, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 156.097, "theta": -152.886, "eta_prime": 172.832, "theta_prime": -155.067, "eta_base": -139.440, "theta_base": -129.500, "v0": 1.776, "v1": -23.520, "v2": 35.075, "v3": -35.057, "v4": 20.996, "amplitude": 36.471, "phase_angle": 15.904, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.026, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 153.772, 254.782, 261.262 ], "x_axis": [ 0.651, -0.258, -0.714 ], "y_axis": [ 0.756, 0.308, 0.578 ], "z_axis": [ 0.071, -0.916, 0.396 ], "quaternion": [ 0.767, 0.487, 0.256, -0.331 ] } }, { "index": 1378, "index_chain": 1378, "chain_name": "2", "nt_resnum": 1541, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1541", "linked_nts": [ "///2/1540", "///2/1542" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -64.435, "beta": 153.185, "gamma": 62.034, "delta": 79.683, "epsilon": -148.283, "zeta": -73.879, "epsilon_zeta": -74.404, "bb_type": "BI", "chi": -171.649, "glyco_bond": "anti", "C5prime_xyz": [ -1.836, 8.676, 1.168 ], "P_xyz": [ 0.707, 9.267, 1.092 ], "form": "A", "ssZp": 4.560, "Dp": 4.596, "splay_angle": 24.329, "splay_distance": 3.785, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 159.248, "theta": -142.905, "eta_prime": 176.987, "theta_prime": -144.125, "eta_base": -138.829, "theta_base": -105.071, "v0": -0.435, "v1": -22.649, "v2": 35.796, "v3": -37.071, "v4": 23.628, "amplitude": 37.917, "phase_angle": 19.256, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.445, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 153.068, 251.475, 260.891 ], "x_axis": [ 0.963, -0.048, -0.265 ], "y_axis": [ 0.266, 0.326, 0.907 ], "z_axis": [ 0.043, -0.944, 0.327 ], "quaternion": [ 0.809, 0.572, 0.095, -0.097 ] } }, { "index": 1379, "index_chain": 1379, "chain_name": "2", "nt_resnum": 1542, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1542", "linked_nts": [ "///2/1541", "///2/1543" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -57.827, "beta": 165.914, "gamma": 56.270, "delta": 81.040, "epsilon": -115.344, "zeta": -85.289, "epsilon_zeta": -30.055, "bb_type": "--", "chi": -162.280, "glyco_bond": "anti", "C5prime_xyz": [ -1.281, 8.741, 0.668 ], "P_xyz": [ 1.328, 9.030, 0.667 ], "form": ".", "ssZp": 4.315, "Dp": 4.741, "splay_angle": 26.133, "splay_distance": 4.177, "splay_ratio": 0.226, "d22": 4.336, "d64": 3.975, "eta": 178.878, "theta": -129.685, "eta_prime": -168.069, "theta_prime": -125.519, "eta_base": -114.764, "theta_base": -88.365, "v0": 2.731, "v1": -24.663, "v2": 36.039, "v3": -35.478, "v4": 20.654, "amplitude": 37.229, "phase_angle": 14.526, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.926, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 154.644, 248.039, 260.685 ], "x_axis": [ 0.883, 0.058, 0.465 ], "y_axis": [ -0.466, 0.220, 0.857 ], "z_axis": [ -0.052, -0.974, 0.221 ], "quaternion": [ 0.762, 0.601, -0.169, 0.172 ] } }, { "index": 1380, "index_chain": 1380, "chain_name": "2", "nt_resnum": 1543, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1543", "linked_nts": [ "///2/1542", "///2/1544" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -62.834, "beta": 153.944, "gamma": 64.850, "delta": 80.243, "epsilon": -169.473, "zeta": -99.104, "epsilon_zeta": -70.369, "bb_type": "BI", "chi": -148.381, "glyco_bond": "anti", "C5prime_xyz": [ -1.540, 8.786, -0.191 ], "P_xyz": [ 0.893, 9.076, -1.116 ], "form": ".", "ssZp": 4.117, "Dp": 4.466, "splay_angle": 41.358, "splay_distance": 6.607, "splay_ratio": 0.354, "d22": 6.109, "d64": 6.700, "eta": 157.694, "theta": 175.774, "eta_prime": -176.786, "theta_prime": 166.978, "eta_base": -122.002, "theta_base": 148.599, "v0": 1.032, "v1": -23.678, "v2": 36.044, "v3": -36.435, "v4": 22.306, "amplitude": 37.702, "phase_angle": 17.054, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.324, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 156.700, 245.155, 262.899 ], "x_axis": [ 0.359, 0.371, 0.856 ], "y_axis": [ -0.895, -0.121, 0.428 ], "z_axis": [ 0.263, -0.921, 0.289 ], "quaternion": [ 0.618, 0.546, -0.240, 0.512 ] } }, { "index": 1381, "index_chain": 1381, "chain_name": "2", "nt_resnum": 1544, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1544", "linked_nts": [ "///2/1543", "///2/1545" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,internal-loop", "alpha": -72.628, "beta": 175.476, "gamma": 50.592, "delta": 79.491, "epsilon": -172.771, "zeta": -80.387, "epsilon_zeta": -92.384, "bb_type": "BI", "chi": -154.686, "glyco_bond": "anti", "C5prime_xyz": [ -1.487, 8.871, 0.169 ], "P_xyz": [ 1.041, 9.546, 0.298 ], "form": ".", "ssZp": 4.257, "Dp": 4.420, "splay_angle": 43.787, "splay_distance": 7.467, "splay_ratio": 0.381, "d22": null, "d64": null, "eta": 161.259, "theta": -150.873, "eta_prime": 156.507, "theta_prime": -153.502, "eta_base": 145.161, "theta_base": -151.104, "v0": -0.624, "v1": -22.200, "v2": 35.257, "v3": -36.603, "v4": 23.488, "amplitude": 37.412, "phase_angle": 19.542, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.913, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 156.533, 240.673, 258.048 ], "x_axis": [ 0.395, 0.661, 0.638 ], "y_axis": [ -0.743, -0.179, 0.646 ], "z_axis": [ 0.541, -0.728, 0.420 ], "quaternion": [ 0.640, 0.537, -0.038, 0.549 ] } }, { "index": 1382, "index_chain": 1382, "chain_name": "2", "nt_resnum": 1545, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1545", "linked_nts": [ "///2/1544", "///2/1546" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop,phosphate", "alpha": -175.185, "beta": -168.756, "gamma": -173.934, "delta": 83.856, "epsilon": -117.778, "zeta": -122.992, "epsilon_zeta": 5.214, "bb_type": "--", "chi": -157.427, "glyco_bond": "anti", "C5prime_xyz": [ -1.532, 8.783, 0.389 ], "P_xyz": [ -0.465, 10.548, -1.237 ], "form": ".", "ssZp": 4.037, "Dp": 4.564, "splay_angle": 23.492, "splay_distance": 3.850, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": -151.284, "theta": 167.642, "eta_prime": -153.772, "theta_prime": -178.387, "eta_base": -151.395, "theta_base": -136.132, "v0": -0.784, "v1": -20.237, "v2": 32.324, "v3": -33.694, "v4": 21.774, "amplitude": 34.377, "phase_angle": 19.901, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.270, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 161.644, 235.238, 257.746 ], "x_axis": [ 0.443, 0.332, 0.833 ], "y_axis": [ -0.834, -0.187, 0.519 ], "z_axis": [ 0.328, -0.925, 0.194 ], "quaternion": [ 0.602, 0.599, -0.210, 0.484 ] } }, { "index": 1383, "index_chain": 1383, "chain_name": "2", "nt_resnum": 1546, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1546", "linked_nts": [ "///2/1545", "///2/1547" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -33.463, "beta": 127.506, "gamma": 45.537, "delta": 82.620, "epsilon": -169.183, "zeta": -84.553, "epsilon_zeta": -84.631, "bb_type": "BI", "chi": -145.056, "glyco_bond": "anti", "C5prime_xyz": [ -1.193, 8.742, -0.342 ], "P_xyz": [ 1.297, 8.198, -0.947 ], "form": ".", "ssZp": 3.984, "Dp": 4.462, "splay_angle": 27.865, "splay_distance": 4.789, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": 161.696, "theta": -128.699, "eta_prime": -179.865, "theta_prime": -147.241, "eta_base": -133.490, "theta_base": -156.914, "v0": 3.569, "v1": -24.493, "v2": 34.995, "v3": -33.915, "v4": 19.175, "amplitude": 35.928, "phase_angle": 13.082, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.172, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 162.606, 231.834, 259.267 ], "x_axis": [ -0.116, 0.200, 0.973 ], "y_axis": [ -0.878, -0.478, -0.006 ], "z_axis": [ 0.464, -0.855, 0.231 ], "quaternion": [ 0.399, 0.532, -0.319, 0.676 ] } }, { "index": 1384, "index_chain": 1384, "chain_name": "2", "nt_resnum": 1547, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1547", "linked_nts": [ "///2/1546", "///2/1548" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 162.949, "beta": -160.196, "gamma": 173.104, "delta": 80.595, "epsilon": -148.963, "zeta": 9.339, "epsilon_zeta": 201.699, "bb_type": "--", "chi": -162.662, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.744, 0.687 ], "P_xyz": [ 0.111, 10.196, -0.958 ], "form": ".", "ssZp": 4.475, "Dp": 4.625, "splay_angle": 50.871, "splay_distance": 7.343, "splay_ratio": 0.431, "d22": null, "d64": null, "eta": 168.091, "theta": -107.530, "eta_prime": 177.527, "theta_prime": -123.662, "eta_base": -170.865, "theta_base": -62.100, "v0": 2.349, "v1": -24.479, "v2": 36.128, "v3": -35.768, "v4": 21.058, "amplitude": 37.419, "phase_angle": 15.098, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.739, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 166.589, 229.173, 259.279 ], "x_axis": [ -0.280, 0.158, 0.947 ], "y_axis": [ -0.808, -0.571, -0.144 ], "z_axis": [ 0.518, -0.806, 0.287 ], "quaternion": [ 0.330, 0.501, -0.325, 0.731 ] } }, { "index": 1385, "index_chain": 1385, "chain_name": "2", "nt_resnum": 1548, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1548", "linked_nts": [ "///2/1547", "///2/1549" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -158.176, "beta": 100.137, "gamma": 169.193, "delta": 81.865, "epsilon": -123.770, "zeta": -73.483, "epsilon_zeta": -50.287, "bb_type": "--", "chi": 7.202, "glyco_bond": "syn", "C5prime_xyz": [ -5.252, 3.662, -1.310 ], "P_xyz": [ -7.448, 3.365, 0.089 ], "form": ".", "ssZp": -4.619, "Dp": 4.689, "splay_angle": 34.677, "splay_distance": 5.375, "splay_ratio": 0.302, "d22": null, "d64": null, "eta": 167.013, "theta": 176.397, "eta_prime": -174.846, "theta_prime": -165.545, "eta_base": -82.904, "theta_base": 173.522, "v0": 2.146, "v1": -23.685, "v2": 35.024, "v3": -34.787, "v4": 20.587, "amplitude": 36.316, "phase_angle": 15.327, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 162.554, 225.076, 263.845 ], "x_axis": [ 0.197, 0.654, 0.730 ], "y_axis": [ 0.864, 0.236, -0.444 ], "z_axis": [ -0.463, 0.718, -0.519 ], "quaternion": [ -0.478, 0.608, 0.624, 0.110 ] } }, { "index": 1386, "index_chain": 1386, "chain_name": "2", "nt_resnum": 1549, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1549", "linked_nts": [ "///2/1548", "///2/1550" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -57.562, "beta": 168.113, "gamma": 46.046, "delta": 80.233, "epsilon": -147.620, "zeta": -87.670, "epsilon_zeta": -59.950, "bb_type": "BI", "chi": -157.354, "glyco_bond": "anti", "C5prime_xyz": [ -1.458, 8.763, 0.360 ], "P_xyz": [ 1.106, 9.268, 0.533 ], "form": "A", "ssZp": 4.352, "Dp": 4.638, "splay_angle": 27.345, "splay_distance": 4.277, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 158.175, "theta": -156.644, "eta_prime": 179.881, "theta_prime": -153.829, "eta_base": 166.944, "theta_base": -130.353, "v0": 1.341, "v1": -23.733, "v2": 35.867, "v3": -36.072, "v4": 21.894, "amplitude": 37.425, "phase_angle": 16.593, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.614, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 166.157, 225.840, 267.760 ], "x_axis": [ -0.893, -0.416, -0.173 ], "y_axis": [ 0.382, -0.494, -0.781 ], "z_axis": [ 0.239, -0.763, 0.600 ], "quaternion": [ -0.231, 0.019, -0.447, 0.864 ] } }, { "index": 1387, "index_chain": 1387, "chain_name": "2", "nt_resnum": 1550, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1550", "linked_nts": [ "///2/1549", "///2/1551" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -51.943, "beta": 155.905, "gamma": 59.455, "delta": 80.607, "epsilon": -134.027, "zeta": 165.630, "epsilon_zeta": 60.343, "bb_type": "BII", "chi": -162.533, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.740, 0.670 ], "P_xyz": [ 1.273, 8.985, 0.297 ], "form": ".", "ssZp": 4.472, "Dp": 4.735, "splay_angle": 47.743, "splay_distance": 6.726, "splay_ratio": 0.422, "d22": null, "d64": null, "eta": 177.374, "theta": 149.835, "eta_prime": -171.935, "theta_prime": 167.698, "eta_base": -139.670, "theta_base": -172.933, "v0": 3.176, "v1": -25.450, "v2": 36.802, "v3": -35.949, "v4": 20.698, "amplitude": 37.912, "phase_angle": 13.895, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.645, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 166.348, 223.083, 271.024 ], "x_axis": [ -0.609, -0.602, -0.516 ], "y_axis": [ 0.754, -0.238, -0.613 ], "z_axis": [ 0.247, -0.762, 0.599 ], "quaternion": [ -0.433, -0.086, -0.440, 0.782 ] } }, { "index": 1388, "index_chain": 1388, "chain_name": "2", "nt_resnum": 1551, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1551", "linked_nts": [ "///2/1550", "///2/1552" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,internal-loop,cap-donor,phosphate", "alpha": 128.817, "beta": -96.321, "gamma": -174.432, "delta": 81.602, "epsilon": -157.842, "zeta": 92.166, "epsilon_zeta": 109.992, "bb_type": "--", "chi": -62.118, "glyco_bond": "--", "C5prime_xyz": [ -3.378, 5.883, -3.423 ], "P_xyz": [ -4.552, 3.565, -3.824 ], "form": ".", "ssZp": -1.834, "Dp": 4.591, "splay_angle": 72.240, "splay_distance": 10.150, "splay_ratio": 0.605, "d22": null, "d64": null, "eta": -151.867, "theta": 38.193, "eta_prime": -162.304, "theta_prime": 35.537, "eta_base": -172.020, "theta_base": 43.498, "v0": 2.935, "v1": -24.861, "v2": 36.129, "v3": -35.389, "v4": 20.513, "amplitude": 37.265, "phase_angle": 14.186, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.006, "origin": [ 170.499, 220.960, 275.872 ], "x_axis": [ -0.237, -0.531, 0.814 ], "y_axis": [ 0.965, -0.228, 0.132 ], "z_axis": [ 0.116, 0.816, 0.566 ], "quaternion": [ 0.525, -0.326, -0.332, -0.713 ] } }, { "index": 1389, "index_chain": 1389, "chain_name": "2", "nt_resnum": 1552, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1552", "linked_nts": [ "///2/1551", "///2/1553" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-acceptor,splayed-apart", "alpha": 108.294, "beta": -105.822, "gamma": 154.861, "delta": 146.499, "epsilon": -108.873, "zeta": -44.806, "epsilon_zeta": -64.067, "bb_type": "--", "chi": -81.871, "glyco_bond": "--", "C5prime_xyz": [ -2.459, 7.458, -2.759 ], "P_xyz": [ -0.709, 5.810, -3.805 ], "form": ".", "ssZp": 0.491, "Dp": 1.242, "splay_angle": 112.342, "splay_distance": 16.242, "splay_ratio": 0.832, "d22": null, "d64": null, "eta": 168.806, "theta": -11.046, "eta_prime": -143.432, "theta_prime": -112.412, "eta_base": -125.132, "theta_base": -149.389, "v0": -18.707, "v1": 33.169, "v2": -34.174, "v3": 24.251, "v4": -3.683, "amplitude": 35.048, "phase_angle": 167.176, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 178.746, 222.904, 270.283 ], "x_axis": [ 0.496, 0.719, 0.488 ], "y_axis": [ 0.631, -0.684, 0.367 ], "z_axis": [ 0.597, 0.126, -0.792 ], "quaternion": [ 0.070, 0.862, 0.391, 0.315 ] } }, { "index": 1390, "index_chain": 1390, "chain_name": "2", "nt_resnum": 1553, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1553", "linked_nts": [ "///2/1552", "///2/1554" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 152.038, "beta": 149.525, "gamma": 42.757, "delta": 147.283, "epsilon": -155.416, "zeta": -115.476, "epsilon_zeta": -39.940, "bb_type": "BI", "chi": -114.996, "glyco_bond": "anti", "C5prime_xyz": [ -1.969, 8.486, -1.459 ], "P_xyz": [ 0.579, 8.987, -1.032 ], "form": ".", "ssZp": 1.957, "Dp": 1.952, "splay_angle": 25.417, "splay_distance": 4.300, "splay_ratio": 0.220, "d22": 5.302, "d64": 4.742, "eta": -35.329, "theta": -124.191, "eta_prime": 58.231, "theta_prime": -154.604, "eta_base": 92.009, "theta_base": -145.497, "v0": -21.618, "v1": 36.124, "v2": -36.024, "v3": 24.463, "v4": -1.972, "amplitude": 37.433, "phase_angle": 164.232, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2z", "suiteness": 0.010, "filter_rmsd": 0.062, "frame": { "rmsd": 0.001, "origin": [ 188.182, 211.198, 264.141 ], "x_axis": [ -0.731, 0.201, -0.652 ], "y_axis": [ -0.589, 0.295, 0.752 ], "z_axis": [ 0.343, 0.934, -0.097 ], "quaternion": [ 0.341, -0.133, 0.729, 0.579 ] } }, { "index": 1391, "index_chain": 1391, "chain_name": "2", "nt_resnum": 1554, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1554", "linked_nts": [ "///2/1553", "///2/1555" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -113.295, "beta": -173.723, "gamma": 47.847, "delta": 81.242, "epsilon": -159.246, "zeta": 62.145, "epsilon_zeta": 138.609, "bb_type": "--", "chi": -135.028, "glyco_bond": "anti", "C5prime_xyz": [ -1.706, 8.793, -0.993 ], "P_xyz": [ 0.729, 9.749, -1.167 ], "form": ".", "ssZp": 3.481, "Dp": 4.421, "splay_angle": 36.437, "splay_distance": 5.847, "splay_ratio": 0.316, "d22": 4.366, "d64": 4.466, "eta": 134.862, "theta": -17.019, "eta_prime": 138.608, "theta_prime": -64.046, "eta_base": 164.491, "theta_base": -92.437, "v0": -3.527, "v1": -18.534, "v2": 32.141, "v3": -35.104, "v4": 24.416, "amplitude": 35.245, "phase_angle": 24.227, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 191.565, 213.850, 264.049 ], "x_axis": [ -0.967, 0.000, -0.255 ], "y_axis": [ -0.252, 0.153, 0.956 ], "z_axis": [ 0.039, 0.988, -0.148 ], "quaternion": [ 0.098, -0.083, 0.753, 0.646 ] } }, { "index": 1392, "index_chain": 1392, "chain_name": "2", "nt_resnum": 1555, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1555", "linked_nts": [ "///2/1554", "///2/1556" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": 146.606, "beta": 144.425, "gamma": 61.859, "delta": 145.818, "epsilon": -94.650, "zeta": 67.505, "epsilon_zeta": 197.846, "bb_type": "--", "chi": -146.244, "glyco_bond": "anti", "C5prime_xyz": [ -1.841, 8.733, 0.177 ], "P_xyz": [ 0.663, 8.761, 0.951 ], "form": ".", "ssZp": 0.723, "Dp": 0.778, "splay_angle": 56.297, "splay_distance": 8.635, "splay_ratio": 0.485, "d22": null, "d64": null, "eta": 50.541, "theta": 101.390, "eta_prime": 123.294, "theta_prime": 70.759, "eta_base": 136.401, "theta_base": 44.386, "v0": -21.691, "v1": 35.582, "v2": -35.153, "v3": 23.569, "v4": -1.404, "amplitude": 36.686, "phase_angle": 163.377, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.598, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 187.721, 218.209, 264.694 ], "x_axis": [ 0.913, -0.089, -0.399 ], "y_axis": [ 0.409, 0.160, 0.899 ], "z_axis": [ -0.016, -0.983, 0.183 ], "quaternion": [ 0.751, 0.626, 0.127, -0.166 ] } }, { "index": 1393, "index_chain": 1393, "chain_name": "2", "nt_resnum": 1556, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1556", "linked_nts": [ "///2/1555", "///2/1557" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-pair-contact,internal-loop", "alpha": 179.215, "beta": -136.380, "gamma": 49.438, "delta": 142.526, "epsilon": -131.332, "zeta": -88.848, "epsilon_zeta": -42.484, "bb_type": "--", "chi": 117.927, "glyco_bond": "--", "C5prime_xyz": [ -3.772, 6.246, 3.101 ], "P_xyz": [ -4.938, 4.200, 4.253 ], "form": ".", "ssZp": -0.672, "Dp": 1.611, "splay_angle": 48.074, "splay_distance": 7.799, "splay_ratio": 0.408, "d22": null, "d64": null, "eta": 120.578, "theta": -97.803, "eta_prime": 126.792, "theta_prime": -101.830, "eta_base": 122.808, "theta_base": -80.506, "v0": -23.464, "v1": 35.663, "v2": -33.645, "v3": 20.972, "v4": 1.388, "amplitude": 36.015, "phase_angle": 159.099, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.047, "frame": { "rmsd": 0.017, "origin": [ 191.147, 223.077, 270.949 ], "x_axis": [ 0.963, 0.055, 0.263 ], "y_axis": [ -0.269, 0.166, 0.949 ], "z_axis": [ 0.009, -0.985, 0.174 ], "quaternion": [ 0.759, 0.637, -0.084, 0.107 ] } }, { "index": 1394, "index_chain": 1394, "chain_name": "2", "nt_resnum": 1557, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1557", "linked_nts": [ "///2/1556", "///2/1558" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": -69.496, "beta": 167.381, "gamma": 53.026, "delta": 79.430, "epsilon": -110.921, "zeta": -107.196, "epsilon_zeta": -3.725, "bb_type": "--", "chi": -155.884, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.839, 0.260 ], "P_xyz": [ 1.149, 9.327, 0.174 ], "form": ".", "ssZp": 3.996, "Dp": 4.722, "splay_angle": 106.699, "splay_distance": 14.649, "splay_ratio": 0.803, "d22": 7.615, "d64": 10.077, "eta": 168.536, "theta": -103.465, "eta_prime": -162.745, "theta_prime": -96.336, "eta_base": -132.587, "theta_base": -80.470, "v0": 0.678, "v1": -23.418, "v2": 36.007, "v3": -36.614, "v4": 22.640, "amplitude": 37.776, "phase_angle": 17.603, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.323, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 184.508, 222.611, 266.883 ], "x_axis": [ -0.197, -0.935, 0.295 ], "y_axis": [ -0.127, 0.322, 0.938 ], "z_axis": [ -0.972, 0.148, -0.183 ], "quaternion": [ -0.485, -0.407, 0.652, 0.416 ] } }, { "index": 1395, "index_chain": 1395, "chain_name": "2", "nt_resnum": 1558, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1558", "linked_nts": [ "///2/1557", "///2/1559" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,multiplet,internal-loop,splayed-apart", "alpha": 57.457, "beta": 129.245, "gamma": 37.674, "delta": 82.673, "epsilon": -138.052, "zeta": -86.336, "epsilon_zeta": -51.715, "bb_type": "BI", "chi": -163.096, "glyco_bond": "anti", "C5prime_xyz": [ -1.489, 8.806, 0.705 ], "P_xyz": [ 1.116, 8.613, 0.974 ], "form": ".", "ssZp": 4.345, "Dp": 4.556, "splay_angle": 17.648, "splay_distance": 2.832, "splay_ratio": 0.153, "d22": 4.753, "d64": 3.886, "eta": -136.568, "theta": -138.926, "eta_prime": -114.014, "theta_prime": -141.299, "eta_base": -96.561, "theta_base": -133.740, "v0": -0.887, "v1": -20.491, "v2": 32.801, "v3": -34.285, "v4": 22.188, "amplitude": 34.920, "phase_angle": 20.063, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.241, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 173.138, 223.337, 276.089 ], "x_axis": [ 0.432, 0.136, 0.892 ], "y_axis": [ 0.790, 0.420, -0.446 ], "z_axis": [ -0.435, 0.898, 0.074 ], "quaternion": [ 0.694, -0.484, -0.478, -0.236 ] } }, { "index": 1396, "index_chain": 1396, "chain_name": "2", "nt_resnum": 1559, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1559", "linked_nts": [ "///2/1558", "///2/1560" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet", "alpha": -67.505, "beta": 175.228, "gamma": 45.034, "delta": 83.850, "epsilon": -141.418, "zeta": -92.874, "epsilon_zeta": -48.544, "bb_type": "BI", "chi": -140.443, "glyco_bond": "anti", "C5prime_xyz": [ -1.219, 8.724, -0.614 ], "P_xyz": [ 1.382, 9.085, -0.613 ], "form": ".", "ssZp": 3.605, "Dp": 4.605, "splay_angle": 30.788, "splay_distance": 5.136, "splay_ratio": 0.266, "d22": 4.388, "d64": 4.861, "eta": 162.299, "theta": -112.878, "eta_prime": 170.095, "theta_prime": -111.656, "eta_base": -169.039, "theta_base": -76.158, "v0": 2.523, "v1": -22.960, "v2": 33.545, "v3": -33.019, "v4": 19.272, "amplitude": 34.657, "phase_angle": 14.556, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.735, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 171.069, 225.220, 276.530 ], "x_axis": [ 0.861, 0.112, 0.497 ], "y_axis": [ 0.359, 0.557, -0.749 ], "z_axis": [ -0.361, 0.823, 0.439 ], "quaternion": [ 0.845, -0.465, -0.254, -0.073 ] } }, { "index": 1397, "index_chain": 1397, "chain_name": "2", "nt_resnum": 1560, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1560", "linked_nts": [ "///2/1559", "///2/1561" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,canonical,non-canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": 133.467, "beta": -117.282, "gamma": -173.174, "delta": 81.105, "epsilon": -100.168, "zeta": -166.108, "epsilon_zeta": 65.940, "bb_type": "BII", "chi": -156.164, "glyco_bond": "anti", "C5prime_xyz": [ -1.430, 8.756, 0.286 ], "P_xyz": [ -0.509, 9.495, -2.053 ], "form": ".", "ssZp": 3.870, "Dp": 4.706, "splay_angle": 52.008, "splay_distance": 7.966, "splay_ratio": 0.443, "d22": null, "d64": null, "eta": -179.762, "theta": 130.687, "eta_prime": -155.299, "theta_prime": 142.796, "eta_base": -103.279, "theta_base": 154.072, "v0": 1.581, "v1": -23.767, "v2": 35.685, "v3": -35.755, "v4": 21.576, "amplitude": 37.167, "phase_angle": 16.236, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.084, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 174.132, 228.640, 278.832 ], "x_axis": [ 0.884, 0.467, -0.033 ], "y_axis": [ -0.345, 0.601, -0.721 ], "z_axis": [ -0.317, 0.649, 0.692 ], "quaternion": [ 0.891, -0.384, -0.080, 0.228 ] } }, { "index": 1398, "index_chain": 1398, "chain_name": "2", "nt_resnum": 1561, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1561", "linked_nts": [ "///2/1560", "///2/1562" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -59.787, "beta": 133.273, "gamma": 40.717, "delta": 82.258, "epsilon": -134.015, "zeta": -71.454, "epsilon_zeta": -62.560, "bb_type": "BI", "chi": -165.067, "glyco_bond": "anti", "C5prime_xyz": [ -1.206, 8.596, 0.853 ], "P_xyz": [ 1.392, 8.240, 0.809 ], "form": ".", "ssZp": 4.518, "Dp": 4.721, "splay_angle": 29.634, "splay_distance": 4.638, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 174.339, "theta": -120.565, "eta_prime": 167.823, "theta_prime": -120.379, "eta_base": 164.801, "theta_base": -85.074, "v0": 4.547, "v1": -25.789, "v2": 36.102, "v3": -34.481, "v4": 18.892, "amplitude": 36.870, "phase_angle": 11.713, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.084, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 167.377, 230.661, 282.540 ], "x_axis": [ 0.995, 0.047, -0.089 ], "y_axis": [ -0.101, 0.450, -0.887 ], "z_axis": [ -0.002, 0.892, 0.452 ], "quaternion": [ 0.851, -0.523, 0.026, 0.044 ] } }, { "index": 1399, "index_chain": 1399, "chain_name": "2", "nt_resnum": 1562, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1562", "linked_nts": [ "///2/1561", "///2/1563" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -53.487, "beta": 161.118, "gamma": 57.991, "delta": 80.953, "epsilon": -104.335, "zeta": -98.406, "epsilon_zeta": -5.929, "bb_type": "--", "chi": -157.513, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.803, 0.373 ], "P_xyz": [ 1.248, 9.113, 0.098 ], "form": ".", "ssZp": 3.981, "Dp": 4.705, "splay_angle": 38.538, "splay_distance": 6.183, "splay_ratio": 0.331, "d22": null, "d64": null, "eta": -178.866, "theta": -132.172, "eta_prime": -159.603, "theta_prime": -126.745, "eta_base": -105.263, "theta_base": -98.661, "v0": 1.415, "v1": -23.540, "v2": 35.478, "v3": -35.655, "v4": 21.617, "amplitude": 36.999, "phase_angle": 16.487, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.769, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 170.426, 233.947, 283.730 ], "x_axis": [ 0.602, 0.366, -0.710 ], "y_axis": [ -0.795, 0.363, -0.487 ], "z_axis": [ 0.079, 0.857, 0.509 ], "quaternion": [ 0.786, -0.427, 0.251, 0.369 ] } }, { "index": 1400, "index_chain": 1400, "chain_name": "2", "nt_resnum": 1563, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1563", "linked_nts": [ "///2/1562", "///2/1564" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -60.046, "beta": 162.852, "gamma": 50.668, "delta": 81.704, "epsilon": -168.115, "zeta": -75.240, "epsilon_zeta": -92.876, "bb_type": "BI", "chi": -162.744, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.705, 0.700 ], "P_xyz": [ 1.243, 8.983, 0.805 ], "form": ".", "ssZp": 4.423, "Dp": 4.494, "splay_angle": 22.312, "splay_distance": 4.078, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 157.259, "theta": -128.804, "eta_prime": 175.133, "theta_prime": -141.415, "eta_base": -144.066, "theta_base": -136.591, "v0": 3.441, "v1": -25.111, "v2": 36.046, "v3": -35.069, "v4": 19.952, "amplitude": 37.058, "phase_angle": 13.420, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.098, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 171.756, 239.985, 283.699 ], "x_axis": [ -0.085, -0.223, -0.971 ], "y_axis": [ -0.988, -0.104, 0.111 ], "z_axis": [ -0.125, 0.969, -0.212 ], "quaternion": [ -0.387, 0.555, -0.546, -0.494 ] } }, { "index": 1401, "index_chain": 1401, "chain_name": "2", "nt_resnum": 1564, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1564", "linked_nts": [ "///2/1563", "///2/1565" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate", "alpha": 153.331, "beta": -161.099, "gamma": -176.193, "delta": 81.318, "epsilon": -131.675, "zeta": -75.080, "epsilon_zeta": -56.595, "bb_type": "BI", "chi": -176.118, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.550, 1.471 ], "P_xyz": [ 0.190, 10.425, 0.450 ], "form": "A", "ssZp": 4.647, "Dp": 4.690, "splay_angle": 22.482, "splay_distance": 3.561, "splay_ratio": 0.197, "d22": 4.371, "d64": 3.910, "eta": 172.532, "theta": -163.086, "eta_prime": -176.942, "theta_prime": -157.316, "eta_base": -151.914, "theta_base": -120.202, "v0": 2.292, "v1": -24.078, "v2": 35.540, "v3": -35.184, "v4": 20.726, "amplitude": 36.813, "phase_angle": 15.113, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.924, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 174.282, 242.942, 282.472 ], "x_axis": [ -0.437, -0.204, -0.876 ], "y_axis": [ -0.899, 0.092, 0.428 ], "z_axis": [ -0.007, 0.975, -0.223 ], "quaternion": [ 0.328, -0.417, 0.662, 0.530 ] } }, { "index": 1402, "index_chain": 1402, "chain_name": "2", "nt_resnum": 1565, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1565", "linked_nts": [ "///2/1564", "///2/1566" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -68.046, "beta": -179.113, "gamma": 43.510, "delta": 80.072, "epsilon": -122.127, "zeta": -81.995, "epsilon_zeta": -40.133, "bb_type": "--", "chi": -157.281, "glyco_bond": "anti", "C5prime_xyz": [ -1.191, 8.739, 0.371 ], "P_xyz": [ 1.361, 9.157, 0.802 ], "form": "A", "ssZp": 4.222, "Dp": 4.780, "splay_angle": 23.582, "splay_distance": 3.737, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 162.362, "theta": -136.369, "eta_prime": 173.964, "theta_prime": -133.373, "eta_base": -141.741, "theta_base": -97.131, "v0": 4.049, "v1": -26.237, "v2": 37.268, "v3": -35.963, "v4": 20.098, "amplitude": 38.198, "phase_angle": 12.665, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.721, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 174.625, 245.536, 280.056 ], "x_axis": [ -0.903, -0.314, -0.295 ], "y_axis": [ -0.393, 0.321, 0.862 ], "z_axis": [ -0.176, 0.894, -0.413 ], "quaternion": [ 0.037, -0.218, 0.812, 0.541 ] } }, { "index": 1403, "index_chain": 1403, "chain_name": "2", "nt_resnum": 1566, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1566", "linked_nts": [ "///2/1565", "///2/1567" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -74.292, "beta": 161.803, "gamma": 56.953, "delta": 78.993, "epsilon": -132.730, "zeta": -102.064, "epsilon_zeta": -30.666, "bb_type": "--", "chi": -170.997, "glyco_bond": "anti", "C5prime_xyz": [ -1.352, 8.600, 1.142 ], "P_xyz": [ 1.245, 8.946, 1.081 ], "form": ".", "ssZp": 4.690, "Dp": 4.782, "splay_angle": 93.481, "splay_distance": 11.427, "splay_ratio": 0.732, "d22": null, "d64": null, "eta": 151.616, "theta": -132.955, "eta_prime": 166.442, "theta_prime": -170.744, "eta_base": -143.376, "theta_base": 114.750, "v0": 4.563, "v1": -27.323, "v2": 38.488, "v3": -36.869, "v4": 20.356, "amplitude": 39.358, "phase_angle": 12.074, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.560, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 172.178, 247.557, 278.084 ], "x_axis": [ -0.664, -0.520, 0.537 ], "y_axis": [ 0.227, 0.543, 0.808 ], "z_axis": [ -0.712, 0.659, -0.243 ], "quaternion": [ -0.399, -0.094, 0.783, 0.469 ] } }, { "index": 1404, "index_chain": 1404, "chain_name": "2", "nt_resnum": 1567, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1567", "linked_nts": [ "///2/1566", "///2/1568" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,syn,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 73.649, "beta": 174.607, "gamma": 157.908, "delta": 82.403, "epsilon": -112.904, "zeta": -71.102, "epsilon_zeta": -41.802, "bb_type": "--", "chi": -28.872, "glyco_bond": "syn", "C5prime_xyz": [ -4.358, 4.506, -2.881 ], "P_xyz": [ -5.773, 2.318, -3.240 ], "form": ".", "ssZp": -4.455, "Dp": 4.770, "splay_angle": 27.567, "splay_distance": 4.360, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 50.061, "theta": -141.224, "eta_prime": 55.830, "theta_prime": -134.858, "eta_base": 29.407, "theta_base": -149.801, "v0": 3.664, "v1": -25.062, "v2": 35.694, "v3": -34.565, "v4": 19.530, "amplitude": 36.633, "phase_angle": 13.004, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 178.150, 257.296, 277.860 ], "x_axis": [ 0.774, -0.348, -0.530 ], "y_axis": [ -0.633, -0.372, -0.679 ], "z_axis": [ 0.039, 0.860, -0.508 ], "quaternion": [ -0.473, 0.815, -0.301, -0.151 ] } }, { "index": 1405, "index_chain": 1405, "chain_name": "2", "nt_resnum": 1568, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1568", "linked_nts": [ "///2/1567", "///2/1569" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,ribose-zipper,cap-donor,phosphate", "alpha": -68.104, "beta": 161.493, "gamma": 57.900, "delta": 82.772, "epsilon": -111.591, "zeta": -109.771, "epsilon_zeta": -1.820, "bb_type": "--", "chi": -147.442, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.789, -0.229 ], "P_xyz": [ 1.232, 8.987, -0.746 ], "form": ".", "ssZp": 3.595, "Dp": 4.696, "splay_angle": 26.682, "splay_distance": 4.374, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 159.784, "theta": -159.663, "eta_prime": -175.596, "theta_prime": -158.734, "eta_base": -179.405, "theta_base": -144.715, "v0": 1.789, "v1": -23.195, "v2": 34.555, "v3": -34.454, "v4": 20.624, "amplitude": 35.912, "phase_angle": 15.801, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.362, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 179.933, 253.906, 275.777 ], "x_axis": [ -0.110, 0.105, 0.988 ], "y_axis": [ -0.932, -0.357, -0.065 ], "z_axis": [ 0.346, -0.928, 0.137 ], "quaternion": [ 0.409, 0.527, -0.392, 0.633 ] } }, { "index": 1406, "index_chain": 1406, "chain_name": "2", "nt_resnum": 1569, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1569", "linked_nts": [ "///2/1568", "///2/1570" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate", "alpha": -72.137, "beta": 109.231, "gamma": 93.672, "delta": 84.310, "epsilon": -132.793, "zeta": -49.198, "epsilon_zeta": -83.596, "bb_type": "BI", "chi": -163.612, "glyco_bond": "anti", "C5prime_xyz": [ -1.250, 8.621, 0.760 ], "P_xyz": [ 0.497, 8.672, -1.197 ], "form": ".", "ssZp": 4.457, "Dp": 4.688, "splay_angle": 54.202, "splay_distance": 8.486, "splay_ratio": 0.456, "d22": null, "d64": null, "eta": 164.226, "theta": -72.738, "eta_prime": -179.241, "theta_prime": -87.255, "eta_base": -154.633, "theta_base": -48.045, "v0": 3.963, "v1": -24.462, "v2": 34.521, "v3": -33.207, "v4": 18.486, "amplitude": 35.339, "phase_angle": 12.353, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.010, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 181.269, 249.744, 275.937 ], "x_axis": [ -0.338, 0.026, 0.941 ], "y_axis": [ -0.858, -0.420, -0.297 ], "z_axis": [ 0.387, -0.907, 0.164 ], "quaternion": [ 0.319, 0.479, -0.434, 0.693 ] } }, { "index": 1407, "index_chain": 1407, "chain_name": "2", "nt_resnum": 1570, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1570", "linked_nts": [ "///2/1569", "///2/1571" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 144.326, "beta": -143.367, "gamma": 162.600, "delta": 80.528, "epsilon": -112.828, "zeta": -104.958, "epsilon_zeta": -7.870, "bb_type": "--", "chi": -176.527, "glyco_bond": "anti", "C5prime_xyz": [ -1.196, 8.428, 1.491 ], "P_xyz": [ 0.766, 9.508, 0.140 ], "form": "A", "ssZp": 4.731, "Dp": 4.828, "splay_angle": 24.273, "splay_distance": 3.708, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 143.412, "theta": -162.269, "eta_prime": -170.973, "theta_prime": -160.829, "eta_base": -87.888, "theta_base": -142.424, "v0": 6.156, "v1": -27.857, "v2": 37.843, "v3": -35.324, "v4": 18.404, "amplitude": 38.381, "phase_angle": 9.607, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.224, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 174.533, 246.471, 279.928 ], "x_axis": [ -0.909, -0.282, -0.305 ], "y_axis": [ 0.398, -0.378, -0.836 ], "z_axis": [ 0.120, -0.882, 0.456 ], "quaternion": [ -0.205, -0.056, -0.518, 0.828 ] } }, { "index": 1408, "index_chain": 1408, "chain_name": "2", "nt_resnum": 1571, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1571", "linked_nts": [ "///2/1570", "///2/1572" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -59.948, "beta": 157.386, "gamma": 46.883, "delta": 82.657, "epsilon": -120.531, "zeta": -120.790, "epsilon_zeta": 0.259, "bb_type": "--", "chi": -178.384, "glyco_bond": "anti", "C5prime_xyz": [ -1.470, 8.477, 1.588 ], "P_xyz": [ 1.073, 8.527, 2.231 ], "form": ".", "ssZp": 4.651, "Dp": 4.707, "splay_angle": 31.736, "splay_distance": 4.950, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": 165.024, "theta": -167.612, "eta_prime": 170.334, "theta_prime": -161.821, "eta_base": -164.491, "theta_base": -167.089, "v0": 2.648, "v1": -23.846, "v2": 34.800, "v3": -34.262, "v4": 19.956, "amplitude": 35.947, "phase_angle": 14.512, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.128, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 174.175, 243.944, 282.618 ], "x_axis": [ -0.502, 0.149, -0.852 ], "y_axis": [ 0.835, -0.173, -0.522 ], "z_axis": [ -0.225, -0.974, -0.038 ], "quaternion": [ -0.268, -0.421, -0.585, 0.640 ] } }, { "index": 1409, "index_chain": 1409, "chain_name": "2", "nt_resnum": 1572, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1572", "linked_nts": [ "///2/1571", "///2/1573" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop", "alpha": -59.920, "beta": 145.197, "gamma": 59.697, "delta": 83.152, "epsilon": 169.575, "zeta": -79.192, "epsilon_zeta": -111.233, "bb_type": "BI", "chi": -166.074, "glyco_bond": "anti", "C5prime_xyz": [ -1.646, 8.821, 0.839 ], "P_xyz": [ 0.962, 9.090, 0.816 ], "form": ".", "ssZp": 3.897, "Dp": 4.026, "splay_angle": 18.033, "splay_distance": 2.749, "splay_ratio": 0.159, "d22": null, "d64": null, "eta": 165.466, "theta": -154.862, "eta_prime": 176.613, "theta_prime": -157.587, "eta_base": 177.836, "theta_base": -150.509, "v0": -3.159, "v1": -18.126, "v2": 31.155, "v3": -33.832, "v4": 23.362, "amplitude": 34.042, "phase_angle": 23.769, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.512, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 173.362, 241.055, 286.554 ], "x_axis": [ -0.308, 0.320, -0.896 ], "y_axis": [ 0.855, -0.319, -0.408 ], "z_axis": [ -0.417, -0.892, -0.176 ], "quaternion": [ -0.222, -0.545, -0.540, 0.602 ] } }, { "index": 1410, "index_chain": 1410, "chain_name": "2", "nt_resnum": 1573, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1573", "linked_nts": [ "///2/1572", "///2/1574" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -131.383, "beta": -121.376, "gamma": 73.158, "delta": 83.628, "epsilon": -163.839, "zeta": -83.914, "epsilon_zeta": -79.924, "bb_type": "BI", "chi": -142.690, "glyco_bond": "anti", "C5prime_xyz": [ -0.983, 8.664, -0.503 ], "P_xyz": [ 1.555, 8.265, 0.066 ], "form": ".", "ssZp": 3.896, "Dp": 4.537, "splay_angle": 32.513, "splay_distance": 5.197, "splay_ratio": 0.280, "d22": null, "d64": null, "eta": 163.071, "theta": -115.384, "eta_prime": 162.794, "theta_prime": -116.205, "eta_base": 179.544, "theta_base": -88.312, "v0": 5.417, "v1": -25.790, "v2": 35.274, "v3": -33.125, "v4": 17.517, "amplitude": 35.835, "phase_angle": 10.150, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 171.982, 239.003, 287.754 ], "x_axis": [ 0.282, 0.163, -0.946 ], "y_axis": [ 0.770, -0.626, 0.121 ], "z_axis": [ -0.572, -0.762, -0.302 ], "quaternion": [ 0.297, 0.743, 0.314, -0.510 ] } }, { "index": 1411, "index_chain": 1411, "chain_name": "2", "nt_resnum": 1574, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1574", "linked_nts": [ "///2/1573", "///2/1575" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,internal-loop", "alpha": 165.140, "beta": -129.482, "gamma": 162.636, "delta": 81.544, "epsilon": -87.533, "zeta": -126.360, "epsilon_zeta": 38.827, "bb_type": "--", "chi": -157.707, "glyco_bond": "anti", "C5prime_xyz": [ -1.269, 8.774, 0.395 ], "P_xyz": [ 0.445, 9.179, -1.543 ], "form": ".", "ssZp": 3.766, "Dp": 4.654, "splay_angle": 49.415, "splay_distance": 8.048, "splay_ratio": 0.418, "d22": null, "d64": null, "eta": -175.199, "theta": -108.175, "eta_prime": -156.523, "theta_prime": -122.447, "eta_base": -113.661, "theta_base": -106.960, "v0": 2.441, "v1": -24.177, "v2": 35.518, "v3": -35.110, "v4": 20.616, "amplitude": 36.756, "phase_angle": 14.911, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.269, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 171.136, 236.200, 283.460 ], "x_axis": [ 0.694, -0.277, -0.664 ], "y_axis": [ 0.323, -0.706, 0.631 ], "z_axis": [ -0.643, -0.652, -0.401 ], "quaternion": [ 0.383, 0.837, 0.014, -0.391 ] } }, { "index": 1412, "index_chain": 1412, "chain_name": "2", "nt_resnum": 1575, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1575", "linked_nts": [ "///2/1574", "///2/1576" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": 166.890, "beta": -141.685, "gamma": 153.427, "delta": 81.322, "epsilon": -157.883, "zeta": -85.271, "epsilon_zeta": -72.612, "bb_type": "BI", "chi": -164.837, "glyco_bond": "anti", "C5prime_xyz": [ -1.449, 8.740, 0.818 ], "P_xyz": [ 0.605, 9.463, -0.630 ], "form": ".", "ssZp": 4.455, "Dp": 4.532, "splay_angle": 25.709, "splay_distance": 4.095, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 129.165, "theta": -167.487, "eta_prime": 164.063, "theta_prime": -174.953, "eta_base": -163.794, "theta_base": -172.136, "v0": 1.431, "v1": -23.170, "v2": 34.849, "v3": -35.049, "v4": 21.203, "amplitude": 36.335, "phase_angle": 16.442, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 170.991, 229.159, 279.564 ], "x_axis": [ 0.940, 0.279, 0.199 ], "y_axis": [ -0.153, -0.177, 0.972 ], "z_axis": [ 0.306, -0.944, -0.123 ], "quaternion": [ 0.640, 0.748, 0.042, 0.169 ] } }, { "index": 1413, "index_chain": 1413, "chain_name": "2", "nt_resnum": 1576, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1576", "linked_nts": [ "///2/1575", "///2/1577" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet", "alpha": -55.211, "beta": 168.801, "gamma": 53.775, "delta": 82.440, "epsilon": -151.168, "zeta": -74.418, "epsilon_zeta": -76.750, "bb_type": "BI", "chi": -161.023, "glyco_bond": "anti", "C5prime_xyz": [ -1.513, 8.822, 0.607 ], "P_xyz": [ 1.040, 9.294, 0.970 ], "form": "A", "ssZp": 4.310, "Dp": 4.488, "splay_angle": 20.152, "splay_distance": 3.238, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 176.923, "theta": -145.139, "eta_prime": -176.478, "theta_prime": -145.168, "eta_base": -164.132, "theta_base": -112.524, "v0": -0.711, "v1": -20.752, "v2": 33.062, "v3": -34.385, "v4": 22.166, "amplitude": 35.126, "phase_angle": 19.738, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.781, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 170.727, 226.281, 276.664 ], "x_axis": [ 0.843, 0.240, 0.482 ], "y_axis": [ -0.407, -0.304, 0.862 ], "z_axis": [ 0.353, -0.922, -0.158 ], "quaternion": [ 0.587, 0.759, -0.055, 0.275 ] } }, { "index": 1414, "index_chain": 1414, "chain_name": "2", "nt_resnum": 1577, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1577", "linked_nts": [ "///2/1576", "///2/1578" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,internal-loop", "alpha": -56.130, "beta": 169.784, "gamma": 44.054, "delta": 81.457, "epsilon": -100.606, "zeta": -48.683, "epsilon_zeta": -51.923, "bb_type": "--", "chi": -154.739, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.807, 0.221 ], "P_xyz": [ 1.211, 9.239, 0.471 ], "form": ".", "ssZp": 3.804, "Dp": 4.691, "splay_angle": 50.159, "splay_distance": 8.953, "splay_ratio": 0.429, "d22": null, "d64": null, "eta": 178.381, "theta": -117.643, "eta_prime": -172.164, "theta_prime": -129.610, "eta_base": -130.999, "theta_base": -138.861, "v0": 1.540, "v1": -23.249, "v2": 34.901, "v3": -34.995, "v4": 21.120, "amplitude": 36.355, "phase_angle": 16.259, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.797, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 172.895, 224.003, 275.894 ], "x_axis": [ 0.428, 0.060, 0.902 ], "y_axis": [ -0.782, -0.476, 0.403 ], "z_axis": [ 0.453, -0.878, -0.157 ], "quaternion": [ 0.446, 0.718, -0.252, 0.472 ] } }, { "index": 1415, "index_chain": 1415, "chain_name": "2", "nt_resnum": 1578, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1578", "linked_nts": [ "///2/1577", "///2/1579" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": -97.957, "beta": 59.940, "gamma": -130.472, "delta": 146.604, "epsilon": -149.476, "zeta": 131.103, "epsilon_zeta": 79.421, "bb_type": "--", "chi": -139.731, "glyco_bond": "anti", "C5prime_xyz": [ -1.679, 8.669, -0.121 ], "P_xyz": [ -3.089, 10.696, -1.019 ], "form": ".", "ssZp": 1.888, "Dp": 1.930, "splay_angle": 49.399, "splay_distance": 7.280, "splay_ratio": 0.451, "d22": null, "d64": null, "eta": -113.200, "theta": 35.858, "eta_prime": -116.297, "theta_prime": 63.382, "eta_base": -129.912, "theta_base": 87.151, "v0": -19.399, "v1": 33.756, "v2": -34.406, "v3": 24.099, "v4": -3.132, "amplitude": 35.422, "phase_angle": 166.244, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 177.441, 216.837, 273.039 ], "x_axis": [ 0.578, -0.050, 0.814 ], "y_axis": [ -0.811, -0.147, 0.566 ], "z_axis": [ 0.092, -0.988, -0.125 ], "quaternion": [ 0.571, 0.680, -0.316, 0.333 ] } }, { "index": 1416, "index_chain": 1416, "chain_name": "2", "nt_resnum": 1579, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1579", "linked_nts": [ "///2/1578", "///2/1580" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -70.001, "beta": 145.146, "gamma": 54.812, "delta": 84.564, "epsilon": -169.690, "zeta": -90.904, "epsilon_zeta": -78.787, "bb_type": "BI", "chi": -68.435, "glyco_bond": "--", "C5prime_xyz": [ -2.800, 6.100, -3.455 ], "P_xyz": [ -1.242, 4.391, -4.697 ], "form": ".", "ssZp": -1.035, "Dp": 4.504, "splay_angle": 140.445, "splay_distance": 19.772, "splay_ratio": 0.941, "d22": null, "d64": null, "eta": 177.471, "theta": -158.630, "eta_prime": -178.554, "theta_prime": 170.655, "eta_base": 175.115, "theta_base": 176.534, "v0": 7.238, "v1": -27.101, "v2": 35.629, "v3": -32.457, "v4": 15.964, "amplitude": 35.922, "phase_angle": 7.318, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.785, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 171.322, 219.749, 270.377 ], "x_axis": [ 0.326, -0.233, -0.916 ], "y_axis": [ -0.902, -0.366, -0.228 ], "z_axis": [ -0.282, 0.901, -0.330 ], "quaternion": [ -0.397, 0.711, -0.399, -0.421 ] } }, { "index": 1417, "index_chain": 1417, "chain_name": "2", "nt_resnum": 1580, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1580", "linked_nts": [ "///2/1579", "///2/1581" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,cap-acceptor,phosphate,splayed-apart", "alpha": -156.334, "beta": 174.122, "gamma": -58.306, "delta": 145.673, "epsilon": -108.259, "zeta": -70.895, "epsilon_zeta": -37.364, "bb_type": "--", "chi": -108.380, "glyco_bond": "anti", "C5prime_xyz": [ -2.204, 8.277, -1.769 ], "P_xyz": [ -1.772, 10.850, -2.075 ], "form": ".", "ssZp": 1.065, "Dp": 1.163, "splay_angle": 106.139, "splay_distance": 15.936, "splay_ratio": 0.799, "d22": null, "d64": null, "eta": -4.124, "theta": -91.419, "eta_prime": -11.401, "theta_prime": -85.367, "eta_base": -47.422, "theta_base": -58.789, "v0": -22.181, "v1": 35.822, "v2": -35.023, "v3": 23.129, "v4": -0.801, "amplitude": 36.731, "phase_angle": 162.458, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 152.225, 217.701, 265.685 ], "x_axis": [ -0.353, -0.934, -0.044 ], "y_axis": [ 0.794, -0.325, 0.513 ], "z_axis": [ -0.494, 0.146, 0.857 ], "quaternion": [ 0.543, 0.169, -0.207, -0.796 ] } }, { "index": 1418, "index_chain": 1418, "chain_name": "2", "nt_resnum": 1581, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1581", "linked_nts": [ "///2/1580", "///2/1582" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -61.003, "beta": -161.365, "gamma": 58.485, "delta": 144.645, "epsilon": -116.053, "zeta": -58.781, "epsilon_zeta": -57.272, "bb_type": "--", "chi": -116.130, "glyco_bond": "anti", "C5prime_xyz": [ -2.116, 8.524, -1.443 ], "P_xyz": [ 0.122, 9.729, -0.781 ], "form": ".", "ssZp": 1.338, "Dp": 1.340, "splay_angle": 73.801, "splay_distance": 11.882, "splay_ratio": 0.601, "d22": 6.098, "d64": 6.189, "eta": -168.006, "theta": -44.347, "eta_prime": -119.973, "theta_prime": -71.342, "eta_base": -110.678, "theta_base": -45.538, "v0": -23.452, "v1": 36.505, "v2": -34.913, "v3": 22.275, "v4": 0.547, "amplitude": 37.057, "phase_angle": 160.415, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.875, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 161.534, 213.772, 278.008 ], "x_axis": [ 0.563, -0.528, -0.636 ], "y_axis": [ -0.064, 0.739, -0.670 ], "z_axis": [ 0.824, 0.418, 0.383 ], "quaternion": [ 0.819, -0.332, 0.445, -0.141 ] } }, { "index": 1419, "index_chain": 1419, "chain_name": "2", "nt_resnum": 1582, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1582", "linked_nts": [ "///2/1581", "///2/1583" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,isolated-canonical,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -111.821, "beta": -166.037, "gamma": 42.319, "delta": 81.699, "epsilon": -149.367, "zeta": -91.765, "epsilon_zeta": -57.602, "bb_type": "BI", "chi": -141.349, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.788, -0.586 ], "P_xyz": [ 1.094, 9.590, -0.214 ], "form": ".", "ssZp": 3.732, "Dp": 4.570, "splay_angle": 26.690, "splay_distance": 4.310, "splay_ratio": 0.232, "d22": 4.927, "d64": 4.890, "eta": 110.950, "theta": -165.601, "eta_prime": 155.875, "theta_prime": -160.143, "eta_base": -167.656, "theta_base": -140.667, "v0": 0.637, "v1": -22.215, "v2": 34.112, "v3": -34.721, "v4": 21.494, "amplitude": 35.793, "phase_angle": 17.630, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.065, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 166.779, 222.146, 271.409 ], "x_axis": [ -0.581, -0.639, -0.505 ], "y_axis": [ -0.768, 0.225, 0.599 ], "z_axis": [ -0.269, 0.736, -0.621 ], "quaternion": [ 0.076, -0.451, 0.779, 0.429 ] } }, { "index": 1420, "index_chain": 1420, "chain_name": "2", "nt_resnum": 1583, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1583", "linked_nts": [ "///2/1582", "///2/1584" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -55.556, "beta": 152.354, "gamma": 63.696, "delta": 80.767, "epsilon": -130.908, "zeta": 42.498, "epsilon_zeta": 186.594, "bb_type": "--", "chi": -148.557, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.817, -0.175 ], "P_xyz": [ 1.072, 8.968, -1.100 ], "form": ".", "ssZp": 3.913, "Dp": 4.707, "splay_angle": 26.044, "splay_distance": 4.161, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 177.257, "theta": -15.077, "eta_prime": -174.181, "theta_prime": -58.434, "eta_base": -152.183, "theta_base": -105.482, "v0": 1.450, "v1": -23.699, "v2": 35.674, "v3": -35.845, "v4": 21.698, "amplitude": 37.194, "phase_angle": 16.438, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.525, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 166.027, 225.318, 268.590 ], "x_axis": [ -0.804, -0.530, -0.269 ], "y_axis": [ -0.543, 0.471, 0.695 ], "z_axis": [ -0.242, 0.705, -0.667 ], "quaternion": [ 0.008, -0.313, 0.858, 0.408 ] } }, { "index": 1421, "index_chain": 1421, "chain_name": "2", "nt_resnum": 1584, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1584", "linked_nts": [ "///2/1583", "///2/1585" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart", "alpha": 165.985, "beta": 142.813, "gamma": 57.004, "delta": 146.158, "epsilon": -98.060, "zeta": 148.478, "epsilon_zeta": 113.463, "bb_type": "BII", "chi": -124.993, "glyco_bond": "anti", "C5prime_xyz": [ -1.875, 8.654, -0.954 ], "P_xyz": [ 0.733, 8.775, -0.676 ], "form": ".", "ssZp": 0.877, "Dp": 0.912, "splay_angle": 113.122, "splay_distance": 16.491, "splay_ratio": 0.835, "d22": null, "d64": null, "eta": 50.998, "theta": -179.298, "eta_prime": 117.533, "theta_prime": 115.217, "eta_base": 114.204, "theta_base": 95.708, "v0": -21.274, "v1": 35.280, "v2": -35.027, "v3": 23.646, "v4": -1.700, "amplitude": 36.465, "phase_angle": 163.854, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.641, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 162.938, 226.776, 266.214 ], "x_axis": [ 0.965, 0.261, -0.034 ], "y_axis": [ -0.147, 0.643, 0.751 ], "z_axis": [ 0.218, -0.720, 0.659 ], "quaternion": [ 0.904, 0.407, 0.070, 0.113 ] } }, { "index": 1422, "index_chain": 1422, "chain_name": "2", "nt_resnum": 1585, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1585", "linked_nts": [ "///2/1584", "///2/1586" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 52.182, "beta": -134.023, "gamma": 60.521, "delta": 145.602, "epsilon": -97.394, "zeta": -121.351, "epsilon_zeta": 23.957, "bb_type": "--", "chi": -128.052, "glyco_bond": "anti", "C5prime_xyz": [ -1.921, 8.640, -0.816 ], "P_xyz": [ -0.117, 9.550, 0.860 ], "form": ".", "ssZp": 0.881, "Dp": 0.907, "splay_angle": 126.873, "splay_distance": 18.062, "splay_ratio": 0.894, "d22": 12.250, "d64": 15.662, "eta": 30.722, "theta": -52.478, "eta_prime": 30.043, "theta_prime": -77.204, "eta_base": 21.297, "theta_base": -90.389, "v0": -21.750, "v1": 35.410, "v2": -34.825, "v3": 23.183, "v4": -1.097, "amplitude": 36.427, "phase_angle": 162.946, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 149.475, 235.696, 269.553 ], "x_axis": [ -0.176, 0.380, 0.908 ], "y_axis": [ 0.633, -0.663, 0.400 ], "z_axis": [ 0.754, 0.645, -0.124 ], "quaternion": [ -0.096, 0.635, 0.399, 0.655 ] } }, { "index": 1423, "index_chain": 1423, "chain_name": "2", "nt_resnum": 1586, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1586", "linked_nts": [ "///2/1585", "///2/1587" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart", "alpha": 27.043, "beta": 77.106, "gamma": 168.684, "delta": 146.780, "epsilon": -119.053, "zeta": -19.433, "epsilon_zeta": -99.620, "bb_type": "--", "chi": -135.528, "glyco_bond": "anti", "C5prime_xyz": [ -1.889, 8.700, -0.389 ], "P_xyz": [ -1.773, 9.499, -2.888 ], "form": ".", "ssZp": 1.326, "Dp": 1.345, "splay_angle": 136.749, "splay_distance": 14.839, "splay_ratio": 0.934, "d22": null, "d64": null, "eta": -7.720, "theta": -107.467, "eta_prime": 4.589, "theta_prime": -107.476, "eta_base": 19.882, "theta_base": 146.958, "v0": -21.722, "v1": 35.904, "v2": -35.590, "v3": 23.976, "v4": -1.613, "amplitude": 37.081, "phase_angle": 163.697, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 165.949, 230.129, 264.669 ], "x_axis": [ 0.023, -0.466, -0.884 ], "y_axis": [ -0.999, 0.023, -0.039 ], "z_axis": [ 0.039, 0.884, -0.465 ], "quaternion": [ 0.381, -0.605, 0.605, 0.349 ] } }, { "index": 1424, "index_chain": 1424, "chain_name": "2", "nt_resnum": 1587, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1587", "linked_nts": [ "///2/1586", "///2/1588" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -96.315, "beta": -152.839, "gamma": 173.905, "delta": 147.398, "epsilon": -149.142, "zeta": 48.525, "epsilon_zeta": 162.332, "bb_type": "--", "chi": 51.050, "glyco_bond": "syn", "C5prime_xyz": [ -5.395, 3.773, 0.693 ], "P_xyz": [ -5.296, 1.630, 2.207 ], "form": ".", "ssZp": -1.852, "Dp": 1.867, "splay_angle": 152.454, "splay_distance": 18.154, "splay_ratio": 0.971, "d22": null, "d64": null, "eta": -78.090, "theta": -3.387, "eta_prime": -11.052, "theta_prime": -22.900, "eta_base": 100.263, "theta_base": -10.272, "v0": -20.832, "v1": 35.322, "v2": -35.563, "v3": 24.448, "v4": -2.465, "amplitude": 36.810, "phase_angle": 165.042, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 157.313, 238.095, 273.732 ], "x_axis": [ -0.583, 0.492, 0.647 ], "y_axis": [ -0.536, 0.365, -0.761 ], "z_axis": [ -0.610, -0.791, 0.051 ], "quaternion": [ -0.456, -0.016, 0.689, -0.563 ] } }, { "index": 1425, "index_chain": 1425, "chain_name": "2", "nt_resnum": 1588, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1588", "linked_nts": [ "///2/1587", "///2/1589" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor,phosphate,splayed-apart", "alpha": -103.019, "beta": -128.031, "gamma": 67.835, "delta": 79.990, "epsilon": -145.462, "zeta": -76.271, "epsilon_zeta": -69.191, "bb_type": "BI", "chi": -163.186, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.678, 0.689 ], "P_xyz": [ 1.051, 8.592, 1.685 ], "form": "A", "ssZp": 4.516, "Dp": 4.691, "splay_angle": 21.978, "splay_distance": 3.371, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": -154.581, "theta": -141.695, "eta_prime": -125.176, "theta_prime": -138.579, "eta_base": -129.022, "theta_base": -101.737, "v0": 3.240, "v1": -25.852, "v2": 37.416, "v3": -36.544, "v4": 20.973, "amplitude": 38.539, "phase_angle": 13.866, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 158.796, 237.419, 255.652 ], "x_axis": [ -0.955, -0.294, 0.041 ], "y_axis": [ 0.003, 0.128, 0.992 ], "z_axis": [ -0.297, 0.947, -0.122 ], "quaternion": [ -0.114, -0.098, 0.742, 0.653 ] } }, { "index": 1426, "index_chain": 1426, "chain_name": "2", "nt_resnum": 1589, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1589", "linked_nts": [ "///2/1588", "///2/1590" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop,A-minor", "alpha": -63.980, "beta": 158.387, "gamma": 61.979, "delta": 80.726, "epsilon": -144.269, "zeta": -68.394, "epsilon_zeta": -75.875, "bb_type": "BI", "chi": -167.195, "glyco_bond": "anti", "C5prime_xyz": [ -1.253, 8.567, 0.933 ], "P_xyz": [ 1.330, 8.791, 0.546 ], "form": ".", "ssZp": 4.625, "Dp": 4.725, "splay_angle": 28.478, "splay_distance": 4.306, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 164.807, "theta": -134.510, "eta_prime": -178.037, "theta_prime": -135.161, "eta_base": -122.798, "theta_base": -97.304, "v0": 5.735, "v1": -27.819, "v2": 38.181, "v3": -35.827, "v4": 19.007, "amplitude": 38.802, "phase_angle": 10.264, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.798, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 156.497, 239.678, 254.662 ], "x_axis": [ -0.763, -0.152, 0.628 ], "y_axis": [ 0.539, 0.388, 0.748 ], "z_axis": [ -0.357, 0.909, -0.214 ], "quaternion": [ -0.320, 0.126, 0.769, 0.539 ] } }, { "index": 1427, "index_chain": 1427, "chain_name": "2", "nt_resnum": 1590, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1590", "linked_nts": [ "///2/1589", "///2/1591" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-acceptor", "alpha": -60.502, "beta": 163.367, "gamma": 59.464, "delta": 79.050, "epsilon": -146.465, "zeta": -47.589, "epsilon_zeta": -98.875, "bb_type": "BI", "chi": -173.355, "glyco_bond": "anti", "C5prime_xyz": [ -1.156, 8.521, 1.312 ], "P_xyz": [ 1.465, 8.682, 1.277 ], "form": ".", "ssZp": 4.716, "Dp": 4.717, "splay_angle": 41.317, "splay_distance": 6.850, "splay_ratio": 0.367, "d22": 3.777, "d64": 5.356, "eta": 166.764, "theta": -90.178, "eta_prime": -171.855, "theta_prime": -97.866, "eta_base": -107.874, "theta_base": -68.766, "v0": 5.835, "v1": -28.367, "v2": 39.027, "v3": -36.624, "v4": 19.396, "amplitude": 39.665, "phase_angle": 10.296, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.891, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 153.086, 242.235, 255.269 ], "x_axis": [ -0.147, 0.180, 0.973 ], "y_axis": [ 0.926, 0.371, 0.071 ], "z_axis": [ -0.348, 0.911, -0.221 ], "quaternion": [ 0.501, -0.419, -0.659, -0.373 ] } }, { "index": 1428, "index_chain": 1428, "chain_name": "2", "nt_resnum": 1591, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1591", "linked_nts": [ "///2/1590", "///2/1592" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-donor", "alpha": 151.545, "beta": -166.306, "gamma": -172.626, "delta": 81.622, "epsilon": -127.702, "zeta": -54.926, "epsilon_zeta": -72.777, "bb_type": "--", "chi": 169.463, "glyco_bond": "anti", "C5prime_xyz": [ -1.345, 8.088, 2.247 ], "P_xyz": [ 0.265, 10.144, 1.976 ], "form": ".", "ssZp": 4.710, "Dp": 4.761, "splay_angle": 32.586, "splay_distance": 4.994, "splay_ratio": 0.284, "d22": 3.700, "d64": 3.853, "eta": 168.779, "theta": -142.877, "eta_prime": -161.535, "theta_prime": -135.066, "eta_base": -91.968, "theta_base": -79.172, "v0": 5.628, "v1": -27.074, "v2": 37.145, "v3": -34.840, "v4": 18.415, "amplitude": 37.741, "phase_angle": 10.192, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.574, "filter_rmsd": 0.070, "frame": { "rmsd": 0.009, "origin": [ 151.510, 246.806, 260.120 ], "x_axis": [ 0.718, 0.377, 0.586 ], "y_axis": [ 0.643, -0.036, -0.765 ], "z_axis": [ -0.267, 0.926, -0.268 ], "quaternion": [ 0.595, -0.711, -0.359, -0.112 ] } }, { "index": 1429, "index_chain": 1429, "chain_name": "2", "nt_resnum": 1592, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1592", "linked_nts": [ "///2/1591", "///2/1593" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -72.870, "beta": -176.685, "gamma": 49.600, "delta": 81.587, "epsilon": -150.396, "zeta": -68.717, "epsilon_zeta": -81.679, "bb_type": "BI", "chi": -169.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.288, 8.639, 1.064 ], "P_xyz": [ 1.197, 8.932, 1.853 ], "form": "A", "ssZp": 4.573, "Dp": 4.628, "splay_angle": 23.678, "splay_distance": 3.784, "splay_ratio": 0.209, "d22": 4.370, "d64": 4.593, "eta": 154.783, "theta": -143.697, "eta_prime": -178.025, "theta_prime": -141.214, "eta_base": -101.635, "theta_base": -115.856, "v0": 3.473, "v1": -25.298, "v2": 36.273, "v3": -35.245, "v4": 20.031, "amplitude": 37.282, "phase_angle": 13.356, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.634, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 153.298, 251.385, 261.004 ], "x_axis": [ 0.930, 0.068, -0.361 ], "y_axis": [ -0.305, -0.404, -0.862 ], "z_axis": [ -0.204, 0.912, -0.355 ], "quaternion": [ 0.541, -0.820, 0.072, 0.172 ] } }, { "index": 1430, "index_chain": 1430, "chain_name": "2", "nt_resnum": 1593, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1593", "linked_nts": [ "///2/1592", "///2/1594" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -71.454, "beta": 175.726, "gamma": 60.284, "delta": 79.686, "epsilon": -159.034, "zeta": -70.136, "epsilon_zeta": -88.897, "bb_type": "BI", "chi": -166.540, "glyco_bond": "anti", "C5prime_xyz": [ -1.473, 8.759, 0.881 ], "P_xyz": [ 1.082, 9.290, 1.136 ], "form": "A", "ssZp": 4.515, "Dp": 4.558, "splay_angle": 17.783, "splay_distance": 2.800, "splay_ratio": 0.157, "d22": null, "d64": null, "eta": 166.592, "theta": -149.199, "eta_prime": -177.793, "theta_prime": -148.805, "eta_base": -136.811, "theta_base": -133.850, "v0": 0.903, "v1": -23.756, "v2": 36.257, "v3": -36.704, "v4": 22.575, "amplitude": 37.961, "phase_angle": 17.237, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.893, "filter_rmsd": 0.061, "frame": { "rmsd": 0.003, "origin": [ 153.951, 255.112, 261.048 ], "x_axis": [ 0.631, -0.220, -0.744 ], "y_axis": [ -0.763, -0.351, -0.543 ], "z_axis": [ -0.142, 0.910, -0.390 ], "quaternion": [ -0.472, 0.770, -0.319, -0.288 ] } }, { "index": 1431, "index_chain": 1431, "chain_name": "2", "nt_resnum": 1594, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1594", "linked_nts": [ "///2/1593", "///2/1595" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -93.137, "beta": -160.921, "gamma": 55.013, "delta": 82.594, "epsilon": -175.460, "zeta": -81.108, "epsilon_zeta": -94.352, "bb_type": "BI", "chi": -152.106, "glyco_bond": "anti", "C5prime_xyz": [ -1.181, 8.700, 0.065 ], "P_xyz": [ 1.378, 9.046, 0.552 ], "form": ".", "ssZp": 4.204, "Dp": 4.421, "splay_angle": 23.802, "splay_distance": 4.138, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 157.418, "theta": -141.749, "eta_prime": 167.074, "theta_prime": -152.587, "eta_base": -164.685, "theta_base": -157.046, "v0": 3.978, "v1": -25.084, "v2": 35.525, "v3": -34.185, "v4": 19.072, "amplitude": 36.385, "phase_angle": 12.478, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.326, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 154.881, 257.749, 260.904 ], "x_axis": [ 0.101, -0.647, -0.756 ], "y_axis": [ -0.986, 0.033, -0.161 ], "z_axis": [ 0.129, 0.762, -0.635 ], "quaternion": [ -0.353, 0.652, -0.626, -0.240 ] } }, { "index": 1432, "index_chain": 1432, "chain_name": "2", "nt_resnum": 1595, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1595", "linked_nts": [ "///2/1594", "///2/1596" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 153.667, "beta": -158.933, "gamma": 176.354, "delta": 81.260, "epsilon": -138.899, "zeta": -65.543, "epsilon_zeta": -73.357, "bb_type": "BI", "chi": -177.523, "glyco_bond": "anti", "C5prime_xyz": [ -1.404, 8.432, 1.562 ], "P_xyz": [ 0.243, 10.185, 0.520 ], "form": "A", "ssZp": 4.676, "Dp": 4.692, "splay_angle": 26.208, "splay_distance": 4.049, "splay_ratio": 0.229, "d22": 3.916, "d64": 3.822, "eta": 165.389, "theta": -154.040, "eta_prime": 173.625, "theta_prime": -149.565, "eta_base": -174.083, "theta_base": -101.114, "v0": 3.852, "v1": -25.651, "v2": 36.546, "v3": -35.313, "v4": 19.828, "amplitude": 37.483, "phase_angle": 12.840, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.818, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 157.759, 260.690, 260.470 ], "x_axis": [ -0.102, -0.692, -0.715 ], "y_axis": [ -0.974, 0.214, -0.068 ], "z_axis": [ 0.200, 0.690, -0.696 ], "quaternion": [ 0.323, -0.587, 0.709, 0.219 ] } }, { "index": 1433, "index_chain": 1433, "chain_name": "2", "nt_resnum": 1596, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1596", "linked_nts": [ "///2/1595", "///2/1597" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -61.495, "beta": 176.681, "gamma": 47.771, "delta": 81.496, "epsilon": -119.184, "zeta": -84.158, "epsilon_zeta": -35.026, "bb_type": "--", "chi": -162.784, "glyco_bond": "anti", "C5prime_xyz": [ -1.253, 8.660, 0.722 ], "P_xyz": [ 1.306, 8.960, 1.237 ], "form": "A", "ssZp": 4.366, "Dp": 4.746, "splay_angle": 26.669, "splay_distance": 4.342, "splay_ratio": 0.232, "d22": 4.362, "d64": 4.576, "eta": 171.060, "theta": -131.277, "eta_prime": -171.744, "theta_prime": -124.839, "eta_base": -110.920, "theta_base": -93.182, "v0": 3.524, "v1": -25.052, "v2": 35.934, "v3": -34.894, "v4": 19.766, "amplitude": 36.920, "phase_angle": 13.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.896, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 158.592, 260.950, 256.517 ], "x_axis": [ -0.822, -0.310, -0.478 ], "y_axis": [ -0.539, 0.698, 0.472 ], "z_axis": [ 0.187, 0.645, -0.740 ], "quaternion": [ 0.184, -0.235, 0.903, 0.309 ] } }, { "index": 1434, "index_chain": 1434, "chain_name": "2", "nt_resnum": 1597, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1597", "linked_nts": [ "///2/1596", "///2/1598" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,cap-donor,phosphate", "alpha": -54.141, "beta": 149.077, "gamma": 67.960, "delta": 78.998, "epsilon": -108.996, "zeta": -77.503, "epsilon_zeta": -31.493, "bb_type": "--", "chi": -154.894, "glyco_bond": "anti", "C5prime_xyz": [ -1.865, 8.917, 0.160 ], "P_xyz": [ 0.532, 9.540, -0.670 ], "form": ".", "ssZp": 3.866, "Dp": 4.590, "splay_angle": 31.399, "splay_distance": 5.132, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 178.442, "theta": -117.634, "eta_prime": -164.054, "theta_prime": -109.112, "eta_base": -122.519, "theta_base": -79.154, "v0": -4.193, "v1": -19.213, "v2": 33.868, "v3": -37.303, "v4": 26.148, "amplitude": 37.345, "phase_angle": 24.921, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.306, "filter_rmsd": 0.058, "frame": { "rmsd": 0.006, "origin": [ 157.434, 262.124, 252.500 ], "x_axis": [ -0.995, 0.089, -0.047 ], "y_axis": [ 0.051, 0.847, 0.530 ], "z_axis": [ 0.086, 0.525, -0.847 ], "quaternion": [ 0.035, 0.036, 0.960, 0.275 ] } }, { "index": 1435, "index_chain": 1435, "chain_name": "2", "nt_resnum": 1598, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1598", "linked_nts": [ "///2/1597", "///2/1599" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate", "alpha": -67.238, "beta": -179.169, "gamma": 65.085, "delta": 146.657, "epsilon": -152.168, "zeta": 152.861, "epsilon_zeta": 54.971, "bb_type": "--", "chi": -95.752, "glyco_bond": "anti", "C5prime_xyz": [ -2.389, 7.939, -2.304 ], "P_xyz": [ 0.099, 8.649, -2.748 ], "form": ".", "ssZp": 1.780, "Dp": 1.925, "splay_angle": 29.657, "splay_distance": 5.612, "splay_ratio": 0.353, "d22": null, "d64": null, "eta": 163.929, "theta": 133.273, "eta_prime": -153.820, "theta_prime": 123.424, "eta_base": -117.953, "theta_base": 128.300, "v0": -21.107, "v1": 35.211, "v2": -35.084, "v3": 23.796, "v4": -1.882, "amplitude": 36.469, "phase_angle": 164.158, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.320, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 154.157, 265.789, 251.029 ], "x_axis": [ -0.478, 0.170, 0.862 ], "y_axis": [ 0.581, 0.797, 0.165 ], "z_axis": [ -0.659, 0.579, -0.480 ], "quaternion": [ -0.458, 0.226, 0.830, 0.224 ] } }, { "index": 1436, "index_chain": 1436, "chain_name": "2", "nt_resnum": 1599, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1599", "linked_nts": [ "///2/1598", "///2/1600" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,junction-loop,cap-donor,phosphate", "alpha": -78.286, "beta": 166.249, "gamma": 46.900, "delta": 143.549, "epsilon": -97.137, "zeta": 75.028, "epsilon_zeta": 187.835, "bb_type": "--", "chi": 48.311, "glyco_bond": "syn", "C5prime_xyz": [ -5.548, 3.979, 0.681 ], "P_xyz": [ -5.728, 1.540, -0.264 ], "form": ".", "ssZp": -0.866, "Dp": 0.877, "splay_angle": 37.336, "splay_distance": 6.157, "splay_ratio": 0.346, "d22": null, "d64": null, "eta": -163.315, "theta": 111.901, "eta_prime": -169.310, "theta_prime": 64.470, "eta_base": -179.954, "theta_base": 116.244, "v0": -23.601, "v1": 36.397, "v2": -34.585, "v3": 21.903, "v4": 0.843, "amplitude": 36.827, "phase_angle": 159.907, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4b", "suiteness": 0.298, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 157.824, 267.135, 247.000 ], "x_axis": [ -0.279, -0.930, -0.238 ], "y_axis": [ 0.674, -0.013, -0.739 ], "z_axis": [ 0.684, -0.367, 0.630 ], "quaternion": [ 0.578, -0.161, 0.399, -0.693 ] } }, { "index": 1437, "index_chain": 1437, "chain_name": "2", "nt_resnum": 1600, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1600", "linked_nts": [ "///2/1599", "///2/1601" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-acceptor,phosphate", "alpha": 67.320, "beta": -163.692, "gamma": 169.554, "delta": 83.435, "epsilon": -93.893, "zeta": -108.013, "epsilon_zeta": 14.120, "bb_type": "--", "chi": 63.866, "glyco_bond": "syn", "C5prime_xyz": [ -5.101, 4.141, 1.983 ], "P_xyz": [ -4.980, 3.655, 4.556 ], "form": ".", "ssZp": -1.135, "Dp": 4.493, "splay_angle": 69.871, "splay_distance": 9.526, "splay_ratio": 0.574, "d22": null, "d64": null, "eta": 125.692, "theta": -150.231, "eta_prime": 112.839, "theta_prime": -145.437, "eta_base": -164.719, "theta_base": -130.309, "v0": -0.974, "v1": -20.074, "v2": 32.188, "v3": -33.681, "v4": 21.883, "amplitude": 34.299, "phase_angle": 20.208, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.779, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 163.860, 266.459, 245.988 ], "x_axis": [ -0.669, -0.279, 0.688 ], "y_axis": [ 0.139, 0.863, 0.486 ], "z_axis": [ -0.730, 0.421, -0.539 ], "quaternion": [ -0.405, -0.040, 0.876, 0.259 ] } }, { "index": 1438, "index_chain": 1438, "chain_name": "2", "nt_resnum": 1601, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1601", "linked_nts": [ "///2/1600", "///2/1602" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -35.191, "beta": 134.815, "gamma": 149.316, "delta": 149.238, "epsilon": -133.240, "zeta": 121.948, "epsilon_zeta": 104.812, "bb_type": "--", "chi": -81.210, "glyco_bond": "--", "C5prime_xyz": [ -2.787, 7.371, -2.721 ], "P_xyz": [ -2.544, 6.553, -5.208 ], "form": ".", "ssZp": 1.234, "Dp": 1.567, "splay_angle": 50.399, "splay_distance": 8.271, "splay_ratio": 0.428, "d22": null, "d64": null, "eta": -50.959, "theta": 51.096, "eta_prime": -49.692, "theta_prime": 57.127, "eta_base": -87.677, "theta_base": 85.640, "v0": -21.004, "v1": 36.099, "v2": -36.501, "v3": 25.363, "v4": -2.936, "amplitude": 37.682, "phase_angle": 165.619, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 171.386, 262.588, 241.616 ], "x_axis": [ 0.614, -0.003, -0.790 ], "y_axis": [ 0.489, 0.787, 0.377 ], "z_axis": [ 0.620, -0.617, 0.484 ], "quaternion": [ 0.849, 0.293, 0.415, -0.145 ] } }, { "index": 1439, "index_chain": 1439, "chain_name": "2", "nt_resnum": 1602, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1602", "linked_nts": [ "///2/1601", "///2/1603" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop,splayed-apart", "alpha": -78.991, "beta": 144.958, "gamma": 26.270, "delta": 78.522, "epsilon": -126.586, "zeta": -94.108, "epsilon_zeta": -32.478, "bb_type": "--", "chi": -166.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.636, 8.719, 0.907 ], "P_xyz": [ 0.878, 9.022, 1.574 ], "form": ".", "ssZp": 4.519, "Dp": 4.720, "splay_angle": 90.683, "splay_distance": 11.297, "splay_ratio": 0.719, "d22": null, "d64": null, "eta": 153.878, "theta": -109.987, "eta_prime": 150.098, "theta_prime": -146.372, "eta_base": 164.758, "theta_base": 141.559, "v0": 0.246, "v1": -23.529, "v2": 36.571, "v3": -37.429, "v4": 23.418, "amplitude": 38.503, "phase_angle": 18.231, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.262, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 165.554, 263.695, 247.376 ], "x_axis": [ 0.645, -0.589, -0.487 ], "y_axis": [ 0.725, 0.673, 0.148 ], "z_axis": [ 0.241, -0.448, 0.861 ], "quaternion": [ 0.892, 0.167, 0.204, -0.368 ] } }, { "index": 1440, "index_chain": 1440, "chain_name": "2", "nt_resnum": 1603, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1603", "linked_nts": [ "///2/1602", "///2/1604" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,splayed-apart", "alpha": 67.318, "beta": 151.105, "gamma": 166.014, "delta": 147.203, "epsilon": -58.114, "zeta": -143.344, "epsilon_zeta": 85.230, "bb_type": "--", "chi": 42.985, "glyco_bond": "syn", "C5prime_xyz": [ -5.389, 3.623, 0.279 ], "P_xyz": [ -6.228, 1.709, 1.878 ], "form": ".", "ssZp": 0.089, "Dp": 0.240, "splay_angle": 111.954, "splay_distance": 15.575, "splay_ratio": 0.829, "d22": null, "d64": null, "eta": 93.929, "theta": -109.126, "eta_prime": 89.207, "theta_prime": -96.127, "eta_base": 53.140, "theta_base": -46.195, "v0": -19.556, "v1": 34.354, "v2": -35.213, "v3": 24.849, "v4": -3.539, "amplitude": 36.176, "phase_angle": 166.748, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 164.268, 270.784, 256.077 ], "x_axis": [ -0.732, 0.186, 0.656 ], "y_axis": [ -0.044, -0.973, 0.227 ], "z_axis": [ 0.680, 0.137, 0.720 ], "quaternion": [ 0.062, 0.361, 0.098, 0.925 ] } }, { "index": 1441, "index_chain": 1441, "chain_name": "2", "nt_resnum": 1604, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1604", "linked_nts": [ "///2/1603", "///2/1605" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,cap-donor,splayed-apart", "alpha": 36.359, "beta": 119.018, "gamma": 20.117, "delta": 80.774, "epsilon": -148.068, "zeta": -59.361, "epsilon_zeta": -88.707, "bb_type": "BI", "chi": -171.783, "glyco_bond": "anti", "C5prime_xyz": [ -1.989, 8.770, 1.135 ], "P_xyz": [ 0.375, 8.642, 2.257 ], "form": ".", "ssZp": 4.379, "Dp": 4.444, "splay_angle": 28.079, "splay_distance": 4.432, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 172.521, "theta": -120.268, "eta_prime": -148.043, "theta_prime": -120.459, "eta_base": -173.489, "theta_base": -67.476, "v0": -4.772, "v1": -17.781, "v2": 32.155, "v3": -35.841, "v4": 25.618, "amplitude": 35.801, "phase_angle": 26.086, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 172.592, 262.381, 245.943 ], "x_axis": [ 0.264, 0.941, 0.210 ], "y_axis": [ -0.669, 0.022, 0.743 ], "z_axis": [ 0.694, -0.337, 0.636 ], "quaternion": [ 0.693, 0.389, 0.175, 0.581 ] } }, { "index": 1442, "index_chain": 1442, "chain_name": "2", "nt_resnum": 1605, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1605", "linked_nts": [ "///2/1604", "///2/1606" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -69.579, "beta": 174.903, "gamma": 50.017, "delta": 82.012, "epsilon": -82.508, "zeta": -133.374, "epsilon_zeta": 50.866, "bb_type": "--", "chi": -159.338, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.760, 0.493 ], "P_xyz": [ 1.252, 9.151, 0.799 ], "form": ".", "ssZp": 3.758, "Dp": 4.615, "splay_angle": 20.569, "splay_distance": 3.617, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 178.824, "theta": -126.279, "eta_prime": -164.125, "theta_prime": -106.369, "eta_base": -95.139, "theta_base": -69.072, "v0": 2.450, "v1": -24.056, "v2": 35.335, "v3": -34.900, "v4": 20.467, "amplitude": 36.558, "phase_angle": 14.863, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.878, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 175.201, 264.018, 249.130 ], "x_axis": [ -0.412, 0.527, 0.743 ], "y_axis": [ -0.564, -0.788, 0.247 ], "z_axis": [ 0.716, -0.317, 0.622 ], "quaternion": [ 0.325, 0.434, -0.021, 0.840 ] } }, { "index": 1443, "index_chain": 1443, "chain_name": "2", "nt_resnum": 1606, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1606", "linked_nts": [ "///2/1605", "///2/1607" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -11.688, "beta": 124.072, "gamma": 47.221, "delta": 143.997, "epsilon": -93.303, "zeta": 120.308, "epsilon_zeta": 146.389, "bb_type": "--", "chi": -77.272, "glyco_bond": "--", "C5prime_xyz": [ -3.035, 7.294, -2.836 ], "P_xyz": [ -0.530, 7.144, -3.590 ], "form": ".", "ssZp": 0.433, "Dp": 0.828, "splay_angle": 48.168, "splay_distance": 8.005, "splay_ratio": 0.412, "d22": null, "d64": null, "eta": -171.208, "theta": 142.193, "eta_prime": -134.751, "theta_prime": 112.097, "eta_base": -104.707, "theta_base": 159.144, "v0": -23.421, "v1": 36.215, "v2": -34.464, "v3": 21.865, "v4": 0.772, "amplitude": 36.669, "phase_angle": 160.031, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 174.986, 262.609, 252.454 ], "x_axis": [ -0.901, 0.142, 0.409 ], "y_axis": [ 0.015, -0.934, 0.357 ], "z_axis": [ 0.433, 0.328, 0.840 ], "quaternion": [ 0.033, 0.220, 0.179, 0.959 ] } }, { "index": 1444, "index_chain": 1444, "chain_name": "2", "nt_resnum": 1607, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1607", "linked_nts": [ "///2/1606", "///2/1608" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -81.640, "beta": 167.565, "gamma": 9.437, "delta": 81.079, "epsilon": -133.579, "zeta": -71.314, "epsilon_zeta": -62.265, "bb_type": "BI", "chi": 174.022, "glyco_bond": "anti", "C5prime_xyz": [ -1.568, 8.216, 1.994 ], "P_xyz": [ 0.276, 8.274, 3.860 ], "form": "A", "ssZp": 4.692, "Dp": 4.718, "splay_angle": 26.364, "splay_distance": 4.093, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 163.402, "theta": -137.618, "eta_prime": 151.889, "theta_prime": -128.132, "eta_base": -167.985, "theta_base": -83.839, "v0": 3.710, "v1": -25.424, "v2": 36.320, "v3": -35.190, "v4": 19.841, "amplitude": 37.282, "phase_angle": 13.044, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 182.987, 262.587, 252.210 ], "x_axis": [ -0.763, 0.284, 0.581 ], "y_axis": [ -0.484, -0.846, -0.222 ], "z_axis": [ 0.429, -0.451, 0.783 ], "quaternion": [ 0.209, 0.274, -0.183, 0.921 ] } }, { "index": 1445, "index_chain": 1445, "chain_name": "2", "nt_resnum": 1608, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1608", "linked_nts": [ "///2/1607", "///2/1609" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -59.519, "beta": 178.432, "gamma": 47.119, "delta": 82.651, "epsilon": -145.091, "zeta": -74.933, "epsilon_zeta": -70.158, "bb_type": "BI", "chi": -164.178, "glyco_bond": "anti", "C5prime_xyz": [ -1.344, 8.656, 0.794 ], "P_xyz": [ 1.170, 9.023, 1.456 ], "form": "A", "ssZp": 4.485, "Dp": 4.633, "splay_angle": 25.093, "splay_distance": 3.913, "splay_ratio": 0.217, "d22": 4.263, "d64": 4.250, "eta": 167.732, "theta": -142.897, "eta_prime": -175.189, "theta_prime": -138.833, "eta_base": -120.776, "theta_base": -102.128, "v0": 2.875, "v1": -24.123, "v2": 34.994, "v3": -34.332, "v4": 19.841, "amplitude": 36.090, "phase_angle": 14.161, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.823, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 183.534, 262.718, 256.264 ], "x_axis": [ -0.889, -0.403, 0.217 ], "y_axis": [ 0.214, -0.786, -0.580 ], "z_axis": [ 0.404, -0.470, 0.785 ], "quaternion": [ -0.166, 0.167, -0.282, 0.930 ] } }, { "index": 1446, "index_chain": 1446, "chain_name": "2", "nt_resnum": 1609, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1609", "linked_nts": [ "///2/1608", "///2/1610" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -59.009, "beta": 165.770, "gamma": 55.518, "delta": 82.285, "epsilon": -148.835, "zeta": -85.441, "epsilon_zeta": -63.394, "bb_type": "BI", "chi": -161.216, "glyco_bond": "anti", "C5prime_xyz": [ -1.243, 8.728, 0.609 ], "P_xyz": [ 1.371, 8.957, 0.616 ], "form": ".", "ssZp": 4.445, "Dp": 4.625, "splay_angle": 31.595, "splay_distance": 4.908, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 169.187, "theta": -155.397, "eta_prime": -173.385, "theta_prime": -152.755, "eta_base": -122.012, "theta_base": -138.263, "v0": 3.052, "v1": -24.438, "v2": 35.337, "v3": -34.554, "v4": 19.879, "amplitude": 36.405, "phase_angle": 13.914, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 183.408, 260.965, 259.760 ], "x_axis": [ -0.557, -0.799, -0.225 ], "y_axis": [ 0.750, -0.368, -0.550 ], "z_axis": [ 0.357, -0.475, 0.804 ], "quaternion": [ -0.469, 0.040, -0.311, 0.826 ] } }, { "index": 1447, "index_chain": 1447, "chain_name": "2", "nt_resnum": 1610, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1610", "linked_nts": [ "///2/1609", "///2/1611" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate", "alpha": -66.353, "beta": -177.912, "gamma": 54.462, "delta": 82.869, "epsilon": -152.992, "zeta": -72.905, "epsilon_zeta": -80.087, "bb_type": "BI", "chi": -157.005, "glyco_bond": "anti", "C5prime_xyz": [ -1.118, 8.701, 0.368 ], "P_xyz": [ 1.488, 8.924, 0.598 ], "form": "A", "ssZp": 4.366, "Dp": 4.628, "splay_angle": 23.933, "splay_distance": 3.816, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 175.137, "theta": -146.884, "eta_prime": -179.520, "theta_prime": -147.093, "eta_base": -158.672, "theta_base": -129.442, "v0": 5.260, "v1": -26.309, "v2": 36.217, "v3": -34.169, "v4": 18.256, "amplitude": 36.845, "phase_angle": 10.597, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.832, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 184.194, 259.675, 264.430 ], "x_axis": [ -0.270, -0.750, -0.604 ], "y_axis": [ 0.897, 0.033, -0.442 ], "z_axis": [ 0.351, -0.661, 0.663 ], "quaternion": [ 0.597, 0.092, 0.400, -0.689 ] } }, { "index": 1448, "index_chain": 1448, "chain_name": "2", "nt_resnum": 1611, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1611", "linked_nts": [ "///2/1610", "///2/1612" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -63.486, "beta": 167.269, "gamma": 56.891, "delta": 78.830, "epsilon": -149.326, "zeta": -76.987, "epsilon_zeta": -72.339, "bb_type": "BI", "chi": -168.367, "glyco_bond": "anti", "C5prime_xyz": [ -1.563, 8.702, 0.990 ], "P_xyz": [ 0.999, 9.237, 1.108 ], "form": "A", "ssZp": 4.609, "Dp": 4.661, "splay_angle": 23.046, "splay_distance": 3.621, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 167.199, "theta": -149.918, "eta_prime": -179.221, "theta_prime": -149.357, "eta_base": -145.329, "theta_base": -123.213, "v0": 1.870, "v1": -24.876, "v2": 37.181, "v3": -37.127, "v4": 22.217, "amplitude": 38.660, "phase_angle": 15.900, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.949, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 184.005, 257.030, 267.174 ], "x_axis": [ 0.095, -0.568, -0.817 ], "y_axis": [ 0.921, 0.361, -0.144 ], "z_axis": [ 0.377, -0.739, 0.558 ], "quaternion": [ 0.710, 0.210, 0.421, -0.525 ] } }, { "index": 1449, "index_chain": 1449, "chain_name": "2", "nt_resnum": 1612, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1612", "linked_nts": [ "///2/1611", "///2/1613" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -59.369, "beta": 169.856, "gamma": 53.458, "delta": 81.406, "epsilon": -147.010, "zeta": -77.758, "epsilon_zeta": -69.253, "bb_type": "BI", "chi": -169.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.492, 8.668, 1.091 ], "P_xyz": [ 1.062, 9.053, 1.550 ], "form": "A", "ssZp": 4.559, "Dp": 4.613, "splay_angle": 23.449, "splay_distance": 3.719, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 170.673, "theta": -147.359, "eta_prime": -177.470, "theta_prime": -146.326, "eta_base": -137.214, "theta_base": -123.418, "v0": 1.657, "v1": -23.454, "v2": 35.125, "v3": -35.168, "v4": 21.123, "amplitude": 36.557, "phase_angle": 16.089, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 183.778, 253.641, 268.432 ], "x_axis": [ 0.522, -0.162, -0.837 ], "y_axis": [ 0.723, 0.604, 0.335 ], "z_axis": [ 0.452, -0.780, 0.432 ], "quaternion": [ 0.800, 0.348, 0.403, -0.277 ] } }, { "index": 1450, "index_chain": 1450, "chain_name": "2", "nt_resnum": 1613, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1613", "linked_nts": [ "///2/1612", "///2/1614" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor,phosphate", "alpha": -61.841, "beta": 174.779, "gamma": 50.196, "delta": 82.903, "epsilon": -166.507, "zeta": -85.501, "epsilon_zeta": -81.006, "bb_type": "BI", "chi": -168.515, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.711, 1.040 ], "P_xyz": [ 1.013, 9.101, 1.804 ], "form": "A", "ssZp": 4.355, "Dp": 4.401, "splay_angle": 23.158, "splay_distance": 3.806, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 167.159, "theta": -136.459, "eta_prime": -179.890, "theta_prime": -142.960, "eta_base": -142.464, "theta_base": -125.745, "v0": 0.399, "v1": -21.459, "v2": 33.109, "v3": -33.851, "v4": 21.109, "amplitude": 34.812, "phase_angle": 17.997, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.948, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 184.254, 249.979, 268.874 ], "x_axis": [ 0.696, 0.374, -0.613 ], "y_axis": [ 0.312, 0.612, 0.727 ], "z_axis": [ 0.647, -0.697, 0.310 ], "quaternion": [ 0.809, 0.440, 0.389, 0.019 ] } }, { "index": 1451, "index_chain": 1451, "chain_name": "2", "nt_resnum": 1614, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1614", "linked_nts": [ "///2/1613", "///2/1615" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 170.852, "beta": -149.632, "gamma": 154.891, "delta": 81.810, "epsilon": -107.618, "zeta": -125.195, "epsilon_zeta": 17.577, "bb_type": "--", "chi": 174.909, "glyco_bond": "anti", "C5prime_xyz": [ -1.794, 8.347, 1.911 ], "P_xyz": [ 0.444, 9.573, 1.335 ], "form": ".", "ssZp": 4.560, "Dp": 4.609, "splay_angle": 31.427, "splay_distance": 4.871, "splay_ratio": 0.271, "d22": null, "d64": null, "eta": 167.475, "theta": -179.297, "eta_prime": 178.862, "theta_prime": -173.076, "eta_base": -149.368, "theta_base": -167.470, "v0": -0.400, "v1": -21.375, "v2": 33.750, "v3": -34.961, "v4": 22.297, "amplitude": 35.750, "phase_angle": 19.255, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.150, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 185.696, 246.516, 268.230 ], "x_axis": [ 0.691, 0.684, -0.233 ], "y_axis": [ -0.055, 0.372, 0.927 ], "z_axis": [ 0.721, -0.627, 0.295 ], "quaternion": [ 0.768, 0.506, 0.311, 0.241 ] } }, { "index": 1452, "index_chain": 1452, "chain_name": "2", "nt_resnum": 1615, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1615", "linked_nts": [ "///2/1614", "///2/1616" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,phosphate", "alpha": -59.372, "beta": 145.321, "gamma": 50.435, "delta": 81.603, "epsilon": -149.818, "zeta": -66.349, "epsilon_zeta": -83.469, "bb_type": "BI", "chi": -169.078, "glyco_bond": "anti", "C5prime_xyz": [ -1.549, 8.675, 1.050 ], "P_xyz": [ 1.061, 8.841, 1.182 ], "form": "A", "ssZp": 4.480, "Dp": 4.550, "splay_angle": 22.017, "splay_distance": 3.497, "splay_ratio": 0.193, "d22": 4.109, "d64": 3.894, "eta": 164.277, "theta": -133.476, "eta_prime": 168.512, "theta_prime": -136.024, "eta_base": 176.786, "theta_base": -100.701, "v0": 0.153, "v1": -21.983, "v2": 34.170, "v3": -35.039, "v4": 22.024, "amplitude": 36.005, "phase_angle": 18.372, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.338, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 186.285, 241.694, 267.877 ], "x_axis": [ 0.479, 0.877, -0.029 ], "y_axis": [ -0.218, 0.151, 0.964 ], "z_axis": [ 0.850, -0.456, 0.264 ], "quaternion": [ 0.688, 0.516, 0.320, 0.398 ] } }, { "index": 1453, "index_chain": 1453, "chain_name": "2", "nt_resnum": 1616, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1616", "linked_nts": [ "///2/1615", "///2/1617" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate", "alpha": -63.549, "beta": 178.363, "gamma": 45.611, "delta": 82.634, "epsilon": -86.077, "zeta": -131.510, "epsilon_zeta": 45.433, "bb_type": "--", "chi": -156.424, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.733, 0.320 ], "P_xyz": [ 1.170, 9.207, 0.741 ], "form": ".", "ssZp": 3.673, "Dp": 4.625, "splay_angle": 29.547, "splay_distance": 4.824, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": -176.934, "theta": -144.561, "eta_prime": -165.670, "theta_prime": -133.180, "eta_base": -118.569, "theta_base": -100.013, "v0": 1.947, "v1": -23.338, "v2": 34.674, "v3": -34.495, "v4": 20.538, "amplitude": 35.996, "phase_angle": 15.576, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.871, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 189.780, 241.630, 267.797 ], "x_axis": [ 0.174, 0.772, 0.612 ], "y_axis": [ -0.405, -0.510, 0.759 ], "z_axis": [ 0.898, -0.379, 0.224 ], "quaternion": [ 0.471, 0.604, 0.152, 0.625 ] } }, { "index": 1454, "index_chain": 1454, "chain_name": "2", "nt_resnum": 1617, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1617", "linked_nts": [ "///2/1616", "///2/1618" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,cap-acceptor", "alpha": -45.668, "beta": 122.903, "gamma": 48.818, "delta": 80.039, "epsilon": -136.975, "zeta": -65.368, "epsilon_zeta": -71.606, "bb_type": "BI", "chi": -154.740, "glyco_bond": "anti", "C5prime_xyz": [ -1.335, 8.776, 0.183 ], "P_xyz": [ 1.140, 8.368, -0.583 ], "form": ".", "ssZp": 4.224, "Dp": 4.724, "splay_angle": 67.415, "splay_distance": 10.078, "splay_ratio": 0.555, "d22": null, "d64": null, "eta": 157.484, "theta": -102.584, "eta_prime": 172.337, "theta_prime": -152.284, "eta_base": -150.201, "theta_base": 137.219, "v0": 3.355, "v1": -25.814, "v2": 37.305, "v3": -36.370, "v4": 20.787, "amplitude": 38.397, "phase_angle": 13.700, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.073, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 193.485, 240.462, 270.655 ], "x_axis": [ -0.484, 0.492, 0.724 ], "y_axis": [ -0.402, -0.860, 0.316 ], "z_axis": [ 0.777, -0.138, 0.614 ], "quaternion": [ 0.260, 0.436, 0.052, 0.860 ] } }, { "index": 1455, "index_chain": 1455, "chain_name": "2", "nt_resnum": 1618, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1618", "linked_nts": [ "///2/1617", "///2/1619" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": 177.314, "beta": 158.467, "gamma": 52.612, "delta": 80.924, "epsilon": -144.885, "zeta": -64.465, "epsilon_zeta": -80.420, "bb_type": "BI", "chi": -167.338, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.679, 0.963 ], "P_xyz": [ 1.315, 8.897, 1.054 ], "form": ".", "ssZp": 4.574, "Dp": 4.660, "splay_angle": 27.718, "splay_distance": 4.315, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 30.828, "theta": -131.836, "eta_prime": 54.780, "theta_prime": -130.627, "eta_base": 28.974, "theta_base": -92.136, "v0": 2.390, "v1": -24.338, "v2": 35.808, "v3": -35.466, "v4": 20.842, "amplitude": 37.076, "phase_angle": 15.025, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.875, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 199.943, 233.684, 266.925 ], "x_axis": [ -0.640, -0.643, -0.421 ], "y_axis": [ -0.419, -0.167, 0.892 ], "z_axis": [ -0.644, 0.748, -0.162 ], "quaternion": [ -0.087, -0.415, 0.639, 0.641 ] } }, { "index": 1456, "index_chain": 1456, "chain_name": "2", "nt_resnum": 1619, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1619", "linked_nts": [ "///2/1618", "///2/1620" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -63.921, "beta": 169.312, "gamma": 57.878, "delta": 80.637, "epsilon": -119.329, "zeta": -102.784, "epsilon_zeta": -16.545, "bb_type": "--", "chi": -165.445, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.654, 0.846 ], "P_xyz": [ 1.216, 9.017, 0.949 ], "form": ".", "ssZp": 4.451, "Dp": 4.754, "splay_angle": 53.691, "splay_distance": 7.497, "splay_ratio": 0.467, "d22": null, "d64": null, "eta": 174.242, "theta": -152.664, "eta_prime": -167.302, "theta_prime": -137.366, "eta_base": -110.825, "theta_base": -91.302, "v0": 2.573, "v1": -24.708, "v2": 36.274, "v3": -35.795, "v4": 20.954, "amplitude": 37.516, "phase_angle": 14.786, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 196.218, 234.734, 265.019 ], "x_axis": [ -0.737, -0.586, 0.337 ], "y_axis": [ 0.145, 0.349, 0.926 ], "z_axis": [ -0.660, 0.731, -0.172 ], "quaternion": [ -0.332, -0.147, 0.751, 0.551 ] } }, { "index": 1457, "index_chain": 1457, "chain_name": "2", "nt_resnum": 1620, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1620", "linked_nts": [ "///2/1619", "///2/1621" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart", "alpha": -43.223, "beta": -172.953, "gamma": 57.978, "delta": 141.989, "epsilon": -118.870, "zeta": 135.833, "epsilon_zeta": 105.297, "bb_type": "BII", "chi": 96.510, "glyco_bond": "--", "C5prime_xyz": [ -4.588, 5.431, 2.698 ], "P_xyz": [ -5.123, 3.033, 3.597 ], "form": ".", "ssZp": -1.026, "Dp": 1.405, "splay_angle": 92.448, "splay_distance": 14.542, "splay_ratio": 0.722, "d22": null, "d64": null, "eta": -144.606, "theta": 149.018, "eta_prime": -134.806, "theta_prime": 110.914, "eta_base": -111.910, "theta_base": 68.556, "v0": -24.325, "v1": 35.947, "v2": -33.221, "v3": 20.079, "v4": 2.474, "amplitude": 35.998, "phase_angle": 157.349, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.240, "filter_rmsd": 0.046, "frame": { "rmsd": 0.015, "origin": [ 190.668, 239.064, 267.599 ], "x_axis": [ -0.198, -0.707, -0.679 ], "y_axis": [ 0.605, 0.457, -0.652 ], "z_axis": [ 0.771, -0.539, 0.338 ], "quaternion": [ 0.632, -0.045, 0.574, -0.519 ] } }, { "index": 1458, "index_chain": 1458, "chain_name": "2", "nt_resnum": 1621, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1621", "linked_nts": [ "///2/1620", "///2/1622" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 50.381, "beta": -177.394, "gamma": -177.550, "delta": 145.990, "epsilon": -125.193, "zeta": -64.496, "epsilon_zeta": -60.696, "bb_type": "--", "chi": -135.153, "glyco_bond": "anti", "C5prime_xyz": [ -1.813, 8.683, -0.400 ], "P_xyz": [ -0.130, 10.036, -1.882 ], "form": ".", "ssZp": 1.551, "Dp": 1.541, "splay_angle": 48.110, "splay_distance": 7.846, "splay_ratio": 0.409, "d22": 7.497, "d64": 8.768, "eta": 137.567, "theta": -86.509, "eta_prime": 119.967, "theta_prime": -127.788, "eta_base": 128.627, "theta_base": -158.137, "v0": -20.760, "v1": 34.714, "v2": -34.669, "v3": 23.571, "v4": -1.950, "amplitude": 36.009, "phase_angle": 164.320, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 203.751, 242.823, 262.483 ], "x_axis": [ -0.255, -0.855, 0.451 ], "y_axis": [ -0.880, 0.399, 0.258 ], "z_axis": [ -0.401, -0.331, -0.854 ], "quaternion": [ -0.269, -0.548, 0.792, -0.023 ] } }, { "index": 1459, "index_chain": 1459, "chain_name": "2", "nt_resnum": 1622, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1622", "linked_nts": [ "///2/1621", "///2/1623" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 156.543, "beta": -177.075, "gamma": 62.759, "delta": 145.922, "epsilon": -145.511, "zeta": 21.760, "epsilon_zeta": 192.729, "bb_type": "--", "chi": -134.018, "glyco_bond": "anti", "C5prime_xyz": [ -1.745, 8.673, -0.478 ], "P_xyz": [ 0.617, 9.232, 0.529 ], "form": ".", "ssZp": 1.812, "Dp": 1.834, "splay_angle": 160.698, "splay_distance": 17.861, "splay_ratio": 0.986, "d22": null, "d64": null, "eta": 21.825, "theta": 34.500, "eta_prime": 93.138, "theta_prime": 3.543, "eta_base": 100.469, "theta_base": 23.089, "v0": -20.194, "v1": 34.149, "v2": -34.322, "v3": 23.540, "v4": -2.308, "amplitude": 35.549, "phase_angle": 164.904, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2z", "suiteness": 0.309, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 203.256, 245.288, 255.051 ], "x_axis": [ 0.771, 0.408, 0.489 ], "y_axis": [ -0.633, 0.582, 0.511 ], "z_axis": [ -0.076, -0.703, 0.707 ], "quaternion": [ 0.875, 0.347, -0.162, 0.298 ] } }, { "index": 1460, "index_chain": 1460, "chain_name": "2", "nt_resnum": 1623, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1623", "linked_nts": [ "///2/1622", "///2/1624" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 86.401, "beta": -159.271, "gamma": -80.029, "delta": 79.425, "epsilon": -161.457, "zeta": 50.628, "epsilon_zeta": 147.915, "bb_type": "--", "chi": 28.170, "glyco_bond": "syn", "C5prime_xyz": [ -5.488, 3.438, -0.069 ], "P_xyz": [ -7.994, 2.645, -0.155 ], "form": ".", "ssZp": -4.228, "Dp": 4.512, "splay_angle": 99.828, "splay_distance": 10.536, "splay_ratio": 0.774, "d22": null, "d64": null, "eta": -137.625, "theta": -49.394, "eta_prime": -112.540, "theta_prime": -89.652, "eta_base": -96.287, "theta_base": -172.614, "v0": -0.111, "v1": -22.579, "v2": 35.363, "v3": -36.448, "v4": 23.037, "amplitude": 37.352, "phase_angle": 18.784, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 186.464, 249.117, 259.784 ], "x_axis": [ -0.692, 0.474, 0.544 ], "y_axis": [ 0.705, 0.278, 0.653 ], "z_axis": [ 0.158, 0.835, -0.527 ], "quaternion": [ -0.122, 0.373, 0.790, 0.471 ] } }, { "index": 1461, "index_chain": 1461, "chain_name": "2", "nt_resnum": 1624, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1624", "linked_nts": [ "///2/1623", "///2/1625" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": 73.270, "beta": 127.397, "gamma": 68.127, "delta": 78.184, "epsilon": -124.337, "zeta": -65.796, "epsilon_zeta": -58.541, "bb_type": "--", "chi": -2.186, "glyco_bond": "syn", "C5prime_xyz": [ -5.363, 4.185, -1.655 ], "P_xyz": [ -5.200, 1.610, -1.200 ], "form": ".", "ssZp": -4.652, "Dp": 4.675, "splay_angle": 31.098, "splay_distance": 4.858, "splay_ratio": 0.270, "d22": 4.208, "d64": 5.537, "eta": -48.863, "theta": -115.350, "eta_prime": 18.843, "theta_prime": -117.279, "eta_base": 35.568, "theta_base": -140.809, "v0": -1.365, "v1": -22.255, "v2": 36.076, "v3": -37.851, "v4": 24.713, "amplitude": 38.533, "phase_angle": 20.573, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "5d", "suiteness": 0.406, "filter_rmsd": 0.111, "frame": { "rmsd": 0.010, "origin": [ 190.407, 243.470, 267.757 ], "x_axis": [ -0.686, -0.243, 0.686 ], "y_axis": [ -0.482, -0.555, -0.678 ], "z_axis": [ 0.545, -0.796, 0.264 ], "quaternion": [ 0.075, 0.389, -0.466, 0.791 ] } }, { "index": 1462, "index_chain": 1462, "chain_name": "2", "nt_resnum": 1625, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1625", "linked_nts": [ "///2/1624", "///2/1626" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -58.896, "beta": 165.254, "gamma": 55.496, "delta": 80.041, "epsilon": -150.138, "zeta": -75.591, "epsilon_zeta": -74.547, "bb_type": "BI", "chi": -162.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.733, 0.680 ], "P_xyz": [ 1.099, 9.190, 0.700 ], "form": "A", "ssZp": 4.488, "Dp": 4.625, "splay_angle": 26.843, "splay_distance": 4.232, "splay_ratio": 0.233, "d22": 4.585, "d64": 4.910, "eta": 160.808, "theta": -147.702, "eta_prime": -170.878, "theta_prime": -147.027, "eta_base": -163.969, "theta_base": -121.607, "v0": 1.409, "v1": -24.012, "v2": 36.230, "v3": -36.399, "v4": 22.058, "amplitude": 37.786, "phase_angle": 16.503, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.648, "filter_rmsd": 0.103, "frame": { "rmsd": 0.002, "origin": [ 186.214, 245.696, 268.785 ], "x_axis": [ 0.825, 0.559, -0.089 ], "y_axis": [ 0.068, -0.253, -0.965 ], "z_axis": [ -0.562, 0.790, -0.247 ], "quaternion": [ 0.575, -0.762, -0.206, 0.213 ] } }, { "index": 1463, "index_chain": 1463, "chain_name": "2", "nt_resnum": 1626, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1626", "linked_nts": [ "///2/1625", "///2/1627" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper", "alpha": -59.860, "beta": 166.944, "gamma": 60.832, "delta": 79.810, "epsilon": -149.449, "zeta": -71.890, "epsilon_zeta": -77.559, "bb_type": "BI", "chi": -163.085, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.773, 0.694 ], "P_xyz": [ 1.209, 9.198, 0.591 ], "form": "A", "ssZp": 4.498, "Dp": 4.634, "splay_angle": 22.042, "splay_distance": 3.519, "splay_ratio": 0.193, "d22": 4.105, "d64": 4.115, "eta": 174.093, "theta": -144.796, "eta_prime": -171.518, "theta_prime": -145.614, "eta_base": -131.542, "theta_base": -118.772, "v0": 1.607, "v1": -24.235, "v2": 36.406, "v3": -36.477, "v4": 21.969, "amplitude": 37.916, "phase_angle": 16.224, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.877, "filter_rmsd": 0.062, "frame": { "rmsd": 0.001, "origin": [ 184.795, 249.675, 269.054 ], "x_axis": [ 0.722, 0.344, -0.600 ], "y_axis": [ -0.390, -0.515, -0.764 ], "z_axis": [ -0.572, 0.785, -0.237 ], "quaternion": [ -0.492, 0.786, -0.014, -0.373 ] } }, { "index": 1464, "index_chain": 1464, "chain_name": "2", "nt_resnum": 1627, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1627", "linked_nts": [ "///2/1626", "///2/1628" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,ribose-zipper", "alpha": -64.698, "beta": 172.328, "gamma": 54.410, "delta": 80.309, "epsilon": -141.068, "zeta": -75.901, "epsilon_zeta": -65.167, "bb_type": "BI", "chi": -162.449, "glyco_bond": "anti", "C5prime_xyz": [ -1.395, 8.781, 0.658 ], "P_xyz": [ 1.176, 9.248, 0.874 ], "form": "A", "ssZp": 4.461, "Dp": 4.664, "splay_angle": 21.799, "splay_distance": 3.565, "splay_ratio": 0.192, "d22": 4.458, "d64": 4.163, "eta": 168.660, "theta": -143.160, "eta_prime": -178.566, "theta_prime": -141.791, "eta_base": -136.739, "theta_base": -127.567, "v0": 1.219, "v1": -23.693, "v2": 35.872, "v3": -36.159, "v4": 22.018, "amplitude": 37.465, "phase_angle": 16.768, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.989, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 184.350, 253.137, 268.610 ], "x_axis": [ 0.459, -0.122, -0.880 ], "y_axis": [ -0.766, -0.555, -0.323 ], "z_axis": [ -0.449, 0.823, -0.348 ], "quaternion": [ -0.373, 0.768, -0.289, -0.433 ] } }, { "index": 1465, "index_chain": 1465, "chain_name": "2", "nt_resnum": 1628, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1628", "linked_nts": [ "///2/1627", "///2/1629" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -75.824, "beta": -173.900, "gamma": 48.317, "delta": 81.488, "epsilon": -157.940, "zeta": -78.045, "epsilon_zeta": -79.895, "bb_type": "BI", "chi": -150.321, "glyco_bond": "anti", "C5prime_xyz": [ -1.432, 8.841, -0.070 ], "P_xyz": [ 1.072, 9.534, 0.288 ], "form": "A", "ssZp": 4.122, "Dp": 4.511, "splay_angle": 22.179, "splay_distance": 3.561, "splay_ratio": 0.192, "d22": 4.519, "d64": 4.462, "eta": 159.175, "theta": -158.603, "eta_prime": 169.127, "theta_prime": -156.995, "eta_base": -165.326, "theta_base": -136.912, "v0": 0.048, "v1": -21.888, "v2": 34.116, "v3": -35.044, "v4": 22.078, "amplitude": 35.980, "phase_angle": 18.527, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.825, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 184.417, 256.533, 267.528 ], "x_axis": [ 0.185, -0.720, -0.669 ], "y_axis": [ -0.952, -0.299, 0.058 ], "z_axis": [ -0.242, 0.626, -0.741 ], "quaternion": [ -0.190, 0.746, -0.560, -0.305 ] } }, { "index": 1466, "index_chain": 1466, "chain_name": "2", "nt_resnum": 1629, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1629", "linked_nts": [ "///2/1628", "///2/1630" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -63.944, "beta": 166.048, "gamma": 58.406, "delta": 80.450, "epsilon": -126.608, "zeta": -86.033, "epsilon_zeta": -40.575, "bb_type": "--", "chi": -154.618, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.817, 0.188 ], "P_xyz": [ 1.210, 9.207, -0.137 ], "form": "A", "ssZp": 4.126, "Dp": 4.721, "splay_angle": 25.858, "splay_distance": 4.155, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 173.978, "theta": -140.057, "eta_prime": -177.943, "theta_prime": -137.082, "eta_base": -150.900, "theta_base": -110.645, "v0": 1.637, "v1": -24.033, "v2": 36.061, "v3": -36.114, "v4": 21.745, "amplitude": 37.548, "phase_angle": 16.173, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.883, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 184.610, 258.996, 264.964 ], "x_axis": [ -0.221, -0.803, -0.553 ], "y_axis": [ -0.963, 0.089, 0.256 ], "z_axis": [ -0.156, 0.589, -0.793 ], "quaternion": [ 0.137, -0.609, 0.725, 0.291 ] } }, { "index": 1467, "index_chain": 1467, "chain_name": "2", "nt_resnum": 1630, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1630", "linked_nts": [ "///2/1629", "///2/1631" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -62.744, "beta": 164.730, "gamma": 55.889, "delta": 82.097, "epsilon": -162.399, "zeta": -75.994, "epsilon_zeta": -86.405, "bb_type": "BI", "chi": -149.805, "glyco_bond": "anti", "C5prime_xyz": [ -1.472, 8.750, -0.089 ], "P_xyz": [ 1.094, 9.159, -0.450 ], "form": "A", "ssZp": 4.146, "Dp": 4.503, "splay_angle": 23.778, "splay_distance": 3.785, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 161.854, "theta": -155.467, "eta_prime": 178.696, "theta_prime": -158.579, "eta_base": -141.727, "theta_base": -143.272, "v0": 1.606, "v1": -23.368, "v2": 34.934, "v3": -34.986, "v4": 21.082, "amplitude": 36.366, "phase_angle": 16.130, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.647, "filter_rmsd": 0.036, "frame": { "rmsd": 0.004, "origin": [ 183.778, 259.618, 260.940 ], "x_axis": [ -0.612, -0.789, 0.041 ], "y_axis": [ -0.717, 0.576, 0.393 ], "z_axis": [ -0.334, 0.211, -0.919 ], "quaternion": [ -0.106, -0.427, 0.881, 0.171 ] } }, { "index": 1468, "index_chain": 1468, "chain_name": "2", "nt_resnum": 1631, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1631", "linked_nts": [ "///2/1630", "///2/1632" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -65.010, "beta": 166.793, "gamma": 62.248, "delta": 81.687, "epsilon": -109.452, "zeta": -60.460, "epsilon_zeta": -48.992, "bb_type": "--", "chi": -156.332, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.767, 0.297 ], "P_xyz": [ 1.122, 9.192, -0.010 ], "form": ".", "ssZp": 4.001, "Dp": 4.704, "splay_angle": 35.505, "splay_distance": 5.595, "splay_ratio": 0.309, "d22": null, "d64": null, "eta": -177.172, "theta": -99.434, "eta_prime": -170.691, "theta_prime": -89.901, "eta_base": -147.739, "theta_base": -48.044, "v0": 1.354, "v1": -23.253, "v2": 35.049, "v3": -35.221, "v4": 21.378, "amplitude": 36.558, "phase_angle": 16.519, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.773, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 183.563, 259.754, 257.163 ], "x_axis": [ -0.848, -0.491, 0.198 ], "y_axis": [ -0.430, 0.857, 0.283 ], "z_axis": [ -0.309, 0.155, -0.938 ], "quaternion": [ -0.133, -0.241, 0.954, 0.115 ] } }, { "index": 1469, "index_chain": 1469, "chain_name": "2", "nt_resnum": 1632, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1632", "linked_nts": [ "///2/1631", "///2/1633" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -65.553, "beta": -167.420, "gamma": 64.878, "delta": 146.432, "epsilon": -145.018, "zeta": 142.802, "epsilon_zeta": 72.180, "bb_type": "--", "chi": -67.793, "glyco_bond": "--", "C5prime_xyz": [ -3.080, 6.854, -3.044 ], "P_xyz": [ -0.805, 7.414, -4.231 ], "form": ".", "ssZp": 1.007, "Dp": 1.836, "splay_angle": 73.337, "splay_distance": 11.529, "splay_ratio": 0.600, "d22": null, "d64": null, "eta": 172.870, "theta": 123.212, "eta_prime": -141.560, "theta_prime": 112.100, "eta_base": -95.914, "theta_base": 145.258, "v0": -20.303, "v1": 34.368, "v2": -34.558, "v3": 23.712, "v4": -2.334, "amplitude": 35.788, "phase_angle": 164.937, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.321, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 178.116, 260.913, 257.697 ], "x_axis": [ -0.605, 0.332, 0.724 ], "y_axis": [ -0.148, 0.846, -0.512 ], "z_axis": [ -0.782, -0.417, -0.463 ], "quaternion": [ -0.441, 0.054, 0.854, -0.272 ] } }, { "index": 1470, "index_chain": 1470, "chain_name": "2", "nt_resnum": 1633, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1633", "linked_nts": [ "///2/1632", "///2/1634" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -94.289, "beta": 166.372, "gamma": 48.985, "delta": 82.174, "epsilon": -138.749, "zeta": -77.229, "epsilon_zeta": -61.521, "bb_type": "BI", "chi": -175.768, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.452, 1.450 ], "P_xyz": [ 1.118, 8.637, 2.061 ], "form": "A", "ssZp": 4.675, "Dp": 4.694, "splay_angle": 23.418, "splay_distance": 3.584, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 172.000, "theta": -138.892, "eta_prime": 160.426, "theta_prime": -136.307, "eta_base": 176.741, "theta_base": -98.776, "v0": 3.629, "v1": -25.001, "v2": 35.692, "v3": -34.604, "v4": 19.548, "amplitude": 36.643, "phase_angle": 13.080, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.669, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 180.460, 258.013, 246.788 ], "x_axis": [ -0.654, -0.188, 0.732 ], "y_axis": [ 0.086, 0.944, 0.319 ], "z_axis": [ -0.751, 0.272, -0.602 ], "quaternion": [ -0.415, -0.029, 0.894, 0.165 ] } }, { "index": 1471, "index_chain": 1471, "chain_name": "2", "nt_resnum": 1634, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1634", "linked_nts": [ "///2/1633", "///2/1635" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor", "alpha": -60.075, "beta": 163.766, "gamma": 55.017, "delta": 82.622, "epsilon": -129.171, "zeta": -58.999, "epsilon_zeta": -70.172, "bb_type": "BI", "chi": -169.511, "glyco_bond": "anti", "C5prime_xyz": [ -1.361, 8.571, 1.098 ], "P_xyz": [ 1.245, 8.784, 1.328 ], "form": ".", "ssZp": 4.581, "Dp": 4.718, "splay_angle": 39.323, "splay_distance": 6.115, "splay_ratio": 0.337, "d22": null, "d64": null, "eta": 169.747, "theta": -112.970, "eta_prime": -174.635, "theta_prime": -107.575, "eta_base": -121.029, "theta_base": -63.912, "v0": 3.454, "v1": -24.749, "v2": 35.477, "v3": -34.463, "v4": 19.584, "amplitude": 36.457, "phase_angle": 13.317, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.896, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 177.057, 257.651, 245.722 ], "x_axis": [ -0.416, 0.483, 0.770 ], "y_axis": [ 0.476, 0.837, -0.268 ], "z_axis": [ -0.775, 0.255, -0.579 ], "quaternion": [ -0.459, 0.285, 0.841, -0.004 ] } }, { "index": 1472, "index_chain": 1472, "chain_name": "2", "nt_resnum": 1635, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1635", "linked_nts": [ "///2/1634", "///2/1636" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,phosphate", "alpha": -59.566, "beta": 162.883, "gamma": 61.789, "delta": 81.313, "epsilon": -107.481, "zeta": -57.085, "epsilon_zeta": -50.396, "bb_type": "--", "chi": -161.952, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.782, 0.644 ], "P_xyz": [ 1.166, 9.156, 0.452 ], "form": ".", "ssZp": 4.209, "Dp": 4.700, "splay_angle": 55.167, "splay_distance": 8.195, "splay_ratio": 0.469, "d22": null, "d64": null, "eta": 176.106, "theta": -101.872, "eta_prime": -155.716, "theta_prime": -98.099, "eta_base": -90.182, "theta_base": -60.738, "v0": 0.909, "v1": -23.091, "v2": 35.246, "v3": -35.682, "v4": 21.933, "amplitude": 36.899, "phase_angle": 17.218, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.671, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 173.202, 262.308, 246.643 ], "x_axis": [ 0.224, 0.969, 0.108 ], "y_axis": [ 0.547, -0.033, -0.836 ], "z_axis": [ -0.807, 0.247, -0.537 ], "quaternion": [ -0.404, 0.670, 0.566, -0.261 ] } }, { "index": 1473, "index_chain": 1473, "chain_name": "2", "nt_resnum": 1636, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1636", "linked_nts": [ "///2/1635", "///2/1637" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -64.879, "beta": -121.686, "gamma": 26.875, "delta": 142.187, "epsilon": -136.126, "zeta": 96.361, "epsilon_zeta": 127.513, "bb_type": "--", "chi": 81.029, "glyco_bond": "syn", "C5prime_xyz": [ -5.053, 4.962, 2.197 ], "P_xyz": [ -7.069, 3.452, 1.474 ], "form": ".", "ssZp": -1.638, "Dp": 1.741, "splay_angle": 101.066, "splay_distance": 15.200, "splay_ratio": 0.772, "d22": null, "d64": null, "eta": -175.570, "theta": 65.888, "eta_prime": -154.697, "theta_prime": 73.685, "eta_base": -119.935, "theta_base": 69.515, "v0": -25.058, "v1": 36.937, "v2": -34.033, "v3": 20.516, "v4": 2.638, "amplitude": 36.929, "phase_angle": 157.159, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.041, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 173.643, 267.857, 240.628 ], "x_axis": [ -0.428, 0.727, 0.537 ], "y_axis": [ -0.902, -0.383, -0.201 ], "z_axis": [ 0.060, -0.570, 0.819 ], "quaternion": [ 0.502, 0.184, -0.238, 0.811 ] } }, { "index": 1474, "index_chain": 1474, "chain_name": "2", "nt_resnum": 1637, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1637", "linked_nts": [ "///2/1636", "///2/1638" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -108.415, "beta": -168.206, "gamma": 45.699, "delta": 145.889, "epsilon": -112.134, "zeta": 64.809, "epsilon_zeta": 183.057, "bb_type": "--", "chi": -113.555, "glyco_bond": "anti", "C5prime_xyz": [ -2.117, 8.401, -1.541 ], "P_xyz": [ 0.022, 9.769, -0.869 ], "form": ".", "ssZp": 1.149, "Dp": 1.208, "splay_angle": 38.337, "splay_distance": 6.323, "splay_ratio": 0.366, "d22": null, "d64": null, "eta": 176.049, "theta": 96.607, "eta_prime": -171.111, "theta_prime": 83.398, "eta_base": -155.208, "theta_base": 85.328, "v0": -22.165, "v1": 35.913, "v2": -35.173, "v3": 23.318, "v4": -0.936, "amplitude": 36.850, "phase_angle": 162.648, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "0b", "suiteness": 0.256, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 165.699, 254.901, 240.921 ], "x_axis": [ -0.278, 0.739, 0.613 ], "y_axis": [ 0.270, 0.673, -0.689 ], "z_axis": [ -0.922, -0.026, -0.387 ], "quaternion": [ 0.502, -0.330, -0.765, 0.234 ] } }, { "index": 1475, "index_chain": 1475, "chain_name": "2", "nt_resnum": 1638, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1638", "linked_nts": [ "///2/1637", "///2/1639" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": 145.941, "beta": -139.992, "gamma": 129.861, "delta": 84.115, "epsilon": -108.311, "zeta": -175.880, "epsilon_zeta": 67.568, "bb_type": "BII", "chi": -77.121, "glyco_bond": "--", "C5prime_xyz": [ -2.835, 6.683, -3.302 ], "P_xyz": [ -1.762, 4.894, -4.892 ], "form": ".", "ssZp": -1.676, "Dp": 4.680, "splay_angle": 105.442, "splay_distance": 15.420, "splay_ratio": 0.796, "d22": null, "d64": null, "eta": 161.199, "theta": 135.121, "eta_prime": 164.833, "theta_prime": 147.512, "eta_base": 158.447, "theta_base": 169.830, "v0": 2.318, "v1": -23.074, "v2": 33.847, "v3": -33.464, "v4": 19.681, "amplitude": 35.028, "phase_angle": 14.918, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 171.151, 254.622, 237.731 ], "x_axis": [ -0.290, -0.938, 0.189 ], "y_axis": [ 0.267, -0.269, -0.925 ], "z_axis": [ 0.919, -0.218, 0.329 ], "quaternion": [ -0.438, 0.403, -0.416, 0.687 ] } }, { "index": 1476, "index_chain": 1476, "chain_name": "2", "nt_resnum": 1639, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1639", "linked_nts": [ "///2/1638", "///2/1640" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -67.481, "beta": 160.588, "gamma": 42.807, "delta": 80.716, "epsilon": -137.744, "zeta": -78.267, "epsilon_zeta": -59.477, "bb_type": "BI", "chi": -179.744, "glyco_bond": "anti", "C5prime_xyz": [ -1.641, 8.515, 1.637 ], "P_xyz": [ 0.811, 8.759, 2.535 ], "form": "A", "ssZp": 4.632, "Dp": 4.650, "splay_angle": 23.458, "splay_distance": 3.567, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": -166.645, "theta": -140.796, "eta_prime": 176.635, "theta_prime": -137.996, "eta_base": 170.899, "theta_base": -96.769, "v0": 0.637, "v1": -22.768, "v2": 34.975, "v3": -35.599, "v4": 22.046, "amplitude": 36.702, "phase_angle": 17.646, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.344, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 181.387, 250.960, 226.794 ], "x_axis": [ -0.108, -0.337, 0.935 ], "y_axis": [ -0.814, 0.570, 0.112 ], "z_axis": [ -0.570, -0.750, -0.336 ], "quaternion": [ 0.530, 0.406, -0.709, 0.225 ] } }, { "index": 1477, "index_chain": 1477, "chain_name": "2", "nt_resnum": 1640, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1640", "linked_nts": [ "///2/1639", "///2/1641" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -65.718, "beta": 168.505, "gamma": 52.909, "delta": 81.822, "epsilon": -124.868, "zeta": -59.900, "epsilon_zeta": -64.968, "bb_type": "--", "chi": -169.989, "glyco_bond": "anti", "C5prime_xyz": [ -1.180, 8.511, 1.119 ], "P_xyz": [ 1.428, 8.633, 1.385 ], "form": ".", "ssZp": 4.634, "Dp": 4.788, "splay_angle": 41.099, "splay_distance": 6.245, "splay_ratio": 0.351, "d22": null, "d64": null, "eta": 166.699, "theta": -112.446, "eta_prime": 179.742, "theta_prime": -105.391, "eta_base": -124.938, "theta_base": -62.951, "v0": 5.666, "v1": -27.036, "v2": 37.001, "v3": -34.758, "v4": 18.364, "amplitude": 37.591, "phase_angle": 10.166, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 180.116, 247.627, 226.841 ], "x_axis": [ -0.640, 0.171, 0.749 ], "y_axis": [ -0.508, 0.637, -0.579 ], "z_axis": [ -0.577, -0.752, -0.320 ], "quaternion": [ -0.411, -0.105, 0.806, -0.413 ] } }, { "index": 1478, "index_chain": 1478, "chain_name": "2", "nt_resnum": 1641, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1641", "linked_nts": [ "///2/1640", "///2/1642" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -61.856, "beta": 156.478, "gamma": 67.604, "delta": 80.936, "epsilon": -143.035, "zeta": -72.382, "epsilon_zeta": -70.653, "bb_type": "BI", "chi": -174.362, "glyco_bond": "anti", "C5prime_xyz": [ -1.430, 8.485, 1.352 ], "P_xyz": [ 1.155, 8.840, 1.083 ], "form": "A", "ssZp": 4.696, "Dp": 4.706, "splay_angle": 26.615, "splay_distance": 4.132, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 163.420, "theta": -137.915, "eta_prime": -161.665, "theta_prime": -139.138, "eta_base": -87.957, "theta_base": -110.909, "v0": 3.960, "v1": -25.980, "v2": 36.918, "v3": -35.634, "v4": 19.979, "amplitude": 37.849, "phase_angle": 12.732, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.461, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 174.033, 246.972, 228.091 ], "x_axis": [ -0.736, 0.654, -0.172 ], "y_axis": [ 0.341, 0.139, -0.930 ], "z_axis": [ -0.584, -0.743, -0.326 ], "quaternion": [ -0.139, 0.335, 0.742, -0.564 ] } }, { "index": 1479, "index_chain": 1479, "chain_name": "2", "nt_resnum": 1642, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1642", "linked_nts": [ "///2/1641", "///2/1643" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.767, "beta": 167.938, "gamma": 61.069, "delta": 81.106, "epsilon": -167.448, "zeta": -85.294, "epsilon_zeta": -82.154, "bb_type": "BI", "chi": -170.420, "glyco_bond": "anti", "C5prime_xyz": [ -1.518, 8.622, 1.134 ], "P_xyz": [ 1.059, 9.042, 1.365 ], "form": ".", "ssZp": 4.453, "Dp": 4.472, "splay_angle": 33.388, "splay_distance": 5.163, "splay_ratio": 0.290, "d22": 5.719, "d64": 6.144, "eta": 169.430, "theta": -169.686, "eta_prime": -170.013, "theta_prime": -171.125, "eta_base": -118.898, "theta_base": -170.576, "v0": 1.763, "v1": -23.825, "v2": 35.548, "v3": -35.509, "v4": 21.295, "amplitude": 36.966, "phase_angle": 15.925, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.881, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 170.281, 245.244, 227.995 ], "x_axis": [ -0.364, 0.599, -0.713 ], "y_axis": [ 0.737, -0.283, -0.614 ], "z_axis": [ -0.570, -0.749, -0.338 ], "quaternion": [ 0.060, 0.561, 0.596, -0.572 ] } }, { "index": 1480, "index_chain": 1480, "chain_name": "2", "nt_resnum": 1643, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1643", "linked_nts": [ "///2/1642", "///2/1644" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.301, "beta": -178.326, "gamma": 55.433, "delta": 83.481, "epsilon": -152.773, "zeta": -74.777, "epsilon_zeta": -77.996, "bb_type": "BI", "chi": -165.810, "glyco_bond": "anti", "C5prime_xyz": [ -1.390, 8.691, 0.890 ], "P_xyz": [ 1.109, 9.060, 1.608 ], "form": "A", "ssZp": 4.395, "Dp": 4.498, "splay_angle": 21.398, "splay_distance": 3.406, "splay_ratio": 0.186, "d22": 4.631, "d64": 4.433, "eta": -177.372, "theta": -148.621, "eta_prime": -176.733, "theta_prime": -147.669, "eta_base": -173.900, "theta_base": -126.080, "v0": 0.907, "v1": -21.808, "v2": 33.212, "v3": -33.628, "v4": 20.655, "amplitude": 34.760, "phase_angle": 17.162, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.684, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 167.690, 241.966, 231.028 ], "x_axis": [ -0.199, 0.567, -0.800 ], "y_axis": [ 0.792, -0.388, -0.471 ], "z_axis": [ -0.577, -0.727, -0.372 ], "quaternion": [ 0.102, 0.625, 0.544, -0.551 ] } }, { "index": 1481, "index_chain": 1481, "chain_name": "2", "nt_resnum": 1644, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1644", "linked_nts": [ "///2/1643", "///2/1645" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -67.507, "beta": 176.409, "gamma": 50.564, "delta": 81.665, "epsilon": -147.367, "zeta": -76.847, "epsilon_zeta": -70.520, "bb_type": "BI", "chi": -157.931, "glyco_bond": "anti", "C5prime_xyz": [ -1.264, 8.783, 0.402 ], "P_xyz": [ 1.312, 9.177, 0.702 ], "form": "A", "ssZp": 4.348, "Dp": 4.622, "splay_angle": 26.556, "splay_distance": 4.192, "splay_ratio": 0.230, "d22": 4.441, "d64": 4.600, "eta": 166.433, "theta": -146.667, "eta_prime": 177.136, "theta_prime": -143.183, "eta_base": -149.407, "theta_base": -113.459, "v0": 2.014, "v1": -23.797, "v2": 35.308, "v3": -35.103, "v4": 20.883, "amplitude": 36.644, "phase_angle": 15.519, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 164.726, 240.340, 230.609 ], "x_axis": [ 0.271, 0.320, -0.908 ], "y_axis": [ 0.734, -0.679, -0.020 ], "z_axis": [ -0.623, -0.661, -0.419 ], "quaternion": [ 0.208, 0.770, 0.342, -0.497 ] } }, { "index": 1482, "index_chain": 1482, "chain_name": "2", "nt_resnum": 1645, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1645", "linked_nts": [ "///2/1644", "///2/1646" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -57.590, "beta": 162.919, "gamma": 60.646, "delta": 81.904, "epsilon": -141.749, "zeta": -111.667, "epsilon_zeta": -30.083, "bb_type": "BI", "chi": -159.004, "glyco_bond": "anti", "C5prime_xyz": [ -1.306, 8.780, 0.466 ], "P_xyz": [ 1.286, 9.077, 0.216 ], "form": ".", "ssZp": 4.362, "Dp": 4.648, "splay_angle": 51.987, "splay_distance": 8.058, "splay_ratio": 0.438, "d22": 7.634, "d64": 8.772, "eta": 175.359, "theta": -170.801, "eta_prime": -169.038, "theta_prime": -164.852, "eta_base": -127.329, "theta_base": -152.478, "v0": 1.710, "v1": -23.462, "v2": 35.049, "v3": -35.043, "v4": 21.040, "amplitude": 36.459, "phase_angle": 15.991, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.847, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 162.101, 238.673, 227.796 ], "x_axis": [ 0.646, -0.103, -0.756 ], "y_axis": [ 0.440, -0.759, 0.480 ], "z_axis": [ -0.624, -0.643, -0.445 ], "quaternion": [ 0.332, 0.844, 0.100, -0.409 ] } }, { "index": 1483, "index_chain": 1483, "chain_name": "2", "nt_resnum": 1646, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1646", "linked_nts": [ "///2/1645", "///2/1647" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -43.863, "beta": 148.487, "gamma": 84.742, "delta": 81.785, "epsilon": -136.598, "zeta": -174.277, "epsilon_zeta": 37.680, "bb_type": "--", "chi": -148.638, "glyco_bond": "anti", "C5prime_xyz": [ -1.438, 8.829, -0.167 ], "P_xyz": [ 0.697, 9.072, -1.665 ], "form": ".", "ssZp": 3.959, "Dp": 4.650, "splay_angle": 78.434, "splay_distance": 11.677, "splay_ratio": 0.633, "d22": null, "d64": null, "eta": -150.631, "theta": 118.612, "eta_prime": -146.556, "theta_prime": 129.108, "eta_base": -142.634, "theta_base": 122.011, "v0": 0.483, "v1": -22.503, "v2": 34.689, "v3": -35.369, "v4": 22.031, "amplitude": 36.447, "phase_angle": 17.866, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 155.286, 234.893, 225.750 ], "x_axis": [ 0.401, -0.571, -0.716 ], "y_axis": [ 0.447, -0.560, 0.697 ], "z_axis": [ -0.799, -0.600, 0.031 ], "quaternion": [ 0.467, 0.695, -0.045, -0.545 ] } }, { "index": 1484, "index_chain": 1484, "chain_name": "2", "nt_resnum": 1647, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1647", "linked_nts": [ "///2/1646", "///2/1648" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,junction-loop,phosphate", "alpha": -63.195, "beta": 148.756, "gamma": 52.984, "delta": 147.216, "epsilon": -89.407, "zeta": 140.292, "epsilon_zeta": 130.301, "bb_type": "BII", "chi": -128.847, "glyco_bond": "anti", "C5prime_xyz": [ -1.919, 8.654, -0.736 ], "P_xyz": [ 0.613, 8.985, -0.112 ], "form": ".", "ssZp": 0.588, "Dp": 0.633, "splay_angle": 42.912, "splay_distance": 7.649, "splay_ratio": 0.367, "d22": null, "d64": null, "eta": -157.778, "theta": -174.859, "eta_prime": -155.876, "theta_prime": 151.616, "eta_base": 175.519, "theta_base": 169.736, "v0": -21.687, "v1": 36.065, "v2": -35.846, "v3": 24.274, "v4": -1.826, "amplitude": 37.292, "phase_angle": 163.991, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.543, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 150.424, 236.453, 236.252 ], "x_axis": [ 0.156, 0.383, -0.910 ], "y_axis": [ 0.476, -0.837, -0.271 ], "z_axis": [ -0.866, -0.391, -0.313 ], "quaternion": [ 0.040, 0.759, 0.283, -0.585 ] } }, { "index": 1485, "index_chain": 1485, "chain_name": "2", "nt_resnum": 1648, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1648", "linked_nts": [ "///2/1647", "///2/1649" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop", "alpha": 46.444, "beta": -102.806, "gamma": -86.434, "delta": 147.953, "epsilon": -163.561, "zeta": 160.535, "epsilon_zeta": 35.903, "bb_type": "--", "chi": -101.230, "glyco_bond": "anti", "C5prime_xyz": [ -2.399, 8.126, -2.048 ], "P_xyz": [ -3.569, 9.325, -4.065 ], "form": ".", "ssZp": 2.033, "Dp": 2.038, "splay_angle": 47.982, "splay_distance": 7.544, "splay_ratio": 0.408, "d22": null, "d64": null, "eta": -70.037, "theta": 60.875, "eta_prime": -94.632, "theta_prime": 81.974, "eta_base": -94.791, "theta_base": 100.921, "v0": -22.277, "v1": 36.995, "v2": -36.703, "v3": 24.797, "v4": -1.820, "amplitude": 38.206, "phase_angle": 163.877, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 148.513, 236.197, 243.653 ], "x_axis": [ -0.700, -0.247, 0.670 ], "y_axis": [ 0.434, -0.892, 0.125 ], "z_axis": [ 0.567, 0.378, 0.732 ], "quaternion": [ -0.187, 0.339, 0.138, 0.912 ] } }, { "index": 1486, "index_chain": 1486, "chain_name": "2", "nt_resnum": 1649, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1649", "linked_nts": [ "///2/1648", "///2/1650" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate", "alpha": -66.063, "beta": 149.595, "gamma": 34.523, "delta": 87.233, "epsilon": -117.210, "zeta": -123.534, "epsilon_zeta": 6.323, "bb_type": "--", "chi": -174.946, "glyco_bond": "anti", "C5prime_xyz": [ -1.573, 8.591, 1.398 ], "P_xyz": [ 0.748, 8.470, 2.635 ], "form": ".", "ssZp": 4.197, "Dp": 4.375, "splay_angle": 35.726, "splay_distance": 5.580, "splay_ratio": 0.312, "d22": null, "d64": null, "eta": 172.756, "theta": -159.403, "eta_prime": 157.448, "theta_prime": -151.466, "eta_base": 156.910, "theta_base": -129.421, "v0": -1.996, "v1": -17.219, "v2": 28.689, "v3": -30.670, "v4": 20.625, "amplitude": 30.991, "phase_angle": 22.222, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "#a", "suiteness": 0.776, "filter_rmsd": 0.108, "frame": { "rmsd": 0.010, "origin": [ 153.270, 238.406, 238.231 ], "x_axis": [ -0.788, -0.131, 0.601 ], "y_axis": [ 0.316, -0.924, 0.213 ], "z_axis": [ 0.528, 0.358, 0.770 ], "quaternion": [ -0.120, 0.303, 0.153, 0.933 ] } }, { "index": 1487, "index_chain": 1487, "chain_name": "2", "nt_resnum": 1650, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1650", "linked_nts": [ "///2/1649", "///2/1651" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate", "alpha": -52.521, "beta": 137.136, "gamma": 58.070, "delta": 83.882, "epsilon": -141.531, "zeta": -44.633, "epsilon_zeta": -96.898, "bb_type": "BI", "chi": -166.605, "glyco_bond": "anti", "C5prime_xyz": [ -1.123, 8.523, 0.981 ], "P_xyz": [ 1.431, 8.283, 0.448 ], "form": ".", "ssZp": 4.566, "Dp": 4.686, "splay_angle": 36.642, "splay_distance": 5.596, "splay_ratio": 0.315, "d22": null, "d64": null, "eta": 171.588, "theta": -104.049, "eta_prime": -178.579, "theta_prime": -107.053, "eta_base": -151.751, "theta_base": -60.331, "v0": 6.380, "v1": -26.978, "v2": 36.194, "v3": -33.502, "v4": 17.152, "amplitude": 36.628, "phase_angle": 8.825, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.446, "filter_rmsd": 0.037, "frame": { "rmsd": 0.005, "origin": [ 157.548, 241.238, 240.425 ], "x_axis": [ -0.502, -0.411, 0.761 ], "y_axis": [ 0.478, -0.865, -0.152 ], "z_axis": [ 0.721, 0.287, 0.630 ], "quaternion": [ -0.257, 0.428, 0.039, 0.866 ] } }, { "index": 1488, "index_chain": 1488, "chain_name": "2", "nt_resnum": 1651, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1651", "linked_nts": [ "///2/1650", "///2/1652" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -76.519, "beta": 168.620, "gamma": 61.565, "delta": 80.682, "epsilon": -140.867, "zeta": -82.347, "epsilon_zeta": -58.520, "bb_type": "BI", "chi": -168.298, "glyco_bond": "anti", "C5prime_xyz": [ -1.267, 8.594, 1.022 ], "P_xyz": [ 1.347, 8.858, 1.056 ], "form": "A", "ssZp": 4.610, "Dp": 4.703, "splay_angle": 22.810, "splay_distance": 3.641, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 157.561, "theta": -146.861, "eta_prime": -168.502, "theta_prime": -147.951, "eta_base": -84.740, "theta_base": -133.884, "v0": 3.909, "v1": -25.868, "v2": 36.852, "v3": -35.607, "v4": 19.979, "amplitude": 37.794, "phase_angle": 12.819, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.472, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 158.242, 238.413, 245.206 ], "x_axis": [ 0.214, -0.964, 0.158 ], "y_axis": [ 0.720, 0.046, -0.693 ], "z_axis": [ 0.661, 0.262, 0.703 ], "quaternion": [ 0.701, -0.341, 0.179, -0.601 ] } }, { "index": 1489, "index_chain": 1489, "chain_name": "2", "nt_resnum": 1652, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1652", "linked_nts": [ "///2/1651", "///2/1653" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -55.993, "beta": 171.031, "gamma": 41.153, "delta": 78.579, "epsilon": -140.722, "zeta": -62.720, "epsilon_zeta": -78.002, "bb_type": "BI", "chi": -170.398, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.670, 1.110 ], "P_xyz": [ 0.941, 9.164, 1.821 ], "form": ".", "ssZp": 4.640, "Dp": 4.704, "splay_angle": 25.073, "splay_distance": 3.997, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 163.592, "theta": -132.545, "eta_prime": 171.818, "theta_prime": -128.255, "eta_base": -159.941, "theta_base": -79.554, "v0": 2.019, "v1": -25.149, "v2": 37.482, "v3": -37.313, "v4": 22.243, "amplitude": 38.932, "phase_angle": 15.683, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.664, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 158.912, 238.988, 248.738 ], "x_axis": [ 0.285, -0.868, -0.406 ], "y_axis": [ 0.544, 0.496, -0.677 ], "z_axis": [ 0.789, -0.028, 0.613 ], "quaternion": [ 0.774, -0.210, 0.386, -0.456 ] } }, { "index": 1490, "index_chain": 1490, "chain_name": "2", "nt_resnum": 1653, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1653", "linked_nts": [ "///2/1652", "///2/1654" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -62.792, "beta": 171.407, "gamma": 53.038, "delta": 77.903, "epsilon": -119.730, "zeta": -106.865, "epsilon_zeta": -12.865, "bb_type": "--", "chi": -160.729, "glyco_bond": "anti", "C5prime_xyz": [ -1.497, 8.756, 0.549 ], "P_xyz": [ 1.051, 9.348, 0.629 ], "form": "A", "ssZp": 4.305, "Dp": 4.765, "splay_angle": 25.490, "splay_distance": 4.036, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 169.227, "theta": -160.038, "eta_prime": -172.443, "theta_prime": -155.455, "eta_base": -108.037, "theta_base": -138.724, "v0": 1.667, "v1": -25.003, "v2": 37.611, "v3": -37.686, "v4": 22.680, "amplitude": 39.172, "phase_angle": 16.230, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 161.655, 236.136, 249.301 ], "x_axis": [ 0.567, -0.219, -0.794 ], "y_axis": [ 0.282, 0.957, -0.064 ], "z_axis": [ 0.774, -0.187, 0.604 ], "quaternion": [ 0.884, 0.035, 0.443, -0.142 ] } }, { "index": 1491, "index_chain": 1491, "chain_name": "2", "nt_resnum": 1654, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1654", "linked_nts": [ "///2/1653", "///2/1655" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate", "alpha": -59.625, "beta": 131.074, "gamma": 72.905, "delta": 80.610, "epsilon": -157.165, "zeta": -75.658, "epsilon_zeta": -81.507, "bb_type": "BI", "chi": -175.466, "glyco_bond": "anti", "C5prime_xyz": [ -1.820, 8.653, 1.380 ], "P_xyz": [ 0.686, 9.082, 0.770 ], "form": "A", "ssZp": 4.437, "Dp": 4.482, "splay_angle": 25.025, "splay_distance": 3.882, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 162.284, "theta": -148.703, "eta_prime": 178.376, "theta_prime": -156.481, "eta_base": -153.874, "theta_base": -136.917, "v0": -1.626, "v1": -21.006, "v2": 34.302, "v3": -36.213, "v4": 23.862, "amplitude": 36.762, "phase_angle": 21.081, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.623, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 164.325, 234.360, 251.752 ], "x_axis": [ 0.355, 0.173, -0.919 ], "y_axis": [ 0.061, 0.976, 0.207 ], "z_axis": [ 0.933, -0.130, 0.336 ], "quaternion": [ 0.816, 0.103, 0.567, 0.034 ] } }, { "index": 1492, "index_chain": 1492, "chain_name": "2", "nt_resnum": 1655, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1655", "linked_nts": [ "///2/1654", "///2/1656" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate", "alpha": -62.890, "beta": -176.347, "gamma": 49.463, "delta": 83.483, "epsilon": -168.859, "zeta": -83.089, "epsilon_zeta": -85.770, "bb_type": "BI", "chi": -161.929, "glyco_bond": "anti", "C5prime_xyz": [ -1.117, 8.705, 0.687 ], "P_xyz": [ 1.396, 8.916, 1.416 ], "form": ".", "ssZp": 4.332, "Dp": 4.426, "splay_angle": 27.746, "splay_distance": 4.590, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": 173.405, "theta": -137.940, "eta_prime": -176.329, "theta_prime": -145.108, "eta_base": -140.761, "theta_base": -134.988, "v0": 3.126, "v1": -23.672, "v2": 34.103, "v3": -33.278, "v4": 19.042, "amplitude": 35.097, "phase_angle": 13.667, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.894, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 167.271, 231.979, 252.599 ], "x_axis": [ 0.345, 0.689, -0.637 ], "y_axis": [ -0.185, 0.715, 0.674 ], "z_axis": [ 0.920, -0.115, 0.374 ], "quaternion": [ 0.780, 0.253, 0.499, 0.280 ] } }, { "index": 1493, "index_chain": 1493, "chain_name": "2", "nt_resnum": 1656, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1656", "linked_nts": [ "///2/1655", "///2/1657" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 165.671, "beta": -155.874, "gamma": 165.466, "delta": 82.001, "epsilon": -122.397, "zeta": -91.406, "epsilon_zeta": -30.991, "bb_type": "--", "chi": 169.408, "glyco_bond": "anti", "C5prime_xyz": [ -1.598, 8.161, 2.205 ], "P_xyz": [ 0.467, 9.690, 1.708 ], "form": "A", "ssZp": 4.668, "Dp": 4.715, "splay_angle": 24.434, "splay_distance": 3.755, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 168.209, "theta": -159.596, "eta_prime": 178.777, "theta_prime": -155.645, "eta_base": -154.741, "theta_base": -124.728, "v0": 3.166, "v1": -24.485, "v2": 35.334, "v3": -34.518, "v4": 19.768, "amplitude": 36.378, "phase_angle": 13.763, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.562, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 171.063, 229.399, 252.771 ], "x_axis": [ 0.146, 0.897, -0.417 ], "y_axis": [ -0.400, 0.440, 0.804 ], "z_axis": [ 0.905, 0.049, 0.423 ], "quaternion": [ 0.709, 0.266, 0.466, 0.457 ] } }, { "index": 1494, "index_chain": 1494, "chain_name": "2", "nt_resnum": 1657, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1657", "linked_nts": [ "///2/1656", "///2/1658" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.323, "beta": 160.741, "gamma": 50.362, "delta": 82.829, "epsilon": -148.338, "zeta": -65.899, "epsilon_zeta": -82.439, "bb_type": "BI", "chi": -175.747, "glyco_bond": "anti", "C5prime_xyz": [ -1.528, 8.563, 1.446 ], "P_xyz": [ 1.012, 8.749, 2.065 ], "form": "A", "ssZp": 4.525, "Dp": 4.566, "splay_angle": 22.369, "splay_distance": 3.537, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 164.365, "theta": -134.773, "eta_prime": 179.161, "theta_prime": -135.458, "eta_base": -137.147, "theta_base": -101.562, "v0": 1.326, "v1": -22.568, "v2": 34.009, "v3": -34.212, "v4": 20.755, "amplitude": 35.476, "phase_angle": 16.534, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.469, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 174.806, 229.249, 252.520 ], "x_axis": [ -0.227, 0.968, 0.110 ], "y_axis": [ -0.461, -0.206, 0.863 ], "z_axis": [ 0.858, 0.145, 0.493 ], "quaternion": [ 0.515, 0.349, 0.363, 0.694 ] } }, { "index": 1495, "index_chain": 1495, "chain_name": "2", "nt_resnum": 1658, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1658", "linked_nts": [ "///2/1657", "///2/1659" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": -68.790, "beta": -172.295, "gamma": 41.659, "delta": 81.648, "epsilon": -131.740, "zeta": -82.249, "epsilon_zeta": -49.492, "bb_type": "BI", "chi": -160.884, "glyco_bond": "anti", "C5prime_xyz": [ -1.129, 8.714, 0.606 ], "P_xyz": [ 1.329, 9.078, 1.452 ], "form": "A", "ssZp": 4.394, "Dp": 4.726, "splay_angle": 26.959, "splay_distance": 4.295, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 165.836, "theta": -139.916, "eta_prime": 177.485, "theta_prime": -131.739, "eta_base": -133.567, "theta_base": -98.540, "v0": 3.923, "v1": -25.354, "v2": 36.033, "v3": -34.764, "v4": 19.446, "amplitude": 36.932, "phase_angle": 12.671, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.707, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 177.699, 231.203, 253.093 ], "x_axis": [ -0.592, 0.537, 0.601 ], "y_axis": [ -0.160, -0.809, 0.565 ], "z_axis": [ 0.790, 0.238, 0.565 ], "quaternion": [ 0.202, 0.404, 0.233, 0.861 ] } }, { "index": 1496, "index_chain": 1496, "chain_name": "2", "nt_resnum": 1659, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1659", "linked_nts": [ "///2/1658", "///2/1660" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -47.047, "beta": 156.924, "gamma": 54.565, "delta": 80.596, "epsilon": -106.263, "zeta": -49.775, "epsilon_zeta": -56.488, "bb_type": "--", "chi": -155.882, "glyco_bond": "anti", "C5prime_xyz": [ -1.602, 8.797, 0.266 ], "P_xyz": [ 0.954, 9.252, -0.053 ], "form": ".", "ssZp": 3.940, "Dp": 4.687, "splay_angle": 63.833, "splay_distance": 9.300, "splay_ratio": 0.536, "d22": 4.222, "d64": 4.204, "eta": -177.932, "theta": -60.739, "eta_prime": -163.094, "theta_prime": -76.933, "eta_base": -123.685, "theta_base": -23.509, "v0": -0.211, "v1": -22.345, "v2": 35.079, "v3": -36.180, "v4": 22.971, "amplitude": 37.084, "phase_angle": 18.925, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.586, "filter_rmsd": 0.101, "frame": { "rmsd": 0.004, "origin": [ 179.522, 233.617, 256.141 ], "x_axis": [ -0.642, -0.050, 0.765 ], "y_axis": [ 0.274, -0.947, 0.168 ], "z_axis": [ 0.716, 0.317, 0.622 ], "quaternion": [ -0.090, 0.413, 0.135, 0.896 ] } }, { "index": 1497, "index_chain": 1497, "chain_name": "2", "nt_resnum": 1660, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1660", "linked_nts": [ "///2/1659", "///2/1661" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 162.524, "beta": 176.712, "gamma": 163.053, "delta": 80.458, "epsilon": -153.297, "zeta": -122.195, "epsilon_zeta": -31.102, "bb_type": "BI", "chi": 45.240, "glyco_bond": "syn", "C5prime_xyz": [ -5.524, 3.968, 0.929 ], "P_xyz": [ -6.326, 3.059, 3.250 ], "form": ".", "ssZp": -3.498, "Dp": 4.493, "splay_angle": 137.702, "splay_distance": 15.602, "splay_ratio": 0.933, "d22": null, "d64": null, "eta": 128.221, "theta": 159.363, "eta_prime": 165.886, "theta_prime": 132.002, "eta_base": -106.142, "theta_base": 63.655, "v0": -1.773, "v1": -20.535, "v2": 33.717, "v3": -35.719, "v4": 23.615, "amplitude": 36.202, "phase_angle": 21.354, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.069, "frame": { "rmsd": 0.008, "origin": [ 179.166, 225.647, 260.921 ], "x_axis": [ -0.958, 0.287, -0.016 ], "y_axis": [ 0.284, 0.953, 0.101 ], "z_axis": [ 0.044, 0.092, -0.995 ], "quaternion": [ 0.015, 0.145, 0.988, 0.049 ] } }, { "index": 1498, "index_chain": 1498, "chain_name": "2", "nt_resnum": 1661, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1661", "linked_nts": [ "///2/1660", "///2/1662" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart", "alpha": 154.932, "beta": -176.930, "gamma": 50.344, "delta": 82.941, "epsilon": -163.131, "zeta": -64.459, "epsilon_zeta": -98.672, "bb_type": "BI", "chi": 169.135, "glyco_bond": "--", "C5prime_xyz": [ -1.690, 8.090, 2.224 ], "P_xyz": [ 0.513, 7.983, 3.646 ], "form": ".", "ssZp": 4.226, "Dp": 4.502, "splay_angle": 25.812, "splay_distance": 3.761, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 28.614, "theta": -122.264, "eta_prime": 34.032, "theta_prime": -119.345, "eta_base": 68.445, "theta_base": -69.450, "v0": 2.818, "v1": -23.926, "v2": 34.709, "v3": -34.020, "v4": 19.707, "amplitude": 35.799, "phase_angle": 14.176, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.010, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 190.909, 234.999, 265.174 ], "x_axis": [ 0.576, -0.490, -0.654 ], "y_axis": [ -0.371, -0.870, 0.325 ], "z_axis": [ -0.728, 0.056, -0.683 ], "quaternion": [ 0.076, 0.884, -0.243, -0.391 ] } }, { "index": 1499, "index_chain": 1499, "chain_name": "2", "nt_resnum": 1662, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1662", "linked_nts": [ "///2/1661", "///2/1663" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -140.856, "beta": -128.390, "gamma": 84.947, "delta": 83.119, "epsilon": -107.468, "zeta": -75.430, "epsilon_zeta": -32.038, "bb_type": "--", "chi": -157.886, "glyco_bond": "anti", "C5prime_xyz": [ -1.359, 8.720, 0.406 ], "P_xyz": [ 1.222, 8.464, 0.834 ], "form": ".", "ssZp": 4.044, "Dp": 4.706, "splay_angle": 20.509, "splay_distance": 3.433, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 166.675, "theta": -97.710, "eta_prime": -178.217, "theta_prime": -99.754, "eta_base": -117.516, "theta_base": -129.266, "v0": 2.470, "v1": -23.769, "v2": 34.822, "v3": -34.341, "v4": 20.133, "amplitude": 36.010, "phase_angle": 14.760, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 189.780, 234.539, 261.615 ], "x_axis": [ 0.006, -0.998, -0.054 ], "y_axis": [ -0.702, -0.043, 0.711 ], "z_axis": [ -0.713, 0.034, -0.701 ], "quaternion": [ 0.256, 0.662, -0.642, -0.290 ] } }, { "index": 1500, "index_chain": 1500, "chain_name": "2", "nt_resnum": 1663, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1663", "linked_nts": [ "///2/1662", "///2/1664" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,hairpin-loop", "alpha": -87.733, "beta": -168.239, "gamma": 41.506, "delta": 144.506, "epsilon": -108.059, "zeta": 132.654, "epsilon_zeta": 119.287, "bb_type": "BII", "chi": -102.995, "glyco_bond": "anti", "C5prime_xyz": [ -2.198, 8.129, -2.034 ], "P_xyz": [ -0.014, 9.563, -1.795 ], "form": ".", "ssZp": 0.972, "Dp": 1.210, "splay_angle": 56.123, "splay_distance": 9.141, "splay_ratio": 0.474, "d22": null, "d64": null, "eta": 148.081, "theta": 135.277, "eta_prime": 177.846, "theta_prime": 138.065, "eta_base": 163.724, "theta_base": 164.887, "v0": -21.563, "v1": 34.747, "v2": -33.972, "v3": 22.409, "v4": -0.722, "amplitude": 35.641, "phase_angle": 162.394, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.082, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 188.240, 234.617, 258.549 ], "x_axis": [ 0.605, -0.216, 0.766 ], "y_axis": [ -0.778, 0.044, 0.627 ], "z_axis": [ -0.168, -0.976, -0.141 ], "quaternion": [ 0.614, 0.653, -0.381, 0.229 ] } }, { "index": 1501, "index_chain": 1501, "chain_name": "2", "nt_resnum": 1664, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1664", "linked_nts": [ "///2/1663", "///2/1665" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -66.939, "beta": 161.779, "gamma": 55.790, "delta": 136.598, "epsilon": 60.571, "zeta": 77.588, "epsilon_zeta": -17.018, "bb_type": "--", "chi": -109.764, "glyco_bond": "anti", "C5prime_xyz": [ -2.163, 8.259, -1.742 ], "P_xyz": [ 0.401, 8.818, -1.789 ], "form": ".", "ssZp": 0.551, "Dp": 1.259, "splay_angle": 88.922, "splay_distance": 12.572, "splay_ratio": 0.702, "d22": null, "d64": null, "eta": 169.244, "theta": -69.376, "eta_prime": -119.126, "theta_prime": 171.493, "eta_base": -123.697, "theta_base": 146.847, "v0": -19.552, "v1": 30.706, "v2": -29.667, "v3": 19.196, "v4": 0.031, "amplitude": 31.340, "phase_angle": 161.194, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "0b", "suiteness": 0.465, "filter_rmsd": 0.037, "frame": { "rmsd": 0.005, "origin": [ 182.309, 234.697, 251.593 ], "x_axis": [ 0.183, -0.959, 0.217 ], "y_axis": [ -0.645, 0.049, 0.763 ], "z_axis": [ -0.742, -0.280, -0.609 ], "quaternion": [ 0.395, 0.660, -0.607, -0.199 ] } }, { "index": 1502, "index_chain": 1502, "chain_name": "2", "nt_resnum": 1665, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1665", "linked_nts": [ "///2/1664", "///2/1666" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart", "alpha": -148.843, "beta": -113.849, "gamma": -144.796, "delta": 147.795, "epsilon": -121.149, "zeta": -26.440, "epsilon_zeta": -94.709, "bb_type": "--", "chi": -115.855, "glyco_bond": "anti", "C5prime_xyz": [ -1.910, 8.481, -1.377 ], "P_xyz": [ -1.135, 8.640, -3.883 ], "form": ".", "ssZp": 1.376, "Dp": 1.422, "splay_angle": 119.984, "splay_distance": 16.761, "splay_ratio": 0.866, "d22": null, "d64": null, "eta": 70.611, "theta": -97.098, "eta_prime": 67.774, "theta_prime": -80.802, "eta_base": 61.306, "theta_base": -41.322, "v0": -20.055, "v1": 34.715, "v2": -35.297, "v3": 24.609, "v4": -3.065, "amplitude": 36.378, "phase_angle": 165.994, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 181.468, 247.112, 249.802 ], "x_axis": [ 0.802, 0.057, 0.595 ], "y_axis": [ -0.163, -0.937, 0.310 ], "z_axis": [ 0.575, -0.346, -0.741 ], "quaternion": [ 0.176, 0.933, -0.028, 0.314 ] } }, { "index": 1503, "index_chain": 1503, "chain_name": "2", "nt_resnum": 1666, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1666", "linked_nts": [ "///2/1665", "///2/1667" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate,splayed-apart", "alpha": -88.986, "beta": -153.903, "gamma": 52.067, "delta": 82.249, "epsilon": -145.619, "zeta": -73.733, "epsilon_zeta": -71.886, "bb_type": "BI", "chi": -169.507, "glyco_bond": "anti", "C5prime_xyz": [ -1.229, 8.655, 1.110 ], "P_xyz": [ 1.023, 8.812, 2.451 ], "form": "A", "ssZp": 4.541, "Dp": 4.609, "splay_angle": 20.922, "splay_distance": 3.311, "splay_ratio": 0.183, "d22": 4.085, "d64": 3.978, "eta": 156.183, "theta": -143.663, "eta_prime": -159.679, "theta_prime": -138.094, "eta_base": -142.158, "theta_base": -105.295, "v0": 2.199, "v1": -23.579, "v2": 34.793, "v3": -34.474, "v4": 20.370, "amplitude": 36.052, "phase_angle": 15.186, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.047, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 177.573, 231.183, 253.269 ], "x_axis": [ -0.464, 0.557, 0.689 ], "y_axis": [ 0.154, 0.817, -0.556 ], "z_axis": [ -0.872, -0.152, -0.465 ], "quaternion": [ -0.471, 0.214, 0.829, -0.214 ] } }, { "index": 1504, "index_chain": 1504, "chain_name": "2", "nt_resnum": 1667, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1667", "linked_nts": [ "///2/1666", "///2/1668" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.699, "beta": 167.697, "gamma": 53.925, "delta": 83.012, "epsilon": -152.279, "zeta": -72.391, "epsilon_zeta": -79.888, "bb_type": "BI", "chi": -163.381, "glyco_bond": "anti", "C5prime_xyz": [ -1.470, 8.732, 0.728 ], "P_xyz": [ 1.099, 9.117, 1.100 ], "form": "A", "ssZp": 4.359, "Dp": 4.502, "splay_angle": 19.969, "splay_distance": 3.184, "splay_ratio": 0.174, "d22": 4.237, "d64": 3.903, "eta": 167.454, "theta": -143.872, "eta_prime": -175.445, "theta_prime": -143.917, "eta_base": -129.769, "theta_base": -114.194, "v0": 0.363, "v1": -21.537, "v2": 33.281, "v3": -33.997, "v4": 21.244, "amplitude": 35.000, "phase_angle": 18.030, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.963, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 174.399, 230.243, 253.187 ], "x_axis": [ -0.230, 0.932, 0.279 ], "y_axis": [ 0.335, 0.345, -0.877 ], "z_axis": [ -0.914, -0.108, -0.391 ], "quaternion": [ -0.426, 0.452, 0.701, -0.351 ] } }, { "index": 1505, "index_chain": 1505, "chain_name": "2", "nt_resnum": 1668, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1668", "linked_nts": [ "///2/1667", "///2/1669" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -62.746, "beta": 172.984, "gamma": 50.652, "delta": 83.977, "epsilon": -162.531, "zeta": -78.365, "epsilon_zeta": -84.167, "bb_type": "BI", "chi": -154.527, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.769, 0.222 ], "P_xyz": [ 1.196, 9.187, 0.552 ], "form": "A", "ssZp": 4.154, "Dp": 4.405, "splay_angle": 23.076, "splay_distance": 3.919, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 166.574, "theta": -125.988, "eta_prime": -177.478, "theta_prime": -135.860, "eta_base": -132.384, "theta_base": -113.269, "v0": 0.542, "v1": -21.059, "v2": 32.377, "v3": -32.980, "v4": 20.493, "amplitude": 33.993, "phase_angle": 17.737, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.956, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 171.216, 230.317, 253.166 ], "x_axis": [ 0.081, 0.963, -0.257 ], "y_axis": [ 0.304, -0.269, -0.914 ], "z_axis": [ -0.949, -0.004, -0.315 ], "quaternion": [ -0.352, 0.645, 0.491, -0.467 ] } }, { "index": 1506, "index_chain": 1506, "chain_name": "2", "nt_resnum": 1669, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1669", "linked_nts": [ "///2/1668", "///2/1670" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate", "alpha": 157.434, "beta": -156.440, "gamma": 166.831, "delta": 81.035, "epsilon": -141.119, "zeta": -71.881, "epsilon_zeta": -69.238, "bb_type": "BI", "chi": -171.240, "glyco_bond": "anti", "C5prime_xyz": [ -1.286, 8.590, 1.187 ], "P_xyz": [ 0.449, 9.988, -0.191 ], "form": "A", "ssZp": 4.653, "Dp": 4.707, "splay_angle": 24.438, "splay_distance": 3.898, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 156.519, "theta": -155.856, "eta_prime": 175.506, "theta_prime": -154.004, "eta_base": -140.317, "theta_base": -120.011, "v0": 4.129, "v1": -26.023, "v2": 36.873, "v3": -35.474, "v4": 19.792, "amplitude": 37.765, "phase_angle": 12.478, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.686, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 167.649, 231.931, 252.990 ], "x_axis": [ 0.274, 0.695, -0.665 ], "y_axis": [ 0.133, -0.712, -0.689 ], "z_axis": [ -0.953, 0.100, -0.288 ], "quaternion": [ -0.262, 0.754, 0.275, -0.536 ] } }, { "index": 1507, "index_chain": 1507, "chain_name": "2", "nt_resnum": 1670, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1670", "linked_nts": [ "///2/1669", "///2/1671" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate", "alpha": -55.970, "beta": 163.568, "gamma": 60.583, "delta": 79.124, "epsilon": -114.823, "zeta": -60.259, "epsilon_zeta": -54.564, "bb_type": "--", "chi": -160.097, "glyco_bond": "anti", "C5prime_xyz": [ -1.511, 8.839, 0.515 ], "P_xyz": [ 1.047, 9.355, 0.308 ], "form": ".", "ssZp": 4.200, "Dp": 4.702, "splay_angle": 26.423, "splay_distance": 4.481, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": -179.332, "theta": -131.134, "eta_prime": -163.380, "theta_prime": -143.662, "eta_base": -117.517, "theta_base": -133.948, "v0": -0.308, "v1": -22.538, "v2": 35.546, "v3": -36.702, "v4": 23.354, "amplitude": 37.611, "phase_angle": 19.074, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.834, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 164.969, 234.450, 251.699 ], "x_axis": [ 0.178, 0.141, -0.974 ], "y_axis": [ -0.167, -0.971, -0.171 ], "z_axis": [ -0.970, 0.193, -0.149 ], "quaternion": [ -0.120, 0.758, -0.009, -0.641 ] } }, { "index": 1508, "index_chain": 1508, "chain_name": "2", "nt_resnum": 1671, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1671", "linked_nts": [ "///2/1670", "///2/1672" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,phosphate", "alpha": -109.040, "beta": 97.120, "gamma": 138.837, "delta": 81.489, "epsilon": -110.795, "zeta": -83.410, "epsilon_zeta": -27.385, "bb_type": "--", "chi": 156.886, "glyco_bond": "anti", "C5prime_xyz": [ -1.825, 7.721, 2.759 ], "P_xyz": [ -0.652, 9.844, 1.767 ], "form": "A", "ssZp": 4.565, "Dp": 4.745, "splay_angle": 25.797, "splay_distance": 3.937, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 167.325, "theta": -164.298, "eta_prime": 172.705, "theta_prime": -155.220, "eta_base": -161.261, "theta_base": -111.649, "v0": 3.824, "v1": -25.314, "v2": 36.009, "v3": -34.768, "v4": 19.531, "amplitude": 36.925, "phase_angle": 12.792, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 161.243, 236.817, 250.929 ], "x_axis": [ 0.587, -0.162, -0.793 ], "y_axis": [ -0.033, -0.984, 0.177 ], "z_axis": [ -0.809, -0.077, -0.583 ], "quaternion": [ 0.071, 0.888, -0.055, -0.451 ] } }, { "index": 1509, "index_chain": 1509, "chain_name": "2", "nt_resnum": 1672, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1672", "linked_nts": [ "///2/1671", "///2/1673" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.338, "beta": 171.253, "gamma": 52.115, "delta": 84.123, "epsilon": -154.649, "zeta": -73.938, "epsilon_zeta": -80.710, "bb_type": "BI", "chi": -169.278, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.584, 1.112 ], "P_xyz": [ 1.166, 8.789, 1.732 ], "form": "A", "ssZp": 4.460, "Dp": 4.524, "splay_angle": 21.486, "splay_distance": 3.387, "splay_ratio": 0.188, "d22": 4.753, "d64": 4.434, "eta": 156.269, "theta": -147.507, "eta_prime": 176.772, "theta_prime": -147.581, "eta_base": -125.322, "theta_base": -133.395, "v0": 2.772, "v1": -23.375, "v2": 33.892, "v3": -33.246, "v4": 19.241, "amplitude": 34.955, "phase_angle": 14.172, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.306, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 159.442, 237.561, 247.507 ], "x_axis": [ 0.425, -0.843, -0.329 ], "y_axis": [ -0.427, -0.508, 0.748 ], "z_axis": [ -0.798, -0.177, -0.576 ], "quaternion": [ 0.292, 0.792, -0.401, -0.356 ] } }, { "index": 1510, "index_chain": 1510, "chain_name": "2", "nt_resnum": 1673, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1673", "linked_nts": [ "///2/1672", "///2/1674" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -72.217, "beta": -175.258, "gamma": 49.997, "delta": 83.648, "epsilon": -145.339, "zeta": -62.698, "epsilon_zeta": -82.641, "bb_type": "BI", "chi": -158.096, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.706, 0.436 ], "P_xyz": [ 1.275, 9.091, 1.009 ], "form": ".", "ssZp": 4.332, "Dp": 4.615, "splay_angle": 27.010, "splay_distance": 4.188, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 167.814, "theta": -133.159, "eta_prime": 175.991, "theta_prime": -130.107, "eta_base": -158.484, "theta_base": -75.128, "v0": 3.213, "v1": -24.084, "v2": 34.591, "v3": -33.681, "v4": 19.255, "amplitude": 35.580, "phase_angle": 13.541, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.883, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 157.837, 238.324, 244.623 ], "x_axis": [ 0.244, -0.956, 0.161 ], "y_axis": [ -0.650, -0.038, 0.759 ], "z_axis": [ -0.720, -0.290, -0.631 ], "quaternion": [ 0.379, 0.691, -0.581, -0.202 ] } }, { "index": 1511, "index_chain": 1511, "chain_name": "2", "nt_resnum": 1674, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1674", "linked_nts": [ "///2/1673", "///2/1675" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-donor,phosphate", "alpha": -80.066, "beta": 160.620, "gamma": 70.272, "delta": 83.935, "epsilon": -115.991, "zeta": -127.654, "epsilon_zeta": 11.663, "bb_type": "--", "chi": -166.748, "glyco_bond": "anti", "C5prime_xyz": [ -0.980, 8.589, 0.922 ], "P_xyz": [ 1.597, 8.641, 0.396 ], "form": ".", "ssZp": 4.526, "Dp": 4.809, "splay_angle": 47.146, "splay_distance": 6.906, "splay_ratio": 0.405, "d22": null, "d64": null, "eta": 165.796, "theta": 165.919, "eta_prime": -172.700, "theta_prime": 163.202, "eta_base": -100.006, "theta_base": 127.328, "v0": 6.521, "v1": -27.091, "v2": 36.216, "v3": -33.362, "v4": 17.019, "amplitude": 36.623, "phase_angle": 8.556, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.454, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 155.824, 234.717, 243.931 ], "x_axis": [ -0.339, -0.609, 0.717 ], "y_axis": [ -0.678, 0.686, 0.263 ], "z_axis": [ -0.653, -0.397, -0.645 ], "quaternion": [ -0.419, -0.394, 0.817, -0.041 ] } }, { "index": 1512, "index_chain": 1512, "chain_name": "2", "nt_resnum": 1675, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1675", "linked_nts": [ "///2/1674", "///2/1676" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,phosphate", "alpha": -111.869, "beta": 122.758, "gamma": 84.187, "delta": 89.508, "epsilon": -178.107, "zeta": -131.428, "epsilon_zeta": -46.680, "bb_type": "BI", "chi": -135.709, "glyco_bond": "anti", "C5prime_xyz": [ -0.946, 8.405, -0.819 ], "P_xyz": [ 0.760, 7.484, -2.614 ], "form": ".", "ssZp": 3.599, "Dp": 4.338, "splay_angle": 49.030, "splay_distance": 8.107, "splay_ratio": 0.416, "d22": null, "d64": null, "eta": 135.667, "theta": -169.477, "eta_prime": 150.027, "theta_prime": 169.220, "eta_base": 127.767, "theta_base": 126.408, "v0": 10.699, "v1": -28.313, "v2": 34.054, "v3": -28.799, "v4": 11.588, "amplitude": 34.057, "phase_angle": 0.752, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.013, "origin": [ 156.254, 239.750, 239.222 ], "x_axis": [ 0.070, -0.837, 0.543 ], "y_axis": [ -0.989, -0.129, -0.071 ], "z_axis": [ 0.129, -0.532, -0.837 ], "quaternion": [ 0.162, 0.713, -0.640, 0.235 ] } }, { "index": 1513, "index_chain": 1513, "chain_name": "2", "nt_resnum": 1676, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1676", "linked_nts": [ "///2/1675", "///2/1677" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,cap-donor,phosphate", "alpha": 43.699, "beta": 127.727, "gamma": -25.383, "delta": 136.698, "epsilon": 58.663, "zeta": 79.675, "epsilon_zeta": -21.012, "bb_type": "--", "chi": -116.407, "glyco_bond": "anti", "C5prime_xyz": [ -1.832, 8.440, -1.485 ], "P_xyz": [ -0.292, 10.078, -0.107 ], "form": ".", "ssZp": 0.384, "Dp": 1.202, "splay_angle": 46.996, "splay_distance": 6.658, "splay_ratio": 0.399, "d22": 6.617, "d64": 5.786, "eta": 163.664, "theta": -67.642, "eta_prime": -169.615, "theta_prime": -108.265, "eta_base": 156.410, "theta_base": -56.659, "v0": -19.544, "v1": 30.766, "v2": -29.838, "v3": 19.268, "v4": -0.037, "amplitude": 31.492, "phase_angle": 161.344, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.112, "frame": { "rmsd": 0.010, "origin": [ 156.126, 245.555, 233.564 ], "x_axis": [ 0.290, -0.224, 0.930 ], "y_axis": [ -0.753, -0.654, 0.078 ], "z_axis": [ 0.591, -0.723, -0.358 ], "quaternion": [ 0.264, 0.759, -0.322, 0.501 ] } }, { "index": 1514, "index_chain": 1514, "chain_name": "2", "nt_resnum": 1677, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1677", "linked_nts": [ "///2/1676", "///2/1678" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-stack,non-pair-contact,junction-loop,cap-acceptor,phosphate", "alpha": 146.693, "beta": -133.010, "gamma": 60.936, "delta": 81.176, "epsilon": -137.551, "zeta": -99.038, "epsilon_zeta": -38.513, "bb_type": "BI", "chi": -73.181, "glyco_bond": "--", "C5prime_xyz": [ -3.148, 6.492, -3.329 ], "P_xyz": [ -1.016, 6.534, -4.847 ], "form": ".", "ssZp": -1.436, "Dp": 4.657, "splay_angle": 53.161, "splay_distance": 8.632, "splay_ratio": 0.449, "d22": null, "d64": null, "eta": 122.420, "theta": -160.266, "eta_prime": 161.706, "theta_prime": -153.992, "eta_base": -137.419, "theta_base": -142.735, "v0": 0.090, "v1": -22.401, "v2": 34.912, "v3": -35.810, "v4": 22.549, "amplitude": 36.806, "phase_angle": 18.459, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 155.967, 238.919, 233.046 ], "x_axis": [ -0.564, -0.671, 0.481 ], "y_axis": [ -0.560, -0.117, -0.820 ], "z_axis": [ 0.607, -0.732, -0.309 ], "quaternion": [ 0.048, -0.464, 0.663, -0.586 ] } }, { "index": 1515, "index_chain": 1515, "chain_name": "2", "nt_resnum": 1678, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1678", "linked_nts": [ "///2/1677", "///2/1679" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -66.037, "beta": 160.149, "gamma": 60.960, "delta": 83.178, "epsilon": -154.995, "zeta": -79.433, "epsilon_zeta": -75.562, "bb_type": "BI", "chi": -167.801, "glyco_bond": "anti", "C5prime_xyz": [ -1.610, 8.685, 0.990 ], "P_xyz": [ 0.976, 9.093, 1.174 ], "form": ".", "ssZp": 4.370, "Dp": 4.453, "splay_angle": 29.500, "splay_distance": 4.702, "splay_ratio": 0.315, "d22": null, "d64": null, "eta": 168.042, "theta": -152.945, "eta_prime": 174.866, "theta_prime": -148.808, "eta_base": -175.681, "theta_base": -75.494, "v0": -0.585, "v1": -20.681, "v2": 32.789, "v3": -34.076, "v4": 21.860, "amplitude": 34.796, "phase_angle": 19.552, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.446, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 153.467, 231.908, 228.676 ], "x_axis": [ -0.245, 0.452, 0.858 ], "y_axis": [ -0.198, 0.843, -0.501 ], "z_axis": [ -0.949, -0.292, -0.117 ], "quaternion": [ 0.609, -0.086, -0.742, 0.267 ] } }, { "index": 1516, "index_chain": 1516, "chain_name": "2", "nt_resnum": 1679, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1679", "linked_nts": [ "///2/1678", "///2/1680" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -56.974, "beta": -176.987, "gamma": 64.729, "delta": 143.746, "epsilon": -106.695, "zeta": 80.002, "epsilon_zeta": 173.303, "bb_type": "--", "chi": 55.335, "glyco_bond": "syn", "C5prime_xyz": [ -5.528, 4.100, 0.996 ], "P_xyz": [ -5.817, 1.558, 0.413 ], "form": ".", "ssZp": -1.143, "Dp": 1.123, "splay_angle": 72.980, "splay_distance": 12.740, "splay_ratio": 0.596, "d22": null, "d64": null, "eta": -151.845, "theta": 107.296, "eta_prime": -133.856, "theta_prime": 71.609, "eta_base": -69.351, "theta_base": 80.574, "v0": -25.066, "v1": 37.679, "v2": -35.199, "v3": 21.662, "v4": 1.934, "amplitude": 37.873, "phase_angle": 158.343, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.859, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 149.197, 233.427, 227.426 ], "x_axis": [ 0.190, -0.400, 0.896 ], "y_axis": [ 0.285, -0.851, -0.441 ], "z_axis": [ 0.940, 0.339, -0.048 ], "quaternion": [ -0.270, 0.723, -0.040, 0.635 ] } }, { "index": 1517, "index_chain": 1517, "chain_name": "2", "nt_resnum": 1680, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1680", "linked_nts": [ "///2/1679", "///2/1681" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 52.678, "beta": -166.208, "gamma": -133.177, "delta": 80.072, "epsilon": -149.431, "zeta": -77.770, "epsilon_zeta": -71.661, "bb_type": "BI", "chi": -160.161, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 8.800, 0.518 ], "P_xyz": [ -1.016, 11.221, -0.427 ], "form": "A", "ssZp": 4.432, "Dp": 4.635, "splay_angle": 26.356, "splay_distance": 4.134, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 160.583, "theta": 164.283, "eta_prime": 146.723, "theta_prime": 179.920, "eta_base": -176.262, "theta_base": -143.340, "v0": 1.608, "v1": -24.121, "v2": 36.237, "v3": -36.284, "v4": 21.869, "amplitude": 37.737, "phase_angle": 16.211, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 159.720, 232.490, 220.306 ], "x_axis": [ 0.212, -0.623, 0.753 ], "y_axis": [ -0.894, -0.434, -0.108 ], "z_axis": [ 0.394, -0.650, -0.649 ], "quaternion": [ 0.179, 0.757, -0.501, 0.378 ] } }, { "index": 1518, "index_chain": 1518, "chain_name": "2", "nt_resnum": 1681, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1681", "linked_nts": [ "///2/1680", "///2/1682" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -55.678, "beta": 162.371, "gamma": 61.158, "delta": 80.985, "epsilon": -148.893, "zeta": -86.483, "epsilon_zeta": -62.410, "bb_type": "BI", "chi": -159.324, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.736, 0.486 ], "P_xyz": [ 1.211, 9.077, 0.186 ], "form": "A", "ssZp": 4.404, "Dp": 4.630, "splay_angle": 20.912, "splay_distance": 3.331, "splay_ratio": 0.182, "d22": 4.700, "d64": 4.508, "eta": 175.837, "theta": -154.593, "eta_prime": -168.431, "theta_prime": -148.790, "eta_base": -128.283, "theta_base": -143.807, "v0": 2.126, "v1": -24.160, "v2": 35.821, "v3": -35.582, "v4": 21.117, "amplitude": 37.159, "phase_angle": 15.422, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 162.385, 229.753, 218.724 ], "x_axis": [ -0.275, -0.791, 0.547 ], "y_axis": [ -0.855, -0.059, -0.515 ], "z_axis": [ 0.440, -0.609, -0.660 ], "quaternion": [ -0.039, -0.601, 0.685, -0.411 ] } }, { "index": 1519, "index_chain": 1519, "chain_name": "2", "nt_resnum": 1682, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1682", "linked_nts": [ "///2/1681", "///2/1683" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -48.631, "beta": 167.078, "gamma": 65.937, "delta": 145.528, "epsilon": -79.424, "zeta": 111.913, "epsilon_zeta": 168.663, "bb_type": "--", "chi": -123.576, "glyco_bond": "anti", "C5prime_xyz": [ -1.970, 8.652, -1.060 ], "P_xyz": [ 0.569, 9.249, -0.793 ], "form": ".", "ssZp": 0.427, "Dp": 0.448, "splay_angle": 42.252, "splay_distance": 7.018, "splay_ratio": 0.363, "d22": 6.384, "d64": 5.726, "eta": -142.618, "theta": 139.016, "eta_prime": -124.125, "theta_prime": 116.349, "eta_base": -123.983, "theta_base": 103.044, "v0": -22.997, "v1": 36.437, "v2": -35.229, "v3": 22.862, "v4": -0.126, "amplitude": 37.166, "phase_angle": 161.420, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.712, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 165.044, 228.206, 217.449 ], "x_axis": [ -0.653, -0.611, 0.448 ], "y_axis": [ -0.589, 0.038, -0.807 ], "z_axis": [ 0.476, -0.791, -0.384 ], "quaternion": [ 0.010, -0.416, 0.720, -0.555 ] } }, { "index": 1520, "index_chain": 1520, "chain_name": "2", "nt_resnum": 1683, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1683", "linked_nts": [ "///2/1682", "///2/1684" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 163.733, "beta": -151.055, "gamma": 53.689, "delta": 80.804, "epsilon": -151.350, "zeta": -74.239, "epsilon_zeta": -77.111, "bb_type": "BI", "chi": -166.255, "glyco_bond": "anti", "C5prime_xyz": [ -1.283, 8.700, 0.899 ], "P_xyz": [ 1.059, 8.950, 2.054 ], "form": "A", "ssZp": 4.549, "Dp": 4.626, "splay_angle": 25.275, "splay_distance": 3.974, "splay_ratio": 0.220, "d22": 4.558, "d64": 4.793, "eta": 117.619, "theta": -149.839, "eta_prime": 103.805, "theta_prime": -144.558, "eta_base": 103.567, "theta_base": -118.616, "v0": 2.711, "v1": -24.814, "v2": 36.273, "v3": -35.685, "v4": 20.784, "amplitude": 37.472, "phase_angle": 14.535, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.017, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 164.258, 235.136, 216.673 ], "x_axis": [ -0.541, -0.820, 0.185 ], "y_axis": [ -0.115, -0.146, -0.983 ], "z_axis": [ 0.833, -0.553, -0.016 ], "quaternion": [ -0.273, 0.394, -0.594, 0.646 ] } }, { "index": 1521, "index_chain": 1521, "chain_name": "2", "nt_resnum": 1684, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1684", "linked_nts": [ "///2/1683", "///2/1685" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -60.627, "beta": 172.398, "gamma": 55.862, "delta": 80.400, "epsilon": -138.629, "zeta": -72.296, "epsilon_zeta": -66.333, "bb_type": "BI", "chi": -163.355, "glyco_bond": "anti", "C5prime_xyz": [ -1.323, 8.749, 0.723 ], "P_xyz": [ 1.265, 9.131, 0.914 ], "form": "A", "ssZp": 4.485, "Dp": 4.688, "splay_angle": 27.079, "splay_distance": 4.287, "splay_ratio": 0.235, "d22": 3.939, "d64": 3.900, "eta": 175.030, "theta": -136.659, "eta_prime": -173.449, "theta_prime": -133.940, "eta_base": -138.818, "theta_base": -100.039, "v0": 2.166, "v1": -24.463, "v2": 36.227, "v3": -35.988, "v4": 21.317, "amplitude": 37.573, "phase_angle": 15.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.969, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 167.123, 232.936, 218.329 ], "x_axis": [ -0.541, -0.767, -0.344 ], "y_axis": [ 0.186, 0.290, -0.939 ], "z_axis": [ 0.820, -0.572, -0.014 ], "quaternion": [ 0.428, -0.214, 0.679, -0.556 ] } }, { "index": 1522, "index_chain": 1522, "chain_name": "2", "nt_resnum": 1685, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1685", "linked_nts": [ "///2/1684", "///2/1686" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -61.717, "beta": 173.632, "gamma": 50.921, "delta": 81.213, "epsilon": -147.897, "zeta": -60.012, "epsilon_zeta": -87.885, "bb_type": "BI", "chi": -162.284, "glyco_bond": "anti", "C5prime_xyz": [ -1.428, 8.710, 0.661 ], "P_xyz": [ 1.129, 9.166, 1.013 ], "form": ".", "ssZp": 4.460, "Dp": 4.625, "splay_angle": 19.244, "splay_distance": 3.591, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 166.097, "theta": -106.957, "eta_prime": -177.328, "theta_prime": -120.094, "eta_base": -127.916, "theta_base": -88.794, "v0": 1.863, "v1": -23.787, "v2": 35.446, "v3": -35.364, "v4": 21.133, "amplitude": 36.835, "phase_angle": 15.789, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.936, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 168.790, 228.999, 218.014 ], "x_axis": [ -0.506, -0.208, -0.837 ], "y_axis": [ 0.513, 0.707, -0.486 ], "z_axis": [ 0.693, -0.676, -0.251 ], "quaternion": [ 0.487, 0.097, 0.785, -0.370 ] } }, { "index": 1523, "index_chain": 1523, "chain_name": "2", "nt_resnum": 1686, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1686", "linked_nts": [ "///2/1685", "///2/1687" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 159.348, "beta": -179.052, "gamma": 168.774, "delta": 81.653, "epsilon": -147.180, "zeta": -79.274, "epsilon_zeta": -67.906, "bb_type": "BI", "chi": -158.970, "glyco_bond": "anti", "C5prime_xyz": [ -1.286, 8.793, 0.482 ], "P_xyz": [ -0.009, 10.412, -1.132 ], "form": "A", "ssZp": 4.366, "Dp": 4.610, "splay_angle": 22.843, "splay_distance": 3.613, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 148.700, "theta": -176.595, "eta_prime": 170.774, "theta_prime": -170.532, "eta_base": -135.190, "theta_base": -136.301, "v0": 1.829, "v1": -23.514, "v2": 35.067, "v3": -34.971, "v4": 20.917, "amplitude": 36.444, "phase_angle": 15.803, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.680, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 168.066, 226.202, 215.881 ], "x_axis": [ -0.262, 0.434, -0.862 ], "y_axis": [ 0.898, 0.436, -0.053 ], "z_axis": [ 0.353, -0.789, -0.504 ], "quaternion": [ 0.409, 0.449, 0.742, -0.284 ] } }, { "index": 1524, "index_chain": 1524, "chain_name": "2", "nt_resnum": 1687, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1687", "linked_nts": [ "///2/1686", "///2/1688" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -54.535, "beta": 160.534, "gamma": 55.035, "delta": 80.778, "epsilon": -144.962, "zeta": -76.175, "epsilon_zeta": -68.787, "bb_type": "BI", "chi": -157.115, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.793, 0.354 ], "P_xyz": [ 1.295, 9.058, 0.121 ], "form": "A", "ssZp": 4.334, "Dp": 4.651, "splay_angle": 26.930, "splay_distance": 4.310, "splay_ratio": 0.233, "d22": 3.991, "d64": 4.074, "eta": 170.661, "theta": -142.730, "eta_prime": -174.048, "theta_prime": -143.363, "eta_base": -130.252, "theta_base": -119.537, "v0": 2.154, "v1": -24.223, "v2": 35.887, "v3": -35.601, "v4": 21.106, "amplitude": 37.215, "phase_angle": 15.355, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.831, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 168.281, 223.630, 213.352 ], "x_axis": [ 0.274, 0.592, -0.758 ], "y_axis": [ 0.925, 0.054, 0.376 ], "z_axis": [ 0.264, -0.804, -0.532 ], "quaternion": [ 0.446, 0.662, 0.573, -0.187 ] } }, { "index": 1525, "index_chain": 1525, "chain_name": "2", "nt_resnum": 1688, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1688", "linked_nts": [ "///2/1687", "///2/1689" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -55.212, "beta": 173.017, "gamma": 45.593, "delta": 80.672, "epsilon": -172.181, "zeta": -87.178, "epsilon_zeta": -85.002, "bb_type": "BI", "chi": -167.540, "glyco_bond": "anti", "C5prime_xyz": [ -1.403, 8.742, 0.974 ], "P_xyz": [ 1.069, 9.162, 1.731 ], "form": "A", "ssZp": 4.363, "Dp": 4.392, "splay_angle": 23.971, "splay_distance": 3.843, "splay_ratio": 0.211, "d22": 4.799, "d64": 4.982, "eta": 166.660, "theta": -147.339, "eta_prime": -178.425, "theta_prime": -152.003, "eta_base": -137.543, "theta_base": -137.900, "v0": 0.101, "v1": -22.215, "v2": 34.650, "v3": -35.570, "v4": 22.376, "amplitude": 36.533, "phase_angle": 18.475, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.828, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 168.800, 221.168, 209.852 ], "x_axis": [ 0.557, 0.811, -0.177 ], "y_axis": [ 0.577, -0.225, 0.785 ], "z_axis": [ 0.597, -0.539, -0.594 ], "quaternion": [ 0.430, 0.771, 0.450, 0.136 ] } }, { "index": 1526, "index_chain": 1526, "chain_name": "2", "nt_resnum": 1689, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1689", "linked_nts": [ "///2/1688", "///2/1690" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": 178.064, "beta": -152.391, "gamma": 150.715, "delta": 82.011, "epsilon": -140.692, "zeta": -73.676, "epsilon_zeta": -67.016, "bb_type": "BI", "chi": 176.801, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.357, 1.871 ], "P_xyz": [ 0.964, 9.330, 1.218 ], "form": "A", "ssZp": 4.598, "Dp": 4.643, "splay_angle": 24.553, "splay_distance": 3.924, "splay_ratio": 0.218, "d22": 4.751, "d64": 4.851, "eta": 162.542, "theta": -148.817, "eta_prime": 174.598, "theta_prime": -151.196, "eta_base": -156.070, "theta_base": -134.212, "v0": 2.882, "v1": -24.148, "v2": 35.063, "v3": -34.383, "v4": 19.856, "amplitude": 36.160, "phase_angle": 14.152, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.030, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 168.962, 219.526, 206.381 ], "x_axis": [ 0.718, 0.663, 0.212 ], "y_axis": [ 0.291, -0.562, 0.775 ], "z_axis": [ 0.633, -0.494, -0.596 ], "quaternion": [ 0.374, 0.848, 0.281, 0.249 ] } }, { "index": 1527, "index_chain": 1527, "chain_name": "2", "nt_resnum": 1690, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1690", "linked_nts": [ "///2/1689", "///2/1691" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -64.222, "beta": -177.432, "gamma": 46.453, "delta": 80.894, "epsilon": -149.816, "zeta": -70.981, "epsilon_zeta": -78.834, "bb_type": "BI", "chi": -165.323, "glyco_bond": "anti", "C5prime_xyz": [ -1.501, 8.704, 0.834 ], "P_xyz": [ 0.928, 9.252, 1.649 ], "form": "A", "ssZp": 4.491, "Dp": 4.597, "splay_angle": 22.248, "splay_distance": 3.529, "splay_ratio": 0.195, "d22": 4.062, "d64": 4.078, "eta": 166.796, "theta": -146.009, "eta_prime": 178.849, "theta_prime": -142.654, "eta_base": -149.449, "theta_base": -108.015, "v0": 1.127, "v1": -23.355, "v2": 35.408, "v3": -35.716, "v4": 21.804, "amplitude": 36.999, "phase_angle": 16.866, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.877, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 170.345, 219.327, 202.714 ], "x_axis": [ 0.711, 0.314, 0.630 ], "y_axis": [ -0.135, -0.818, 0.559 ], "z_axis": [ 0.691, -0.482, -0.539 ], "quaternion": [ 0.297, 0.876, 0.051, 0.377 ] } }, { "index": 1528, "index_chain": 1528, "chain_name": "2", "nt_resnum": 1691, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1691", "linked_nts": [ "///2/1690", "///2/1692" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end", "alpha": -63.974, "beta": 168.423, "gamma": 56.674, "delta": 80.901, "epsilon": -143.769, "zeta": -71.633, "epsilon_zeta": -72.137, "bb_type": "BI", "chi": -164.509, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.718, 0.783 ], "P_xyz": [ 1.079, 9.188, 0.958 ], "form": ".", "ssZp": 4.489, "Dp": 4.630, "splay_angle": 27.925, "splay_distance": 4.347, "splay_ratio": 0.241, "d22": 4.110, "d64": 4.205, "eta": 168.417, "theta": -138.593, "eta_prime": -176.173, "theta_prime": -135.823, "eta_base": -127.883, "theta_base": -95.919, "v0": 1.052, "v1": -23.186, "v2": 35.257, "v3": -35.631, "v4": 21.818, "amplitude": 36.872, "phase_angle": 17.017, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.971, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 173.538, 219.157, 201.220 ], "x_axis": [ 0.457, -0.208, 0.865 ], "y_axis": [ -0.490, -0.870, 0.050 ], "z_axis": [ 0.742, -0.447, -0.500 ], "quaternion": [ 0.148, 0.841, -0.207, 0.478 ] } }, { "index": 1529, "index_chain": 1529, "chain_name": "2", "nt_resnum": 1692, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1692", "linked_nts": [ "///2/1691", "///2/1693" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,phosphate", "alpha": -60.040, "beta": 164.742, "gamma": 58.612, "delta": 82.078, "epsilon": -135.324, "zeta": -81.900, "epsilon_zeta": -53.424, "bb_type": "BI", "chi": -162.529, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.680, 0.687 ], "P_xyz": [ 1.257, 8.971, 0.624 ], "form": "A", "ssZp": 4.446, "Dp": 4.691, "splay_angle": 19.124, "splay_distance": 3.038, "splay_ratio": 0.166, "d22": null, "d64": null, "eta": 172.105, "theta": -141.522, "eta_prime": -169.218, "theta_prime": -142.232, "eta_base": -113.079, "theta_base": -126.514, "v0": 2.964, "v1": -24.437, "v2": 35.418, "v3": -34.668, "v4": 19.999, "amplitude": 36.509, "phase_angle": 14.044, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.915, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 177.419, 217.207, 201.368 ], "x_axis": [ -0.031, -0.750, 0.661 ], "y_axis": [ -0.653, -0.486, -0.582 ], "z_axis": [ 0.757, -0.449, -0.475 ], "quaternion": [ -0.048, 0.695, -0.505, 0.510 ] } }, { "index": 1530, "index_chain": 1530, "chain_name": "2", "nt_resnum": 1693, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1693", "linked_nts": [ "///2/1692", "///2/1694" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate", "alpha": -73.926, "beta": -179.836, "gamma": 44.202, "delta": 83.078, "epsilon": -153.444, "zeta": -82.288, "epsilon_zeta": -71.156, "bb_type": "BI", "chi": -154.871, "glyco_bond": "anti", "C5prime_xyz": [ -1.150, 8.737, 0.262 ], "P_xyz": [ 1.403, 9.088, 0.749 ], "form": "A", "ssZp": 4.282, "Dp": 4.589, "splay_angle": 23.765, "splay_distance": 3.773, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 154.360, "theta": -156.187, "eta_prime": 163.989, "theta_prime": -154.040, "eta_base": -166.176, "theta_base": -141.127, "v0": 4.102, "v1": -24.964, "v2": 35.172, "v3": -33.810, "v4": 18.761, "amplitude": 35.991, "phase_angle": 12.251, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.730, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 180.239, 216.129, 201.029 ], "x_axis": [ -0.755, -0.531, 0.384 ], "y_axis": [ -0.385, -0.114, -0.916 ], "z_axis": [ 0.530, -0.840, -0.119 ], "quaternion": [ 0.055, -0.345, 0.663, -0.662 ] } }, { "index": 1531, "index_chain": 1531, "chain_name": "2", "nt_resnum": 1694, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1694", "linked_nts": [ "///2/1693", "///2/1695" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -55.960, "beta": 164.700, "gamma": 53.786, "delta": 80.876, "epsilon": -135.703, "zeta": -132.461, "epsilon_zeta": -3.242, "bb_type": "--", "chi": -155.589, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.757, 0.256 ], "P_xyz": [ 1.159, 9.153, 0.094 ], "form": ".", "ssZp": 4.236, "Dp": 4.693, "splay_angle": 118.025, "splay_distance": 15.959, "splay_ratio": 0.857, "d22": null, "d64": null, "eta": 174.579, "theta": -178.749, "eta_prime": -176.660, "theta_prime": 142.757, "eta_base": -156.011, "theta_base": 98.931, "v0": 1.888, "v1": -23.958, "v2": 35.710, "v3": -35.627, "v4": 21.281, "amplitude": 37.109, "phase_angle": 15.782, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.842, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 183.025, 213.670, 201.681 ], "x_axis": [ -0.855, -0.517, 0.036 ], "y_axis": [ -0.049, 0.012, -0.999 ], "z_axis": [ 0.516, -0.856, -0.036 ], "quaternion": [ 0.174, -0.205, 0.690, -0.672 ] } }, { "index": 1532, "index_chain": 1532, "chain_name": "2", "nt_resnum": 1695, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1695", "linked_nts": [ "///2/1694", "///2/1696" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 48.670, "beta": -154.821, "gamma": 162.821, "delta": 147.294, "epsilon": -94.925, "zeta": -54.221, "epsilon_zeta": -40.704, "bb_type": "--", "chi": -136.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.856, 8.695, -0.292 ], "P_xyz": [ 0.477, 9.324, -1.301 ], "form": ".", "ssZp": 0.771, "Dp": 0.799, "splay_angle": 113.163, "splay_distance": 16.301, "splay_ratio": 0.835, "d22": null, "d64": null, "eta": 101.540, "theta": -72.599, "eta_prime": 92.417, "theta_prime": -76.059, "eta_base": 72.594, "theta_base": -44.095, "v0": -21.150, "v1": 35.635, "v2": -35.699, "v3": 24.396, "v4": -2.241, "amplitude": 37.019, "phase_angle": 164.656, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 192.563, 217.761, 189.558 ], "x_axis": [ -0.810, 0.327, -0.487 ], "y_axis": [ -0.576, -0.595, 0.561 ], "z_axis": [ -0.106, 0.735, 0.670 ], "quaternion": [ 0.257, -0.169, 0.369, 0.877 ] } }, { "index": 1533, "index_chain": 1533, "chain_name": "2", "nt_resnum": 1696, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1696", "linked_nts": [ "///2/1695", "///2/1697" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -74.490, "beta": -165.241, "gamma": 49.345, "delta": 80.823, "epsilon": -146.797, "zeta": -94.662, "epsilon_zeta": -52.134, "bb_type": "BI", "chi": -158.857, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.792, 0.454 ], "P_xyz": [ 1.108, 9.336, 1.212 ], "form": ".", "ssZp": 4.381, "Dp": 4.631, "splay_angle": 31.484, "splay_distance": 4.994, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 149.115, "theta": -134.196, "eta_prime": -167.188, "theta_prime": -124.232, "eta_base": -144.123, "theta_base": -100.015, "v0": 1.511, "v1": -23.611, "v2": 35.478, "v3": -35.608, "v4": 21.505, "amplitude": 36.969, "phase_angle": 16.330, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.765, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 184.842, 211.646, 202.546 ], "x_axis": [ -0.325, -0.600, -0.731 ], "y_axis": [ 0.842, 0.169, -0.512 ], "z_axis": [ 0.431, -0.782, 0.450 ], "quaternion": [ 0.569, 0.118, 0.511, -0.634 ] } }, { "index": 1534, "index_chain": 1534, "chain_name": "2", "nt_resnum": 1697, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1697", "linked_nts": [ "///2/1696", "///2/1698" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,splayed-apart", "alpha": -175.839, "beta": -148.164, "gamma": 167.428, "delta": 147.354, "epsilon": -135.810, "zeta": 112.201, "epsilon_zeta": 111.989, "bb_type": "--", "chi": -139.733, "glyco_bond": "anti", "C5prime_xyz": [ -1.823, 8.687, -0.118 ], "P_xyz": [ 0.526, 9.255, -1.129 ], "form": ".", "ssZp": 1.587, "Dp": 1.672, "splay_angle": 158.524, "splay_distance": 18.340, "splay_ratio": 0.983, "d22": null, "d64": null, "eta": -163.074, "theta": 99.197, "eta_prime": -138.492, "theta_prime": 42.517, "eta_base": -116.827, "theta_base": -29.627, "v0": -20.515, "v1": 34.982, "v2": -35.282, "v3": 24.362, "v4": -2.607, "amplitude": 36.479, "phase_angle": 165.279, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.477, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 185.619, 206.733, 202.994 ], "x_axis": [ 0.010, 0.032, -0.999 ], "y_axis": [ 0.934, 0.357, 0.021 ], "z_axis": [ 0.357, -0.934, -0.026 ], "quaternion": [ 0.579, 0.412, 0.586, -0.390 ] } }, { "index": 1535, "index_chain": 1535, "chain_name": "2", "nt_resnum": 1698, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1698", "linked_nts": [ "///2/1697", "///2/1699" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 68.648, "beta": -178.039, "gamma": 84.324, "delta": 147.927, "epsilon": -149.057, "zeta": 27.131, "epsilon_zeta": 183.812, "bb_type": "--", "chi": -108.954, "glyco_bond": "anti", "C5prime_xyz": [ -2.014, 8.329, -1.741 ], "P_xyz": [ 0.564, 8.690, -2.080 ], "form": ".", "ssZp": 1.842, "Dp": 1.856, "splay_angle": 103.619, "splay_distance": 14.842, "splay_ratio": 0.786, "d22": null, "d64": null, "eta": 4.918, "theta": 17.063, "eta_prime": 39.423, "theta_prime": -13.542, "eta_base": 99.534, "theta_base": 18.607, "v0": -20.865, "v1": 35.441, "v2": -35.705, "v3": 24.560, "v4": -2.498, "amplitude": 36.948, "phase_angle": 165.096, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.012, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 201.408, 208.736, 212.108 ], "x_axis": [ 0.243, -0.727, -0.643 ], "y_axis": [ -0.895, 0.088, -0.438 ], "z_axis": [ 0.375, 0.681, -0.629 ], "quaternion": [ -0.419, 0.668, -0.607, -0.100 ] } }, { "index": 1536, "index_chain": 1536, "chain_name": "2", "nt_resnum": 1699, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1699", "linked_nts": [ "///2/1698", "///2/1700" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate,splayed-apart", "alpha": -124.940, "beta": -177.533, "gamma": 58.771, "delta": 81.523, "epsilon": -152.332, "zeta": 156.533, "epsilon_zeta": 51.135, "bb_type": "--", "chi": -156.685, "glyco_bond": "anti", "C5prime_xyz": [ -1.134, 8.629, 0.311 ], "P_xyz": [ 1.475, 8.875, 0.281 ], "form": ".", "ssZp": 4.379, "Dp": 4.671, "splay_angle": 90.935, "splay_distance": 10.721, "splay_ratio": 0.725, "d22": null, "d64": null, "eta": 130.983, "theta": 80.363, "eta_prime": 178.799, "theta_prime": 97.046, "eta_base": -160.831, "theta_base": 114.515, "v0": 6.151, "v1": -27.759, "v2": 37.707, "v3": -35.204, "v4": 18.319, "amplitude": 38.242, "phase_angle": 9.592, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 186.653, 208.927, 210.520 ], "x_axis": [ 0.251, -0.114, 0.961 ], "y_axis": [ 0.759, 0.639, -0.122 ], "z_axis": [ -0.601, 0.760, 0.247 ], "quaternion": [ 0.731, -0.302, -0.534, -0.299 ] } }, { "index": 1537, "index_chain": 1537, "chain_name": "2", "nt_resnum": 1700, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1700", "linked_nts": [ "///2/1699", "///2/1701" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate,splayed-apart", "alpha": -58.528, "beta": 160.170, "gamma": 52.225, "delta": 145.861, "epsilon": -103.628, "zeta": 96.166, "epsilon_zeta": 160.206, "bb_type": "--", "chi": 28.353, "glyco_bond": "syn", "C5prime_xyz": [ -5.563, 4.261, -0.490 ], "P_xyz": [ -5.333, 2.042, -1.867 ], "form": ".", "ssZp": -1.020, "Dp": 1.087, "splay_angle": 118.345, "splay_distance": 16.734, "splay_ratio": 0.859, "d22": 10.882, "d64": 14.260, "eta": -148.919, "theta": 129.477, "eta_prime": -142.340, "theta_prime": 67.120, "eta_base": -177.829, "theta_base": 29.058, "v0": -22.378, "v1": 36.091, "v2": -35.229, "v3": 23.246, "v4": -0.741, "amplitude": 36.967, "phase_angle": 162.358, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.654, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 188.364, 215.975, 202.624 ], "x_axis": [ -0.354, 0.197, -0.914 ], "y_axis": [ 0.197, 0.971, 0.133 ], "z_axis": [ 0.914, -0.133, -0.382 ], "quaternion": [ 0.556, 0.119, 0.823, 0.000 ] } }, { "index": 1538, "index_chain": 1538, "chain_name": "2", "nt_resnum": 1701, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1701", "linked_nts": [ "///2/1700", "///2/1702" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,ss-non-loop,splayed-apart", "alpha": 57.683, "beta": -167.074, "gamma": 78.219, "delta": 147.445, "epsilon": -105.390, "zeta": -54.748, "epsilon_zeta": -50.642, "bb_type": "--", "chi": -110.852, "glyco_bond": "anti", "C5prime_xyz": [ -2.002, 8.380, -1.653 ], "P_xyz": [ 0.555, 8.969, -1.567 ], "form": ".", "ssZp": 0.988, "Dp": 1.070, "splay_angle": 133.652, "splay_distance": 17.748, "splay_ratio": 0.920, "d22": null, "d64": null, "eta": 24.432, "theta": -38.553, "eta_prime": 36.112, "theta_prime": -58.777, "eta_base": 61.295, "theta_base": -24.007, "v0": -21.077, "v1": 35.420, "v2": -35.451, "v3": 24.162, "v4": -2.118, "amplitude": 36.786, "phase_angle": 164.521, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.240, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 194.687, 221.251, 217.192 ], "x_axis": [ -0.918, 0.119, 0.377 ], "y_axis": [ -0.370, 0.076, -0.926 ], "z_axis": [ -0.139, -0.990, -0.026 ], "quaternion": [ -0.182, -0.088, 0.711, -0.674 ] } }, { "index": 1539, "index_chain": 1539, "chain_name": "2", "nt_resnum": 1702, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1702", "linked_nts": [ "///2/1701", "///2/1703" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": -71.524, "beta": -162.691, "gamma": 67.950, "delta": 83.424, "epsilon": -135.173, "zeta": -69.232, "epsilon_zeta": -65.941, "bb_type": "BI", "chi": -167.646, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.658, 0.998 ], "P_xyz": [ 1.244, 8.827, 1.622 ], "form": ".", "ssZp": 4.543, "Dp": 4.678, "splay_angle": 29.329, "splay_distance": 4.553, "splay_ratio": 0.253, "d22": null, "d64": null, "eta": 178.594, "theta": -127.508, "eta_prime": -138.796, "theta_prime": -122.546, "eta_base": -129.362, "theta_base": -73.402, "v0": 3.240, "v1": -24.295, "v2": 34.913, "v3": -33.971, "v4": 19.417, "amplitude": 35.909, "phase_angle": 13.528, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.544, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 191.546, 220.327, 199.748 ], "x_axis": [ 0.182, 0.982, 0.054 ], "y_axis": [ 0.392, -0.123, 0.912 ], "z_axis": [ 0.902, -0.144, -0.407 ], "quaternion": [ 0.404, 0.654, 0.525, 0.365 ] } }, { "index": 1540, "index_chain": 1540, "chain_name": "2", "nt_resnum": 1703, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1703", "linked_nts": [ "///2/1702", "///2/1704" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.201, "beta": 158.590, "gamma": 61.126, "delta": 82.512, "epsilon": -136.465, "zeta": -72.052, "epsilon_zeta": -64.413, "bb_type": "BI", "chi": -161.210, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.725, 0.605 ], "P_xyz": [ 1.361, 8.889, 0.269 ], "form": ".", "ssZp": 4.426, "Dp": 4.696, "splay_angle": 33.755, "splay_distance": 5.251, "splay_ratio": 0.290, "d22": 4.221, "d64": 4.601, "eta": 166.480, "theta": -129.713, "eta_prime": -168.448, "theta_prime": -127.266, "eta_base": -98.820, "theta_base": -90.058, "v0": 3.363, "v1": -24.825, "v2": 35.653, "v3": -34.641, "v4": 19.764, "amplitude": 36.656, "phase_angle": 13.438, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.776, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 195.336, 222.786, 199.184 ], "x_axis": [ 0.465, 0.500, 0.730 ], "y_axis": [ 0.189, -0.862, 0.471 ], "z_axis": [ 0.865, -0.081, -0.495 ], "quaternion": [ 0.164, 0.840, 0.205, 0.475 ] } }, { "index": 1541, "index_chain": 1541, "chain_name": "2", "nt_resnum": 1704, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1704", "linked_nts": [ "///2/1703", "///2/1705" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -55.306, "beta": 158.687, "gamma": 63.071, "delta": 82.017, "epsilon": -155.798, "zeta": -98.722, "epsilon_zeta": -57.076, "bb_type": "BI", "chi": -161.369, "glyco_bond": "anti", "C5prime_xyz": [ -1.229, 8.728, 0.617 ], "P_xyz": [ 1.361, 8.904, 0.232 ], "form": ".", "ssZp": 4.452, "Dp": 4.587, "splay_angle": 37.487, "splay_distance": 5.810, "splay_ratio": 0.322, "d22": 5.876, "d64": 6.130, "eta": 170.503, "theta": -173.271, "eta_prime": -162.986, "theta_prime": -174.876, "eta_base": -103.037, "theta_base": -178.811, "v0": 3.164, "v1": -24.678, "v2": 35.645, "v3": -34.804, "v4": 19.957, "amplitude": 36.702, "phase_angle": 13.786, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 200.499, 223.517, 199.806 ], "x_axis": [ 0.444, -0.327, 0.834 ], "y_axis": [ -0.220, -0.942, -0.253 ], "z_axis": [ 0.869, -0.072, -0.490 ], "quaternion": [ -0.053, 0.848, -0.161, 0.502 ] } }, { "index": 1542, "index_chain": 1542, "chain_name": "2", "nt_resnum": 1705, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1705", "linked_nts": [ "///2/1704", "///2/1706" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,ribose-zipper", "alpha": -67.291, "beta": -179.719, "gamma": 48.161, "delta": 81.450, "epsilon": -153.666, "zeta": -76.536, "epsilon_zeta": -77.130, "bb_type": "BI", "chi": -169.575, "glyco_bond": "anti", "C5prime_xyz": [ -1.266, 8.635, 1.103 ], "P_xyz": [ 1.222, 8.907, 1.888 ], "form": "A", "ssZp": 4.571, "Dp": 4.605, "splay_angle": 23.399, "splay_distance": 3.636, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 170.367, "theta": -153.248, "eta_prime": 165.967, "theta_prime": -151.423, "eta_base": 165.460, "theta_base": -132.463, "v0": 3.146, "v1": -24.854, "v2": 35.926, "v3": -35.095, "v4": 20.147, "amplitude": 37.000, "phase_angle": 13.841, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.484, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 202.613, 226.397, 195.224 ], "x_axis": [ 0.012, -0.330, 0.944 ], "y_axis": [ -0.326, -0.894, -0.309 ], "z_axis": [ 0.945, -0.304, -0.118 ], "quaternion": [ -0.002, 0.711, -0.231, 0.664 ] } }, { "index": 1543, "index_chain": 1543, "chain_name": "2", "nt_resnum": 1706, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1706", "linked_nts": [ "///2/1705", "///2/1707" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,ribose-zipper", "alpha": -65.893, "beta": 170.251, "gamma": 57.313, "delta": 80.885, "epsilon": -156.043, "zeta": -82.176, "epsilon_zeta": -73.867, "bb_type": "BI", "chi": -172.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.595, 1.221 ], "P_xyz": [ 1.198, 8.917, 1.525 ], "form": ".", "ssZp": 4.607, "Dp": 4.613, "splay_angle": 28.266, "splay_distance": 4.367, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 167.385, "theta": -159.199, "eta_prime": 179.580, "theta_prime": -159.261, "eta_base": -147.425, "theta_base": -151.766, "v0": 3.481, "v1": -25.506, "v2": 36.623, "v3": -35.629, "v4": 20.276, "amplitude": 37.652, "phase_angle": 13.432, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.946, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 206.150, 227.241, 195.165 ], "x_axis": [ -0.161, -0.692, 0.704 ], "y_axis": [ -0.298, -0.646, -0.703 ], "z_axis": [ 0.941, -0.323, -0.102 ], "quaternion": [ -0.151, 0.630, -0.393, 0.653 ] } }, { "index": 1544, "index_chain": 1544, "chain_name": "2", "nt_resnum": 1707, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1707", "linked_nts": [ "///2/1706", "///2/1708" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -65.141, "beta": 176.743, "gamma": 56.489, "delta": 80.039, "epsilon": -145.435, "zeta": -63.233, "epsilon_zeta": -82.202, "bb_type": "BI", "chi": -169.282, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.603, 1.068 ], "P_xyz": [ 1.197, 8.987, 1.434 ], "form": ".", "ssZp": 4.639, "Dp": 4.694, "splay_angle": 28.341, "splay_distance": 4.340, "splay_ratio": 0.246, "d22": 3.794, "d64": 4.068, "eta": 174.505, "theta": -134.921, "eta_prime": 179.344, "theta_prime": -132.766, "eta_base": -164.654, "theta_base": -90.008, "v0": 3.643, "v1": -26.130, "v2": 37.464, "v3": -36.358, "v4": 20.620, "amplitude": 38.492, "phase_angle": 13.276, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.880, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 210.192, 228.827, 195.627 ], "x_axis": [ -0.292, -0.856, 0.427 ], "y_axis": [ -0.227, -0.372, -0.900 ], "z_axis": [ 0.929, -0.359, -0.086 ], "quaternion": [ -0.250, 0.540, -0.502, 0.628 ] } }, { "index": 1545, "index_chain": 1545, "chain_name": "2", "nt_resnum": 1708, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1708", "linked_nts": [ "///2/1707", "///2/1709" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -72.369, "beta": 169.533, "gamma": 63.302, "delta": 79.069, "epsilon": -144.347, "zeta": -59.797, "epsilon_zeta": -84.550, "bb_type": "BI", "chi": -174.259, "glyco_bond": "anti", "C5prime_xyz": [ -1.224, 8.536, 1.346 ], "P_xyz": [ 1.384, 8.828, 1.398 ], "form": ".", "ssZp": 4.734, "Dp": 4.734, "splay_angle": 33.384, "splay_distance": 5.303, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 163.746, "theta": -131.467, "eta_prime": -175.382, "theta_prime": -132.858, "eta_base": -109.670, "theta_base": -109.806, "v0": 5.041, "v1": -27.937, "v2": 39.006, "v3": -37.069, "v4": 20.175, "amplitude": 39.795, "phase_angle": 11.428, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.786, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 212.666, 225.466, 196.817 ], "x_axis": [ -0.390, -0.840, -0.376 ], "y_axis": [ 0.050, 0.389, -0.920 ], "z_axis": [ 0.919, -0.378, -0.110 ], "quaternion": [ 0.471, -0.288, 0.687, -0.472 ] } }, { "index": 1546, "index_chain": 1546, "chain_name": "2", "nt_resnum": 1709, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1709", "linked_nts": [ "///2/1708", "///2/1710" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -73.443, "beta": -157.047, "gamma": 40.348, "delta": 78.488, "epsilon": -141.664, "zeta": -83.164, "epsilon_zeta": -58.500, "bb_type": "BI", "chi": 175.657, "glyco_bond": "anti", "C5prime_xyz": [ -1.854, 8.474, 1.843 ], "P_xyz": [ -0.085, 8.857, 3.744 ], "form": "A", "ssZp": 4.622, "Dp": 4.642, "splay_angle": 25.511, "splay_distance": 3.901, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 165.766, "theta": -158.795, "eta_prime": 175.529, "theta_prime": -148.967, "eta_base": -145.345, "theta_base": -114.811, "v0": -1.086, "v1": -22.084, "v2": 35.477, "v3": -37.080, "v4": 24.082, "amplitude": 37.801, "phase_angle": 20.196, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.470, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 215.848, 221.253, 197.311 ], "x_axis": [ -0.813, -0.163, -0.558 ], "y_axis": [ 0.040, 0.942, -0.333 ], "z_axis": [ 0.580, -0.293, -0.760 ], "quaternion": [ 0.304, -0.033, 0.937, -0.167 ] } }, { "index": 1547, "index_chain": 1547, "chain_name": "2", "nt_resnum": 1710, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1710", "linked_nts": [ "///2/1709", "///2/1711" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -77.456, "beta": 175.194, "gamma": 64.834, "delta": 83.076, "epsilon": -161.610, "zeta": -68.662, "epsilon_zeta": -92.948, "bb_type": "BI", "chi": -174.555, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.552, 1.385 ], "P_xyz": [ 1.256, 8.753, 1.825 ], "form": ".", "ssZp": 4.469, "Dp": 4.513, "splay_angle": 25.806, "splay_distance": 4.194, "splay_ratio": 0.231, "d22": 5.223, "d64": 5.351, "eta": 166.078, "theta": -149.384, "eta_prime": 178.017, "theta_prime": -151.236, "eta_base": -141.920, "theta_base": -150.780, "v0": 3.201, "v1": -24.447, "v2": 35.152, "v3": -34.250, "v4": 19.586, "amplitude": 36.167, "phase_angle": 13.607, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.661, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 217.535, 218.340, 195.337 ], "x_axis": [ -0.682, 0.456, -0.571 ], "y_axis": [ 0.492, 0.865, 0.103 ], "z_axis": [ 0.541, -0.211, -0.814 ], "quaternion": [ 0.303, 0.258, 0.917, -0.029 ] } }, { "index": 1548, "index_chain": 1548, "chain_name": "2", "nt_resnum": 1711, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1711", "linked_nts": [ "///2/1710", "///2/1712" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -73.322, "beta": -162.147, "gamma": 46.149, "delta": 81.217, "epsilon": -147.177, "zeta": -80.283, "epsilon_zeta": -66.894, "bb_type": "BI", "chi": -157.962, "glyco_bond": "anti", "C5prime_xyz": [ -1.404, 8.808, 0.406 ], "P_xyz": [ 0.918, 9.479, 1.434 ], "form": "A", "ssZp": 4.278, "Dp": 4.554, "splay_angle": 21.525, "splay_distance": 3.407, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 172.919, "theta": -153.283, "eta_prime": 176.929, "theta_prime": -147.825, "eta_base": -173.911, "theta_base": -112.786, "v0": 0.092, "v1": -21.916, "v2": 34.176, "v3": -35.078, "v4": 22.070, "amplitude": 36.032, "phase_angle": 18.474, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.648, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 218.518, 214.598, 193.720 ], "x_axis": [ -0.527, 0.765, -0.369 ], "y_axis": [ 0.735, 0.629, 0.254 ], "z_axis": [ 0.427, -0.137, -0.894 ], "quaternion": [ 0.228, 0.430, 0.873, 0.034 ] } }, { "index": 1549, "index_chain": 1549, "chain_name": "2", "nt_resnum": 1712, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1712", "linked_nts": [ "///2/1711", "///2/1713" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.097, "beta": 164.178, "gamma": 50.244, "delta": 83.198, "epsilon": -149.260, "zeta": -75.958, "epsilon_zeta": -73.303, "bb_type": "BI", "chi": -160.687, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.697, 0.601 ], "P_xyz": [ 1.349, 8.909, 0.829 ], "form": "A", "ssZp": 4.382, "Dp": 4.579, "splay_angle": 18.623, "splay_distance": 2.959, "splay_ratio": 0.162, "d22": null, "d64": null, "eta": 165.900, "theta": -144.019, "eta_prime": 179.638, "theta_prime": -143.874, "eta_base": -135.677, "theta_base": -115.463, "v0": 2.518, "v1": -23.511, "v2": 34.384, "v3": -33.888, "v4": 19.802, "amplitude": 35.540, "phase_angle": 14.649, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.881, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 219.055, 214.366, 190.364 ], "x_axis": [ -0.088, 0.996, 0.009 ], "y_axis": [ 0.925, 0.079, 0.373 ], "z_axis": [ 0.371, 0.042, -0.928 ], "quaternion": [ 0.125, 0.663, 0.724, 0.143 ] } }, { "index": 1550, "index_chain": 1550, "chain_name": "2", "nt_resnum": 1713, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1713", "linked_nts": [ "///2/1712", "///2/1714" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.427, "beta": 162.546, "gamma": 56.703, "delta": 83.096, "epsilon": -120.807, "zeta": -130.425, "epsilon_zeta": 9.617, "bb_type": "--", "chi": -151.858, "glyco_bond": "anti", "C5prime_xyz": [ -1.428, 8.820, 0.061 ], "P_xyz": [ 1.163, 9.149, -0.201 ], "form": ".", "ssZp": 3.918, "Dp": 4.648, "splay_angle": 24.846, "splay_distance": 4.052, "splay_ratio": 0.225, "d22": 5.353, "d64": 4.971, "eta": 175.706, "theta": -172.207, "eta_prime": -171.167, "theta_prime": -167.368, "eta_base": -130.691, "theta_base": -152.586, "v0": 0.972, "v1": -22.256, "v2": 33.863, "v3": -34.236, "v4": 21.010, "amplitude": 35.425, "phase_angle": 17.078, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 219.114, 215.200, 187.525 ], "x_axis": [ 0.433, 0.889, 0.151 ], "y_axis": [ 0.884, -0.451, 0.119 ], "z_axis": [ 0.173, 0.082, -0.981 ], "quaternion": [ 0.011, 0.847, 0.524, 0.096 ] } }, { "index": 1551, "index_chain": 1551, "chain_name": "2", "nt_resnum": 1714, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1714", "linked_nts": [ "///2/1713", "///2/1715" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -44.356, "beta": 115.363, "gamma": 64.601, "delta": 81.816, "epsilon": -96.717, "zeta": -116.323, "epsilon_zeta": 19.606, "bb_type": "--", "chi": -148.259, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.764, -0.189 ], "P_xyz": [ 0.719, 8.238, -1.527 ], "form": ".", "ssZp": 3.398, "Dp": 4.665, "splay_angle": 27.049, "splay_distance": 4.648, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": -176.794, "theta": -102.224, "eta_prime": -171.317, "theta_prime": -120.544, "eta_base": -156.891, "theta_base": -106.136, "v0": 1.487, "v1": -23.295, "v2": 35.020, "v3": -35.121, "v4": 21.233, "amplitude": 36.492, "phase_angle": 16.327, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.144, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 219.361, 214.404, 183.560 ], "x_axis": [ 0.654, 0.757, 0.002 ], "y_axis": [ 0.754, -0.650, -0.095 ], "z_axis": [ -0.071, 0.063, -0.995 ], "quaternion": [ -0.044, 0.908, 0.416, -0.019 ] } }, { "index": 1552, "index_chain": 1552, "chain_name": "2", "nt_resnum": 1715, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1715", "linked_nts": [ "///2/1714", "///2/1716" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 103.612, "beta": -119.782, "gamma": -165.438, "delta": 81.293, "epsilon": -144.785, "zeta": -75.678, "epsilon_zeta": -69.107, "bb_type": "BI", "chi": -171.406, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.551, 1.193 ], "P_xyz": [ -0.335, 9.997, -0.713 ], "form": "A", "ssZp": 4.638, "Dp": 4.675, "splay_angle": 27.599, "splay_distance": 4.325, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 147.483, "theta": -171.282, "eta_prime": 171.122, "theta_prime": -168.463, "eta_base": -148.095, "theta_base": -140.919, "v0": 3.344, "v1": -25.221, "v2": 36.329, "v3": -35.400, "v4": 20.217, "amplitude": 37.377, "phase_angle": 13.602, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 221.368, 216.658, 180.025 ], "x_axis": [ 0.791, 0.251, 0.558 ], "y_axis": [ 0.371, -0.922, -0.110 ], "z_axis": [ 0.486, 0.294, -0.823 ], "quaternion": [ -0.108, 0.940, 0.165, 0.278 ] } }, { "index": 1553, "index_chain": 1553, "chain_name": "2", "nt_resnum": 1716, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1716", "linked_nts": [ "///2/1715", "///2/1717" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -57.501, "beta": 175.644, "gamma": 52.982, "delta": 80.578, "epsilon": -118.547, "zeta": -90.827, "epsilon_zeta": -27.720, "bb_type": "--", "chi": -158.924, "glyco_bond": "anti", "C5prime_xyz": [ -1.310, 8.777, 0.462 ], "P_xyz": [ 1.270, 9.188, 0.667 ], "form": "A", "ssZp": 4.219, "Dp": 4.740, "splay_angle": 26.306, "splay_distance": 4.201, "splay_ratio": 0.228, "d22": 3.858, "d64": 3.529, "eta": -178.037, "theta": -139.689, "eta_prime": -168.250, "theta_prime": -135.850, "eta_base": -134.774, "theta_base": -102.646, "v0": 2.201, "v1": -24.402, "v2": 36.096, "v3": -35.825, "v4": 21.199, "amplitude": 37.425, "phase_angle": 15.314, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 223.440, 219.621, 177.651 ], "x_axis": [ 0.861, -0.322, 0.393 ], "y_axis": [ -0.142, -0.895, -0.422 ], "z_axis": [ 0.488, 0.308, -0.817 ], "quaternion": [ -0.193, 0.945, -0.123, 0.233 ] } }, { "index": 1554, "index_chain": 1554, "chain_name": "2", "nt_resnum": 1717, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1717", "linked_nts": [ "///2/1716", "///2/1718" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.128, "beta": 151.255, "gamma": 59.365, "delta": 79.232, "epsilon": -143.944, "zeta": -62.311, "epsilon_zeta": -81.633, "bb_type": "BI", "chi": -168.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.400, 8.707, 1.026 ], "P_xyz": [ 1.186, 9.005, 0.770 ], "form": ".", "ssZp": 4.615, "Dp": 4.683, "splay_angle": 27.637, "splay_distance": 4.272, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 157.030, "theta": -129.774, "eta_prime": 173.668, "theta_prime": -130.556, "eta_base": -138.774, "theta_base": -85.236, "v0": 1.783, "v1": -24.788, "v2": 37.080, "v3": -37.020, "v4": 22.213, "amplitude": 38.569, "phase_angle": 15.972, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.368, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 226.954, 220.159, 175.412 ], "x_axis": [ 0.310, -0.860, 0.406 ], "y_axis": [ -0.614, -0.507, -0.605 ], "z_axis": [ 0.726, -0.062, -0.685 ], "quaternion": [ -0.172, 0.791, -0.466, 0.358 ] } }, { "index": 1555, "index_chain": 1555, "chain_name": "2", "nt_resnum": 1718, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1718", "linked_nts": [ "///2/1717", "///2/1719" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -68.546, "beta": 164.861, "gamma": 62.435, "delta": 81.232, "epsilon": -116.904, "zeta": -165.875, "epsilon_zeta": 48.971, "bb_type": "BII", "chi": -171.203, "glyco_bond": "anti", "C5prime_xyz": [ -1.396, 8.598, 1.177 ], "P_xyz": [ 1.209, 8.936, 1.169 ], "form": ".", "ssZp": 4.606, "Dp": 4.776, "splay_angle": 53.602, "splay_distance": 7.853, "splay_ratio": 0.452, "d22": null, "d64": null, "eta": 170.732, "theta": 152.117, "eta_prime": -168.587, "theta_prime": 161.883, "eta_base": -100.715, "theta_base": 168.604, "v0": 3.852, "v1": -25.739, "v2": 36.676, "v3": -35.445, "v4": 19.943, "amplitude": 37.622, "phase_angle": 12.874, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.809, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 230.033, 217.348, 174.483 ], "x_axis": [ -0.266, -0.945, -0.192 ], "y_axis": [ -0.601, 0.319, -0.733 ], "z_axis": [ 0.753, -0.079, -0.653 ], "quaternion": [ 0.316, -0.517, 0.748, -0.271 ] } }, { "index": 1556, "index_chain": 1556, "chain_name": "2", "nt_resnum": 1719, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1719", "linked_nts": [ "///2/1718", "///2/1720" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -45.304, "beta": 129.707, "gamma": 40.746, "delta": 80.396, "epsilon": -123.621, "zeta": -62.858, "epsilon_zeta": -60.763, "bb_type": "--", "chi": -168.605, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.579, 1.034 ], "P_xyz": [ 1.287, 8.263, 0.939 ], "form": ".", "ssZp": 4.587, "Dp": 4.781, "splay_angle": 41.361, "splay_distance": 6.434, "splay_ratio": 0.354, "d22": null, "d64": null, "eta": -178.221, "theta": -105.828, "eta_prime": 173.634, "theta_prime": -102.756, "eta_base": 161.698, "theta_base": -70.609, "v0": 4.228, "v1": -26.247, "v2": 37.145, "v3": -35.697, "v4": 19.853, "amplitude": 38.028, "phase_angle": 12.372, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.224, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 235.277, 223.040, 173.154 ], "x_axis": [ -0.220, -0.963, 0.155 ], "y_axis": [ -0.691, 0.042, -0.722 ], "z_axis": [ 0.689, -0.266, -0.675 ], "quaternion": [ 0.192, -0.594, 0.696, -0.355 ] } }, { "index": 1557, "index_chain": 1557, "chain_name": "2", "nt_resnum": 1720, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1720", "linked_nts": [ "///2/1719", "///2/1721" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": -56.302, "beta": 157.720, "gamma": 69.565, "delta": 80.035, "epsilon": -135.238, "zeta": 63.740, "epsilon_zeta": 161.022, "bb_type": "--", "chi": -168.131, "glyco_bond": "anti", "C5prime_xyz": [ -1.615, 8.691, 0.985 ], "P_xyz": [ 0.925, 9.244, 0.652 ], "form": ".", "ssZp": 4.559, "Dp": 4.676, "splay_angle": 104.826, "splay_distance": 16.148, "splay_ratio": 0.796, "d22": 9.833, "d64": 12.585, "eta": 173.040, "theta": -14.967, "eta_prime": -155.357, "theta_prime": -27.886, "eta_base": -92.166, "theta_base": -49.033, "v0": 0.336, "v1": -22.981, "v2": 35.591, "v3": -36.380, "v4": 22.733, "amplitude": 37.443, "phase_angle": 18.097, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.396, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 235.837, 217.400, 170.109 ], "x_axis": [ -0.707, -0.459, -0.538 ], "y_axis": [ -0.166, 0.848, -0.504 ], "z_axis": [ 0.687, -0.266, -0.676 ], "quaternion": [ 0.341, -0.174, 0.899, -0.214 ] } }, { "index": 1558, "index_chain": 1558, "chain_name": "2", "nt_resnum": 1721, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1721", "linked_nts": [ "///2/1720", "///2/1722" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,internal-loop,splayed-apart", "alpha": -163.436, "beta": 128.840, "gamma": -161.629, "delta": 80.944, "epsilon": -154.882, "zeta": 165.096, "epsilon_zeta": 40.021, "bb_type": "--", "chi": -160.677, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.728, 0.561 ], "P_xyz": [ -1.784, 11.235, -0.112 ], "form": ".", "ssZp": 4.442, "Dp": 4.595, "splay_angle": 133.904, "splay_distance": 18.573, "splay_ratio": 0.921, "d22": null, "d64": null, "eta": -135.923, "theta": 44.528, "eta_prime": -106.963, "theta_prime": 59.202, "eta_base": -55.232, "theta_base": 98.906, "v0": 2.022, "v1": -24.216, "v2": 35.984, "v3": -35.807, "v4": 21.286, "amplitude": 37.354, "phase_angle": 15.569, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 234.759, 223.197, 155.075 ], "x_axis": [ 0.655, 0.534, -0.535 ], "y_axis": [ 0.575, 0.107, 0.811 ], "z_axis": [ 0.491, -0.839, -0.237 ], "quaternion": [ 0.617, 0.668, 0.415, -0.017 ] } }, { "index": 1559, "index_chain": 1559, "chain_name": "2", "nt_resnum": 1722, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1722", "linked_nts": [ "///2/1721", "///2/1723" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 36.498, "beta": -171.023, "gamma": -75.234, "delta": 82.118, "epsilon": -145.742, "zeta": -86.776, "epsilon_zeta": -58.965, "bb_type": "BI", "chi": -156.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.256, 8.752, 0.335 ], "P_xyz": [ -0.686, 11.239, 0.921 ], "form": ".", "ssZp": 4.336, "Dp": 4.658, "splay_angle": 28.514, "splay_distance": 4.413, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": -178.743, "theta": 162.263, "eta_prime": 162.114, "theta_prime": 179.455, "eta_base": 130.853, "theta_base": -139.580, "v0": 3.465, "v1": -24.880, "v2": 35.639, "v3": -34.645, "v4": 19.689, "amplitude": 36.626, "phase_angle": 13.330, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 235.825, 212.014, 169.865 ], "x_axis": [ -0.945, -0.055, -0.324 ], "y_axis": [ 0.212, 0.651, -0.729 ], "z_axis": [ 0.250, -0.758, -0.603 ], "quaternion": [ 0.160, 0.044, 0.894, -0.416 ] } }, { "index": 1560, "index_chain": 1560, "chain_name": "2", "nt_resnum": 1723, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1723", "linked_nts": [ "///2/1722", "///2/1724" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.760, "beta": 158.166, "gamma": 59.535, "delta": 82.540, "epsilon": -143.135, "zeta": -70.790, "epsilon_zeta": -72.345, "bb_type": "BI", "chi": -163.579, "glyco_bond": "anti", "C5prime_xyz": [ -1.105, 8.633, 0.746 ], "P_xyz": [ 1.496, 8.682, 0.402 ], "form": "A", "ssZp": 4.538, "Dp": 4.713, "splay_angle": 27.681, "splay_distance": 4.301, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 173.480, "theta": -134.432, "eta_prime": -173.525, "theta_prime": -135.247, "eta_base": -135.604, "theta_base": -107.020, "v0": 5.966, "v1": -27.053, "v2": 36.720, "v3": -34.282, "v4": 17.889, "amplitude": 37.243, "phase_angle": 9.619, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.715, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 236.095, 208.294, 167.507 ], "x_axis": [ -0.706, 0.335, -0.624 ], "y_axis": [ 0.668, 0.607, -0.430 ], "z_axis": [ 0.235, -0.720, -0.652 ], "quaternion": [ 0.249, 0.291, 0.861, -0.334 ] } }, { "index": 1561, "index_chain": 1561, "chain_name": "2", "nt_resnum": 1724, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1724", "linked_nts": [ "///2/1723", "///2/1725" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.838, "beta": 169.928, "gamma": 56.500, "delta": 79.888, "epsilon": -144.078, "zeta": -76.998, "epsilon_zeta": -67.079, "bb_type": "BI", "chi": -163.570, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.659, 0.721 ], "P_xyz": [ 1.308, 9.001, 0.719 ], "form": "A", "ssZp": 4.535, "Dp": 4.709, "splay_angle": 27.620, "splay_distance": 4.382, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 170.339, "theta": -144.948, "eta_prime": -172.154, "theta_prime": -143.145, "eta_base": -123.866, "theta_base": -122.731, "v0": 3.797, "v1": -26.217, "v2": 37.488, "v3": -36.297, "v4": 20.491, "amplitude": 38.484, "phase_angle": 13.065, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 235.064, 205.809, 164.150 ], "x_axis": [ -0.148, 0.696, -0.703 ], "y_axis": [ 0.968, 0.249, 0.043 ], "z_axis": [ 0.204, -0.674, -0.710 ], "quaternion": [ 0.312, 0.573, 0.726, -0.217 ] } }, { "index": 1562, "index_chain": 1562, "chain_name": "2", "nt_resnum": 1725, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1725", "linked_nts": [ "///2/1724", "///2/1726" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.224, "beta": 167.983, "gamma": 57.365, "delta": 78.103, "epsilon": -128.003, "zeta": -91.795, "epsilon_zeta": -36.208, "bb_type": "--", "chi": -161.991, "glyco_bond": "anti", "C5prime_xyz": [ -1.559, 8.753, 0.613 ], "P_xyz": [ 0.989, 9.343, 0.517 ], "form": ".", "ssZp": 4.419, "Dp": 4.754, "splay_angle": 19.960, "splay_distance": 3.508, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 177.941, "theta": -115.944, "eta_prime": -170.485, "theta_prime": -131.265, "eta_base": -138.706, "theta_base": -123.470, "v0": 1.113, "v1": -24.496, "v2": 37.313, "v3": -37.707, "v4": 23.051, "amplitude": 39.022, "phase_angle": 17.018, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 234.144, 203.547, 160.512 ], "x_axis": [ 0.335, 0.763, -0.553 ], "y_axis": [ 0.919, -0.135, 0.370 ], "z_axis": [ 0.207, -0.632, -0.746 ], "quaternion": [ 0.337, 0.744, 0.565, -0.116 ] } }, { "index": 1563, "index_chain": 1563, "chain_name": "2", "nt_resnum": 1726, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1726", "linked_nts": [ "///2/1725", "///2/1727" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 153.870, "beta": -165.383, "gamma": 161.864, "delta": 82.462, "epsilon": -156.537, "zeta": -72.492, "epsilon_zeta": -84.045, "bb_type": "BI", "chi": -169.923, "glyco_bond": "anti", "C5prime_xyz": [ -1.525, 8.659, 1.101 ], "P_xyz": [ 0.194, 10.158, -0.199 ], "form": "A", "ssZp": 4.507, "Dp": 4.540, "splay_angle": 21.082, "splay_distance": 3.324, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 132.475, "theta": -169.311, "eta_prime": 154.415, "theta_prime": -168.376, "eta_base": -177.321, "theta_base": -141.987, "v0": 1.531, "v1": -22.988, "v2": 34.409, "v3": -34.506, "v4": 20.821, "amplitude": 35.836, "phase_angle": 16.221, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.162, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 233.462, 203.049, 157.107 ], "x_axis": [ 0.414, 0.847, 0.335 ], "y_axis": [ 0.755, -0.524, 0.393 ], "z_axis": [ 0.509, 0.090, -0.856 ], "quaternion": [ 0.091, 0.836, 0.479, 0.252 ] } }, { "index": 1564, "index_chain": 1564, "chain_name": "2", "nt_resnum": 1727, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1727", "linked_nts": [ "///2/1726", "///2/1728" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -68.199, "beta": -179.783, "gamma": 55.046, "delta": 85.315, "epsilon": -139.991, "zeta": -84.339, "epsilon_zeta": -55.653, "bb_type": "BI", "chi": -158.902, "glyco_bond": "anti", "C5prime_xyz": [ -1.239, 8.786, 0.531 ], "P_xyz": [ 1.308, 9.076, 1.123 ], "form": ".", "ssZp": 4.222, "Dp": 4.521, "splay_angle": 13.500, "splay_distance": 2.200, "splay_ratio": 0.120, "d22": null, "d64": null, "eta": 175.289, "theta": -142.898, "eta_prime": -174.794, "theta_prime": -140.294, "eta_base": -140.850, "theta_base": -99.751, "v0": 1.178, "v1": -21.103, "v2": 31.834, "v3": -32.067, "v4": 19.535, "amplitude": 33.229, "phase_angle": 16.661, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 233.789, 204.460, 154.115 ], "x_axis": [ 0.726, 0.389, 0.567 ], "y_axis": [ 0.425, -0.902, 0.075 ], "z_axis": [ 0.541, 0.186, -0.820 ], "quaternion": [ -0.030, 0.929, 0.219, 0.298 ] } }, { "index": 1565, "index_chain": 1565, "chain_name": "2", "nt_resnum": 1728, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1728", "linked_nts": [ "///2/1727", "///2/1729" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,bulge", "alpha": -50.675, "beta": 158.335, "gamma": 42.723, "delta": 84.458, "epsilon": -97.113, "zeta": -146.877, "epsilon_zeta": 49.764, "bb_type": "--", "chi": -136.681, "glyco_bond": "anti", "C5prime_xyz": [ -1.390, 8.628, -0.837 ], "P_xyz": [ 1.212, 8.782, -1.157 ], "form": ".", "ssZp": 2.684, "Dp": 4.633, "splay_angle": 26.372, "splay_distance": 4.573, "splay_ratio": 0.252, "d22": 5.136, "d64": 4.213, "eta": 176.768, "theta": -170.233, "eta_prime": -171.794, "theta_prime": -161.839, "eta_base": -124.246, "theta_base": -148.622, "v0": 2.888, "v1": -23.228, "v2": 33.656, "v3": -32.915, "v4": 18.993, "amplitude": 34.684, "phase_angle": 13.983, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.595, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 235.442, 205.121, 152.824 ], "x_axis": [ 0.850, -0.188, 0.492 ], "y_axis": [ 0.132, -0.828, -0.545 ], "z_axis": [ 0.510, 0.528, -0.679 ], "quaternion": [ -0.293, 0.916, -0.015, 0.273 ] } }, { "index": 1566, "index_chain": 1566, "chain_name": "2", "nt_resnum": 1729, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1729", "linked_nts": [ "///2/1728", "///2/1730" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -50.159, "beta": 107.815, "gamma": 58.543, "delta": 81.464, "epsilon": -151.860, "zeta": -84.294, "epsilon_zeta": -67.566, "bb_type": "BI", "chi": -136.656, "glyco_bond": "anti", "C5prime_xyz": [ -1.543, 8.676, -0.877 ], "P_xyz": [ 0.571, 7.755, -2.123 ], "form": ".", "ssZp": 3.535, "Dp": 4.586, "splay_angle": 41.171, "splay_distance": 6.546, "splay_ratio": 0.352, "d22": 4.548, "d64": 5.020, "eta": 158.348, "theta": -139.403, "eta_prime": 172.703, "theta_prime": -151.263, "eta_base": -169.929, "theta_base": -138.957, "v0": 1.830, "v1": -23.509, "v2": 35.077, "v3": -34.964, "v4": 20.917, "amplitude": 36.454, "phase_angle": 15.796, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.010, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 236.938, 206.146, 148.625 ], "x_axis": [ 0.811, -0.379, 0.446 ], "y_axis": [ 0.030, -0.734, -0.679 ], "z_axis": [ 0.584, 0.564, -0.584 ], "quaternion": [ -0.351, 0.884, -0.099, 0.291 ] } }, { "index": 1567, "index_chain": 1567, "chain_name": "2", "nt_resnum": 1730, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1730", "linked_nts": [ "///2/1729", "///2/1731" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -49.360, "beta": 169.227, "gamma": 52.957, "delta": 81.390, "epsilon": -109.170, "zeta": -82.540, "epsilon_zeta": -26.630, "bb_type": "--", "chi": -167.007, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.627, 0.956 ], "P_xyz": [ 1.226, 8.930, 1.277 ], "form": ".", "ssZp": 4.414, "Dp": 4.745, "splay_angle": 27.771, "splay_distance": 4.417, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": -169.250, "theta": -120.750, "eta_prime": -163.988, "theta_prime": -119.041, "eta_base": -141.411, "theta_base": -78.967, "v0": 3.082, "v1": -24.865, "v2": 36.025, "v3": -35.254, "v4": 20.295, "amplitude": 37.125, "phase_angle": 13.980, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.719, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 241.791, 208.760, 145.095 ], "x_axis": [ 0.433, -0.820, 0.373 ], "y_axis": [ -0.624, -0.572, -0.532 ], "z_axis": [ 0.650, -0.002, -0.760 ], "quaternion": [ -0.159, 0.831, -0.434, 0.308 ] } }, { "index": 1568, "index_chain": 1568, "chain_name": "2", "nt_resnum": 1731, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1731", "linked_nts": [ "///2/1730", "///2/1732" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -65.012, "beta": 165.586, "gamma": 44.457, "delta": 80.337, "epsilon": -147.858, "zeta": -78.003, "epsilon_zeta": -69.855, "bb_type": "BI", "chi": -167.235, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.635, 0.949 ], "P_xyz": [ 1.081, 9.022, 1.410 ], "form": "A", "ssZp": 4.574, "Dp": 4.651, "splay_angle": 21.411, "splay_distance": 3.450, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 146.073, "theta": -148.644, "eta_prime": 166.198, "theta_prime": -147.232, "eta_base": -135.201, "theta_base": -127.477, "v0": 2.403, "v1": -24.626, "v2": 36.242, "v3": -35.884, "v4": 21.122, "amplitude": 37.528, "phase_angle": 15.042, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.252, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 244.856, 205.997, 143.519 ], "x_axis": [ -0.609, -0.723, 0.325 ], "y_axis": [ -0.671, 0.252, -0.697 ], "z_axis": [ 0.422, -0.643, -0.639 ], "quaternion": [ 0.031, -0.441, 0.791, -0.424 ] } }, { "index": 1569, "index_chain": 1569, "chain_name": "2", "nt_resnum": 1732, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1732", "linked_nts": [ "///2/1731", "///2/1733" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.532, "beta": 171.051, "gamma": 50.128, "delta": 80.760, "epsilon": -167.653, "zeta": -79.327, "epsilon_zeta": -88.326, "bb_type": "BI", "chi": -160.615, "glyco_bond": "anti", "C5prime_xyz": [ -1.470, 8.822, 0.561 ], "P_xyz": [ 1.074, 9.341, 0.918 ], "form": "A", "ssZp": 4.338, "Dp": 4.438, "splay_angle": 24.232, "splay_distance": 4.123, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 168.015, "theta": -133.513, "eta_prime": -178.627, "theta_prime": -140.913, "eta_base": -144.914, "theta_base": -122.673, "v0": 0.111, "v1": -22.193, "v2": 34.579, "v3": -35.485, "v4": 22.317, "amplitude": 36.452, "phase_angle": 18.447, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.918, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 247.044, 203.358, 143.131 ], "x_axis": [ -0.912, -0.410, 0.013 ], "y_axis": [ -0.240, 0.508, -0.827 ], "z_axis": [ 0.333, -0.757, -0.562 ], "quaternion": [ 0.093, -0.188, 0.863, -0.459 ] } }, { "index": 1570, "index_chain": 1570, "chain_name": "2", "nt_resnum": 1733, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1733", "linked_nts": [ "///2/1732", "///2/1734" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 161.684, "beta": -153.742, "gamma": 171.184, "delta": 82.351, "epsilon": -117.681, "zeta": -76.081, "epsilon_zeta": -41.599, "bb_type": "--", "chi": -176.651, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.499, 1.504 ], "P_xyz": [ 0.375, 10.012, 0.424 ], "form": ".", "ssZp": 4.595, "Dp": 4.678, "splay_angle": 35.201, "splay_distance": 5.460, "splay_ratio": 0.302, "d22": null, "d64": null, "eta": 172.702, "theta": -142.161, "eta_prime": -174.854, "theta_prime": -134.159, "eta_base": -140.193, "theta_base": -82.590, "v0": 1.710, "v1": -23.113, "v2": 34.522, "v3": -34.505, "v4": 20.679, "amplitude": 35.904, "phase_angle": 15.947, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.784, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 247.884, 199.330, 142.870 ], "x_axis": [ -0.919, -0.136, -0.371 ], "y_axis": [ 0.220, 0.606, -0.764 ], "z_axis": [ 0.329, -0.784, -0.527 ], "quaternion": [ 0.200, 0.024, 0.873, -0.443 ] } }, { "index": 1571, "index_chain": 1571, "chain_name": "2", "nt_resnum": 1734, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1734", "linked_nts": [ "///2/1733", "///2/1735" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -49.390, "beta": 147.395, "gamma": 59.065, "delta": 83.443, "epsilon": -133.929, "zeta": -163.666, "epsilon_zeta": 29.737, "bb_type": "--", "chi": -168.296, "glyco_bond": "anti", "C5prime_xyz": [ -1.566, 8.704, 1.018 ], "P_xyz": [ 1.042, 8.939, 0.884 ], "form": ".", "ssZp": 4.488, "Dp": 4.609, "splay_angle": 66.456, "splay_distance": 9.689, "splay_ratio": 0.549, "d22": null, "d64": null, "eta": 164.959, "theta": 145.761, "eta_prime": -164.816, "theta_prime": 152.127, "eta_base": -93.161, "theta_base": 165.512, "v0": 0.239, "v1": -21.546, "v2": 33.393, "v3": -34.196, "v4": 21.443, "amplitude": 35.158, "phase_angle": 18.232, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.767, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 246.086, 196.690, 138.441 ], "x_axis": [ -0.297, 0.461, -0.836 ], "y_axis": [ 0.895, 0.439, -0.076 ], "z_axis": [ 0.331, -0.771, -0.544 ], "quaternion": [ 0.387, 0.449, 0.755, -0.281 ] } }, { "index": 1572, "index_chain": 1572, "chain_name": "2", "nt_resnum": 1735, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1735", "linked_nts": [ "///2/1734", "///2/1736" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper", "alpha": -46.719, "beta": 137.476, "gamma": 50.537, "delta": 82.689, "epsilon": -123.406, "zeta": -70.482, "epsilon_zeta": -52.924, "bb_type": "--", "chi": 178.030, "glyco_bond": "anti", "C5prime_xyz": [ -1.589, 8.369, 1.774 ], "P_xyz": [ 1.017, 8.267, 2.039 ], "form": ".", "ssZp": 4.645, "Dp": 4.675, "splay_angle": 34.164, "splay_distance": 5.194, "splay_ratio": 0.294, "d22": null, "d64": null, "eta": -168.386, "theta": -114.009, "eta_prime": -177.899, "theta_prime": -113.750, "eta_base": 170.332, "theta_base": -66.650, "v0": 1.632, "v1": -22.932, "v2": 34.288, "v3": -34.327, "v4": 20.627, "amplitude": 35.682, "phase_angle": 16.065, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.450, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 250.348, 189.147, 142.778 ], "x_axis": [ -0.746, 0.332, -0.577 ], "y_axis": [ 0.564, 0.775, -0.283 ], "z_axis": [ 0.353, -0.537, -0.766 ], "quaternion": [ 0.256, 0.247, 0.907, -0.226 ] } }, { "index": 1573, "index_chain": 1573, "chain_name": "2", "nt_resnum": 1736, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1736", "linked_nts": [ "///2/1735", "///2/1737" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,ribose-zipper", "alpha": -58.266, "beta": 162.415, "gamma": 50.677, "delta": 82.241, "epsilon": -143.028, "zeta": -85.112, "epsilon_zeta": -57.916, "bb_type": "BI", "chi": -170.351, "glyco_bond": "anti", "C5prime_xyz": [ -1.253, 8.575, 1.158 ], "P_xyz": [ 1.351, 8.674, 1.449 ], "form": "A", "ssZp": 4.626, "Dp": 4.686, "splay_angle": 22.674, "splay_distance": 3.488, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 157.963, "theta": -148.395, "eta_prime": -175.254, "theta_prime": -148.018, "eta_base": -98.801, "theta_base": -127.165, "v0": 4.628, "v1": -25.966, "v2": 36.281, "v3": -34.611, "v4": 18.909, "amplitude": 37.038, "phase_angle": 11.603, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.623, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 249.846, 189.006, 137.610 ], "x_axis": [ 0.122, 0.872, -0.474 ], "y_axis": [ 0.899, 0.106, 0.426 ], "z_axis": [ 0.421, -0.477, -0.771 ], "quaternion": [ 0.338, 0.668, 0.662, -0.019 ] } }, { "index": 1574, "index_chain": 1574, "chain_name": "2", "nt_resnum": 1737, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1737", "linked_nts": [ "///2/1736", "///2/1738" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -57.092, "beta": 158.549, "gamma": 56.851, "delta": 81.698, "epsilon": -147.960, "zeta": -73.630, "epsilon_zeta": -74.330, "bb_type": "BI", "chi": -171.014, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.601, 1.178 ], "P_xyz": [ 1.261, 8.810, 1.225 ], "form": "A", "ssZp": 4.621, "Dp": 4.654, "splay_angle": 24.322, "splay_distance": 3.739, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 168.344, "theta": -141.723, "eta_prime": -178.170, "theta_prime": -142.804, "eta_base": -140.779, "theta_base": -112.317, "v0": 3.565, "v1": -25.235, "v2": 36.110, "v3": -35.053, "v4": 19.881, "amplitude": 37.095, "phase_angle": 13.233, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.770, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 249.794, 187.489, 134.470 ], "x_axis": [ 0.544, 0.818, -0.189 ], "y_axis": [ 0.735, -0.355, 0.578 ], "z_axis": [ 0.406, -0.453, -0.794 ], "quaternion": [ 0.314, 0.821, 0.473, 0.066 ] } }, { "index": 1575, "index_chain": 1575, "chain_name": "2", "nt_resnum": 1738, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1738", "linked_nts": [ "///2/1737", "///2/1739" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -62.070, "beta": 170.373, "gamma": 54.539, "delta": 80.964, "epsilon": -141.807, "zeta": -73.078, "epsilon_zeta": -68.729, "bb_type": "BI", "chi": -168.453, "glyco_bond": "anti", "C5prime_xyz": [ -1.154, 8.627, 1.033 ], "P_xyz": [ 1.450, 8.805, 1.297 ], "form": "A", "ssZp": 4.624, "Dp": 4.707, "splay_angle": 24.168, "splay_distance": 3.817, "splay_ratio": 0.212, "d22": 4.166, "d64": 4.166, "eta": 169.908, "theta": -139.633, "eta_prime": -175.995, "theta_prime": -138.544, "eta_base": -127.379, "theta_base": -112.601, "v0": 4.173, "v1": -26.112, "v2": 36.954, "v3": -35.547, "v4": 19.767, "amplitude": 37.838, "phase_angle": 12.412, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.985, "filter_rmsd": 0.065, "frame": { "rmsd": 0.003, "origin": [ 250.884, 187.358, 130.896 ], "x_axis": [ 0.879, 0.422, 0.223 ], "y_axis": [ 0.234, -0.788, 0.569 ], "z_axis": [ 0.416, -0.448, -0.792 ], "quaternion": [ 0.273, 0.930, 0.176, 0.172 ] } }, { "index": 1576, "index_chain": 1576, "chain_name": "2", "nt_resnum": 1739, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1739", "linked_nts": [ "///2/1738", "///2/1740" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -66.316, "beta": 176.781, "gamma": 51.457, "delta": 80.184, "epsilon": -149.247, "zeta": -74.958, "epsilon_zeta": -74.289, "bb_type": "BI", "chi": -166.975, "glyco_bond": "anti", "C5prime_xyz": [ -1.338, 8.709, 0.934 ], "P_xyz": [ 1.201, 9.112, 1.440 ], "form": "A", "ssZp": 4.573, "Dp": 4.642, "splay_angle": 21.228, "splay_distance": 3.373, "splay_ratio": 0.187, "d22": 4.221, "d64": 4.226, "eta": 164.773, "theta": -148.755, "eta_prime": 178.236, "theta_prime": -146.503, "eta_base": -139.786, "theta_base": -121.643, "v0": 2.145, "v1": -24.567, "v2": 36.411, "v3": -36.184, "v4": 21.455, "amplitude": 37.772, "phase_angle": 15.428, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.970, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 253.036, 187.509, 127.747 ], "x_axis": [ 0.709, -0.000, 0.706 ], "y_axis": [ -0.311, -0.898, 0.312 ], "z_axis": [ 0.633, -0.441, -0.636 ], "quaternion": [ 0.209, 0.900, -0.086, 0.372 ] } }, { "index": 1577, "index_chain": 1577, "chain_name": "2", "nt_resnum": 1740, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1740", "linked_nts": [ "///2/1739", "///2/1741" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -64.917, "beta": 170.210, "gamma": 58.399, "delta": 82.380, "epsilon": -156.528, "zeta": -69.692, "epsilon_zeta": -86.835, "bb_type": "BI", "chi": -164.619, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.774, 0.790 ], "P_xyz": [ 1.152, 9.177, 1.085 ], "form": "A", "ssZp": 4.392, "Dp": 4.492, "splay_angle": 21.054, "splay_distance": 3.345, "splay_ratio": 0.183, "d22": 4.489, "d64": 4.155, "eta": 168.999, "theta": -146.142, "eta_prime": -176.723, "theta_prime": -146.450, "eta_base": -138.340, "theta_base": -122.042, "v0": 0.233, "v1": -21.834, "v2": 33.849, "v3": -34.659, "v4": 21.724, "amplitude": 35.638, "phase_angle": 18.232, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.946, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 255.835, 187.632, 125.871 ], "x_axis": [ 0.349, -0.416, 0.840 ], "y_axis": [ -0.583, -0.798, -0.154 ], "z_axis": [ 0.734, -0.436, -0.521 ], "quaternion": [ 0.086, 0.817, -0.306, 0.482 ] } }, { "index": 1578, "index_chain": 1578, "chain_name": "2", "nt_resnum": 1741, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1741", "linked_nts": [ "///2/1740", "///2/1742" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -67.741, "beta": -177.116, "gamma": 48.509, "delta": 82.902, "epsilon": -157.684, "zeta": -83.543, "epsilon_zeta": -74.141, "bb_type": "BI", "chi": -152.210, "glyco_bond": "anti", "C5prime_xyz": [ -1.282, 8.735, 0.096 ], "P_xyz": [ 1.273, 9.170, 0.514 ], "form": ".", "ssZp": 4.173, "Dp": 4.524, "splay_angle": 25.217, "splay_distance": 4.358, "splay_ratio": 0.225, "d22": 4.517, "d64": 5.154, "eta": 167.865, "theta": -126.987, "eta_prime": -179.891, "theta_prime": -133.478, "eta_base": -142.198, "theta_base": -115.836, "v0": 2.462, "v1": -23.380, "v2": 34.295, "v3": -33.827, "v4": 19.808, "amplitude": 35.464, "phase_angle": 14.752, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 258.987, 187.153, 124.858 ], "x_axis": [ -0.090, -0.756, 0.648 ], "y_axis": [ -0.601, -0.478, -0.641 ], "z_axis": [ 0.794, -0.447, -0.411 ], "quaternion": [ -0.072, 0.671, -0.506, 0.538 ] } }, { "index": 1579, "index_chain": 1579, "chain_name": "2", "nt_resnum": 1742, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1742", "linked_nts": [ "///2/1741", "///2/1743" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 149.724, "beta": -149.694, "gamma": -177.819, "delta": 81.866, "epsilon": -163.911, "zeta": -79.288, "epsilon_zeta": -84.623, "bb_type": "BI", "chi": -170.269, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.659, 1.138 ], "P_xyz": [ 0.182, 10.220, -0.306 ], "form": ".", "ssZp": 4.449, "Dp": 4.481, "splay_angle": 29.740, "splay_distance": 4.510, "splay_ratio": 0.257, "d22": null, "d64": null, "eta": 169.506, "theta": -146.259, "eta_prime": -172.227, "theta_prime": -146.256, "eta_base": -135.304, "theta_base": -88.767, "v0": 1.715, "v1": -23.321, "v2": 34.824, "v3": -34.846, "v4": 20.909, "amplitude": 36.226, "phase_angle": 15.993, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.761, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 262.819, 185.129, 125.319 ], "x_axis": [ -0.401, -0.855, 0.329 ], "y_axis": [ -0.444, -0.133, -0.886 ], "z_axis": [ 0.801, -0.501, -0.326 ], "quaternion": [ 0.187, -0.514, 0.631, -0.550 ] } }, { "index": 1580, "index_chain": 1580, "chain_name": "2", "nt_resnum": 1743, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1743", "linked_nts": [ "///2/1742", "///2/1744" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 168.705, "beta": -128.012, "gamma": 140.881, "delta": 82.202, "epsilon": -144.604, "zeta": -53.805, "epsilon_zeta": -90.799, "bb_type": "BI", "chi": 179.093, "glyco_bond": "anti", "C5prime_xyz": [ -1.571, 8.444, 1.727 ], "P_xyz": [ 0.922, 8.760, 0.987 ], "form": ".", "ssZp": 4.562, "Dp": 4.604, "splay_angle": 22.155, "splay_distance": 3.298, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 149.445, "theta": -96.484, "eta_prime": -177.481, "theta_prime": -99.227, "eta_base": -94.662, "theta_base": -75.154, "v0": 1.735, "v1": -23.085, "v2": 34.469, "v3": -34.438, "v4": 20.648, "amplitude": 35.844, "phase_angle": 15.924, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 263.820, 180.804, 124.522 ], "x_axis": [ -0.604, -0.583, -0.543 ], "y_axis": [ 0.105, 0.618, -0.779 ], "z_axis": [ 0.790, -0.528, -0.312 ], "quaternion": [ 0.419, -0.150, 0.796, -0.410 ] } }, { "index": 1581, "index_chain": 1581, "chain_name": "2", "nt_resnum": 1744, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1744", "linked_nts": [ "///2/1743", "///2/1745" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -125.894, "beta": -113.295, "gamma": 71.526, "delta": 146.273, "epsilon": -138.741, "zeta": 128.420, "epsilon_zeta": 92.839, "bb_type": "--", "chi": -69.619, "glyco_bond": "--", "C5prime_xyz": [ -2.998, 6.954, -3.008 ], "P_xyz": [ -0.583, 7.976, -3.117 ], "form": ".", "ssZp": 0.936, "Dp": 1.770, "splay_angle": 55.574, "splay_distance": 8.983, "splay_ratio": 0.473, "d22": null, "d64": null, "eta": 159.052, "theta": 123.864, "eta_prime": -165.221, "theta_prime": 103.362, "eta_base": -119.148, "theta_base": 133.024, "v0": -20.133, "v1": 34.080, "v2": -34.287, "v3": 23.525, "v4": -2.317, "amplitude": 35.505, "phase_angle": 164.951, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 264.404, 178.589, 122.149 ], "x_axis": [ -0.580, 0.274, -0.767 ], "y_axis": [ 0.790, 0.418, -0.448 ], "z_axis": [ 0.197, -0.866, -0.459 ], "quaternion": [ 0.308, 0.340, 0.784, -0.419 ] } }, { "index": 1582, "index_chain": 1582, "chain_name": "2", "nt_resnum": 1745, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1745", "linked_nts": [ "///2/1744", "///2/1746" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -91.512, "beta": 146.803, "gamma": 37.155, "delta": 82.606, "epsilon": -121.216, "zeta": -64.534, "epsilon_zeta": -56.682, "bb_type": "--", "chi": -176.398, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.446, 1.497 ], "P_xyz": [ 1.116, 8.324, 2.143 ], "form": ".", "ssZp": 4.652, "Dp": 4.719, "splay_angle": 39.096, "splay_distance": 6.054, "splay_ratio": 0.335, "d22": null, "d64": null, "eta": 155.474, "theta": -108.169, "eta_prime": 152.850, "theta_prime": -102.851, "eta_base": 173.325, "theta_base": -60.743, "v0": 3.131, "v1": -24.277, "v2": 35.012, "v3": -34.183, "v4": 19.601, "amplitude": 36.046, "phase_angle": 13.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.619, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 270.764, 176.080, 127.976 ], "x_axis": [ -0.687, -0.204, -0.697 ], "y_axis": [ 0.394, 0.702, -0.594 ], "z_axis": [ 0.610, -0.683, -0.402 ], "quaternion": [ 0.391, 0.057, 0.835, -0.382 ] } }, { "index": 1583, "index_chain": 1583, "chain_name": "2", "nt_resnum": 1746, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1746", "linked_nts": [ "///2/1745", "///2/1747" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -56.596, "beta": 162.334, "gamma": 58.430, "delta": 81.109, "epsilon": -150.790, "zeta": -79.405, "epsilon_zeta": -71.385, "bb_type": "BI", "chi": -163.430, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.715, 0.730 ], "P_xyz": [ 1.110, 9.109, 0.678 ], "form": "A", "ssZp": 4.475, "Dp": 4.596, "splay_angle": 25.374, "splay_distance": 3.986, "splay_ratio": 0.220, "d22": 4.607, "d64": 4.769, "eta": 162.847, "theta": -150.101, "eta_prime": -165.023, "theta_prime": -150.844, "eta_base": -94.762, "theta_base": -128.623, "v0": 1.382, "v1": -23.480, "v2": 35.393, "v3": -35.575, "v4": 21.565, "amplitude": 36.915, "phase_angle": 16.506, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.555, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 270.917, 173.568, 122.470 ], "x_axis": [ 0.021, 0.537, -0.843 ], "y_axis": [ 0.790, 0.509, 0.344 ], "z_axis": [ 0.613, -0.673, -0.414 ], "quaternion": [ 0.528, 0.481, 0.690, -0.119 ] } }, { "index": 1584, "index_chain": 1584, "chain_name": "2", "nt_resnum": 1747, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1747", "linked_nts": [ "///2/1746", "///2/1748" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -58.194, "beta": 167.028, "gamma": 56.304, "delta": 81.095, "epsilon": -148.173, "zeta": -42.876, "epsilon_zeta": -105.297, "bb_type": "BI", "chi": -163.180, "glyco_bond": "anti", "C5prime_xyz": [ -1.335, 8.751, 0.713 ], "P_xyz": [ 1.262, 9.095, 0.794 ], "form": ".", "ssZp": 4.480, "Dp": 4.626, "splay_angle": 24.443, "splay_distance": 4.620, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 173.160, "theta": -115.403, "eta_prime": -174.802, "theta_prime": -134.726, "eta_base": -138.864, "theta_base": -145.785, "v0": 1.998, "v1": -24.004, "v2": 35.677, "v3": -35.492, "v4": 21.134, "amplitude": 37.039, "phase_angle": 15.584, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.908, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 272.017, 170.579, 120.073 ], "x_axis": [ 0.407, 0.737, -0.540 ], "y_axis": [ 0.671, 0.160, 0.724 ], "z_axis": [ 0.620, -0.656, -0.429 ], "quaternion": [ 0.533, 0.647, 0.544, 0.031 ] } }, { "index": 1585, "index_chain": 1585, "chain_name": "2", "nt_resnum": 1748, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1748", "linked_nts": [ "///2/1747", "///2/1749" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -169.231, "beta": 132.990, "gamma": 161.789, "delta": 82.039, "epsilon": -145.429, "zeta": -69.716, "epsilon_zeta": -75.713, "bb_type": "BI", "chi": -166.675, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.740, 0.915 ], "P_xyz": [ -1.127, 10.825, -0.618 ], "form": ".", "ssZp": 4.475, "Dp": 4.574, "splay_angle": 27.941, "splay_distance": 4.357, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 159.691, "theta": 176.227, "eta_prime": 168.094, "theta_prime": -168.945, "eta_base": 173.276, "theta_base": -119.895, "v0": 0.142, "v1": -21.768, "v2": 33.854, "v3": -34.755, "v4": 21.835, "amplitude": 35.680, "phase_angle": 18.410, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.389, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 271.594, 167.740, 116.452 ], "x_axis": [ 0.293, 0.924, -0.246 ], "y_axis": [ 0.696, -0.029, 0.718 ], "z_axis": [ 0.656, -0.382, -0.651 ], "quaternion": [ 0.391, 0.702, 0.576, 0.146 ] } }, { "index": 1586, "index_chain": 1586, "chain_name": "2", "nt_resnum": 1749, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1749", "linked_nts": [ "///2/1748", "///2/1750" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -63.012, "beta": 176.597, "gamma": 54.117, "delta": 82.914, "epsilon": -171.719, "zeta": -81.034, "epsilon_zeta": -90.685, "bb_type": "BI", "chi": -147.040, "glyco_bond": "anti", "C5prime_xyz": [ -1.127, 8.729, -0.221 ], "P_xyz": [ 1.488, 8.942, -0.343 ], "form": ".", "ssZp": 4.064, "Dp": 4.452, "splay_angle": 25.501, "splay_distance": 4.233, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 168.639, "theta": -129.897, "eta_prime": -170.608, "theta_prime": -134.819, "eta_base": -112.823, "theta_base": -113.815, "v0": 4.487, "v1": -25.400, "v2": 35.529, "v3": -33.926, "v4": 18.605, "amplitude": 36.282, "phase_angle": 11.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.984, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 274.620, 168.318, 113.371 ], "x_axis": [ 0.751, 0.579, 0.318 ], "y_axis": [ 0.319, -0.740, 0.592 ], "z_axis": [ 0.578, -0.343, -0.740 ], "quaternion": [ 0.260, 0.899, 0.250, 0.249 ] } }, { "index": 1587, "index_chain": 1587, "chain_name": "2", "nt_resnum": 1750, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1750", "linked_nts": [ "///2/1749", "///2/1751" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": 157.141, "beta": -137.608, "gamma": 174.749, "delta": 81.608, "epsilon": -103.314, "zeta": -97.858, "epsilon_zeta": -5.456, "bb_type": "--", "chi": -160.598, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.767, 0.562 ], "P_xyz": [ 0.204, 9.716, -1.364 ], "form": ".", "ssZp": 4.103, "Dp": 4.705, "splay_angle": 32.647, "splay_distance": 5.215, "splay_ratio": 0.283, "d22": 5.072, "d64": 3.941, "eta": -176.209, "theta": -135.096, "eta_prime": -161.138, "theta_prime": -143.251, "eta_base": -124.464, "theta_base": -129.362, "v0": 1.945, "v1": -23.745, "v2": 35.299, "v3": -35.155, "v4": 20.946, "amplitude": 36.656, "phase_angle": 15.638, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.603, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 277.746, 168.845, 110.566 ], "x_axis": [ 0.921, 0.097, 0.378 ], "y_axis": [ 0.007, -0.973, 0.230 ], "z_axis": [ 0.390, -0.209, -0.897 ], "quaternion": [ 0.113, 0.973, 0.027, 0.197 ] } }, { "index": 1588, "index_chain": 1588, "chain_name": "2", "nt_resnum": 1751, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1751", "linked_nts": [ "///2/1750", "///2/1752" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -125.430, "beta": -160.587, "gamma": 61.129, "delta": 81.643, "epsilon": -159.868, "zeta": -82.492, "epsilon_zeta": -77.376, "bb_type": "BI", "chi": -173.528, "glyco_bond": "anti", "C5prime_xyz": [ -1.204, 8.511, 1.331 ], "P_xyz": [ 1.274, 8.530, 2.190 ], "form": ".", "ssZp": 4.608, "Dp": 4.602, "splay_angle": 35.574, "splay_distance": 5.559, "splay_ratio": 0.311, "d22": 5.767, "d64": 6.494, "eta": 116.645, "theta": -163.103, "eta_prime": 135.822, "theta_prime": -159.613, "eta_base": 166.536, "theta_base": -157.483, "v0": 5.300, "v1": -26.991, "v2": 37.258, "v3": -35.186, "v4": 18.836, "amplitude": 37.921, "phase_angle": 10.731, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 281.217, 167.583, 106.885 ], "x_axis": [ -0.388, 0.151, 0.909 ], "y_axis": [ -0.598, -0.792, -0.123 ], "z_axis": [ 0.701, -0.592, 0.397 ], "quaternion": [ 0.233, 0.502, -0.223, 0.803 ] } }, { "index": 1589, "index_chain": 1589, "chain_name": "2", "nt_resnum": 1752, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1752", "linked_nts": [ "///2/1751", "///2/1753" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -62.765, "beta": -174.300, "gamma": 58.038, "delta": 82.960, "epsilon": -152.524, "zeta": -63.353, "epsilon_zeta": -89.172, "bb_type": "BI", "chi": -170.717, "glyco_bond": "anti", "C5prime_xyz": [ -1.567, 8.747, 1.118 ], "P_xyz": [ 0.829, 9.216, 2.080 ], "form": ".", "ssZp": 4.377, "Dp": 4.443, "splay_angle": 27.279, "splay_distance": 4.324, "splay_ratio": 0.236, "d22": 4.972, "d64": 4.737, "eta": -174.403, "theta": -137.794, "eta_prime": -172.936, "theta_prime": -132.904, "eta_base": -170.796, "theta_base": -98.392, "v0": -2.214, "v1": -19.126, "v2": 31.855, "v3": -34.040, "v4": 22.881, "amplitude": 34.405, "phase_angle": 22.199, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.808, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 286.724, 167.622, 106.127 ], "x_axis": [ -0.608, 0.133, 0.783 ], "y_axis": [ -0.577, -0.752, -0.320 ], "z_axis": [ 0.546, -0.646, 0.534 ], "quaternion": [ 0.209, 0.391, -0.284, 0.850 ] } }, { "index": 1590, "index_chain": 1590, "chain_name": "2", "nt_resnum": 1753, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1753", "linked_nts": [ "///2/1752", "///2/1754" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -80.239, "beta": -166.220, "gamma": 58.291, "delta": 88.256, "epsilon": -75.578, "zeta": -159.579, "epsilon_zeta": 84.001, "bb_type": "BII", "chi": -142.294, "glyco_bond": "anti", "C5prime_xyz": [ -1.395, 8.757, -0.456 ], "P_xyz": [ 1.178, 9.224, -0.178 ], "form": ".", "ssZp": 2.634, "Dp": 4.298, "splay_angle": 44.855, "splay_distance": 7.327, "splay_ratio": 0.399, "d22": null, "d64": null, "eta": -164.028, "theta": -161.601, "eta_prime": -154.156, "theta_prime": -144.134, "eta_base": -118.247, "theta_base": -111.202, "v0": 1.071, "v1": -20.065, "v2": 30.288, "v3": -30.515, "v4": 18.628, "amplitude": 31.626, "phase_angle": 16.722, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.625, "filter_rmsd": 0.060, "frame": { "rmsd": 0.011, "origin": [ 288.529, 165.828, 109.623 ], "x_axis": [ -0.854, -0.388, 0.346 ], "y_axis": [ 0.016, -0.685, -0.728 ], "z_axis": [ 0.520, -0.616, 0.592 ], "quaternion": [ -0.114, 0.245, -0.380, 0.885 ] } }, { "index": 1591, "index_chain": 1591, "chain_name": "2", "nt_resnum": 1754, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1754", "linked_nts": [ "///2/1753", "///2/1755" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -48.809, "beta": 118.878, "gamma": 50.269, "delta": 85.891, "epsilon": -149.256, "zeta": -88.036, "epsilon_zeta": -61.219, "bb_type": "BI", "chi": -148.976, "glyco_bond": "anti", "C5prime_xyz": [ -0.945, 8.725, -0.042 ], "P_xyz": [ 1.465, 7.859, -0.621 ], "form": ".", "ssZp": 4.028, "Dp": 4.543, "splay_angle": 26.282, "splay_distance": 4.188, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 171.609, "theta": -138.718, "eta_prime": -176.250, "theta_prime": -146.572, "eta_base": -151.725, "theta_base": -131.324, "v0": 4.226, "v1": -23.450, "v2": 32.684, "v3": -31.195, "v4": 17.087, "amplitude": 33.362, "phase_angle": 11.577, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 291.775, 159.447, 111.188 ], "x_axis": [ -0.934, -0.274, -0.229 ], "y_axis": [ 0.270, -0.123, -0.955 ], "z_axis": [ 0.233, -0.954, 0.189 ], "quaternion": [ -0.182, 0.001, -0.637, 0.749 ] } }, { "index": 1592, "index_chain": 1592, "chain_name": "2", "nt_resnum": 1755, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1755", "linked_nts": [ "///2/1754", "///2/1756" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -46.198, "beta": 161.476, "gamma": 47.456, "delta": 85.672, "epsilon": -79.942, "zeta": -31.255, "epsilon_zeta": -48.688, "bb_type": "--", "chi": -147.909, "glyco_bond": "anti", "C5prime_xyz": [ -1.030, 8.702, -0.155 ], "P_xyz": [ 1.595, 8.646, -0.269 ], "form": ".", "ssZp": 3.114, "Dp": 4.576, "splay_angle": 31.330, "splay_distance": 5.716, "splay_ratio": 0.273, "d22": 5.015, "d64": 6.060, "eta": -164.188, "theta": -77.460, "eta_prime": -157.833, "theta_prime": -91.791, "eta_base": -133.899, "theta_base": -90.593, "v0": 4.528, "v1": -24.134, "v2": 33.489, "v3": -31.810, "v4": 17.251, "amplitude": 34.139, "phase_angle": 11.195, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.552, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 292.494, 155.433, 112.140 ], "x_axis": [ -0.698, -0.245, -0.673 ], "y_axis": [ 0.694, 0.002, -0.720 ], "z_axis": [ 0.178, -0.969, 0.169 ], "quaternion": [ -0.344, -0.181, -0.618, 0.683 ] } }, { "index": 1593, "index_chain": 1593, "chain_name": "2", "nt_resnum": 1756, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1756", "linked_nts": [ "///2/1755", "///2/1757" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -97.142, "beta": 65.579, "gamma": -169.041, "delta": 79.481, "epsilon": -107.504, "zeta": -41.893, "epsilon_zeta": -65.611, "bb_type": "--", "chi": -150.151, "glyco_bond": "anti", "C5prime_xyz": [ -1.440, 8.844, -0.090 ], "P_xyz": [ -3.146, 10.344, -1.404 ], "form": ".", "ssZp": 3.674, "Dp": 4.723, "splay_angle": 29.279, "splay_distance": 4.853, "splay_ratio": 0.253, "d22": null, "d64": null, "eta": -178.131, "theta": -156.846, "eta_prime": -169.448, "theta_prime": -178.975, "eta_base": -153.638, "theta_base": 152.160, "v0": 0.664, "v1": -23.561, "v2": 36.225, "v3": -36.878, "v4": 22.859, "amplitude": 38.019, "phase_angle": 17.668, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.001, "origin": [ 290.856, 150.235, 110.416 ], "x_axis": [ -0.514, -0.192, -0.836 ], "y_axis": [ 0.842, 0.070, -0.534 ], "z_axis": [ 0.161, -0.979, 0.126 ], "quaternion": [ -0.413, -0.269, -0.604, 0.627 ] } }, { "index": 1594, "index_chain": 1594, "chain_name": "2", "nt_resnum": 1757, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1757", "linked_nts": [ "///2/1756", "///2/1758" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,internal-loop", "alpha": -170.824, "beta": 114.959, "gamma": 107.917, "delta": 82.243, "epsilon": -161.197, "zeta": -69.057, "epsilon_zeta": -92.139, "bb_type": "BI", "chi": -173.200, "glyco_bond": "anti", "C5prime_xyz": [ -1.578, 8.637, 1.287 ], "P_xyz": [ 0.132, 9.502, -0.501 ], "form": ".", "ssZp": 4.443, "Dp": 4.479, "splay_angle": 43.006, "splay_distance": 6.172, "splay_ratio": 0.368, "d22": null, "d64": null, "eta": 59.917, "theta": -162.832, "eta_prime": 108.523, "theta_prime": -155.895, "eta_base": 100.933, "theta_base": -130.200, "v0": 0.545, "v1": -22.221, "v2": 34.191, "v3": -34.831, "v4": 21.638, "amplitude": 35.901, "phase_angle": 17.759, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 291.723, 145.991, 112.605 ], "x_axis": [ -0.142, 0.987, 0.071 ], "y_axis": [ 0.826, 0.158, -0.541 ], "z_axis": [ -0.545, -0.019, -0.838 ], "quaternion": [ -0.211, 0.620, 0.731, -0.191 ] } }, { "index": 1595, "index_chain": 1595, "chain_name": "2", "nt_resnum": 1758, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1758", "linked_nts": [ "///2/1757", "///2/1759" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop", "alpha": -92.672, "beta": -111.985, "gamma": 62.248, "delta": 85.619, "epsilon": 165.185, "zeta": -87.748, "epsilon_zeta": -107.067, "bb_type": "BI", "chi": -103.002, "glyco_bond": "anti", "C5prime_xyz": [ -1.600, 7.731, -2.524 ], "P_xyz": [ 1.014, 7.777, -2.242 ], "form": ".", "ssZp": 1.940, "Dp": 4.193, "splay_angle": 27.896, "splay_distance": 4.620, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": -155.623, "theta": -143.618, "eta_prime": -159.046, "theta_prime": -147.436, "eta_base": -144.083, "theta_base": -126.928, "v0": 8.121, "v1": -26.872, "v2": 34.433, "v3": -30.730, "v4": 14.345, "amplitude": 34.589, "phase_angle": 5.435, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.356, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 287.977, 146.234, 107.706 ], "x_axis": [ 0.426, 0.859, -0.285 ], "y_axis": [ 0.685, -0.512, -0.518 ], "z_axis": [ -0.591, 0.026, -0.807 ], "quaternion": [ -0.164, 0.828, 0.466, -0.264 ] } }, { "index": 1596, "index_chain": 1596, "chain_name": "2", "nt_resnum": 1759, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1759", "linked_nts": [ "///2/1758", "///2/1760" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 172.402, "beta": -128.558, "gamma": 148.370, "delta": 83.186, "epsilon": -90.105, "zeta": -122.568, "epsilon_zeta": 32.463, "bb_type": "--", "chi": -136.182, "glyco_bond": "anti", "C5prime_xyz": [ -1.299, 8.659, -0.891 ], "P_xyz": [ 0.314, 8.138, -2.891 ], "form": ".", "ssZp": 2.541, "Dp": 4.674, "splay_angle": 47.855, "splay_distance": 7.651, "splay_ratio": 0.414, "d22": null, "d64": null, "eta": -176.060, "theta": -146.281, "eta_prime": -168.802, "theta_prime": -141.560, "eta_base": -144.509, "theta_base": -112.651, "v0": 3.575, "v1": -24.544, "v2": 35.012, "v3": -33.939, "v4": 19.203, "amplitude": 35.944, "phase_angle": 13.073, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 287.037, 146.308, 103.184 ], "x_axis": [ 0.675, 0.606, -0.421 ], "y_axis": [ 0.434, -0.787, -0.438 ], "z_axis": [ -0.597, 0.113, -0.794 ], "quaternion": [ -0.153, 0.902, 0.288, -0.282 ] } }, { "index": 1597, "index_chain": 1597, "chain_name": "2", "nt_resnum": 1760, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1760", "linked_nts": [ "///2/1759", "///2/1761" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -45.352, "beta": 125.086, "gamma": 58.809, "delta": 80.518, "epsilon": -111.639, "zeta": -43.199, "epsilon_zeta": -68.440, "bb_type": "--", "chi": -176.023, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.446, 1.448 ], "P_xyz": [ 1.196, 8.272, 0.692 ], "form": ".", "ssZp": 4.729, "Dp": 4.836, "splay_angle": 44.660, "splay_distance": 7.219, "splay_ratio": 0.385, "d22": null, "d64": null, "eta": 170.385, "theta": -77.188, "eta_prime": -173.790, "theta_prime": -85.987, "eta_base": -138.943, "theta_base": -57.739, "v0": 6.105, "v1": -28.224, "v2": 38.481, "v3": -35.985, "v4": 18.830, "amplitude": 39.053, "phase_angle": 9.814, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.283, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 288.416, 146.179, 95.659 ], "x_axis": [ 0.974, -0.074, 0.215 ], "y_axis": [ -0.135, -0.949, 0.286 ], "z_axis": [ 0.183, -0.308, -0.934 ], "quaternion": [ 0.151, 0.982, -0.053, 0.101 ] } }, { "index": 1598, "index_chain": 1598, "chain_name": "2", "nt_resnum": 1761, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1761", "linked_nts": [ "///2/1760", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -80.103, "beta": -155.192, "gamma": 35.321, "delta": 79.262, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -151.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.611, 8.830, 0.007 ], "P_xyz": [ 0.535, 9.944, 1.023 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -0.727, "v1": -22.086, "v2": 35.193, "v3": -36.616, "v4": 23.547, "amplitude": 37.383, "phase_angle": 19.710, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.080, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 294.587, 142.464, 95.169 ], "x_axis": [ -0.063, -0.525, 0.848 ], "y_axis": [ -0.921, -0.297, -0.252 ], "z_axis": [ 0.384, -0.797, -0.465 ], "quaternion": [ 0.209, 0.652, -0.555, 0.473 ] } }, { "index": 1599, "index_chain": 1599, "chain_name": "2", "nt_resnum": 1771, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1771", "linked_nts": [ null, "///2/1772" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,helix-end,ss-non-loop", "alpha": null, "beta": -156.794, "gamma": 52.771, "delta": 82.105, "epsilon": -90.682, "zeta": -146.722, "epsilon_zeta": 56.039, "bb_type": "--", "chi": -173.293, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.575, 1.308 ], "P_xyz": [ 0.884, 8.761, 2.573 ], "form": ".", "ssZp": 4.410, "Dp": 4.683, "splay_angle": 44.282, "splay_distance": 6.772, "splay_ratio": 0.380, "d22": null, "d64": null, "eta": null, "theta": -166.010, "eta_prime": null, "theta_prime": -146.811, "eta_base": null, "theta_base": -120.263, "v0": 2.989, "v1": -24.578, "v2": 35.600, "v3": -34.868, "v4": 20.116, "amplitude": 36.698, "phase_angle": 14.049, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 291.116, 145.312, 90.605 ], "x_axis": [ 0.876, -0.395, 0.277 ], "y_axis": [ 0.409, 0.912, 0.006 ], "z_axis": [ -0.255, 0.108, 0.961 ], "quaternion": [ 0.968, -0.026, -0.137, -0.208 ] } }, { "index": 1600, "index_chain": 1600, "chain_name": "2", "nt_resnum": 1772, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1772", "linked_nts": [ "///2/1771", "///2/1773" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,isolated-canonical,helix-end,internal-loop", "alpha": -46.329, "beta": 124.815, "gamma": 60.425, "delta": 81.924, "epsilon": -168.333, "zeta": -88.997, "epsilon_zeta": -79.336, "bb_type": "BI", "chi": -165.938, "glyco_bond": "anti", "C5prime_xyz": [ -1.251, 8.673, 0.879 ], "P_xyz": [ 1.218, 8.394, 0.044 ], "form": ".", "ssZp": 4.471, "Dp": 4.499, "splay_angle": 43.748, "splay_distance": 7.339, "splay_ratio": 0.383, "d22": 7.042, "d64": 8.365, "eta": 173.826, "theta": -144.581, "eta_prime": -172.750, "theta_prime": -164.206, "eta_base": -150.004, "theta_base": -179.933, "v0": 3.649, "v1": -25.222, "v2": 36.024, "v3": -34.897, "v4": 19.712, "amplitude": 36.982, "phase_angle": 13.070, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.010, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 288.387, 146.226, 96.735 ], "x_axis": [ 0.986, -0.062, 0.158 ], "y_axis": [ 0.114, 0.931, -0.346 ], "z_axis": [ -0.125, 0.359, 0.925 ], "quaternion": [ 0.980, -0.180, -0.072, -0.045 ] } }, { "index": 1601, "index_chain": 1601, "chain_name": "2", "nt_resnum": 1773, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1773", "linked_nts": [ "///2/1772", "///2/1774" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -179.488, "beta": 178.131, "gamma": 173.452, "delta": 81.669, "epsilon": -132.185, "zeta": -34.729, "epsilon_zeta": -97.455, "bb_type": "--", "chi": -174.328, "glyco_bond": "anti", "C5prime_xyz": [ -1.193, 8.508, 1.380 ], "P_xyz": [ 0.202, 10.494, 0.386 ], "form": ".", "ssZp": 4.714, "Dp": 4.756, "splay_angle": 54.274, "splay_distance": 8.173, "splay_ratio": 0.457, "d22": 4.296, "d64": 5.462, "eta": -179.105, "theta": -126.288, "eta_prime": 175.863, "theta_prime": -115.326, "eta_base": 171.286, "theta_base": -70.948, "v0": 4.951, "v1": -26.607, "v2": 36.961, "v3": -35.110, "v4": 19.033, "amplitude": 37.683, "phase_angle": 11.229, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.322, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 282.856, 144.488, 101.235 ], "x_axis": [ 0.967, -0.161, 0.195 ], "y_axis": [ 0.221, 0.914, -0.340 ], "z_axis": [ -0.124, 0.372, 0.920 ], "quaternion": [ 0.975, -0.182, -0.082, -0.098 ] } }, { "index": 1602, "index_chain": 1602, "chain_name": "2", "nt_resnum": 1774, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1774", "linked_nts": [ "///2/1773", "///2/1775" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -83.374, "beta": -173.170, "gamma": 67.034, "delta": 81.778, "epsilon": -161.582, "zeta": -96.438, "epsilon_zeta": -65.145, "bb_type": "BI", "chi": -159.666, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.759, 0.510 ], "P_xyz": [ 1.348, 9.083, 0.619 ], "form": "A", "ssZp": 4.411, "Dp": 4.541, "splay_angle": 20.745, "splay_distance": 3.259, "splay_ratio": 0.181, "d22": 4.934, "d64": 4.688, "eta": 162.482, "theta": -135.627, "eta_prime": -157.852, "theta_prime": -138.295, "eta_base": -86.750, "theta_base": -109.922, "v0": 2.733, "v1": -24.360, "v2": 35.535, "v3": -34.947, "v4": 20.329, "amplitude": 36.696, "phase_angle": 14.451, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.147, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 288.764, 148.676, 105.025 ], "x_axis": [ 0.379, 0.860, -0.342 ], "y_axis": [ -0.917, 0.300, -0.264 ], "z_axis": [ -0.124, 0.414, 0.902 ], "quaternion": [ 0.803, -0.211, 0.068, 0.553 ] } }, { "index": 1603, "index_chain": 1603, "chain_name": "2", "nt_resnum": 1775, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1775", "linked_nts": [ "///2/1774", "///2/1776" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop", "alpha": 168.340, "beta": -132.275, "gamma": 156.055, "delta": 82.489, "epsilon": -111.164, "zeta": -90.929, "epsilon_zeta": -20.235, "bb_type": "--", "chi": -154.267, "glyco_bond": "anti", "C5prime_xyz": [ -1.353, 8.726, 0.185 ], "P_xyz": [ 0.432, 8.985, -1.721 ], "form": ".", "ssZp": 3.960, "Dp": 4.738, "splay_angle": 20.423, "splay_distance": 3.320, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 170.167, "theta": -114.766, "eta_prime": -174.437, "theta_prime": -139.220, "eta_base": -132.878, "theta_base": -171.967, "v0": 3.058, "v1": -24.433, "v2": 35.263, "v3": -34.500, "v4": 19.864, "amplitude": 36.328, "phase_angle": 13.908, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.079, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 289.676, 150.721, 107.393 ], "x_axis": [ -0.138, 0.945, -0.296 ], "y_axis": [ -0.961, -0.054, 0.273 ], "z_axis": [ 0.242, 0.321, 0.916 ], "quaternion": [ 0.656, -0.019, 0.205, 0.726 ] } }, { "index": 1604, "index_chain": 1604, "chain_name": "2", "nt_resnum": 1776, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1776", "linked_nts": [ "///2/1775", "///2/1777" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -153.302, "beta": -168.829, "gamma": 81.462, "delta": 84.267, "epsilon": 166.524, "zeta": -87.851, "epsilon_zeta": -105.625, "bb_type": "BI", "chi": -147.961, "glyco_bond": "anti", "C5prime_xyz": [ -1.088, 8.732, -0.147 ], "P_xyz": [ 1.504, 8.822, -0.556 ], "form": ".", "ssZp": 3.946, "Dp": 4.168, "splay_angle": 31.454, "splay_distance": 4.822, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": 96.457, "theta": -174.298, "eta_prime": 130.411, "theta_prime": -177.069, "eta_base": 126.357, "theta_base": -176.291, "v0": 4.402, "v1": -24.360, "v2": 33.898, "v3": -32.332, "v4": 17.676, "amplitude": 34.594, "phase_angle": 11.510, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 291.042, 150.809, 110.417 ], "x_axis": [ -0.514, -0.207, -0.833 ], "y_axis": [ -0.842, -0.064, 0.535 ], "z_axis": [ -0.164, 0.976, -0.141 ], "quaternion": [ 0.265, -0.416, 0.631, 0.599 ] } }, { "index": 1605, "index_chain": 1605, "chain_name": "2", "nt_resnum": 1777, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1777", "linked_nts": [ "///2/1776", "///2/1778" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -130.591, "beta": -149.722, "gamma": 98.386, "delta": 86.821, "epsilon": -118.268, "zeta": -109.973, "epsilon_zeta": -8.296, "bb_type": "--", "chi": -155.399, "glyco_bond": "anti", "C5prime_xyz": [ -0.852, 8.615, 0.295 ], "P_xyz": [ 1.718, 8.248, -0.158 ], "form": ".", "ssZp": 4.120, "Dp": 4.766, "splay_angle": 38.782, "splay_distance": 6.056, "splay_ratio": 0.334, "d22": null, "d64": null, "eta": 177.861, "theta": -148.398, "eta_prime": 172.530, "theta_prime": -142.069, "eta_base": 173.875, "theta_base": -126.678, "v0": 7.490, "v1": -26.549, "v2": 34.421, "v3": -31.077, "v4": 14.957, "amplitude": 34.641, "phase_angle": 6.460, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 292.866, 154.897, 112.207 ], "x_axis": [ -0.673, -0.265, -0.690 ], "y_axis": [ -0.727, 0.070, 0.683 ], "z_axis": [ -0.133, 0.962, -0.240 ], "quaternion": [ 0.198, -0.352, 0.704, 0.584 ] } }, { "index": 1606, "index_chain": 1606, "chain_name": "2", "nt_resnum": 1778, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1778", "linked_nts": [ "///2/1777", "///2/1779" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -57.429, "beta": 150.247, "gamma": 74.270, "delta": 84.808, "epsilon": -155.683, "zeta": -96.915, "epsilon_zeta": -58.768, "bb_type": "BI", "chi": -139.354, "glyco_bond": "anti", "C5prime_xyz": [ -1.212, 8.685, -0.715 ], "P_xyz": [ 1.014, 8.427, -2.099 ], "form": ".", "ssZp": 3.719, "Dp": 4.559, "splay_angle": 25.071, "splay_distance": 4.044, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": -177.450, "theta": -139.099, "eta_prime": -164.353, "theta_prime": -138.513, "eta_base": -144.465, "theta_base": -121.676, "v0": 3.554, "v1": -23.871, "v2": 33.947, "v3": -32.827, "v4": 18.498, "amplitude": 34.824, "phase_angle": 12.886, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.575, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 291.593, 160.539, 110.409 ], "x_axis": [ -0.921, -0.199, -0.334 ], "y_axis": [ -0.371, 0.197, 0.907 ], "z_axis": [ -0.115, 0.960, -0.256 ], "quaternion": [ 0.071, -0.185, 0.771, 0.606 ] } }, { "index": 1607, "index_chain": 1607, "chain_name": "2", "nt_resnum": 1779, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1779", "linked_nts": [ "///2/1778", "///2/1780" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,bulge", "alpha": -147.441, "beta": -133.086, "gamma": 114.201, "delta": 85.501, "epsilon": -169.338, "zeta": -75.088, "epsilon_zeta": -94.249, "bb_type": "BI", "chi": -114.947, "glyco_bond": "anti", "C5prime_xyz": [ -1.575, 8.178, -1.978 ], "P_xyz": [ 0.641, 7.341, -3.119 ], "form": "B", "ssZp": 2.536, "Dp": 4.413, "splay_angle": 18.293, "splay_distance": 3.099, "splay_ratio": 0.165, "d22": null, "d64": null, "eta": 162.464, "theta": -148.232, "eta_prime": 176.895, "theta_prime": -161.157, "eta_base": -156.395, "theta_base": -160.035, "v0": 5.520, "v1": -24.958, "v2": 33.788, "v3": -31.502, "v4": 16.498, "amplitude": 34.264, "phase_angle": 9.564, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 289.529, 164.005, 110.126 ], "x_axis": [ -0.841, -0.470, 0.267 ], "y_axis": [ -0.091, 0.610, 0.787 ], "z_axis": [ -0.533, 0.638, -0.556 ], "quaternion": [ -0.231, -0.162, 0.867, 0.411 ] } }, { "index": 1608, "index_chain": 1608, "chain_name": "2", "nt_resnum": 1780, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1780", "linked_nts": [ "///2/1779", "///2/1781" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -66.304, "beta": 166.716, "gamma": 59.667, "delta": 83.981, "epsilon": -83.240, "zeta": -29.275, "epsilon_zeta": -53.965, "bb_type": "--", "chi": -116.482, "glyco_bond": "anti", "C5prime_xyz": [ -1.881, 8.353, -1.888 ], "P_xyz": [ 0.483, 8.399, -3.049 ], "form": ".", "ssZp": 1.079, "Dp": 4.480, "splay_angle": 58.786, "splay_distance": 10.481, "splay_ratio": 0.491, "d22": null, "d64": null, "eta": -169.817, "theta": -75.403, "eta_prime": -166.188, "theta_prime": -86.084, "eta_base": -157.207, "theta_base": -78.879, "v0": 0.749, "v1": -21.140, "v2": 32.424, "v3": -32.838, "v4": 20.236, "amplitude": 33.971, "phase_angle": 17.354, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.675, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 288.142, 166.395, 108.724 ], "x_axis": [ -0.816, -0.335, 0.471 ], "y_axis": [ -0.055, 0.856, 0.514 ], "z_axis": [ -0.575, 0.394, -0.717 ], "quaternion": [ -0.284, -0.106, 0.920, 0.247 ] } }, { "index": 1609, "index_chain": 1609, "chain_name": "2", "nt_resnum": 1781, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1781", "linked_nts": [ "///2/1780", "///2/1782" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -89.937, "beta": 86.498, "gamma": -126.678, "delta": 78.108, "epsilon": -159.487, "zeta": -78.413, "epsilon_zeta": -81.074, "bb_type": "BI", "chi": -85.633, "glyco_bond": "anti", "C5prime_xyz": [ -2.861, 7.176, -3.083 ], "P_xyz": [ -4.430, 9.197, -3.669 ], "form": ".", "ssZp": 0.144, "Dp": 4.503, "splay_angle": 42.761, "splay_distance": 7.471, "splay_ratio": 0.365, "d22": null, "d64": null, "eta": -116.541, "theta": 128.371, "eta_prime": -103.967, "theta_prime": 137.265, "eta_base": -87.905, "theta_base": 121.332, "v0": -2.202, "v1": -21.161, "v2": 34.985, "v3": -37.363, "v4": 24.991, "amplitude": 37.719, "phase_angle": 21.951, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 279.563, 170.383, 113.235 ], "x_axis": [ -0.843, 0.527, -0.106 ], "y_axis": [ 0.504, 0.704, -0.500 ], "z_axis": [ -0.189, -0.475, -0.859 ], "quaternion": [ -0.022, 0.279, 0.923, -0.264 ] } }, { "index": 1610, "index_chain": 1610, "chain_name": "2", "nt_resnum": 1782, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1782", "linked_nts": [ "///2/1781", "///2/1783" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -60.152, "beta": -176.064, "gamma": -9.624, "delta": 79.445, "epsilon": -145.081, "zeta": 60.915, "epsilon_zeta": 154.004, "bb_type": "--", "chi": -149.980, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.820, -0.132 ], "P_xyz": [ 0.544, 10.385, 0.877 ], "form": ".", "ssZp": 4.092, "Dp": 4.697, "splay_angle": 80.192, "splay_distance": 13.013, "splay_ratio": 0.647, "d22": null, "d64": null, "eta": 121.639, "theta": -39.036, "eta_prime": 116.099, "theta_prime": -51.121, "eta_base": 108.196, "theta_base": -38.361, "v0": 1.927, "v1": -24.736, "v2": 36.872, "v3": -36.769, "v4": 21.971, "amplitude": 38.317, "phase_angle": 15.784, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 281.433, 167.208, 106.735 ], "x_axis": [ -0.177, -0.024, 0.984 ], "y_axis": [ 0.488, 0.866, 0.109 ], "z_axis": [ -0.855, 0.500, -0.141 ], "quaternion": [ 0.622, -0.157, -0.739, -0.206 ] } }, { "index": 1611, "index_chain": 1611, "chain_name": "2", "nt_resnum": 1783, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1783", "linked_nts": [ "///2/1782", "///2/1784" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,bulge", "alpha": 159.143, "beta": 112.509, "gamma": -164.833, "delta": 144.940, "epsilon": -130.554, "zeta": 122.579, "epsilon_zeta": 106.867, "bb_type": "--", "chi": -114.181, "glyco_bond": "anti", "C5prime_xyz": [ -2.185, 8.497, -1.521 ], "P_xyz": [ -2.833, 9.867, -3.667 ], "form": ".", "ssZp": 1.663, "Dp": 1.640, "splay_angle": 72.473, "splay_distance": 11.694, "splay_ratio": 0.591, "d22": null, "d64": null, "eta": -155.363, "theta": 39.680, "eta_prime": -128.403, "theta_prime": 56.542, "eta_base": -98.906, "theta_base": 80.549, "v0": -23.954, "v1": 37.037, "v2": -35.262, "v3": 22.325, "v4": 0.832, "amplitude": 37.524, "phase_angle": 160.001, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 283.624, 176.229, 115.854 ], "x_axis": [ 0.823, 0.546, 0.153 ], "y_axis": [ -0.115, 0.425, -0.898 ], "z_axis": [ -0.556, 0.722, 0.412 ], "quaternion": [ 0.816, -0.497, -0.217, 0.203 ] } }, { "index": 1612, "index_chain": 1612, "chain_name": "2", "nt_resnum": 1784, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1784", "linked_nts": [ "///2/1783", "///2/1785" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -70.763, "beta": 172.563, "gamma": 3.632, "delta": 80.798, "epsilon": -143.105, "zeta": -78.225, "epsilon_zeta": -64.880, "bb_type": "BI", "chi": -174.405, "glyco_bond": "anti", "C5prime_xyz": [ -1.567, 8.600, 1.357 ], "P_xyz": [ 0.228, 9.266, 3.147 ], "form": "A", "ssZp": 4.616, "Dp": 4.641, "splay_angle": 25.230, "splay_distance": 3.967, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 157.486, "theta": -156.058, "eta_prime": 147.570, "theta_prime": -145.787, "eta_base": 150.812, "theta_base": -108.876, "v0": 1.217, "v1": -23.294, "v2": 35.262, "v3": -35.561, "v4": 21.643, "amplitude": 36.827, "phase_angle": 16.765, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 277.716, 168.059, 109.930 ], "x_axis": [ 0.629, 0.181, 0.756 ], "y_axis": [ 0.172, 0.916, -0.362 ], "z_axis": [ -0.758, 0.358, 0.545 ], "quaternion": [ 0.879, -0.205, -0.431, 0.002 ] } }, { "index": 1613, "index_chain": 1613, "chain_name": "2", "nt_resnum": 1785, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1785", "linked_nts": [ "///2/1784", "///2/1786" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -57.512, "beta": 171.896, "gamma": 52.262, "delta": 81.510, "epsilon": -141.260, "zeta": -71.087, "epsilon_zeta": -70.173, "bb_type": "BI", "chi": -162.061, "glyco_bond": "anti", "C5prime_xyz": [ -1.306, 8.771, 0.662 ], "P_xyz": [ 1.269, 9.139, 0.993 ], "form": ".", "ssZp": 4.429, "Dp": 4.639, "splay_angle": 28.586, "splay_distance": 4.492, "splay_ratio": 0.247, "d22": 4.184, "d64": 4.372, "eta": 173.780, "theta": -135.927, "eta_prime": -174.027, "theta_prime": -131.527, "eta_base": -133.863, "theta_base": -91.570, "v0": 1.451, "v1": -23.352, "v2": 35.148, "v3": -35.270, "v4": 21.345, "amplitude": 36.637, "phase_angle": 16.388, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.920, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 275.342, 168.006, 113.109 ], "x_axis": [ 0.618, 0.685, 0.387 ], "y_axis": [ -0.245, 0.635, -0.733 ], "z_axis": [ -0.747, 0.358, 0.560 ], "quaternion": [ 0.838, -0.325, -0.338, 0.277 ] } }, { "index": 1614, "index_chain": 1614, "chain_name": "2", "nt_resnum": 1786, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1786", "linked_nts": [ "///2/1785", "///2/1787" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -57.293, "beta": 161.266, "gamma": 59.516, "delta": 80.900, "epsilon": -137.243, "zeta": -103.173, "epsilon_zeta": -34.070, "bb_type": "BI", "chi": -159.127, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.723, 0.481 ], "P_xyz": [ 1.206, 9.037, 0.175 ], "form": ".", "ssZp": 4.370, "Dp": 4.697, "splay_angle": 29.062, "splay_distance": 4.634, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 171.776, "theta": -163.752, "eta_prime": -166.995, "theta_prime": -164.292, "eta_base": -110.365, "theta_base": -165.903, "v0": 2.751, "v1": -24.845, "v2": 36.315, "v3": -35.722, "v4": 20.789, "amplitude": 37.511, "phase_angle": 14.505, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.852, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 274.090, 171.093, 116.123 ], "x_axis": [ 0.251, 0.945, -0.208 ], "y_axis": [ -0.644, 0.002, -0.765 ], "z_axis": [ -0.723, 0.326, 0.609 ], "quaternion": [ 0.682, -0.400, -0.189, 0.582 ] } }, { "index": 1615, "index_chain": 1615, "chain_name": "2", "nt_resnum": 1787, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1787", "linked_nts": [ "///2/1786", "///2/1788" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -57.142, "beta": 156.143, "gamma": 51.492, "delta": 79.960, "epsilon": -150.984, "zeta": -75.215, "epsilon_zeta": -75.769, "bb_type": "BI", "chi": -166.059, "glyco_bond": "anti", "C5prime_xyz": [ -1.690, 8.782, 0.857 ], "P_xyz": [ 0.874, 9.280, 1.013 ], "form": "A", "ssZp": 4.485, "Dp": 4.565, "splay_angle": 21.326, "splay_distance": 3.429, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 165.783, "theta": -146.799, "eta_prime": 169.846, "theta_prime": -148.161, "eta_base": 176.590, "theta_base": -122.397, "v0": -0.940, "v1": -21.811, "v2": 34.934, "v3": -36.459, "v4": 23.572, "amplitude": 37.179, "phase_angle": 20.014, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.336, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 272.058, 170.434, 120.235 ], "x_axis": [ 0.385, 0.742, -0.549 ], "y_axis": [ -0.679, -0.176, -0.713 ], "z_axis": [ -0.625, 0.647, 0.436 ], "quaternion": [ 0.641, -0.530, -0.030, 0.554 ] } }, { "index": 1616, "index_chain": 1616, "chain_name": "2", "nt_resnum": 1788, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1788", "linked_nts": [ "///2/1787", "///2/1789" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.163, "beta": 165.682, "gamma": 55.963, "delta": 80.348, "epsilon": -136.073, "zeta": -71.468, "epsilon_zeta": -64.605, "bb_type": "BI", "chi": -165.075, "glyco_bond": "anti", "C5prime_xyz": [ -1.667, 8.745, 0.798 ], "P_xyz": [ 0.877, 9.329, 1.014 ], "form": ".", "ssZp": 4.450, "Dp": 4.629, "splay_angle": 31.661, "splay_distance": 4.947, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 171.785, "theta": -132.433, "eta_prime": -175.824, "theta_prime": -128.077, "eta_base": -135.552, "theta_base": -80.041, "v0": -0.828, "v1": -21.769, "v2": 34.803, "v3": -36.245, "v4": 23.392, "amplitude": 37.004, "phase_angle": 19.863, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.943, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 271.462, 173.194, 122.181 ], "x_axis": [ -0.013, 0.515, -0.857 ], "y_axis": [ -0.812, -0.506, -0.292 ], "z_axis": [ -0.584, 0.692, 0.425 ], "quaternion": [ 0.476, -0.517, 0.143, 0.697 ] } }, { "index": 1617, "index_chain": 1617, "chain_name": "2", "nt_resnum": 1789, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1789", "linked_nts": [ "///2/1788", "///2/1790" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -55.847, "beta": 159.756, "gamma": 56.671, "delta": 81.261, "epsilon": -151.175, "zeta": -127.876, "epsilon_zeta": -23.299, "bb_type": "--", "chi": -159.037, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.746, 0.464 ], "P_xyz": [ 1.294, 8.983, 0.163 ], "form": ".", "ssZp": 4.416, "Dp": 4.640, "splay_angle": 51.693, "splay_distance": 7.758, "splay_ratio": 0.436, "d22": null, "d64": null, "eta": 165.702, "theta": 165.060, "eta_prime": -169.259, "theta_prime": 167.065, "eta_base": -100.961, "theta_base": 171.177, "v0": 3.342, "v1": -25.220, "v2": 36.328, "v3": -35.377, "v4": 20.220, "amplitude": 37.375, "phase_angle": 13.593, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.815, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 268.596, 176.930, 120.664 ], "x_axis": [ -0.673, -0.086, -0.735 ], "y_axis": [ -0.512, -0.663, 0.546 ], "z_axis": [ -0.534, 0.743, 0.402 ], "quaternion": [ 0.129, -0.384, 0.390, 0.827 ] } }, { "index": 1618, "index_chain": 1618, "chain_name": "2", "nt_resnum": 1790, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1790", "linked_nts": [ "///2/1789", "///2/1791" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -47.220, "beta": 152.524, "gamma": 50.036, "delta": 79.833, "epsilon": -145.386, "zeta": -76.578, "epsilon_zeta": -68.808, "bb_type": "BI", "chi": -173.225, "glyco_bond": "anti", "C5prime_xyz": [ -1.413, 8.509, 1.295 ], "P_xyz": [ 1.197, 8.675, 1.404 ], "form": "A", "ssZp": 4.679, "Dp": 4.697, "splay_angle": 24.988, "splay_distance": 3.941, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 179.099, "theta": -142.753, "eta_prime": 173.011, "theta_prime": -143.712, "eta_base": 169.248, "theta_base": -125.577, "v0": 4.010, "v1": -26.377, "v2": 37.566, "v3": -36.282, "v4": 20.347, "amplitude": 38.521, "phase_angle": 12.788, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.830, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 270.392, 181.764, 126.460 ], "x_axis": [ -0.405, -0.077, -0.911 ], "y_axis": [ -0.525, -0.796, 0.301 ], "z_axis": [ -0.748, 0.600, 0.282 ], "quaternion": [ 0.142, -0.526, 0.286, 0.788 ] } }, { "index": 1619, "index_chain": 1619, "chain_name": "2", "nt_resnum": 1791, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1791", "linked_nts": [ "///2/1790", "///2/1792" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -56.741, "beta": 167.334, "gamma": 56.221, "delta": 79.089, "epsilon": -131.758, "zeta": -60.437, "epsilon_zeta": -71.322, "bb_type": "BI", "chi": -171.428, "glyco_bond": "anti", "C5prime_xyz": [ -1.620, 8.615, 1.163 ], "P_xyz": [ 0.921, 9.169, 1.448 ], "form": ".", "ssZp": 4.644, "Dp": 4.726, "splay_angle": 39.942, "splay_distance": 6.115, "splay_ratio": 0.342, "d22": null, "d64": null, "eta": 175.547, "theta": -121.062, "eta_prime": -172.827, "theta_prime": -115.048, "eta_base": -138.964, "theta_base": -68.771, "v0": 1.174, "v1": -24.149, "v2": 36.661, "v3": -37.008, "v4": 22.594, "amplitude": 38.316, "phase_angle": 16.899, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.909, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 268.796, 185.355, 126.177 ], "x_axis": [ -0.605, -0.464, -0.647 ], "y_axis": [ -0.255, -0.657, 0.710 ], "z_axis": [ -0.754, 0.594, 0.280 ], "quaternion": [ -0.066, -0.439, 0.409, 0.797 ] } }, { "index": 1620, "index_chain": 1620, "chain_name": "2", "nt_resnum": 1792, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1792", "linked_nts": [ "///2/1791", "///2/1793" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -62.155, "beta": 163.984, "gamma": 62.407, "delta": 80.544, "epsilon": -148.340, "zeta": -80.897, "epsilon_zeta": -67.443, "bb_type": "BI", "chi": -169.250, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.642, 1.065 ], "P_xyz": [ 1.236, 8.976, 0.984 ], "form": "A", "ssZp": 4.621, "Dp": 4.667, "splay_angle": 24.478, "splay_distance": 3.880, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 164.986, "theta": -151.684, "eta_prime": -164.475, "theta_prime": -153.164, "eta_base": -91.519, "theta_base": -144.686, "v0": 3.453, "v1": -25.634, "v2": 36.875, "v3": -35.884, "v4": 20.469, "amplitude": 37.924, "phase_angle": 13.509, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.714, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 262.782, 184.449, 125.541 ], "x_axis": [ -0.493, -0.798, 0.346 ], "y_axis": [ 0.442, 0.113, 0.890 ], "z_axis": [ -0.749, 0.592, 0.297 ], "quaternion": [ -0.479, -0.156, 0.572, 0.647 ] } }, { "index": 1621, "index_chain": 1621, "chain_name": "2", "nt_resnum": 1793, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1793", "linked_nts": [ "///2/1792", "///2/1794" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.070, "beta": 177.575, "gamma": 48.619, "delta": 80.565, "epsilon": -158.213, "zeta": -81.113, "epsilon_zeta": -77.100, "bb_type": "BI", "chi": -166.936, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.669, 0.930 ], "P_xyz": [ 0.984, 9.173, 1.588 ], "form": ".", "ssZp": 4.509, "Dp": 4.555, "splay_angle": 26.176, "splay_distance": 4.136, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 167.491, "theta": -161.688, "eta_prime": 175.202, "theta_prime": -159.889, "eta_base": -163.306, "theta_base": -150.249, "v0": 1.471, "v1": -23.677, "v2": 35.633, "v3": -35.765, "v4": 21.624, "amplitude": 37.141, "phase_angle": 16.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.900, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 259.684, 186.435, 124.309 ], "x_axis": [ -0.054, -0.810, 0.584 ], "y_axis": [ 0.588, 0.447, 0.674 ], "z_axis": [ -0.807, 0.380, 0.452 ], "quaternion": [ 0.679, 0.108, -0.512, -0.515 ] } }, { "index": 1622, "index_chain": 1622, "chain_name": "2", "nt_resnum": 1794, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1794", "linked_nts": [ "///2/1793", "///2/1795" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -60.955, "beta": 177.400, "gamma": 51.326, "delta": 80.350, "epsilon": -137.215, "zeta": -71.834, "epsilon_zeta": -65.381, "bb_type": "BI", "chi": -160.629, "glyco_bond": "anti", "C5prime_xyz": [ -1.322, 8.777, 0.556 ], "P_xyz": [ 1.238, 9.229, 0.890 ], "form": ".", "ssZp": 4.410, "Dp": 4.693, "splay_angle": 32.151, "splay_distance": 5.034, "splay_ratio": 0.277, "d22": null, "d64": null, "eta": 176.454, "theta": -135.943, "eta_prime": -179.906, "theta_prime": -131.987, "eta_base": -165.667, "theta_base": -93.398, "v0": 1.869, "v1": -24.113, "v2": 35.965, "v3": -35.885, "v4": 21.465, "amplitude": 37.382, "phase_angle": 15.822, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.875, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 255.817, 187.565, 123.375 ], "x_axis": [ 0.180, -0.607, 0.774 ], "y_axis": [ 0.522, 0.726, 0.447 ], "z_axis": [ -0.834, 0.323, 0.447 ], "quaternion": [ 0.767, 0.040, -0.524, -0.368 ] } }, { "index": 1623, "index_chain": 1623, "chain_name": "2", "nt_resnum": 1795, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1795", "linked_nts": [ "///2/1794", "///2/1796" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.507, "beta": 168.363, "gamma": 52.477, "delta": 80.977, "epsilon": -149.955, "zeta": -74.998, "epsilon_zeta": -74.957, "bb_type": "BI", "chi": 179.645, "glyco_bond": "anti", "C5prime_xyz": [ -1.575, 8.469, 1.677 ], "P_xyz": [ 0.918, 8.734, 2.443 ], "form": "A", "ssZp": 4.585, "Dp": 4.614, "splay_angle": 24.416, "splay_distance": 3.773, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 164.149, "theta": -148.153, "eta_prime": -176.709, "theta_prime": -145.674, "eta_base": -119.739, "theta_base": -122.881, "v0": 1.740, "v1": -23.766, "v2": 35.529, "v3": -35.500, "v4": 21.305, "amplitude": 36.956, "phase_angle": 15.973, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 252.976, 187.294, 127.522 ], "x_axis": [ 0.820, -0.088, 0.565 ], "y_axis": [ 0.341, 0.868, -0.360 ], "z_axis": [ -0.459, 0.488, 0.742 ], "quaternion": [ 0.926, -0.229, -0.277, -0.116 ] } }, { "index": 1624, "index_chain": 1624, "chain_name": "2", "nt_resnum": 1796, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1796", "linked_nts": [ "///2/1795", "///2/1797" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -68.906, "beta": -173.980, "gamma": 50.962, "delta": 83.335, "epsilon": -152.905, "zeta": -77.302, "epsilon_zeta": -75.603, "bb_type": "BI", "chi": -164.544, "glyco_bond": "anti", "C5prime_xyz": [ -1.167, 8.661, 0.841 ], "P_xyz": [ 1.340, 8.881, 1.579 ], "form": "A", "ssZp": 4.487, "Dp": 4.593, "splay_angle": 22.542, "splay_distance": 3.570, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 171.052, "theta": -151.027, "eta_prime": -179.713, "theta_prime": -148.894, "eta_base": -145.908, "theta_base": -133.597, "v0": 4.240, "v1": -24.972, "v2": 35.076, "v3": -33.626, "v4": 18.558, "amplitude": 35.861, "phase_angle": 12.013, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.913, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 250.920, 186.987, 130.670 ], "x_axis": [ 0.896, 0.394, 0.206 ], "y_axis": [ -0.191, 0.759, -0.622 ], "z_axis": [ -0.401, 0.518, 0.755 ], "quaternion": [ 0.923, -0.309, -0.164, 0.158 ] } }, { "index": 1625, "index_chain": 1625, "chain_name": "2", "nt_resnum": 1797, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1797", "linked_nts": [ "///2/1796", "///2/1798" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -60.393, "beta": 168.078, "gamma": 56.503, "delta": 82.763, "epsilon": -155.083, "zeta": -73.885, "epsilon_zeta": -81.198, "bb_type": "BI", "chi": -163.659, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.734, 0.740 ], "P_xyz": [ 1.069, 9.166, 1.022 ], "form": "A", "ssZp": 4.378, "Dp": 4.492, "splay_angle": 22.446, "splay_distance": 3.553, "splay_ratio": 0.195, "d22": 4.595, "d64": 4.398, "eta": 171.649, "theta": -148.302, "eta_prime": -175.298, "theta_prime": -148.216, "eta_base": -147.921, "theta_base": -123.119, "v0": 0.069, "v1": -21.402, "v2": 33.319, "v3": -34.203, "v4": 21.552, "amplitude": 35.132, "phase_angle": 18.486, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.934, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 249.732, 187.114, 134.035 ], "x_axis": [ 0.752, 0.650, -0.112 ], "y_axis": [ -0.566, 0.549, -0.615 ], "z_axis": [ -0.338, 0.525, 0.781 ], "quaternion": [ 0.878, -0.325, -0.064, 0.346 ] } }, { "index": 1626, "index_chain": 1626, "chain_name": "2", "nt_resnum": 1798, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1798", "linked_nts": [ "///2/1797", "///2/1799" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -66.331, "beta": 177.104, "gamma": 53.611, "delta": 84.104, "epsilon": -167.861, "zeta": 30.535, "epsilon_zeta": 161.604, "bb_type": "--", "chi": -154.999, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.784, 0.257 ], "P_xyz": [ 1.308, 9.127, 0.556 ], "form": ".", "ssZp": 4.190, "Dp": 4.388, "splay_angle": 36.567, "splay_distance": 6.386, "splay_ratio": 0.323, "d22": null, "d64": null, "eta": 168.725, "theta": -79.072, "eta_prime": -177.060, "theta_prime": -91.783, "eta_base": -138.152, "theta_base": -63.708, "v0": 1.452, "v1": -21.943, "v2": 32.929, "v3": -33.040, "v4": 19.935, "amplitude": 34.303, "phase_angle": 16.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.945, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 249.666, 188.397, 137.348 ], "x_axis": [ 0.329, 0.814, -0.478 ], "y_axis": [ -0.908, 0.134, -0.397 ], "z_axis": [ -0.259, 0.565, 0.783 ], "quaternion": [ 0.749, -0.321, 0.073, 0.575 ] } }, { "index": 1627, "index_chain": 1627, "chain_name": "2", "nt_resnum": 1799, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1799", "linked_nts": [ "///2/1798", "///2/1800" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -153.958, "beta": 96.616, "gamma": 160.764, "delta": 82.332, "epsilon": -90.258, "zeta": -151.242, "epsilon_zeta": 60.984, "bb_type": "--", "chi": -179.844, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.405, 1.670 ], "P_xyz": [ -1.408, 10.587, 0.220 ], "form": ".", "ssZp": 4.582, "Dp": 4.709, "splay_angle": 45.890, "splay_distance": 6.914, "splay_ratio": 0.391, "d22": null, "d64": null, "eta": 174.922, "theta": 114.176, "eta_prime": -161.105, "theta_prime": 140.538, "eta_base": -104.033, "theta_base": 153.814, "v0": 4.029, "v1": -25.293, "v2": 35.749, "v3": -34.438, "v4": 19.218, "amplitude": 36.613, "phase_angle": 12.471, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 249.499, 194.753, 136.757 ], "x_axis": [ -0.437, 0.648, -0.624 ], "y_axis": [ -0.877, -0.460, 0.137 ], "z_axis": [ -0.199, 0.607, 0.769 ], "quaternion": [ 0.467, -0.252, 0.228, 0.816 ] } }, { "index": 1628, "index_chain": 1628, "chain_name": "2", "nt_resnum": 1800, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1800", "linked_nts": [ "///2/1799", "///2/1801" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -79.088, "beta": 138.121, "gamma": 57.211, "delta": 84.286, "epsilon": -135.846, "zeta": -57.493, "epsilon_zeta": -78.354, "bb_type": "BI", "chi": -166.851, "glyco_bond": "anti", "C5prime_xyz": [ -1.220, 8.541, 0.961 ], "P_xyz": [ 1.354, 8.369, 0.471 ], "form": ".", "ssZp": 4.564, "Dp": 4.709, "splay_angle": 36.148, "splay_distance": 5.546, "splay_ratio": 0.310, "d22": null, "d64": null, "eta": 171.094, "theta": -111.424, "eta_prime": 167.055, "theta_prime": -113.145, "eta_base": 161.577, "theta_base": -73.183, "v0": 5.346, "v1": -25.781, "v2": 35.247, "v3": -33.144, "v4": 17.584, "amplitude": 35.818, "phase_angle": 10.242, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.011, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 251.701, 194.612, 143.309 ], "x_axis": [ -0.309, 0.486, -0.818 ], "y_axis": [ -0.904, -0.418, 0.094 ], "z_axis": [ -0.296, 0.768, 0.568 ], "quaternion": [ 0.458, -0.368, 0.284, 0.758 ] } }, { "index": 1629, "index_chain": 1629, "chain_name": "2", "nt_resnum": 1801, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1801", "linked_nts": [ "///2/1800", "///2/1802" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -69.064, "beta": 166.178, "gamma": 64.459, "delta": 81.981, "epsilon": -152.632, "zeta": -73.531, "epsilon_zeta": -79.102, "bb_type": "BI", "chi": -163.182, "glyco_bond": "anti", "C5prime_xyz": [ -1.266, 8.639, 0.717 ], "P_xyz": [ 1.333, 8.895, 0.452 ], "form": "A", "ssZp": 4.512, "Dp": 4.634, "splay_angle": 25.543, "splay_distance": 4.070, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 162.591, "theta": -145.868, "eta_prime": -165.759, "theta_prime": -147.852, "eta_base": -93.399, "theta_base": -131.698, "v0": 4.291, "v1": -25.914, "v2": 36.485, "v3": -34.976, "v4": 19.361, "amplitude": 37.318, "phase_angle": 12.129, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.679, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 248.147, 198.709, 142.153 ], "x_axis": [ -0.939, -0.105, -0.327 ], "y_axis": [ -0.209, -0.581, 0.786 ], "z_axis": [ -0.273, 0.807, 0.524 ], "quaternion": [ 0.030, -0.172, 0.457, 0.872 ] } }, { "index": 1630, "index_chain": 1630, "chain_name": "2", "nt_resnum": 1802, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1802", "linked_nts": [ "///2/1801", "///2/1803" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.967, "beta": 171.185, "gamma": 59.355, "delta": 79.839, "epsilon": -141.498, "zeta": -78.405, "epsilon_zeta": -63.094, "bb_type": "BI", "chi": -160.848, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.822, 0.566 ], "P_xyz": [ 1.129, 9.336, 0.590 ], "form": "A", "ssZp": 4.416, "Dp": 4.646, "splay_angle": 26.388, "splay_distance": 4.229, "splay_ratio": 0.229, "d22": 4.140, "d64": 4.047, "eta": 176.700, "theta": -145.899, "eta_prime": -171.353, "theta_prime": -144.895, "eta_base": -141.163, "theta_base": -122.091, "v0": 0.239, "v1": -22.881, "v2": 35.549, "v3": -36.392, "v4": 22.802, "amplitude": 37.431, "phase_angle": 18.249, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.922, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 247.116, 202.636, 142.429 ], "x_axis": [ -0.928, -0.365, 0.076 ], "y_axis": [ 0.243, -0.437, 0.866 ], "z_axis": [ -0.283, 0.822, 0.494 ], "quaternion": [ -0.180, -0.061, 0.499, 0.845 ] } }, { "index": 1631, "index_chain": 1631, "chain_name": "2", "nt_resnum": 1803, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1803", "linked_nts": [ "///2/1802", "///2/1804" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -65.691, "beta": 176.283, "gamma": 48.225, "delta": 80.997, "epsilon": -148.222, "zeta": -64.295, "epsilon_zeta": -83.927, "bb_type": "BI", "chi": -167.993, "glyco_bond": "anti", "C5prime_xyz": [ -1.578, 8.677, 0.985 ], "P_xyz": [ 0.886, 9.205, 1.705 ], "form": "A", "ssZp": 4.527, "Dp": 4.599, "splay_angle": 24.988, "splay_distance": 3.937, "splay_ratio": 0.218, "d22": 3.945, "d64": 3.937, "eta": 163.673, "theta": -137.405, "eta_prime": 174.146, "theta_prime": -134.294, "eta_base": -150.587, "theta_base": -90.814, "v0": 0.857, "v1": -23.054, "v2": 35.217, "v3": -35.711, "v4": 21.965, "amplitude": 36.886, "phase_angle": 17.303, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.911, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 244.784, 206.019, 143.432 ], "x_axis": [ -0.456, -0.861, 0.225 ], "y_axis": [ 0.731, -0.218, 0.647 ], "z_axis": [ -0.508, 0.460, 0.728 ], "quaternion": [ 0.513, 0.091, -0.357, -0.775 ] } }, { "index": 1632, "index_chain": 1632, "chain_name": "2", "nt_resnum": 1804, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1804", "linked_nts": [ "///2/1803", "///2/1805" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -67.628, "beta": 174.029, "gamma": 54.595, "delta": 80.450, "epsilon": -145.908, "zeta": -76.094, "epsilon_zeta": -69.814, "bb_type": "BI", "chi": -162.113, "glyco_bond": "anti", "C5prime_xyz": [ -1.419, 8.714, 0.653 ], "P_xyz": [ 1.159, 9.162, 0.872 ], "form": ".", "ssZp": 4.473, "Dp": 4.653, "splay_angle": 15.716, "splay_distance": 2.615, "splay_ratio": 0.142, "d22": null, "d64": null, "eta": 165.428, "theta": -146.430, "eta_prime": -175.935, "theta_prime": -146.902, "eta_base": -115.333, "theta_base": -135.371, "v0": 2.162, "v1": -24.379, "v2": 36.125, "v3": -35.850, "v4": 21.241, "amplitude": 37.464, "phase_angle": 15.365, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.960, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 241.754, 205.661, 145.919 ], "x_axis": [ 0.215, -0.778, 0.591 ], "y_axis": [ 0.809, 0.480, 0.338 ], "z_axis": [ -0.547, 0.405, 0.733 ], "quaternion": [ 0.779, -0.022, -0.365, -0.509 ] } }, { "index": 1633, "index_chain": 1633, "chain_name": "2", "nt_resnum": 1805, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1805", "linked_nts": [ "///2/1804", "///2/1806" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -62.780, "beta": 175.967, "gamma": 42.095, "delta": 80.075, "epsilon": -157.105, "zeta": -91.507, "epsilon_zeta": -65.598, "bb_type": "BI", "chi": -148.711, "glyco_bond": "anti", "C5prime_xyz": [ -1.458, 8.831, -0.170 ], "P_xyz": [ 1.065, 9.514, -0.015 ], "form": ".", "ssZp": 4.095, "Dp": 4.565, "splay_angle": 26.026, "splay_distance": 4.107, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 159.535, "theta": -169.522, "eta_prime": 169.947, "theta_prime": -167.470, "eta_base": -165.005, "theta_base": -153.897, "v0": 0.855, "v1": -23.302, "v2": 35.630, "v3": -36.149, "v4": 22.250, "amplitude": 37.326, "phase_angle": 17.342, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.754, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 239.378, 205.544, 147.005 ], "x_axis": [ 0.705, -0.523, 0.480 ], "y_axis": [ 0.457, 0.852, 0.257 ], "z_axis": [ -0.543, 0.038, 0.839 ], "quaternion": [ 0.921, 0.060, -0.277, -0.266 ] } }, { "index": 1634, "index_chain": 1634, "chain_name": "2", "nt_resnum": 1806, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1806", "linked_nts": [ "///2/1805", "///2/1807" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -52.606, "beta": 153.929, "gamma": 59.857, "delta": 81.838, "epsilon": -150.218, "zeta": -77.226, "epsilon_zeta": -72.993, "bb_type": "BI", "chi": -157.959, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.729, 0.407 ], "P_xyz": [ 1.192, 8.958, -0.053 ], "form": "A", "ssZp": 4.360, "Dp": 4.607, "splay_angle": 25.593, "splay_distance": 4.017, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 174.218, "theta": -145.351, "eta_prime": -176.695, "theta_prime": -147.578, "eta_base": -156.527, "theta_base": -120.984, "v0": 2.224, "v1": -23.934, "v2": 35.330, "v3": -35.007, "v4": 20.686, "amplitude": 36.610, "phase_angle": 15.196, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.558, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 236.103, 205.303, 149.472 ], "x_axis": [ 0.808, -0.250, 0.533 ], "y_axis": [ 0.211, 0.968, 0.134 ], "z_axis": [ -0.550, 0.004, 0.835 ], "quaternion": [ 0.950, 0.034, -0.285, -0.121 ] } }, { "index": 1635, "index_chain": 1635, "chain_name": "2", "nt_resnum": 1807, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1807", "linked_nts": [ "///2/1806", "///2/1808" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -57.255, "beta": 163.583, "gamma": 57.627, "delta": 80.659, "epsilon": -137.100, "zeta": -69.259, "epsilon_zeta": -67.840, "bb_type": "BI", "chi": -159.635, "glyco_bond": "anti", "C5prime_xyz": [ -1.245, 8.766, 0.520 ], "P_xyz": [ 1.360, 9.019, 0.350 ], "form": ".", "ssZp": 4.386, "Dp": 4.699, "splay_angle": 30.204, "splay_distance": 4.779, "splay_ratio": 0.261, "d22": 4.074, "d64": 4.502, "eta": 174.232, "theta": -130.733, "eta_prime": -172.001, "theta_prime": -127.485, "eta_base": -130.023, "theta_base": -91.091, "v0": 2.941, "v1": -25.147, "v2": 36.618, "v3": -35.879, "v4": 20.784, "amplitude": 37.777, "phase_angle": 14.227, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 234.776, 204.208, 153.102 ], "x_axis": [ 0.792, 0.340, 0.506 ], "y_axis": [ -0.298, 0.940, -0.165 ], "z_axis": [ -0.532, -0.020, 0.846 ], "quaternion": [ 0.946, -0.038, -0.275, 0.169 ] } }, { "index": 1636, "index_chain": 1636, "chain_name": "2", "nt_resnum": 1808, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1808", "linked_nts": [ "///2/1807", "///2/1809" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.845, "beta": 157.238, "gamma": 66.755, "delta": 79.614, "epsilon": -118.383, "zeta": -101.885, "epsilon_zeta": -16.498, "bb_type": "--", "chi": -161.096, "glyco_bond": "anti", "C5prime_xyz": [ -1.517, 8.748, 0.577 ], "P_xyz": [ 1.004, 9.207, 0.030 ], "form": ".", "ssZp": 4.295, "Dp": 4.738, "splay_angle": 23.757, "splay_distance": 3.774, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 177.568, "theta": -152.554, "eta_prime": -160.694, "theta_prime": -153.749, "eta_base": -106.534, "theta_base": -153.536, "v0": 1.513, "v1": -24.299, "v2": 36.610, "v3": -36.708, "v4": 22.194, "amplitude": 38.156, "phase_angle": 16.367, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.618, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 235.243, 205.373, 157.713 ], "x_axis": [ 0.357, 0.893, 0.274 ], "y_axis": [ -0.801, 0.443, -0.403 ], "z_axis": [ -0.481, -0.075, 0.873 ], "quaternion": [ 0.818, -0.100, -0.231, 0.518 ] } }, { "index": 1637, "index_chain": 1637, "chain_name": "2", "nt_resnum": 1809, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1809", "linked_nts": [ "///2/1808", "///2/1810" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -76.081, "beta": 166.104, "gamma": 42.716, "delta": 81.345, "epsilon": -174.103, "zeta": -89.988, "epsilon_zeta": -84.115, "bb_type": "BI", "chi": -166.351, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.628, 0.920 ], "P_xyz": [ 1.305, 8.873, 1.433 ], "form": "A", "ssZp": 4.422, "Dp": 4.439, "splay_angle": 23.916, "splay_distance": 3.735, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 142.978, "theta": -146.304, "eta_prime": 150.798, "theta_prime": -150.242, "eta_base": 166.002, "theta_base": -136.358, "v0": 3.353, "v1": -24.914, "v2": 35.827, "v3": -34.913, "v4": 19.920, "amplitude": 36.852, "phase_angle": 13.546, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.214, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 234.148, 203.892, 161.007 ], "x_axis": [ 0.309, 0.706, -0.638 ], "y_axis": [ -0.918, 0.047, -0.393 ], "z_axis": [ -0.247, 0.707, 0.663 ], "quaternion": [ 0.710, -0.387, 0.137, 0.571 ] } }, { "index": 1638, "index_chain": 1638, "chain_name": "2", "nt_resnum": 1810, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1810", "linked_nts": [ "///2/1809", "///2/1811" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 178.805, "beta": -143.813, "gamma": 149.422, "delta": 83.240, "epsilon": -174.418, "zeta": -79.009, "epsilon_zeta": -95.410, "bb_type": "BI", "chi": 177.856, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.337, 1.819 ], "P_xyz": [ 0.986, 9.083, 1.115 ], "form": ".", "ssZp": 4.178, "Dp": 4.358, "splay_angle": 24.453, "splay_distance": 3.582, "splay_ratio": 0.212, "d22": 5.407, "d64": 4.742, "eta": 160.672, "theta": -154.140, "eta_prime": -179.594, "theta_prime": -156.674, "eta_base": -146.640, "theta_base": -142.026, "v0": 2.814, "v1": -23.388, "v2": 33.875, "v3": -33.205, "v4": 19.178, "amplitude": 34.927, "phase_angle": 14.097, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.109, "frame": { "rmsd": 0.008, "origin": [ 235.200, 205.662, 164.123 ], "x_axis": [ -0.116, 0.610, -0.784 ], "y_axis": [ -0.968, -0.245, -0.048 ], "z_axis": [ -0.221, 0.754, 0.619 ], "quaternion": [ 0.561, -0.357, 0.251, 0.703 ] } }, { "index": 1639, "index_chain": 1639, "chain_name": "2", "nt_resnum": 1811, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1811", "linked_nts": [ "///2/1810", "///2/1812" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -129.085, "beta": -127.213, "gamma": 79.891, "delta": 82.032, "epsilon": -151.668, "zeta": -77.976, "epsilon_zeta": -73.692, "bb_type": "BI", "chi": -159.972, "glyco_bond": "anti", "C5prime_xyz": [ -1.147, 8.718, 0.532 ], "P_xyz": [ 1.387, 8.318, 1.111 ], "form": "A", "ssZp": 4.440, "Dp": 4.632, "splay_angle": 25.125, "splay_distance": 3.952, "splay_ratio": 0.218, "d22": 4.511, "d64": 4.735, "eta": 166.783, "theta": -141.385, "eta_prime": 169.353, "theta_prime": -141.471, "eta_base": -167.022, "theta_base": -126.602, "v0": 4.082, "v1": -25.641, "v2": 36.318, "v3": -34.913, "v4": 19.460, "amplitude": 37.191, "phase_angle": 12.436, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 236.483, 207.751, 166.735 ], "x_axis": [ -0.633, 0.273, -0.725 ], "y_axis": [ -0.729, -0.525, 0.439 ], "z_axis": [ -0.260, 0.806, 0.531 ], "quaternion": [ 0.306, -0.300, 0.380, 0.820 ] } }, { "index": 1640, "index_chain": 1640, "chain_name": "2", "nt_resnum": 1812, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1812", "linked_nts": [ "///2/1811", "///2/1813" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -55.397, "beta": 166.443, "gamma": 55.722, "delta": 80.850, "epsilon": -149.652, "zeta": -85.971, "epsilon_zeta": -63.682, "bb_type": "BI", "chi": -160.874, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.724, 0.582 ], "P_xyz": [ 1.166, 9.124, 0.587 ], "form": ".", "ssZp": 4.436, "Dp": 4.620, "splay_angle": 42.872, "splay_distance": 6.572, "splay_ratio": 0.366, "d22": null, "d64": null, "eta": 174.377, "theta": -157.924, "eta_prime": -172.648, "theta_prime": -155.271, "eta_base": -141.946, "theta_base": -136.617, "v0": 1.939, "v1": -23.974, "v2": 35.704, "v3": -35.583, "v4": 21.214, "amplitude": 37.087, "phase_angle": 15.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.884, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 236.434, 211.546, 167.838 ], "x_axis": [ -0.880, -0.010, -0.475 ], "y_axis": [ -0.385, -0.571, 0.726 ], "z_axis": [ -0.279, 0.821, 0.498 ], "quaternion": [ 0.109, -0.219, 0.450, 0.859 ] } }, { "index": 1641, "index_chain": 1641, "chain_name": "2", "nt_resnum": 1813, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1813", "linked_nts": [ "///2/1812", "///2/1814" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -53.705, "beta": -175.388, "gamma": 45.613, "delta": 81.709, "epsilon": -119.475, "zeta": -56.953, "epsilon_zeta": -62.523, "bb_type": "--", "chi": 176.189, "glyco_bond": "anti", "C5prime_xyz": [ -1.654, 8.304, 1.872 ], "P_xyz": [ 0.558, 8.443, 3.270 ], "form": ".", "ssZp": 4.693, "Dp": 4.715, "splay_angle": 40.112, "splay_distance": 6.164, "splay_ratio": 0.344, "d22": null, "d64": null, "eta": -171.800, "theta": -107.234, "eta_prime": -172.010, "theta_prime": -98.092, "eta_base": -153.866, "theta_base": -40.441, "v0": 2.236, "v1": -23.908, "v2": 35.304, "v3": -35.009, "v4": 20.660, "amplitude": 36.584, "phase_angle": 15.202, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.714, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 235.579, 217.589, 170.276 ], "x_axis": [ -0.686, -0.521, -0.508 ], "y_axis": [ 0.241, -0.821, 0.518 ], "z_axis": [ -0.687, 0.233, 0.688 ], "quaternion": [ -0.213, -0.334, 0.210, 0.894 ] } }, { "index": 1642, "index_chain": 1642, "chain_name": "2", "nt_resnum": 1814, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1814", "linked_nts": [ "///2/1813", "///2/1815" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,internal-loop", "alpha": -60.752, "beta": 161.400, "gamma": 54.113, "delta": 80.790, "epsilon": -113.154, "zeta": 160.345, "epsilon_zeta": 86.501, "bb_type": "BII", "chi": -167.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.709, 0.968 ], "P_xyz": [ 1.076, 9.090, 1.120 ], "form": ".", "ssZp": 4.449, "Dp": 4.723, "splay_angle": 84.159, "splay_distance": 11.843, "splay_ratio": 0.671, "d22": null, "d64": null, "eta": 161.510, "theta": 115.161, "eta_prime": -166.712, "theta_prime": 123.872, "eta_base": -85.516, "theta_base": 146.816, "v0": 1.337, "v1": -23.637, "v2": 35.715, "v3": -35.948, "v4": 21.836, "amplitude": 37.272, "phase_angle": 16.620, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.493, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 230.809, 213.876, 171.479 ], "x_axis": [ 0.023, -0.942, 0.334 ], "y_axis": [ 0.700, 0.253, 0.667 ], "z_axis": [ -0.713, 0.218, 0.666 ], "quaternion": [ 0.697, 0.161, -0.376, -0.589 ] } }, { "index": 1643, "index_chain": 1643, "chain_name": "2", "nt_resnum": 1815, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1815", "linked_nts": [ "///2/1814", "///2/1816" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": -66.723, "beta": 131.429, "gamma": 44.792, "delta": 80.845, "epsilon": -123.930, "zeta": -53.598, "epsilon_zeta": -70.333, "bb_type": "--", "chi": -179.091, "glyco_bond": "anti", "C5prime_xyz": [ -1.474, 8.396, 1.623 ], "P_xyz": [ 1.137, 8.175, 1.698 ], "form": ".", "ssZp": 4.744, "Dp": 4.765, "splay_angle": 43.554, "splay_distance": 6.605, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": -179.170, "theta": -98.753, "eta_prime": 178.461, "theta_prime": -96.223, "eta_base": 166.285, "theta_base": -52.982, "v0": 3.636, "v1": -25.594, "v2": 36.646, "v3": -35.566, "v4": 20.136, "amplitude": 37.641, "phase_angle": 13.210, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.297, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 230.184, 225.547, 173.389 ], "x_axis": [ -0.517, -0.755, -0.405 ], "y_axis": [ 0.538, -0.654, 0.532 ], "z_axis": [ -0.666, 0.057, 0.744 ], "quaternion": [ -0.379, -0.314, 0.172, 0.854 ] } }, { "index": 1644, "index_chain": 1644, "chain_name": "2", "nt_resnum": 1816, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1816", "linked_nts": [ "///2/1815", "///2/1817" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor", "alpha": -64.213, "beta": 162.100, "gamma": 62.910, "delta": 82.067, "epsilon": -147.640, "zeta": -79.444, "epsilon_zeta": -68.197, "bb_type": "BI", "chi": -172.266, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.629, 1.243 ], "P_xyz": [ 1.123, 8.958, 1.357 ], "form": "A", "ssZp": 4.575, "Dp": 4.605, "splay_angle": 22.295, "splay_distance": 3.485, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 159.608, "theta": -147.002, "eta_prime": -163.200, "theta_prime": -147.785, "eta_base": -81.672, "theta_base": -124.095, "v0": 1.552, "v1": -23.148, "v2": 34.711, "v3": -34.776, "v4": 20.968, "amplitude": 36.147, "phase_angle": 16.204, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.512, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 226.734, 220.268, 175.348 ], "x_axis": [ 0.362, -0.853, 0.376 ], "y_axis": [ 0.660, 0.519, 0.543 ], "z_axis": [ -0.658, 0.052, 0.751 ], "quaternion": [ 0.811, 0.151, -0.319, -0.466 ] } }, { "index": 1645, "index_chain": 1645, "chain_name": "2", "nt_resnum": 1817, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1817", "linked_nts": [ "///2/1816", "///2/1818" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -58.814, "beta": 169.589, "gamma": 52.428, "delta": 83.347, "epsilon": -132.045, "zeta": -93.876, "epsilon_zeta": -38.169, "bb_type": "--", "chi": -162.370, "glyco_bond": "anti", "C5prime_xyz": [ -1.316, 8.730, 0.695 ], "P_xyz": [ 1.276, 9.013, 1.000 ], "form": ".", "ssZp": 4.397, "Dp": 4.665, "splay_angle": 27.006, "splay_distance": 4.199, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 174.854, "theta": -145.565, "eta_prime": -174.594, "theta_prime": -140.473, "eta_base": -138.414, "theta_base": -102.300, "v0": 2.331, "v1": -23.224, "v2": 34.092, "v3": -33.727, "v4": 19.809, "amplitude": 35.283, "phase_angle": 14.931, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 223.804, 219.276, 176.953 ], "x_axis": [ 0.663, -0.424, 0.617 ], "y_axis": [ 0.314, 0.906, 0.285 ], "z_axis": [ -0.679, 0.005, 0.734 ], "quaternion": [ 0.909, 0.077, -0.357, -0.203 ] } }, { "index": 1646, "index_chain": 1646, "chain_name": "2", "nt_resnum": 1818, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1818", "linked_nts": [ "///2/1817", "///2/1819" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -45.891, "beta": 147.980, "gamma": 53.171, "delta": 82.957, "epsilon": -168.856, "zeta": -89.737, "epsilon_zeta": -79.119, "bb_type": "BI", "chi": -158.250, "glyco_bond": "anti", "C5prime_xyz": [ -1.119, 8.628, 0.446 ], "P_xyz": [ 1.465, 8.496, 0.014 ], "form": "A", "ssZp": 4.377, "Dp": 4.506, "splay_angle": 22.620, "splay_distance": 3.684, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 164.777, "theta": -133.853, "eta_prime": -173.493, "theta_prime": -147.086, "eta_base": -118.911, "theta_base": -144.627, "v0": 5.527, "v1": -26.262, "v2": 35.921, "v3": -33.732, "v4": 17.818, "amplitude": 36.490, "phase_angle": 10.134, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.374, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 222.150, 218.784, 180.781 ], "x_axis": [ 0.710, 0.261, 0.654 ], "y_axis": [ -0.224, 0.964, -0.141 ], "z_axis": [ -0.667, -0.046, 0.743 ], "quaternion": [ 0.924, -0.026, -0.357, 0.131 ] } }, { "index": 1647, "index_chain": 1647, "chain_name": "2", "nt_resnum": 1819, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1819", "linked_nts": [ "///2/1818", "///2/1820" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 164.548, "beta": -145.586, "gamma": 160.887, "delta": 81.628, "epsilon": -118.951, "zeta": -99.049, "epsilon_zeta": -19.902, "bb_type": "--", "chi": -176.646, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.418, 1.500 ], "P_xyz": [ 0.618, 9.554, 0.266 ], "form": "A", "ssZp": 4.707, "Dp": 4.770, "splay_angle": 25.169, "splay_distance": 3.934, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 165.958, "theta": -160.360, "eta_prime": 177.470, "theta_prime": -157.705, "eta_base": -159.323, "theta_base": -138.600, "v0": 4.343, "v1": -25.822, "v2": 36.328, "v3": -34.848, "v4": 19.251, "amplitude": 37.151, "phase_angle": 12.082, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.322, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 220.414, 216.556, 183.147 ], "x_axis": [ 0.612, 0.582, 0.536 ], "y_axis": [ -0.530, 0.805, -0.268 ], "z_axis": [ -0.587, -0.120, 0.800 ], "quaternion": [ 0.897, -0.041, -0.313, 0.310 ] } }, { "index": 1648, "index_chain": 1648, "chain_name": "2", "nt_resnum": 1820, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1820", "linked_nts": [ "///2/1819", "///2/1821" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.939, "beta": 151.694, "gamma": 65.511, "delta": 81.384, "epsilon": -158.380, "zeta": -72.277, "epsilon_zeta": -86.103, "bb_type": "BI", "chi": -155.888, "glyco_bond": "anti", "C5prime_xyz": [ -1.524, 8.812, 0.289 ], "P_xyz": [ 0.983, 9.126, -0.399 ], "form": "A", "ssZp": 4.300, "Dp": 4.531, "splay_angle": 22.464, "splay_distance": 3.595, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 167.330, "theta": -147.430, "eta_prime": -176.883, "theta_prime": -153.589, "eta_base": -146.278, "theta_base": -133.238, "v0": 1.415, "v1": -23.611, "v2": 35.562, "v3": -35.691, "v4": 21.632, "amplitude": 37.078, "phase_angle": 16.441, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.232, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 219.480, 214.998, 186.636 ], "x_axis": [ 0.286, 0.896, 0.339 ], "y_axis": [ -0.848, 0.402, -0.346 ], "z_axis": [ -0.447, -0.188, 0.875 ], "quaternion": [ 0.800, -0.049, -0.245, 0.545 ] } }, { "index": 1649, "index_chain": 1649, "chain_name": "2", "nt_resnum": 1821, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1821", "linked_nts": [ "///2/1820", "///2/1822" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.205, "beta": 167.789, "gamma": 57.797, "delta": 79.085, "epsilon": -121.899, "zeta": -89.827, "epsilon_zeta": -32.071, "bb_type": "--", "chi": -159.341, "glyco_bond": "anti", "C5prime_xyz": [ -1.476, 8.777, 0.475 ], "P_xyz": [ 1.095, 9.287, 0.381 ], "form": "A", "ssZp": 4.251, "Dp": 4.727, "splay_angle": 17.918, "splay_distance": 2.901, "splay_ratio": 0.156, "d22": null, "d64": null, "eta": 176.733, "theta": -141.889, "eta_prime": -173.406, "theta_prime": -140.783, "eta_base": -139.154, "theta_base": -124.940, "v0": 1.065, "v1": -23.853, "v2": 36.394, "v3": -36.749, "v4": 22.492, "amplitude": 38.065, "phase_angle": 17.036, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.900, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 219.233, 214.368, 190.166 ], "x_axis": [ -0.168, 0.977, 0.133 ], "y_axis": [ -0.906, -0.100, -0.411 ], "z_axis": [ -0.388, -0.189, 0.902 ], "quaternion": [ 0.639, -0.087, -0.204, 0.736 ] } }, { "index": 1650, "index_chain": 1650, "chain_name": "2", "nt_resnum": 1822, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1822", "linked_nts": [ "///2/1821", "///2/1823" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.073, "beta": 163.762, "gamma": 44.442, "delta": 78.426, "epsilon": -135.583, "zeta": -87.358, "epsilon_zeta": -48.226, "bb_type": "BI", "chi": -144.526, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.770, -0.446 ], "P_xyz": [ 1.057, 9.268, -0.834 ], "form": ".", "ssZp": 3.754, "Dp": 4.723, "splay_angle": 33.395, "splay_distance": 5.183, "splay_ratio": 0.292, "d22": null, "d64": null, "eta": 154.408, "theta": -127.664, "eta_prime": 164.540, "theta_prime": -142.053, "eta_base": -168.608, "theta_base": -97.005, "v0": 1.107, "v1": -24.305, "v2": 37.041, "v3": -37.376, "v4": 22.881, "amplitude": 38.732, "phase_angle": 16.996, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.467, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 218.832, 214.626, 193.028 ], "x_axis": [ -0.395, 0.783, -0.480 ], "y_axis": [ -0.845, -0.515, -0.145 ], "z_axis": [ -0.361, 0.348, 0.865 ], "quaternion": [ 0.489, -0.252, 0.061, 0.833 ] } }, { "index": 1651, "index_chain": 1651, "chain_name": "2", "nt_resnum": 1823, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1823", "linked_nts": [ "///2/1822", "///2/1824" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 80.890, "beta": -138.630, "gamma": -110.135, "delta": 82.467, "epsilon": -97.738, "zeta": -170.138, "epsilon_zeta": 72.400, "bb_type": "BII", "chi": 33.292, "glyco_bond": "syn", "C5prime_xyz": [ -5.460, 3.418, 0.278 ], "P_xyz": [ -7.658, 3.023, 1.659 ], "form": ".", "ssZp": -3.304, "Dp": 4.565, "splay_angle": 143.982, "splay_distance": 15.588, "splay_ratio": 0.951, "d22": null, "d64": null, "eta": -177.950, "theta": 127.127, "eta_prime": -178.580, "theta_prime": 139.129, "eta_base": -114.745, "theta_base": 87.687, "v0": -0.636, "v1": -20.905, "v2": 33.188, "v3": -34.521, "v4": 22.202, "amplitude": 35.238, "phase_angle": 19.641, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 214.852, 217.593, 194.519 ], "x_axis": [ 0.772, 0.616, -0.159 ], "y_axis": [ 0.595, -0.611, 0.523 ], "z_axis": [ 0.225, -0.498, -0.838 ], "quaternion": [ 0.284, 0.897, 0.337, 0.018 ] } }, { "index": 1652, "index_chain": 1652, "chain_name": "2", "nt_resnum": 1824, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1824", "linked_nts": [ "///2/1823", "///2/1825" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 168.919, "beta": -130.243, "gamma": 38.342, "delta": 80.401, "epsilon": -140.121, "zeta": -112.324, "epsilon_zeta": -27.796, "bb_type": "--", "chi": -64.721, "glyco_bond": "--", "C5prime_xyz": [ -3.192, 6.053, -3.442 ], "P_xyz": [ -1.224, 6.575, -5.094 ], "form": ".", "ssZp": -2.042, "Dp": 4.704, "splay_angle": 89.176, "splay_distance": 14.167, "splay_ratio": 0.702, "d22": null, "d64": null, "eta": 86.100, "theta": 148.176, "eta_prime": 74.364, "theta_prime": 144.248, "eta_base": 85.050, "theta_base": 147.833, "v0": 3.114, "v1": -25.186, "v2": 36.526, "v3": -35.755, "v4": 20.569, "amplitude": 37.643, "phase_angle": 13.998, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 213.797, 206.886, 205.799 ], "x_axis": [ 0.942, -0.167, -0.290 ], "y_axis": [ 0.130, 0.981, -0.145 ], "z_axis": [ 0.309, 0.099, 0.946 ], "quaternion": [ 0.984, -0.062, 0.152, -0.075 ] } }, { "index": 1653, "index_chain": 1653, "chain_name": "2", "nt_resnum": 1825, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1825", "linked_nts": [ "///2/1824", "///2/1826" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": -83.714, "beta": 69.987, "gamma": 164.976, "delta": 82.931, "epsilon": -99.586, "zeta": -85.173, "epsilon_zeta": -14.413, "bb_type": "--", "chi": -161.434, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.708, 0.598 ], "P_xyz": [ -2.312, 10.019, -1.501 ], "form": ".", "ssZp": 4.093, "Dp": 4.674, "splay_angle": 162.687, "splay_distance": 17.298, "splay_ratio": 0.989, "d22": null, "d64": null, "eta": -138.474, "theta": -115.457, "eta_prime": -167.035, "theta_prime": -101.349, "eta_base": -168.530, "theta_base": -118.076, "v0": 1.537, "v1": -23.064, "v2": 34.488, "v3": -34.584, "v4": 20.889, "amplitude": 35.917, "phase_angle": 16.218, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.154, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 212.167, 219.156, 212.690 ], "x_axis": [ 0.940, 0.158, 0.302 ], "y_axis": [ 0.321, -0.113, -0.940 ], "z_axis": [ -0.115, 0.981, -0.157 ], "quaternion": [ 0.646, -0.743, -0.161, -0.063 ] } }, { "index": 1654, "index_chain": 1654, "chain_name": "2", "nt_resnum": 1826, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1826", "linked_nts": [ "///2/1825", "///2/1827" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 104.795, "beta": 97.680, "gamma": 41.542, "delta": 80.899, "epsilon": -153.595, "zeta": -68.956, "epsilon_zeta": -84.639, "bb_type": "BI", "chi": -177.223, "glyco_bond": "anti", "C5prime_xyz": [ -1.588, 8.599, 1.504 ], "P_xyz": [ 0.888, 7.739, 1.550 ], "form": "A", "ssZp": 4.497, "Dp": 4.533, "splay_angle": 23.304, "splay_distance": 3.781, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": -139.973, "theta": -124.946, "eta_prime": -102.636, "theta_prime": -135.590, "eta_base": -60.374, "theta_base": -132.243, "v0": -0.136, "v1": -21.866, "v2": 34.293, "v3": -35.329, "v4": 22.364, "amplitude": 36.229, "phase_angle": 18.816, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 213.233, 225.513, 196.637 ], "x_axis": [ -0.348, -0.849, -0.398 ], "y_axis": [ 0.043, -0.439, 0.897 ], "z_axis": [ -0.936, 0.295, 0.189 ], "quaternion": [ -0.317, -0.475, 0.424, 0.703 ] } }, { "index": 1655, "index_chain": 1655, "chain_name": "2", "nt_resnum": 1827, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1827", "linked_nts": [ "///2/1826", "///2/1828" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -68.944, "beta": -167.780, "gamma": 44.157, "delta": 80.842, "epsilon": -137.553, "zeta": -104.200, "epsilon_zeta": -33.353, "bb_type": "BI", "chi": -155.216, "glyco_bond": "anti", "C5prime_xyz": [ -1.435, 8.765, 0.240 ], "P_xyz": [ 0.989, 9.450, 0.968 ], "form": ".", "ssZp": 4.220, "Dp": 4.669, "splay_angle": 27.208, "splay_distance": 4.279, "splay_ratio": 0.236, "d22": 4.933, "d64": 4.973, "eta": 171.259, "theta": -165.981, "eta_prime": 178.527, "theta_prime": -158.018, "eta_base": -156.680, "theta_base": -136.010, "v0": 1.473, "v1": -23.528, "v2": 35.429, "v3": -35.584, "v4": 21.504, "amplitude": 36.931, "phase_angle": 16.397, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.744, "filter_rmsd": 0.105, "frame": { "rmsd": 0.001, "origin": [ 210.436, 227.536, 195.092 ], "x_axis": [ -0.248, -0.964, 0.098 ], "y_axis": [ 0.147, 0.063, 0.987 ], "z_axis": [ -0.957, 0.260, 0.126 ], "quaternion": [ -0.485, -0.375, 0.544, 0.573 ] } }, { "index": 1656, "index_chain": 1656, "chain_name": "2", "nt_resnum": 1828, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1828", "linked_nts": [ "///2/1827", "///2/1829" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -46.374, "beta": 142.103, "gamma": 62.152, "delta": 82.206, "epsilon": 179.444, "zeta": 33.209, "epsilon_zeta": 146.236, "bb_type": "--", "chi": -157.631, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.814, 0.380 ], "P_xyz": [ 1.170, 8.879, -0.283 ], "form": ".", "ssZp": 4.205, "Dp": 4.296, "splay_angle": 24.194, "splay_distance": 4.250, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 170.922, "theta": -72.778, "eta_prime": -171.475, "theta_prime": -113.402, "eta_base": -143.088, "theta_base": -94.197, "v0": 0.437, "v1": -21.920, "v2": 33.807, "v3": -34.532, "v4": 21.525, "amplitude": 35.536, "phase_angle": 17.946, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.174, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 206.367, 228.806, 194.719 ], "x_axis": [ -0.149, -0.874, 0.462 ], "y_axis": [ 0.192, 0.433, 0.881 ], "z_axis": [ -0.970, 0.220, 0.103 ], "quaternion": [ 0.589, 0.281, -0.608, -0.452 ] } }, { "index": 1657, "index_chain": 1657, "chain_name": "2", "nt_resnum": 1829, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1829", "linked_nts": [ "///2/1828", "///2/1830" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate", "alpha": 172.212, "beta": 96.115, "gamma": 147.111, "delta": 84.015, "epsilon": -139.161, "zeta": -67.309, "epsilon_zeta": -71.852, "bb_type": "BI", "chi": -174.974, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.519, 1.424 ], "P_xyz": [ -0.929, 10.263, -0.484 ], "form": ".", "ssZp": 4.592, "Dp": 4.638, "splay_angle": 30.114, "splay_distance": 4.677, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": 135.416, "theta": -178.619, "eta_prime": 161.189, "theta_prime": -158.053, "eta_base": -149.213, "theta_base": -116.538, "v0": 3.165, "v1": -23.666, "v2": 33.951, "v3": -33.098, "v4": 18.927, "amplitude": 34.924, "phase_angle": 13.556, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 202.913, 226.514, 195.658 ], "x_axis": [ 0.475, -0.485, 0.734 ], "y_axis": [ 0.125, 0.863, 0.490 ], "z_axis": [ -0.871, -0.141, 0.470 ], "quaternion": [ 0.838, 0.188, -0.479, -0.182 ] } }, { "index": 1658, "index_chain": 1658, "chain_name": "2", "nt_resnum": 1830, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1830", "linked_nts": [ "///2/1829", "///2/1831" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -58.697, "beta": 173.880, "gamma": 74.786, "delta": 148.423, "epsilon": -79.697, "zeta": 128.913, "epsilon_zeta": 151.389, "bb_type": "BII", "chi": -127.865, "glyco_bond": "anti", "C5prime_xyz": [ -1.935, 8.625, -0.781 ], "P_xyz": [ 0.617, 9.127, -0.394 ], "form": ".", "ssZp": 0.405, "Dp": 0.413, "splay_angle": 38.402, "splay_distance": 6.239, "splay_ratio": 0.339, "d22": null, "d64": null, "eta": -144.772, "theta": 154.811, "eta_prime": -111.999, "theta_prime": 146.831, "eta_base": -75.787, "theta_base": 174.519, "v0": -21.387, "v1": 36.095, "v2": -36.155, "v3": 24.745, "v4": -2.312, "amplitude": 37.482, "phase_angle": 164.707, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.538, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 200.590, 224.533, 199.201 ], "x_axis": [ 0.444, 0.273, 0.854 ], "y_axis": [ -0.344, 0.931, -0.119 ], "z_axis": [ -0.827, -0.241, 0.507 ], "quaternion": [ 0.849, 0.036, -0.495, 0.182 ] } }, { "index": 1659, "index_chain": 1659, "chain_name": "2", "nt_resnum": 1831, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1831", "linked_nts": [ "///2/1830", "///2/1832" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": 167.175, "beta": -137.687, "gamma": 69.807, "delta": 81.473, "epsilon": -141.816, "zeta": -69.805, "epsilon_zeta": -72.012, "bb_type": "BI", "chi": 174.759, "glyco_bond": "--", "C5prime_xyz": [ -1.463, 8.198, 1.957 ], "P_xyz": [ 0.804, 7.706, 3.188 ], "form": "A", "ssZp": 4.697, "Dp": 4.714, "splay_angle": 26.655, "splay_distance": 4.117, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 148.481, "theta": -132.138, "eta_prime": 132.480, "theta_prime": -127.669, "eta_base": 162.121, "theta_base": -99.578, "v0": 5.114, "v1": -26.778, "v2": 37.124, "v3": -35.168, "v4": 18.937, "amplitude": 37.819, "phase_angle": 11.002, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 197.798, 222.377, 194.054 ], "x_axis": [ 0.311, 0.312, 0.898 ], "y_axis": [ -0.025, 0.947, -0.320 ], "z_axis": [ -0.950, 0.077, 0.303 ], "quaternion": [ 0.800, -0.124, -0.577, 0.105 ] } }, { "index": 1660, "index_chain": 1660, "chain_name": "2", "nt_resnum": 1832, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1832", "linked_nts": [ "///2/1831", "///2/1833" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -67.144, "beta": -176.296, "gamma": 54.237, "delta": 82.797, "epsilon": -151.855, "zeta": -73.468, "epsilon_zeta": -78.387, "bb_type": "BI", "chi": -168.252, "glyco_bond": "anti", "C5prime_xyz": [ -1.419, 8.608, 1.032 ], "P_xyz": [ 1.075, 8.939, 1.778 ], "form": "A", "ssZp": 4.511, "Dp": 4.576, "splay_angle": 24.026, "splay_distance": 3.934, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 171.306, "theta": -147.157, "eta_prime": -173.762, "theta_prime": -145.798, "eta_base": -129.329, "theta_base": -131.286, "v0": 2.356, "v1": -23.620, "v2": 34.687, "v3": -34.296, "v4": 20.168, "amplitude": 35.901, "phase_angle": 14.942, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.939, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 195.053, 221.174, 196.877 ], "x_axis": [ 0.262, 0.844, 0.468 ], "y_axis": [ -0.177, 0.519, -0.836 ], "z_axis": [ -0.949, 0.136, 0.285 ], "quaternion": [ 0.719, -0.338, -0.493, 0.355 ] } }, { "index": 1661, "index_chain": 1661, "chain_name": "2", "nt_resnum": 1833, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1833", "linked_nts": [ "///2/1832", "///2/1834" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -61.173, "beta": 177.613, "gamma": 51.458, "delta": 80.269, "epsilon": -107.819, "zeta": -73.897, "epsilon_zeta": -33.923, "bb_type": "--", "chi": -158.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.567, 8.874, 0.412 ], "P_xyz": [ 0.924, 9.583, 0.808 ], "form": ".", "ssZp": 4.018, "Dp": 4.617, "splay_angle": 41.080, "splay_distance": 6.722, "splay_ratio": 0.351, "d22": null, "d64": null, "eta": -177.222, "theta": -117.711, "eta_prime": -170.538, "theta_prime": -115.263, "eta_base": -150.237, "theta_base": -101.667, "v0": -2.015, "v1": -20.550, "v2": 33.939, "v3": -36.097, "v4": 24.049, "amplitude": 36.533, "phase_angle": 21.721, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.971, "filter_rmsd": 0.061, "frame": { "rmsd": 0.003, "origin": [ 192.406, 220.354, 199.670 ], "x_axis": [ 0.192, 0.981, 0.040 ], "y_axis": [ -0.328, 0.102, -0.939 ], "z_axis": [ -0.925, 0.167, 0.341 ], "quaternion": [ 0.639, -0.433, -0.377, 0.511 ] } }, { "index": 1662, "index_chain": 1662, "chain_name": "2", "nt_resnum": 1834, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1834", "linked_nts": [ "///2/1833", "///2/1835" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -70.896, "beta": -127.815, "gamma": -2.623, "delta": 145.297, "epsilon": -99.814, "zeta": -107.430, "epsilon_zeta": 7.616, "bb_type": "--", "chi": 129.949, "glyco_bond": "--", "C5prime_xyz": [ -3.414, 6.648, 3.073 ], "P_xyz": [ -5.467, 6.232, 4.651 ], "form": ".", "ssZp": -0.127, "Dp": 0.900, "splay_angle": 92.680, "splay_distance": 15.050, "splay_ratio": 0.724, "d22": null, "d64": null, "eta": 165.090, "theta": -75.380, "eta_prime": 176.227, "theta_prime": -112.330, "eta_base": -167.245, "theta_base": -140.503, "v0": -22.924, "v1": 36.251, "v2": -35.007, "v3": 22.665, "v4": -0.002, "amplitude": 36.962, "phase_angle": 161.281, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.046, "frame": { "rmsd": 0.015, "origin": [ 186.973, 224.025, 201.154 ], "x_axis": [ 0.237, -0.414, 0.879 ], "y_axis": [ -0.606, -0.770, -0.199 ], "z_axis": [ 0.760, -0.485, -0.433 ], "quaternion": [ 0.092, 0.781, -0.326, 0.524 ] } }, { "index": 1663, "index_chain": 1663, "chain_name": "2", "nt_resnum": 1835, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1835", "linked_nts": [ "///2/1834", "///2/1836" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 32.322, "beta": 140.923, "gamma": -179.456, "delta": 147.312, "epsilon": -111.212, "zeta": -54.181, "epsilon_zeta": -57.030, "bb_type": "--", "chi": -150.815, "glyco_bond": "anti", "C5prime_xyz": [ -1.787, 8.645, 0.513 ], "P_xyz": [ -0.599, 10.740, -0.540 ], "form": ".", "ssZp": 1.184, "Dp": 1.235, "splay_angle": 119.533, "splay_distance": 17.863, "splay_ratio": 0.864, "d22": null, "d64": null, "eta": 39.453, "theta": -69.513, "eta_prime": 71.780, "theta_prime": -66.652, "eta_base": 63.735, "theta_base": -56.945, "v0": -19.858, "v1": 34.509, "v2": -35.173, "v3": 24.600, "v4": -3.160, "amplitude": 36.220, "phase_angle": 166.191, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 175.154, 230.008, 194.012 ], "x_axis": [ -0.742, -0.376, 0.555 ], "y_axis": [ 0.496, -0.865, 0.078 ], "z_axis": [ 0.450, 0.333, 0.828 ], "quaternion": [ -0.235, 0.271, 0.111, 0.927 ] } }, { "index": 1664, "index_chain": 1664, "chain_name": "2", "nt_resnum": 1836, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1836", "linked_nts": [ "///2/1835", "///2/1837" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate,splayed-apart", "alpha": 101.920, "beta": 139.627, "gamma": -62.538, "delta": 149.569, "epsilon": -140.890, "zeta": 120.542, "epsilon_zeta": 98.569, "bb_type": "--", "chi": -98.276, "glyco_bond": "anti", "C5prime_xyz": [ -1.997, 7.965, -2.173 ], "P_xyz": [ -1.146, 10.447, -2.153 ], "form": ".", "ssZp": 1.415, "Dp": 1.696, "splay_angle": 36.372, "splay_distance": 6.041, "splay_ratio": 0.339, "d22": null, "d64": null, "eta": -173.452, "theta": 81.962, "eta_prime": -130.590, "theta_prime": 82.312, "eta_base": -117.993, "theta_base": 95.605, "v0": -17.039, "v1": 32.720, "v2": -35.062, "v3": 26.111, "v4": -5.901, "amplitude": 35.533, "phase_angle": 170.660, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 189.295, 220.783, 199.846 ], "x_axis": [ -0.276, -0.913, -0.300 ], "y_axis": [ -0.341, 0.384, -0.858 ], "z_axis": [ 0.899, -0.134, -0.417 ], "quaternion": [ 0.416, -0.435, 0.721, -0.344 ] } }, { "index": 1665, "index_chain": 1665, "chain_name": "2", "nt_resnum": 1837, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1837", "linked_nts": [ "///2/1836", "///2/1838" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,splayed-apart", "alpha": -82.046, "beta": 131.940, "gamma": 50.283, "delta": 85.251, "epsilon": -80.204, "zeta": 93.002, "epsilon_zeta": 186.794, "bb_type": "--", "chi": -96.918, "glyco_bond": "anti", "C5prime_xyz": [ -2.179, 7.584, -2.776 ], "P_xyz": [ -0.185, 6.477, -4.081 ], "form": ".", "ssZp": -0.577, "Dp": 4.540, "splay_angle": 142.210, "splay_distance": 18.408, "splay_ratio": 0.946, "d22": null, "d64": null, "eta": 177.949, "theta": 107.522, "eta_prime": 179.244, "theta_prime": 67.225, "eta_base": 177.535, "theta_base": -9.547, "v0": 2.919, "v1": -23.243, "v2": 33.517, "v3": -32.767, "v4": 18.883, "amplitude": 34.525, "phase_angle": 13.879, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.567, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 187.483, 226.490, 200.647 ], "x_axis": [ 0.972, -0.076, 0.223 ], "y_axis": [ 0.203, 0.752, -0.628 ], "z_axis": [ -0.120, 0.655, 0.746 ], "quaternion": [ 0.931, -0.344, -0.092, -0.075 ] } }, { "index": 1666, "index_chain": 1666, "chain_name": "2", "nt_resnum": 1838, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1838", "linked_nts": [ "///2/1837", "///2/1839" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 49.915, "beta": 162.466, "gamma": 64.937, "delta": 146.537, "epsilon": -106.636, "zeta": -123.606, "epsilon_zeta": 16.971, "bb_type": "--", "chi": -120.922, "glyco_bond": "anti", "C5prime_xyz": [ -1.910, 8.519, -1.177 ], "P_xyz": [ 0.677, 8.934, -1.025 ], "form": ".", "ssZp": 1.066, "Dp": 1.117, "splay_angle": 102.619, "splay_distance": 16.471, "splay_ratio": 0.781, "d22": 11.785, "d64": 14.890, "eta": -8.162, "theta": -65.009, "eta_prime": 23.123, "theta_prime": -110.679, "eta_base": 84.680, "theta_base": -135.348, "v0": -20.868, "v1": 34.999, "v2": -34.995, "v3": 23.848, "v4": -2.074, "amplitude": 36.322, "phase_angle": 164.463, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 191.005, 235.643, 185.069 ], "x_axis": [ 0.895, 0.109, 0.433 ], "y_axis": [ -0.385, -0.305, 0.871 ], "z_axis": [ 0.227, -0.946, -0.231 ], "quaternion": [ 0.583, 0.779, -0.088, 0.212 ] } }, { "index": 1667, "index_chain": 1667, "chain_name": "2", "nt_resnum": 1839, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1839", "linked_nts": [ "///2/1838", "///2/1840" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,splayed-apart", "alpha": 36.189, "beta": 107.466, "gamma": 169.635, "delta": 81.956, "epsilon": -167.277, "zeta": -79.944, "epsilon_zeta": -87.333, "bb_type": "BI", "chi": -166.946, "glyco_bond": "anti", "C5prime_xyz": [ -1.474, 8.677, 0.935 ], "P_xyz": [ -1.723, 10.798, -0.589 ], "form": "A", "ssZp": 4.400, "Dp": 4.438, "splay_angle": 27.144, "splay_distance": 4.155, "splay_ratio": 0.235, "d22": 4.356, "d64": 4.170, "eta": -12.998, "theta": 166.070, "eta_prime": 10.766, "theta_prime": -175.541, "eta_base": 41.329, "theta_base": -125.243, "v0": 1.212, "v1": -22.705, "v2": 34.320, "v3": -34.607, "v4": 21.076, "amplitude": 35.839, "phase_angle": 16.738, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 181.284, 222.447, 183.445 ], "x_axis": [ -0.424, 0.414, -0.806 ], "y_axis": [ 0.125, 0.908, 0.400 ], "z_axis": [ 0.897, 0.069, -0.436 ], "quaternion": [ 0.512, 0.162, 0.832, 0.141 ] } }, { "index": 1668, "index_chain": 1668, "chain_name": "2", "nt_resnum": 1840, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1840", "linked_nts": [ "///2/1839", "///2/1841" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem", "alpha": -176.026, "beta": -141.499, "gamma": 135.887, "delta": 81.455, "epsilon": -134.567, "zeta": -71.687, "epsilon_zeta": -62.880, "bb_type": "BI", "chi": -174.246, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.480, 1.388 ], "P_xyz": [ 1.135, 8.881, 0.518 ], "form": "A", "ssZp": 4.679, "Dp": 4.720, "splay_angle": 27.411, "splay_distance": 4.405, "splay_ratio": 0.242, "d22": 4.410, "d64": 4.795, "eta": 157.033, "theta": -132.725, "eta_prime": 178.505, "theta_prime": -137.212, "eta_base": -120.635, "theta_base": -113.436, "v0": 4.196, "v1": -25.618, "v2": 36.161, "v3": -34.730, "v4": 19.255, "amplitude": 37.004, "phase_angle": 12.254, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 183.692, 223.127, 180.127 ], "x_axis": [ -0.223, 0.940, -0.260 ], "y_axis": [ 0.417, 0.333, 0.846 ], "z_axis": [ 0.881, 0.080, -0.466 ], "quaternion": [ 0.401, 0.477, 0.711, 0.326 ] } }, { "index": 1669, "index_chain": 1669, "chain_name": "2", "nt_resnum": 1841, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1841", "linked_nts": [ "///2/1840", "///2/1842" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem", "alpha": -64.282, "beta": 171.497, "gamma": 58.726, "delta": 78.700, "epsilon": -156.723, "zeta": -68.689, "epsilon_zeta": -88.034, "bb_type": "BI", "chi": -166.097, "glyco_bond": "anti", "C5prime_xyz": [ -1.617, 8.802, 0.842 ], "P_xyz": [ 0.908, 9.459, 1.046 ], "form": "A", "ssZp": 4.512, "Dp": 4.565, "splay_angle": 24.512, "splay_distance": 4.022, "splay_ratio": 0.218, "d22": 4.599, "d64": 4.994, "eta": 166.064, "theta": -149.353, "eta_prime": -174.799, "theta_prime": -149.786, "eta_base": -128.089, "theta_base": -130.095, "v0": -0.580, "v1": -22.873, "v2": 36.244, "v3": -37.556, "v4": 24.033, "amplitude": 38.428, "phase_angle": 19.407, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.860, "filter_rmsd": 0.061, "frame": { "rmsd": 0.003, "origin": [ 185.914, 224.658, 176.646 ], "x_axis": [ 0.001, 0.937, 0.350 ], "y_axis": [ 0.468, -0.310, 0.828 ], "z_axis": [ 0.884, 0.163, -0.439 ], "quaternion": [ 0.251, 0.661, 0.531, 0.466 ] } }, { "index": 1670, "index_chain": 1670, "chain_name": "2", "nt_resnum": 1842, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1842", "linked_nts": [ "///2/1841", "///2/1843" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper,phosphate", "alpha": -67.454, "beta": 179.179, "gamma": 56.736, "delta": 77.982, "epsilon": -151.230, "zeta": -72.401, "epsilon_zeta": -78.829, "bb_type": "BI", "chi": -162.366, "glyco_bond": "anti", "C5prime_xyz": [ -1.613, 8.863, 0.622 ], "P_xyz": [ 0.884, 9.608, 0.921 ], "form": "A", "ssZp": 4.472, "Dp": 4.597, "splay_angle": 19.013, "splay_distance": 3.068, "splay_ratio": 0.167, "d22": null, "d64": null, "eta": 171.766, "theta": -150.302, "eta_prime": -177.230, "theta_prime": -148.992, "eta_base": -144.741, "theta_base": -127.233, "v0": -1.504, "v1": -22.079, "v2": 35.923, "v3": -37.776, "v4": 24.737, "amplitude": 38.420, "phase_angle": 20.773, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.912, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 187.920, 226.362, 173.604 ], "x_axis": [ 0.184, 0.665, 0.724 ], "y_axis": [ 0.433, -0.716, 0.548 ], "z_axis": [ 0.882, 0.213, -0.420 ], "quaternion": [ 0.110, 0.761, 0.361, 0.527 ] } }, { "index": 1671, "index_chain": 1671, "chain_name": "2", "nt_resnum": 1843, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1843", "linked_nts": [ "///2/1842", "///2/1844" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper,phosphate", "alpha": -78.769, "beta": -171.279, "gamma": 46.649, "delta": 81.913, "epsilon": -151.018, "zeta": -74.211, "epsilon_zeta": -76.807, "bb_type": "BI", "chi": -155.973, "glyco_bond": "anti", "C5prime_xyz": [ -1.236, 8.783, 0.300 ], "P_xyz": [ 1.262, 9.286, 0.924 ], "form": "A", "ssZp": 4.304, "Dp": 4.600, "splay_angle": 24.728, "splay_distance": 3.937, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 158.850, "theta": -148.990, "eta_prime": 166.725, "theta_prime": -144.573, "eta_base": -161.115, "theta_base": -117.111, "v0": 2.659, "v1": -24.150, "v2": 35.270, "v3": -34.707, "v4": 20.230, "amplitude": 36.435, "phase_angle": 14.527, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.738, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 189.775, 228.336, 172.165 ], "x_axis": [ -0.015, -0.000, 1.000 ], "y_axis": [ 0.410, -0.912, 0.006 ], "z_axis": [ 0.912, 0.410, 0.013 ], "quaternion": [ -0.147, 0.686, 0.149, 0.696 ] } }, { "index": 1672, "index_chain": 1672, "chain_name": "2", "nt_resnum": 1844, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1844", "linked_nts": [ "///2/1843", "///2/1845" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -58.854, "beta": 166.559, "gamma": 57.760, "delta": 81.255, "epsilon": -160.706, "zeta": -82.978, "epsilon_zeta": -77.728, "bb_type": "BI", "chi": -157.909, "glyco_bond": "anti", "C5prime_xyz": [ -1.438, 8.771, 0.404 ], "P_xyz": [ 1.147, 9.204, 0.309 ], "form": "A", "ssZp": 4.343, "Dp": 4.510, "splay_angle": 20.177, "splay_distance": 3.341, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 171.142, "theta": -131.932, "eta_prime": -171.895, "theta_prime": -142.977, "eta_base": -132.153, "theta_base": -124.162, "v0": 0.854, "v1": -22.791, "v2": 34.837, "v3": -35.317, "v4": 21.729, "amplitude": 36.488, "phase_angle": 17.303, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.928, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 192.725, 230.733, 173.189 ], "x_axis": [ 0.144, -0.488, 0.861 ], "y_axis": [ 0.398, -0.768, -0.502 ], "z_axis": [ 0.906, 0.415, 0.083 ], "quaternion": [ -0.339, 0.676, -0.034, 0.653 ] } }, { "index": 1673, "index_chain": 1673, "chain_name": "2", "nt_resnum": 1845, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1845", "linked_nts": [ "///2/1844", "///2/1846" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate", "alpha": 170.360, "beta": -157.078, "gamma": 151.635, "delta": 82.788, "epsilon": -123.702, "zeta": -97.868, "epsilon_zeta": -25.834, "bb_type": "--", "chi": 178.141, "glyco_bond": "anti", "C5prime_xyz": [ -1.574, 8.407, 1.775 ], "P_xyz": [ 0.683, 9.583, 1.162 ], "form": "A", "ssZp": 4.562, "Dp": 4.613, "splay_angle": 22.804, "splay_distance": 3.573, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 155.567, "theta": -161.723, "eta_prime": 169.442, "theta_prime": -160.561, "eta_base": -153.280, "theta_base": -143.857, "v0": 0.292, "v1": -21.423, "v2": 33.186, "v3": -33.994, "v4": 21.265, "amplitude": 34.930, "phase_angle": 18.181, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.082, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 194.834, 232.642, 174.940 ], "x_axis": [ -0.079, -0.926, 0.370 ], "y_axis": [ 0.335, -0.374, -0.864 ], "z_axis": [ 0.939, 0.056, 0.340 ], "quaternion": [ -0.471, 0.489, -0.302, 0.669 ] } }, { "index": 1674, "index_chain": 1674, "chain_name": "2", "nt_resnum": 1846, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1846", "linked_nts": [ "///2/1845", "///2/1847" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop", "alpha": -56.847, "beta": 163.845, "gamma": 40.118, "delta": 81.090, "epsilon": -135.025, "zeta": -95.594, "epsilon_zeta": -39.431, "bb_type": "BI", "chi": -165.497, "glyco_bond": "anti", "C5prime_xyz": [ -1.237, 8.704, 0.860 ], "P_xyz": [ 1.319, 8.930, 1.384 ], "form": "A", "ssZp": 4.520, "Dp": 4.710, "splay_angle": 21.624, "splay_distance": 3.418, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 161.584, "theta": -156.962, "eta_prime": 168.798, "theta_prime": -154.580, "eta_base": -165.699, "theta_base": -151.002, "v0": 3.043, "v1": -24.977, "v2": 36.205, "v3": -35.452, "v4": 20.430, "amplitude": 37.320, "phase_angle": 14.039, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.310, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 197.107, 234.087, 177.287 ], "x_axis": [ -0.080, -0.975, -0.205 ], "y_axis": [ 0.376, 0.161, -0.913 ], "z_axis": [ 0.923, -0.151, 0.353 ], "quaternion": [ 0.599, -0.318, 0.471, -0.564 ] } }, { "index": 1675, "index_chain": 1675, "chain_name": "2", "nt_resnum": 1847, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1847", "linked_nts": [ "///2/1846", "///2/1848" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -65.726, "beta": 154.032, "gamma": 61.260, "delta": 82.069, "epsilon": -156.638, "zeta": -78.226, "epsilon_zeta": -78.411, "bb_type": "BI", "chi": -164.114, "glyco_bond": "anti", "C5prime_xyz": [ -1.536, 8.769, 0.765 ], "P_xyz": [ 1.053, 9.128, 0.566 ], "form": ".", "ssZp": 4.411, "Dp": 4.511, "splay_angle": 32.209, "splay_distance": 4.988, "splay_ratio": 0.278, "d22": null, "d64": null, "eta": 161.921, "theta": -150.215, "eta_prime": 172.663, "theta_prime": -151.739, "eta_base": -172.802, "theta_base": -130.870, "v0": 0.366, "v1": -22.210, "v2": 34.309, "v3": -35.041, "v4": 21.889, "amplitude": 36.079, "phase_angle": 18.023, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.488, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 199.145, 234.498, 180.001 ], "x_axis": [ -0.157, -0.807, -0.569 ], "y_axis": [ 0.523, 0.421, -0.742 ], "z_axis": [ 0.838, -0.414, 0.356 ], "quaternion": [ 0.636, -0.129, 0.553, -0.523 ] } }, { "index": 1676, "index_chain": 1676, "chain_name": "2", "nt_resnum": 1848, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1848", "linked_nts": [ "///2/1847", "///2/1849" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -56.305, "beta": 160.946, "gamma": 70.172, "delta": 81.868, "epsilon": -113.189, "zeta": -65.817, "epsilon_zeta": -47.371, "bb_type": "--", "chi": -162.185, "glyco_bond": "anti", "C5prime_xyz": [ -1.330, 8.678, 0.669 ], "P_xyz": [ 1.226, 8.986, 0.151 ], "form": ".", "ssZp": 4.296, "Dp": 4.747, "splay_angle": 69.535, "splay_distance": 11.973, "splay_ratio": 0.577, "d22": null, "d64": null, "eta": -167.423, "theta": -110.131, "eta_prime": -156.010, "theta_prime": -138.243, "eta_base": -125.313, "theta_base": -175.021, "v0": 3.291, "v1": -24.874, "v2": 35.857, "v3": -34.913, "v4": 19.964, "amplitude": 36.892, "phase_angle": 13.607, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.501, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 202.384, 231.886, 182.751 ], "x_axis": [ 0.420, -0.579, -0.699 ], "y_axis": [ 0.443, 0.803, -0.399 ], "z_axis": [ 0.792, -0.142, 0.593 ], "quaternion": [ 0.839, -0.077, 0.444, -0.305 ] } }, { "index": 1677, "index_chain": 1677, "chain_name": "2", "nt_resnum": 1849, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1849", "linked_nts": [ "///2/1848", "///2/1850" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop", "alpha": -59.797, "beta": -156.652, "gamma": -110.186, "delta": 83.694, "epsilon": -137.758, "zeta": -68.748, "epsilon_zeta": -69.010, "bb_type": "BI", "chi": -171.841, "glyco_bond": "anti", "C5prime_xyz": [ -1.738, 8.713, 1.184 ], "P_xyz": [ -1.613, 11.323, 0.991 ], "form": ".", "ssZp": 4.400, "Dp": 4.487, "splay_angle": 29.022, "splay_distance": 4.494, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 27.343, "theta": -179.164, "eta_prime": 34.912, "theta_prime": -160.582, "eta_base": 21.428, "theta_base": -87.951, "v0": -2.651, "v1": -18.478, "v2": 31.233, "v3": -33.658, "v4": 22.916, "amplitude": 33.923, "phase_angle": 22.972, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 206.382, 233.634, 193.900 ], "x_axis": [ -0.594, 0.685, 0.421 ], "y_axis": [ 0.146, 0.607, -0.781 ], "z_axis": [ -0.791, -0.403, -0.461 ], "quaternion": [ -0.371, 0.255, 0.816, -0.363 ] } }, { "index": 1678, "index_chain": 1678, "chain_name": "2", "nt_resnum": 1850, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1850", "linked_nts": [ "///2/1849", "///2/1851" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,ribose-zipper", "alpha": -63.486, "beta": 165.025, "gamma": 52.649, "delta": 87.783, "epsilon": -101.594, "zeta": -99.390, "epsilon_zeta": -2.204, "bb_type": "--", "chi": -153.481, "glyco_bond": "anti", "C5prime_xyz": [ -1.099, 8.640, 0.234 ], "P_xyz": [ 1.532, 8.623, 0.309 ], "form": ".", "ssZp": 3.744, "Dp": 4.625, "splay_angle": 25.269, "splay_distance": 4.177, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 174.124, "theta": -144.579, "eta_prime": -165.207, "theta_prime": -149.111, "eta_base": -91.118, "theta_base": -150.007, "v0": 4.795, "v1": -23.521, "v2": 32.236, "v3": -30.386, "v4": 16.202, "amplitude": 32.778, "phase_angle": 10.435, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.822, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 202.397, 235.125, 192.451 ], "x_axis": [ -0.163, 0.862, -0.479 ], "y_axis": [ 0.508, -0.343, -0.790 ], "z_axis": [ -0.846, -0.372, -0.382 ], "quaternion": [ -0.167, 0.625, 0.548, -0.530 ] } }, { "index": 1679, "index_chain": 1679, "chain_name": "2", "nt_resnum": 1851, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1851", "linked_nts": [ "///2/1850", "///2/1852" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate", "alpha": -88.104, "beta": 105.414, "gamma": 101.152, "delta": 81.355, "epsilon": -105.689, "zeta": -54.080, "epsilon_zeta": -51.609, "bb_type": "--", "chi": -168.602, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.636, 1.020 ], "P_xyz": [ 0.143, 9.080, -1.015 ], "form": ".", "ssZp": 4.431, "Dp": 4.730, "splay_angle": 79.378, "splay_distance": 12.380, "splay_ratio": 0.639, "d22": null, "d64": null, "eta": 160.003, "theta": -59.137, "eta_prime": 171.073, "theta_prime": -51.046, "eta_base": -178.801, "theta_base": -37.290, "v0": 2.010, "v1": -24.097, "v2": 35.748, "v3": -35.562, "v4": 21.191, "amplitude": 37.109, "phase_angle": 15.565, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 199.184, 232.480, 192.087 ], "x_axis": [ -0.026, 0.847, -0.531 ], "y_axis": [ 0.434, -0.469, -0.769 ], "z_axis": [ -0.901, -0.251, -0.355 ], "quaternion": [ -0.193, 0.670, 0.478, -0.534 ] } }, { "index": 1680, "index_chain": 1680, "chain_name": "2", "nt_resnum": 1852, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1852", "linked_nts": [ "///2/1851", "///2/1853" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": 125.078, "beta": -96.731, "gamma": -147.742, "delta": 75.710, "epsilon": -117.602, "zeta": -78.463, "epsilon_zeta": -39.140, "bb_type": "--", "chi": -134.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.951, 8.802, -1.021 ], "P_xyz": [ -2.999, 9.016, -3.417 ], "form": ".", "ssZp": 2.880, "Dp": 4.735, "splay_angle": 39.363, "splay_distance": 6.502, "splay_ratio": 0.337, "d22": 3.602, "d64": 3.224, "eta": -153.964, "theta": -167.465, "eta_prime": -110.574, "theta_prime": -160.047, "eta_base": -56.905, "theta_base": -131.293, "v0": -3.650, "v1": -21.362, "v2": 36.760, "v3": -39.937, "v4": 27.488, "amplitude": 40.153, "phase_angle": 23.721, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.010, "origin": [ 203.089, 232.316, 180.339 ], "x_axis": [ -0.427, -0.046, -0.903 ], "y_axis": [ -0.801, -0.443, 0.402 ], "z_axis": [ -0.419, 0.895, 0.152 ], "quaternion": [ 0.265, -0.465, 0.456, 0.711 ] } }, { "index": 1681, "index_chain": 1681, "chain_name": "2", "nt_resnum": 1853, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1853", "linked_nts": [ "///2/1852", "///2/1854" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop", "alpha": -105.223, "beta": -173.697, "gamma": 74.219, "delta": 79.423, "epsilon": -157.174, "zeta": -67.509, "epsilon_zeta": -89.665, "bb_type": "BI", "chi": -156.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.837, 0.306 ], "P_xyz": [ 1.230, 9.351, 0.069 ], "form": "A", "ssZp": 4.358, "Dp": 4.583, "splay_angle": 21.695, "splay_distance": 3.469, "splay_ratio": 0.190, "d22": 4.071, "d64": 4.165, "eta": 144.972, "theta": -147.804, "eta_prime": 164.344, "theta_prime": -148.729, "eta_base": -157.177, "theta_base": -122.539, "v0": 1.180, "v1": -24.142, "v2": 36.630, "v3": -36.896, "v4": 22.505, "amplitude": 38.267, "phase_angle": 16.820, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.010, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 197.600, 233.925, 177.249 ], "x_axis": [ 0.174, -0.972, -0.156 ], "y_axis": [ -0.291, -0.202, 0.935 ], "z_axis": [ -0.941, -0.118, -0.318 ], "quaternion": [ 0.404, 0.651, -0.485, -0.421 ] } }, { "index": 1682, "index_chain": 1682, "chain_name": "2", "nt_resnum": 1854, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1854", "linked_nts": [ "///2/1853", "///2/1855" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -68.836, "beta": 169.759, "gamma": 62.686, "delta": 79.996, "epsilon": -152.698, "zeta": -73.571, "epsilon_zeta": -79.128, "bb_type": "BI", "chi": -160.978, "glyco_bond": "anti", "C5prime_xyz": [ -1.459, 8.770, 0.563 ], "P_xyz": [ 1.115, 9.288, 0.441 ], "form": "A", "ssZp": 4.436, "Dp": 4.595, "splay_angle": 26.939, "splay_distance": 4.381, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 169.126, "theta": -149.675, "eta_prime": -175.113, "theta_prime": -150.360, "eta_base": -132.644, "theta_base": -136.219, "v0": 0.858, "v1": -23.376, "v2": 35.756, "v3": -36.205, "v4": 22.283, "amplitude": 37.448, "phase_angle": 17.290, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.813, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 195.235, 232.742, 175.004 ], "x_axis": [ 0.056, -0.928, 0.369 ], "y_axis": [ -0.430, 0.311, 0.848 ], "z_axis": [ -0.901, -0.206, -0.381 ], "quaternion": [ -0.497, -0.531, 0.639, 0.251 ] } }, { "index": 1683, "index_chain": 1683, "chain_name": "2", "nt_resnum": 1855, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1855", "linked_nts": [ "///2/1854", "///2/1856" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -66.233, "beta": -176.281, "gamma": 49.139, "delta": 80.861, "epsilon": -146.584, "zeta": -72.980, "epsilon_zeta": -73.604, "bb_type": "BI", "chi": -162.729, "glyco_bond": "anti", "C5prime_xyz": [ -1.603, 8.823, 0.675 ], "P_xyz": [ 0.809, 9.507, 1.440 ], "form": "A", "ssZp": 4.398, "Dp": 4.556, "splay_angle": 22.278, "splay_distance": 3.583, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 170.993, "theta": -145.392, "eta_prime": 178.627, "theta_prime": -141.719, "eta_base": -157.056, "theta_base": -104.087, "v0": -0.939, "v1": -21.282, "v2": 34.106, "v3": -35.618, "v4": 23.042, "amplitude": 36.307, "phase_angle": 20.054, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 192.580, 231.120, 171.919 ], "x_axis": [ 0.189, -0.589, 0.786 ], "y_axis": [ -0.358, 0.704, 0.613 ], "z_axis": [ -0.914, -0.398, -0.078 ], "quaternion": [ 0.674, 0.375, -0.631, -0.085 ] } }, { "index": 1684, "index_chain": 1684, "chain_name": "2", "nt_resnum": 1856, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1856", "linked_nts": [ "///2/1855", "///2/1857" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,phosphate", "alpha": -62.130, "beta": 169.228, "gamma": 53.257, "delta": 79.837, "epsilon": -140.164, "zeta": -76.953, "epsilon_zeta": -63.211, "bb_type": "BI", "chi": -155.327, "glyco_bond": "anti", "C5prime_xyz": [ -1.392, 8.842, 0.223 ], "P_xyz": [ 1.183, 9.327, 0.167 ], "form": "A", "ssZp": 4.244, "Dp": 4.661, "splay_angle": 23.653, "splay_distance": 3.811, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 167.691, "theta": -143.298, "eta_prime": -177.824, "theta_prime": -142.836, "eta_base": -128.569, "theta_base": -115.577, "v0": 0.638, "v1": -23.256, "v2": 35.748, "v3": -36.375, "v4": 22.539, "amplitude": 37.515, "phase_angle": 17.656, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.982, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 190.260, 228.424, 172.361 ], "x_axis": [ -0.037, -0.011, 0.999 ], "y_axis": [ -0.506, 0.862, -0.009 ], "z_axis": [ -0.862, -0.506, -0.037 ], "quaternion": [ 0.669, 0.186, -0.696, 0.185 ] } }, { "index": 1685, "index_chain": 1685, "chain_name": "2", "nt_resnum": 1857, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1857", "linked_nts": [ "///2/1856", "///2/1858" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,phosphate", "alpha": -67.125, "beta": 173.111, "gamma": 47.786, "delta": 81.021, "epsilon": -168.368, "zeta": -81.215, "epsilon_zeta": -87.153, "bb_type": "BI", "chi": -167.865, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.725, 0.984 ], "P_xyz": [ 1.029, 9.172, 1.643 ], "form": "A", "ssZp": 4.424, "Dp": 4.450, "splay_angle": 21.990, "splay_distance": 3.726, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 156.710, "theta": -136.111, "eta_prime": 171.304, "theta_prime": -142.601, "eta_base": -145.149, "theta_base": -124.363, "v0": 0.864, "v1": -22.865, "v2": 34.931, "v3": -35.404, "v4": 21.796, "amplitude": 36.585, "phase_angle": 17.293, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 187.582, 226.065, 173.697 ], "x_axis": [ 0.217, 0.695, 0.686 ], "y_axis": [ -0.391, 0.706, -0.591 ], "z_axis": [ -0.895, -0.140, 0.425 ], "quaternion": [ 0.766, -0.147, -0.516, 0.354 ] } }, { "index": 1686, "index_chain": 1686, "chain_name": "2", "nt_resnum": 1858, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1858", "linked_nts": [ "///2/1857", "///2/1859" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": 167.008, "beta": -151.822, "gamma": 162.814, "delta": 82.936, "epsilon": -149.156, "zeta": -70.110, "epsilon_zeta": -79.046, "bb_type": "BI", "chi": 175.110, "glyco_bond": "anti", "C5prime_xyz": [ -1.716, 8.397, 1.906 ], "P_xyz": [ 0.412, 9.783, 1.258 ], "form": "A", "ssZp": 4.375, "Dp": 4.507, "splay_angle": 23.080, "splay_distance": 3.685, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 164.359, "theta": -156.770, "eta_prime": -178.498, "theta_prime": -156.738, "eta_base": -140.494, "theta_base": -138.867, "v0": -0.106, "v1": -21.077, "v2": 32.979, "v3": -34.002, "v4": 21.506, "amplitude": 34.836, "phase_angle": 18.792, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.466, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 186.004, 224.416, 176.643 ], "x_axis": [ 0.065, 0.953, 0.295 ], "y_axis": [ -0.475, 0.290, -0.831 ], "z_axis": [ -0.878, -0.086, 0.471 ], "quaternion": [ 0.676, -0.276, -0.434, 0.528 ] } }, { "index": 1687, "index_chain": 1687, "chain_name": "2", "nt_resnum": 1859, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1859", "linked_nts": [ "///2/1858", "///2/1860" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -77.548, "beta": -161.299, "gamma": 46.876, "delta": 85.379, "epsilon": -145.030, "zeta": -109.147, "epsilon_zeta": -35.883, "bb_type": "BI", "chi": -153.097, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.728, 0.182 ], "P_xyz": [ 1.059, 9.267, 1.156 ], "form": ".", "ssZp": 4.102, "Dp": 4.517, "splay_angle": 20.884, "splay_distance": 3.333, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 169.595, "theta": -164.462, "eta_prime": 177.883, "theta_prime": -150.756, "eta_base": -156.111, "theta_base": -132.131, "v0": 1.692, "v1": -21.723, "v2": 32.345, "v3": -32.328, "v4": 19.330, "amplitude": 33.622, "phase_angle": 15.839, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.635, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 184.597, 223.333, 179.872 ], "x_axis": [ -0.132, 0.953, -0.274 ], "y_axis": [ -0.473, -0.303, -0.827 ], "z_axis": [ -0.871, 0.020, 0.491 ], "quaternion": [ 0.514, -0.412, -0.291, 0.694 ] } }, { "index": 1688, "index_chain": 1688, "chain_name": "2", "nt_resnum": 1860, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1860", "linked_nts": [ "///2/1859", "///2/1861" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix-end,stem-end,phosphate", "alpha": -26.634, "beta": 140.418, "gamma": 58.368, "delta": 147.954, "epsilon": -99.345, "zeta": 163.785, "epsilon_zeta": 96.871, "bb_type": "BII", "chi": -122.043, "glyco_bond": "anti", "C5prime_xyz": [ -1.887, 8.551, -1.081 ], "P_xyz": [ 0.734, 8.573, -0.905 ], "form": ".", "ssZp": 0.854, "Dp": 0.889, "splay_angle": 70.906, "splay_distance": 10.674, "splay_ratio": 0.587, "d22": null, "d64": null, "eta": -158.266, "theta": 179.445, "eta_prime": -129.011, "theta_prime": 132.204, "eta_base": -119.468, "theta_base": 73.307, "v0": -20.858, "v1": 35.523, "v2": -35.832, "v3": 24.706, "v4": -2.614, "amplitude": 37.055, "phase_angle": 165.237, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.019, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 181.996, 223.055, 181.937 ], "x_axis": [ -0.233, 0.761, -0.605 ], "y_axis": [ -0.563, -0.613, -0.554 ], "z_axis": [ -0.793, 0.211, 0.572 ], "quaternion": [ 0.426, -0.449, -0.110, 0.777 ] } }, { "index": 1689, "index_chain": 1689, "chain_name": "2", "nt_resnum": 1861, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1861", "linked_nts": [ "///2/1860", "///2/1862" ], "nt_type": "RNA", "dbn": ">", "summary": "pseudoknotted,turn,syn,~C2'-endo,isolated-canonical,non-pair-contact,phosphate,splayed-apart", "alpha": -65.425, "beta": 145.677, "gamma": -65.682, "delta": 148.087, "epsilon": -159.540, "zeta": 34.485, "epsilon_zeta": 165.975, "bb_type": "--", "chi": 51.314, "glyco_bond": "syn", "C5prime_xyz": [ -5.411, 3.834, 0.721 ], "P_xyz": [ -7.572, 2.765, -0.313 ], "form": ".", "ssZp": -1.883, "Dp": 1.970, "splay_angle": 89.347, "splay_distance": 14.885, "splay_ratio": 0.705, "d22": null, "d64": null, "eta": 93.368, "theta": -27.250, "eta_prime": 82.674, "theta_prime": -62.277, "eta_base": 56.263, "theta_base": -80.314, "v0": -21.104, "v1": 35.890, "v2": -36.111, "v3": 24.860, "v4": -2.585, "amplitude": 37.365, "phase_angle": 165.111, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 184.790, 214.026, 176.976 ], "x_axis": [ 0.965, 0.092, -0.246 ], "y_axis": [ 0.244, 0.028, 0.969 ], "z_axis": [ 0.096, -0.995, 0.005 ], "quaternion": [ 0.707, 0.695, 0.121, -0.054 ] } }, { "index": 1690, "index_chain": 1690, "chain_name": "2", "nt_resnum": 1862, "nt_name": "G", "nt_code": "G", "nt_id": "///2/1862", "linked_nts": [ "///2/1861", "///2/1863" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -112.693, "beta": -97.781, "gamma": -58.266, "delta": 149.629, "epsilon": -82.046, "zeta": -160.309, "epsilon_zeta": 78.263, "bb_type": "BII", "chi": -106.403, "glyco_bond": "anti", "C5prime_xyz": [ -2.306, 8.285, -1.812 ], "P_xyz": [ -3.600, 10.328, -2.838 ], "form": ".", "ssZp": 0.427, "Dp": 0.429, "splay_angle": 41.285, "splay_distance": 6.708, "splay_ratio": 0.359, "d22": null, "d64": null, "eta": 137.976, "theta": 178.784, "eta_prime": 178.499, "theta_prime": 172.807, "eta_base": 171.586, "theta_base": 121.817, "v0": -22.538, "v1": 37.610, "v2": -37.439, "v3": 25.373, "v4": -1.994, "amplitude": 38.924, "phase_angle": 164.119, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 177.597, 225.682, 182.807 ], "x_axis": [ -0.239, -0.058, -0.969 ], "y_axis": [ 0.040, -0.998, 0.050 ], "z_axis": [ -0.970, -0.027, 0.240 ], "quaternion": [ -0.031, -0.616, 0.007, 0.787 ] } }, { "index": 1691, "index_chain": 1691, "chain_name": "2", "nt_resnum": 1863, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1863", "linked_nts": [ "///2/1862", "///2/1864" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": -46.829, "beta": 123.129, "gamma": -72.684, "delta": 145.289, "epsilon": -128.299, "zeta": -110.095, "epsilon_zeta": -18.204, "bb_type": "--", "chi": 66.088, "glyco_bond": "syn", "C5prime_xyz": [ -5.370, 4.304, 1.501 ], "P_xyz": [ -7.825, 3.707, 0.784 ], "form": ".", "ssZp": -1.574, "Dp": 1.566, "splay_angle": 83.954, "splay_distance": 12.914, "splay_ratio": 0.669, "d22": null, "d64": null, "eta": 80.020, "theta": -146.545, "eta_prime": 88.517, "theta_prime": -133.532, "eta_base": 65.768, "theta_base": -105.054, "v0": -24.641, "v1": 37.908, "v2": -35.891, "v3": 22.626, "v4": 1.074, "amplitude": 38.284, "phase_angle": 159.638, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 180.363, 226.655, 188.839 ], "x_axis": [ -0.199, 0.955, 0.221 ], "y_axis": [ -0.889, -0.271, 0.369 ], "z_axis": [ 0.412, -0.123, 0.903 ], "quaternion": [ 0.599, 0.206, 0.080, 0.770 ] } }, { "index": 1692, "index_chain": 1692, "chain_name": "2", "nt_resnum": 1864, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1864", "linked_nts": [ "///2/1863", "///2/1865" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -70.672, "beta": -172.519, "gamma": 61.497, "delta": 81.014, "epsilon": -149.407, "zeta": -70.716, "epsilon_zeta": -78.691, "bb_type": "BI", "chi": -160.089, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.740, 0.522 ], "P_xyz": [ 1.130, 9.249, 0.808 ], "form": ".", "ssZp": 4.425, "Dp": 4.622, "splay_angle": 99.457, "splay_distance": 12.655, "splay_ratio": 0.765, "d22": 10.738, "d64": 11.891, "eta": -168.666, "theta": -112.691, "eta_prime": -154.106, "theta_prime": -116.500, "eta_base": -151.808, "theta_base": -88.730, "v0": 1.708, "v1": -23.846, "v2": 35.681, "v3": -35.678, "v4": 21.419, "amplitude": 37.124, "phase_angle": 16.026, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.114, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 172.806, 221.101, 179.962 ], "x_axis": [ 0.900, -0.431, -0.069 ], "y_axis": [ 0.039, -0.079, 0.996 ], "z_axis": [ -0.435, -0.899, -0.054 ], "quaternion": [ 0.665, 0.713, -0.138, -0.177 ] } }, { "index": 1693, "index_chain": 1693, "chain_name": "2", "nt_resnum": 1865, "nt_name": "C", "nt_code": "C", "nt_id": "///2/1865", "linked_nts": [ "///2/1864", "///2/1866" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -162.457, "beta": -142.038, "gamma": -140.532, "delta": 146.741, "epsilon": -83.232, "zeta": -36.566, "epsilon_zeta": -46.666, "bb_type": "--", "chi": 4.803, "glyco_bond": "syn", "C5prime_xyz": [ -5.297, 4.656, -1.599 ], "P_xyz": [ -6.999, 2.665, -1.380 ], "form": ".", "ssZp": -0.371, "Dp": 0.587, "splay_angle": 80.805, "splay_distance": 12.857, "splay_ratio": 0.649, "d22": null, "d64": null, "eta": -47.600, "theta": -68.365, "eta_prime": -51.170, "theta_prime": -58.290, "eta_base": -53.716, "theta_base": -27.527, "v0": -22.152, "v1": 36.080, "v2": -35.494, "v3": 23.616, "v4": -1.112, "amplitude": 37.126, "phase_angle": 162.949, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.071, "frame": { "rmsd": 0.011, "origin": [ 170.620, 210.464, 186.460 ], "x_axis": [ -0.074, -0.950, -0.303 ], "y_axis": [ -0.505, 0.298, -0.810 ], "z_axis": [ 0.860, 0.093, -0.502 ], "quaternion": [ 0.425, -0.531, 0.685, -0.262 ] } }, { "index": 1694, "index_chain": 1694, "chain_name": "2", "nt_resnum": 1866, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1866", "linked_nts": [ "///2/1865", "///2/1867" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate", "alpha": -95.827, "beta": -154.149, "gamma": 47.190, "delta": 82.671, "epsilon": -175.724, "zeta": -96.618, "epsilon_zeta": -79.106, "bb_type": "BI", "chi": -161.354, "glyco_bond": "anti", "C5prime_xyz": [ -1.398, 8.710, 0.636 ], "P_xyz": [ 0.847, 9.213, 1.892 ], "form": ".", "ssZp": 4.269, "Dp": 4.345, "splay_angle": 41.098, "splay_distance": 6.335, "splay_ratio": 0.352, "d22": null, "d64": null, "eta": 126.385, "theta": 170.852, "eta_prime": 169.365, "theta_prime": -178.557, "eta_base": 179.226, "theta_base": -179.366, "v0": 1.519, "v1": -22.669, "v2": 33.959, "v3": -34.079, "v4": 20.553, "amplitude": 35.370, "phase_angle": 16.241, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.163, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 163.899, 220.877, 189.882 ], "x_axis": [ 0.868, -0.421, 0.264 ], "y_axis": [ 0.074, -0.417, -0.906 ], "z_axis": [ 0.491, 0.806, -0.331 ], "quaternion": [ 0.529, -0.809, 0.107, -0.234 ] } }, { "index": 1695, "index_chain": 1695, "chain_name": "2", "nt_resnum": 1867, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1867", "linked_nts": [ "///2/1866", "///2/1868" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop", "alpha": -52.473, "beta": 174.627, "gamma": 72.303, "delta": 146.739, "epsilon": -156.488, "zeta": -140.282, "epsilon_zeta": -16.206, "bb_type": "--", "chi": -140.246, "glyco_bond": "anti", "C5prime_xyz": [ -1.862, 8.716, -0.127 ], "P_xyz": [ 0.591, 9.153, 0.702 ], "form": ".", "ssZp": 1.784, "Dp": 1.968, "splay_angle": 40.101, "splay_distance": 6.492, "splay_ratio": 0.343, "d22": 6.819, "d64": 6.985, "eta": -168.410, "theta": 173.220, "eta_prime": -147.353, "theta_prime": 135.788, "eta_base": -161.202, "theta_base": 103.562, "v0": -21.301, "v1": 35.612, "v2": -35.535, "v3": 24.159, "v4": -2.005, "amplitude": 36.913, "phase_angle": 164.296, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.247, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 160.717, 226.343, 189.515 ], "x_axis": [ 0.811, -0.453, 0.371 ], "y_axis": [ 0.190, -0.395, -0.899 ], "z_axis": [ 0.554, 0.799, -0.234 ], "quaternion": [ 0.543, -0.781, 0.084, -0.296 ] } }, { "index": 1696, "index_chain": 1696, "chain_name": "2", "nt_resnum": 1868, "nt_name": "U", "nt_code": "U", "nt_id": "///2/1868", "linked_nts": [ "///2/1867", "///2/1869" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -96.747, "beta": 64.440, "gamma": 159.812, "delta": 145.149, "epsilon": -107.149, "zeta": -46.637, "epsilon_zeta": -60.512, "bb_type": "--", "chi": -135.326, "glyco_bond": "anti", "C5prime_xyz": [ -1.962, 8.713, -0.425 ], "P_xyz": [ -1.646, 8.938, -3.028 ], "form": ".", "ssZp": 1.131, "Dp": 1.137, "splay_angle": 124.800, "splay_distance": 18.601, "splay_ratio": 0.886, "d22": null, "d64": null, "eta": -98.835, "theta": -102.579, "eta_prime": -148.782, "theta_prime": -79.393, "eta_base": 171.656, "theta_base": -62.461, "v0": -22.612, "v1": 36.086, "v2": -35.040, "v3": 22.900, "v4": -0.374, "amplitude": 36.882, "phase_angle": 161.816, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.002, "origin": [ 155.099, 223.237, 188.546 ], "x_axis": [ 0.418, 0.577, 0.702 ], "y_axis": [ 0.103, 0.738, -0.667 ], "z_axis": [ -0.903, 0.351, 0.248 ], "quaternion": [ 0.775, -0.328, -0.518, 0.153 ] } }, { "index": 1697, "index_chain": 1697, "chain_name": "2", "nt_resnum": 1869, "nt_name": "A", "nt_code": "A", "nt_id": "///2/1869", "linked_nts": [ "///2/1868", null ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,ss-non-loop,splayed-apart", "alpha": 104.832, "beta": 153.761, "gamma": -71.053, "delta": 149.517, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -106.516, "glyco_bond": "anti", "C5prime_xyz": [ -1.963, 8.173, -1.810 ], "P_xyz": [ -1.344, 10.718, -1.975 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -18.324, "v1": 33.889, "v2": -35.642, "v3": 25.982, "v4": -5.010, "amplitude": 36.302, "phase_angle": 169.051, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 151.227, 236.183, 175.763 ], "x_axis": [ 0.890, 0.069, -0.452 ], "y_axis": [ 0.132, -0.985, 0.110 ], "z_axis": [ -0.437, -0.158, -0.885 ], "quaternion": [ 0.069, 0.970, 0.052, -0.229 ] } }, { "index": 1698, "index_chain": 1, "chain_name": "z", "nt_resnum": 120, "nt_name": "C", "nt_code": "C", "nt_id": "///z/120", "linked_nts": [ null, "///z/121" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,ss-non-loop", "alpha": null, "beta": 145.277, "gamma": 177.827, "delta": 81.017, "epsilon": -94.069, "zeta": -30.722, "epsilon_zeta": -63.347, "bb_type": "--", "chi": -106.672, "glyco_bond": "anti", "C5prime_xyz": [ -2.194, 8.040, -2.409 ], "P_xyz": [ -3.113, 8.651, -4.788 ], "form": ".", "ssZp": 0.361, "Dp": 4.581, "splay_angle": 62.440, "splay_distance": 11.349, "splay_ratio": 0.520, "d22": 6.849, "d64": 8.892, "eta": null, "theta": -124.703, "eta_prime": null, "theta_prime": -115.468, "eta_base": null, "theta_base": -115.969, "v0": -1.497, "v1": -20.863, "v2": 33.985, "v3": -35.808, "v4": 23.553, "amplitude": 36.385, "phase_angle": 20.926, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 108.838, 267.995, 196.693 ], "x_axis": [ 0.903, 0.247, -0.352 ], "y_axis": [ 0.367, -0.869, 0.332 ], "z_axis": [ -0.224, -0.429, -0.875 ], "quaternion": [ 0.199, 0.955, 0.161, -0.151 ] } }, { "index": 1699, "index_chain": 2, "chain_name": "z", "nt_resnum": 121, "nt_name": "C", "nt_code": "C", "nt_id": "///z/121", "linked_nts": [ "///z/120", "///z/122" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor", "alpha": -92.690, "beta": 118.999, "gamma": -161.143, "delta": 79.328, "epsilon": -109.480, "zeta": -21.045, "epsilon_zeta": -88.435, "bb_type": "--", "chi": -149.897, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.823, -0.094 ], "P_xyz": [ -2.066, 11.187, -0.996 ], "form": ".", "ssZp": 3.699, "Dp": 4.751, "splay_angle": 28.967, "splay_distance": 5.421, "splay_ratio": 0.261, "d22": 4.642, "d64": 6.170, "eta": -123.683, "theta": -156.330, "eta_prime": -101.946, "theta_prime": -152.292, "eta_base": -89.801, "theta_base": -137.977, "v0": 1.628, "v1": -24.396, "v2": 36.689, "v3": -36.749, "v4": 22.135, "amplitude": 38.211, "phase_angle": 16.225, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 119.226, 264.011, 194.452 ], "x_axis": [ 0.758, -0.646, 0.089 ], "y_axis": [ -0.605, -0.647, 0.464 ], "z_axis": [ -0.243, -0.406, -0.881 ], "quaternion": [ 0.240, 0.906, -0.345, -0.042 ] } }, { "index": 1700, "index_chain": 3, "chain_name": "z", "nt_resnum": 122, "nt_name": "C", "nt_code": "C", "nt_id": "///z/122", "linked_nts": [ "///z/121", "///z/123" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-donor", "alpha": -106.603, "beta": 82.057, "gamma": -166.747, "delta": 81.350, "epsilon": -109.336, "zeta": -73.541, "epsilon_zeta": -35.795, "bb_type": "--", "chi": -165.349, "glyco_bond": "anti", "C5prime_xyz": [ -1.393, 8.755, 0.840 ], "P_xyz": [ -2.596, 10.880, -0.116 ], "form": ".", "ssZp": 4.320, "Dp": 4.687, "splay_angle": 36.329, "splay_distance": 5.803, "splay_ratio": 0.312, "d22": 3.669, "d64": 3.337, "eta": -161.298, "theta": 175.974, "eta_prime": -153.229, "theta_prime": -162.809, "eta_base": -133.114, "theta_base": -106.852, "v0": 0.812, "v1": -22.875, "v2": 34.981, "v3": -35.470, "v4": 21.867, "amplitude": 36.650, "phase_angle": 17.357, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 121.729, 260.769, 190.900 ], "x_axis": [ 0.556, -0.806, 0.204 ], "y_axis": [ -0.793, -0.440, 0.420 ], "z_axis": [ -0.249, -0.395, -0.884 ], "quaternion": [ 0.240, 0.849, -0.471, -0.013 ] } }, { "index": 1701, "index_chain": 4, "chain_name": "z", "nt_resnum": 123, "nt_name": "C", "nt_code": "C", "nt_id": "///z/123", "linked_nts": [ "///z/122", "///z/124" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor", "alpha": -62.651, "beta": 171.565, "gamma": 44.403, "delta": 80.495, "epsilon": -109.937, "zeta": -28.062, "epsilon_zeta": -81.875, "bb_type": "--", "chi": -157.145, "glyco_bond": "anti", "C5prime_xyz": [ -1.220, 8.753, 0.363 ], "P_xyz": [ 1.369, 9.081, 0.612 ], "form": ".", "ssZp": 4.075, "Dp": 4.775, "splay_angle": 29.074, "splay_distance": 5.368, "splay_ratio": 0.263, "d22": 4.078, "d64": 5.704, "eta": 158.586, "theta": -97.077, "eta_prime": -179.805, "theta_prime": -99.008, "eta_base": -121.268, "theta_base": -85.716, "v0": 3.559, "v1": -25.646, "v2": 36.811, "v3": -35.765, "v4": 20.297, "amplitude": 37.831, "phase_angle": 13.336, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.267, "filter_rmsd": 0.065, "frame": { "rmsd": 0.002, "origin": [ 121.650, 255.084, 189.742 ], "x_axis": [ -0.270, -0.393, 0.879 ], "y_axis": [ -0.905, 0.416, -0.092 ], "z_axis": [ -0.330, -0.820, -0.468 ], "quaternion": [ -0.412, -0.442, 0.734, -0.311 ] } }, { "index": 1702, "index_chain": 5, "chain_name": "z", "nt_resnum": 124, "nt_name": "C", "nt_code": "C", "nt_id": "///z/124", "linked_nts": [ "///z/123", "///z/125" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,cap-donor", "alpha": -100.950, "beta": 96.000, "gamma": 176.257, "delta": 81.613, "epsilon": -160.940, "zeta": -60.438, "epsilon_zeta": -100.502, "bb_type": "BI", "chi": 178.271, "glyco_bond": "anti", "C5prime_xyz": [ -1.518, 8.483, 1.749 ], "P_xyz": [ -1.801, 10.864, 0.683 ], "form": ".", "ssZp": 4.360, "Dp": 4.475, "splay_angle": 34.231, "splay_distance": 5.057, "splay_ratio": 0.294, "d22": 3.909, "d64": 3.502, "eta": -149.568, "theta": -176.486, "eta_prime": -138.464, "theta_prime": -155.563, "eta_base": -101.120, "theta_base": -81.662, "v0": 0.620, "v1": -22.357, "v2": 34.342, "v3": -34.922, "v4": 21.650, "amplitude": 36.035, "phase_angle": 17.633, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.008, "origin": [ 120.223, 250.411, 191.964 ], "x_axis": [ -0.624, -0.166, 0.764 ], "y_axis": [ -0.707, 0.536, -0.461 ], "z_axis": [ -0.333, -0.828, -0.452 ], "quaternion": [ -0.340, -0.270, 0.808, -0.399 ] } }, { "index": 1703, "index_chain": 6, "chain_name": "z", "nt_resnum": 125, "nt_name": "C", "nt_code": "C", "nt_id": "///z/125", "linked_nts": [ "///z/124", "///z/126" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -166.784, "beta": -134.417, "gamma": 108.214, "delta": 80.983, "epsilon": -148.592, "zeta": -77.679, "epsilon_zeta": -70.913, "bb_type": "BI", "chi": -166.605, "glyco_bond": "anti", "C5prime_xyz": [ -1.255, 8.705, 0.921 ], "P_xyz": [ 1.350, 8.513, 0.669 ], "form": "A", "ssZp": 4.545, "Dp": 4.631, "splay_angle": 26.503, "splay_distance": 4.135, "splay_ratio": 0.230, "d22": 4.389, "d64": 4.680, "eta": 141.549, "theta": -139.939, "eta_prime": 175.013, "theta_prime": -144.215, "eta_base": -94.784, "theta_base": -125.318, "v0": 2.352, "v1": -24.373, "v2": 35.948, "v3": -35.557, "v4": 20.931, "amplitude": 37.226, "phase_angle": 15.057, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 115.720, 248.113, 192.097 ], "x_axis": [ -0.861, 0.479, -0.172 ], "y_axis": [ 0.341, 0.294, -0.893 ], "z_axis": [ -0.377, -0.827, -0.417 ], "quaternion": [ -0.064, 0.256, 0.802, -0.536 ] } }, { "index": 1704, "index_chain": 7, "chain_name": "z", "nt_resnum": 126, "nt_name": "C", "nt_code": "C", "nt_id": "///z/126", "linked_nts": [ "///z/125", "///z/127" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.033, "beta": 166.730, "gamma": 54.696, "delta": 80.700, "epsilon": -149.700, "zeta": -74.392, "epsilon_zeta": -75.308, "bb_type": "BI", "chi": -169.889, "glyco_bond": "anti", "C5prime_xyz": [ -1.361, 8.665, 1.112 ], "P_xyz": [ 1.221, 8.958, 1.444 ], "form": "A", "ssZp": 4.582, "Dp": 4.621, "splay_angle": 22.700, "splay_distance": 3.589, "splay_ratio": 0.199, "d22": 4.437, "d64": 4.502, "eta": 172.423, "theta": -146.197, "eta_prime": -173.690, "theta_prime": -146.143, "eta_base": -134.751, "theta_base": -124.919, "v0": 2.168, "v1": -24.339, "v2": 36.008, "v3": -35.763, "v4": 21.170, "amplitude": 37.341, "phase_angle": 15.352, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.900, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 113.299, 244.785, 191.704 ], "x_axis": [ -0.536, 0.613, -0.580 ], "y_axis": [ 0.765, 0.062, -0.642 ], "z_axis": [ -0.358, -0.787, -0.502 ], "quaternion": [ 0.077, 0.475, 0.725, -0.493 ] } }, { "index": 1705, "index_chain": 8, "chain_name": "z", "nt_resnum": 127, "nt_name": "U", "nt_code": "U", "nt_id": "///z/127", "linked_nts": [ "///z/126", "///z/128" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -62.197, "beta": 172.945, "gamma": 52.991, "delta": 80.090, "epsilon": -151.184, "zeta": -77.268, "epsilon_zeta": -73.916, "bb_type": "BI", "chi": -164.236, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.703, 0.772 ], "P_xyz": [ 1.143, 9.159, 1.074 ], "form": "A", "ssZp": 4.518, "Dp": 4.625, "splay_angle": 23.547, "splay_distance": 3.691, "splay_ratio": 0.205, "d22": 4.386, "d64": 4.597, "eta": 168.767, "theta": -151.649, "eta_prime": -178.572, "theta_prime": -150.744, "eta_base": -142.090, "theta_base": -126.656, "v0": 2.134, "v1": -24.536, "v2": 36.381, "v3": -36.140, "v4": 21.447, "amplitude": 37.742, "phase_angle": 15.435, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.985, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 110.634, 242.479, 191.026 ], "x_axis": [ -0.057, 0.583, -0.810 ], "y_axis": [ 0.913, -0.298, -0.279 ], "z_axis": [ -0.404, -0.756, -0.515 ], "quaternion": [ 0.180, 0.662, 0.565, -0.458 ] } }, { "index": 1706, "index_chain": 9, "chain_name": "z", "nt_resnum": 128, "nt_name": "C", "nt_code": "C", "nt_id": "///z/128", "linked_nts": [ "///z/127", "///z/129" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.044, "beta": 164.219, "gamma": 60.132, "delta": 80.092, "epsilon": -145.918, "zeta": -79.559, "epsilon_zeta": -66.359, "bb_type": "BI", "chi": -167.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.695, 0.989 ], "P_xyz": [ 1.221, 9.069, 0.969 ], "form": "A", "ssZp": 4.606, "Dp": 4.671, "splay_angle": 24.615, "splay_distance": 3.802, "splay_ratio": 0.214, "d22": 4.548, "d64": 4.192, "eta": 170.358, "theta": -149.356, "eta_prime": -176.708, "theta_prime": -149.138, "eta_base": -138.415, "theta_base": -127.184, "v0": 2.400, "v1": -24.908, "v2": 36.684, "v3": -36.276, "v4": 21.351, "amplitude": 37.984, "phase_angle": 15.032, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.881, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 107.863, 240.712, 189.344 ], "x_axis": [ 0.412, 0.363, -0.835 ], "y_axis": [ 0.808, -0.570, 0.151 ], "z_axis": [ -0.421, -0.737, -0.529 ], "quaternion": [ 0.280, 0.792, 0.370, -0.396 ] } }, { "index": 1707, "index_chain": 10, "chain_name": "z", "nt_resnum": 129, "nt_name": "C", "nt_code": "C", "nt_id": "///z/129", "linked_nts": [ "///z/128", "///z/130" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -74.362, "beta": -178.204, "gamma": 53.518, "delta": 81.872, "epsilon": -155.547, "zeta": -66.503, "epsilon_zeta": -89.044, "bb_type": "BI", "chi": -168.737, "glyco_bond": "anti", "C5prime_xyz": [ -1.127, 8.611, 1.049 ], "P_xyz": [ 1.428, 8.778, 1.638 ], "form": ".", "ssZp": 4.576, "Dp": 4.613, "splay_angle": 22.769, "splay_distance": 4.135, "splay_ratio": 0.217, "d22": 4.590, "d64": 5.197, "eta": 163.769, "theta": -120.663, "eta_prime": 172.392, "theta_prime": -131.759, "eta_base": -152.263, "theta_base": -120.465, "v0": 4.603, "v1": -26.029, "v2": 36.400, "v3": -34.724, "v4": 18.998, "amplitude": 37.165, "phase_angle": 11.647, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.879, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 105.407, 239.170, 186.886 ], "x_axis": [ 0.899, 0.232, -0.371 ], "y_axis": [ 0.422, -0.684, 0.595 ], "z_axis": [ -0.116, -0.691, -0.713 ], "quaternion": [ 0.354, 0.908, 0.180, -0.134 ] } }, { "index": 1708, "index_chain": 11, "chain_name": "z", "nt_resnum": 130, "nt_name": "C", "nt_code": "C", "nt_id": "///z/130", "linked_nts": [ "///z/129", "///z/131" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 166.656, "beta": -179.116, "gamma": 170.061, "delta": 82.208, "epsilon": -147.721, "zeta": -70.151, "epsilon_zeta": -77.570, "bb_type": "BI", "chi": -177.878, "glyco_bond": "anti", "C5prime_xyz": [ -1.271, 8.473, 1.588 ], "P_xyz": [ 0.357, 10.360, 0.776 ], "form": "A", "ssZp": 4.598, "Dp": 4.621, "splay_angle": 23.295, "splay_distance": 3.725, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 159.674, "theta": -170.408, "eta_prime": 175.222, "theta_prime": -165.330, "eta_base": -152.182, "theta_base": -143.385, "v0": 3.336, "v1": -24.575, "v2": 35.304, "v3": -34.333, "v4": 19.531, "amplitude": 36.298, "phase_angle": 13.434, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.712, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 104.798, 239.302, 182.798 ], "x_axis": [ 0.996, 0.030, 0.088 ], "y_axis": [ -0.032, -0.779, 0.626 ], "z_axis": [ 0.087, -0.626, -0.775 ], "quaternion": [ 0.332, 0.942, -0.001, 0.046 ] } }, { "index": 1709, "index_chain": 12, "chain_name": "z", "nt_resnum": 131, "nt_name": "G", "nt_code": "G", "nt_id": "///z/131", "linked_nts": [ "///z/130", "///z/132" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -73.199, "beta": -170.791, "gamma": 46.538, "delta": 80.887, "epsilon": -150.653, "zeta": -75.582, "epsilon_zeta": -75.071, "bb_type": "BI", "chi": -165.688, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.709, 0.864 ], "P_xyz": [ 1.006, 9.197, 1.757 ], "form": "A", "ssZp": 4.538, "Dp": 4.626, "splay_angle": 22.474, "splay_distance": 3.559, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 163.504, "theta": -151.718, "eta_prime": 173.610, "theta_prime": -148.136, "eta_base": -156.058, "theta_base": -121.761, "v0": 2.503, "v1": -24.537, "v2": 36.036, "v3": -35.605, "v4": 20.864, "amplitude": 37.283, "phase_angle": 14.861, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.815, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 105.166, 239.175, 179.094 ], "x_axis": [ 0.801, -0.257, 0.541 ], "y_axis": [ -0.545, -0.686, 0.482 ], "z_axis": [ 0.247, -0.681, -0.690 ], "quaternion": [ 0.326, 0.891, -0.225, 0.221 ] } }, { "index": 1710, "index_chain": 13, "chain_name": "z", "nt_resnum": 132, "nt_name": "G", "nt_code": "G", "nt_id": "///z/132", "linked_nts": [ "///z/131", "///z/133" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.772, "beta": 166.230, "gamma": 58.171, "delta": 80.876, "epsilon": -157.223, "zeta": -76.878, "epsilon_zeta": -80.345, "bb_type": "BI", "chi": -170.294, "glyco_bond": "anti", "C5prime_xyz": [ -1.561, 8.686, 1.117 ], "P_xyz": [ 1.008, 9.137, 1.391 ], "form": "A", "ssZp": 4.522, "Dp": 4.546, "splay_angle": 26.834, "splay_distance": 4.144, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 167.692, "theta": -154.775, "eta_prime": -177.558, "theta_prime": -154.303, "eta_base": -137.621, "theta_base": -134.972, "v0": 0.972, "v1": -23.095, "v2": 35.172, "v3": -35.615, "v4": 21.840, "amplitude": 36.808, "phase_angle": 17.142, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.935, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 107.251, 237.993, 176.463 ], "x_axis": [ 0.392, -0.502, 0.771 ], "y_axis": [ -0.871, -0.472, 0.136 ], "z_axis": [ 0.296, -0.725, -0.622 ], "quaternion": [ 0.273, 0.788, -0.435, 0.338 ] } }, { "index": 1711, "index_chain": 14, "chain_name": "z", "nt_resnum": 133, "nt_name": "G", "nt_code": "G", "nt_id": "///z/133", "linked_nts": [ "///z/132", "///z/134" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.697, "beta": -173.655, "gamma": 50.495, "delta": 85.176, "epsilon": -150.199, "zeta": -74.722, "epsilon_zeta": -75.477, "bb_type": "BI", "chi": -170.021, "glyco_bond": "anti", "C5prime_xyz": [ -1.219, 8.617, 1.177 ], "P_xyz": [ 1.176, 8.737, 2.254 ], "form": "A", "ssZp": 4.449, "Dp": 4.520, "splay_angle": 21.630, "splay_distance": 3.354, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 175.464, "theta": -145.857, "eta_prime": -178.532, "theta_prime": -141.384, "eta_base": -150.834, "theta_base": -116.291, "v0": 2.390, "v1": -22.222, "v2": 32.450, "v3": -32.002, "v4": 18.714, "amplitude": 33.540, "phase_angle": 14.648, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.860, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 109.917, 236.456, 173.688 ], "x_axis": [ -0.175, -0.451, 0.875 ], "y_axis": [ -0.973, -0.056, -0.223 ], "z_axis": [ 0.150, -0.891, -0.429 ], "quaternion": [ -0.292, -0.572, 0.622, -0.448 ] } }, { "index": 1712, "index_chain": 15, "chain_name": "z", "nt_resnum": 134, "nt_name": "A", "nt_code": "A", "nt_id": "///z/134", "linked_nts": [ "///z/133", "///z/135" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -69.026, "beta": -172.957, "gamma": 46.299, "delta": 88.333, "epsilon": -138.848, "zeta": -101.547, "epsilon_zeta": -37.301, "bb_type": "BI", "chi": -152.787, "glyco_bond": "anti", "C5prime_xyz": [ -0.981, 8.607, 0.230 ], "P_xyz": [ 1.535, 8.741, 0.981 ], "form": ".", "ssZp": 4.095, "Dp": 4.580, "splay_angle": 29.574, "splay_distance": 4.657, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 172.137, "theta": -153.285, "eta_prime": -178.696, "theta_prime": -146.336, "eta_base": -146.842, "theta_base": -119.645, "v0": 5.446, "v1": -23.527, "v2": 31.674, "v3": -29.495, "v4": 15.236, "amplitude": 32.085, "phase_angle": 9.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.753, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 111.519, 233.702, 172.640 ], "x_axis": [ -0.732, -0.237, 0.639 ], "y_axis": [ -0.677, 0.154, -0.719 ], "z_axis": [ 0.072, -0.959, -0.273 ], "quaternion": [ -0.193, -0.311, 0.735, -0.571 ] } }, { "index": 1713, "index_chain": 16, "chain_name": "z", "nt_resnum": 135, "nt_name": "G", "nt_code": "G", "nt_id": "///z/135", "linked_nts": [ "///z/134", "///z/136" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -35.603, "beta": 155.668, "gamma": 40.181, "delta": 84.122, "epsilon": -85.322, "zeta": -140.355, "epsilon_zeta": 55.032, "bb_type": "--", "chi": -144.195, "glyco_bond": "anti", "C5prime_xyz": [ -0.860, 8.611, -0.371 ], "P_xyz": [ 1.743, 8.341, -0.576 ], "form": ".", "ssZp": 3.022, "Dp": 4.739, "splay_angle": 113.730, "splay_distance": 16.786, "splay_ratio": 0.837, "d22": null, "d64": null, "eta": -165.294, "theta": -159.909, "eta_prime": -160.604, "theta_prime": 177.761, "eta_base": -138.386, "theta_base": 143.762, "v0": 7.597, "v1": -27.537, "v2": 35.990, "v3": -32.610, "v4": 15.823, "amplitude": 36.248, "phase_angle": 6.846, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.120, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 111.841, 229.217, 171.426 ], "x_axis": [ -0.978, -0.100, 0.184 ], "y_axis": [ -0.204, 0.248, -0.947 ], "z_axis": [ 0.049, -0.964, -0.263 ], "quaternion": [ -0.043, -0.096, 0.789, -0.606 ] } }, { "index": 1714, "index_chain": 17, "chain_name": "z", "nt_resnum": 136, "nt_name": "A", "nt_code": "A", "nt_id": "///z/136", "linked_nts": [ "///z/135", "///z/137" ], "nt_type": "RNA", "dbn": "a", "summary": "pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,internal-loop,splayed-apart", "alpha": -64.017, "beta": 122.224, "gamma": -49.922, "delta": 148.009, "epsilon": -90.399, "zeta": -144.099, "epsilon_zeta": 53.700, "bb_type": "--", "chi": -73.288, "glyco_bond": "anti", "C5prime_xyz": [ -2.836, 7.018, -2.945 ], "P_xyz": [ -1.866, 9.414, -3.381 ], "form": ".", "ssZp": 0.073, "Dp": 0.787, "splay_angle": 155.040, "splay_distance": 19.251, "splay_ratio": 0.976, "d22": null, "d64": null, "eta": 84.131, "theta": -144.507, "eta_prime": 85.163, "theta_prime": -140.726, "eta_base": 58.447, "theta_base": -133.003, "v0": -18.958, "v1": 33.832, "v2": -35.005, "v3": 24.955, "v4": -3.958, "amplitude": 35.854, "phase_angle": 167.503, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.001, "origin": [ 120.659, 227.732, 157.220 ], "x_axis": [ 0.282, 0.958, -0.061 ], "y_axis": [ -0.668, 0.241, 0.704 ], "z_axis": [ 0.689, -0.157, 0.707 ], "quaternion": [ 0.747, 0.289, 0.251, 0.544 ] } }, { "index": 1715, "index_chain": 18, "chain_name": "z", "nt_resnum": 137, "nt_name": "G", "nt_code": "G", "nt_id": "///z/137", "linked_nts": [ "///z/136", "///z/138" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -36.249, "beta": -163.454, "gamma": 66.121, "delta": 80.072, "epsilon": -150.416, "zeta": -66.094, "epsilon_zeta": -84.321, "bb_type": "BI", "chi": -165.239, "glyco_bond": "anti", "C5prime_xyz": [ -1.573, 8.761, 0.811 ], "P_xyz": [ 0.931, 9.294, 1.354 ], "form": ".", "ssZp": 4.520, "Dp": 4.613, "splay_angle": 29.639, "splay_distance": 4.645, "splay_ratio": 0.257, "d22": null, "d64": null, "eta": -102.549, "theta": -140.735, "eta_prime": -98.693, "theta_prime": -137.843, "eta_base": -74.355, "theta_base": -101.276, "v0": 0.784, "v1": -23.569, "v2": 36.105, "v3": -36.613, "v4": 22.584, "amplitude": 37.838, "phase_angle": 17.410, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.010, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 110.099, 220.951, 171.818 ], "x_axis": [ -0.820, 0.526, -0.225 ], "y_axis": [ 0.481, 0.421, -0.769 ], "z_axis": [ -0.309, -0.739, -0.599 ], "quaternion": [ -0.025, 0.299, 0.843, -0.447 ] } }, { "index": 1716, "index_chain": 19, "chain_name": "z", "nt_resnum": 138, "nt_name": "C", "nt_code": "C", "nt_id": "///z/138", "linked_nts": [ "///z/137", "///z/139" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -64.611, "beta": 174.302, "gamma": 57.042, "delta": 78.823, "epsilon": -141.584, "zeta": -75.311, "epsilon_zeta": -66.273, "bb_type": "BI", "chi": -169.313, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.691, 1.069 ], "P_xyz": [ 1.244, 9.075, 1.421 ], "form": "A", "ssZp": 4.627, "Dp": 4.697, "splay_angle": 26.680, "splay_distance": 4.167, "splay_ratio": 0.232, "d22": 3.993, "d64": 4.250, "eta": 171.619, "theta": -142.848, "eta_prime": -172.284, "theta_prime": -140.066, "eta_base": -119.792, "theta_base": -107.618, "v0": 2.209, "v1": -25.045, "v2": 37.171, "v3": -36.875, "v4": 21.844, "amplitude": 38.551, "phase_angle": 15.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.955, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 106.730, 218.786, 169.463 ], "x_axis": [ -0.248, 0.735, -0.631 ], "y_axis": [ 0.937, 0.015, -0.350 ], "z_axis": [ -0.248, -0.678, -0.692 ], "quaternion": [ 0.137, 0.598, 0.699, -0.367 ] } }, { "index": 1717, "index_chain": 20, "chain_name": "z", "nt_resnum": 139, "nt_name": "C", "nt_code": "C", "nt_id": "///z/139", "linked_nts": [ "///z/138", "///z/140" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.873, "beta": 167.921, "gamma": 53.270, "delta": 80.188, "epsilon": -159.502, "zeta": -94.811, "epsilon_zeta": -64.690, "bb_type": "BI", "chi": -173.428, "glyco_bond": "anti", "C5prime_xyz": [ -1.417, 8.633, 1.305 ], "P_xyz": [ 1.132, 8.959, 1.821 ], "form": "A", "ssZp": 4.549, "Dp": 4.554, "splay_angle": 21.468, "splay_distance": 3.270, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 167.715, "theta": -141.355, "eta_prime": -175.227, "theta_prime": -145.832, "eta_base": -125.166, "theta_base": -120.881, "v0": 1.531, "v1": -23.907, "v2": 35.917, "v3": -36.034, "v4": 21.753, "amplitude": 37.424, "phase_angle": 16.311, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.909, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 104.343, 217.494, 166.302 ], "x_axis": [ 0.419, 0.708, -0.568 ], "y_axis": [ 0.901, -0.401, 0.166 ], "z_axis": [ -0.110, -0.582, -0.806 ], "quaternion": [ 0.231, 0.810, 0.496, -0.209 ] } }, { "index": 1718, "index_chain": 21, "chain_name": "z", "nt_resnum": 140, "nt_name": "A", "nt_code": "A", "nt_id": "///z/140", "linked_nts": [ "///z/139", "///z/141" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -177.524, "beta": -145.925, "gamma": 137.451, "delta": 83.693, "epsilon": -148.305, "zeta": -60.387, "epsilon_zeta": -87.917, "bb_type": "BI", "chi": 172.867, "glyco_bond": "anti", "C5prime_xyz": [ -1.433, 8.154, 2.064 ], "P_xyz": [ 1.104, 8.681, 1.650 ], "form": "A", "ssZp": 4.503, "Dp": 4.616, "splay_angle": 22.956, "splay_distance": 3.554, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 150.578, "theta": -127.783, "eta_prime": 167.399, "theta_prime": -133.109, "eta_base": -148.251, "theta_base": -104.416, "v0": 4.224, "v1": -24.646, "v2": 34.511, "v3": -33.073, "v4": 18.230, "amplitude": 35.272, "phase_angle": 11.926, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 102.812, 216.673, 163.531 ], "x_axis": [ 0.876, 0.464, -0.130 ], "y_axis": [ 0.470, -0.767, 0.437 ], "z_axis": [ 0.103, -0.444, -0.890 ], "quaternion": [ 0.234, 0.940, 0.249, -0.007 ] } }, { "index": 1719, "index_chain": 22, "chain_name": "z", "nt_resnum": 141, "nt_name": "U", "nt_code": "U", "nt_id": "///z/141", "linked_nts": [ "///z/140", "///z/142" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -96.325, "beta": -150.872, "gamma": 55.041, "delta": 84.095, "epsilon": 176.405, "zeta": -86.639, "epsilon_zeta": -96.956, "bb_type": "BI", "chi": -150.034, "glyco_bond": "anti", "C5prime_xyz": [ -1.132, 8.695, -0.026 ], "P_xyz": [ 1.361, 8.975, 0.760 ], "form": ".", "ssZp": 4.055, "Dp": 4.280, "splay_angle": 27.414, "splay_distance": 4.372, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 158.484, "theta": -148.412, "eta_prime": 176.982, "theta_prime": -153.769, "eta_base": -132.858, "theta_base": -140.444, "v0": 4.055, "v1": -24.261, "v2": 34.148, "v3": -32.740, "v4": 18.126, "amplitude": 34.926, "phase_angle": 12.110, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.370, "filter_rmsd": 0.107, "frame": { "rmsd": 0.006, "origin": [ 103.659, 217.115, 160.108 ], "x_axis": [ 0.919, -0.205, 0.338 ], "y_axis": [ -0.310, -0.904, 0.293 ], "z_axis": [ 0.245, -0.374, -0.894 ], "quaternion": [ 0.173, 0.964, -0.134, 0.151 ] } }, { "index": 1720, "index_chain": 23, "chain_name": "z", "nt_resnum": 142, "nt_name": "A", "nt_code": "A", "nt_id": "///z/142", "linked_nts": [ "///z/141", "///z/143" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 169.998, "beta": -144.533, "gamma": 155.755, "delta": 82.869, "epsilon": -135.980, "zeta": -75.798, "epsilon_zeta": -60.183, "bb_type": "BI", "chi": 170.105, "glyco_bond": "anti", "C5prime_xyz": [ -1.612, 8.152, 2.185 ], "P_xyz": [ 0.752, 9.168, 1.695 ], "form": "A", "ssZp": 4.509, "Dp": 4.628, "splay_angle": 23.791, "splay_distance": 3.741, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 166.434, "theta": -146.344, "eta_prime": 177.889, "theta_prime": -147.789, "eta_base": -153.253, "theta_base": -125.037, "v0": 1.982, "v1": -22.881, "v2": 33.918, "v3": -33.747, "v4": 20.047, "amplitude": 35.197, "phase_angle": 15.490, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.137, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 104.281, 217.309, 155.786 ], "x_axis": [ 0.717, -0.415, 0.560 ], "y_axis": [ -0.640, -0.710, 0.294 ], "z_axis": [ 0.275, -0.569, -0.775 ], "quaternion": [ 0.241, 0.895, -0.295, 0.233 ] } }, { "index": 1721, "index_chain": 24, "chain_name": "z", "nt_resnum": 143, "nt_name": "G", "nt_code": "G", "nt_id": "///z/143", "linked_nts": [ "///z/142", "///z/144" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.914, "beta": -173.838, "gamma": 44.276, "delta": 84.300, "epsilon": -103.598, "zeta": -87.536, "epsilon_zeta": -16.062, "bb_type": "--", "chi": -158.630, "glyco_bond": "anti", "C5prime_xyz": [ -1.283, 8.718, 0.489 ], "P_xyz": [ 1.194, 9.110, 1.261 ], "form": ".", "ssZp": 4.032, "Dp": 4.693, "splay_angle": 29.619, "splay_distance": 5.440, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 178.070, "theta": -96.240, "eta_prime": -173.382, "theta_prime": -98.652, "eta_base": -142.645, "theta_base": -79.186, "v0": 3.410, "v1": -23.946, "v2": 34.192, "v3": -33.194, "v4": 18.809, "amplitude": 35.117, "phase_angle": 13.183, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.764, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 106.737, 216.894, 152.994 ], "x_axis": [ 0.165, -0.754, 0.636 ], "y_axis": [ -0.940, -0.316, -0.130 ], "z_axis": [ 0.299, -0.577, -0.760 ], "quaternion": [ 0.149, 0.748, -0.566, 0.312 ] } }, { "index": 1722, "index_chain": 25, "chain_name": "z", "nt_resnum": 144, "nt_name": "U", "nt_code": "U", "nt_id": "///z/144", "linked_nts": [ "///z/143", "///z/145" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 84.581, "beta": -114.245, "gamma": -118.765, "delta": 82.540, "epsilon": -131.628, "zeta": -87.874, "epsilon_zeta": -43.754, "bb_type": "BI", "chi": -170.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.379, 8.571, 1.164 ], "P_xyz": [ -1.474, 10.908, -0.013 ], "form": ".", "ssZp": 4.588, "Dp": 4.691, "splay_angle": 21.127, "splay_distance": 3.398, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": -172.948, "theta": 157.398, "eta_prime": -157.173, "theta_prime": 174.463, "eta_base": -117.088, "theta_base": -177.707, "v0": 2.945, "v1": -24.191, "v2": 35.026, "v3": -34.310, "v4": 19.798, "amplitude": 36.105, "phase_angle": 14.047, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 108.956, 211.929, 152.840 ], "x_axis": [ -0.315, -0.803, 0.505 ], "y_axis": [ -0.892, 0.068, -0.448 ], "z_axis": [ 0.325, -0.591, -0.738 ], "quaternion": [ -0.062, -0.582, 0.728, -0.357 ] } }, { "index": 1723, "index_chain": 26, "chain_name": "z", "nt_resnum": 145, "nt_name": "G", "nt_code": "G", "nt_id": "///z/145", "linked_nts": [ "///z/144", "///z/146" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -73.125, "beta": -176.131, "gamma": 41.979, "delta": 81.902, "epsilon": 178.287, "zeta": -91.446, "epsilon_zeta": -90.267, "bb_type": "BI", "chi": -141.607, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.739, -0.560 ], "P_xyz": [ 1.271, 9.328, -0.412 ], "form": ".", "ssZp": 3.870, "Dp": 4.341, "splay_angle": 28.843, "splay_distance": 4.591, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 155.093, "theta": -150.676, "eta_prime": 164.248, "theta_prime": -151.280, "eta_base": 173.613, "theta_base": -129.160, "v0": 3.026, "v1": -24.280, "v2": 35.129, "v3": -34.385, "v4": 19.803, "amplitude": 36.198, "phase_angle": 13.963, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.579, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 111.838, 210.919, 151.350 ], "x_axis": [ -0.765, -0.421, 0.488 ], "y_axis": [ -0.592, 0.158, -0.791 ], "z_axis": [ 0.256, -0.893, -0.370 ], "quaternion": [ -0.077, -0.334, 0.757, -0.556 ] } }, { "index": 1724, "index_chain": 27, "chain_name": "z", "nt_resnum": 146, "nt_name": "G", "nt_code": "G", "nt_id": "///z/146", "linked_nts": [ "///z/145", "///z/147" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 169.355, "beta": -132.249, "gamma": 156.326, "delta": 82.932, "epsilon": -148.964, "zeta": -80.264, "epsilon_zeta": -68.701, "bb_type": "BI", "chi": -171.721, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.580, 1.238 ], "P_xyz": [ 0.838, 9.166, -0.152 ], "form": "A", "ssZp": 4.572, "Dp": 4.610, "splay_angle": 26.425, "splay_distance": 4.107, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 167.421, "theta": -154.459, "eta_prime": -174.156, "theta_prime": -162.053, "eta_base": -138.063, "theta_base": -149.804, "v0": 3.370, "v1": -24.197, "v2": 34.656, "v3": -33.705, "v4": 19.155, "amplitude": 35.617, "phase_angle": 13.340, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.093, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 112.979, 206.560, 150.468 ], "x_axis": [ -0.955, -0.274, 0.113 ], "y_axis": [ -0.213, 0.369, -0.905 ], "z_axis": [ 0.207, -0.888, -0.411 ], "quaternion": [ 0.028, -0.147, 0.827, -0.542 ] } }, { "index": 1725, "index_chain": 28, "chain_name": "z", "nt_resnum": 147, "nt_name": "U", "nt_code": "U", "nt_id": "///z/147", "linked_nts": [ "///z/146", "///z/148" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.907, "beta": 177.542, "gamma": 48.848, "delta": 82.367, "epsilon": -135.515, "zeta": -76.901, "epsilon_zeta": -58.614, "bb_type": "BI", "chi": -165.822, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.626, 0.892 ], "P_xyz": [ 1.203, 8.944, 1.502 ], "form": "A", "ssZp": 4.524, "Dp": 4.694, "splay_angle": 26.762, "splay_distance": 4.220, "splay_ratio": 0.232, "d22": 4.431, "d64": 4.326, "eta": 174.433, "theta": -137.690, "eta_prime": -178.440, "theta_prime": -132.992, "eta_base": -154.050, "theta_base": -99.267, "v0": 3.445, "v1": -24.766, "v2": 35.496, "v3": -34.508, "v4": 19.598, "amplitude": 36.480, "phase_angle": 13.335, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 114.619, 202.806, 150.763 ], "x_axis": [ -0.964, 0.022, -0.264 ], "y_axis": [ 0.241, 0.487, -0.839 ], "z_axis": [ 0.110, -0.873, -0.475 ], "quaternion": [ 0.109, 0.077, 0.855, -0.501 ] } }, { "index": 1726, "index_chain": 29, "chain_name": "z", "nt_resnum": 148, "nt_name": "C", "nt_code": "C", "nt_id": "///z/148", "linked_nts": [ "///z/147", "///z/149" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.521, "beta": 170.999, "gamma": 54.521, "delta": 81.594, "epsilon": -148.769, "zeta": -82.064, "epsilon_zeta": -66.705, "bb_type": "BI", "chi": -155.868, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.793, 0.280 ], "P_xyz": [ 1.300, 9.157, 0.276 ], "form": "A", "ssZp": 4.300, "Dp": 4.616, "splay_angle": 25.776, "splay_distance": 4.071, "splay_ratio": 0.223, "d22": 4.548, "d64": 4.609, "eta": 168.019, "theta": -152.125, "eta_prime": -175.641, "theta_prime": -150.919, "eta_base": -128.974, "theta_base": -130.322, "v0": 2.054, "v1": -23.898, "v2": 35.420, "v3": -35.211, "v4": 20.928, "amplitude": 36.753, "phase_angle": 15.478, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 112.987, 199.289, 149.097 ], "x_axis": [ -0.583, 0.465, -0.666 ], "y_axis": [ 0.811, 0.284, -0.512 ], "z_axis": [ -0.049, -0.838, -0.543 ], "quaternion": [ 0.199, 0.411, 0.776, -0.435 ] } }, { "index": 1727, "index_chain": 30, "chain_name": "z", "nt_resnum": 149, "nt_name": "U", "nt_code": "U", "nt_id": "///z/149", "linked_nts": [ "///z/148", "///z/150" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -59.620, "beta": 162.267, "gamma": 60.320, "delta": 81.543, "epsilon": -144.690, "zeta": -78.763, "epsilon_zeta": -65.928, "bb_type": "BI", "chi": -160.312, "glyco_bond": "anti", "C5prime_xyz": [ -1.401, 8.717, 0.540 ], "P_xyz": [ 1.187, 9.063, 0.275 ], "form": ".", "ssZp": 4.426, "Dp": 4.655, "splay_angle": 40.376, "splay_distance": 6.215, "splay_ratio": 0.345, "d22": null, "d64": null, "eta": 172.669, "theta": -146.554, "eta_prime": -174.866, "theta_prime": -142.506, "eta_base": -142.528, "theta_base": -119.372, "v0": 2.510, "v1": -24.320, "v2": 35.665, "v3": -35.214, "v4": 20.630, "amplitude": 36.890, "phase_angle": 14.806, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.824, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 111.728, 195.887, 147.249 ], "x_axis": [ -0.148, 0.599, -0.787 ], "y_axis": [ 0.986, 0.025, -0.166 ], "z_axis": [ -0.079, -0.800, -0.594 ], "quaternion": [ 0.266, 0.596, 0.665, -0.363 ] } }, { "index": 1728, "index_chain": 31, "chain_name": "z", "nt_resnum": 150, "nt_name": "G", "nt_code": "G", "nt_id": "///z/150", "linked_nts": [ "///z/149", "///z/151" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -77.344, "beta": -159.449, "gamma": 54.103, "delta": 83.540, "epsilon": -150.026, "zeta": -73.879, "epsilon_zeta": -76.147, "bb_type": "BI", "chi": -166.053, "glyco_bond": "anti", "C5prime_xyz": [ -1.147, 8.626, 0.921 ], "P_xyz": [ 1.284, 8.749, 1.906 ], "form": "A", "ssZp": 4.533, "Dp": 4.626, "splay_angle": 26.418, "splay_distance": 4.144, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 176.425, "theta": -145.912, "eta_prime": -179.411, "theta_prime": -141.300, "eta_base": -151.163, "theta_base": -117.554, "v0": 4.797, "v1": -25.409, "v2": 35.257, "v3": -33.465, "v4": 18.113, "amplitude": 35.934, "phase_angle": 11.142, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.627, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 110.486, 191.922, 142.627 ], "x_axis": [ 0.355, 0.898, -0.261 ], "y_axis": [ 0.819, -0.163, 0.551 ], "z_axis": [ 0.452, -0.409, -0.793 ], "quaternion": [ 0.316, 0.760, 0.565, 0.063 ] } }, { "index": 1729, "index_chain": 32, "chain_name": "z", "nt_resnum": 151, "nt_name": "C", "nt_code": "C", "nt_id": "///z/151", "linked_nts": [ "///z/150", "///z/152" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.144, "beta": 176.471, "gamma": 53.679, "delta": 80.949, "epsilon": -136.944, "zeta": -86.442, "epsilon_zeta": -50.502, "bb_type": "BI", "chi": -157.916, "glyco_bond": "anti", "C5prime_xyz": [ -1.235, 8.767, 0.411 ], "P_xyz": [ 1.360, 9.113, 0.580 ], "form": "A", "ssZp": 4.333, "Dp": 4.702, "splay_angle": 26.947, "splay_distance": 4.280, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 176.106, "theta": -148.074, "eta_prime": -172.684, "theta_prime": -145.165, "eta_base": -140.288, "theta_base": -121.986, "v0": 2.838, "v1": -24.780, "v2": 36.123, "v3": -35.474, "v4": 20.588, "amplitude": 37.286, "phase_angle": 14.351, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.974, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 111.096, 191.076, 138.616 ], "x_axis": [ 0.726, 0.684, 0.068 ], "y_axis": [ 0.523, -0.613, 0.592 ], "z_axis": [ 0.447, -0.395, -0.803 ], "quaternion": [ 0.278, 0.886, 0.340, 0.145 ] } }, { "index": 1730, "index_chain": 33, "chain_name": "z", "nt_resnum": 152, "nt_name": "G", "nt_code": "G", "nt_id": "///z/152", "linked_nts": [ "///z/151", "///z/153" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -55.850, "beta": 153.728, "gamma": 59.876, "delta": 79.880, "epsilon": -149.638, "zeta": -80.748, "epsilon_zeta": -68.890, "bb_type": "BI", "chi": -173.195, "glyco_bond": "anti", "C5prime_xyz": [ -1.682, 8.651, 1.268 ], "P_xyz": [ 0.895, 9.109, 1.289 ], "form": "A", "ssZp": 4.590, "Dp": 4.608, "splay_angle": 28.020, "splay_distance": 4.388, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": 167.357, "theta": -150.518, "eta_prime": -177.252, "theta_prime": -144.856, "eta_base": -139.596, "theta_base": -127.384, "v0": 0.462, "v1": -23.201, "v2": 35.806, "v3": -36.532, "v4": 22.751, "amplitude": 37.630, "phase_angle": 17.913, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.655, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 113.090, 190.698, 134.848 ], "x_axis": [ 0.733, 0.418, 0.537 ], "y_axis": [ 0.072, -0.833, 0.549 ], "z_axis": [ 0.677, -0.364, -0.640 ], "quaternion": [ 0.255, 0.895, 0.137, 0.339 ] } }, { "index": 1731, "index_chain": 34, "chain_name": "z", "nt_resnum": 153, "nt_name": "G", "nt_code": "G", "nt_id": "///z/153", "linked_nts": [ "///z/152", "///z/154" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -49.691, "beta": 176.846, "gamma": 68.638, "delta": 144.696, "epsilon": -132.035, "zeta": 14.553, "epsilon_zeta": 213.412, "bb_type": "--", "chi": -132.690, "glyco_bond": "anti", "C5prime_xyz": [ -1.796, 8.747, -0.558 ], "P_xyz": [ 0.698, 9.268, 0.076 ], "form": ".", "ssZp": 1.770, "Dp": 1.721, "splay_angle": 134.930, "splay_distance": 19.475, "splay_ratio": 0.924, "d22": null, "d64": null, "eta": -158.754, "theta": 30.034, "eta_prime": -132.494, "theta_prime": -12.573, "eta_base": -114.898, "theta_base": -65.876, "v0": -21.492, "v1": 34.753, "v2": -34.028, "v3": 22.484, "v4": -0.795, "amplitude": 35.674, "phase_angle": 162.527, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.728, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 115.874, 191.102, 131.481 ], "x_axis": [ 0.637, -0.030, 0.770 ], "y_axis": [ -0.249, -0.954, 0.168 ], "z_axis": [ 0.730, -0.299, -0.615 ], "quaternion": [ 0.130, 0.895, -0.078, 0.419 ] } }, { "index": 1732, "index_chain": 35, "chain_name": "z", "nt_resnum": 154, "nt_name": "A", "nt_code": "A", "nt_id": "///z/154", "linked_nts": [ "///z/153", "///z/155" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 162.813, "beta": -166.150, "gamma": -84.277, "delta": 81.418, "epsilon": -146.902, "zeta": -60.879, "epsilon_zeta": -86.022, "bb_type": "BI", "chi": 179.540, "glyco_bond": "anti", "C5prime_xyz": [ -1.518, 8.368, 1.684 ], "P_xyz": [ -1.298, 10.698, 2.868 ], "form": ".", "ssZp": 4.668, "Dp": 4.674, "splay_angle": 43.839, "splay_distance": 6.688, "splay_ratio": 0.378, "d22": null, "d64": null, "eta": -79.117, "theta": 179.701, "eta_prime": -49.688, "theta_prime": -162.270, "eta_base": 15.843, "theta_base": -124.510, "v0": 3.727, "v1": -25.684, "v2": 36.608, "v3": -35.402, "v4": 19.994, "amplitude": 37.569, "phase_angle": 12.988, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 114.950, 173.368, 123.485 ], "x_axis": [ -0.229, 0.148, -0.962 ], "y_axis": [ -0.564, 0.785, 0.255 ], "z_axis": [ 0.793, 0.601, -0.097 ], "quaternion": [ 0.604, -0.143, 0.726, 0.295 ] } }, { "index": 1733, "index_chain": 36, "chain_name": "z", "nt_resnum": 155, "nt_name": "A", "nt_code": "A", "nt_id": "///z/155", "linked_nts": [ "///z/154", "///z/156" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate", "alpha": -69.896, "beta": -160.464, "gamma": 56.731, "delta": 78.559, "epsilon": -150.772, "zeta": -46.376, "epsilon_zeta": -104.396, "bb_type": "BI", "chi": -177.218, "glyco_bond": "anti", "C5prime_xyz": [ -1.751, 8.537, 1.484 ], "P_xyz": [ 0.521, 8.978, 2.719 ], "form": ".", "ssZp": 4.621, "Dp": 4.620, "splay_angle": 25.523, "splay_distance": 4.731, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": -178.015, "theta": -126.009, "eta_prime": -165.033, "theta_prime": -125.838, "eta_base": -129.852, "theta_base": -106.064, "v0": 0.373, "v1": -23.475, "v2": 36.381, "v3": -37.197, "v4": 23.205, "amplitude": 38.271, "phase_angle": 18.080, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.675, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 120.744, 175.746, 121.139 ], "x_axis": [ -0.597, 0.482, -0.641 ], "y_axis": [ -0.627, 0.217, 0.748 ], "z_axis": [ 0.500, 0.849, 0.173 ], "quaternion": [ 0.445, -0.056, 0.641, 0.623 ] } }, { "index": 1734, "index_chain": 37, "chain_name": "z", "nt_resnum": 156, "nt_name": "C", "nt_code": "C", "nt_id": "///z/156", "linked_nts": [ "///z/155", "///z/157" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop", "alpha": -151.273, "beta": 147.540, "gamma": 169.975, "delta": 144.926, "epsilon": -157.010, "zeta": -79.366, "epsilon_zeta": -77.644, "bb_type": "BI", "chi": -163.705, "glyco_bond": "anti", "C5prime_xyz": [ -1.971, 8.598, 1.123 ], "P_xyz": [ -0.428, 10.618, 0.453 ], "form": ".", "ssZp": 1.623, "Dp": 2.142, "splay_angle": 20.804, "splay_distance": 3.842, "splay_ratio": 0.195, "d22": 4.980, "d64": 4.926, "eta": -145.225, "theta": -131.210, "eta_prime": -133.640, "theta_prime": -150.743, "eta_base": -106.452, "theta_base": -120.213, "v0": -21.547, "v1": 34.730, "v2": -33.816, "v3": 22.210, "v4": -0.606, "amplitude": 35.521, "phase_angle": 162.177, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.059, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 122.904, 178.809, 118.254 ], "x_axis": [ -0.892, 0.414, -0.182 ], "y_axis": [ -0.192, 0.018, 0.981 ], "z_axis": [ 0.410, 0.910, 0.064 ], "quaternion": [ 0.218, 0.082, 0.679, 0.696 ] } }, { "index": 1735, "index_chain": 38, "chain_name": "z", "nt_resnum": 157, "nt_name": "C", "nt_code": "C", "nt_id": "///z/157", "linked_nts": [ "///z/156", "///z/158" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 138.996, "beta": 168.237, "gamma": 155.517, "delta": 80.050, "epsilon": -174.522, "zeta": -81.675, "epsilon_zeta": -92.847, "bb_type": "BI", "chi": -159.659, "glyco_bond": "anti", "C5prime_xyz": [ -1.565, 8.884, 0.469 ], "P_xyz": [ -0.357, 10.527, -1.199 ], "form": "A", "ssZp": 4.270, "Dp": 4.346, "splay_angle": 18.849, "splay_distance": 3.165, "splay_ratio": 0.170, "d22": null, "d64": null, "eta": 110.177, "theta": -168.768, "eta_prime": 143.007, "theta_prime": -172.627, "eta_base": -165.163, "theta_base": -144.817, "v0": -1.960, "v1": -20.597, "v2": 33.973, "v3": -36.018, "v4": 23.929, "amplitude": 36.529, "phase_angle": 21.559, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.005, "origin": [ 124.686, 181.733, 116.512 ], "x_axis": [ -0.799, 0.418, 0.433 ], "y_axis": [ 0.348, -0.265, 0.899 ], "z_axis": [ 0.490, 0.869, 0.066 ], "quaternion": [ 0.024, 0.316, 0.606, 0.730 ] } }, { "index": 1736, "index_chain": 39, "chain_name": "z", "nt_resnum": 158, "nt_name": "G", "nt_code": "G", "nt_id": "///z/158", "linked_nts": [ "///z/157", "///z/159" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 160.137, "beta": -149.151, "gamma": 162.685, "delta": 82.254, "epsilon": -153.053, "zeta": -69.376, "epsilon_zeta": -83.677, "bb_type": "BI", "chi": 179.532, "glyco_bond": "anti", "C5prime_xyz": [ -1.448, 8.422, 1.704 ], "P_xyz": [ 0.614, 9.700, 0.707 ], "form": ".", "ssZp": 4.553, "Dp": 4.595, "splay_angle": 26.749, "splay_distance": 4.302, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 158.248, "theta": -158.462, "eta_prime": 176.613, "theta_prime": -160.949, "eta_base": -137.032, "theta_base": -148.264, "v0": 3.180, "v1": -24.456, "v2": 35.232, "v3": -34.386, "v4": 19.682, "amplitude": 36.264, "phase_angle": 13.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.474, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 124.855, 184.717, 115.472 ], "x_axis": [ -0.522, 0.239, 0.819 ], "y_axis": [ 0.741, -0.348, 0.574 ], "z_axis": [ 0.422, 0.906, 0.005 ], "quaternion": [ -0.183, 0.453, 0.541, 0.685 ] } }, { "index": 1737, "index_chain": 40, "chain_name": "z", "nt_resnum": 159, "nt_name": "G", "nt_code": "G", "nt_id": "///z/159", "linked_nts": [ "///z/158", "///z/160" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -69.167, "beta": -166.279, "gamma": 48.671, "delta": 81.351, "epsilon": -158.809, "zeta": -77.512, "epsilon_zeta": -81.297, "bb_type": "BI", "chi": -161.419, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.797, 0.610 ], "P_xyz": [ 0.938, 9.385, 1.522 ], "form": "A", "ssZp": 4.390, "Dp": 4.510, "splay_angle": 23.210, "splay_distance": 3.914, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 173.027, "theta": -132.318, "eta_prime": -178.149, "theta_prime": -139.519, "eta_base": -155.011, "theta_base": -118.069, "v0": 0.632, "v1": -22.469, "v2": 34.526, "v3": -35.143, "v4": 21.768, "amplitude": 36.231, "phase_angle": 17.650, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.797, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 124.292, 188.505, 113.513 ], "x_axis": [ -0.145, -0.001, 0.989 ], "y_axis": [ 0.894, -0.429, 0.130 ], "z_axis": [ 0.424, 0.903, 0.063 ], "quaternion": [ -0.350, 0.553, 0.404, 0.640 ] } }, { "index": 1738, "index_chain": 41, "chain_name": "z", "nt_resnum": 160, "nt_name": "U", "nt_code": "U", "nt_id": "///z/160", "linked_nts": [ "///z/159", "///z/161" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 166.606, "beta": -167.528, "gamma": 158.787, "delta": 75.576, "epsilon": 67.915, "zeta": 111.602, "epsilon_zeta": -43.687, "bb_type": "--", "chi": -176.740, "glyco_bond": "anti", "C5prime_xyz": [ -1.228, 8.368, 1.526 ], "P_xyz": [ 0.609, 9.893, 0.449 ], "form": ".", "ssZp": 3.461, "Dp": 3.424, "splay_angle": 22.016, "splay_distance": 3.697, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": -162.948, "theta": -121.426, "eta_prime": -162.137, "theta_prime": -135.289, "eta_base": -130.112, "theta_base": -113.109, "v0": 6.873, "v1": -28.837, "v2": 38.981, "v3": -36.014, "v4": 18.361, "amplitude": 39.449, "phase_angle": 8.843, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.310, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 123.903, 192.294, 114.418 ], "x_axis": [ 0.241, -0.364, 0.900 ], "y_axis": [ 0.881, -0.306, -0.360 ], "z_axis": [ 0.407, 0.879, 0.247 ], "quaternion": [ 0.544, -0.570, -0.227, -0.573 ] } }, { "index": 1739, "index_chain": 42, "chain_name": "z", "nt_resnum": 161, "nt_name": "G", "nt_code": "G", "nt_id": "///z/161", "linked_nts": [ "///z/160", "///z/162" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate", "alpha": 53.180, "beta": -146.629, "gamma": 162.895, "delta": 81.803, "epsilon": -156.326, "zeta": -118.789, "epsilon_zeta": -37.536, "bb_type": "BI", "chi": -171.398, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.694, 1.203 ], "P_xyz": [ 0.492, 9.842, -0.017 ], "form": ".", "ssZp": 4.449, "Dp": 4.490, "splay_angle": 27.581, "splay_distance": 4.403, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 98.236, "theta": -162.397, "eta_prime": 146.035, "theta_prime": -145.408, "eta_base": -167.920, "theta_base": -81.851, "v0": -0.404, "v1": -21.199, "v2": 33.464, "v3": -34.655, "v4": 22.101, "amplitude": 35.446, "phase_angle": 19.247, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 124.556, 195.425, 116.270 ], "x_axis": [ 0.417, -0.855, 0.310 ], "y_axis": [ 0.581, -0.011, -0.813 ], "z_axis": [ 0.699, 0.519, 0.492 ], "quaternion": [ 0.689, -0.484, 0.141, -0.521 ] } }, { "index": 1740, "index_chain": 43, "chain_name": "z", "nt_resnum": 162, "nt_name": "A", "nt_code": "A", "nt_id": "///z/162", "linked_nts": [ "///z/161", "///z/163" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,hairpin-loop", "alpha": -169.781, "beta": -113.331, "gamma": 168.151, "delta": 147.785, "epsilon": -137.164, "zeta": -170.592, "epsilon_zeta": 33.428, "bb_type": "--", "chi": -44.345, "glyco_bond": "--", "C5prime_xyz": [ -3.854, 5.747, -3.108 ], "P_xyz": [ -2.918, 3.502, -4.099 ], "form": ".", "ssZp": 0.266, "Dp": 1.685, "splay_angle": 37.893, "splay_distance": 6.473, "splay_ratio": 0.327, "d22": null, "d64": null, "eta": -156.562, "theta": -147.301, "eta_prime": -125.152, "theta_prime": 164.684, "eta_base": -80.856, "theta_base": -135.492, "v0": -20.559, "v1": 35.170, "v2": -35.516, "v3": 24.554, "v4": -2.692, "amplitude": 36.701, "phase_angle": 165.395, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 128.830, 196.450, 116.012 ], "x_axis": [ 0.780, -0.422, 0.462 ], "y_axis": [ 0.357, 0.907, 0.225 ], "z_axis": [ -0.514, -0.010, 0.858 ], "quaternion": [ 0.941, 0.062, -0.259, -0.207 ] } }, { "index": 1741, "index_chain": 44, "chain_name": "z", "nt_resnum": 163, "nt_name": "G", "nt_code": "G", "nt_id": "///z/163", "linked_nts": [ "///z/162", "///z/164" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": 77.657, "beta": -91.075, "gamma": -165.132, "delta": 81.444, "epsilon": -138.178, "zeta": -71.225, "epsilon_zeta": -66.953, "bb_type": "BI", "chi": -140.136, "glyco_bond": "anti", "C5prime_xyz": [ -1.560, 8.783, -0.688 ], "P_xyz": [ -1.682, 8.688, -3.313 ], "form": ".", "ssZp": 3.573, "Dp": 4.654, "splay_angle": 41.273, "splay_distance": 7.111, "splay_ratio": 0.355, "d22": null, "d64": null, "eta": -176.111, "theta": -173.117, "eta_prime": -170.237, "theta_prime": -175.408, "eta_base": -113.073, "theta_base": -172.205, "v0": 0.332, "v1": -22.727, "v2": 35.161, "v3": -35.890, "v4": 22.464, "amplitude": 36.984, "phase_angle": 18.064, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.137, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 131.156, 199.478, 121.240 ], "x_axis": [ 0.755, 0.435, 0.490 ], "y_axis": [ -0.400, 0.898, -0.180 ], "z_axis": [ -0.519, -0.060, 0.853 ], "quaternion": [ 0.936, -0.032, -0.270, 0.223 ] } }, { "index": 1742, "index_chain": 45, "chain_name": "z", "nt_resnum": 164, "nt_name": "U", "nt_code": "U", "nt_id": "///z/164", "linked_nts": [ "///z/163", "///z/165" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -73.783, "beta": 118.368, "gamma": 157.564, "delta": 80.203, "epsilon": -116.353, "zeta": -101.003, "epsilon_zeta": -15.350, "bb_type": "--", "chi": -136.164, "glyco_bond": "anti", "C5prime_xyz": [ -1.600, 8.690, -0.930 ], "P_xyz": [ -2.139, 9.680, -3.308 ], "form": ".", "ssZp": 2.999, "Dp": 4.711, "splay_angle": 27.270, "splay_distance": 4.786, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": -122.762, "theta": -159.497, "eta_prime": -120.447, "theta_prime": -150.715, "eta_base": -112.304, "theta_base": -121.204, "v0": 0.955, "v1": -23.335, "v2": 35.534, "v3": -35.961, "v4": 22.149, "amplitude": 37.194, "phase_angle": 17.184, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.054, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 128.405, 198.686, 127.750 ], "x_axis": [ -0.230, 0.326, 0.917 ], "y_axis": [ -0.705, 0.594, -0.388 ], "z_axis": [ -0.671, -0.735, 0.093 ], "quaternion": [ 0.604, 0.144, -0.658, 0.427 ] } }, { "index": 1743, "index_chain": 46, "chain_name": "z", "nt_resnum": 165, "nt_name": "A", "nt_code": "A", "nt_id": "///z/165", "linked_nts": [ "///z/164", "///z/166" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart", "alpha": 100.731, "beta": -103.071, "gamma": -144.970, "delta": 82.679, "epsilon": -85.907, "zeta": 88.399, "epsilon_zeta": 185.693, "bb_type": "--", "chi": -161.566, "glyco_bond": "anti", "C5prime_xyz": [ -1.454, 8.727, 0.591 ], "P_xyz": [ -1.352, 10.136, -1.621 ], "form": ".", "ssZp": 3.865, "Dp": 4.569, "splay_angle": 96.297, "splay_distance": 15.189, "splay_ratio": 0.745, "d22": null, "d64": null, "eta": -165.226, "theta": 46.196, "eta_prime": -150.331, "theta_prime": 48.510, "eta_base": -110.977, "theta_base": 64.103, "v0": 0.338, "v1": -22.218, "v2": 34.339, "v3": -35.074, "v4": 21.952, "amplitude": 36.119, "phase_angle": 18.064, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 125.393, 198.715, 131.469 ], "x_axis": [ -0.443, 0.648, 0.620 ], "y_axis": [ -0.658, 0.234, -0.716 ], "z_axis": [ -0.608, -0.725, 0.323 ], "quaternion": [ 0.528, 0.005, -0.582, 0.619 ] } }, { "index": 1744, "index_chain": 47, "chain_name": "z", "nt_resnum": 166, "nt_name": "C", "nt_code": "C", "nt_id": "///z/166", "linked_nts": [ "///z/165", "///z/167" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate,splayed-apart", "alpha": 72.833, "beta": -143.370, "gamma": -154.016, "delta": 82.374, "epsilon": -125.816, "zeta": -91.141, "epsilon_zeta": -34.675, "bb_type": "--", "chi": -166.403, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.711, 0.913 ], "P_xyz": [ -0.359, 10.615, -0.630 ], "form": "A", "ssZp": 4.479, "Dp": 4.690, "splay_angle": 23.871, "splay_distance": 3.905, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": -172.263, "theta": -148.249, "eta_prime": -171.620, "theta_prime": -152.863, "eta_base": -161.698, "theta_base": -126.339, "v0": 1.878, "v1": -23.372, "v2": 34.763, "v3": -34.629, "v4": 20.667, "amplitude": 36.108, "phase_angle": 15.686, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5n", "suiteness": 0.176, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 125.287, 195.616, 116.600 ], "x_axis": [ 0.330, -0.904, 0.272 ], "y_axis": [ -0.652, -0.010, 0.758 ], "z_axis": [ -0.683, -0.427, -0.593 ], "quaternion": [ 0.426, 0.695, -0.560, -0.148 ] } }, { "index": 1745, "index_chain": 48, "chain_name": "z", "nt_resnum": 167, "nt_name": "A", "nt_code": "A", "nt_id": "///z/167", "linked_nts": [ "///z/166", "///z/168" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 174.774, "beta": -161.594, "gamma": 143.509, "delta": 82.907, "epsilon": -165.805, "zeta": -78.375, "epsilon_zeta": -87.430, "bb_type": "BI", "chi": -165.119, "glyco_bond": "anti", "C5prime_xyz": [ -1.340, 8.663, 0.861 ], "P_xyz": [ 0.805, 9.565, -0.340 ], "form": "A", "ssZp": 4.372, "Dp": 4.438, "splay_angle": 21.627, "splay_distance": 3.645, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 132.079, "theta": -141.041, "eta_prime": 161.116, "theta_prime": -153.765, "eta_base": -156.608, "theta_base": -136.478, "v0": 1.753, "v1": -22.683, "v2": 33.776, "v3": -33.756, "v4": 20.214, "amplitude": 35.113, "phase_angle": 15.861, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 124.155, 192.547, 114.467 ], "x_axis": [ 0.258, -0.316, 0.913 ], "y_axis": [ -0.847, 0.381, 0.371 ], "z_axis": [ -0.465, -0.869, -0.169 ], "quaternion": [ 0.606, 0.511, -0.569, 0.219 ] } }, { "index": 1746, "index_chain": 49, "chain_name": "z", "nt_resnum": 168, "nt_name": "C", "nt_code": "C", "nt_id": "///z/168", "linked_nts": [ "///z/167", "///z/169" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 171.465, "beta": -157.174, "gamma": 157.579, "delta": 82.195, "epsilon": -107.624, "zeta": -89.772, "epsilon_zeta": -17.852, "bb_type": "--", "chi": -174.746, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.596, 1.400 ], "P_xyz": [ 0.717, 9.809, 0.406 ], "form": ".", "ssZp": 4.502, "Dp": 4.653, "splay_angle": 25.727, "splay_distance": 4.820, "splay_ratio": 0.238, "d22": 4.495, "d64": 5.607, "eta": 168.088, "theta": -123.109, "eta_prime": -179.804, "theta_prime": -134.157, "eta_base": -146.218, "theta_base": -117.080, "v0": 1.081, "v1": -22.490, "v2": 34.139, "v3": -34.487, "v4": 21.070, "amplitude": 35.686, "phase_angle": 16.932, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.257, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 124.683, 189.010, 113.757 ], "x_axis": [ -0.185, -0.055, 0.981 ], "y_axis": [ -0.908, 0.393, -0.149 ], "z_axis": [ -0.377, -0.918, -0.123 ], "quaternion": [ 0.521, 0.369, -0.652, 0.409 ] } }, { "index": 1747, "index_chain": 50, "chain_name": "z", "nt_resnum": 169, "nt_name": "C", "nt_code": "C", "nt_id": "///z/169", "linked_nts": [ "///z/168", "///z/170" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 79.948, "beta": -132.817, "gamma": -119.942, "delta": 82.066, "epsilon": -142.095, "zeta": -81.229, "epsilon_zeta": -60.866, "bb_type": "BI", "chi": -172.983, "glyco_bond": "anti", "C5prime_xyz": [ -1.072, 8.487, 1.316 ], "P_xyz": [ -0.669, 10.968, 0.577 ], "form": "A", "ssZp": 4.690, "Dp": 4.718, "splay_angle": 24.236, "splay_distance": 3.697, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 168.303, "theta": 162.153, "eta_prime": -179.151, "theta_prime": 177.698, "eta_base": -140.089, "theta_base": -148.404, "v0": 6.020, "v1": -27.234, "v2": 36.965, "v3": -34.518, "v4": 17.974, "amplitude": 37.490, "phase_angle": 9.598, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 124.832, 184.598, 115.691 ], "x_axis": [ -0.550, 0.156, 0.821 ], "y_axis": [ -0.740, 0.365, -0.565 ], "z_axis": [ -0.388, -0.918, -0.085 ], "quaternion": [ -0.427, -0.206, 0.707, -0.524 ] } }, { "index": 1748, "index_chain": 51, "chain_name": "z", "nt_resnum": 170, "nt_name": "G", "nt_code": "G", "nt_id": "///z/170", "linked_nts": [ "///z/169", "///z/171" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -59.361, "beta": 158.888, "gamma": 59.779, "delta": 81.395, "epsilon": -160.961, "zeta": -85.276, "epsilon_zeta": -75.684, "bb_type": "BI", "chi": -177.329, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.466, 1.533 ], "P_xyz": [ 1.156, 8.709, 1.657 ], "form": "A", "ssZp": 4.573, "Dp": 4.577, "splay_angle": 25.283, "splay_distance": 3.954, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 165.733, "theta": -128.874, "eta_prime": -176.463, "theta_prime": -137.034, "eta_base": -134.232, "theta_base": -109.675, "v0": 4.139, "v1": -25.872, "v2": 36.571, "v3": -35.188, "v4": 19.579, "amplitude": 37.445, "phase_angle": 12.405, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.808, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 124.577, 181.023, 116.598 ], "x_axis": [ -0.838, 0.330, 0.435 ], "y_axis": [ -0.360, 0.266, -0.894 ], "z_axis": [ -0.411, -0.906, -0.104 ], "quaternion": [ -0.285, -0.010, 0.743, -0.606 ] } }, { "index": 1749, "index_chain": 52, "chain_name": "z", "nt_resnum": 171, "nt_name": "G", "nt_code": "G", "nt_id": "///z/171", "linked_nts": [ "///z/170", "///z/172" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop", "alpha": 174.907, "beta": -145.998, "gamma": 150.305, "delta": 82.080, "epsilon": -124.467, "zeta": -49.506, "epsilon_zeta": -74.962, "bb_type": "--", "chi": 168.969, "glyco_bond": "anti", "C5prime_xyz": [ -1.557, 8.083, 2.247 ], "P_xyz": [ 0.812, 9.062, 1.705 ], "form": ".", "ssZp": 4.716, "Dp": 4.760, "splay_angle": 38.438, "splay_distance": 5.762, "splay_ratio": 0.331, "d22": null, "d64": null, "eta": 161.075, "theta": -110.484, "eta_prime": 178.897, "theta_prime": -112.243, "eta_base": -129.194, "theta_base": -56.313, "v0": 4.993, "v1": -26.286, "v2": 36.413, "v3": -34.525, "v4": 18.637, "amplitude": 37.101, "phase_angle": 11.049, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.034, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 122.731, 178.056, 118.448 ], "x_axis": [ -0.864, 0.455, -0.214 ], "y_axis": [ 0.258, 0.037, -0.965 ], "z_axis": [ -0.432, -0.890, -0.150 ], "quaternion": [ -0.076, 0.249, 0.716, -0.648 ] } }, { "index": 1750, "index_chain": 53, "chain_name": "z", "nt_resnum": 172, "nt_name": "A", "nt_code": "A", "nt_id": "///z/172", "linked_nts": [ "///z/171", "///z/173" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop", "alpha": -77.523, "beta": 178.051, "gamma": 53.715, "delta": 83.318, "epsilon": -157.517, "zeta": -80.046, "epsilon_zeta": -77.470, "bb_type": "BI", "chi": -168.377, "glyco_bond": "anti", "C5prime_xyz": [ -1.284, 8.579, 1.052 ], "P_xyz": [ 1.262, 8.797, 1.659 ], "form": "A", "ssZp": 4.504, "Dp": 4.550, "splay_angle": 26.184, "splay_distance": 3.997, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 148.241, "theta": -156.417, "eta_prime": -177.464, "theta_prime": -155.132, "eta_base": -86.851, "theta_base": -139.470, "v0": 3.655, "v1": -24.403, "v2": 34.693, "v3": -33.563, "v4": 18.880, "amplitude": 35.586, "phase_angle": 12.864, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.478, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 118.181, 177.290, 114.996 ], "x_axis": [ 0.063, 0.227, -0.972 ], "y_axis": [ 0.901, -0.431, -0.042 ], "z_axis": [ -0.429, -0.873, -0.232 ], "quaternion": [ 0.316, 0.657, 0.429, -0.533 ] } }, { "index": 1751, "index_chain": 54, "chain_name": "z", "nt_resnum": 173, "nt_name": "A", "nt_code": "A", "nt_id": "///z/173", "linked_nts": [ "///z/172", "///z/174" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -63.668, "beta": 175.159, "gamma": 55.133, "delta": 84.428, "epsilon": -114.528, "zeta": -117.941, "epsilon_zeta": 3.414, "bb_type": "--", "chi": -167.360, "glyco_bond": "anti", "C5prime_xyz": [ -1.174, 8.567, 1.007 ], "P_xyz": [ 1.408, 8.684, 1.479 ], "form": ".", "ssZp": 4.448, "Dp": 4.718, "splay_angle": 28.596, "splay_distance": 4.427, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": -176.800, "theta": -154.438, "eta_prime": -172.296, "theta_prime": -146.527, "eta_base": -152.243, "theta_base": -121.253, "v0": 4.204, "v1": -24.515, "v2": 34.382, "v3": -32.936, "v4": 18.152, "amplitude": 35.142, "phase_angle": 11.936, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.885, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 114.965, 174.924, 115.178 ], "x_axis": [ 0.466, 0.047, -0.883 ], "y_axis": [ 0.798, -0.454, 0.397 ], "z_axis": [ -0.383, -0.890, -0.249 ], "quaternion": [ 0.437, 0.737, 0.287, -0.430 ] } }, { "index": 1752, "index_chain": 55, "chain_name": "z", "nt_resnum": 174, "nt_name": "U", "nt_code": "U", "nt_id": "///z/174", "linked_nts": [ "///z/173", null ], "nt_type": "RNA", "dbn": "(", "is_broken": true, "summary": "break,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end", "alpha": -44.774, "beta": 131.558, "gamma": 56.691, "delta": 82.081, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -163.239, "glyco_bond": "anti", "C5prime_xyz": [ -1.217, 8.632, 0.733 ], "P_xyz": [ 1.294, 8.386, 0.017 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 4.702, "v1": -26.110, "v2": 36.453, "v3": -34.753, "v4": 18.964, "amplitude": 37.205, "phase_angle": 11.539, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.500, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 112.910, 171.212, 113.917 ], "x_axis": [ 0.798, -0.147, -0.585 ], "y_axis": [ 0.481, -0.430, 0.764 ], "z_axis": [ -0.364, -0.891, -0.272 ], "quaternion": [ 0.523, 0.790, 0.106, -0.300 ] } }, { "index": 1753, "index_chain": 56, "chain_name": "z", "nt_resnum": 224, "nt_name": "G", "nt_code": "G", "nt_id": "///z/224", "linked_nts": [ null, "///z/225" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": null, "beta": 127.025, "gamma": 63.412, "delta": 82.566, "epsilon": -140.071, "zeta": -85.591, "epsilon_zeta": -54.480, "bb_type": "BI", "chi": -170.142, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.615, 1.126 ], "P_xyz": [ 1.126, 8.513, 0.348 ], "form": "A", "ssZp": 4.616, "Dp": 4.683, "splay_angle": 18.657, "splay_distance": 2.843, "splay_ratio": 0.162, "d22": null, "d64": null, "eta": null, "theta": -140.391, "eta_prime": null, "theta_prime": -146.224, "eta_base": null, "theta_base": -119.644, "v0": 3.379, "v1": -24.719, "v2": 35.421, "v3": -34.478, "v4": 19.637, "amplitude": 36.415, "phase_angle": 13.423, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 111.139, 167.937, 113.329 ], "x_axis": [ 0.939, -0.343, 0.016 ], "y_axis": [ -0.021, -0.104, -0.994 ], "z_axis": [ 0.343, 0.934, -0.105 ], "quaternion": [ 0.658, -0.733, 0.124, -0.122 ] } }, { "index": 1754, "index_chain": 57, "chain_name": "z", "nt_resnum": 225, "nt_name": "A", "nt_code": "A", "nt_id": "///z/225", "linked_nts": [ "///z/224", "///z/226" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end", "alpha": -61.789, "beta": 162.489, "gamma": 59.865, "delta": 85.178, "epsilon": -155.218, "zeta": -83.161, "epsilon_zeta": -72.058, "bb_type": "BI", "chi": -145.199, "glyco_bond": "anti", "C5prime_xyz": [ -1.087, 8.629, -0.320 ], "P_xyz": [ 1.476, 8.559, -0.903 ], "form": ".", "ssZp": 3.966, "Dp": 4.577, "splay_angle": 25.098, "splay_distance": 3.966, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 168.964, "theta": -151.863, "eta_prime": -175.421, "theta_prime": -154.552, "eta_base": -129.341, "theta_base": -139.581, "v0": 5.514, "v1": -25.352, "v2": 34.476, "v3": -32.259, "v4": 16.921, "amplitude": 34.986, "phase_angle": 9.793, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.763, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 112.773, 170.213, 113.812 ], "x_axis": [ 0.798, -0.191, -0.572 ], "y_axis": [ -0.465, 0.408, -0.786 ], "z_axis": [ 0.383, 0.893, 0.236 ], "quaternion": [ 0.781, -0.537, 0.306, 0.088 ] } }, { "index": 1755, "index_chain": 58, "chain_name": "z", "nt_resnum": 226, "nt_name": "U", "nt_code": "U", "nt_id": "///z/226", "linked_nts": [ "///z/225", "///z/227" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -55.952, "beta": 161.575, "gamma": 58.797, "delta": 83.783, "epsilon": -166.362, "zeta": -80.722, "epsilon_zeta": -85.640, "bb_type": "BI", "chi": -147.943, "glyco_bond": "anti", "C5prime_xyz": [ -1.232, 8.712, -0.168 ], "P_xyz": [ 1.351, 8.805, -0.646 ], "form": ".", "ssZp": 4.068, "Dp": 4.462, "splay_angle": 29.405, "splay_distance": 4.803, "splay_ratio": 0.255, "d22": 4.701, "d64": 5.106, "eta": 172.609, "theta": -125.796, "eta_prime": -172.168, "theta_prime": -134.116, "eta_base": -143.087, "theta_base": -113.044, "v0": 3.476, "v1": -23.960, "v2": 34.214, "v3": -33.166, "v4": 18.765, "amplitude": 35.127, "phase_angle": 13.096, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.778, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 114.561, 173.476, 115.183 ], "x_axis": [ 0.532, -0.022, -0.846 ], "y_axis": [ -0.716, 0.521, -0.464 ], "z_axis": [ 0.451, 0.854, 0.261 ], "quaternion": [ 0.761, -0.433, 0.426, 0.228 ] } }, { "index": 1756, "index_chain": 59, "chain_name": "z", "nt_resnum": 227, "nt_name": "U", "nt_code": "U", "nt_id": "///z/227", "linked_nts": [ "///z/226", "///z/228" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,non-stack,canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,cap-donor", "alpha": 166.435, "beta": -145.068, "gamma": 163.737, "delta": 81.456, "epsilon": -112.933, "zeta": -162.500, "epsilon_zeta": 49.567, "bb_type": "BII", "chi": -166.272, "glyco_bond": "anti", "C5prime_xyz": [ -1.310, 8.625, 0.913 ], "P_xyz": [ 0.501, 9.625, -0.695 ], "form": ".", "ssZp": 4.437, "Dp": 4.763, "splay_angle": 52.302, "splay_distance": 7.817, "splay_ratio": 0.442, "d22": 6.784, "d64": 7.390, "eta": 172.778, "theta": 134.777, "eta_prime": -170.251, "theta_prime": 141.239, "eta_base": -130.632, "theta_base": 140.883, "v0": 3.726, "v1": -25.464, "v2": 36.348, "v3": -35.185, "v4": 19.850, "amplitude": 37.305, "phase_angle": 13.009, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.467, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 118.047, 176.769, 114.907 ], "x_axis": [ 0.061, 0.261, -0.963 ], "y_axis": [ -0.868, 0.490, 0.077 ], "z_axis": [ 0.492, 0.832, 0.257 ], "quaternion": [ 0.672, -0.281, 0.541, 0.420 ] } }, { "index": 1757, "index_chain": 60, "chain_name": "z", "nt_resnum": 228, "nt_name": "U", "nt_code": "U", "nt_id": "///z/228", "linked_nts": [ "///z/227", "///z/229" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,splayed-apart", "alpha": -62.070, "beta": 123.481, "gamma": 55.901, "delta": 81.215, "epsilon": -178.952, "zeta": 151.654, "epsilon_zeta": 29.394, "bb_type": "--", "chi": -154.785, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.759, 0.204 ], "P_xyz": [ 0.994, 8.458, -0.714 ], "form": ".", "ssZp": 4.257, "Dp": 4.379, "splay_angle": 134.969, "splay_distance": 16.963, "splay_ratio": 0.924, "d22": null, "d64": null, "eta": 163.235, "theta": 50.861, "eta_prime": 169.555, "theta_prime": 0.902, "eta_base": 162.854, "theta_base": -149.490, "v0": 1.705, "v1": -23.750, "v2": 35.542, "v3": -35.509, "v4": 21.308, "amplitude": 36.974, "phase_angle": 15.998, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.185, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 119.013, 177.933, 122.577 ], "x_axis": [ 0.451, 0.075, -0.890 ], "y_axis": [ -0.653, 0.707, -0.271 ], "z_axis": [ 0.609, 0.703, 0.368 ], "quaternion": [ 0.795, -0.306, 0.471, 0.229 ] } }, { "index": 1758, "index_chain": 61, "chain_name": "z", "nt_resnum": 229, "nt_name": "G", "nt_code": "G", "nt_id": "///z/229", "linked_nts": [ "///z/228", "///z/230" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart", "alpha": -50.627, "beta": -129.146, "gamma": 49.955, "delta": 80.678, "epsilon": 179.827, "zeta": -84.118, "epsilon_zeta": -96.055, "bb_type": "BI", "chi": -146.132, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.823, -0.315 ], "P_xyz": [ 0.787, 9.475, 0.819 ], "form": "A", "ssZp": 4.015, "Dp": 4.341, "splay_angle": 24.637, "splay_distance": 4.109, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": -108.379, "theta": -146.110, "eta_prime": -67.461, "theta_prime": -148.087, "eta_base": 71.895, "theta_base": -128.743, "v0": 0.783, "v1": -22.930, "v2": 35.131, "v3": -35.634, "v4": 21.987, "amplitude": 36.818, "phase_angle": 17.412, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 118.604, 193.027, 130.305 ], "x_axis": [ -0.010, -0.650, 0.760 ], "y_axis": [ -0.397, -0.695, -0.600 ], "z_axis": [ 0.918, -0.308, -0.251 ], "quaternion": [ -0.105, 0.696, -0.376, 0.603 ] } }, { "index": 1759, "index_chain": 62, "chain_name": "z", "nt_resnum": 230, "nt_name": "G", "nt_code": "G", "nt_id": "///z/230", "linked_nts": [ "///z/229", "///z/231" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": 158.434, "beta": -142.517, "gamma": 171.083, "delta": 83.024, "epsilon": -149.676, "zeta": -63.362, "epsilon_zeta": -86.313, "bb_type": "BI", "chi": -178.853, "glyco_bond": "anti", "C5prime_xyz": [ -1.496, 8.521, 1.617 ], "P_xyz": [ 0.492, 9.825, 0.512 ], "form": "A", "ssZp": 4.481, "Dp": 4.532, "splay_angle": 23.689, "splay_distance": 3.780, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 171.852, "theta": -152.112, "eta_prime": -173.031, "theta_prime": -152.896, "eta_base": -139.231, "theta_base": -128.159, "v0": 0.705, "v1": -21.770, "v2": 33.349, "v3": -33.887, "v4": 20.944, "amplitude": 34.967, "phase_angle": 17.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.574, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 122.686, 192.701, 130.660 ], "x_axis": [ -0.217, -0.850, 0.481 ], "y_axis": [ -0.383, -0.379, -0.842 ], "z_axis": [ 0.898, -0.367, -0.243 ], "quaternion": [ -0.201, 0.593, -0.520, 0.582 ] } }, { "index": 1760, "index_chain": 63, "chain_name": "z", "nt_resnum": 231, "nt_name": "G", "nt_code": "G", "nt_id": "///z/231", "linked_nts": [ "///z/230", "///z/232" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -78.051, "beta": -154.258, "gamma": 40.463, "delta": 83.936, "epsilon": -134.810, "zeta": -108.633, "epsilon_zeta": -26.177, "bb_type": "--", "chi": -144.337, "glyco_bond": "anti", "C5prime_xyz": [ -1.110, 8.715, -0.352 ], "P_xyz": [ 1.304, 9.303, 0.496 ], "form": ".", "ssZp": 3.756, "Dp": 4.678, "splay_angle": 32.713, "splay_distance": 5.214, "splay_ratio": 0.284, "d22": null, "d64": null, "eta": 169.167, "theta": -158.738, "eta_prime": 177.779, "theta_prime": -141.603, "eta_base": -149.419, "theta_base": -117.872, "v0": 4.186, "v1": -24.493, "v2": 34.414, "v3": -32.968, "v4": 18.178, "amplitude": 35.180, "phase_angle": 11.976, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.420, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 126.138, 191.562, 131.696 ], "x_axis": [ -0.533, -0.836, -0.131 ], "y_axis": [ -0.074, 0.200, -0.977 ], "z_axis": [ 0.843, -0.511, -0.168 ], "quaternion": [ 0.353, -0.330, 0.689, -0.540 ] } }, { "index": 1761, "index_chain": 64, "chain_name": "z", "nt_resnum": 232, "nt_name": "C", "nt_code": "C", "nt_id": "///z/232", "linked_nts": [ "///z/231", "///z/233" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": -27.663, "beta": 131.797, "gamma": 78.115, "delta": 147.235, "epsilon": -153.935, "zeta": -141.173, "epsilon_zeta": -12.763, "bb_type": "--", "chi": -123.942, "glyco_bond": "anti", "C5prime_xyz": [ -2.282, 8.637, -0.978 ], "P_xyz": [ 0.258, 8.664, -1.595 ], "form": ".", "ssZp": 2.057, "Dp": 2.037, "splay_angle": 64.609, "splay_distance": 10.326, "splay_ratio": 0.535, "d22": null, "d64": null, "eta": -177.445, "theta": -128.481, "eta_prime": -124.519, "theta_prime": 146.718, "eta_base": -110.995, "theta_base": 96.275, "v0": -24.210, "v1": 38.234, "v2": -36.771, "v3": 23.742, "v4": 0.087, "amplitude": 38.871, "phase_angle": 161.081, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 129.857, 188.168, 130.337 ], "x_axis": [ -0.595, -0.657, -0.463 ], "y_axis": [ 0.151, 0.475, -0.867 ], "z_axis": [ 0.789, -0.586, -0.183 ], "quaternion": [ 0.417, -0.168, 0.750, -0.484 ] } }, { "index": 1762, "index_chain": 65, "chain_name": "z", "nt_resnum": 233, "nt_name": "G", "nt_code": "G", "nt_id": "///z/233", "linked_nts": [ "///z/232", "///z/234" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 43.323, "beta": -153.109, "gamma": 173.981, "delta": 81.721, "epsilon": -140.451, "zeta": -105.831, "epsilon_zeta": -34.620, "bb_type": "BI", "chi": -133.178, "glyco_bond": "anti", "C5prime_xyz": [ -1.697, 8.712, -1.087 ], "P_xyz": [ -0.907, 9.207, -3.539 ], "form": ".", "ssZp": 3.203, "Dp": 4.598, "splay_angle": 107.855, "splay_distance": 14.681, "splay_ratio": 0.810, "d22": null, "d64": null, "eta": 72.501, "theta": -164.414, "eta_prime": 65.304, "theta_prime": -127.776, "eta_base": 38.145, "theta_base": -93.612, "v0": -1.203, "v1": -20.972, "v2": 33.836, "v3": -35.488, "v4": 23.148, "amplitude": 36.116, "phase_angle": 20.467, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.103, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 130.095, 197.985, 133.531 ], "x_axis": [ -0.844, -0.139, -0.517 ], "y_axis": [ 0.454, -0.698, -0.553 ], "z_axis": [ -0.284, -0.702, 0.653 ], "quaternion": [ -0.166, -0.224, -0.351, 0.894 ] } }, { "index": 1763, "index_chain": 66, "chain_name": "z", "nt_resnum": 234, "nt_name": "U", "nt_code": "U", "nt_id": "///z/234", "linked_nts": [ "///z/233", "///z/235" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,splayed-apart", "alpha": -133.114, "beta": -105.090, "gamma": 168.769, "delta": 148.319, "epsilon": -135.640, "zeta": 129.436, "epsilon_zeta": 94.924, "bb_type": "--", "chi": -134.619, "glyco_bond": "anti", "C5prime_xyz": [ -1.816, 8.674, -0.411 ], "P_xyz": [ 0.407, 8.171, -1.716 ], "form": ".", "ssZp": 1.572, "Dp": 1.625, "splay_angle": 30.159, "splay_distance": 4.900, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": -111.592, "theta": 150.680, "eta_prime": -94.266, "theta_prime": 79.353, "eta_base": -110.357, "theta_base": 46.653, "v0": -20.537, "v1": 35.459, "v2": -36.006, "v3": 25.074, "v4": -3.066, "amplitude": 37.126, "phase_angle": 165.890, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 129.721, 184.515, 127.705 ], "x_axis": [ 0.388, 0.338, -0.857 ], "y_axis": [ 0.737, 0.445, 0.509 ], "z_axis": [ 0.554, -0.829, -0.076 ], "quaternion": [ 0.663, 0.505, 0.532, -0.150 ] } }, { "index": 1764, "index_chain": 67, "chain_name": "z", "nt_resnum": 235, "nt_name": "G", "nt_code": "G", "nt_id": "///z/235", "linked_nts": [ "///z/234", "///z/236" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-acceptor", "alpha": 62.034, "beta": -110.482, "gamma": 179.656, "delta": 82.487, "epsilon": 151.472, "zeta": -80.090, "epsilon_zeta": -128.438, "bb_type": "BI", "chi": -114.701, "glyco_bond": "anti", "C5prime_xyz": [ -1.785, 8.194, -2.004 ], "P_xyz": [ -1.527, 7.125, -4.390 ], "form": "B", "ssZp": 2.669, "Dp": 3.986, "splay_angle": 22.257, "splay_distance": 3.696, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 156.242, "theta": 178.726, "eta_prime": 158.045, "theta_prime": 167.784, "eta_base": 134.065, "theta_base": 174.471, "v0": 4.642, "v1": -25.243, "v2": 35.044, "v3": -33.317, "v4": 18.187, "amplitude": 35.741, "phase_angle": 11.334, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.014, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 129.666, 188.623, 130.375 ], "x_axis": [ -0.520, -0.751, -0.406 ], "y_axis": [ -0.066, -0.439, 0.896 ], "z_axis": [ -0.852, 0.493, 0.179 ], "quaternion": [ -0.234, -0.430, 0.475, 0.731 ] } }, { "index": 1765, "index_chain": 68, "chain_name": "z", "nt_resnum": 236, "nt_name": "C", "nt_code": "C", "nt_id": "///z/236", "linked_nts": [ "///z/235", "///z/237" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 166.998, "beta": -140.971, "gamma": 171.338, "delta": 150.775, "epsilon": -164.558, "zeta": -96.103, "epsilon_zeta": -68.456, "bb_type": "BI", "chi": -129.544, "glyco_bond": "anti", "C5prime_xyz": [ -1.879, 8.702, -0.646 ], "P_xyz": [ 0.320, 9.009, -2.064 ], "form": ".", "ssZp": 1.889, "Dp": 2.039, "splay_angle": 23.558, "splay_distance": 4.205, "splay_ratio": 0.213, "d22": 4.556, "d64": 4.357, "eta": 174.450, "theta": -95.357, "eta_prime": -140.664, "theta_prime": -158.942, "eta_base": -133.995, "theta_base": -117.946, "v0": -21.587, "v1": 37.587, "v2": -38.291, "v3": 26.708, "v4": -3.435, "amplitude": 39.436, "phase_angle": 166.161, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.003, "origin": [ 126.981, 190.991, 131.294 ], "x_axis": [ -0.466, -0.867, -0.175 ], "y_axis": [ -0.041, -0.177, 0.983 ], "z_axis": [ -0.884, 0.466, 0.046 ], "quaternion": [ -0.318, -0.407, 0.558, 0.650 ] } }, { "index": 1766, "index_chain": 69, "chain_name": "z", "nt_resnum": 237, "nt_name": "C", "nt_code": "C", "nt_id": "///z/237", "linked_nts": [ "///z/236", "///z/238" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": 142.110, "beta": 173.132, "gamma": 157.172, "delta": 78.887, "epsilon": -153.819, "zeta": -100.361, "epsilon_zeta": -53.458, "bb_type": "BI", "chi": -157.557, "glyco_bond": "anti", "C5prime_xyz": [ -1.310, 8.864, 0.370 ], "P_xyz": [ -0.010, 10.400, -1.312 ], "form": "A", "ssZp": 4.334, "Dp": 4.571, "splay_angle": 19.852, "splay_distance": 3.305, "splay_ratio": 0.176, "d22": 4.372, "d64": 4.524, "eta": 118.225, "theta": -163.837, "eta_prime": 140.924, "theta_prime": -166.857, "eta_base": -158.307, "theta_base": -148.458, "v0": -0.149, "v1": -22.607, "v2": 35.579, "v3": -36.633, "v4": 23.168, "amplitude": 37.591, "phase_angle": 18.831, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 123.066, 192.288, 130.477 ], "x_axis": [ -0.280, -0.831, 0.481 ], "y_axis": [ 0.339, 0.383, 0.859 ], "z_axis": [ -0.898, 0.404, 0.174 ], "quaternion": [ 0.565, 0.202, -0.610, -0.517 ] } }, { "index": 1767, "index_chain": 70, "chain_name": "z", "nt_resnum": 238, "nt_name": "C", "nt_code": "C", "nt_id": "///z/238", "linked_nts": [ "///z/237", "///z/239" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 151.768, "beta": -137.762, "gamma": 169.630, "delta": 81.658, "epsilon": -141.752, "zeta": -61.769, "epsilon_zeta": -79.983, "bb_type": "BI", "chi": -168.583, "glyco_bond": "anti", "C5prime_xyz": [ -1.350, 8.673, 1.055 ], "P_xyz": [ 0.434, 9.702, -0.565 ], "form": ".", "ssZp": 4.574, "Dp": 4.651, "splay_angle": 33.683, "splay_distance": 5.272, "splay_ratio": 0.291, "d22": 4.130, "d64": 4.004, "eta": 159.003, "theta": -142.808, "eta_prime": 175.878, "theta_prime": -145.982, "eta_base": -152.115, "theta_base": -112.439, "v0": 2.130, "v1": -23.937, "v2": 35.433, "v3": -35.202, "v4": 20.850, "amplitude": 36.748, "phase_angle": 15.374, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.269, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 119.811, 192.364, 129.909 ], "x_axis": [ -0.023, -0.647, 0.763 ], "y_axis": [ 0.218, 0.741, 0.635 ], "z_axis": [ -0.976, 0.181, 0.124 ], "quaternion": [ 0.679, 0.167, -0.640, -0.318 ] } }, { "index": 1768, "index_chain": 71, "chain_name": "z", "nt_resnum": 239, "nt_name": "C", "nt_code": "C", "nt_id": "///z/239", "linked_nts": [ "///z/238", "///z/240" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -73.111, "beta": -160.138, "gamma": 38.535, "delta": 81.649, "epsilon": -145.807, "zeta": -72.091, "epsilon_zeta": -73.715, "bb_type": "BI", "chi": -172.062, "glyco_bond": "anti", "C5prime_xyz": [ -1.214, 8.582, 1.255 ], "P_xyz": [ 0.910, 8.808, 2.782 ], "form": "A", "ssZp": 4.608, "Dp": 4.650, "splay_angle": 23.851, "splay_distance": 3.819, "splay_ratio": 0.210, "d22": 4.476, "d64": 4.698, "eta": 162.230, "theta": -146.624, "eta_prime": 175.350, "theta_prime": -139.795, "eta_base": -135.579, "theta_base": -112.348, "v0": 3.503, "v1": -24.977, "v2": 35.830, "v3": -34.780, "v4": 19.727, "amplitude": 36.814, "phase_angle": 13.280, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.470, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 115.236, 191.212, 132.260 ], "x_axis": [ 0.691, -0.046, 0.721 ], "y_axis": [ 0.325, 0.912, -0.252 ], "z_axis": [ -0.646, 0.409, 0.645 ], "quaternion": [ 0.901, -0.183, -0.379, -0.103 ] } }, { "index": 1769, "index_chain": 72, "chain_name": "z", "nt_resnum": 240, "nt_name": "C", "nt_code": "C", "nt_id": "///z/240", "linked_nts": [ "///z/239", "///z/241" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -59.939, "beta": 176.034, "gamma": 49.563, "delta": 79.703, "epsilon": -151.166, "zeta": -78.655, "epsilon_zeta": -72.511, "bb_type": "BI", "chi": -162.947, "glyco_bond": "anti", "C5prime_xyz": [ -1.433, 8.785, 0.692 ], "P_xyz": [ 1.093, 9.310, 1.147 ], "form": "A", "ssZp": 4.479, "Dp": 4.607, "splay_angle": 18.611, "splay_distance": 3.023, "splay_ratio": 0.165, "d22": null, "d64": null, "eta": 169.107, "theta": -153.909, "eta_prime": -177.123, "theta_prime": -152.974, "eta_base": -140.171, "theta_base": -138.933, "v0": 0.911, "v1": -23.538, "v2": 35.983, "v3": -36.463, "v4": 22.394, "amplitude": 37.680, "phase_angle": 17.260, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.953, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 112.979, 190.830, 135.318 ], "x_axis": [ 0.793, 0.417, 0.443 ], "y_axis": [ -0.104, 0.811, -0.576 ], "z_axis": [ -0.600, 0.411, 0.687 ], "quaternion": [ 0.907, -0.272, -0.288, 0.144 ] } }, { "index": 1770, "index_chain": 73, "chain_name": "z", "nt_resnum": 241, "nt_name": "G", "nt_code": "G", "nt_id": "///z/241", "linked_nts": [ "///z/240", "///z/242" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.799, "beta": 170.296, "gamma": 48.044, "delta": 80.118, "epsilon": -174.701, "zeta": -86.981, "epsilon_zeta": -87.720, "bb_type": "BI", "chi": -156.183, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.837, 0.284 ], "P_xyz": [ 1.099, 9.394, 0.442 ], "form": "A", "ssZp": 4.278, "Dp": 4.405, "splay_angle": 25.060, "splay_distance": 4.005, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 164.236, "theta": -143.683, "eta_prime": 176.914, "theta_prime": -147.949, "eta_base": -155.707, "theta_base": -123.556, "v0": 0.564, "v1": -22.963, "v2": 35.397, "v3": -36.057, "v4": 22.373, "amplitude": 37.169, "phase_angle": 17.764, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.897, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 111.588, 190.403, 137.968 ], "x_axis": [ 0.730, 0.681, 0.065 ], "y_axis": [ -0.531, 0.624, -0.574 ], "z_axis": [ -0.431, 0.385, 0.816 ], "quaternion": [ 0.890, -0.269, -0.139, 0.340 ] } }, { "index": 1771, "index_chain": 74, "chain_name": "z", "nt_resnum": 242, "nt_name": "C", "nt_code": "C", "nt_id": "///z/242", "linked_nts": [ "///z/241", "///z/243" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": 170.620, "beta": -142.316, "gamma": 157.362, "delta": 82.567, "epsilon": -113.783, "zeta": -61.890, "epsilon_zeta": -51.893, "bb_type": "--", "chi": -174.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.241, 8.524, 1.423 ], "P_xyz": [ 0.933, 9.365, 0.228 ], "form": ".", "ssZp": 4.613, "Dp": 4.727, "splay_angle": 36.765, "splay_distance": 5.699, "splay_ratio": 0.315, "d22": null, "d64": null, "eta": 172.816, "theta": -116.317, "eta_prime": -175.395, "theta_prime": -116.335, "eta_base": -137.372, "theta_base": -62.685, "v0": 3.429, "v1": -24.548, "v2": 35.185, "v3": -34.171, "v4": 19.386, "amplitude": 36.153, "phase_angle": 13.291, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.190, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 111.330, 191.512, 141.807 ], "x_axis": [ 0.355, 0.905, -0.235 ], "y_axis": [ -0.846, 0.203, -0.494 ], "z_axis": [ -0.399, 0.374, 0.837 ], "quaternion": [ 0.774, -0.280, -0.053, 0.566 ] } }, { "index": 1772, "index_chain": 75, "chain_name": "z", "nt_resnum": 243, "nt_name": "A", "nt_code": "A", "nt_id": "///z/243", "linked_nts": [ "///z/242", "///z/244" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,bulge,cap-donor", "alpha": -63.586, "beta": 169.878, "gamma": 45.815, "delta": 81.641, "epsilon": -102.371, "zeta": -168.366, "epsilon_zeta": 65.994, "bb_type": "BII", "chi": -158.223, "glyco_bond": "anti", "C5prime_xyz": [ -1.154, 8.652, 0.424 ], "P_xyz": [ 1.455, 8.872, 0.596 ], "form": ".", "ssZp": 4.041, "Dp": 4.790, "splay_angle": 38.073, "splay_distance": 6.001, "splay_ratio": 0.327, "d22": null, "d64": null, "eta": 159.487, "theta": -173.473, "eta_prime": -173.489, "theta_prime": -179.899, "eta_base": -99.169, "theta_base": 149.877, "v0": 5.057, "v1": -26.559, "v2": 36.820, "v3": -34.924, "v4": 18.856, "amplitude": 37.518, "phase_angle": 11.066, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.372, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 109.708, 196.975, 141.736 ], "x_axis": [ -0.557, 0.358, -0.749 ], "y_axis": [ -0.711, -0.673, 0.206 ], "z_axis": [ -0.430, 0.647, 0.629 ], "quaternion": [ 0.316, -0.349, 0.252, 0.845 ] } }, { "index": 1773, "index_chain": 76, "chain_name": "z", "nt_resnum": 244, "nt_name": "A", "nt_code": "A", "nt_id": "///z/244", "linked_nts": [ "///z/243", "///z/245" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-acceptor", "alpha": 86.767, "beta": -109.219, "gamma": 172.705, "delta": 82.331, "epsilon": 178.621, "zeta": -86.001, "epsilon_zeta": -95.378, "bb_type": "BI", "chi": -147.591, "glyco_bond": "anti", "C5prime_xyz": [ -1.251, 8.707, -0.210 ], "P_xyz": [ -0.165, 8.584, -2.594 ], "form": "A", "ssZp": 4.061, "Dp": 4.355, "splay_angle": 20.933, "splay_distance": 3.347, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 138.291, "theta": -147.382, "eta_prime": 155.916, "theta_prime": -173.086, "eta_base": 137.548, "theta_base": -157.729, "v0": 3.582, "v1": -24.902, "v2": 35.571, "v3": -34.471, "v4": 19.520, "amplitude": 36.523, "phase_angle": 13.115, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 111.832, 195.948, 147.254 ], "x_axis": [ -0.187, 0.601, -0.777 ], "y_axis": [ -0.979, -0.053, 0.195 ], "z_axis": [ 0.076, 0.798, 0.598 ], "quaternion": [ 0.583, -0.259, 0.366, 0.678 ] } }, { "index": 1774, "index_chain": 77, "chain_name": "z", "nt_resnum": 245, "nt_name": "G", "nt_code": "G", "nt_id": "///z/245", "linked_nts": [ "///z/244", "///z/246" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 163.497, "beta": -140.165, "gamma": 155.758, "delta": 82.085, "epsilon": -126.609, "zeta": -136.868, "epsilon_zeta": 10.259, "bb_type": "--", "chi": -177.518, "glyco_bond": "anti", "C5prime_xyz": [ -1.287, 8.442, 1.557 ], "P_xyz": [ 0.896, 9.281, 0.374 ], "form": "A", "ssZp": 4.723, "Dp": 4.757, "splay_angle": 24.580, "splay_distance": 3.719, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 162.703, "theta": -159.890, "eta_prime": 176.761, "theta_prime": -156.625, "eta_base": -145.900, "theta_base": -140.927, "v0": 4.900, "v1": -26.032, "v2": 36.135, "v3": -34.323, "v4": 18.589, "amplitude": 36.834, "phase_angle": 11.180, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.154, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 113.233, 198.627, 148.692 ], "x_axis": [ -0.592, 0.489, -0.641 ], "y_axis": [ -0.799, -0.250, 0.547 ], "z_axis": [ 0.107, 0.836, 0.539 ], "quaternion": [ 0.417, -0.173, 0.448, 0.772 ] } }, { "index": 1775, "index_chain": 78, "chain_name": "z", "nt_resnum": 246, "nt_name": "A", "nt_code": "A", "nt_id": "///z/246", "linked_nts": [ "///z/245", "///z/247" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 27.989, "beta": 116.678, "gamma": -2.073, "delta": 81.225, "epsilon": -147.107, "zeta": -80.886, "epsilon_zeta": -66.222, "bb_type": "BI", "chi": -158.117, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.720, 0.399 ], "P_xyz": [ 0.946, 8.561, 1.611 ], "form": "A", "ssZp": 4.374, "Dp": 4.652, "splay_angle": 25.748, "splay_distance": 4.051, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 169.524, "theta": -143.371, "eta_prime": 171.884, "theta_prime": -138.725, "eta_base": -167.083, "theta_base": -113.032, "v0": 2.502, "v1": -24.448, "v2": 35.848, "v3": -35.411, "v4": 20.763, "amplitude": 37.084, "phase_angle": 14.836, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 114.824, 201.816, 149.754 ], "x_axis": [ -0.878, -0.119, -0.463 ], "y_axis": [ -0.372, -0.439, 0.818 ], "z_axis": [ -0.300, 0.890, 0.342 ], "quaternion": [ 0.078, -0.234, 0.524, 0.815 ] } }, { "index": 1776, "index_chain": 79, "chain_name": "z", "nt_resnum": 247, "nt_name": "C", "nt_code": "C", "nt_id": "///z/247", "linked_nts": [ "///z/246", "///z/248" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.618, "beta": 163.522, "gamma": 58.942, "delta": 81.276, "epsilon": -149.297, "zeta": -83.931, "epsilon_zeta": -65.366, "bb_type": "BI", "chi": -153.690, "glyco_bond": "anti", "C5prime_xyz": [ -1.299, 8.804, 0.149 ], "P_xyz": [ 1.278, 9.087, -0.231 ], "form": "A", "ssZp": 4.245, "Dp": 4.619, "splay_angle": 26.874, "splay_distance": 4.239, "splay_ratio": 0.232, "d22": 4.685, "d64": 4.826, "eta": 174.846, "theta": -151.686, "eta_prime": -171.022, "theta_prime": -151.354, "eta_base": -133.880, "theta_base": -130.436, "v0": 1.968, "v1": -23.920, "v2": 35.568, "v3": -35.390, "v4": 21.088, "amplitude": 36.931, "phase_angle": 15.612, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.833, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 113.168, 205.513, 149.746 ], "x_axis": [ -0.944, -0.328, 0.036 ], "y_axis": [ 0.117, -0.231, 0.966 ], "z_axis": [ -0.308, 0.916, 0.256 ], "quaternion": [ -0.143, -0.087, 0.604, 0.780 ] } }, { "index": 1777, "index_chain": 80, "chain_name": "z", "nt_resnum": 248, "nt_name": "U", "nt_code": "U", "nt_id": "///z/248", "linked_nts": [ "///z/247", "///z/249" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -51.114, "beta": 159.121, "gamma": 58.478, "delta": 81.592, "epsilon": -129.884, "zeta": -109.352, "epsilon_zeta": -20.532, "bb_type": "--", "chi": -155.428, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.744, 0.255 ], "P_xyz": [ 1.182, 9.023, -0.155 ], "form": ".", "ssZp": 4.187, "Dp": 4.708, "splay_angle": 36.871, "splay_distance": 5.734, "splay_ratio": 0.317, "d22": null, "d64": null, "eta": -179.452, "theta": -161.832, "eta_prime": -168.031, "theta_prime": -158.007, "eta_base": -137.292, "theta_base": -139.548, "v0": 2.361, "v1": -24.102, "v2": 35.491, "v3": -35.116, "v4": 20.664, "amplitude": 36.747, "phase_angle": 15.024, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.714, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 111.218, 209.268, 149.998 ], "x_axis": [ -0.785, -0.389, 0.482 ], "y_axis": [ 0.532, -0.024, 0.847 ], "z_axis": [ -0.318, 0.921, 0.225 ], "quaternion": [ -0.323, 0.058, 0.620, 0.713 ] } }, { "index": 1778, "index_chain": 81, "chain_name": "z", "nt_resnum": 249, "nt_name": "G", "nt_code": "G", "nt_id": "///z/249", "linked_nts": [ "///z/248", "///z/250" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -50.386, "beta": 156.354, "gamma": 47.862, "delta": 81.648, "epsilon": -134.312, "zeta": -90.410, "epsilon_zeta": -43.902, "bb_type": "BI", "chi": -174.217, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.509, 1.376 ], "P_xyz": [ 1.270, 8.554, 1.711 ], "form": "A", "ssZp": 4.691, "Dp": 4.734, "splay_angle": 24.115, "splay_distance": 3.708, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 174.130, "theta": -145.572, "eta_prime": 176.932, "theta_prime": -143.879, "eta_base": -160.937, "theta_base": -120.702, "v0": 4.642, "v1": -26.160, "v2": 36.562, "v3": -34.920, "v4": 19.101, "amplitude": 37.333, "phase_angle": 11.659, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.157, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 109.304, 214.618, 150.769 ], "x_axis": [ -0.341, -0.783, 0.521 ], "y_axis": [ 0.892, -0.093, 0.443 ], "z_axis": [ -0.298, 0.615, 0.730 ], "quaternion": [ 0.569, -0.076, -0.360, -0.735 ] } }, { "index": 1779, "index_chain": 82, "chain_name": "z", "nt_resnum": 250, "nt_name": "C", "nt_code": "C", "nt_id": "///z/250", "linked_nts": [ "///z/249", "///z/251" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -52.856, "beta": 152.672, "gamma": 58.259, "delta": 80.466, "epsilon": -150.203, "zeta": -68.810, "epsilon_zeta": -81.392, "bb_type": "BI", "chi": -172.490, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.623, 1.250 ], "P_xyz": [ 1.219, 8.846, 1.203 ], "form": "A", "ssZp": 4.617, "Dp": 4.634, "splay_angle": 27.063, "splay_distance": 4.242, "splay_ratio": 0.237, "d22": 4.648, "d64": 4.822, "eta": 168.166, "theta": -139.546, "eta_prime": -176.629, "theta_prime": -141.158, "eta_base": -135.953, "theta_base": -118.537, "v0": 2.417, "v1": -24.821, "v2": 36.553, "v3": -36.112, "v4": 21.237, "amplitude": 37.839, "phase_angle": 14.985, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.558, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 106.757, 216.431, 152.762 ], "x_axis": [ 0.180, -0.721, 0.669 ], "y_axis": [ 0.932, 0.343, 0.119 ], "z_axis": [ -0.315, 0.602, 0.734 ], "quaternion": [ 0.751, -0.161, -0.327, -0.550 ] } }, { "index": 1780, "index_chain": 83, "chain_name": "z", "nt_resnum": 251, "nt_name": "U", "nt_code": "U", "nt_id": "///z/251", "linked_nts": [ "///z/250", "///z/252" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.833, "beta": -176.708, "gamma": 53.151, "delta": 80.338, "epsilon": -117.301, "zeta": -43.280, "epsilon_zeta": -74.021, "bb_type": "--", "chi": -162.118, "glyco_bond": "anti", "C5prime_xyz": [ -1.343, 8.705, 0.653 ], "P_xyz": [ 1.204, 9.150, 1.104 ], "form": ".", "ssZp": 4.333, "Dp": 4.755, "splay_angle": 21.126, "splay_distance": 3.938, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 179.604, "theta": -116.801, "eta_prime": -170.822, "theta_prime": -117.955, "eta_base": -136.096, "theta_base": -102.248, "v0": 2.774, "v1": -24.943, "v2": 36.462, "v3": -35.860, "v4": 20.847, "amplitude": 37.659, "phase_angle": 14.485, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 104.142, 217.382, 155.964 ], "x_axis": [ 0.696, -0.414, 0.587 ], "y_axis": [ 0.663, 0.684, -0.304 ], "z_axis": [ -0.275, 0.601, 0.750 ], "quaternion": [ 0.885, -0.256, -0.244, -0.304 ] } }, { "index": 1781, "index_chain": 84, "chain_name": "z", "nt_resnum": 252, "nt_name": "A", "nt_code": "A", "nt_id": "///z/252", "linked_nts": [ "///z/251", "///z/253" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -105.929, "beta": 98.409, "gamma": 179.729, "delta": 147.505, "epsilon": -94.954, "zeta": 167.579, "epsilon_zeta": 97.467, "bb_type": "BII", "chi": -140.788, "glyco_bond": "anti", "C5prime_xyz": [ -1.730, 8.715, -0.053 ], "P_xyz": [ -1.480, 10.397, -2.053 ], "form": ".", "ssZp": 0.776, "Dp": 0.804, "splay_angle": 133.163, "splay_distance": 18.805, "splay_ratio": 0.918, "d22": null, "d64": null, "eta": -106.790, "theta": 90.829, "eta_prime": -109.005, "theta_prime": 111.297, "eta_base": -92.498, "theta_base": 108.874, "v0": -20.787, "v1": 35.457, "v2": -35.780, "v3": 24.699, "v4": -2.659, "amplitude": 36.990, "phase_angle": 165.301, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 103.817, 216.869, 159.855 ], "x_axis": [ 0.874, -0.186, 0.449 ], "y_axis": [ 0.296, 0.937, -0.188 ], "z_axis": [ -0.385, 0.297, 0.874 ], "quaternion": [ 0.960, -0.126, -0.217, -0.126 ] } }, { "index": 1782, "index_chain": 85, "chain_name": "z", "nt_resnum": 253, "nt_name": "G", "nt_code": "G", "nt_id": "///z/253", "linked_nts": [ "///z/252", "///z/254" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate,splayed-apart", "alpha": -82.010, "beta": 167.628, "gamma": 167.206, "delta": 83.422, "epsilon": -118.812, "zeta": -93.020, "epsilon_zeta": -25.792, "bb_type": "--", "chi": 177.426, "glyco_bond": "anti", "C5prime_xyz": [ -1.209, 8.313, 1.861 ], "P_xyz": [ 0.374, 10.327, 1.325 ], "form": "A", "ssZp": 4.694, "Dp": 4.723, "splay_angle": 21.443, "splay_distance": 3.312, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": -32.932, "theta": -169.329, "eta_prime": -52.527, "theta_prime": -159.320, "eta_base": -42.641, "theta_base": -116.512, "v0": 4.570, "v1": -24.971, "v2": 34.796, "v3": -33.143, "v4": 18.037, "amplitude": 35.499, "phase_angle": 11.423, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 95.285, 228.491, 147.782 ], "x_axis": [ 0.105, 0.952, 0.287 ], "y_axis": [ 0.393, -0.305, 0.868 ], "z_axis": [ 0.914, 0.022, -0.406 ], "quaternion": [ 0.314, 0.674, 0.499, 0.446 ] } }, { "index": 1783, "index_chain": 86, "chain_name": "z", "nt_resnum": 254, "nt_name": "C", "nt_code": "C", "nt_id": "///z/254", "linked_nts": [ "///z/253", "///z/255" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -46.354, "beta": 152.676, "gamma": 44.086, "delta": 80.979, "epsilon": -148.872, "zeta": -76.312, "epsilon_zeta": -72.561, "bb_type": "BI", "chi": -165.154, "glyco_bond": "anti", "C5prime_xyz": [ -1.264, 8.717, 0.850 ], "P_xyz": [ 1.342, 8.798, 1.082 ], "form": "A", "ssZp": 4.510, "Dp": 4.621, "splay_angle": 19.266, "splay_distance": 3.095, "splay_ratio": 0.170, "d22": 4.203, "d64": 4.225, "eta": 160.080, "theta": -143.671, "eta_prime": 178.077, "theta_prime": -145.205, "eta_base": -129.304, "theta_base": -125.202, "v0": 2.318, "v1": -24.339, "v2": 35.904, "v3": -35.555, "v4": 20.969, "amplitude": 37.192, "phase_angle": 15.125, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.272, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 97.769, 229.856, 146.068 ], "x_axis": [ 0.272, 0.524, 0.807 ], "y_axis": [ 0.306, -0.842, 0.444 ], "z_axis": [ 0.912, 0.127, -0.389 ], "quaternion": [ 0.100, 0.791, 0.263, 0.543 ] } }, { "index": 1784, "index_chain": 87, "chain_name": "z", "nt_resnum": 255, "nt_name": "C", "nt_code": "C", "nt_id": "///z/255", "linked_nts": [ "///z/254", "///z/256" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -55.942, "beta": 165.853, "gamma": 49.954, "delta": 79.127, "epsilon": -103.505, "zeta": -101.593, "epsilon_zeta": -1.913, "bb_type": "--", "chi": -160.620, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.819, 0.546 ], "P_xyz": [ 1.140, 9.285, 0.695 ], "form": ".", "ssZp": 4.100, "Dp": 4.711, "splay_angle": 26.693, "splay_distance": 4.285, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 178.487, "theta": -143.454, "eta_prime": -172.598, "theta_prime": -137.884, "eta_base": -141.313, "theta_base": -100.121, "v0": 0.748, "v1": -23.718, "v2": 36.389, "v3": -36.942, "v4": 22.843, "amplitude": 38.155, "phase_angle": 17.504, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.891, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 99.862, 231.696, 144.721 ], "x_axis": [ 0.361, 0.038, 0.932 ], "y_axis": [ 0.250, -0.967, -0.057 ], "z_axis": [ 0.898, 0.254, -0.359 ], "quaternion": [ -0.095, 0.819, 0.088, 0.558 ] } }, { "index": 1785, "index_chain": 88, "chain_name": "z", "nt_resnum": 256, "nt_name": "G", "nt_code": "G", "nt_id": "///z/256", "linked_nts": [ "///z/255", "///z/257" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -64.097, "beta": 114.358, "gamma": 85.816, "delta": 79.692, "epsilon": -134.675, "zeta": 37.004, "epsilon_zeta": 188.321, "bb_type": "--", "chi": -167.872, "glyco_bond": "anti", "C5prime_xyz": [ -1.212, 8.599, 0.933 ], "P_xyz": [ 0.583, 8.741, -0.968 ], "form": ".", "ssZp": 4.645, "Dp": 4.798, "splay_angle": 35.517, "splay_distance": 5.773, "splay_ratio": 0.312, "d22": null, "d64": null, "eta": 156.940, "theta": -10.999, "eta_prime": -178.105, "theta_prime": -60.355, "eta_base": -123.977, "theta_base": -97.404, "v0": 6.004, "v1": -28.611, "v2": 39.240, "v3": -36.789, "v4": 19.408, "amplitude": 39.862, "phase_angle": 10.132, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.172, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 104.102, 232.211, 145.063 ], "x_axis": [ 0.491, -0.477, 0.729 ], "y_axis": [ 0.134, -0.785, -0.604 ], "z_axis": [ 0.861, 0.394, -0.321 ], "quaternion": [ -0.310, 0.806, -0.106, 0.493 ] } }, { "index": 1786, "index_chain": 89, "chain_name": "z", "nt_resnum": 257, "nt_name": "A", "nt_code": "A", "nt_id": "///z/257", "linked_nts": [ "///z/256", "///z/258" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,internal-loop", "alpha": 163.274, "beta": 175.920, "gamma": 33.238, "delta": 144.089, "epsilon": -89.010, "zeta": 115.223, "epsilon_zeta": 155.767, "bb_type": "--", "chi": -103.580, "glyco_bond": "anti", "C5prime_xyz": [ -2.432, 8.157, -2.018 ], "P_xyz": [ -0.310, 9.695, -1.936 ], "form": ".", "ssZp": 0.595, "Dp": 0.678, "splay_angle": 34.207, "splay_distance": 6.046, "splay_ratio": 0.294, "d22": null, "d64": null, "eta": 55.278, "theta": 158.174, "eta_prime": 109.193, "theta_prime": 135.431, "eta_base": 125.726, "theta_base": 165.004, "v0": -23.825, "v1": 36.797, "v2": -34.978, "v3": 22.157, "v4": 0.828, "amplitude": 37.235, "phase_angle": 159.948, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.326, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 109.304, 231.360, 147.418 ], "x_axis": [ -0.663, 0.749, -0.000 ], "y_axis": [ -0.301, -0.267, -0.915 ], "z_axis": [ -0.685, -0.607, 0.403 ], "quaternion": [ 0.344, -0.224, -0.498, 0.764 ] } }, { "index": 1787, "index_chain": 90, "chain_name": "z", "nt_resnum": 258, "nt_name": "G", "nt_code": "G", "nt_id": "///z/258", "linked_nts": [ "///z/257", "///z/259" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-pair-contact,internal-loop", "alpha": 48.932, "beta": -112.296, "gamma": -103.698, "delta": 147.708, "epsilon": -105.835, "zeta": 143.311, "epsilon_zeta": 110.854, "bb_type": "BII", "chi": -103.758, "glyco_bond": "anti", "C5prime_xyz": [ -2.092, 8.186, -1.957 ], "P_xyz": [ -2.610, 9.086, -4.365 ], "form": ".", "ssZp": 0.837, "Dp": 1.057, "splay_angle": 60.861, "splay_distance": 10.184, "splay_ratio": 0.507, "d22": null, "d64": null, "eta": -76.468, "theta": 66.685, "eta_prime": -105.506, "theta_prime": 80.477, "eta_base": -94.784, "theta_base": 105.889, "v0": -19.852, "v1": 34.662, "v2": -35.400, "v3": 24.862, "v4": -3.348, "amplitude": 36.417, "phase_angle": 166.427, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 112.970, 227.211, 149.849 ], "x_axis": [ -0.091, -0.836, 0.540 ], "y_axis": [ 0.160, -0.548, -0.821 ], "z_axis": [ 0.983, 0.012, 0.184 ], "quaternion": [ -0.369, 0.564, -0.300, 0.675 ] } }, { "index": 1788, "index_chain": 91, "chain_name": "z", "nt_resnum": 259, "nt_name": "U", "nt_code": "U", "nt_id": "///z/259", "linked_nts": [ "///z/258", "///z/260" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -67.093, "beta": -163.563, "gamma": -38.620, "delta": 83.625, "epsilon": -149.168, "zeta": -66.361, "epsilon_zeta": -82.807, "bb_type": "BI", "chi": 146.854, "glyco_bond": "--", "C5prime_xyz": [ -2.108, 7.271, 3.074 ], "P_xyz": [ -2.367, 7.649, 5.659 ], "form": ".", "ssZp": 3.562, "Dp": 4.593, "splay_angle": 23.661, "splay_distance": 3.528, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 145.963, "theta": -172.232, "eta_prime": 123.958, "theta_prime": -154.310, "eta_base": 147.072, "theta_base": -113.018, "v0": 5.522, "v1": -26.196, "v2": 35.757, "v3": -33.513, "v4": 17.658, "amplitude": 36.311, "phase_angle": 10.024, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.114, "frame": { "rmsd": 0.015, "origin": [ 112.365, 235.567, 144.059 ], "x_axis": [ -0.621, -0.321, 0.715 ], "y_axis": [ -0.296, -0.749, -0.593 ], "z_axis": [ 0.726, -0.580, 0.370 ], "quaternion": [ -0.007, 0.435, -0.354, 0.828 ] } }, { "index": 1789, "index_chain": 92, "chain_name": "z", "nt_resnum": 260, "nt_name": "A", "nt_code": "A", "nt_id": "///z/260", "linked_nts": [ "///z/259", "///z/261" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -68.871, "beta": 171.957, "gamma": 70.693, "delta": 82.836, "epsilon": -125.589, "zeta": -51.151, "epsilon_zeta": -74.438, "bb_type": "--", "chi": -156.860, "glyco_bond": "anti", "C5prime_xyz": [ -0.961, 8.594, 0.326 ], "P_xyz": [ 1.595, 8.627, -0.294 ], "form": ".", "ssZp": 4.260, "Dp": 4.811, "splay_angle": 41.812, "splay_distance": 6.486, "splay_ratio": 0.357, "d22": null, "d64": null, "eta": -177.129, "theta": -104.619, "eta_prime": -158.739, "theta_prime": -101.862, "eta_base": -123.486, "theta_base": -58.924, "v0": 7.220, "v1": -28.242, "v2": 37.425, "v3": -34.236, "v4": 17.048, "amplitude": 37.777, "phase_angle": 7.822, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.512, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 115.084, 236.697, 146.002 ], "x_axis": [ 0.346, -0.836, 0.427 ], "y_axis": [ 0.193, -0.382, -0.904 ], "z_axis": [ 0.918, 0.395, 0.030 ], "quaternion": [ -0.498, 0.651, -0.247, 0.516 ] } }, { "index": 1790, "index_chain": 93, "chain_name": "z", "nt_resnum": 261, "nt_name": "G", "nt_code": "G", "nt_id": "///z/261", "linked_nts": [ "///z/260", "///z/262" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -73.639, "beta": 169.348, "gamma": 63.524, "delta": 81.916, "epsilon": -150.141, "zeta": -69.209, "epsilon_zeta": -80.932, "bb_type": "BI", "chi": -169.504, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.637, 1.084 ], "P_xyz": [ 1.244, 8.961, 1.169 ], "form": "A", "ssZp": 4.586, "Dp": 4.632, "splay_angle": 24.042, "splay_distance": 3.706, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 155.918, "theta": -140.656, "eta_prime": -168.763, "theta_prime": -140.951, "eta_base": -94.718, "theta_base": -106.785, "v0": 3.445, "v1": -25.133, "v2": 36.024, "v3": -35.032, "v4": 19.938, "amplitude": 37.031, "phase_angle": 13.390, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.495, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 119.388, 231.848, 145.840 ], "x_axis": [ -0.096, -0.735, -0.672 ], "y_axis": [ -0.065, 0.678, -0.732 ], "z_axis": [ 0.993, -0.026, -0.112 ], "quaternion": [ 0.606, -0.291, 0.687, -0.276 ] } }, { "index": 1791, "index_chain": 94, "chain_name": "z", "nt_resnum": 262, "nt_name": "U", "nt_code": "U", "nt_id": "///z/262", "linked_nts": [ "///z/261", "///z/263" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,junction-loop,kissing-loop", "alpha": -67.455, "beta": 171.307, "gamma": 59.377, "delta": 82.872, "epsilon": -133.514, "zeta": -64.245, "epsilon_zeta": -69.269, "bb_type": "BI", "chi": -167.513, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.612, 0.987 ], "P_xyz": [ 1.314, 8.857, 1.221 ], "form": ".", "ssZp": 4.551, "Dp": 4.698, "splay_angle": 32.840, "splay_distance": 5.047, "splay_ratio": 0.283, "d22": null, "d64": null, "eta": 172.138, "theta": -121.932, "eta_prime": -172.553, "theta_prime": -116.880, "eta_base": -121.455, "theta_base": -63.969, "v0": 3.454, "v1": -24.668, "v2": 35.302, "v3": -34.277, "v4": 19.471, "amplitude": 36.271, "phase_angle": 13.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.928, "filter_rmsd": 0.109, "frame": { "rmsd": 0.006, "origin": [ 122.552, 230.020, 145.217 ], "x_axis": [ -0.131, -0.124, -0.984 ], "y_axis": [ 0.026, 0.991, -0.129 ], "z_axis": [ 0.991, -0.043, -0.127 ], "quaternion": [ 0.658, -0.033, 0.750, -0.057 ] } }, { "index": 1792, "index_chain": 95, "chain_name": "z", "nt_resnum": 263, "nt_name": "G", "nt_code": "G", "nt_id": "///z/263", "linked_nts": [ "///z/262", "///z/264" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,hairpin-loop,junction-loop,kissing-loop", "alpha": -61.047, "beta": 161.477, "gamma": 59.949, "delta": 84.070, "epsilon": -91.783, "zeta": -153.887, "epsilon_zeta": 62.104, "bb_type": "BII", "chi": -152.822, "glyco_bond": "anti", "C5prime_xyz": [ -1.175, 8.728, 0.117 ], "P_xyz": [ 1.410, 8.794, -0.352 ], "form": ".", "ssZp": 3.604, "Dp": 4.691, "splay_angle": 38.711, "splay_distance": 6.161, "splay_ratio": 0.340, "d22": null, "d64": null, "eta": -179.632, "theta": -176.170, "eta_prime": -155.929, "theta_prime": -165.194, "eta_base": -87.201, "theta_base": -152.379, "v0": 4.418, "v1": -25.096, "v2": 35.101, "v3": -33.517, "v4": 18.392, "amplitude": 35.847, "phase_angle": 11.712, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.784, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 125.037, 230.925, 140.918 ], "x_axis": [ 0.049, 0.776, -0.629 ], "y_axis": [ 0.326, 0.583, 0.744 ], "z_axis": [ 0.944, -0.241, -0.224 ], "quaternion": [ 0.593, 0.415, 0.663, 0.189 ] } }, { "index": 1793, "index_chain": 96, "chain_name": "z", "nt_resnum": 264, "nt_name": "U", "nt_code": "U", "nt_id": "///z/264", "linked_nts": [ "///z/263", "///z/265" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,kissing-loop", "alpha": -51.984, "beta": 113.992, "gamma": 59.727, "delta": 81.359, "epsilon": -116.447, "zeta": -76.658, "epsilon_zeta": -39.789, "bb_type": "--", "chi": -154.535, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.763, 0.193 ], "P_xyz": [ 0.910, 8.265, -0.901 ], "form": ".", "ssZp": 4.011, "Dp": 4.723, "splay_angle": 84.498, "splay_distance": 12.402, "splay_ratio": 0.673, "d22": 8.166, "d64": 10.939, "eta": 178.661, "theta": -100.692, "eta_prime": -177.312, "theta_prime": -153.241, "eta_base": -169.701, "theta_base": 145.895, "v0": 1.888, "v1": -23.817, "v2": 35.456, "v3": -35.347, "v4": 21.120, "amplitude": 36.838, "phase_angle": 15.743, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.010, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 130.704, 228.547, 141.355 ], "x_axis": [ -0.025, 0.860, -0.510 ], "y_axis": [ 0.172, 0.506, 0.845 ], "z_axis": [ 0.985, -0.067, -0.161 ], "quaternion": [ 0.574, 0.397, 0.650, 0.299 ] } }, { "index": 1794, "index_chain": 97, "chain_name": "z", "nt_resnum": 265, "nt_name": "U", "nt_code": "U", "nt_id": "///z/265", "linked_nts": [ "///z/264", "///z/266" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,kissing-loop", "alpha": -171.920, "beta": 149.152, "gamma": 59.237, "delta": 147.225, "epsilon": -152.559, "zeta": -140.983, "epsilon_zeta": -11.576, "bb_type": "--", "chi": -126.059, "glyco_bond": "anti", "C5prime_xyz": [ -2.014, 8.618, -0.895 ], "P_xyz": [ 0.574, 8.940, -0.591 ], "form": ".", "ssZp": 1.913, "Dp": 1.932, "splay_angle": 32.650, "splay_distance": 5.730, "splay_ratio": 0.286, "d22": null, "d64": null, "eta": 25.903, "theta": -109.103, "eta_prime": 82.559, "theta_prime": -145.564, "eta_base": 57.628, "theta_base": -117.008, "v0": -22.329, "v1": 36.676, "v2": -36.208, "v3": 24.240, "v4": -1.429, "amplitude": 37.793, "phase_angle": 163.346, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.279, "filter_rmsd": 0.103, "frame": { "rmsd": 0.002, "origin": [ 137.781, 221.633, 148.834 ], "x_axis": [ -0.657, -0.060, 0.752 ], "y_axis": [ -0.190, 0.978, -0.088 ], "z_axis": [ -0.730, -0.201, -0.654 ], "quaternion": [ -0.408, -0.069, 0.907, -0.080 ] } }, { "index": 1795, "index_chain": 98, "chain_name": "z", "nt_resnum": 266, "nt_name": "G", "nt_code": "G", "nt_id": "///z/266", "linked_nts": [ "///z/265", "///z/267" ], "nt_type": "RNA", "dbn": "}", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,phosphate", "alpha": 36.075, "beta": 129.677, "gamma": -60.681, "delta": 81.069, "epsilon": -170.694, "zeta": -80.153, "epsilon_zeta": -90.541, "bb_type": "BI", "chi": -149.067, "glyco_bond": "anti", "C5prime_xyz": [ -1.252, 8.795, -0.134 ], "P_xyz": [ -0.029, 10.456, 1.488 ], "form": "A", "ssZp": 4.137, "Dp": 4.472, "splay_angle": 21.359, "splay_distance": 3.612, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 132.070, "theta": -162.542, "eta_prime": 137.198, "theta_prime": -158.211, "eta_base": -173.753, "theta_base": -127.477, "v0": 2.704, "v1": -24.661, "v2": 36.069, "v3": -35.462, "v4": 20.677, "amplitude": 37.261, "phase_angle": 14.531, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 134.136, 219.528, 144.946 ], "x_axis": [ -0.347, 0.401, 0.848 ], "y_axis": [ 0.559, 0.814, -0.156 ], "z_axis": [ -0.753, 0.420, -0.507 ], "quaternion": [ -0.490, 0.294, 0.817, 0.081 ] } }, { "index": 1796, "index_chain": 99, "chain_name": "z", "nt_resnum": 267, "nt_name": "G", "nt_code": "G", "nt_id": "///z/267", "linked_nts": [ "///z/266", "///z/268" ], "nt_type": "RNA", "dbn": "}", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,kissing-loop", "alpha": 155.465, "beta": -150.046, "gamma": 169.461, "delta": 81.607, "epsilon": -133.306, "zeta": -81.942, "epsilon_zeta": -51.364, "bb_type": "BI", "chi": 179.707, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.426, 1.711 ], "P_xyz": [ 0.525, 9.867, 0.696 ], "form": "A", "ssZp": 4.686, "Dp": 4.701, "splay_angle": 24.538, "splay_distance": 3.901, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 163.278, "theta": -157.486, "eta_prime": 178.417, "theta_prime": -155.518, "eta_base": -143.954, "theta_base": -127.576, "v0": 3.323, "v1": -24.742, "v2": 35.620, "v3": -34.692, "v4": 19.783, "amplitude": 36.639, "phase_angle": 13.545, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.727, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 130.584, 219.929, 144.425 ], "x_axis": [ 0.079, 0.615, 0.785 ], "y_axis": [ 0.618, 0.588, -0.522 ], "z_axis": [ -0.782, 0.526, -0.333 ], "quaternion": [ 0.577, -0.454, -0.679, -0.001 ] } }, { "index": 1797, "index_chain": 100, "chain_name": "z", "nt_resnum": 268, "nt_name": "G", "nt_code": "G", "nt_id": "///z/268", "linked_nts": [ "///z/267", "///z/269" ], "nt_type": "RNA", "dbn": "}", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop", "alpha": -49.061, "beta": 161.081, "gamma": 50.388, "delta": 80.398, "epsilon": -152.656, "zeta": -107.602, "epsilon_zeta": -45.054, "bb_type": "BI", "chi": -170.928, "glyco_bond": "anti", "C5prime_xyz": [ -1.778, 8.700, 1.144 ], "P_xyz": [ 0.738, 9.216, 1.639 ], "form": ".", "ssZp": 4.500, "Dp": 4.536, "splay_angle": 78.754, "splay_distance": 11.620, "splay_ratio": 0.635, "d22": null, "d64": null, "eta": 168.677, "theta": -148.950, "eta_prime": -173.758, "theta_prime": -178.633, "eta_base": -130.095, "theta_base": 124.497, "v0": -0.965, "v1": -21.489, "v2": 34.445, "v3": -36.017, "v4": 23.304, "amplitude": 36.680, "phase_angle": 20.101, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.664, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 126.947, 221.215, 145.002 ], "x_axis": [ 0.426, 0.824, 0.374 ], "y_axis": [ 0.494, 0.135, -0.859 ], "z_axis": [ -0.758, 0.551, -0.349 ], "quaternion": [ 0.550, -0.640, -0.514, 0.150 ] } }, { "index": 1798, "index_chain": 101, "chain_name": "z", "nt_resnum": 269, "nt_name": "U", "nt_code": "U", "nt_id": "///z/269", "linked_nts": [ "///z/268", "///z/270" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart", "alpha": 179.893, "beta": -149.916, "gamma": 60.921, "delta": 146.469, "epsilon": -106.015, "zeta": -69.455, "epsilon_zeta": -36.560, "bb_type": "--", "chi": -128.100, "glyco_bond": "anti", "C5prime_xyz": [ -1.877, 8.632, -0.796 ], "P_xyz": [ 0.168, 9.517, 0.594 ], "form": ".", "ssZp": 1.077, "Dp": 1.093, "splay_angle": 118.273, "splay_distance": 16.739, "splay_ratio": 0.859, "d22": 8.999, "d64": 11.381, "eta": 86.406, "theta": -52.909, "eta_prime": 102.074, "theta_prime": -68.685, "eta_base": 58.683, "theta_base": -43.137, "v0": -21.210, "v1": 35.219, "v2": -35.038, "v3": 23.700, "v4": -1.768, "amplitude": 36.453, "phase_angle": 163.981, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.109, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 124.076, 212.217, 138.234 ], "x_axis": [ 0.770, -0.191, -0.608 ], "y_axis": [ 0.062, 0.972, -0.226 ], "z_axis": [ 0.635, 0.136, 0.761 ], "quaternion": [ 0.936, -0.097, 0.332, -0.068 ] } }, { "index": 1799, "index_chain": 102, "chain_name": "z", "nt_resnum": 270, "nt_name": "C", "nt_code": "C", "nt_id": "///z/270", "linked_nts": [ "///z/269", "///z/271" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,junction-loop,kissing-loop,splayed-apart", "alpha": -65.516, "beta": -164.387, "gamma": 55.101, "delta": 82.083, "epsilon": -176.579, "zeta": -93.098, "epsilon_zeta": -83.481, "bb_type": "BI", "chi": -159.706, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.789, 0.509 ], "P_xyz": [ 1.113, 9.259, 1.227 ], "form": ".", "ssZp": 4.293, "Dp": 4.359, "splay_angle": 48.820, "splay_distance": 7.202, "splay_ratio": 0.414, "d22": null, "d64": null, "eta": 169.491, "theta": 175.596, "eta_prime": -147.750, "theta_prime": 178.307, "eta_base": -121.428, "theta_base": -162.969, "v0": 0.821, "v1": -22.366, "v2": 34.166, "v3": -34.646, "v4": 21.344, "amplitude": 35.790, "phase_angle": 17.326, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.943, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 126.895, 228.241, 142.167 ], "x_axis": [ -0.239, 0.231, -0.943 ], "y_axis": [ -0.539, -0.839, -0.069 ], "z_axis": [ -0.807, 0.492, 0.326 ], "quaternion": [ 0.248, -0.564, 0.136, 0.775 ] } }, { "index": 1800, "index_chain": 103, "chain_name": "z", "nt_resnum": 271, "nt_name": "G", "nt_code": "G", "nt_id": "///z/271", "linked_nts": [ "///z/270", "///z/272" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,junction-loop,kissing-loop", "alpha": -56.259, "beta": 174.627, "gamma": 60.982, "delta": 83.701, "epsilon": -122.330, "zeta": -62.922, "epsilon_zeta": -59.408, "bb_type": "--", "chi": 169.688, "glyco_bond": "--", "C5prime_xyz": [ -1.418, 8.058, 2.227 ], "P_xyz": [ 1.075, 7.912, 3.035 ], "form": ".", "ssZp": 4.733, "Dp": 4.765, "splay_angle": 31.772, "splay_distance": 4.918, "splay_ratio": 0.278, "d22": null, "d64": null, "eta": -165.684, "theta": -111.243, "eta_prime": -169.798, "theta_prime": -108.338, "eta_base": -160.929, "theta_base": -63.487, "v0": 6.099, "v1": -26.680, "v2": 36.028, "v3": -33.491, "v4": 17.294, "amplitude": 36.500, "phase_angle": 9.224, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.792, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 124.232, 231.171, 148.182 ], "x_axis": [ -0.146, 0.172, -0.974 ], "y_axis": [ -0.074, -0.984, -0.162 ], "z_axis": [ -0.987, 0.048, 0.156 ], "quaternion": [ 0.081, -0.648, -0.038, 0.756 ] } }, { "index": 1801, "index_chain": 104, "chain_name": "z", "nt_resnum": 272, "nt_name": "C", "nt_code": "C", "nt_id": "///z/272", "linked_nts": [ "///z/271", "///z/273" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -63.538, "beta": 177.372, "gamma": 48.600, "delta": 81.125, "epsilon": -113.747, "zeta": -88.112, "epsilon_zeta": -25.635, "bb_type": "--", "chi": -162.240, "glyco_bond": "anti", "C5prime_xyz": [ -1.294, 8.741, 0.666 ], "P_xyz": [ 1.256, 9.129, 1.140 ], "form": ".", "ssZp": 4.301, "Dp": 4.744, "splay_angle": 26.016, "splay_distance": 4.137, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 166.638, "theta": -132.585, "eta_prime": -170.711, "theta_prime": -128.072, "eta_base": -104.086, "theta_base": -89.214, "v0": 2.496, "v1": -24.419, "v2": 35.844, "v3": -35.374, "v4": 20.742, "amplitude": 37.079, "phase_angle": 14.826, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.600, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 120.228, 231.852, 145.408 ], "x_axis": [ -0.136, -0.753, -0.644 ], "y_axis": [ 0.082, -0.656, 0.750 ], "z_axis": [ -0.987, 0.049, 0.151 ], "quaternion": [ -0.299, -0.585, 0.287, 0.697 ] } }, { "index": 1802, "index_chain": 105, "chain_name": "z", "nt_resnum": 273, "nt_name": "G", "nt_code": "G", "nt_id": "///z/273", "linked_nts": [ "///z/272", "///z/274" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor", "alpha": -68.537, "beta": 158.014, "gamma": 56.580, "delta": 81.520, "epsilon": -146.408, "zeta": -141.397, "epsilon_zeta": -5.011, "bb_type": "--", "chi": -163.786, "glyco_bond": "anti", "C5prime_xyz": [ -1.292, 8.701, 0.746 ], "P_xyz": [ 1.315, 8.912, 0.546 ], "form": ".", "ssZp": 4.530, "Dp": 4.671, "splay_angle": 50.860, "splay_distance": 7.237, "splay_ratio": 0.432, "d22": null, "d64": null, "eta": 152.376, "theta": 146.591, "eta_prime": 170.846, "theta_prime": 146.279, "eta_base": -135.949, "theta_base": 119.609, "v0": 3.616, "v1": -25.365, "v2": 36.264, "v3": -35.166, "v4": 19.898, "amplitude": 37.241, "phase_angle": 13.154, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.334, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 116.605, 230.015, 144.624 ], "x_axis": [ 0.458, -0.889, 0.002 ], "y_axis": [ 0.026, 0.016, 1.000 ], "z_axis": [ -0.889, -0.458, 0.031 ], "quaternion": [ 0.613, 0.594, -0.363, -0.373 ] } }, { "index": 1803, "index_chain": 106, "chain_name": "z", "nt_resnum": 274, "nt_name": "A", "nt_code": "A", "nt_id": "///z/274", "linked_nts": [ "///z/273", "///z/275" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,phosphate", "alpha": -73.347, "beta": 136.843, "gamma": 67.209, "delta": 80.991, "epsilon": -148.583, "zeta": -40.345, "epsilon_zeta": -108.238, "bb_type": "BI", "chi": -101.214, "glyco_bond": "anti", "C5prime_xyz": [ -2.098, 7.735, -2.631 ], "P_xyz": [ -0.574, 6.538, -4.400 ], "form": ".", "ssZp": 1.139, "Dp": 4.647, "splay_angle": 43.020, "splay_distance": 7.439, "splay_ratio": 0.367, "d22": null, "d64": null, "eta": 164.808, "theta": -117.259, "eta_prime": 161.470, "theta_prime": -126.395, "eta_base": 135.443, "theta_base": -123.972, "v0": 2.840, "v1": -24.981, "v2": 36.370, "v3": -35.726, "v4": 20.745, "amplitude": 37.543, "phase_angle": 14.356, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.349, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 113.505, 236.214, 146.704 ], "x_axis": [ -0.113, -0.583, -0.805 ], "y_axis": [ -0.754, -0.478, 0.451 ], "z_axis": [ -0.647, 0.658, -0.385 ], "quaternion": [ -0.078, 0.661, -0.505, -0.549 ] } }, { "index": 1804, "index_chain": 107, "chain_name": "z", "nt_resnum": 275, "nt_name": "A", "nt_code": "A", "nt_id": "///z/275", "linked_nts": [ "///z/274", "///z/276" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -108.225, "beta": 137.258, "gamma": 153.177, "delta": 81.257, "epsilon": -145.158, "zeta": -65.759, "epsilon_zeta": -79.400, "bb_type": "BI", "chi": -141.201, "glyco_bond": "anti", "C5prime_xyz": [ -1.350, 8.692, -0.619 ], "P_xyz": [ -1.168, 9.882, -2.957 ], "form": ".", "ssZp": 3.711, "Dp": 4.666, "splay_angle": 38.210, "splay_distance": 6.060, "splay_ratio": 0.328, "d22": null, "d64": null, "eta": -149.758, "theta": -174.381, "eta_prime": -132.454, "theta_prime": -165.847, "eta_base": -112.704, "theta_base": -132.510, "v0": 2.809, "v1": -24.670, "v2": 35.907, "v3": -35.300, "v4": 20.514, "amplitude": 37.069, "phase_angle": 14.381, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.010, "filter_rmsd": 0.037, "frame": { "rmsd": 0.002, "origin": [ 108.327, 234.629, 141.603 ], "x_axis": [ -0.525, -0.750, -0.403 ], "y_axis": [ -0.542, -0.070, 0.838 ], "z_axis": [ -0.656, 0.658, -0.369 ], "quaternion": [ -0.094, -0.478, 0.675, 0.554 ] } }, { "index": 1805, "index_chain": 108, "chain_name": "z", "nt_resnum": 276, "nt_name": "A", "nt_code": "A", "nt_id": "///z/276", "linked_nts": [ "///z/275", "///z/277" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -74.023, "beta": -167.768, "gamma": 44.629, "delta": 81.192, "epsilon": -112.552, "zeta": -65.967, "epsilon_zeta": -46.585, "bb_type": "--", "chi": -179.990, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.385, 1.671 ], "P_xyz": [ 0.708, 8.579, 3.062 ], "form": ".", "ssZp": 4.722, "Dp": 4.761, "splay_angle": 44.060, "splay_distance": 6.711, "splay_ratio": 0.375, "d22": null, "d64": null, "eta": 170.440, "theta": -110.983, "eta_prime": 179.804, "theta_prime": -100.212, "eta_base": -143.513, "theta_base": -51.591, "v0": 3.141, "v1": -25.020, "v2": 36.176, "v3": -35.369, "v4": 20.335, "amplitude": 37.267, "phase_angle": 13.895, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.734, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 102.764, 235.252, 139.283 ], "x_axis": [ 0.189, -0.911, 0.366 ], "y_axis": [ 0.271, 0.407, 0.872 ], "z_axis": [ -0.944, -0.065, 0.324 ], "quaternion": [ 0.693, 0.338, -0.473, -0.427 ] } }, { "index": 1806, "index_chain": 109, "chain_name": "z", "nt_resnum": 277, "nt_name": "G", "nt_code": "G", "nt_id": "///z/277", "linked_nts": [ "///z/276", "///z/278" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -63.646, "beta": 158.404, "gamma": 67.122, "delta": 81.478, "epsilon": -151.990, "zeta": -72.732, "epsilon_zeta": -79.258, "bb_type": "BI", "chi": -169.310, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.624, 1.079 ], "P_xyz": [ 1.174, 8.965, 0.735 ], "form": "A", "ssZp": 4.614, "Dp": 4.643, "splay_angle": 23.738, "splay_distance": 3.747, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 158.047, "theta": -145.075, "eta_prime": -166.633, "theta_prime": -149.016, "eta_base": -92.336, "theta_base": -129.713, "v0": 4.007, "v1": -25.965, "v2": 36.836, "v3": -35.519, "v4": 19.882, "amplitude": 37.751, "phase_angle": 12.642, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.276, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 100.305, 231.653, 144.385 ], "x_axis": [ 0.336, 0.049, 0.940 ], "y_axis": [ -0.056, 0.998, -0.032 ], "z_axis": [ -0.940, -0.042, 0.338 ], "quaternion": [ 0.817, 0.003, -0.575, 0.032 ] } }, { "index": 1807, "index_chain": 110, "chain_name": "z", "nt_resnum": 278, "nt_name": "G", "nt_code": "G", "nt_id": "///z/278", "linked_nts": [ "///z/277", "///z/279" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -69.477, "beta": 164.240, "gamma": 69.663, "delta": 81.341, "epsilon": -146.404, "zeta": -120.255, "epsilon_zeta": -26.149, "bb_type": "--", "chi": -177.842, "glyco_bond": "anti", "C5prime_xyz": [ -1.707, 8.579, 1.526 ], "P_xyz": [ 0.855, 9.095, 1.784 ], "form": "A", "ssZp": 4.527, "Dp": 4.578, "splay_angle": 22.478, "splay_distance": 3.425, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 171.885, "theta": -152.276, "eta_prime": -172.781, "theta_prime": -149.440, "eta_base": -133.507, "theta_base": -121.723, "v0": 0.163, "v1": -22.365, "v2": 34.762, "v3": -35.583, "v4": 22.342, "amplitude": 36.615, "phase_angle": 18.307, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.553, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 97.609, 229.655, 146.052 ], "x_axis": [ 0.314, 0.536, 0.784 ], "y_axis": [ -0.183, 0.844, -0.504 ], "z_axis": [ -0.932, 0.015, 0.363 ], "quaternion": [ 0.794, -0.163, -0.540, 0.226 ] } }, { "index": 1808, "index_chain": 111, "chain_name": "z", "nt_resnum": 279, "nt_name": "C", "nt_code": "C", "nt_id": "///z/279", "linked_nts": [ "///z/278", "///z/280" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": 27.594, "beta": 124.686, "gamma": 0.345, "delta": 81.426, "epsilon": -166.301, "zeta": -78.730, "epsilon_zeta": -87.572, "bb_type": "BI", "chi": -153.028, "glyco_bond": "anti", "C5prime_xyz": [ -1.085, 8.793, 0.118 ], "P_xyz": [ 1.317, 8.705, 1.191 ], "form": "A", "ssZp": 4.227, "Dp": 4.485, "splay_angle": 21.433, "splay_distance": 3.732, "splay_ratio": 0.194, "d22": 4.042, "d64": 4.768, "eta": 171.828, "theta": -125.343, "eta_prime": 179.988, "theta_prime": -132.803, "eta_base": -142.730, "theta_base": -116.811, "v0": 2.453, "v1": -23.990, "v2": 35.278, "v3": -34.785, "v4": 20.432, "amplitude": 36.496, "phase_angle": 14.843, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.006, "origin": [ 95.086, 228.603, 148.115 ], "x_axis": [ 0.197, 0.937, 0.288 ], "y_axis": [ -0.373, 0.343, -0.862 ], "z_axis": [ -0.907, 0.063, 0.417 ], "quaternion": [ 0.699, -0.331, -0.427, 0.468 ] } }, { "index": 1809, "index_chain": 112, "chain_name": "z", "nt_resnum": 280, "nt_name": "C", "nt_code": "C", "nt_id": "///z/280", "linked_nts": [ "///z/279", "///z/281" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop", "alpha": 144.342, "beta": -150.012, "gamma": -177.016, "delta": 81.293, "epsilon": -162.593, "zeta": -76.379, "epsilon_zeta": -86.213, "bb_type": "BI", "chi": -178.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.260, 8.437, 1.637 ], "P_xyz": [ 0.398, 10.133, 0.523 ], "form": ".", "ssZp": 4.519, "Dp": 4.553, "splay_angle": 62.621, "splay_distance": 9.645, "splay_ratio": 0.525, "d22": 6.747, "d64": 8.139, "eta": 166.649, "theta": -171.882, "eta_prime": -175.152, "theta_prime": 157.919, "eta_base": -135.150, "theta_base": 107.000, "v0": 4.244, "v1": -25.999, "v2": 36.709, "v3": -35.231, "v4": 19.543, "amplitude": 37.565, "phase_angle": 12.250, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.805, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 93.182, 229.089, 151.289 ], "x_axis": [ 0.070, 0.992, -0.108 ], "y_axis": [ -0.478, -0.062, -0.876 ], "z_axis": [ -0.876, 0.113, 0.469 ], "quaternion": [ 0.608, -0.407, -0.316, 0.604 ] } }, { "index": 1810, "index_chain": 113, "chain_name": "z", "nt_resnum": 281, "nt_name": "U", "nt_code": "U", "nt_id": "///z/281", "linked_nts": [ "///z/280", "///z/282" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 166.282, "beta": 146.225, "gamma": 126.869, "delta": 80.483, "epsilon": -157.927, "zeta": 38.779, "epsilon_zeta": 163.294, "bb_type": "--", "chi": -157.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.416, 8.748, 0.357 ], "P_xyz": [ -0.096, 9.867, -1.618 ], "form": ".", "ssZp": 4.368, "Dp": 4.574, "splay_angle": 90.872, "splay_distance": 13.255, "splay_ratio": 0.713, "d22": 5.101, "d64": 6.738, "eta": 95.988, "theta": -45.273, "eta_prime": 104.413, "theta_prime": -51.744, "eta_base": 69.306, "theta_base": -43.912, "v0": 2.187, "v1": -24.350, "v2": 36.053, "v3": -35.783, "v4": 21.181, "amplitude": 37.384, "phase_angle": 15.335, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 94.092, 219.593, 149.865 ], "x_axis": [ 0.574, 0.654, -0.493 ], "y_axis": [ -0.748, 0.664, 0.010 ], "z_axis": [ 0.334, 0.363, 0.870 ], "quaternion": [ 0.881, -0.100, 0.235, 0.397 ] } }, { "index": 1811, "index_chain": 114, "chain_name": "z", "nt_resnum": 282, "nt_name": "U", "nt_code": "U", "nt_id": "///z/282", "linked_nts": [ "///z/281", "///z/283" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,splayed-apart", "alpha": -152.987, "beta": -122.154, "gamma": 54.375, "delta": 145.532, "epsilon": -95.921, "zeta": 54.413, "epsilon_zeta": 209.665, "bb_type": "--", "chi": -131.928, "glyco_bond": "anti", "C5prime_xyz": [ -1.928, 8.690, -0.614 ], "P_xyz": [ -0.546, 9.580, 1.433 ], "form": ".", "ssZp": 0.834, "Dp": 0.848, "splay_angle": 33.870, "splay_distance": 5.657, "splay_ratio": 0.319, "d22": null, "d64": null, "eta": 157.708, "theta": 107.074, "eta_prime": -152.428, "theta_prime": 98.304, "eta_base": -112.161, "theta_base": 87.288, "v0": -22.279, "v1": 35.926, "v2": -35.090, "v3": 23.157, "v4": -0.757, "amplitude": 36.817, "phase_angle": 162.384, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 88.993, 231.810, 149.197 ], "x_axis": [ -0.428, -0.490, -0.759 ], "y_axis": [ 0.064, -0.854, 0.516 ], "z_axis": [ -0.902, 0.172, 0.397 ], "quaternion": [ -0.169, -0.507, 0.210, 0.818 ] } }, { "index": 1812, "index_chain": 115, "chain_name": "z", "nt_resnum": 283, "nt_name": "G", "nt_code": "G", "nt_id": "///z/283", "linked_nts": [ "///z/282", "///z/284" ], "nt_type": "RNA", "dbn": ")", "summary": "~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,splayed-apart", "alpha": 131.899, "beta": -142.616, "gamma": 161.481, "delta": 148.186, "epsilon": -145.707, "zeta": 100.749, "epsilon_zeta": 113.544, "bb_type": "--", "chi": -69.558, "glyco_bond": "--", "C5prime_xyz": [ -3.051, 6.936, -2.999 ], "P_xyz": [ -1.710, 5.654, -4.858 ], "form": ".", "ssZp": 1.130, "Dp": 1.783, "splay_angle": 151.800, "splay_distance": 19.840, "splay_ratio": 0.970, "d22": null, "d64": null, "eta": 170.473, "theta": 73.879, "eta_prime": -158.377, "theta_prime": 59.225, "eta_base": -179.943, "theta_base": 136.567, "v0": -20.528, "v1": 35.461, "v2": -36.045, "v3": 25.122, "v4": -3.087, "amplitude": 37.158, "phase_angle": 165.941, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 93.494, 228.869, 150.957 ], "x_axis": [ 0.084, 0.991, -0.108 ], "y_axis": [ 0.423, 0.063, 0.904 ], "z_axis": [ 0.902, -0.121, -0.414 ], "quaternion": [ 0.428, 0.599, 0.590, 0.332 ] } }, { "index": 1813, "index_chain": 116, "chain_name": "z", "nt_resnum": 284, "nt_name": "U", "nt_code": "U", "nt_id": "///z/284", "linked_nts": [ "///z/283", "///z/285" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart", "alpha": -134.098, "beta": -164.632, "gamma": 173.151, "delta": 81.253, "epsilon": -151.563, "zeta": -92.091, "epsilon_zeta": -59.472, "bb_type": "BI", "chi": -154.836, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.758, 0.218 ], "P_xyz": [ -0.159, 10.131, -1.645 ], "form": "A", "ssZp": 4.290, "Dp": 4.606, "splay_angle": 21.790, "splay_distance": 3.501, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": -88.699, "theta": -157.803, "eta_prime": -100.709, "theta_prime": -165.137, "eta_base": -151.525, "theta_base": -139.446, "v0": 1.922, "v1": -23.870, "v2": 35.512, "v3": -35.389, "v4": 21.116, "amplitude": 36.887, "phase_angle": 15.696, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 102.825, 216.533, 163.382 ], "x_axis": [ 0.879, 0.446, -0.171 ], "y_axis": [ -0.477, 0.833, -0.282 ], "z_axis": [ 0.017, 0.329, 0.944 ], "quaternion": [ 0.956, -0.160, 0.049, 0.241 ] } }, { "index": 1814, "index_chain": 117, "chain_name": "z", "nt_resnum": 285, "nt_name": "G", "nt_code": "G", "nt_id": "///z/285", "linked_nts": [ "///z/284", "///z/286" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 168.455, "beta": -153.739, "gamma": 147.739, "delta": 83.463, "epsilon": -131.903, "zeta": -92.728, "epsilon_zeta": -39.175, "bb_type": "BI", "chi": 174.358, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.255, 1.978 ], "P_xyz": [ 0.898, 9.247, 1.361 ], "form": "A", "ssZp": 4.669, "Dp": 4.701, "splay_angle": 22.777, "splay_distance": 3.454, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 146.071, "theta": -160.128, "eta_prime": 162.267, "theta_prime": -159.931, "eta_base": -155.908, "theta_base": -146.579, "v0": 3.932, "v1": -24.542, "v2": 34.633, "v3": -33.363, "v4": 18.587, "amplitude": 35.463, "phase_angle": 12.421, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 104.355, 217.249, 166.449 ], "x_axis": [ 0.344, 0.502, -0.794 ], "y_axis": [ -0.880, 0.468, -0.085 ], "z_axis": [ 0.329, 0.728, 0.602 ], "quaternion": [ 0.777, -0.261, 0.361, 0.444 ] } }, { "index": 1815, "index_chain": 118, "chain_name": "z", "nt_resnum": 286, "nt_name": "G", "nt_code": "G", "nt_id": "///z/286", "linked_nts": [ "///z/285", "///z/287" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.526, "beta": 173.001, "gamma": 54.489, "delta": 84.301, "epsilon": -136.857, "zeta": -77.481, "epsilon_zeta": -59.376, "bb_type": "BI", "chi": -165.046, "glyco_bond": "anti", "C5prime_xyz": [ -1.032, 8.613, 0.862 ], "P_xyz": [ 1.576, 8.648, 1.172 ], "form": ".", "ssZp": 4.518, "Dp": 4.703, "splay_angle": 22.888, "splay_distance": 3.546, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 167.441, "theta": -134.760, "eta_prime": 173.656, "theta_prime": -131.058, "eta_base": -164.333, "theta_base": -88.682, "v0": 5.578, "v1": -25.778, "v2": 35.071, "v3": -32.810, "v4": 17.219, "amplitude": 35.592, "phase_angle": 9.815, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.600, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 106.766, 217.894, 168.836 ], "x_axis": [ -0.221, 0.594, -0.773 ], "y_axis": [ -0.885, 0.211, 0.416 ], "z_axis": [ 0.411, 0.776, 0.479 ], "quaternion": [ 0.606, -0.149, 0.488, 0.610 ] } }, { "index": 1816, "index_chain": 119, "chain_name": "z", "nt_resnum": 287, "nt_name": "U", "nt_code": "U", "nt_id": "///z/287", "linked_nts": [ "///z/286", "///z/288" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -53.578, "beta": 157.821, "gamma": 54.460, "delta": 84.928, "epsilon": -85.558, "zeta": -162.398, "epsilon_zeta": 76.839, "bb_type": "BII", "chi": -154.579, "glyco_bond": "anti", "C5prime_xyz": [ -1.264, 8.692, 0.226 ], "P_xyz": [ 1.345, 8.777, -0.055 ], "form": ".", "ssZp": 3.583, "Dp": 4.619, "splay_angle": 38.061, "splay_distance": 6.244, "splay_ratio": 0.327, "d22": null, "d64": null, "eta": -174.501, "theta": -143.100, "eta_prime": -158.959, "theta_prime": -147.306, "eta_base": -106.112, "theta_base": -151.053, "v0": 3.833, "v1": -24.108, "v2": 34.066, "v3": -32.778, "v4": 18.306, "amplitude": 34.886, "phase_angle": 12.447, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.756, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 107.570, 221.344, 168.661 ], "x_axis": [ -0.743, 0.606, -0.285 ], "y_axis": [ -0.424, -0.095, 0.901 ], "z_axis": [ 0.519, 0.790, 0.327 ], "quaternion": [ 0.350, 0.079, 0.574, 0.736 ] } }, { "index": 1817, "index_chain": 120, "chain_name": "z", "nt_resnum": 288, "nt_name": "A", "nt_code": "A", "nt_id": "///z/288", "linked_nts": [ "///z/287", "///z/289" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop", "alpha": 109.431, "beta": -120.096, "gamma": 167.146, "delta": 82.926, "epsilon": -152.131, "zeta": -78.247, "epsilon_zeta": -73.884, "bb_type": "BI", "chi": -167.701, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.611, 1.003 ], "P_xyz": [ 0.425, 9.189, -0.792 ], "form": "A", "ssZp": 4.504, "Dp": 4.577, "splay_angle": 19.927, "splay_distance": 3.063, "splay_ratio": 0.173, "d22": null, "d64": null, "eta": 139.071, "theta": -154.721, "eta_prime": 156.991, "theta_prime": -158.279, "eta_base": 164.392, "theta_base": -127.712, "v0": 2.900, "v1": -24.103, "v2": 34.920, "v3": -34.224, "v4": 19.775, "amplitude": 36.005, "phase_angle": 14.101, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 112.229, 224.713, 171.095 ], "x_axis": [ -0.879, 0.118, -0.462 ], "y_axis": [ -0.477, -0.232, 0.848 ], "z_axis": [ -0.007, 0.966, 0.260 ], "quaternion": [ 0.193, -0.152, 0.589, 0.770 ] } }, { "index": 1818, "index_chain": 121, "chain_name": "z", "nt_resnum": 289, "nt_name": "C", "nt_code": "C", "nt_id": "///z/289", "linked_nts": [ "///z/288", "///z/290" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,internal-loop", "alpha": -55.568, "beta": 160.614, "gamma": 75.374, "delta": 146.076, "epsilon": -137.817, "zeta": -87.349, "epsilon_zeta": -50.468, "bb_type": "BI", "chi": -139.289, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.761, -0.164 ], "P_xyz": [ 1.014, 8.852, 0.302 ], "form": "B", "ssZp": 1.589, "Dp": 1.692, "splay_angle": 25.780, "splay_distance": 4.362, "splay_ratio": 0.223, "d22": 5.432, "d64": 4.634, "eta": -173.524, "theta": -93.117, "eta_prime": -135.191, "theta_prime": -116.322, "eta_base": -96.600, "theta_base": -89.002, "v0": -19.950, "v1": 33.844, "v2": -34.192, "v3": 23.511, "v4": -2.451, "amplitude": 35.368, "phase_angle": 165.186, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.481, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 111.777, 227.707, 170.634 ], "x_axis": [ -0.988, -0.078, 0.132 ], "y_axis": [ 0.139, -0.093, 0.986 ], "z_axis": [ -0.065, 0.993, 0.103 ], "quaternion": [ -0.074, 0.023, 0.669, 0.739 ] } }, { "index": 1819, "index_chain": 122, "chain_name": "z", "nt_resnum": 290, "nt_name": "U", "nt_code": "U", "nt_id": "///z/290", "linked_nts": [ "///z/289", "///z/291" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,splayed-apart", "alpha": -69.809, "beta": 176.334, "gamma": 35.271, "delta": 141.855, "epsilon": -97.183, "zeta": -101.132, "epsilon_zeta": 3.950, "bb_type": "--", "chi": -82.397, "glyco_bond": "anti", "C5prime_xyz": [ -3.132, 7.415, -2.710 ], "P_xyz": [ -1.169, 8.899, -3.616 ], "form": ".", "ssZp": 0.677, "Dp": 0.927, "splay_angle": 172.076, "splay_distance": 18.906, "splay_ratio": 0.998, "d22": null, "d64": null, "eta": 168.740, "theta": -43.586, "eta_prime": -155.091, "theta_prime": -74.064, "eta_base": -120.999, "theta_base": 111.081, "v0": -25.885, "v1": 37.591, "v2": -34.344, "v3": 20.304, "v4": 3.301, "amplitude": 37.516, "phase_angle": 156.266, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.073, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 111.438, 231.898, 171.797 ], "x_axis": [ -0.739, -0.097, 0.667 ], "y_axis": [ 0.664, 0.069, 0.745 ], "z_axis": [ -0.118, 0.993, 0.014 ], "quaternion": [ -0.293, 0.211, 0.670, 0.649 ] } }, { "index": 1820, "index_chain": 123, "chain_name": "z", "nt_resnum": 291, "nt_name": "G", "nt_code": "G", "nt_id": "///z/291", "linked_nts": [ "///z/290", "///z/292" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,cap-donor,splayed-apart", "alpha": 84.828, "beta": 147.235, "gamma": -5.748, "delta": 83.244, "epsilon": -126.565, "zeta": -86.691, "epsilon_zeta": -39.874, "bb_type": "--", "chi": 164.857, "glyco_bond": "--", "C5prime_xyz": [ -1.676, 7.995, 2.428 ], "P_xyz": [ -0.200, 7.473, 4.535 ], "form": "A", "ssZp": 4.577, "Dp": 4.701, "splay_angle": 25.876, "splay_distance": 3.867, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": -139.250, "theta": -142.520, "eta_prime": -98.472, "theta_prime": -131.785, "eta_base": 102.900, "theta_base": -96.370, "v0": 3.370, "v1": -24.293, "v2": 34.759, "v3": -33.796, "v4": 19.210, "amplitude": 35.721, "phase_angle": 13.327, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 129.814, 234.818, 175.151 ], "x_axis": [ 0.156, -0.986, -0.055 ], "y_axis": [ -0.892, -0.165, 0.420 ], "z_axis": [ -0.423, -0.017, -0.906 ], "quaternion": [ 0.146, 0.746, -0.630, -0.160 ] } }, { "index": 1821, "index_chain": 124, "chain_name": "z", "nt_resnum": 292, "nt_name": "C", "nt_code": "C", "nt_id": "///z/292", "linked_nts": [ "///z/291", "///z/293" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop", "alpha": -70.514, "beta": 177.704, "gamma": 51.903, "delta": 83.824, "epsilon": -150.496, "zeta": -72.335, "epsilon_zeta": -78.161, "bb_type": "BI", "chi": -170.694, "glyco_bond": "anti", "C5prime_xyz": [ -1.087, 8.507, 1.197 ], "P_xyz": [ 1.468, 8.466, 1.808 ], "form": "A", "ssZp": 4.604, "Dp": 4.640, "splay_angle": 23.160, "splay_distance": 3.671, "splay_ratio": 0.204, "d22": 4.522, "d64": 4.708, "eta": 162.998, "theta": -142.954, "eta_prime": 175.078, "theta_prime": -142.263, "eta_base": -142.346, "theta_base": -126.461, "v0": 6.112, "v1": -26.732, "v2": 36.088, "v3": -33.551, "v4": 17.321, "amplitude": 36.561, "phase_angle": 9.219, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.638, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 130.005, 234.785, 171.288 ], "x_axis": [ -0.446, -0.841, 0.306 ], "y_axis": [ -0.739, 0.539, 0.404 ], "z_axis": [ -0.505, -0.046, -0.862 ], "quaternion": [ -0.240, -0.468, 0.844, 0.106 ] } }, { "index": 1822, "index_chain": 125, "chain_name": "z", "nt_resnum": 293, "nt_name": "C", "nt_code": "C", "nt_id": "///z/293", "linked_nts": [ "///z/292", "///z/294" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -64.132, "beta": 176.348, "gamma": 53.918, "delta": 81.007, "epsilon": -149.338, "zeta": -70.491, "epsilon_zeta": -78.847, "bb_type": "BI", "chi": -165.821, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.743, 0.865 ], "P_xyz": [ 1.166, 9.160, 1.357 ], "form": "A", "ssZp": 4.502, "Dp": 4.598, "splay_angle": 23.690, "splay_distance": 3.731, "splay_ratio": 0.206, "d22": 4.167, "d64": 4.181, "eta": 170.739, "theta": -143.258, "eta_prime": -177.022, "theta_prime": -140.985, "eta_base": -146.474, "theta_base": -107.760, "v0": 1.253, "v1": -23.328, "v2": 35.260, "v3": -35.508, "v4": 21.595, "amplitude": 36.810, "phase_angle": 16.683, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.980, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 129.929, 233.473, 167.860 ], "x_axis": [ -0.707, -0.474, 0.525 ], "y_axis": [ -0.451, 0.874, 0.182 ], "z_axis": [ -0.545, -0.108, -0.832 ], "quaternion": [ -0.289, -0.250, 0.924, 0.020 ] } }, { "index": 1823, "index_chain": 126, "chain_name": "z", "nt_resnum": 294, "nt_name": "U", "nt_code": "U", "nt_id": "///z/294", "linked_nts": [ "///z/293", "///z/295" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -63.732, "beta": 171.026, "gamma": 55.441, "delta": 81.347, "epsilon": -127.481, "zeta": -52.684, "epsilon_zeta": -74.798, "bb_type": "--", "chi": -162.512, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.705, 0.676 ], "P_xyz": [ 1.183, 9.105, 0.847 ], "form": ".", "ssZp": 4.404, "Dp": 4.715, "splay_angle": 54.797, "splay_distance": 8.552, "splay_ratio": 0.460, "d22": null, "d64": null, "eta": 172.938, "theta": -86.753, "eta_prime": -173.199, "theta_prime": -128.986, "eta_base": -127.328, "theta_base": 162.283, "v0": 2.146, "v1": -23.975, "v2": 35.488, "v3": -35.246, "v4": 20.888, "amplitude": 36.804, "phase_angle": 15.365, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.990, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 127.619, 231.613, 165.597 ], "x_axis": [ -0.815, 0.152, 0.559 ], "y_axis": [ 0.043, 0.978, -0.203 ], "z_axis": [ -0.577, -0.141, -0.804 ], "quaternion": [ -0.299, 0.051, 0.948, -0.091 ] } }, { "index": 1824, "index_chain": 127, "chain_name": "z", "nt_resnum": 295, "nt_name": "G", "nt_code": "G", "nt_id": "///z/295", "linked_nts": [ "///z/294", "///z/296" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": 175.839, "beta": 175.352, "gamma": 53.296, "delta": 147.282, "epsilon": -152.826, "zeta": 176.266, "epsilon_zeta": 30.908, "bb_type": "--", "chi": -136.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.860, 8.756, -0.299 ], "P_xyz": [ 0.375, 9.399, 0.925 ], "form": ".", "ssZp": 1.745, "Dp": 1.907, "splay_angle": 70.921, "splay_distance": 11.660, "splay_ratio": 0.582, "d22": null, "d64": null, "eta": 27.440, "theta": 165.115, "eta_prime": 77.761, "theta_prime": 160.224, "eta_base": 38.155, "theta_base": 159.093, "v0": -21.360, "v1": 35.786, "v2": -35.745, "v3": 24.342, "v4": -2.096, "amplitude": 37.112, "phase_angle": 164.403, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.231, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 131.367, 229.306, 158.264 ], "x_axis": [ 0.816, 0.433, -0.383 ], "y_axis": [ -0.467, 0.884, 0.006 ], "z_axis": [ 0.341, 0.174, 0.924 ], "quaternion": [ 0.952, -0.044, 0.190, 0.237 ] } }, { "index": 1825, "index_chain": 128, "chain_name": "z", "nt_resnum": 296, "nt_name": "A", "nt_code": "A", "nt_id": "///z/296", "linked_nts": [ "///z/295", "///z/297" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 152.559, "beta": 162.100, "gamma": -177.698, "delta": 147.659, "epsilon": -106.558, "zeta": -74.916, "epsilon_zeta": -31.642, "bb_type": "--", "chi": -178.370, "glyco_bond": "anti", "C5prime_xyz": [ -2.344, 8.199, 1.857 ], "P_xyz": [ -0.825, 10.283, 2.308 ], "form": ".", "ssZp": 0.557, "Dp": 1.043, "splay_angle": 86.812, "splay_distance": 13.218, "splay_ratio": 0.687, "d22": null, "d64": null, "eta": -136.046, "theta": -90.028, "eta_prime": -176.494, "theta_prime": -128.459, "eta_base": 168.709, "theta_base": -163.749, "v0": -21.512, "v1": 36.130, "v2": -36.119, "v3": 24.637, "v4": -2.167, "amplitude": 37.483, "phase_angle": 164.496, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 122.005, 222.874, 160.900 ], "x_axis": [ 0.700, -0.104, -0.706 ], "y_axis": [ 0.063, 0.994, -0.084 ], "z_axis": [ 0.711, 0.015, 0.703 ], "quaternion": [ 0.922, -0.027, 0.384, -0.045 ] } }, { "index": 1826, "index_chain": 129, "chain_name": "z", "nt_resnum": 297, "nt_name": "U", "nt_code": "U", "nt_id": "///z/297", "linked_nts": [ "///z/296", "///z/298" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": 102.115, "beta": -162.390, "gamma": 63.694, "delta": 146.864, "epsilon": -111.512, "zeta": -79.445, "epsilon_zeta": -32.066, "bb_type": "--", "chi": -116.020, "glyco_bond": "anti", "C5prime_xyz": [ -2.055, 8.436, -1.418 ], "P_xyz": [ 0.291, 9.428, -0.773 ], "form": ".", "ssZp": 1.155, "Dp": 1.194, "splay_angle": 130.635, "splay_distance": 17.166, "splay_ratio": 0.909, "d22": null, "d64": null, "eta": -13.015, "theta": -68.418, "eta_prime": 54.144, "theta_prime": -83.998, "eta_base": 60.152, "theta_base": -57.380, "v0": -21.522, "v1": 35.621, "v2": -35.356, "v3": 23.871, "v4": -1.659, "amplitude": 36.818, "phase_angle": 163.800, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 113.172, 224.644, 170.572 ], "x_axis": [ -0.795, 0.226, -0.563 ], "y_axis": [ 0.576, 0.571, -0.584 ], "z_axis": [ 0.190, -0.789, -0.584 ], "quaternion": [ 0.219, 0.233, 0.859, -0.400 ] } }, { "index": 1827, "index_chain": 130, "chain_name": "z", "nt_resnum": 298, "nt_name": "A", "nt_code": "A", "nt_id": "///z/298", "linked_nts": [ "///z/297", "///z/299" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -66.046, "beta": -164.756, "gamma": 62.447, "delta": 81.862, "epsilon": -132.896, "zeta": -60.320, "epsilon_zeta": -72.576, "bb_type": "BI", "chi": 178.172, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.279, 1.774 ], "P_xyz": [ 1.059, 8.274, 2.726 ], "form": ".", "ssZp": 4.760, "Dp": 4.756, "splay_angle": 32.921, "splay_distance": 5.019, "splay_ratio": 0.286, "d22": null, "d64": null, "eta": -173.309, "theta": -119.637, "eta_prime": -139.628, "theta_prime": -114.617, "eta_base": -116.261, "theta_base": -68.444, "v0": 5.366, "v1": -26.826, "v2": 36.956, "v3": -34.877, "v4": 18.622, "amplitude": 37.599, "phase_angle": 10.611, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.771, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 127.013, 227.355, 160.787 ], "x_axis": [ -0.236, 0.971, 0.045 ], "y_axis": [ -0.705, -0.203, 0.680 ], "z_axis": [ 0.669, 0.128, 0.732 ], "quaternion": [ 0.569, 0.242, 0.274, 0.737 ] } }, { "index": 1828, "index_chain": 131, "chain_name": "z", "nt_resnum": 299, "nt_name": "G", "nt_code": "G", "nt_id": "///z/299", "linked_nts": [ "///z/298", "///z/300" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -68.196, "beta": 177.624, "gamma": 54.978, "delta": 81.577, "epsilon": -140.976, "zeta": -74.577, "epsilon_zeta": -66.399, "bb_type": "BI", "chi": -166.989, "glyco_bond": "anti", "C5prime_xyz": [ -1.286, 8.653, 0.943 ], "P_xyz": [ 1.289, 8.949, 1.340 ], "form": "A", "ssZp": 4.587, "Dp": 4.700, "splay_angle": 27.615, "splay_distance": 4.267, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 164.374, "theta": -139.610, "eta_prime": -171.685, "theta_prime": -135.938, "eta_base": -102.909, "theta_base": -99.802, "v0": 3.897, "v1": -25.558, "v2": 36.286, "v3": -35.042, "v4": 19.658, "amplitude": 37.201, "phase_angle": 12.738, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.001, "frame": { "rmsd": 0.001, "origin": [ 128.483, 231.207, 163.650 ], "x_axis": [ -0.739, 0.345, 0.579 ], "y_axis": [ -0.187, -0.930, 0.316 ], "z_axis": [ 0.647, 0.125, 0.752 ], "quaternion": [ 0.144, 0.331, 0.119, 0.925 ] } }, { "index": 1829, "index_chain": 132, "chain_name": "z", "nt_resnum": 300, "nt_name": "G", "nt_code": "G", "nt_id": "///z/300", "linked_nts": [ "///z/299", "///z/301" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -59.569, "beta": 165.830, "gamma": 56.787, "delta": 81.396, "epsilon": -156.453, "zeta": -74.066, "epsilon_zeta": -82.387, "bb_type": "BI", "chi": -167.052, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.649, 0.943 ], "P_xyz": [ 1.338, 8.886, 1.003 ], "form": ".", "ssZp": 4.562, "Dp": 4.611, "splay_angle": 28.698, "splay_distance": 4.858, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 167.236, "theta": -119.985, "eta_prime": -173.286, "theta_prime": -128.370, "eta_base": -118.736, "theta_base": -109.451, "v0": 4.117, "v1": -25.843, "v2": 36.569, "v3": -35.184, "v4": 19.608, "amplitude": 37.449, "phase_angle": 12.442, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.926, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 129.532, 232.940, 167.405 ], "x_axis": [ -0.723, -0.367, 0.585 ], "y_axis": [ 0.348, -0.925, -0.151 ], "z_axis": [ 0.596, 0.095, 0.797 ], "quaternion": [ -0.193, 0.318, -0.015, 0.928 ] } }, { "index": 1830, "index_chain": 133, "chain_name": "z", "nt_resnum": 301, "nt_name": "G", "nt_code": "G", "nt_id": "///z/301", "linked_nts": [ "///z/300", "///z/302" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 167.308, "beta": -158.875, "gamma": 169.801, "delta": 81.603, "epsilon": -122.464, "zeta": -66.256, "epsilon_zeta": -56.209, "bb_type": "--", "chi": -178.564, "glyco_bond": "anti", "C5prime_xyz": [ -1.442, 8.439, 1.597 ], "P_xyz": [ 0.292, 10.088, 0.524 ], "form": ".", "ssZp": 4.736, "Dp": 4.765, "splay_angle": 30.161, "splay_distance": 4.648, "splay_ratio": 0.261, "d22": null, "d64": null, "eta": 169.810, "theta": -140.213, "eta_prime": -172.614, "theta_prime": -136.427, "eta_base": -131.070, "theta_base": -78.146, "v0": 4.139, "v1": -25.782, "v2": 36.407, "v3": -35.030, "v4": 19.496, "amplitude": 37.275, "phase_angle": 12.385, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.717, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 129.639, 234.380, 172.043 ], "x_axis": [ -0.419, -0.806, 0.418 ], "y_axis": [ 0.690, -0.582, -0.430 ], "z_axis": [ 0.590, 0.108, 0.800 ], "quaternion": [ -0.447, 0.301, -0.096, 0.837 ] } }, { "index": 1831, "index_chain": 134, "chain_name": "z", "nt_resnum": 302, "nt_name": "U", "nt_code": "U", "nt_id": "///z/302", "linked_nts": [ "///z/301", "///z/303" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -68.712, "beta": 164.511, "gamma": 57.848, "delta": 81.113, "epsilon": -149.261, "zeta": -106.334, "epsilon_zeta": -42.927, "bb_type": "BI", "chi": -164.356, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.660, 0.785 ], "P_xyz": [ 1.241, 8.985, 0.720 ], "form": ".", "ssZp": 4.539, "Dp": 4.655, "splay_angle": 40.850, "splay_distance": 7.401, "splay_ratio": 0.369, "d22": null, "d64": null, "eta": 153.089, "theta": -151.447, "eta_prime": -178.960, "theta_prime": -171.263, "eta_base": -97.892, "theta_base": 160.745, "v0": 3.538, "v1": -25.514, "v2": 36.557, "v3": -35.512, "v4": 20.175, "amplitude": 37.568, "phase_angle": 13.319, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.607, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 130.343, 231.108, 175.269 ], "x_axis": [ 0.339, -0.910, -0.237 ], "y_axis": [ 0.800, 0.412, -0.437 ], "z_axis": [ 0.496, -0.041, 0.868 ], "quaternion": [ 0.809, -0.122, 0.226, -0.528 ] } }, { "index": 1832, "index_chain": 135, "chain_name": "z", "nt_resnum": 303, "nt_name": "G", "nt_code": "G", "nt_id": "///z/303", "linked_nts": [ "///z/302", "///z/304" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 83.822, "beta": -135.600, "gamma": -111.828, "delta": 80.399, "epsilon": -152.368, "zeta": -72.582, "epsilon_zeta": -79.787, "bb_type": "BI", "chi": -163.913, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.728, 0.745 ], "P_xyz": [ -1.507, 11.210, -0.105 ], "form": "A", "ssZp": 4.527, "Dp": 4.634, "splay_angle": 23.120, "splay_distance": 3.674, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": -168.209, "theta": 158.435, "eta_prime": 179.577, "theta_prime": 174.847, "eta_base": 158.698, "theta_base": -150.012, "v0": 2.844, "v1": -25.203, "v2": 36.738, "v3": -36.117, "v4": 20.995, "amplitude": 37.932, "phase_angle": 14.416, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 126.333, 235.105, 180.035 ], "x_axis": [ 0.021, -0.989, 0.146 ], "y_axis": [ 0.967, -0.017, -0.253 ], "z_axis": [ 0.252, 0.146, 0.957 ], "quaternion": [ 0.700, -0.142, 0.038, -0.699 ] } }, { "index": 1833, "index_chain": 136, "chain_name": "z", "nt_resnum": 304, "nt_name": "C", "nt_code": "C", "nt_id": "///z/304", "linked_nts": [ "///z/303", "///z/305" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -62.994, "beta": 173.615, "gamma": 54.048, "delta": 79.825, "epsilon": -135.552, "zeta": -69.615, "epsilon_zeta": -65.937, "bb_type": "BI", "chi": -164.482, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.763, 0.778 ], "P_xyz": [ 1.192, 9.209, 1.085 ], "form": "A", "ssZp": 4.500, "Dp": 4.699, "splay_angle": 21.367, "splay_distance": 3.558, "splay_ratio": 0.190, "d22": 4.084, "d64": 3.860, "eta": 172.343, "theta": -133.874, "eta_prime": -177.025, "theta_prime": -124.824, "eta_base": -140.267, "theta_base": -108.508, "v0": 1.489, "v1": -24.082, "v2": 36.261, "v3": -36.392, "v4": 21.991, "amplitude": 37.796, "phase_angle": 16.384, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.981, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 125.650, 234.764, 183.629 ], "x_axis": [ 0.500, -0.856, -0.131 ], "y_axis": [ 0.818, 0.517, -0.251 ], "z_axis": [ 0.283, 0.019, 0.959 ], "quaternion": [ 0.863, -0.078, 0.120, -0.485 ] } }, { "index": 1834, "index_chain": 137, "chain_name": "z", "nt_resnum": 305, "nt_name": "U", "nt_code": "U", "nt_id": "///z/305", "linked_nts": [ "///z/304", "///z/306" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart", "alpha": -60.220, "beta": -170.045, "gamma": 52.849, "delta": 144.066, "epsilon": -152.025, "zeta": -0.990, "epsilon_zeta": -151.035, "bb_type": "--", "chi": -116.494, "glyco_bond": "anti", "C5prime_xyz": [ -2.176, 8.470, -1.434 ], "P_xyz": [ 0.055, 9.725, -0.856 ], "form": ".", "ssZp": 2.014, "Dp": 1.982, "splay_angle": 90.289, "splay_distance": 13.117, "splay_ratio": 0.710, "d22": 9.131, "d64": 11.274, "eta": 174.959, "theta": 4.701, "eta_prime": -154.355, "theta_prime": -72.758, "eta_base": -131.390, "theta_base": -121.383, "v0": -23.375, "v1": 36.222, "v2": -34.555, "v3": 21.947, "v4": 0.696, "amplitude": 36.732, "phase_angle": 160.172, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.844, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 126.224, 232.757, 186.510 ], "x_axis": [ 0.598, -0.383, -0.704 ], "y_axis": [ 0.589, 0.806, 0.062 ], "z_axis": [ 0.544, -0.452, 0.707 ], "quaternion": [ 0.882, 0.146, 0.354, -0.276 ] } }, { "index": 1835, "index_chain": 138, "chain_name": "z", "nt_resnum": 306, "nt_name": "U", "nt_code": "U", "nt_id": "///z/306", "linked_nts": [ "///z/305", "///z/307" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart", "alpha": 114.664, "beta": 142.241, "gamma": 58.136, "delta": 146.946, "epsilon": -102.205, "zeta": -148.591, "epsilon_zeta": 46.387, "bb_type": "--", "chi": -142.392, "glyco_bond": "anti", "C5prime_xyz": [ -1.866, 8.732, -0.022 ], "P_xyz": [ 0.655, 8.770, 0.723 ], "form": ".", "ssZp": 0.912, "Dp": 0.943, "splay_angle": 39.476, "splay_distance": 6.902, "splay_ratio": 0.338, "d22": null, "d64": null, "eta": -14.986, "theta": -138.773, "eta_prime": 72.244, "theta_prime": -170.586, "eta_base": 106.803, "theta_base": -164.338, "v0": -21.598, "v1": 35.899, "v2": -35.665, "v3": 24.116, "v4": -1.790, "amplitude": 37.113, "phase_angle": 163.944, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 131.786, 234.475, 198.264 ], "x_axis": [ -0.947, -0.275, 0.164 ], "y_axis": [ -0.316, 0.717, -0.622 ], "z_axis": [ 0.053, -0.641, -0.766 ], "quaternion": [ -0.030, -0.160, 0.926, -0.341 ] } }, { "index": 1836, "index_chain": 139, "chain_name": "z", "nt_resnum": 307, "nt_name": "G", "nt_code": "G", "nt_id": "///z/307", "linked_nts": [ "///z/306", "///z/308" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -53.140, "beta": 169.032, "gamma": -48.166, "delta": 81.895, "epsilon": -131.886, "zeta": -72.528, "epsilon_zeta": -59.358, "bb_type": "BI", "chi": -177.255, "glyco_bond": "anti", "C5prime_xyz": [ -1.380, 8.453, 1.537 ], "P_xyz": [ -0.420, 9.765, 3.594 ], "form": ".", "ssZp": 4.733, "Dp": 4.746, "splay_angle": 26.539, "splay_distance": 4.055, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 111.197, "theta": -160.365, "eta_prime": 106.880, "theta_prime": -145.024, "eta_base": 131.309, "theta_base": -79.194, "v0": 4.474, "v1": -25.954, "v2": 36.408, "v3": -34.824, "v4": 19.138, "amplitude": 37.202, "phase_angle": 11.861, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 138.511, 233.134, 197.479 ], "x_axis": [ -0.854, -0.026, 0.519 ], "y_axis": [ -0.193, 0.943, -0.270 ], "z_axis": [ -0.483, -0.331, -0.811 ], "quaternion": [ -0.264, -0.058, 0.950, -0.158 ] } }, { "index": 1837, "index_chain": 140, "chain_name": "z", "nt_resnum": 308, "nt_name": "C", "nt_code": "C", "nt_id": "///z/308", "linked_nts": [ "///z/307", "///z/309" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,phosphate", "alpha": -60.222, "beta": 161.434, "gamma": 55.792, "delta": 81.301, "epsilon": -143.772, "zeta": -79.334, "epsilon_zeta": -64.438, "bb_type": "BI", "chi": -170.194, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.614, 1.129 ], "P_xyz": [ 1.336, 8.801, 1.226 ], "form": "A", "ssZp": 4.637, "Dp": 4.687, "splay_angle": 22.725, "splay_distance": 3.506, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 162.145, "theta": -145.692, "eta_prime": -175.400, "theta_prime": -146.465, "eta_base": -103.836, "theta_base": -128.650, "v0": 3.689, "v1": -25.553, "v2": 36.505, "v3": -35.365, "v4": 19.968, "amplitude": 37.476, "phase_angle": 13.074, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.801, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 134.755, 231.976, 196.480 ], "x_axis": [ -0.684, 0.719, 0.125 ], "y_axis": [ 0.512, 0.595, -0.620 ], "z_axis": [ -0.520, -0.360, -0.775 ], "quaternion": [ -0.185, 0.352, 0.874, -0.280 ] } }, { "index": 1838, "index_chain": 141, "chain_name": "z", "nt_resnum": 309, "nt_name": "G", "nt_code": "G", "nt_id": "///z/309", "linked_nts": [ "///z/308", "///z/310" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -77.554, "beta": -173.261, "gamma": 47.161, "delta": 82.406, "epsilon": -150.370, "zeta": -75.932, "epsilon_zeta": -74.437, "bb_type": "BI", "chi": -172.420, "glyco_bond": "anti", "C5prime_xyz": [ -1.152, 8.525, 1.278 ], "P_xyz": [ 1.286, 8.646, 2.244 ], "form": "A", "ssZp": 4.637, "Dp": 4.653, "splay_angle": 24.505, "splay_distance": 3.751, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 159.201, "theta": -150.647, "eta_prime": 165.837, "theta_prime": -146.782, "eta_base": -162.282, "theta_base": -126.174, "v0": 5.247, "v1": -26.225, "v2": 36.109, "v3": -34.081, "v4": 18.216, "amplitude": 36.737, "phase_angle": 10.614, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.773, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 132.166, 230.083, 195.065 ], "x_axis": [ 0.044, 0.988, 0.148 ], "y_axis": [ 0.803, 0.054, -0.593 ], "z_axis": [ -0.594, 0.145, -0.791 ], "quaternion": [ -0.276, 0.667, 0.671, -0.167 ] } }, { "index": 1839, "index_chain": 142, "chain_name": "z", "nt_resnum": 310, "nt_name": "A", "nt_code": "A", "nt_id": "///z/310", "linked_nts": [ "///z/309", "///z/311" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -65.060, "beta": -177.633, "gamma": 47.166, "delta": 82.156, "epsilon": -165.414, "zeta": -76.448, "epsilon_zeta": -88.966, "bb_type": "BI", "chi": -170.453, "glyco_bond": "anti", "C5prime_xyz": [ -1.173, 8.517, 1.166 ], "P_xyz": [ 1.307, 8.669, 2.009 ], "form": ".", "ssZp": 4.519, "Dp": 4.533, "splay_angle": 28.646, "splay_distance": 4.877, "splay_ratio": 0.262, "d22": null, "d64": null, "eta": 166.854, "theta": -129.320, "eta_prime": 177.339, "theta_prime": -134.578, "eta_base": -150.238, "theta_base": -122.792, "v0": 4.873, "v1": -25.925, "v2": 35.999, "v3": -34.177, "v4": 18.508, "amplitude": 36.695, "phase_angle": 11.175, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.900, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 128.731, 230.350, 193.583 ], "x_axis": [ 0.570, 0.822, -0.002 ], "y_axis": [ 0.682, -0.474, -0.557 ], "z_axis": [ -0.458, 0.316, -0.831 ], "quaternion": [ -0.257, 0.848, 0.444, -0.136 ] } }, { "index": 1840, "index_chain": 143, "chain_name": "z", "nt_resnum": 311, "nt_name": "G", "nt_code": "G", "nt_id": "///z/311", "linked_nts": [ "///z/310", "///z/312" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 159.894, "beta": -153.480, "gamma": 179.112, "delta": 82.212, "epsilon": -122.938, "zeta": -117.974, "epsilon_zeta": -4.964, "bb_type": "--", "chi": 167.116, "glyco_bond": "anti", "C5prime_xyz": [ -1.732, 8.123, 2.318 ], "P_xyz": [ 0.100, 9.956, 1.913 ], "form": ".", "ssZp": 4.585, "Dp": 4.678, "splay_angle": 30.235, "splay_distance": 4.489, "splay_ratio": 0.261, "d22": null, "d64": null, "eta": 178.595, "theta": -159.122, "eta_prime": -167.776, "theta_prime": -148.752, "eta_base": -136.631, "theta_base": -101.718, "v0": 1.874, "v1": -23.392, "v2": 34.808, "v3": -34.691, "v4": 20.701, "amplitude": 36.159, "phase_angle": 15.707, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.882, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 125.218, 233.382, 192.083 ], "x_axis": [ 0.778, 0.578, -0.246 ], "y_axis": [ 0.458, -0.790, -0.408 ], "z_axis": [ -0.430, 0.205, -0.879 ], "quaternion": [ -0.165, 0.928, 0.279, -0.182 ] } }, { "index": 1841, "index_chain": 144, "chain_name": "z", "nt_resnum": 312, "nt_name": "U", "nt_code": "U", "nt_id": "///z/312", "linked_nts": [ "///z/311", "///z/313" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": 20.065, "beta": 120.887, "gamma": 6.704, "delta": 80.288, "epsilon": -140.585, "zeta": -63.453, "epsilon_zeta": -77.132, "bb_type": "BI", "chi": -168.472, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.652, 1.022 ], "P_xyz": [ 0.852, 8.311, 2.220 ], "form": ".", "ssZp": 4.566, "Dp": 4.667, "splay_angle": 26.745, "splay_distance": 4.247, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 168.409, "theta": -122.113, "eta_prime": -176.512, "theta_prime": -118.829, "eta_base": -120.880, "theta_base": -75.561, "v0": 2.019, "v1": -24.342, "v2": 36.182, "v3": -35.994, "v4": 21.422, "amplitude": 37.562, "phase_angle": 15.583, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 124.396, 235.564, 188.248 ], "x_axis": [ 0.905, -0.226, -0.360 ], "y_axis": [ -0.204, -0.974, 0.098 ], "z_axis": [ -0.373, -0.015, -0.928 ], "quaternion": [ 0.029, 0.976, -0.110, -0.188 ] } }, { "index": 1842, "index_chain": 145, "chain_name": "z", "nt_resnum": 313, "nt_name": "G", "nt_code": "G", "nt_id": "///z/313", "linked_nts": [ "///z/312", "///z/314" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -63.694, "beta": 165.647, "gamma": 57.491, "delta": 78.902, "epsilon": -138.034, "zeta": -84.612, "epsilon_zeta": -53.423, "bb_type": "BI", "chi": -167.391, "glyco_bond": "anti", "C5prime_xyz": [ -1.581, 8.742, 0.934 ], "P_xyz": [ 0.982, 9.283, 1.031 ], "form": "A", "ssZp": 4.574, "Dp": 4.694, "splay_angle": 23.308, "splay_distance": 3.747, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 164.844, "theta": -148.513, "eta_prime": -172.895, "theta_prime": -146.543, "eta_base": -106.730, "theta_base": -124.926, "v0": 0.875, "v1": -23.826, "v2": 36.464, "v3": -36.963, "v4": 22.737, "amplitude": 38.196, "phase_angle": 17.321, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.904, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 125.961, 235.019, 184.337 ], "x_axis": [ 0.482, -0.866, -0.132 ], "y_axis": [ -0.821, -0.499, 0.277 ], "z_axis": [ -0.305, -0.025, -0.952 ], "quaternion": [ 0.088, 0.856, -0.493, -0.128 ] } }, { "index": 1843, "index_chain": 146, "chain_name": "z", "nt_resnum": 314, "nt_name": "C", "nt_code": "C", "nt_id": "///z/314", "linked_nts": [ "///z/313", "///z/315" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,cap-acceptor,splayed-apart", "alpha": -56.678, "beta": 168.539, "gamma": 50.839, "delta": 79.838, "epsilon": -105.289, "zeta": -164.525, "epsilon_zeta": 59.236, "bb_type": "BII", "chi": -155.627, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.853, 0.240 ], "P_xyz": [ 1.111, 9.391, 0.264 ], "form": ".", "ssZp": 3.901, "Dp": 4.689, "splay_angle": 157.372, "splay_distance": 18.340, "splay_ratio": 0.981, "d22": 10.249, "d64": 12.757, "eta": 179.969, "theta": 175.138, "eta_prime": -173.718, "theta_prime": -177.651, "eta_base": -146.498, "theta_base": -103.889, "v0": -0.043, "v1": -22.637, "v2": 35.391, "v3": -36.402, "v4": 22.986, "amplitude": 37.356, "phase_angle": 18.665, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.802, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 126.645, 235.049, 180.653 ], "x_axis": [ 0.030, -0.983, 0.182 ], "y_axis": [ -0.983, 0.004, 0.182 ], "z_axis": [ -0.180, -0.185, -0.966 ], "quaternion": [ 0.130, 0.706, -0.697, 0.001 ] } }, { "index": 1844, "index_chain": 147, "chain_name": "z", "nt_resnum": 315, "nt_name": "C", "nt_code": "C", "nt_id": "///z/315", "linked_nts": [ "///z/314", "///z/316" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,phosphate,splayed-apart", "alpha": 59.897, "beta": 165.529, "gamma": 51.140, "delta": 80.506, "epsilon": -142.814, "zeta": -71.747, "epsilon_zeta": -71.067, "bb_type": "BI", "chi": -164.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.177, 8.690, 0.808 ], "P_xyz": [ 1.434, 8.898, 0.947 ], "form": "A", "ssZp": 4.552, "Dp": 4.701, "splay_angle": 26.281, "splay_distance": 4.146, "splay_ratio": 0.229, "d22": 4.299, "d64": 4.528, "eta": -53.581, "theta": -138.571, "eta_prime": -63.281, "theta_prime": -136.542, "eta_base": -129.767, "theta_base": -107.489, "v0": 3.808, "v1": -25.901, "v2": 36.965, "v3": -35.765, "v4": 20.146, "amplitude": 37.932, "phase_angle": 12.970, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.746, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 109.877, 235.587, 173.242 ], "x_axis": [ -0.210, -0.601, 0.771 ], "y_axis": [ 0.925, 0.132, 0.355 ], "z_axis": [ -0.315, 0.788, 0.529 ], "quaternion": [ 0.602, -0.180, -0.451, -0.634 ] } }, { "index": 1845, "index_chain": 148, "chain_name": "z", "nt_resnum": 316, "nt_name": "C", "nt_code": "C", "nt_id": "///z/316", "linked_nts": [ "///z/315", "///z/317" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -63.161, "beta": 169.700, "gamma": 59.865, "delta": 79.913, "epsilon": -141.706, "zeta": -79.315, "epsilon_zeta": -62.392, "bb_type": "BI", "chi": -161.727, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.774, 0.616 ], "P_xyz": [ 1.212, 9.208, 0.533 ], "form": "A", "ssZp": 4.470, "Dp": 4.686, "splay_angle": 21.282, "splay_distance": 3.419, "splay_ratio": 0.186, "d22": 4.355, "d64": 4.278, "eta": 171.380, "theta": -147.419, "eta_prime": -172.289, "theta_prime": -147.728, "eta_base": -127.270, "theta_base": -129.135, "v0": 1.962, "v1": -24.583, "v2": 36.613, "v3": -36.485, "v4": 21.753, "amplitude": 38.033, "phase_angle": 15.710, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.062, "frame": { "rmsd": 0.002, "origin": [ 107.396, 237.203, 176.144 ], "x_axis": [ 0.403, -0.457, 0.793 ], "y_axis": [ 0.851, 0.506, -0.141 ], "z_axis": [ -0.336, 0.731, 0.593 ], "quaternion": [ 0.791, -0.276, -0.357, -0.414 ] } }, { "index": 1846, "index_chain": 149, "chain_name": "z", "nt_resnum": 317, "nt_name": "C", "nt_code": "C", "nt_id": "///z/317", "linked_nts": [ "///z/316", "///z/318" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -73.703, "beta": 166.464, "gamma": 63.962, "delta": 79.085, "epsilon": -152.648, "zeta": -70.187, "epsilon_zeta": -82.461, "bb_type": "BI", "chi": -160.548, "glyco_bond": "anti", "C5prime_xyz": [ -1.480, 8.812, 0.523 ], "P_xyz": [ 1.065, 9.345, 0.191 ], "form": "A", "ssZp": 4.457, "Dp": 4.625, "splay_angle": 28.367, "splay_distance": 4.527, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 161.890, "theta": -146.284, "eta_prime": 174.934, "theta_prime": -146.966, "eta_base": -151.526, "theta_base": -123.785, "v0": 1.126, "v1": -24.303, "v2": 36.919, "v3": -37.263, "v4": 22.767, "amplitude": 38.593, "phase_angle": 16.937, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.748, "filter_rmsd": 0.061, "frame": { "rmsd": 0.003, "origin": [ 105.402, 238.432, 178.635 ], "x_axis": [ 0.814, -0.294, 0.501 ], "y_axis": [ 0.515, 0.764, -0.389 ], "z_axis": [ -0.268, 0.575, 0.773 ], "quaternion": [ 0.915, -0.263, -0.210, -0.221 ] } }, { "index": 1847, "index_chain": 150, "chain_name": "z", "nt_resnum": 318, "nt_name": "G", "nt_code": "G", "nt_id": "///z/318", "linked_nts": [ "///z/317", "///z/319" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -66.784, "beta": 171.546, "gamma": 64.503, "delta": 79.799, "epsilon": -149.290, "zeta": -63.161, "epsilon_zeta": -86.129, "bb_type": "BI", "chi": -169.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.648, 8.726, 1.064 ], "P_xyz": [ 0.895, 9.340, 1.247 ], "form": ".", "ssZp": 4.568, "Dp": 4.606, "splay_angle": 23.850, "splay_distance": 4.423, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 173.881, "theta": -115.243, "eta_prime": -171.555, "theta_prime": -134.593, "eta_base": -132.534, "theta_base": -123.739, "v0": 0.006, "v1": -22.768, "v2": 35.569, "v3": -36.561, "v4": 23.036, "amplitude": 37.527, "phase_angle": 18.592, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.771, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 104.632, 239.325, 183.005 ], "x_axis": [ 0.991, 0.064, 0.120 ], "y_axis": [ 0.031, 0.755, -0.655 ], "z_axis": [ -0.133, 0.653, 0.746 ], "quaternion": [ 0.934, -0.350, -0.068, 0.009 ] } }, { "index": 1848, "index_chain": 151, "chain_name": "z", "nt_resnum": 319, "nt_name": "G", "nt_code": "G", "nt_id": "///z/319", "linked_nts": [ "///z/318", "///z/320" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": 156.462, "beta": 162.576, "gamma": 174.062, "delta": 82.033, "epsilon": -129.173, "zeta": -83.274, "epsilon_zeta": -45.899, "bb_type": "BI", "chi": 179.627, "glyco_bond": "anti", "C5prime_xyz": [ -1.205, 8.357, 1.722 ], "P_xyz": [ 0.034, 10.589, 1.146 ], "form": "A", "ssZp": 4.743, "Dp": 4.756, "splay_angle": 24.406, "splay_distance": 3.804, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 143.979, "theta": -175.473, "eta_prime": 156.586, "theta_prime": -164.623, "eta_base": -172.048, "theta_base": -129.205, "v0": 5.295, "v1": -26.310, "v2": 36.233, "v3": -34.178, "v4": 18.221, "amplitude": 36.858, "phase_angle": 10.562, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.530, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 105.378, 239.307, 187.365 ], "x_axis": [ 0.826, 0.067, -0.560 ], "y_axis": [ -0.460, 0.655, -0.599 ], "z_axis": [ 0.327, 0.752, 0.572 ], "quaternion": [ 0.874, -0.387, 0.254, 0.151 ] } }, { "index": 1849, "index_chain": 152, "chain_name": "z", "nt_resnum": 320, "nt_name": "G", "nt_code": "G", "nt_id": "///z/320", "linked_nts": [ "///z/319", "///z/321" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -54.895, "beta": 164.455, "gamma": 49.527, "delta": 80.121, "epsilon": -143.548, "zeta": -83.230, "epsilon_zeta": -60.318, "bb_type": "BI", "chi": -169.798, "glyco_bond": "anti", "C5prime_xyz": [ -1.501, 8.641, 1.095 ], "P_xyz": [ 1.067, 9.013, 1.436 ], "form": "A", "ssZp": 4.625, "Dp": 4.686, "splay_angle": 25.117, "splay_distance": 3.908, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 165.549, "theta": -149.313, "eta_prime": -179.280, "theta_prime": -147.545, "eta_base": -136.244, "theta_base": -124.273, "v0": 2.755, "v1": -25.180, "v2": 36.812, "v3": -36.252, "v4": 21.119, "amplitude": 38.035, "phase_angle": 14.565, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.691, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 108.024, 240.778, 189.668 ], "x_axis": [ 0.379, 0.369, -0.849 ], "y_axis": [ -0.848, 0.506, -0.159 ], "z_axis": [ 0.371, 0.780, 0.504 ], "quaternion": [ 0.773, -0.304, 0.395, 0.394 ] } }, { "index": 1850, "index_chain": 153, "chain_name": "z", "nt_resnum": 321, "nt_name": "A", "nt_code": "A", "nt_id": "///z/321", "linked_nts": [ "///z/320", "///z/322" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -55.016, "beta": 159.832, "gamma": 58.411, "delta": 79.785, "epsilon": -147.412, "zeta": -80.972, "epsilon_zeta": -66.441, "bb_type": "BI", "chi": -170.390, "glyco_bond": "anti", "C5prime_xyz": [ -1.520, 8.613, 1.116 ], "P_xyz": [ 1.065, 9.033, 1.121 ], "form": "A", "ssZp": 4.626, "Dp": 4.660, "splay_angle": 24.532, "splay_distance": 3.816, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 171.759, "theta": -150.065, "eta_prime": -174.638, "theta_prime": -150.716, "eta_base": -136.552, "theta_base": -128.805, "v0": 2.073, "v1": -24.670, "v2": 36.635, "v3": -36.431, "v4": 21.667, "amplitude": 38.025, "phase_angle": 15.541, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.780, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 110.946, 242.868, 191.207 ], "x_axis": [ -0.097, 0.577, -0.811 ], "y_axis": [ -0.923, 0.253, 0.291 ], "z_axis": [ 0.372, 0.777, 0.508 ], "quaternion": [ 0.645, -0.189, 0.459, 0.582 ] } }, { "index": 1851, "index_chain": 154, "chain_name": "z", "nt_resnum": 322, "nt_name": "G", "nt_code": "G", "nt_id": "///z/322", "linked_nts": [ "///z/321", "///z/323" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop", "alpha": -58.335, "beta": 160.083, "gamma": 60.546, "delta": 80.786, "epsilon": -150.740, "zeta": -77.514, "epsilon_zeta": -73.226, "bb_type": "BI", "chi": -174.303, "glyco_bond": "anti", "C5prime_xyz": [ -1.594, 8.587, 1.345 ], "P_xyz": [ 0.993, 8.994, 1.470 ], "form": "A", "ssZp": 4.611, "Dp": 4.620, "splay_angle": 19.451, "splay_distance": 3.115, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": 170.752, "theta": -148.044, "eta_prime": -174.796, "theta_prime": -142.576, "eta_base": -135.619, "theta_base": -124.225, "v0": 2.069, "v1": -24.265, "v2": 36.008, "v3": -35.800, "v4": 21.263, "amplitude": 37.367, "phase_angle": 15.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.808, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 113.801, 245.264, 192.022 ], "x_axis": [ -0.541, 0.625, -0.562 ], "y_axis": [ -0.762, -0.081, 0.643 ], "z_axis": [ 0.356, 0.776, 0.520 ], "quaternion": [ 0.474, -0.070, 0.485, 0.732 ] } }, { "index": 1852, "index_chain": 155, "chain_name": "z", "nt_resnum": 323, "nt_name": "G", "nt_code": "G", "nt_id": "///z/323", "linked_nts": [ "///z/322", "///z/324" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": -53.869, "beta": 170.813, "gamma": 69.959, "delta": 146.644, "epsilon": -100.036, "zeta": 168.086, "epsilon_zeta": 91.877, "bb_type": "BII", "chi": -131.636, "glyco_bond": "anti", "C5prime_xyz": [ -1.955, 8.743, -0.589 ], "P_xyz": [ 0.554, 9.308, -0.062 ], "form": ".", "ssZp": 0.960, "Dp": 0.943, "splay_angle": 107.004, "splay_distance": 15.151, "splay_ratio": 0.805, "d22": null, "d64": null, "eta": -152.088, "theta": -162.991, "eta_prime": -126.222, "theta_prime": -171.348, "eta_base": -107.100, "theta_base": -136.124, "v0": -22.261, "v1": 36.258, "v2": -35.635, "v3": 23.691, "v4": -1.085, "amplitude": 37.283, "phase_angle": 162.898, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.724, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 115.736, 247.696, 191.806 ], "x_axis": [ -0.865, 0.473, -0.169 ], "y_axis": [ -0.287, -0.190, 0.939 ], "z_axis": [ 0.412, 0.860, 0.300 ], "quaternion": [ 0.248, 0.079, 0.586, 0.767 ] } }, { "index": 1853, "index_chain": 156, "chain_name": "z", "nt_resnum": 324, "nt_name": "U", "nt_code": "U", "nt_id": "///z/324", "linked_nts": [ "///z/323", "///z/325" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart", "alpha": 4.404, "beta": 142.458, "gamma": 62.957, "delta": 145.707, "epsilon": -85.278, "zeta": -54.157, "epsilon_zeta": -31.121, "bb_type": "--", "chi": -117.423, "glyco_bond": "anti", "C5prime_xyz": [ -2.051, 8.474, -1.370 ], "P_xyz": [ 0.562, 8.606, -1.509 ], "form": ".", "ssZp": 0.523, "Dp": 0.600, "splay_angle": 141.711, "splay_distance": 17.742, "splay_ratio": 0.945, "d22": 11.215, "d64": 14.184, "eta": -74.046, "theta": 11.335, "eta_prime": -64.483, "theta_prime": -48.333, "eta_base": -76.715, "theta_base": -170.031, "v0": -22.016, "v1": 35.728, "v2": -35.071, "v3": 23.283, "v4": -1.005, "amplitude": 36.717, "phase_angle": 162.779, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.001, "origin": [ 127.039, 247.664, 201.896 ], "x_axis": [ -0.387, 0.395, 0.834 ], "y_axis": [ -0.818, -0.564, -0.112 ], "z_axis": [ 0.426, -0.725, 0.541 ], "quaternion": [ 0.384, 0.399, -0.265, 0.789 ] } }, { "index": 1854, "index_chain": 157, "chain_name": "z", "nt_resnum": 325, "nt_name": "C", "nt_code": "C", "nt_id": "///z/325", "linked_nts": [ "///z/324", "///z/326" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": 107.246, "beta": 129.580, "gamma": 44.060, "delta": 80.741, "epsilon": -161.085, "zeta": -75.620, "epsilon_zeta": -85.465, "bb_type": "BI", "chi": -152.548, "glyco_bond": "anti", "C5prime_xyz": [ -1.330, 8.824, 0.088 ], "P_xyz": [ 1.246, 8.565, -0.340 ], "form": ".", "ssZp": 4.232, "Dp": 4.526, "splay_angle": 31.398, "splay_distance": 5.391, "splay_ratio": 0.278, "d22": 5.560, "d64": 6.281, "eta": -97.487, "theta": -121.200, "eta_prime": -33.238, "theta_prime": -135.024, "eta_base": 105.264, "theta_base": -131.221, "v0": 1.256, "v1": -23.310, "v2": 35.254, "v3": -35.496, "v4": 21.606, "amplitude": 36.805, "phase_angle": 16.693, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 125.039, 233.720, 191.109 ], "x_axis": [ 0.833, 0.543, -0.111 ], "y_axis": [ -0.352, 0.673, 0.650 ], "z_axis": [ 0.427, -0.502, 0.752 ], "quaternion": [ 0.902, 0.319, 0.149, 0.248 ] } }, { "index": 1855, "index_chain": 158, "chain_name": "z", "nt_resnum": 326, "nt_name": "U", "nt_code": "U", "nt_id": "///z/326", "linked_nts": [ "///z/325", "///z/327" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 172.027, "beta": -168.093, "gamma": 174.213, "delta": 81.321, "epsilon": -124.209, "zeta": -78.244, "epsilon_zeta": -45.965, "bb_type": "--", "chi": -161.106, "glyco_bond": "anti", "C5prime_xyz": [ -1.308, 8.696, 0.603 ], "P_xyz": [ -0.002, 10.285, -1.025 ], "form": ".", "ssZp": 4.354, "Dp": 4.739, "splay_angle": 23.082, "splay_distance": 4.028, "splay_ratio": 0.208, "d22": 4.140, "d64": 4.119, "eta": 176.975, "theta": -128.289, "eta_prime": -172.986, "theta_prime": -140.669, "eta_base": -150.738, "theta_base": -118.802, "v0": 2.910, "v1": -24.690, "v2": 35.893, "v3": -35.214, "v4": 20.386, "amplitude": 37.028, "phase_angle": 14.223, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.667, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 128.666, 230.404, 193.325 ], "x_axis": [ 0.660, 0.738, 0.144 ], "y_axis": [ -0.612, 0.415, 0.674 ], "z_axis": [ 0.437, -0.533, 0.725 ], "quaternion": [ 0.837, 0.360, 0.087, 0.403 ] } }, { "index": 1856, "index_chain": 159, "chain_name": "z", "nt_resnum": 327, "nt_name": "C", "nt_code": "C", "nt_id": "///z/327", "linked_nts": [ "///z/326", "///z/328" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 160.995, "beta": -174.620, "gamma": 162.496, "delta": 81.223, "epsilon": -156.340, "zeta": -90.442, "epsilon_zeta": -65.897, "bb_type": "BI", "chi": -156.350, "glyco_bond": "anti", "C5prime_xyz": [ -1.288, 8.789, 0.304 ], "P_xyz": [ 0.076, 10.145, -1.478 ], "form": "A", "ssZp": 4.334, "Dp": 4.572, "splay_angle": 28.053, "splay_distance": 4.537, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 134.623, "theta": -154.320, "eta_prime": 160.936, "theta_prime": -157.862, "eta_base": -158.933, "theta_base": -129.466, "v0": 2.075, "v1": -23.907, "v2": 35.442, "v3": -35.229, "v4": 20.912, "amplitude": 36.772, "phase_angle": 15.456, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.164, "filter_rmsd": 0.064, "frame": { "rmsd": 0.002, "origin": [ 132.314, 230.293, 195.030 ], "x_axis": [ -0.095, 0.995, 0.027 ], "y_axis": [ -0.691, -0.085, 0.718 ], "z_axis": [ 0.717, 0.049, 0.696 ], "quaternion": [ 0.616, 0.271, 0.280, 0.685 ] } }, { "index": 1857, "index_chain": 160, "chain_name": "z", "nt_resnum": 328, "nt_name": "G", "nt_code": "G", "nt_id": "///z/328", "linked_nts": [ "///z/327", "///z/329" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet", "alpha": 165.115, "beta": -142.542, "gamma": 159.736, "delta": 82.347, "epsilon": -160.153, "zeta": -76.221, "epsilon_zeta": -83.932, "bb_type": "BI", "chi": 174.177, "glyco_bond": "anti", "C5prime_xyz": [ -1.675, 8.321, 1.971 ], "P_xyz": [ 0.542, 9.485, 1.196 ], "form": ".", "ssZp": 4.345, "Dp": 4.501, "splay_angle": 28.706, "splay_distance": 4.338, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 156.279, "theta": -130.124, "eta_prime": -179.964, "theta_prime": -132.385, "eta_base": -132.020, "theta_base": -85.443, "v0": 1.626, "v1": -23.004, "v2": 34.373, "v3": -34.433, "v4": 20.700, "amplitude": 35.774, "phase_angle": 16.084, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.265, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 135.654, 232.488, 197.180 ], "x_axis": [ -0.687, 0.714, 0.138 ], "y_axis": [ -0.557, -0.639, 0.531 ], "z_axis": [ 0.467, 0.288, 0.836 ], "quaternion": [ 0.357, 0.170, 0.230, 0.889 ] } }, { "index": 1858, "index_chain": 161, "chain_name": "z", "nt_resnum": 329, "nt_name": "U", "nt_code": "U", "nt_id": "///z/329", "linked_nts": [ "///z/328", "///z/330" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate,splayed-apart", "alpha": 178.011, "beta": -143.203, "gamma": 158.960, "delta": 148.771, "epsilon": -149.089, "zeta": -104.347, "epsilon_zeta": -44.742, "bb_type": "BI", "chi": -162.113, "glyco_bond": "anti", "C5prime_xyz": [ -1.857, 8.517, 1.109 ], "P_xyz": [ 0.737, 8.899, 1.022 ], "form": ".", "ssZp": 1.284, "Dp": 1.818, "splay_angle": 122.612, "splay_distance": 15.069, "splay_ratio": 0.878, "d22": null, "d64": null, "eta": 167.462, "theta": -119.811, "eta_prime": -138.721, "theta_prime": -170.637, "eta_base": -74.607, "theta_base": -125.554, "v0": -19.555, "v1": 34.800, "v2": -35.891, "v3": 25.544, "v4": -3.948, "amplitude": 36.789, "phase_angle": 167.315, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.371, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 135.522, 235.360, 200.428 ], "x_axis": [ -0.870, -0.153, 0.468 ], "y_axis": [ 0.258, -0.951, 0.169 ], "z_axis": [ 0.420, 0.267, 0.867 ], "quaternion": [ -0.107, 0.231, 0.113, 0.960 ] } }, { "index": 1859, "index_chain": 162, "chain_name": "z", "nt_resnum": 330, "nt_name": "A", "nt_code": "A", "nt_id": "///z/330", "linked_nts": [ "///z/329", null ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 167.549, "beta": 126.284, "gamma": -56.587, "delta": 147.877, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": 41.683, "glyco_bond": "syn", "C5prime_xyz": [ -5.422, 3.630, 0.162 ], "P_xyz": [ -7.040, 2.888, -1.768 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -20.274, "v1": 35.027, "v2": -35.579, "v3": 24.799, "v4": -3.058, "amplitude": 36.679, "phase_angle": 165.930, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 150.306, 232.989, 202.126 ], "x_axis": [ 0.964, 0.240, -0.109 ], "y_axis": [ -0.171, 0.251, -0.953 ], "z_axis": [ -0.202, 0.938, 0.283 ], "quaternion": [ 0.790, -0.598, -0.029, 0.130 ] } } ], "num_hbonds": 7535, "hbonds": [ { "index": 1, "atom1_serNum": 8, "atom2_serNum": 57, "donAcc_type": "acceptable", "distance": 3.679, "atom1_id": "///2/1/O2'", "atom2_id": "///2/3/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2, "atom1_serNum": 20, "atom2_serNum": 7248, "donAcc_type": "questionable", "distance": 3.295, "atom1_id": "///2/2/OP2", "atom2_id": "///2/418/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3, "atom1_serNum": 28, "atom2_serNum": 40952, "donAcc_type": "acceptable", "distance": 2.921, "atom1_id": "///2/2/O2'", "atom2_id": "///D/224/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4, "atom1_serNum": 50, "atom2_serNum": 66, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///2/3/O2'", "atom2_id": "///2/4/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5, "atom1_serNum": 50, "atom2_serNum": 51976, "donAcc_type": "acceptable", "distance": 2.926, "atom1_id": "///2/3/O2'", "atom2_id": "///K/17/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 6, "atom1_serNum": 62, "atom2_serNum": 40962, "donAcc_type": "standard", "distance": 3.757, "atom1_id": "///2/4/OP2", "atom2_id": "///D/226/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 7, "atom1_serNum": 70, "atom2_serNum": 51987, "donAcc_type": "acceptable", "distance": 2.806, "atom1_id": "///2/4/O2'", "atom2_id": "///K/18/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 8, "atom1_serNum": 74, "atom2_serNum": 416, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///2/4/O2", "atom2_id": "///2/20/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 9, "atom1_serNum": 75, "atom2_serNum": 414, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/4/N3", "atom2_id": "///2/20/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 10, "atom1_serNum": 77, "atom2_serNum": 413, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///2/4/N4", "atom2_id": "///2/20/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 11, "atom1_serNum": 82, "atom2_serNum": 40993, "donAcc_type": "acceptable", "distance": 2.797, "atom1_id": "///2/5/OP2", "atom2_id": "///D/230/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 12, "atom1_serNum": 90, "atom2_serNum": 11197, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///2/5/O2'", "atom2_id": "///2/602/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 13, "atom1_serNum": 90, "atom2_serNum": 11199, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///2/5/O2'", "atom2_id": "///2/602/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 14, "atom1_serNum": 94, "atom2_serNum": 11199, "donAcc_type": "acceptable", "distance": 3.200, "atom1_id": "///2/5/O2", "atom2_id": "///2/602/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 15, "atom1_serNum": 95, "atom2_serNum": 392, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///2/5/N3", "atom2_id": "///2/19/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 16, "atom1_serNum": 97, "atom2_serNum": 391, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///2/5/O4", "atom2_id": "///2/19/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 17, "atom1_serNum": 110, "atom2_serNum": 11186, "donAcc_type": "acceptable", "distance": 3.191, "atom1_id": "///2/6/O2'", "atom2_id": "///2/601/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 18, "atom1_serNum": 117, "atom2_serNum": 371, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/6/O6", "atom2_id": "///2/18/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 19, "atom1_serNum": 118, "atom2_serNum": 369, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/6/N1", "atom2_id": "///2/18/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 20, "atom1_serNum": 120, "atom2_serNum": 368, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///2/6/N2", "atom2_id": "///2/18/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 21, "atom1_serNum": 120, "atom2_serNum": 11608, "donAcc_type": "acceptable", "distance": 3.862, "atom1_id": "///2/6/N2", "atom2_id": "///2/621/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 22, "atom1_serNum": 133, "atom2_serNum": 22231, "donAcc_type": "acceptable", "distance": 3.307, "atom1_id": "///2/7/O2'", "atom2_id": "///2/1195/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 23, "atom1_serNum": 140, "atom2_serNum": 351, "donAcc_type": "standard", "distance": 3.575, "atom1_id": "///2/7/O6", "atom2_id": "///2/17/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 24, "atom1_serNum": 141, "atom2_serNum": 349, "donAcc_type": "standard", "distance": 3.326, "atom1_id": "///2/7/N1", "atom2_id": "///2/17/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 25, "atom1_serNum": 143, "atom2_serNum": 348, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///2/7/N2", "atom2_id": "///2/17/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 26, "atom1_serNum": 160, "atom2_serNum": 22253, "donAcc_type": "questionable", "distance": 2.773, "atom1_id": "///2/8/O2", "atom2_id": "///2/1196/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 27, "atom1_serNum": 161, "atom2_serNum": 22265, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///2/8/N3", "atom2_id": "///2/1196/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 28, "atom1_serNum": 163, "atom2_serNum": 308, "donAcc_type": "questionable", "distance": 2.749, "atom1_id": "///2/8/O4", "atom2_id": "///2/15/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 29, "atom1_serNum": 163, "atom2_serNum": 22268, "donAcc_type": "standard", "distance": 2.631, "atom1_id": "///2/8/O4", "atom2_id": "///2/1196/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 30, "atom1_serNum": 176, "atom2_serNum": 223, "donAcc_type": "acceptable", "distance": 2.868, "atom1_id": "///2/9/O2'", "atom2_id": "///2/11/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 31, "atom1_serNum": 181, "atom2_serNum": 233, "donAcc_type": "standard", "distance": 2.603, "atom1_id": "///2/9/N3", "atom2_id": "///2/12/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 32, "atom1_serNum": 192, "atom2_serNum": 32726, "donAcc_type": "acceptable", "distance": 2.839, "atom1_id": "///2/10/O4'", "atom2_id": "///2/1697/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 33, "atom1_serNum": 196, "atom2_serNum": 40126, "donAcc_type": "acceptable", "distance": 2.475, "atom1_id": "///2/10/O2'", "atom2_id": "///D/113/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 34, "atom1_serNum": 204, "atom2_serNum": 22400, "donAcc_type": "standard", "distance": 3.263, "atom1_id": "///2/10/N1", "atom2_id": "///2/1202/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 35, "atom1_serNum": 206, "atom2_serNum": 22397, "donAcc_type": "standard", "distance": 3.308, "atom1_id": "///2/10/N2", "atom2_id": "///2/1202/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 36, "atom1_serNum": 219, "atom2_serNum": 40122, "donAcc_type": "acceptable", "distance": 3.062, "atom1_id": "///2/11/O2'", "atom2_id": "///D/113/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 37, "atom1_serNum": 226, "atom2_serNum": 22359, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///2/11/N6", "atom2_id": "///2/1200/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 38, "atom1_serNum": 226, "atom2_serNum": 22380, "donAcc_type": "standard", "distance": 2.784, "atom1_id": "///2/11/N6", "atom2_id": "///2/1201/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 39, "atom1_serNum": 227, "atom2_serNum": 22378, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///2/11/N1", "atom2_id": "///2/1201/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 40, "atom1_serNum": 229, "atom2_serNum": 25708, "donAcc_type": "acceptable", "distance": 2.817, "atom1_id": "///2/11/N3", "atom2_id": "///2/1357/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 41, "atom1_serNum": 241, "atom2_serNum": 25685, "donAcc_type": "acceptable", "distance": 3.193, "atom1_id": "///2/12/O2'", "atom2_id": "///2/1356/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 42, "atom1_serNum": 241, "atom2_serNum": 25696, "donAcc_type": "acceptable", "distance": 2.867, "atom1_id": "///2/12/O2'", "atom2_id": "///2/1356/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 43, "atom1_serNum": 245, "atom2_serNum": 25695, "donAcc_type": "standard", "distance": 2.476, "atom1_id": "///2/12/O2", "atom2_id": "///2/1356/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 44, "atom1_serNum": 246, "atom2_serNum": 22337, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///2/12/N3", "atom2_id": "///2/1199/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 45, "atom1_serNum": 246, "atom2_serNum": 22359, "donAcc_type": "standard", "distance": 3.117, "atom1_id": "///2/12/N3", "atom2_id": "///2/1200/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 46, "atom1_serNum": 248, "atom2_serNum": 22336, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///2/12/O4", "atom2_id": "///2/1199/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 47, "atom1_serNum": 259, "atom2_serNum": 41026, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///2/13/O3'", "atom2_id": "///D/235/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 48, "atom1_serNum": 261, "atom2_serNum": 21121, "donAcc_type": "acceptable", "distance": 3.338, "atom1_id": "///2/13/O2'", "atom2_id": "///2/1143/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 49, "atom1_serNum": 261, "atom2_serNum": 25670, "donAcc_type": "acceptable", "distance": 2.592, "atom1_id": "///2/13/O2'", "atom2_id": "///2/1355/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 50, "atom1_serNum": 261, "atom2_serNum": 25672, "donAcc_type": "acceptable", "distance": 3.296, "atom1_id": "///2/13/O2'", "atom2_id": "///2/1355/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 51, "atom1_serNum": 265, "atom2_serNum": 22316, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///2/13/O2", "atom2_id": "///2/1198/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 52, "atom1_serNum": 266, "atom2_serNum": 22314, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/13/N3", "atom2_id": "///2/1198/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 53, "atom1_serNum": 268, "atom2_serNum": 22313, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///2/13/N4", "atom2_id": "///2/1198/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 54, "atom1_serNum": 272, "atom2_serNum": 40701, "donAcc_type": "standard", "distance": 3.119, "atom1_id": "///2/14/OP1", "atom2_id": "///D/190/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 55, "atom1_serNum": 272, "atom2_serNum": 41026, "donAcc_type": "standard", "distance": 3.443, "atom1_id": "///2/14/OP1", "atom2_id": "///D/235/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 56, "atom1_serNum": 281, "atom2_serNum": 12610, "donAcc_type": "acceptable", "distance": 2.912, "atom1_id": "///2/14/O2'", "atom2_id": "///2/668/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 57, "atom1_serNum": 285, "atom2_serNum": 22293, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///2/14/O2", "atom2_id": "///2/1197/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 58, "atom1_serNum": 286, "atom2_serNum": 22291, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/14/N3", "atom2_id": "///2/1197/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 59, "atom1_serNum": 288, "atom2_serNum": 22290, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///2/14/N4", "atom2_id": "///2/1197/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 60, "atom1_serNum": 306, "atom2_serNum": 22268, "donAcc_type": "questionable", "distance": 3.313, "atom1_id": "///2/15/N3", "atom2_id": "///2/1196/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 61, "atom1_serNum": 321, "atom2_serNum": 340, "donAcc_type": "acceptable", "distance": 3.102, "atom1_id": "///2/16/O2'", "atom2_id": "///2/17/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 62, "atom1_serNum": 321, "atom2_serNum": 21607, "donAcc_type": "acceptable", "distance": 2.873, "atom1_id": "///2/16/O2'", "atom2_id": "///2/1166/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 63, "atom1_serNum": 331, "atom2_serNum": 22243, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///2/16/N2", "atom2_id": "///2/1195/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 64, "atom1_serNum": 332, "atom2_serNum": 22246, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///2/16/N3", "atom2_id": "///2/1195/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 65, "atom1_serNum": 340, "atom2_serNum": 21607, "donAcc_type": "questionable", "distance": 3.139, "atom1_id": "///2/17/O4'", "atom2_id": "///2/1166/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 66, "atom1_serNum": 344, "atom2_serNum": 360, "donAcc_type": "acceptable", "distance": 2.967, "atom1_id": "///2/17/O2'", "atom2_id": "///2/18/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 67, "atom1_serNum": 344, "atom2_serNum": 22225, "donAcc_type": "acceptable", "distance": 2.459, "atom1_id": "///2/17/O2'", "atom2_id": "///2/1194/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 68, "atom1_serNum": 384, "atom2_serNum": 11604, "donAcc_type": "acceptable", "distance": 3.441, "atom1_id": "///2/19/O2'", "atom2_id": "///2/621/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 69, "atom1_serNum": 429, "atom2_serNum": 51969, "donAcc_type": "acceptable", "distance": 2.787, "atom1_id": "///2/21/O2'", "atom2_id": "///K/17/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 70, "atom1_serNum": 434, "atom2_serNum": 12290, "donAcc_type": "standard", "distance": 3.791, "atom1_id": "///2/21/N3", "atom2_id": "///2/653/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 71, "atom1_serNum": 436, "atom2_serNum": 12289, "donAcc_type": "standard", "distance": 3.852, "atom1_id": "///2/21/O4", "atom2_id": "///2/653/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 72, "atom1_serNum": 456, "atom2_serNum": 12269, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///2/22/N6", "atom2_id": "///2/652/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 73, "atom1_serNum": 457, "atom2_serNum": 12267, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///2/22/N1", "atom2_id": "///2/652/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 74, "atom1_serNum": 462, "atom2_serNum": 51957, "donAcc_type": "acceptable", "distance": 3.200, "atom1_id": "///2/23/OP1", "atom2_id": "///K/15/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 75, "atom1_serNum": 471, "atom2_serNum": 7207, "donAcc_type": "acceptable", "distance": 3.474, "atom1_id": "///2/23/O2'", "atom2_id": "///2/416/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 76, "atom1_serNum": 478, "atom2_serNum": 12246, "donAcc_type": "questionable", "distance": 2.445, "atom1_id": "///2/23/O6", "atom2_id": "///2/651/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 77, "atom1_serNum": 478, "atom2_serNum": 12247, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/23/O6", "atom2_id": "///2/651/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 78, "atom1_serNum": 479, "atom2_serNum": 12246, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///2/23/N1", "atom2_id": "///2/651/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 79, "atom1_serNum": 481, "atom2_serNum": 7194, "donAcc_type": "acceptable", "distance": 2.992, "atom1_id": "///2/23/N2", "atom2_id": "///2/415/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 80, "atom1_serNum": 481, "atom2_serNum": 7212, "donAcc_type": "standard", "distance": 3.633, "atom1_id": "///2/23/N2", "atom2_id": "///2/416/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 81, "atom1_serNum": 485, "atom2_serNum": 51925, "donAcc_type": "standard", "distance": 3.297, "atom1_id": "///2/24/OP1", "atom2_id": "///K/11/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 82, "atom1_serNum": 494, "atom2_serNum": 7194, "donAcc_type": "acceptable", "distance": 3.323, "atom1_id": "///2/24/O2'", "atom2_id": "///2/415/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 83, "atom1_serNum": 498, "atom2_serNum": 12228, "donAcc_type": "questionable", "distance": 3.132, "atom1_id": "///2/24/O2", "atom2_id": "///2/650/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 84, "atom1_serNum": 499, "atom2_serNum": 12227, "donAcc_type": "standard", "distance": 3.959, "atom1_id": "///2/24/N3", "atom2_id": "///2/650/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 85, "atom1_serNum": 501, "atom2_serNum": 521, "donAcc_type": "questionable", "distance": 2.954, "atom1_id": "///2/24/N4", "atom2_id": "///2/25/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 86, "atom1_serNum": 514, "atom2_serNum": 528, "donAcc_type": "acceptable", "distance": 2.889, "atom1_id": "///2/25/O2'", "atom2_id": "///2/26/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 87, "atom1_serNum": 514, "atom2_serNum": 529, "donAcc_type": "acceptable", "distance": 3.124, "atom1_id": "///2/25/O2'", "atom2_id": "///2/26/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 88, "atom1_serNum": 521, "atom2_serNum": 12207, "donAcc_type": "standard", "distance": 3.556, "atom1_id": "///2/25/N6", "atom2_id": "///2/649/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 89, "atom1_serNum": 522, "atom2_serNum": 12205, "donAcc_type": "standard", "distance": 3.268, "atom1_id": "///2/25/N1", "atom2_id": "///2/649/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 90, "atom1_serNum": 527, "atom2_serNum": 880, "donAcc_type": "standard", "distance": 3.107, "atom1_id": "///2/26/OP1", "atom2_id": "///2/42/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 91, "atom1_serNum": 541, "atom2_serNum": 12186, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///2/26/N3", "atom2_id": "///2/648/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 92, "atom1_serNum": 543, "atom2_serNum": 12185, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///2/26/O4", "atom2_id": "///2/648/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 93, "atom1_serNum": 547, "atom2_serNum": 8684, "donAcc_type": "acceptable", "distance": 3.581, "atom1_id": "///2/27/OP1", "atom2_id": "///2/484/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 94, "atom1_serNum": 556, "atom2_serNum": 8664, "donAcc_type": "acceptable", "distance": 3.345, "atom1_id": "///2/27/O2'", "atom2_id": "///2/483/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 95, "atom1_serNum": 563, "atom2_serNum": 12165, "donAcc_type": "standard", "distance": 3.544, "atom1_id": "///2/27/N6", "atom2_id": "///2/647/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 96, "atom1_serNum": 564, "atom2_serNum": 12163, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///2/27/N1", "atom2_id": "///2/647/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 97, "atom1_serNum": 578, "atom2_serNum": 594, "donAcc_type": "acceptable", "distance": 3.279, "atom1_id": "///2/28/O2'", "atom2_id": "///2/29/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 98, "atom1_serNum": 582, "atom2_serNum": 12143, "donAcc_type": "standard", "distance": 3.288, "atom1_id": "///2/28/O2", "atom2_id": "///2/646/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 99, "atom1_serNum": 583, "atom2_serNum": 12142, "donAcc_type": "standard", "distance": 3.211, "atom1_id": "///2/28/N3", "atom2_id": "///2/646/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 100, "atom1_serNum": 589, "atom2_serNum": 67409, "donAcc_type": "standard", "distance": 2.563, "atom1_id": "///2/29/OP1", "atom2_id": "///Y/124/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 101, "atom1_serNum": 605, "atom2_serNum": 12122, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///2/29/O6", "atom2_id": "///2/645/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 102, "atom1_serNum": 606, "atom2_serNum": 12120, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///2/29/N1", "atom2_id": "///2/645/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 103, "atom1_serNum": 608, "atom2_serNum": 12119, "donAcc_type": "standard", "distance": 2.707, "atom1_id": "///2/29/N2", "atom2_id": "///2/645/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 104, "atom1_serNum": 619, "atom2_serNum": 67505, "donAcc_type": "standard", "distance": 2.665, "atom1_id": "///2/30/O3'", "atom2_id": "///Y/137/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 105, "atom1_serNum": 621, "atom2_serNum": 11056, "donAcc_type": "acceptable", "distance": 2.498, "atom1_id": "///2/30/O2'", "atom2_id": "///2/596/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 106, "atom1_serNum": 625, "atom2_serNum": 12102, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///2/30/O2", "atom2_id": "///2/644/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 107, "atom1_serNum": 626, "atom2_serNum": 12100, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/30/N3", "atom2_id": "///2/644/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 108, "atom1_serNum": 628, "atom2_serNum": 12099, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///2/30/N4", "atom2_id": "///2/644/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 109, "atom1_serNum": 632, "atom2_serNum": 67505, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///2/31/OP1", "atom2_id": "///Y/137/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 110, "atom1_serNum": 637, "atom2_serNum": 11045, "donAcc_type": "acceptable", "distance": 3.211, "atom1_id": "///2/31/O4'", "atom2_id": "///2/595/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 111, "atom1_serNum": 641, "atom2_serNum": 12078, "donAcc_type": "acceptable", "distance": 2.979, "atom1_id": "///2/31/O2'", "atom2_id": "///2/643/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 112, "atom1_serNum": 645, "atom2_serNum": 9374, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/31/O2", "atom2_id": "///2/516/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 113, "atom1_serNum": 646, "atom2_serNum": 9371, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///2/31/N3", "atom2_id": "///2/516/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 114, "atom1_serNum": 681, "atom2_serNum": 10393, "donAcc_type": "acceptable", "distance": 2.841, "atom1_id": "///2/33/O2'", "atom2_id": "///2/564/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 115, "atom1_serNum": 685, "atom2_serNum": 12074, "donAcc_type": "questionable", "distance": 3.144, "atom1_id": "///2/33/N7", "atom2_id": "///2/643/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 116, "atom1_serNum": 709, "atom2_serNum": 9484, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///2/34/N3", "atom2_id": "///2/521/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 117, "atom1_serNum": 711, "atom2_serNum": 9483, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///2/34/O4", "atom2_id": "///2/521/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 118, "atom1_serNum": 715, "atom2_serNum": 10697, "donAcc_type": "questionable", "distance": 3.041, "atom1_id": "///2/35/OP1", "atom2_id": "///2/579/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 119, "atom1_serNum": 724, "atom2_serNum": 740, "donAcc_type": "acceptable", "distance": 3.371, "atom1_id": "///2/35/O2'", "atom2_id": "///2/36/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 120, "atom1_serNum": 728, "atom2_serNum": 9462, "donAcc_type": "questionable", "distance": 3.044, "atom1_id": "///2/35/O2", "atom2_id": "///2/520/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 121, "atom1_serNum": 729, "atom2_serNum": 9461, "donAcc_type": "standard", "distance": 3.675, "atom1_id": "///2/35/N3", "atom2_id": "///2/520/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 122, "atom1_serNum": 735, "atom2_serNum": 10686, "donAcc_type": "acceptable", "distance": 3.250, "atom1_id": "///2/36/OP1", "atom2_id": "///2/578/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 123, "atom1_serNum": 735, "atom2_serNum": 10702, "donAcc_type": "questionable", "distance": 3.314, "atom1_id": "///2/36/OP1", "atom2_id": "///2/579/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 124, "atom1_serNum": 744, "atom2_serNum": 14465, "donAcc_type": "acceptable", "distance": 3.463, "atom1_id": "///2/36/O2'", "atom2_id": "///2/826/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 125, "atom1_serNum": 749, "atom2_serNum": 9440, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///2/36/N3", "atom2_id": "///2/519/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 126, "atom1_serNum": 751, "atom2_serNum": 9439, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///2/36/O4", "atom2_id": "///2/519/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 127, "atom1_serNum": 764, "atom2_serNum": 51878, "donAcc_type": "acceptable", "distance": 3.261, "atom1_id": "///2/37/O2'", "atom2_id": "///K/6/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 128, "atom1_serNum": 768, "atom2_serNum": 9419, "donAcc_type": "standard", "distance": 2.737, "atom1_id": "///2/37/O2", "atom2_id": "///2/518/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 129, "atom1_serNum": 769, "atom2_serNum": 9417, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///2/37/N3", "atom2_id": "///2/518/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 130, "atom1_serNum": 771, "atom2_serNum": 9416, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///2/37/N4", "atom2_id": "///2/518/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 131, "atom1_serNum": 784, "atom2_serNum": 9396, "donAcc_type": "acceptable", "distance": 3.345, "atom1_id": "///2/38/O2'", "atom2_id": "///2/517/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 132, "atom1_serNum": 794, "atom2_serNum": 9396, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///2/38/N3", "atom2_id": "///2/517/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 133, "atom1_serNum": 810, "atom2_serNum": 9354, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///2/39/N7", "atom2_id": "///2/515/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 134, "atom1_serNum": 813, "atom2_serNum": 9344, "donAcc_type": "acceptable", "distance": 3.600, "atom1_id": "///2/39/N6", "atom2_id": "///2/515/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 135, "atom1_serNum": 828, "atom2_serNum": 8706, "donAcc_type": "acceptable", "distance": 2.373, "atom1_id": "///2/40/O2'", "atom2_id": "///2/485/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 136, "atom1_serNum": 835, "atom2_serNum": 9331, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///2/40/N6", "atom2_id": "///2/514/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 137, "atom1_serNum": 836, "atom2_serNum": 9329, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///2/40/N1", "atom2_id": "///2/514/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 138, "atom1_serNum": 842, "atom2_serNum": 8732, "donAcc_type": "questionable", "distance": 2.859, "atom1_id": "///2/41/OP2", "atom2_id": "///2/486/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 139, "atom1_serNum": 850, "atom2_serNum": 865, "donAcc_type": "acceptable", "distance": 2.603, "atom1_id": "///2/41/O2'", "atom2_id": "///2/42/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 140, "atom1_serNum": 857, "atom2_serNum": 8628, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/41/O6", "atom2_id": "///2/481/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 141, "atom1_serNum": 858, "atom2_serNum": 8626, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///2/41/N1", "atom2_id": "///2/481/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 142, "atom1_serNum": 860, "atom2_serNum": 922, "donAcc_type": "standard", "distance": 2.564, "atom1_id": "///2/41/N2", "atom2_id": "///2/44/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 143, "atom1_serNum": 860, "atom2_serNum": 8625, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///2/41/N2", "atom2_id": "///2/481/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 144, "atom1_serNum": 873, "atom2_serNum": 888, "donAcc_type": "acceptable", "distance": 2.440, "atom1_id": "///2/42/O2'", "atom2_id": "///2/43/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 145, "atom1_serNum": 873, "atom2_serNum": 891, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///2/42/O2'", "atom2_id": "///2/43/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 146, "atom1_serNum": 887, "atom2_serNum": 8713, "donAcc_type": "standard", "distance": 2.633, "atom1_id": "///2/43/OP2", "atom2_id": "///2/485/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 147, "atom1_serNum": 919, "atom2_serNum": 8621, "donAcc_type": "acceptable", "distance": 2.528, "atom1_id": "///2/44/O2", "atom2_id": "///2/481/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 148, "atom1_serNum": 919, "atom2_serNum": 8637, "donAcc_type": "questionable", "distance": 2.951, "atom1_id": "///2/44/O2", "atom2_id": "///2/482/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 149, "atom1_serNum": 920, "atom2_serNum": 8625, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///2/44/N3", "atom2_id": "///2/481/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 150, "atom1_serNum": 922, "atom2_serNum": 8713, "donAcc_type": "standard", "distance": 3.483, "atom1_id": "///2/44/O4", "atom2_id": "///2/485/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 151, "atom1_serNum": 935, "atom2_serNum": 8608, "donAcc_type": "acceptable", "distance": 3.278, "atom1_id": "///2/45/O2'", "atom2_id": "///2/480/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 152, "atom1_serNum": 943, "atom2_serNum": 8598, "donAcc_type": "acceptable", "distance": 3.137, "atom1_id": "///2/45/N1", "atom2_id": "///2/480/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 153, "atom1_serNum": 957, "atom2_serNum": 2086, "donAcc_type": "acceptable", "distance": 3.235, "atom1_id": "///2/46/O2'", "atom2_id": "///2/99/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 154, "atom1_serNum": 961, "atom2_serNum": 2050, "donAcc_type": "acceptable", "distance": 2.929, "atom1_id": "///2/46/N7", "atom2_id": "///2/97/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 155, "atom1_serNum": 964, "atom2_serNum": 2054, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///2/46/N6", "atom2_id": "///2/97/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 156, "atom1_serNum": 986, "atom2_serNum": 8585, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///2/47/O6", "atom2_id": "///2/479/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 157, "atom1_serNum": 987, "atom2_serNum": 8583, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///2/47/N1", "atom2_id": "///2/479/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 158, "atom1_serNum": 989, "atom2_serNum": 8582, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///2/47/N2", "atom2_id": "///2/479/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 159, "atom1_serNum": 1006, "atom2_serNum": 8565, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///2/48/O2", "atom2_id": "///2/478/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 160, "atom1_serNum": 1007, "atom2_serNum": 8563, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/48/N3", "atom2_id": "///2/478/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 161, "atom1_serNum": 1009, "atom2_serNum": 8562, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///2/48/N4", "atom2_id": "///2/478/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 162, "atom1_serNum": 1014, "atom2_serNum": 8412, "donAcc_type": "standard", "distance": 3.506, "atom1_id": "///2/49/OP2", "atom2_id": "///2/471/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 163, "atom1_serNum": 1022, "atom2_serNum": 1035, "donAcc_type": "acceptable", "distance": 2.887, "atom1_id": "///2/49/O2'", "atom2_id": "///2/50/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 164, "atom1_serNum": 1026, "atom2_serNum": 8542, "donAcc_type": "standard", "distance": 2.733, "atom1_id": "///2/49/O2", "atom2_id": "///2/477/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 165, "atom1_serNum": 1027, "atom2_serNum": 8540, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/49/N3", "atom2_id": "///2/477/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 166, "atom1_serNum": 1029, "atom2_serNum": 8437, "donAcc_type": "standard", "distance": 3.526, "atom1_id": "///2/49/N4", "atom2_id": "///2/473/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 167, "atom1_serNum": 1029, "atom2_serNum": 8539, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///2/49/N4", "atom2_id": "///2/477/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 168, "atom1_serNum": 1034, "atom2_serNum": 8432, "donAcc_type": "standard", "distance": 3.324, "atom1_id": "///2/50/OP2", "atom2_id": "///2/472/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 169, "atom1_serNum": 1046, "atom2_serNum": 8542, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///2/50/N7", "atom2_id": "///2/477/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 170, "atom1_serNum": 1049, "atom2_serNum": 8543, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///2/50/N6", "atom2_id": "///2/477/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 171, "atom1_serNum": 1068, "atom2_serNum": 8774, "donAcc_type": "questionable", "distance": 2.848, "atom1_id": "///2/51/O2", "atom2_id": "///2/488/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 172, "atom1_serNum": 1069, "atom2_serNum": 8518, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///2/51/N3", "atom2_id": "///2/476/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 173, "atom1_serNum": 1071, "atom2_serNum": 1091, "donAcc_type": "questionable", "distance": 3.018, "atom1_id": "///2/51/O4", "atom2_id": "///2/52/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 174, "atom1_serNum": 1071, "atom2_serNum": 8432, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///2/51/O4", "atom2_id": "///2/472/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 175, "atom1_serNum": 1071, "atom2_serNum": 8517, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/51/O4", "atom2_id": "///2/476/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 176, "atom1_serNum": 1084, "atom2_serNum": 68389, "donAcc_type": "acceptable", "distance": 2.557, "atom1_id": "///2/52/O2'", "atom2_id": "///Z/105/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 177, "atom1_serNum": 1091, "atom2_serNum": 8497, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///2/52/O6", "atom2_id": "///2/475/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 178, "atom1_serNum": 1092, "atom2_serNum": 8495, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/52/N1", "atom2_id": "///2/475/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 179, "atom1_serNum": 1094, "atom2_serNum": 8494, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///2/52/N2", "atom2_id": "///2/475/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 180, "atom1_serNum": 1094, "atom2_serNum": 9175, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///2/52/N2", "atom2_id": "///2/507/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 181, "atom1_serNum": 1107, "atom2_serNum": 9172, "donAcc_type": "acceptable", "distance": 2.697, "atom1_id": "///2/53/O2'", "atom2_id": "///2/507/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 182, "atom1_serNum": 1111, "atom2_serNum": 8477, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///2/53/O2", "atom2_id": "///2/474/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 183, "atom1_serNum": 1112, "atom2_serNum": 8475, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///2/53/N3", "atom2_id": "///2/474/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 184, "atom1_serNum": 1114, "atom2_serNum": 8474, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///2/53/N4", "atom2_id": "///2/474/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 185, "atom1_serNum": 1118, "atom2_serNum": 68447, "donAcc_type": "standard", "distance": 2.514, "atom1_id": "///2/54/OP1", "atom2_id": "///Z/111/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 186, "atom1_serNum": 1119, "atom2_serNum": 68455, "donAcc_type": "standard", "distance": 3.410, "atom1_id": "///2/54/OP2", "atom2_id": "///Z/112/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 187, "atom1_serNum": 1140, "atom2_serNum": 7980, "donAcc_type": "questionable", "distance": 3.219, "atom1_id": "///2/55/OP1", "atom2_id": "///2/451/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 188, "atom1_serNum": 1141, "atom2_serNum": 9145, "donAcc_type": "acceptable", "distance": 3.421, "atom1_id": "///2/55/OP2", "atom2_id": "///2/506/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 189, "atom1_serNum": 1153, "atom2_serNum": 1907, "donAcc_type": "standard", "distance": 2.414, "atom1_id": "///2/55/O2", "atom2_id": "///2/90/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 190, "atom1_serNum": 1160, "atom2_serNum": 68447, "donAcc_type": "standard", "distance": 2.431, "atom1_id": "///2/56/OP1", "atom2_id": "///Z/111/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 191, "atom1_serNum": 1161, "atom2_serNum": 68483, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///2/56/OP2", "atom2_id": "///Z/115/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 192, "atom1_serNum": 1169, "atom2_serNum": 9109, "donAcc_type": "acceptable", "distance": 3.191, "atom1_id": "///2/56/O2'", "atom2_id": "///2/504/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 193, "atom1_serNum": 1176, "atom2_serNum": 1884, "donAcc_type": "standard", "distance": 3.957, "atom1_id": "///2/56/O6", "atom2_id": "///2/89/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 194, "atom1_serNum": 1177, "atom2_serNum": 1882, "donAcc_type": "standard", "distance": 3.897, "atom1_id": "///2/56/N1", "atom2_id": "///2/89/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 195, "atom1_serNum": 1179, "atom2_serNum": 1881, "donAcc_type": "standard", "distance": 3.734, "atom1_id": "///2/56/N2", "atom2_id": "///2/89/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 196, "atom1_serNum": 1179, "atom2_serNum": 8990, "donAcc_type": "standard", "distance": 3.779, "atom1_id": "///2/56/N2", "atom2_id": "///2/499/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 197, "atom1_serNum": 1183, "atom2_serNum": 9099, "donAcc_type": "acceptable", "distance": 2.425, "atom1_id": "///2/57/OP1", "atom2_id": "///2/504/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 198, "atom1_serNum": 1190, "atom2_serNum": 9004, "donAcc_type": "standard", "distance": 3.155, "atom1_id": "///2/57/O3'", "atom2_id": "///2/499/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 199, "atom1_serNum": 1192, "atom2_serNum": 8994, "donAcc_type": "acceptable", "distance": 2.893, "atom1_id": "///2/57/O2'", "atom2_id": "///2/499/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 200, "atom1_serNum": 1192, "atom2_serNum": 9005, "donAcc_type": "acceptable", "distance": 2.934, "atom1_id": "///2/57/O2'", "atom2_id": "///2/499/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 201, "atom1_serNum": 1196, "atom2_serNum": 1862, "donAcc_type": "standard", "distance": 3.475, "atom1_id": "///2/57/O2", "atom2_id": "///2/88/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 202, "atom1_serNum": 1197, "atom2_serNum": 1861, "donAcc_type": "standard", "distance": 3.451, "atom1_id": "///2/57/N3", "atom2_id": "///2/88/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 203, "atom1_serNum": 1208, "atom2_serNum": 9017, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///2/58/O4'", "atom2_id": "///2/500/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 204, "atom1_serNum": 1219, "atom2_serNum": 1303, "donAcc_type": "standard", "distance": 3.500, "atom1_id": "///2/58/N4", "atom2_id": "///2/62/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 205, "atom1_serNum": 1232, "atom2_serNum": 1256, "donAcc_type": "acceptable", "distance": 3.104, "atom1_id": "///2/59/O2'", "atom2_id": "///2/60/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 206, "atom1_serNum": 1236, "atom2_serNum": 1278, "donAcc_type": "questionable", "distance": 3.178, "atom1_id": "///2/59/O2", "atom2_id": "///2/61/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 207, "atom1_serNum": 1239, "atom2_serNum": 1287, "donAcc_type": "questionable", "distance": 2.850, "atom1_id": "///2/59/O4", "atom2_id": "///2/62/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 208, "atom1_serNum": 1252, "atom2_serNum": 1270, "donAcc_type": "acceptable", "distance": 2.684, "atom1_id": "///2/60/O2'", "atom2_id": "///2/61/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 209, "atom1_serNum": 1252, "atom2_serNum": 5193, "donAcc_type": "acceptable", "distance": 2.916, "atom1_id": "///2/60/O2'", "atom2_id": "///2/316/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 210, "atom1_serNum": 1270, "atom2_serNum": 5189, "donAcc_type": "questionable", "distance": 3.013, "atom1_id": "///2/61/O4'", "atom2_id": "///2/316/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 211, "atom1_serNum": 1274, "atom2_serNum": 5173, "donAcc_type": "acceptable", "distance": 2.762, "atom1_id": "///2/61/O2'", "atom2_id": "///2/315/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 212, "atom1_serNum": 1274, "atom2_serNum": 5177, "donAcc_type": "acceptable", "distance": 2.771, "atom1_id": "///2/61/O2'", "atom2_id": "///2/315/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 213, "atom1_serNum": 1284, "atom2_serNum": 5503, "donAcc_type": "standard", "distance": 3.562, "atom1_id": "///2/61/N3", "atom2_id": "///2/335/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 214, "atom1_serNum": 1296, "atom2_serNum": 3415, "donAcc_type": "acceptable", "distance": 3.590, "atom1_id": "///2/62/O2'", "atom2_id": "///2/172/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 215, "atom1_serNum": 1303, "atom2_serNum": 1821, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///2/62/O6", "atom2_id": "///2/86/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 216, "atom1_serNum": 1304, "atom2_serNum": 1819, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///2/62/N1", "atom2_id": "///2/86/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 217, "atom1_serNum": 1306, "atom2_serNum": 1818, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///2/62/N2", "atom2_id": "///2/86/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 218, "atom1_serNum": 1306, "atom2_serNum": 3412, "donAcc_type": "standard", "distance": 3.270, "atom1_id": "///2/62/N2", "atom2_id": "///2/171/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 219, "atom1_serNum": 1319, "atom2_serNum": 3380, "donAcc_type": "acceptable", "distance": 3.053, "atom1_id": "///2/63/O2'", "atom2_id": "///2/170/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 220, "atom1_serNum": 1319, "atom2_serNum": 3390, "donAcc_type": "acceptable", "distance": 2.825, "atom1_id": "///2/63/O2'", "atom2_id": "///2/170/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 221, "atom1_serNum": 1324, "atom2_serNum": 1800, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///2/63/N3", "atom2_id": "///2/85/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 222, "atom1_serNum": 1326, "atom2_serNum": 1799, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///2/63/O4", "atom2_id": "///2/85/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 223, "atom1_serNum": 1330, "atom2_serNum": 48154, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///2/64/OP1", "atom2_id": "///H/177/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 224, "atom1_serNum": 1339, "atom2_serNum": 1732, "donAcc_type": "acceptable", "distance": 2.575, "atom1_id": "///2/64/O2'", "atom2_id": "///2/82/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 225, "atom1_serNum": 1346, "atom2_serNum": 1740, "donAcc_type": "standard", "distance": 2.619, "atom1_id": "///2/64/N6", "atom2_id": "///2/83/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 226, "atom1_serNum": 1347, "atom2_serNum": 1752, "donAcc_type": "questionable", "distance": 3.037, "atom1_id": "///2/64/N1", "atom2_id": "///2/83/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 227, "atom1_serNum": 1352, "atom2_serNum": 47810, "donAcc_type": "standard", "distance": 2.386, "atom1_id": "///2/65/OP1", "atom2_id": "///H/136/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 228, "atom1_serNum": 1361, "atom2_serNum": 1395, "donAcc_type": "acceptable", "distance": 2.757, "atom1_id": "///2/65/O2'", "atom2_id": "///2/67/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 229, "atom1_serNum": 1368, "atom2_serNum": 3360, "donAcc_type": "acceptable", "distance": 2.614, "atom1_id": "///2/65/N4", "atom2_id": "///2/169/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 230, "atom1_serNum": 1368, "atom2_serNum": 47794, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///2/65/N4", "atom2_id": "///H/134/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 231, "atom1_serNum": 1372, "atom2_serNum": 1735, "donAcc_type": "standard", "distance": 3.338, "atom1_id": "///2/66/OP1", "atom2_id": "///2/82/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 232, "atom1_serNum": 1385, "atom2_serNum": 1735, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///2/66/N7", "atom2_id": "///2/82/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 233, "atom1_serNum": 1395, "atom2_serNum": 48019, "donAcc_type": "standard", "distance": 3.628, "atom1_id": "///2/67/OP1", "atom2_id": "///H/160/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 234, "atom1_serNum": 1396, "atom2_serNum": 48116, "donAcc_type": "standard", "distance": 3.222, "atom1_id": "///2/67/OP2", "atom2_id": "///H/172/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 235, "atom1_serNum": 1404, "atom2_serNum": 1438, "donAcc_type": "acceptable", "distance": 3.363, "atom1_id": "///2/67/O2'", "atom2_id": "///2/69/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 236, "atom1_serNum": 1411, "atom2_serNum": 48043, "donAcc_type": "questionable", "distance": 2.945, "atom1_id": "///2/67/N4", "atom2_id": "///H/164/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 237, "atom1_serNum": 1431, "atom2_serNum": 1712, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///2/68/N6", "atom2_id": "///2/81/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 238, "atom1_serNum": 1432, "atom2_serNum": 1710, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///2/68/N1", "atom2_id": "///2/81/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 239, "atom1_serNum": 1437, "atom2_serNum": 48051, "donAcc_type": "standard", "distance": 3.132, "atom1_id": "///2/69/OP1", "atom2_id": "///H/164/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 240, "atom1_serNum": 1450, "atom2_serNum": 1692, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///2/69/O2", "atom2_id": "///2/80/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 241, "atom1_serNum": 1451, "atom2_serNum": 1690, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/69/N3", "atom2_id": "///2/80/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 242, "atom1_serNum": 1453, "atom2_serNum": 1689, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/69/N4", "atom2_id": "///2/80/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 243, "atom1_serNum": 1466, "atom2_serNum": 1667, "donAcc_type": "acceptable", "distance": 2.903, "atom1_id": "///2/70/O2'", "atom2_id": "///2/79/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 244, "atom1_serNum": 1476, "atom2_serNum": 1664, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///2/70/N2", "atom2_id": "///2/79/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 245, "atom1_serNum": 1477, "atom2_serNum": 1667, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///2/70/N3", "atom2_id": "///2/79/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 246, "atom1_serNum": 1496, "atom2_serNum": 48099, "donAcc_type": "standard", "distance": 3.366, "atom1_id": "///2/71/O6", "atom2_id": "///H/170/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 247, "atom1_serNum": 1512, "atom2_serNum": 1524, "donAcc_type": "acceptable", "distance": 3.001, "atom1_id": "///2/72/O2'", "atom2_id": "///2/73/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 248, "atom1_serNum": 1512, "atom2_serNum": 1544, "donAcc_type": "acceptable", "distance": 3.010, "atom1_id": "///2/72/O2'", "atom2_id": "///2/74/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 249, "atom1_serNum": 1519, "atom2_serNum": 48099, "donAcc_type": "questionable", "distance": 3.064, "atom1_id": "///2/72/N4", "atom2_id": "///H/170/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 250, "atom1_serNum": 1560, "atom2_serNum": 1609, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///2/74/N1", "atom2_id": "///2/77/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 251, "atom1_serNum": 1562, "atom2_serNum": 1609, "donAcc_type": "standard", "distance": 2.244, "atom1_id": "///2/74/N2", "atom2_id": "///2/77/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 252, "atom1_serNum": 1585, "atom2_serNum": 47972, "donAcc_type": "standard", "distance": 3.309, "atom1_id": "///2/75/N2", "atom2_id": "///H/155/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 253, "atom1_serNum": 1598, "atom2_serNum": 47973, "donAcc_type": "acceptable", "distance": 3.444, "atom1_id": "///2/76/O2'", "atom2_id": "///H/155/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 254, "atom1_serNum": 1618, "atom2_serNum": 48125, "donAcc_type": "acceptable", "distance": 2.220, "atom1_id": "///2/77/O2'", "atom2_id": "///H/174/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 255, "atom1_serNum": 1628, "atom2_serNum": 48138, "donAcc_type": "standard", "distance": 3.498, "atom1_id": "///2/77/N3", "atom2_id": "///H/176/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 256, "atom1_serNum": 1644, "atom2_serNum": 48137, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///2/78/O2", "atom2_id": "///H/175/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 257, "atom1_serNum": 1780, "atom2_serNum": 2955, "donAcc_type": "acceptable", "distance": 2.538, "atom1_id": "///2/84/N3", "atom2_id": "///2/150/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 258, "atom1_serNum": 1790, "atom2_serNum": 68510, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///2/85/O3'", "atom2_id": "///Z/118/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 259, "atom1_serNum": 1792, "atom2_serNum": 1810, "donAcc_type": "acceptable", "distance": 3.219, "atom1_id": "///2/85/O2'", "atom2_id": "///2/86/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 260, "atom1_serNum": 1792, "atom2_serNum": 2933, "donAcc_type": "acceptable", "distance": 2.653, "atom1_id": "///2/85/O2'", "atom2_id": "///2/149/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 261, "atom1_serNum": 1792, "atom2_serNum": 2943, "donAcc_type": "acceptable", "distance": 3.259, "atom1_id": "///2/85/O2'", "atom2_id": "///2/149/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 262, "atom1_serNum": 1805, "atom2_serNum": 68510, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///2/86/OP1", "atom2_id": "///Z/118/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 263, "atom1_serNum": 1814, "atom2_serNum": 3410, "donAcc_type": "acceptable", "distance": 3.013, "atom1_id": "///2/86/O2'", "atom2_id": "///2/171/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 264, "atom1_serNum": 1839, "atom2_serNum": 9025, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///2/87/N3", "atom2_id": "///2/500/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 265, "atom1_serNum": 1841, "atom2_serNum": 9024, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///2/87/O4", "atom2_id": "///2/500/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 266, "atom1_serNum": 1864, "atom2_serNum": 8994, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///2/88/N2", "atom2_id": "///2/499/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 267, "atom1_serNum": 1877, "atom2_serNum": 9008, "donAcc_type": "acceptable", "distance": 3.010, "atom1_id": "///2/89/O2'", "atom2_id": "///2/500/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 268, "atom1_serNum": 1888, "atom2_serNum": 7849, "donAcc_type": "standard", "distance": 3.082, "atom1_id": "///2/90/OP1", "atom2_id": "///2/445/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 269, "atom1_serNum": 1895, "atom2_serNum": 43200, "donAcc_type": "standard", "distance": 3.155, "atom1_id": "///2/90/O3'", "atom2_id": "///F/7/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 270, "atom1_serNum": 1911, "atom2_serNum": 7874, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///2/91/OP1", "atom2_id": "///2/446/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 271, "atom1_serNum": 1912, "atom2_serNum": 7872, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///2/91/OP2", "atom2_id": "///2/446/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 272, "atom1_serNum": 1928, "atom2_serNum": 47444, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///2/91/N1", "atom2_id": "///H/88/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 273, "atom1_serNum": 1934, "atom2_serNum": 43171, "donAcc_type": "standard", "distance": 3.759, "atom1_id": "///2/92/OP2", "atom2_id": "///F/3/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 274, "atom1_serNum": 1946, "atom2_serNum": 7829, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///2/92/N7", "atom2_id": "///2/444/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 275, "atom1_serNum": 1949, "atom2_serNum": 7830, "donAcc_type": "standard", "distance": 3.240, "atom1_id": "///2/92/N6", "atom2_id": "///2/444/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 276, "atom1_serNum": 1955, "atom2_serNum": 43161, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///2/93/OP1", "atom2_id": "///F/3/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 277, "atom1_serNum": 1956, "atom2_serNum": 43171, "donAcc_type": "standard", "distance": 3.294, "atom1_id": "///2/93/OP2", "atom2_id": "///F/3/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 278, "atom1_serNum": 1964, "atom2_serNum": 43192, "donAcc_type": "acceptable", "distance": 3.704, "atom1_id": "///2/93/O2'", "atom2_id": "///F/7/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 279, "atom1_serNum": 1964, "atom2_serNum": 43207, "donAcc_type": "acceptable", "distance": 2.628, "atom1_id": "///2/93/O2'", "atom2_id": "///F/8/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 280, "atom1_serNum": 1984, "atom2_serNum": 9191, "donAcc_type": "acceptable", "distance": 2.597, "atom1_id": "///2/94/O2'", "atom2_id": "///2/508/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 281, "atom1_serNum": 1998, "atom2_serNum": 43227, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///2/95/OP1", "atom2_id": "///F/10/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 282, "atom1_serNum": 2007, "atom2_serNum": 8467, "donAcc_type": "acceptable", "distance": 3.341, "atom1_id": "///2/95/O2'", "atom2_id": "///2/474/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 283, "atom1_serNum": 2014, "atom2_serNum": 7630, "donAcc_type": "standard", "distance": 2.609, "atom1_id": "///2/95/O6", "atom2_id": "///2/435/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 284, "atom1_serNum": 2015, "atom2_serNum": 7631, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///2/95/N1", "atom2_id": "///2/435/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 285, "atom1_serNum": 2017, "atom2_serNum": 8460, "donAcc_type": "standard", "distance": 2.690, "atom1_id": "///2/95/N2", "atom2_id": "///2/474/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 286, "atom1_serNum": 2034, "atom2_serNum": 7610, "donAcc_type": "standard", "distance": 3.649, "atom1_id": "///2/96/O2", "atom2_id": "///2/434/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 287, "atom1_serNum": 2034, "atom2_serNum": 8445, "donAcc_type": "acceptable", "distance": 2.298, "atom1_id": "///2/96/O2", "atom2_id": "///2/473/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 288, "atom1_serNum": 2035, "atom2_serNum": 7608, "donAcc_type": "standard", "distance": 3.475, "atom1_id": "///2/96/N3", "atom2_id": "///2/434/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 289, "atom1_serNum": 2037, "atom2_serNum": 7607, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///2/96/N4", "atom2_id": "///2/434/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 290, "atom1_serNum": 2046, "atom2_serNum": 8445, "donAcc_type": "acceptable", "distance": 3.036, "atom1_id": "///2/97/O4'", "atom2_id": "///2/473/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 291, "atom1_serNum": 2055, "atom2_serNum": 7586, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///2/97/N3", "atom2_id": "///2/433/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 292, "atom1_serNum": 2057, "atom2_serNum": 7585, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///2/97/O4", "atom2_id": "///2/433/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 293, "atom1_serNum": 2062, "atom2_serNum": 7430, "donAcc_type": "acceptable", "distance": 2.127, "atom1_id": "///2/98/OP2", "atom2_id": "///2/426/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 294, "atom1_serNum": 2066, "atom2_serNum": 2094, "donAcc_type": "questionable", "distance": 3.336, "atom1_id": "///2/98/O4'", "atom2_id": "///2/99/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 295, "atom1_serNum": 2070, "atom2_serNum": 7053, "donAcc_type": "acceptable", "distance": 3.195, "atom1_id": "///2/98/O2'", "atom2_id": "///2/409/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 296, "atom1_serNum": 2074, "atom2_serNum": 2097, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///2/98/O2", "atom2_id": "///2/99/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 297, "atom1_serNum": 2074, "atom2_serNum": 7565, "donAcc_type": "standard", "distance": 3.459, "atom1_id": "///2/98/O2", "atom2_id": "///2/432/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 298, "atom1_serNum": 2075, "atom2_serNum": 7563, "donAcc_type": "standard", "distance": 3.436, "atom1_id": "///2/98/N3", "atom2_id": "///2/432/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 299, "atom1_serNum": 2077, "atom2_serNum": 7562, "donAcc_type": "standard", "distance": 3.316, "atom1_id": "///2/98/N4", "atom2_id": "///2/432/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 300, "atom1_serNum": 2082, "atom2_serNum": 7052, "donAcc_type": "questionable", "distance": 3.088, "atom1_id": "///2/99/OP2", "atom2_id": "///2/409/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 301, "atom1_serNum": 2097, "atom2_serNum": 7588, "donAcc_type": "standard", "distance": 2.694, "atom1_id": "///2/99/N6", "atom2_id": "///2/433/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 302, "atom1_serNum": 2098, "atom2_serNum": 7578, "donAcc_type": "acceptable", "distance": 3.687, "atom1_id": "///2/99/N1", "atom2_id": "///2/433/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 303, "atom1_serNum": 2119, "atom2_serNum": 7565, "donAcc_type": "standard", "distance": 3.516, "atom1_id": "///2/100/O4", "atom2_id": "///2/432/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 304, "atom1_serNum": 2123, "atom2_serNum": 50308, "donAcc_type": "standard", "distance": 3.316, "atom1_id": "///2/101/OP1", "atom2_id": "///J/19/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 305, "atom1_serNum": 2132, "atom2_serNum": 2206, "donAcc_type": "acceptable", "distance": 3.082, "atom1_id": "///2/101/O2'", "atom2_id": "///2/104/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 306, "atom1_serNum": 2137, "atom2_serNum": 7060, "donAcc_type": "acceptable", "distance": 3.565, "atom1_id": "///2/101/N3", "atom2_id": "///2/409/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 307, "atom1_serNum": 2144, "atom2_serNum": 7045, "donAcc_type": "standard", "distance": 2.999, "atom1_id": "///2/102/OP2", "atom2_id": "///2/408/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 308, "atom1_serNum": 2150, "atom2_serNum": 5945, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///2/102/O3'", "atom2_id": "///2/356/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 309, "atom1_serNum": 2156, "atom2_serNum": 7000, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///2/102/N7", "atom2_id": "///2/406/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 310, "atom1_serNum": 2165, "atom2_serNum": 50254, "donAcc_type": "standard", "distance": 3.212, "atom1_id": "///2/103/OP1", "atom2_id": "///J/12/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 311, "atom1_serNum": 2165, "atom2_serNum": 50255, "donAcc_type": "standard", "distance": 3.363, "atom1_id": "///2/103/OP1", "atom2_id": "///J/12/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 312, "atom1_serNum": 2167, "atom2_serNum": 5945, "donAcc_type": "standard", "distance": 2.533, "atom1_id": "///2/103/O5'", "atom2_id": "///2/356/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 313, "atom1_serNum": 2181, "atom2_serNum": 5931, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///2/103/N6", "atom2_id": "///2/356/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 314, "atom1_serNum": 2189, "atom2_serNum": 50298, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///2/104/O5'", "atom2_id": "///J/18/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 315, "atom1_serNum": 2200, "atom2_serNum": 5945, "donAcc_type": "standard", "distance": 3.465, "atom1_id": "///2/104/N7", "atom2_id": "///2/356/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 316, "atom1_serNum": 2218, "atom2_serNum": 7542, "donAcc_type": "acceptable", "distance": 3.550, "atom1_id": "///2/105/O2'", "atom2_id": "///2/431/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 317, "atom1_serNum": 2222, "atom2_serNum": 7076, "donAcc_type": "questionable", "distance": 3.190, "atom1_id": "///2/105/O2", "atom2_id": "///2/410/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 318, "atom1_serNum": 2229, "atom2_serNum": 7532, "donAcc_type": "acceptable", "distance": 2.544, "atom1_id": "///2/106/OP1", "atom2_id": "///2/431/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 319, "atom1_serNum": 2242, "atom2_serNum": 5925, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///2/106/O2", "atom2_id": "///2/355/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 320, "atom1_serNum": 2243, "atom2_serNum": 5923, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/106/N3", "atom2_id": "///2/355/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 321, "atom1_serNum": 2245, "atom2_serNum": 5922, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///2/106/N4", "atom2_id": "///2/355/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 322, "atom1_serNum": 2265, "atom2_serNum": 5902, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///2/107/N6", "atom2_id": "///2/354/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 323, "atom1_serNum": 2266, "atom2_serNum": 5900, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///2/107/N1", "atom2_id": "///2/354/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 324, "atom1_serNum": 2278, "atom2_serNum": 14114, "donAcc_type": "acceptable", "distance": 3.039, "atom1_id": "///2/108/O3'", "atom2_id": "///2/810/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 325, "atom1_serNum": 2280, "atom2_serNum": 14936, "donAcc_type": "acceptable", "distance": 2.837, "atom1_id": "///2/108/O2'", "atom2_id": "///2/854/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 326, "atom1_serNum": 2287, "atom2_serNum": 5882, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///2/108/O6", "atom2_id": "///2/353/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 327, "atom1_serNum": 2288, "atom2_serNum": 5880, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/108/N1", "atom2_id": "///2/353/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 328, "atom1_serNum": 2290, "atom2_serNum": 5879, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///2/108/N2", "atom2_id": "///2/353/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 329, "atom1_serNum": 2290, "atom2_serNum": 14938, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///2/108/N2", "atom2_id": "///2/854/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 330, "atom1_serNum": 2294, "atom2_serNum": 14092, "donAcc_type": "acceptable", "distance": 3.539, "atom1_id": "///2/109/OP1", "atom2_id": "///2/809/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 331, "atom1_serNum": 2294, "atom2_serNum": 14114, "donAcc_type": "acceptable", "distance": 2.732, "atom1_id": "///2/109/OP1", "atom2_id": "///2/810/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 332, "atom1_serNum": 2303, "atom2_serNum": 14950, "donAcc_type": "acceptable", "distance": 3.542, "atom1_id": "///2/109/O2'", "atom2_id": "///2/855/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 333, "atom1_serNum": 2307, "atom2_serNum": 5860, "donAcc_type": "standard", "distance": 3.951, "atom1_id": "///2/109/O2", "atom2_id": "///2/352/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 334, "atom1_serNum": 2307, "atom2_serNum": 54740, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///2/109/O2", "atom2_id": "///M/71/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 335, "atom1_serNum": 2308, "atom2_serNum": 5862, "donAcc_type": "standard", "distance": 3.409, "atom1_id": "///2/109/N3", "atom2_id": "///2/352/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 336, "atom1_serNum": 2314, "atom2_serNum": 44906, "donAcc_type": "standard", "distance": 3.463, "atom1_id": "///2/110/OP1", "atom2_id": "///F/221/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 337, "atom1_serNum": 2327, "atom2_serNum": 5840, "donAcc_type": "standard", "distance": 2.797, "atom1_id": "///2/110/O2", "atom2_id": "///2/351/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 338, "atom1_serNum": 2327, "atom2_serNum": 5842, "donAcc_type": "standard", "distance": 2.834, "atom1_id": "///2/110/O2", "atom2_id": "///2/351/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 339, "atom1_serNum": 2328, "atom2_serNum": 5839, "donAcc_type": "standard", "distance": 3.386, "atom1_id": "///2/110/N3", "atom2_id": "///2/351/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 340, "atom1_serNum": 2343, "atom2_serNum": 2361, "donAcc_type": "acceptable", "distance": 2.687, "atom1_id": "///2/111/O2'", "atom2_id": "///2/112/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 341, "atom1_serNum": 2351, "atom2_serNum": 5819, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///2/111/N1", "atom2_id": "///2/350/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 342, "atom1_serNum": 2365, "atom2_serNum": 2408, "donAcc_type": "acceptable", "distance": 2.629, "atom1_id": "///2/112/O2'", "atom2_id": "///2/114/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 343, "atom1_serNum": 2370, "atom2_serNum": 5798, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///2/112/N3", "atom2_id": "///2/349/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 344, "atom1_serNum": 2372, "atom2_serNum": 5797, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///2/112/O4", "atom2_id": "///2/349/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 345, "atom1_serNum": 2385, "atom2_serNum": 54722, "donAcc_type": "acceptable", "distance": 3.884, "atom1_id": "///2/113/O2'", "atom2_id": "///M/69/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 346, "atom1_serNum": 2393, "atom2_serNum": 4647, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///2/113/N1", "atom2_id": "///2/290/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 347, "atom1_serNum": 2393, "atom2_serNum": 4690, "donAcc_type": "standard", "distance": 2.545, "atom1_id": "///2/113/N1", "atom2_id": "///2/292/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 348, "atom1_serNum": 2395, "atom2_serNum": 4704, "donAcc_type": "standard", "distance": 2.835, "atom1_id": "///2/113/N2", "atom2_id": "///2/293/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 349, "atom1_serNum": 2406, "atom2_serNum": 6483, "donAcc_type": "acceptable", "distance": 2.814, "atom1_id": "///2/114/O3'", "atom2_id": "///2/382/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 350, "atom1_serNum": 2408, "atom2_serNum": 2423, "donAcc_type": "acceptable", "distance": 3.067, "atom1_id": "///2/114/O2'", "atom2_id": "///2/115/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 351, "atom1_serNum": 2412, "atom2_serNum": 54725, "donAcc_type": "standard", "distance": 3.370, "atom1_id": "///2/114/N7", "atom2_id": "///M/69/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 352, "atom1_serNum": 2416, "atom2_serNum": 5816, "donAcc_type": "standard", "distance": 3.177, "atom1_id": "///2/114/N1", "atom2_id": "///2/350/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 353, "atom1_serNum": 2424, "atom2_serNum": 6483, "donAcc_type": "acceptable", "distance": 2.604, "atom1_id": "///2/115/O5'", "atom2_id": "///2/382/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 354, "atom1_serNum": 2431, "atom2_serNum": 2447, "donAcc_type": "acceptable", "distance": 3.155, "atom1_id": "///2/115/O2'", "atom2_id": "///2/116/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 355, "atom1_serNum": 2431, "atom2_serNum": 6463, "donAcc_type": "acceptable", "distance": 3.178, "atom1_id": "///2/115/O2'", "atom2_id": "///2/381/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 356, "atom1_serNum": 2431, "atom2_serNum": 6467, "donAcc_type": "acceptable", "distance": 2.287, "atom1_id": "///2/115/O2'", "atom2_id": "///2/381/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 357, "atom1_serNum": 2436, "atom2_serNum": 5776, "donAcc_type": "standard", "distance": 3.591, "atom1_id": "///2/115/N3", "atom2_id": "///2/348/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 358, "atom1_serNum": 2455, "atom2_serNum": 5753, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///2/116/O2", "atom2_id": "///2/347/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 359, "atom1_serNum": 2455, "atom2_serNum": 5755, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///2/116/O2", "atom2_id": "///2/347/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 360, "atom1_serNum": 2456, "atom2_serNum": 5752, "donAcc_type": "standard", "distance": 2.528, "atom1_id": "///2/116/N3", "atom2_id": "///2/347/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 361, "atom1_serNum": 2475, "atom2_serNum": 5732, "donAcc_type": "standard", "distance": 2.391, "atom1_id": "///2/117/O2", "atom2_id": "///2/346/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 362, "atom1_serNum": 2515, "atom2_serNum": 43407, "donAcc_type": "acceptable", "distance": 2.366, "atom1_id": "///2/119/O2", "atom2_id": "///F/33/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 363, "atom1_serNum": 2518, "atom2_serNum": 5710, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///2/119/O4", "atom2_id": "///2/345/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 364, "atom1_serNum": 2527, "atom2_serNum": 43407, "donAcc_type": "acceptable", "distance": 3.470, "atom1_id": "///2/120/O4'", "atom2_id": "///F/33/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 365, "atom1_serNum": 2531, "atom2_serNum": 43405, "donAcc_type": "acceptable", "distance": 3.365, "atom1_id": "///2/120/O2'", "atom2_id": "///F/33/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 366, "atom1_serNum": 2536, "atom2_serNum": 5689, "donAcc_type": "standard", "distance": 3.702, "atom1_id": "///2/120/N3", "atom2_id": "///2/344/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 367, "atom1_serNum": 2538, "atom2_serNum": 5690, "donAcc_type": "standard", "distance": 3.406, "atom1_id": "///2/120/O4", "atom2_id": "///2/344/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 368, "atom1_serNum": 2549, "atom2_serNum": 43772, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///2/121/O3'", "atom2_id": "///F/77/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 369, "atom1_serNum": 2556, "atom2_serNum": 5671, "donAcc_type": "standard", "distance": 2.832, "atom1_id": "///2/121/N3", "atom2_id": "///2/343/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 370, "atom1_serNum": 2558, "atom2_serNum": 5670, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///2/121/O4", "atom2_id": "///2/343/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 371, "atom1_serNum": 2562, "atom2_serNum": 43754, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///2/122/OP1", "atom2_id": "///F/75/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 372, "atom1_serNum": 2562, "atom2_serNum": 43772, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///2/122/OP1", "atom2_id": "///F/77/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 373, "atom1_serNum": 2571, "atom2_serNum": 2590, "donAcc_type": "acceptable", "distance": 3.248, "atom1_id": "///2/122/O2'", "atom2_id": "///2/123/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 374, "atom1_serNum": 2571, "atom2_serNum": 44324, "donAcc_type": "acceptable", "distance": 3.077, "atom1_id": "///2/122/O2'", "atom2_id": "///F/146/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 375, "atom1_serNum": 2578, "atom2_serNum": 5650, "donAcc_type": "standard", "distance": 3.700, "atom1_id": "///2/122/O6", "atom2_id": "///2/342/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 376, "atom1_serNum": 2579, "atom2_serNum": 5648, "donAcc_type": "standard", "distance": 3.187, "atom1_id": "///2/122/N1", "atom2_id": "///2/342/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 377, "atom1_serNum": 2581, "atom2_serNum": 5647, "donAcc_type": "standard", "distance": 2.605, "atom1_id": "///2/122/N2", "atom2_id": "///2/342/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 378, "atom1_serNum": 2581, "atom2_serNum": 5648, "donAcc_type": "standard", "distance": 3.086, "atom1_id": "///2/122/N2", "atom2_id": "///2/342/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 379, "atom1_serNum": 2594, "atom2_serNum": 44345, "donAcc_type": "acceptable", "distance": 3.766, "atom1_id": "///2/123/O2'", "atom2_id": "///F/148/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 380, "atom1_serNum": 2601, "atom2_serNum": 5630, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/123/O6", "atom2_id": "///2/341/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 381, "atom1_serNum": 2602, "atom2_serNum": 5628, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///2/123/N1", "atom2_id": "///2/341/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 382, "atom1_serNum": 2604, "atom2_serNum": 5627, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///2/123/N2", "atom2_id": "///2/341/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 383, "atom1_serNum": 2608, "atom2_serNum": 48365, "donAcc_type": "standard", "distance": 2.285, "atom1_id": "///2/124/OP1", "atom2_id": "///H/201/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 384, "atom1_serNum": 2615, "atom2_serNum": 2687, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///2/124/O3'", "atom2_id": "///2/127/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 385, "atom1_serNum": 2621, "atom2_serNum": 5610, "donAcc_type": "standard", "distance": 3.584, "atom1_id": "///2/124/O2", "atom2_id": "///2/340/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 386, "atom1_serNum": 2628, "atom2_serNum": 2687, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///2/125/OP1", "atom2_id": "///2/127/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 387, "atom1_serNum": 2628, "atom2_serNum": 48373, "donAcc_type": "standard", "distance": 3.197, "atom1_id": "///2/125/OP1", "atom2_id": "///H/202/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 388, "atom1_serNum": 2649, "atom2_serNum": 48311, "donAcc_type": "standard", "distance": 2.258, "atom1_id": "///2/126/OP2", "atom2_id": "///H/195/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 389, "atom1_serNum": 2657, "atom2_serNum": 3614, "donAcc_type": "acceptable", "distance": 3.160, "atom1_id": "///2/126/O2'", "atom2_id": "///2/181/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 390, "atom1_serNum": 2664, "atom2_serNum": 48320, "donAcc_type": "standard", "distance": 3.821, "atom1_id": "///2/126/O6", "atom2_id": "///H/196/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 391, "atom1_serNum": 2667, "atom2_serNum": 3591, "donAcc_type": "acceptable", "distance": 2.923, "atom1_id": "///2/126/N2", "atom2_id": "///2/180/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 392, "atom1_serNum": 2667, "atom2_serNum": 3602, "donAcc_type": "standard", "distance": 2.553, "atom1_id": "///2/126/N2", "atom2_id": "///2/180/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 393, "atom1_serNum": 2668, "atom2_serNum": 3601, "donAcc_type": "standard", "distance": 3.210, "atom1_id": "///2/126/N3", "atom2_id": "///2/180/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 394, "atom1_serNum": 2672, "atom2_serNum": 2707, "donAcc_type": "questionable", "distance": 3.271, "atom1_id": "///2/127/OP2", "atom2_id": "///2/128/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 395, "atom1_serNum": 2684, "atom2_serNum": 44235, "donAcc_type": "standard", "distance": 2.453, "atom1_id": "///2/127/O2", "atom2_id": "///F/134/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 396, "atom1_serNum": 2692, "atom2_serNum": 2727, "donAcc_type": "standard", "distance": 3.129, "atom1_id": "///2/128/OP2", "atom2_id": "///2/129/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 397, "atom1_serNum": 2700, "atom2_serNum": 2747, "donAcc_type": "acceptable", "distance": 3.129, "atom1_id": "///2/128/O2'", "atom2_id": "///2/130/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 398, "atom1_serNum": 2705, "atom2_serNum": 5092, "donAcc_type": "standard", "distance": 2.611, "atom1_id": "///2/128/N3", "atom2_id": "///2/311/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 399, "atom1_serNum": 2707, "atom2_serNum": 5088, "donAcc_type": "acceptable", "distance": 3.280, "atom1_id": "///2/128/O4", "atom2_id": "///2/311/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 400, "atom1_serNum": 2711, "atom2_serNum": 4318, "donAcc_type": "questionable", "distance": 3.169, "atom1_id": "///2/129/OP1", "atom2_id": "///2/214/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 401, "atom1_serNum": 2712, "atom2_serNum": 4325, "donAcc_type": "acceptable", "distance": 3.178, "atom1_id": "///2/129/OP2", "atom2_id": "///2/214/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 402, "atom1_serNum": 2720, "atom2_serNum": 2724, "donAcc_type": "acceptable", "distance": 2.644, "atom1_id": "///2/129/O2'", "atom2_id": "///2/129/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 403, "atom1_serNum": 2720, "atom2_serNum": 3686, "donAcc_type": "acceptable", "distance": 3.482, "atom1_id": "///2/129/O2'", "atom2_id": "///2/184/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 404, "atom1_serNum": 2724, "atom2_serNum": 3666, "donAcc_type": "standard", "distance": 2.693, "atom1_id": "///2/129/O2", "atom2_id": "///2/183/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 405, "atom1_serNum": 2725, "atom2_serNum": 3664, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///2/129/N3", "atom2_id": "///2/183/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 406, "atom1_serNum": 2727, "atom2_serNum": 3663, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///2/129/N4", "atom2_id": "///2/183/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 407, "atom1_serNum": 2747, "atom2_serNum": 3643, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///2/130/O6", "atom2_id": "///2/182/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 408, "atom1_serNum": 2748, "atom2_serNum": 3641, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/130/N1", "atom2_id": "///2/182/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 409, "atom1_serNum": 2750, "atom2_serNum": 3640, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///2/130/N2", "atom2_id": "///2/182/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 410, "atom1_serNum": 2763, "atom2_serNum": 3555, "donAcc_type": "acceptable", "distance": 3.141, "atom1_id": "///2/141/O2'", "atom2_id": "///2/178/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 411, "atom1_serNum": 2770, "atom2_serNum": 3528, "donAcc_type": "acceptable", "distance": 2.928, "atom1_id": "///2/141/N6", "atom2_id": "///2/177/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 412, "atom1_serNum": 2770, "atom2_serNum": 3539, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///2/141/N6", "atom2_id": "///2/177/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 413, "atom1_serNum": 2771, "atom2_serNum": 3538, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///2/141/N1", "atom2_id": "///2/177/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 414, "atom1_serNum": 2785, "atom2_serNum": 2797, "donAcc_type": "acceptable", "distance": 3.195, "atom1_id": "///2/142/O2'", "atom2_id": "///2/143/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 415, "atom1_serNum": 2810, "atom2_serNum": 5144, "donAcc_type": "standard", "distance": 3.685, "atom1_id": "///2/143/N3", "atom2_id": "///2/314/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 416, "atom1_serNum": 2817, "atom2_serNum": 47832, "donAcc_type": "acceptable", "distance": 3.133, "atom1_id": "///2/144/OP2", "atom2_id": "///H/139/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 417, "atom1_serNum": 2830, "atom2_serNum": 3494, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///2/144/N3", "atom2_id": "///2/175/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 418, "atom1_serNum": 2832, "atom2_serNum": 3493, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///2/144/O4", "atom2_id": "///2/175/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 419, "atom1_serNum": 2837, "atom2_serNum": 47832, "donAcc_type": "acceptable", "distance": 2.885, "atom1_id": "///2/145/OP2", "atom2_id": "///H/139/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 420, "atom1_serNum": 2845, "atom2_serNum": 2864, "donAcc_type": "acceptable", "distance": 2.907, "atom1_id": "///2/145/O2'", "atom2_id": "///2/146/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 421, "atom1_serNum": 2849, "atom2_serNum": 48165, "donAcc_type": "standard", "distance": 3.690, "atom1_id": "///2/145/N7", "atom2_id": "///H/178/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 422, "atom1_serNum": 2852, "atom2_serNum": 3473, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///2/145/O6", "atom2_id": "///2/174/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 423, "atom1_serNum": 2853, "atom2_serNum": 3471, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/145/N1", "atom2_id": "///2/174/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 424, "atom1_serNum": 2855, "atom2_serNum": 3470, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///2/145/N2", "atom2_id": "///2/174/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 425, "atom1_serNum": 2859, "atom2_serNum": 47871, "donAcc_type": "standard", "distance": 3.583, "atom1_id": "///2/146/OP1", "atom2_id": "///H/143/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 426, "atom1_serNum": 2860, "atom2_serNum": 47842, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///2/146/OP2", "atom2_id": "///H/140/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 427, "atom1_serNum": 2868, "atom2_serNum": 2883, "donAcc_type": "acceptable", "distance": 3.031, "atom1_id": "///2/146/O2'", "atom2_id": "///2/147/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 428, "atom1_serNum": 2868, "atom2_serNum": 2884, "donAcc_type": "acceptable", "distance": 2.750, "atom1_id": "///2/146/O2'", "atom2_id": "///2/147/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 429, "atom1_serNum": 2868, "atom2_serNum": 2887, "donAcc_type": "acceptable", "distance": 3.153, "atom1_id": "///2/146/O2'", "atom2_id": "///2/147/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 430, "atom1_serNum": 2875, "atom2_serNum": 3451, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///2/146/O6", "atom2_id": "///2/173/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 431, "atom1_serNum": 2875, "atom2_serNum": 47821, "donAcc_type": "standard", "distance": 3.747, "atom1_id": "///2/146/O6", "atom2_id": "///H/137/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 432, "atom1_serNum": 2876, "atom2_serNum": 3452, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///2/146/N1", "atom2_id": "///2/173/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 433, "atom1_serNum": 2898, "atom2_serNum": 3394, "donAcc_type": "standard", "distance": 3.596, "atom1_id": "///2/147/N6", "atom2_id": "///2/171/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 434, "atom1_serNum": 2913, "atom2_serNum": 2929, "donAcc_type": "acceptable", "distance": 2.623, "atom1_id": "///2/148/O2'", "atom2_id": "///2/149/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 435, "atom1_serNum": 2917, "atom2_serNum": 3387, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///2/148/O2", "atom2_id": "///2/170/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 436, "atom1_serNum": 2917, "atom2_serNum": 3409, "donAcc_type": "standard", "distance": 3.607, "atom1_id": "///2/148/O2", "atom2_id": "///2/171/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 437, "atom1_serNum": 2918, "atom2_serNum": 3384, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///2/148/N3", "atom2_id": "///2/170/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 438, "atom1_serNum": 2937, "atom2_serNum": 3365, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///2/149/N7", "atom2_id": "///2/169/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 439, "atom1_serNum": 2940, "atom2_serNum": 3364, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///2/149/N6", "atom2_id": "///2/169/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 440, "atom1_serNum": 2946, "atom2_serNum": 68509, "donAcc_type": "standard", "distance": 3.424, "atom1_id": "///2/150/OP1", "atom2_id": "///Z/118/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 441, "atom1_serNum": 2947, "atom2_serNum": 2984, "donAcc_type": "standard", "distance": 3.844, "atom1_id": "///2/150/OP2", "atom2_id": "///2/151/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 442, "atom1_serNum": 2962, "atom2_serNum": 3345, "donAcc_type": "standard", "distance": 2.694, "atom1_id": "///2/150/N6", "atom2_id": "///2/168/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 443, "atom1_serNum": 2968, "atom2_serNum": 68515, "donAcc_type": "standard", "distance": 3.202, "atom1_id": "///2/151/OP1", "atom2_id": "///Z/120/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 444, "atom1_serNum": 2968, "atom2_serNum": 68520, "donAcc_type": "acceptable", "distance": 2.161, "atom1_id": "///2/151/OP1", "atom2_id": "///Z/120/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 445, "atom1_serNum": 2981, "atom2_serNum": 3327, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///2/151/O2", "atom2_id": "///2/167/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 446, "atom1_serNum": 2982, "atom2_serNum": 3325, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/151/N3", "atom2_id": "///2/167/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 447, "atom1_serNum": 2984, "atom2_serNum": 3324, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/151/N4", "atom2_id": "///2/167/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 448, "atom1_serNum": 3002, "atom2_serNum": 3303, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/152/N3", "atom2_id": "///2/166/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 449, "atom1_serNum": 3004, "atom2_serNum": 3302, "donAcc_type": "standard", "distance": 3.006, "atom1_id": "///2/152/O4", "atom2_id": "///2/166/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 450, "atom1_serNum": 3027, "atom2_serNum": 46837, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///2/153/N2", "atom2_id": "///H/13/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 451, "atom1_serNum": 3040, "atom2_serNum": 46774, "donAcc_type": "acceptable", "distance": 2.912, "atom1_id": "///2/154/O2'", "atom2_id": "///H/4/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 452, "atom1_serNum": 3044, "atom2_serNum": 46775, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///2/154/O2", "atom2_id": "///H/4/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 453, "atom1_serNum": 3045, "atom2_serNum": 3279, "donAcc_type": "standard", "distance": 3.825, "atom1_id": "///2/154/N3", "atom2_id": "///2/165/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 454, "atom1_serNum": 3047, "atom2_serNum": 3257, "donAcc_type": "standard", "distance": 3.577, "atom1_id": "///2/154/O4", "atom2_id": "///2/164/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 455, "atom1_serNum": 3060, "atom2_serNum": 3076, "donAcc_type": "acceptable", "distance": 2.807, "atom1_id": "///2/155/O2'", "atom2_id": "///2/156/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 456, "atom1_serNum": 3067, "atom2_serNum": 3235, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///2/155/O6", "atom2_id": "///2/163/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 457, "atom1_serNum": 3068, "atom2_serNum": 3234, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///2/155/N1", "atom2_id": "///2/163/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 458, "atom1_serNum": 3070, "atom2_serNum": 47184, "donAcc_type": "standard", "distance": 2.670, "atom1_id": "///2/155/N2", "atom2_id": "///H/56/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 459, "atom1_serNum": 3074, "atom2_serNum": 46759, "donAcc_type": "standard", "distance": 2.322, "atom1_id": "///2/156/OP1", "atom2_id": "///H/2/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 460, "atom1_serNum": 3083, "atom2_serNum": 3102, "donAcc_type": "acceptable", "distance": 2.225, "atom1_id": "///2/156/O2'", "atom2_id": "///2/157/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 461, "atom1_serNum": 3090, "atom2_serNum": 3217, "donAcc_type": "standard", "distance": 3.781, "atom1_id": "///2/156/O6", "atom2_id": "///2/162/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 462, "atom1_serNum": 3091, "atom2_serNum": 3234, "donAcc_type": "standard", "distance": 3.237, "atom1_id": "///2/156/N1", "atom2_id": "///2/163/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 463, "atom1_serNum": 3093, "atom2_serNum": 3215, "donAcc_type": "standard", "distance": 3.902, "atom1_id": "///2/156/N2", "atom2_id": "///2/162/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 464, "atom1_serNum": 3106, "atom2_serNum": 3130, "donAcc_type": "acceptable", "distance": 2.338, "atom1_id": "///2/157/O2'", "atom2_id": "///2/158/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 465, "atom1_serNum": 3110, "atom2_serNum": 47206, "donAcc_type": "questionable", "distance": 3.271, "atom1_id": "///2/157/O2", "atom2_id": "///H/59/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 466, "atom1_serNum": 3126, "atom2_serNum": 3144, "donAcc_type": "acceptable", "distance": 2.487, "atom1_id": "///2/158/O2'", "atom2_id": "///2/159/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 467, "atom1_serNum": 3133, "atom2_serNum": 8293, "donAcc_type": "standard", "distance": 2.451, "atom1_id": "///2/158/N6", "atom2_id": "///2/466/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 468, "atom1_serNum": 3136, "atom2_serNum": 8225, "donAcc_type": "acceptable", "distance": 3.260, "atom1_id": "///2/158/N3", "atom2_id": "///2/463/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 469, "atom1_serNum": 3170, "atom2_serNum": 3203, "donAcc_type": "acceptable", "distance": 2.784, "atom1_id": "///2/160/O2'", "atom2_id": "///2/162/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 470, "atom1_serNum": 3174, "atom2_serNum": 8348, "donAcc_type": "questionable", "distance": 3.236, "atom1_id": "///2/160/O2", "atom2_id": "///2/469/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 471, "atom1_serNum": 3182, "atom2_serNum": 68492, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///2/161/OP2", "atom2_id": "///Z/116/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 472, "atom1_serNum": 3186, "atom2_serNum": 68487, "donAcc_type": "questionable", "distance": 2.991, "atom1_id": "///2/161/O4'", "atom2_id": "///Z/116/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 473, "atom1_serNum": 3190, "atom2_serNum": 47433, "donAcc_type": "acceptable", "distance": 2.617, "atom1_id": "///2/161/O2'", "atom2_id": "///H/87/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 474, "atom1_serNum": 3190, "atom2_serNum": 47434, "donAcc_type": "acceptable", "distance": 3.004, "atom1_id": "///2/161/O2'", "atom2_id": "///H/87/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 475, "atom1_serNum": 3210, "atom2_serNum": 47505, "donAcc_type": "acceptable", "distance": 2.410, "atom1_id": "///2/162/O2'", "atom2_id": "///H/95/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 476, "atom1_serNum": 3221, "atom2_serNum": 47391, "donAcc_type": "questionable", "distance": 2.833, "atom1_id": "///2/163/OP1", "atom2_id": "///H/83/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 477, "atom1_serNum": 3222, "atom2_serNum": 47406, "donAcc_type": "standard", "distance": 3.794, "atom1_id": "///2/163/OP2", "atom2_id": "///H/85/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 478, "atom1_serNum": 3241, "atom2_serNum": 47388, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///2/164/OP1", "atom2_id": "///H/83/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 479, "atom1_serNum": 3250, "atom2_serNum": 3268, "donAcc_type": "acceptable", "distance": 2.358, "atom1_id": "///2/164/O2'", "atom2_id": "///2/165/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 480, "atom1_serNum": 3264, "atom2_serNum": 3282, "donAcc_type": "standard", "distance": 2.666, "atom1_id": "///2/165/OP2", "atom2_id": "///2/165/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 481, "atom1_serNum": 3272, "atom2_serNum": 47169, "donAcc_type": "acceptable", "distance": 2.362, "atom1_id": "///2/165/O2'", "atom2_id": "///H/53/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 482, "atom1_serNum": 3317, "atom2_serNum": 3331, "donAcc_type": "acceptable", "distance": 2.839, "atom1_id": "///2/167/O2'", "atom2_id": "///2/168/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 483, "atom1_serNum": 3340, "atom2_serNum": 47771, "donAcc_type": "acceptable", "distance": 2.654, "atom1_id": "///2/168/O2'", "atom2_id": "///H/131/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 484, "atom1_serNum": 3340, "atom2_serNum": 47786, "donAcc_type": "acceptable", "distance": 2.349, "atom1_id": "///2/168/O2'", "atom2_id": "///H/133/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 485, "atom1_serNum": 3344, "atom2_serNum": 47783, "donAcc_type": "standard", "distance": 3.282, "atom1_id": "///2/168/O2", "atom2_id": "///H/133/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 486, "atom1_serNum": 3358, "atom2_serNum": 47802, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///2/169/O3'", "atom2_id": "///H/136/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 487, "atom1_serNum": 3360, "atom2_serNum": 47794, "donAcc_type": "acceptable", "distance": 3.139, "atom1_id": "///2/169/O2'", "atom2_id": "///H/134/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 488, "atom1_serNum": 3371, "atom2_serNum": 47802, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///2/170/OP1", "atom2_id": "///H/136/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 489, "atom1_serNum": 3371, "atom2_serNum": 47811, "donAcc_type": "standard", "distance": 2.378, "atom1_id": "///2/170/OP1", "atom2_id": "///H/137/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 490, "atom1_serNum": 3372, "atom2_serNum": 47840, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///2/170/OP2", "atom2_id": "///H/140/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 491, "atom1_serNum": 3380, "atom2_serNum": 3398, "donAcc_type": "acceptable", "distance": 3.197, "atom1_id": "///2/170/O2'", "atom2_id": "///2/171/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 492, "atom1_serNum": 3393, "atom2_serNum": 47818, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///2/171/OP1", "atom2_id": "///H/137/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 493, "atom1_serNum": 3393, "atom2_serNum": 47821, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///2/171/OP1", "atom2_id": "///H/137/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 494, "atom1_serNum": 3393, "atom2_serNum": 48164, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///2/171/OP1", "atom2_id": "///H/178/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 495, "atom1_serNum": 3394, "atom2_serNum": 47821, "donAcc_type": "standard", "distance": 3.358, "atom1_id": "///2/171/OP2", "atom2_id": "///H/137/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 496, "atom1_serNum": 3402, "atom2_serNum": 3448, "donAcc_type": "acceptable", "distance": 3.162, "atom1_id": "///2/171/O2'", "atom2_id": "///2/173/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 497, "atom1_serNum": 3415, "atom2_serNum": 5153, "donAcc_type": "acceptable", "distance": 2.337, "atom1_id": "///2/172/OP1", "atom2_id": "///2/314/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 498, "atom1_serNum": 3499, "atom2_serNum": 5029, "donAcc_type": "questionable", "distance": 2.943, "atom1_id": "///2/176/OP1", "atom2_id": "///2/308/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 499, "atom1_serNum": 3512, "atom2_serNum": 5138, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///2/176/O2", "atom2_id": "///2/313/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 500, "atom1_serNum": 3513, "atom2_serNum": 5135, "donAcc_type": "standard", "distance": 3.134, "atom1_id": "///2/176/N3", "atom2_id": "///2/313/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 501, "atom1_serNum": 3536, "atom2_serNum": 5122, "donAcc_type": "standard", "distance": 2.574, "atom1_id": "///2/177/N1", "atom2_id": "///2/313/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 502, "atom1_serNum": 3538, "atom2_serNum": 5123, "donAcc_type": "standard", "distance": 3.260, "atom1_id": "///2/177/N2", "atom2_id": "///2/313/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 503, "atom1_serNum": 3538, "atom2_serNum": 5124, "donAcc_type": "standard", "distance": 3.210, "atom1_id": "///2/177/N2", "atom2_id": "///2/313/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 504, "atom1_serNum": 3606, "atom2_serNum": 3636, "donAcc_type": "acceptable", "distance": 2.377, "atom1_id": "///2/181/OP2", "atom2_id": "///2/182/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 505, "atom1_serNum": 3656, "atom2_serNum": 3672, "donAcc_type": "acceptable", "distance": 2.252, "atom1_id": "///2/183/O2'", "atom2_id": "///2/184/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 506, "atom1_serNum": 3656, "atom2_serNum": 3675, "donAcc_type": "acceptable", "distance": 2.220, "atom1_id": "///2/183/O2'", "atom2_id": "///2/184/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 507, "atom1_serNum": 3709, "atom2_serNum": 4330, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///2/185/O6", "atom2_id": "///2/214/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 508, "atom1_serNum": 3710, "atom2_serNum": 4329, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///2/185/N1", "atom2_id": "///2/214/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 509, "atom1_serNum": 3712, "atom2_serNum": 4329, "donAcc_type": "standard", "distance": 3.343, "atom1_id": "///2/185/N2", "atom2_id": "///2/214/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 510, "atom1_serNum": 3729, "atom2_serNum": 4312, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///2/186/O2", "atom2_id": "///2/213/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 511, "atom1_serNum": 3730, "atom2_serNum": 4310, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/186/N3", "atom2_id": "///2/213/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 512, "atom1_serNum": 3732, "atom2_serNum": 4309, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///2/186/N4", "atom2_id": "///2/213/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 513, "atom1_serNum": 3752, "atom2_serNum": 4289, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///2/187/O6", "atom2_id": "///2/212/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 514, "atom1_serNum": 3753, "atom2_serNum": 4287, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/187/N1", "atom2_id": "///2/212/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 515, "atom1_serNum": 3755, "atom2_serNum": 4286, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///2/187/N2", "atom2_id": "///2/212/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 516, "atom1_serNum": 3772, "atom2_serNum": 4269, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///2/188/O2", "atom2_id": "///2/211/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 517, "atom1_serNum": 3773, "atom2_serNum": 4267, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///2/188/N3", "atom2_id": "///2/211/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 518, "atom1_serNum": 3775, "atom2_serNum": 4266, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///2/188/N4", "atom2_id": "///2/211/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 519, "atom1_serNum": 3779, "atom2_serNum": 51369, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///2/189/OP1", "atom2_id": "///J/148/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 520, "atom1_serNum": 3780, "atom2_serNum": 51369, "donAcc_type": "standard", "distance": 3.055, "atom1_id": "///2/189/OP2", "atom2_id": "///J/148/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 521, "atom1_serNum": 3786, "atom2_serNum": 51381, "donAcc_type": "acceptable", "distance": 3.557, "atom1_id": "///2/189/O3'", "atom2_id": "///J/149/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 522, "atom1_serNum": 3793, "atom2_serNum": 4246, "donAcc_type": "standard", "distance": 3.699, "atom1_id": "///2/189/N3", "atom2_id": "///2/210/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 523, "atom1_serNum": 3799, "atom2_serNum": 51381, "donAcc_type": "acceptable", "distance": 3.429, "atom1_id": "///2/190/OP1", "atom2_id": "///J/149/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 524, "atom1_serNum": 3806, "atom2_serNum": 4204, "donAcc_type": "standard", "distance": 3.401, "atom1_id": "///2/190/O3'", "atom2_id": "///2/208/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 525, "atom1_serNum": 3808, "atom2_serNum": 4224, "donAcc_type": "acceptable", "distance": 2.237, "atom1_id": "///2/190/O2'", "atom2_id": "///2/209/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 526, "atom1_serNum": 3818, "atom2_serNum": 4209, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///2/190/N2", "atom2_id": "///2/209/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 527, "atom1_serNum": 3822, "atom2_serNum": 51316, "donAcc_type": "acceptable", "distance": 3.071, "atom1_id": "///2/191/OP1", "atom2_id": "///J/142/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 528, "atom1_serNum": 3823, "atom2_serNum": 4204, "donAcc_type": "standard", "distance": 2.274, "atom1_id": "///2/191/OP2", "atom2_id": "///2/208/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 529, "atom1_serNum": 3835, "atom2_serNum": 4204, "donAcc_type": "standard", "distance": 3.947, "atom1_id": "///2/191/N7", "atom2_id": "///2/208/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 530, "atom1_serNum": 3838, "atom2_serNum": 4194, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///2/191/N6", "atom2_id": "///2/208/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 531, "atom1_serNum": 3853, "atom2_serNum": 3864, "donAcc_type": "acceptable", "distance": 2.947, "atom1_id": "///2/192/O2'", "atom2_id": "///2/193/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 532, "atom1_serNum": 3858, "atom2_serNum": 4179, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///2/192/N3", "atom2_id": "///2/207/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 533, "atom1_serNum": 3860, "atom2_serNum": 4178, "donAcc_type": "standard", "distance": 2.514, "atom1_id": "///2/192/N4", "atom2_id": "///2/207/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 534, "atom1_serNum": 3877, "atom2_serNum": 4158, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///2/193/O2", "atom2_id": "///2/206/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 535, "atom1_serNum": 3878, "atom2_serNum": 4156, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///2/193/N3", "atom2_id": "///2/206/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 536, "atom1_serNum": 3880, "atom2_serNum": 4155, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/193/N4", "atom2_id": "///2/206/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 537, "atom1_serNum": 3897, "atom2_serNum": 4135, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///2/194/O2", "atom2_id": "///2/205/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 538, "atom1_serNum": 3898, "atom2_serNum": 4133, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/194/N3", "atom2_id": "///2/205/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 539, "atom1_serNum": 3900, "atom2_serNum": 4132, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///2/194/N4", "atom2_id": "///2/205/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 540, "atom1_serNum": 3917, "atom2_serNum": 4112, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///2/195/O2", "atom2_id": "///2/204/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 541, "atom1_serNum": 3918, "atom2_serNum": 4110, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/195/N3", "atom2_id": "///2/204/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 542, "atom1_serNum": 3920, "atom2_serNum": 4109, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///2/195/N4", "atom2_id": "///2/204/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 543, "atom1_serNum": 3933, "atom2_serNum": 3946, "donAcc_type": "acceptable", "distance": 2.913, "atom1_id": "///2/196/O2'", "atom2_id": "///2/197/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 544, "atom1_serNum": 3937, "atom2_serNum": 4089, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///2/196/O2", "atom2_id": "///2/203/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 545, "atom1_serNum": 3938, "atom2_serNum": 4087, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///2/196/N3", "atom2_id": "///2/203/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 546, "atom1_serNum": 3940, "atom2_serNum": 4086, "donAcc_type": "standard", "distance": 3.010, "atom1_id": "///2/196/N4", "atom2_id": "///2/203/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 547, "atom1_serNum": 3960, "atom2_serNum": 4063, "donAcc_type": "questionable", "distance": 2.976, "atom1_id": "///2/197/O4", "atom2_id": "///2/202/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 548, "atom1_serNum": 3977, "atom2_serNum": 4043, "donAcc_type": "standard", "distance": 3.629, "atom1_id": "///2/198/O2", "atom2_id": "///2/201/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 549, "atom1_serNum": 3978, "atom2_serNum": 4028, "donAcc_type": "standard", "distance": 3.854, "atom1_id": "///2/198/N3", "atom2_id": "///2/201/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 550, "atom1_serNum": 3978, "atom2_serNum": 4063, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///2/198/N3", "atom2_id": "///2/202/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 551, "atom1_serNum": 4071, "atom2_serNum": 51325, "donAcc_type": "standard", "distance": 3.268, "atom1_id": "///2/203/OP2", "atom2_id": "///J/143/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 552, "atom1_serNum": 4094, "atom2_serNum": 51325, "donAcc_type": "standard", "distance": 3.565, "atom1_id": "///2/204/OP2", "atom2_id": "///J/143/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 553, "atom1_serNum": 4094, "atom2_serNum": 51360, "donAcc_type": "standard", "distance": 2.608, "atom1_id": "///2/204/OP2", "atom2_id": "///J/147/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 554, "atom1_serNum": 4372, "atom2_serNum": 5055, "donAcc_type": "standard", "distance": 3.273, "atom1_id": "///2/216/O2", "atom2_id": "///2/309/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 555, "atom1_serNum": 4373, "atom2_serNum": 5055, "donAcc_type": "standard", "distance": 3.395, "atom1_id": "///2/216/N3", "atom2_id": "///2/309/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 556, "atom1_serNum": 4395, "atom2_serNum": 4943, "donAcc_type": "standard", "distance": 3.315, "atom1_id": "///2/217/N6", "atom2_id": "///2/304/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 557, "atom1_serNum": 4396, "atom2_serNum": 4943, "donAcc_type": "questionable", "distance": 2.896, "atom1_id": "///2/217/N1", "atom2_id": "///2/304/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 558, "atom1_serNum": 4410, "atom2_serNum": 4426, "donAcc_type": "acceptable", "distance": 3.293, "atom1_id": "///2/218/O2'", "atom2_id": "///2/219/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 559, "atom1_serNum": 4414, "atom2_serNum": 51651, "donAcc_type": "standard", "distance": 2.422, "atom1_id": "///2/218/O2", "atom2_id": "///J/184/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 560, "atom1_serNum": 4415, "atom2_serNum": 4923, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///2/218/N3", "atom2_id": "///2/303/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 561, "atom1_serNum": 4417, "atom2_serNum": 4926, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///2/218/O4", "atom2_id": "///2/303/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 562, "atom1_serNum": 4430, "atom2_serNum": 4446, "donAcc_type": "acceptable", "distance": 3.043, "atom1_id": "///2/219/O2'", "atom2_id": "///2/220/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 563, "atom1_serNum": 4430, "atom2_serNum": 51600, "donAcc_type": "acceptable", "distance": 3.420, "atom1_id": "///2/219/O2'", "atom2_id": "///J/177/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 564, "atom1_serNum": 4430, "atom2_serNum": 51665, "donAcc_type": "acceptable", "distance": 2.365, "atom1_id": "///2/219/O2'", "atom2_id": "///J/186/OD2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 565, "atom1_serNum": 4435, "atom2_serNum": 4905, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/219/N3", "atom2_id": "///2/302/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 566, "atom1_serNum": 4435, "atom2_serNum": 4923, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/219/N3", "atom2_id": "///2/303/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 567, "atom1_serNum": 4437, "atom2_serNum": 4904, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///2/219/O4", "atom2_id": "///2/302/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 568, "atom1_serNum": 4455, "atom2_serNum": 4883, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///2/220/N3", "atom2_id": "///2/301/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 569, "atom1_serNum": 4457, "atom2_serNum": 4882, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///2/220/O4", "atom2_id": "///2/301/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 570, "atom1_serNum": 4457, "atom2_serNum": 4904, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///2/220/O4", "atom2_id": "///2/302/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 571, "atom1_serNum": 4470, "atom2_serNum": 50695, "donAcc_type": "acceptable", "distance": 3.124, "atom1_id": "///2/221/O2'", "atom2_id": "///J/66/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 572, "atom1_serNum": 4478, "atom2_serNum": 4860, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///2/221/N1", "atom2_id": "///2/300/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 573, "atom1_serNum": 4497, "atom2_serNum": 4841, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///2/222/N3", "atom2_id": "///2/299/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 574, "atom1_serNum": 4499, "atom2_serNum": 4840, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///2/222/O4", "atom2_id": "///2/299/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 575, "atom1_serNum": 4512, "atom2_serNum": 4528, "donAcc_type": "acceptable", "distance": 3.127, "atom1_id": "///2/223/O2'", "atom2_id": "///2/224/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 576, "atom1_serNum": 4516, "atom2_serNum": 4820, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///2/223/O2", "atom2_id": "///2/298/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 577, "atom1_serNum": 4517, "atom2_serNum": 4818, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/223/N3", "atom2_id": "///2/298/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 578, "atom1_serNum": 4519, "atom2_serNum": 4817, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///2/223/N4", "atom2_id": "///2/298/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 579, "atom1_serNum": 4540, "atom2_serNum": 4795, "donAcc_type": "standard", "distance": 3.574, "atom1_id": "///2/224/N1", "atom2_id": "///2/297/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 580, "atom1_serNum": 4540, "atom2_serNum": 4796, "donAcc_type": "questionable", "distance": 3.227, "atom1_id": "///2/224/N1", "atom2_id": "///2/297/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 581, "atom1_serNum": 4564, "atom2_serNum": 4775, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///2/225/N2", "atom2_id": "///2/296/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 582, "atom1_serNum": 4584, "atom2_serNum": 4773, "donAcc_type": "standard", "distance": 2.327, "atom1_id": "///2/287/O4", "atom2_id": "///2/296/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 583, "atom1_serNum": 4595, "atom2_serNum": 44405, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///2/288/O3'", "atom2_id": "///F/155/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 584, "atom1_serNum": 4597, "atom2_serNum": 4616, "donAcc_type": "acceptable", "distance": 3.224, "atom1_id": "///2/288/O2'", "atom2_id": "///2/289/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 585, "atom1_serNum": 4605, "atom2_serNum": 4753, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///2/288/N1", "atom2_id": "///2/295/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 586, "atom1_serNum": 4607, "atom2_serNum": 4752, "donAcc_type": "standard", "distance": 3.246, "atom1_id": "///2/288/N2", "atom2_id": "///2/295/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 587, "atom1_serNum": 4611, "atom2_serNum": 44405, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///2/289/OP1", "atom2_id": "///F/155/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 588, "atom1_serNum": 4620, "atom2_serNum": 4639, "donAcc_type": "acceptable", "distance": 2.751, "atom1_id": "///2/289/O2'", "atom2_id": "///2/290/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 589, "atom1_serNum": 4627, "atom2_serNum": 4755, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///2/289/O6", "atom2_id": "///2/295/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 590, "atom1_serNum": 4643, "atom2_serNum": 4667, "donAcc_type": "acceptable", "distance": 2.716, "atom1_id": "///2/290/O2'", "atom2_id": "///2/291/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 591, "atom1_serNum": 4648, "atom2_serNum": 4700, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///2/290/N3", "atom2_id": "///2/293/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 592, "atom1_serNum": 4663, "atom2_serNum": 4679, "donAcc_type": "acceptable", "distance": 2.948, "atom1_id": "///2/291/O2'", "atom2_id": "///2/292/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 593, "atom1_serNum": 4663, "atom2_serNum": 4682, "donAcc_type": "acceptable", "distance": 2.678, "atom1_id": "///2/291/O2'", "atom2_id": "///2/292/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 594, "atom1_serNum": 4686, "atom2_serNum": 54491, "donAcc_type": "acceptable", "distance": 2.209, "atom1_id": "///2/292/O2'", "atom2_id": "///M/39/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 595, "atom1_serNum": 4708, "atom2_serNum": 4741, "donAcc_type": "acceptable", "distance": 2.842, "atom1_id": "///2/293/O2'", "atom2_id": "///2/295/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 596, "atom1_serNum": 4719, "atom2_serNum": 54466, "donAcc_type": "acceptable", "distance": 2.582, "atom1_id": "///2/294/OP1", "atom2_id": "///M/36/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 597, "atom1_serNum": 4768, "atom2_serNum": 44212, "donAcc_type": "acceptable", "distance": 3.065, "atom1_id": "///2/296/O2'", "atom2_id": "///F/131/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 598, "atom1_serNum": 4801, "atom2_serNum": 44223, "donAcc_type": "questionable", "distance": 2.854, "atom1_id": "///2/298/OP1", "atom2_id": "///F/133/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 599, "atom1_serNum": 4875, "atom2_serNum": 50741, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///2/301/O2'", "atom2_id": "///J/73/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 600, "atom1_serNum": 4875, "atom2_serNum": 50744, "donAcc_type": "acceptable", "distance": 3.166, "atom1_id": "///2/301/O2'", "atom2_id": "///J/73/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 601, "atom1_serNum": 4885, "atom2_serNum": 50746, "donAcc_type": "acceptable", "distance": 2.943, "atom1_id": "///2/301/N3", "atom2_id": "///J/73/OG1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 602, "atom1_serNum": 4890, "atom2_serNum": 50757, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///2/302/O5'", "atom2_id": "///J/74/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 603, "atom1_serNum": 4893, "atom2_serNum": 50744, "donAcc_type": "questionable", "distance": 3.317, "atom1_id": "///2/302/O4'", "atom2_id": "///J/73/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 604, "atom1_serNum": 4907, "atom2_serNum": 50678, "donAcc_type": "standard", "distance": 3.341, "atom1_id": "///2/302/N3", "atom2_id": "///J/64/ND2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 605, "atom1_serNum": 4923, "atom2_serNum": 51651, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///2/303/O2", "atom2_id": "///J/184/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 606, "atom1_serNum": 4939, "atom2_serNum": 51652, "donAcc_type": "acceptable", "distance": 3.108, "atom1_id": "///2/304/O2'", "atom2_id": "///J/184/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 607, "atom1_serNum": 4955, "atom2_serNum": 50489, "donAcc_type": "standard", "distance": 3.948, "atom1_id": "///2/305/O4'", "atom2_id": "///J/41/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 608, "atom1_serNum": 4964, "atom2_serNum": 51635, "donAcc_type": "standard", "distance": 3.343, "atom1_id": "///2/305/N3", "atom2_id": "///J/182/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 609, "atom1_serNum": 4971, "atom2_serNum": 50490, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///2/306/OP2", "atom2_id": "///J/41/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 610, "atom1_serNum": 4997, "atom2_serNum": 50525, "donAcc_type": "acceptable", "distance": 3.335, "atom1_id": "///2/307/O3'", "atom2_id": "///J/45/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 611, "atom1_serNum": 5009, "atom2_serNum": 50523, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///2/307/N2", "atom2_id": "///J/45/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 612, "atom1_serNum": 5010, "atom2_serNum": 50520, "donAcc_type": "standard", "distance": 3.293, "atom1_id": "///2/307/N3", "atom2_id": "///J/45/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 613, "atom1_serNum": 5013, "atom2_serNum": 50587, "donAcc_type": "standard", "distance": 3.341, "atom1_id": "///2/308/OP1", "atom2_id": "///J/53/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 614, "atom1_serNum": 5022, "atom2_serNum": 5038, "donAcc_type": "acceptable", "distance": 2.791, "atom1_id": "///2/308/O2'", "atom2_id": "///2/309/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 615, "atom1_serNum": 5037, "atom2_serNum": 50608, "donAcc_type": "acceptable", "distance": 3.527, "atom1_id": "///2/309/OP2", "atom2_id": "///J/55/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 616, "atom1_serNum": 5045, "atom2_serNum": 5064, "donAcc_type": "acceptable", "distance": 3.097, "atom1_id": "///2/309/O2'", "atom2_id": "///2/310/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 617, "atom1_serNum": 5064, "atom2_serNum": 5599, "donAcc_type": "questionable", "distance": 3.226, "atom1_id": "///2/310/O4'", "atom2_id": "///2/340/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 618, "atom1_serNum": 5115, "atom2_serNum": 5545, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///2/312/O6", "atom2_id": "///2/337/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 619, "atom1_serNum": 5116, "atom2_serNum": 5543, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/312/N1", "atom2_id": "///2/337/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 620, "atom1_serNum": 5118, "atom2_serNum": 5542, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///2/312/N2", "atom2_id": "///2/337/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 621, "atom1_serNum": 5158, "atom2_serNum": 5524, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///2/314/N3", "atom2_id": "///2/336/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 622, "atom1_serNum": 5160, "atom2_serNum": 5523, "donAcc_type": "standard", "distance": 3.026, "atom1_id": "///2/314/O4", "atom2_id": "///2/336/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 623, "atom1_serNum": 5177, "atom2_serNum": 5503, "donAcc_type": "standard", "distance": 2.747, "atom1_id": "///2/315/O2", "atom2_id": "///2/335/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 624, "atom1_serNum": 5178, "atom2_serNum": 5501, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/315/N3", "atom2_id": "///2/335/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 625, "atom1_serNum": 5180, "atom2_serNum": 5500, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///2/315/N4", "atom2_id": "///2/335/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 626, "atom1_serNum": 5193, "atom2_serNum": 5212, "donAcc_type": "acceptable", "distance": 3.235, "atom1_id": "///2/316/O2'", "atom2_id": "///2/317/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 627, "atom1_serNum": 5200, "atom2_serNum": 5480, "donAcc_type": "standard", "distance": 3.910, "atom1_id": "///2/316/O6", "atom2_id": "///2/334/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 628, "atom1_serNum": 5200, "atom2_serNum": 48239, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///2/316/O6", "atom2_id": "///H/187/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 629, "atom1_serNum": 5208, "atom2_serNum": 48205, "donAcc_type": "standard", "distance": 2.702, "atom1_id": "///2/317/OP2", "atom2_id": "///H/183/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 630, "atom1_serNum": 5236, "atom2_serNum": 5249, "donAcc_type": "acceptable", "distance": 2.930, "atom1_id": "///2/318/O2'", "atom2_id": "///2/319/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 631, "atom1_serNum": 5243, "atom2_serNum": 48228, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///2/318/N6", "atom2_id": "///H/186/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 632, "atom1_serNum": 5244, "atom2_serNum": 5457, "donAcc_type": "questionable", "distance": 2.540, "atom1_id": "///2/318/N1", "atom2_id": "///2/333/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 633, "atom1_serNum": 5246, "atom2_serNum": 5460, "donAcc_type": "standard", "distance": 3.067, "atom1_id": "///2/318/N3", "atom2_id": "///2/333/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 634, "atom1_serNum": 5258, "atom2_serNum": 5271, "donAcc_type": "acceptable", "distance": 2.824, "atom1_id": "///2/319/O2'", "atom2_id": "///2/320/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 635, "atom1_serNum": 5258, "atom2_serNum": 5274, "donAcc_type": "acceptable", "distance": 2.806, "atom1_id": "///2/319/O2'", "atom2_id": "///2/320/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 636, "atom1_serNum": 5262, "atom2_serNum": 5437, "donAcc_type": "standard", "distance": 2.698, "atom1_id": "///2/319/O2", "atom2_id": "///2/332/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 637, "atom1_serNum": 5263, "atom2_serNum": 5435, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/319/N3", "atom2_id": "///2/332/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 638, "atom1_serNum": 5265, "atom2_serNum": 5434, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///2/319/N4", "atom2_id": "///2/332/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 639, "atom1_serNum": 5285, "atom2_serNum": 5414, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///2/320/O6", "atom2_id": "///2/331/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 640, "atom1_serNum": 5286, "atom2_serNum": 5412, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/320/N1", "atom2_id": "///2/331/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 641, "atom1_serNum": 5288, "atom2_serNum": 5411, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///2/320/N2", "atom2_id": "///2/331/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 642, "atom1_serNum": 5305, "atom2_serNum": 5394, "donAcc_type": "standard", "distance": 3.581, "atom1_id": "///2/321/O2", "atom2_id": "///2/330/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 643, "atom1_serNum": 5306, "atom2_serNum": 5392, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///2/321/N3", "atom2_id": "///2/330/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 644, "atom1_serNum": 5308, "atom2_serNum": 5391, "donAcc_type": "standard", "distance": 2.367, "atom1_id": "///2/321/N4", "atom2_id": "///2/330/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 645, "atom1_serNum": 5321, "atom2_serNum": 5371, "donAcc_type": "acceptable", "distance": 2.740, "atom1_id": "///2/322/O2'", "atom2_id": "///2/329/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 646, "atom1_serNum": 5325, "atom2_serNum": 5369, "donAcc_type": "standard", "distance": 2.294, "atom1_id": "///2/322/O2", "atom2_id": "///2/329/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 647, "atom1_serNum": 5325, "atom2_serNum": 5371, "donAcc_type": "standard", "distance": 3.237, "atom1_id": "///2/322/O2", "atom2_id": "///2/329/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 648, "atom1_serNum": 5361, "atom2_serNum": 5377, "donAcc_type": "acceptable", "distance": 2.874, "atom1_id": "///2/329/O2'", "atom2_id": "///2/330/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 649, "atom1_serNum": 5361, "atom2_serNum": 5380, "donAcc_type": "acceptable", "distance": 2.844, "atom1_id": "///2/329/O2'", "atom2_id": "///2/330/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 650, "atom1_serNum": 5431, "atom2_serNum": 48256, "donAcc_type": "standard", "distance": 3.234, "atom1_id": "///2/332/N7", "atom2_id": "///H/189/NE", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 651, "atom1_serNum": 5434, "atom2_serNum": 48229, "donAcc_type": "standard", "distance": 2.641, "atom1_id": "///2/332/O6", "atom2_id": "///H/186/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 652, "atom1_serNum": 5434, "atom2_serNum": 48259, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///2/332/O6", "atom2_id": "///H/189/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 653, "atom1_serNum": 5441, "atom2_serNum": 48269, "donAcc_type": "standard", "distance": 3.493, "atom1_id": "///2/333/OP1", "atom2_id": "///H/190/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 654, "atom1_serNum": 5465, "atom2_serNum": 48269, "donAcc_type": "standard", "distance": 3.225, "atom1_id": "///2/334/OP2", "atom2_id": "///H/190/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 655, "atom1_serNum": 5465, "atom2_serNum": 48270, "donAcc_type": "standard", "distance": 2.546, "atom1_id": "///2/334/OP2", "atom2_id": "///H/190/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 656, "atom1_serNum": 5683, "atom2_serNum": 44179, "donAcc_type": "standard", "distance": 4.000, "atom1_id": "///2/344/O3'", "atom2_id": "///F/127/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 657, "atom1_serNum": 5685, "atom2_serNum": 43416, "donAcc_type": "acceptable", "distance": 3.701, "atom1_id": "///2/344/O2'", "atom2_id": "///F/35/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 658, "atom1_serNum": 5701, "atom2_serNum": 43412, "donAcc_type": "questionable", "distance": 2.914, "atom1_id": "///2/345/O4'", "atom2_id": "///F/34/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 659, "atom1_serNum": 5705, "atom2_serNum": 43409, "donAcc_type": "acceptable", "distance": 3.937, "atom1_id": "///2/345/O2'", "atom2_id": "///F/34/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 660, "atom1_serNum": 5716, "atom2_serNum": 43439, "donAcc_type": "standard", "distance": 3.746, "atom1_id": "///2/346/OP1", "atom2_id": "///F/38/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 661, "atom1_serNum": 5725, "atom2_serNum": 43388, "donAcc_type": "acceptable", "distance": 3.511, "atom1_id": "///2/346/O2'", "atom2_id": "///F/30/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 662, "atom1_serNum": 5790, "atom2_serNum": 5808, "donAcc_type": "acceptable", "distance": 2.814, "atom1_id": "///2/349/O2'", "atom2_id": "///2/350/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 663, "atom1_serNum": 5812, "atom2_serNum": 6510, "donAcc_type": "acceptable", "distance": 3.215, "atom1_id": "///2/350/O2'", "atom2_id": "///2/383/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 664, "atom1_serNum": 5812, "atom2_serNum": 6511, "donAcc_type": "acceptable", "distance": 2.175, "atom1_id": "///2/350/O2'", "atom2_id": "///2/383/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 665, "atom1_serNum": 5812, "atom2_serNum": 6513, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///2/350/O2'", "atom2_id": "///2/383/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 666, "atom1_serNum": 5825, "atom2_serNum": 6513, "donAcc_type": "standard", "distance": 3.874, "atom1_id": "///2/351/O5'", "atom2_id": "///2/383/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 667, "atom1_serNum": 5842, "atom2_serNum": 55235, "donAcc_type": "standard", "distance": 3.623, "atom1_id": "///2/351/N2", "atom2_id": "///M/130/OE2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 668, "atom1_serNum": 5846, "atom2_serNum": 55304, "donAcc_type": "standard", "distance": 3.423, "atom1_id": "///2/352/OP1", "atom2_id": "///M/139/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 669, "atom1_serNum": 5855, "atom2_serNum": 55234, "donAcc_type": "acceptable", "distance": 3.017, "atom1_id": "///2/352/O2'", "atom2_id": "///M/130/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 670, "atom1_serNum": 5859, "atom2_serNum": 54737, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///2/352/O2", "atom2_id": "///M/71/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 671, "atom1_serNum": 5887, "atom2_serNum": 55061, "donAcc_type": "standard", "distance": 3.481, "atom1_id": "///2/354/OP2", "atom2_id": "///M/107/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 672, "atom1_serNum": 5891, "atom2_serNum": 14928, "donAcc_type": "acceptable", "distance": 3.555, "atom1_id": "///2/354/O4'", "atom2_id": "///2/854/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 673, "atom1_serNum": 5906, "atom2_serNum": 54913, "donAcc_type": "acceptable", "distance": 3.227, "atom1_id": "///2/355/OP1", "atom2_id": "///M/92/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 674, "atom1_serNum": 5906, "atom2_serNum": 55041, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///2/355/OP1", "atom2_id": "///M/105/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 675, "atom1_serNum": 5929, "atom2_serNum": 55042, "donAcc_type": "standard", "distance": 3.573, "atom1_id": "///2/356/OP1", "atom2_id": "///M/105/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 676, "atom1_serNum": 5930, "atom2_serNum": 55041, "donAcc_type": "standard", "distance": 2.539, "atom1_id": "///2/356/OP2", "atom2_id": "///M/105/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 677, "atom1_serNum": 5962, "atom2_serNum": 6982, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///2/357/O2", "atom2_id": "///2/405/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 678, "atom1_serNum": 5963, "atom2_serNum": 6980, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/357/N3", "atom2_id": "///2/405/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 679, "atom1_serNum": 5965, "atom2_serNum": 6979, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///2/357/N4", "atom2_id": "///2/405/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 680, "atom1_serNum": 5969, "atom2_serNum": 66596, "donAcc_type": "standard", "distance": 3.413, "atom1_id": "///2/358/OP1", "atom2_id": "///Y/18/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 681, "atom1_serNum": 5982, "atom2_serNum": 6959, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///2/358/O2", "atom2_id": "///2/404/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 682, "atom1_serNum": 5983, "atom2_serNum": 6957, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/358/N3", "atom2_id": "///2/404/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 683, "atom1_serNum": 5985, "atom2_serNum": 6956, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///2/358/N4", "atom2_id": "///2/404/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 684, "atom1_serNum": 6002, "atom2_serNum": 6934, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///2/359/O2", "atom2_id": "///2/403/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 685, "atom1_serNum": 6002, "atom2_serNum": 6936, "donAcc_type": "standard", "distance": 3.342, "atom1_id": "///2/359/O2", "atom2_id": "///2/403/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 686, "atom1_serNum": 6003, "atom2_serNum": 6933, "donAcc_type": "standard", "distance": 3.620, "atom1_id": "///2/359/N3", "atom2_id": "///2/403/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 687, "atom1_serNum": 6025, "atom2_serNum": 6868, "donAcc_type": "standard", "distance": 2.379, "atom1_id": "///2/360/N6", "atom2_id": "///2/400/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 688, "atom1_serNum": 6026, "atom2_serNum": 6891, "donAcc_type": "standard", "distance": 3.929, "atom1_id": "///2/360/N1", "atom2_id": "///2/401/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 689, "atom1_serNum": 6028, "atom2_serNum": 6072, "donAcc_type": "questionable", "distance": 3.040, "atom1_id": "///2/360/N3", "atom2_id": "///2/363/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 690, "atom1_serNum": 6036, "atom2_serNum": 21820, "donAcc_type": "standard", "distance": 3.545, "atom1_id": "///2/361/O4'", "atom2_id": "///2/1175/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 691, "atom1_serNum": 6064, "atom2_serNum": 6911, "donAcc_type": "questionable", "distance": 2.896, "atom1_id": "///2/362/O2", "atom2_id": "///2/402/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 692, "atom1_serNum": 6065, "atom2_serNum": 6913, "donAcc_type": "standard", "distance": 3.250, "atom1_id": "///2/362/N3", "atom2_id": "///2/402/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 693, "atom1_serNum": 6087, "atom2_serNum": 6868, "donAcc_type": "standard", "distance": 2.540, "atom1_id": "///2/363/N6", "atom2_id": "///2/400/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 694, "atom1_serNum": 6088, "atom2_serNum": 6799, "donAcc_type": "acceptable", "distance": 2.909, "atom1_id": "///2/363/N1", "atom2_id": "///2/397/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 695, "atom1_serNum": 6102, "atom2_serNum": 6892, "donAcc_type": "acceptable", "distance": 2.725, "atom1_id": "///2/364/O2'", "atom2_id": "///2/401/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 696, "atom1_serNum": 6109, "atom2_serNum": 6786, "donAcc_type": "standard", "distance": 3.073, "atom1_id": "///2/364/N6", "atom2_id": "///2/396/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 697, "atom1_serNum": 6110, "atom2_serNum": 6784, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///2/364/N1", "atom2_id": "///2/396/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 698, "atom1_serNum": 6124, "atom2_serNum": 6906, "donAcc_type": "acceptable", "distance": 3.003, "atom1_id": "///2/365/O2'", "atom2_id": "///2/402/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 699, "atom1_serNum": 6128, "atom2_serNum": 6766, "donAcc_type": "standard", "distance": 2.685, "atom1_id": "///2/365/O2", "atom2_id": "///2/395/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 700, "atom1_serNum": 6129, "atom2_serNum": 6764, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/365/N3", "atom2_id": "///2/395/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 701, "atom1_serNum": 6131, "atom2_serNum": 6763, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///2/365/N4", "atom2_id": "///2/395/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 702, "atom1_serNum": 6144, "atom2_serNum": 6243, "donAcc_type": "acceptable", "distance": 3.453, "atom1_id": "///2/366/O2'", "atom2_id": "///2/371/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 703, "atom1_serNum": 6148, "atom2_serNum": 6741, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///2/366/O2", "atom2_id": "///2/394/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 704, "atom1_serNum": 6149, "atom2_serNum": 6740, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///2/366/N3", "atom2_id": "///2/394/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 705, "atom1_serNum": 6164, "atom2_serNum": 6180, "donAcc_type": "acceptable", "distance": 2.922, "atom1_id": "///2/367/O2'", "atom2_id": "///2/368/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 706, "atom1_serNum": 6224, "atom2_serNum": 6581, "donAcc_type": "acceptable", "distance": 3.637, "atom1_id": "///2/370/O2'", "atom2_id": "///2/387/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 707, "atom1_serNum": 6231, "atom2_serNum": 6678, "donAcc_type": "standard", "distance": 2.445, "atom1_id": "///2/370/O6", "atom2_id": "///2/391/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 708, "atom1_serNum": 6232, "atom2_serNum": 6296, "donAcc_type": "standard", "distance": 2.645, "atom1_id": "///2/370/N1", "atom2_id": "///2/373/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 709, "atom1_serNum": 6234, "atom2_serNum": 6293, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///2/370/N2", "atom2_id": "///2/373/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 710, "atom1_serNum": 6239, "atom2_serNum": 50234, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///2/371/OP2", "atom2_id": "///J/11/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 711, "atom1_serNum": 6247, "atom2_serNum": 6743, "donAcc_type": "acceptable", "distance": 3.428, "atom1_id": "///2/371/O2'", "atom2_id": "///2/394/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 712, "atom1_serNum": 6260, "atom2_serNum": 55282, "donAcc_type": "standard", "distance": 2.521, "atom1_id": "///2/372/OP1", "atom2_id": "///M/136/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 713, "atom1_serNum": 6265, "atom2_serNum": 6743, "donAcc_type": "standard", "distance": 3.836, "atom1_id": "///2/372/O4'", "atom2_id": "///2/394/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 714, "atom1_serNum": 6265, "atom2_serNum": 6752, "donAcc_type": "questionable", "distance": 3.351, "atom1_id": "///2/372/O4'", "atom2_id": "///2/395/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 715, "atom1_serNum": 6267, "atom2_serNum": 50264, "donAcc_type": "standard", "distance": 3.550, "atom1_id": "///2/372/O3'", "atom2_id": "///J/13/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 716, "atom1_serNum": 6273, "atom2_serNum": 6733, "donAcc_type": "acceptable", "distance": 2.159, "atom1_id": "///2/372/O2", "atom2_id": "///2/394/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 717, "atom1_serNum": 6274, "atom2_serNum": 6699, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///2/372/N3", "atom2_id": "///2/392/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 718, "atom1_serNum": 6276, "atom2_serNum": 6698, "donAcc_type": "standard", "distance": 3.053, "atom1_id": "///2/372/O4", "atom2_id": "///2/392/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 719, "atom1_serNum": 6280, "atom2_serNum": 55273, "donAcc_type": "acceptable", "distance": 3.375, "atom1_id": "///2/373/OP1", "atom2_id": "///M/135/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 720, "atom1_serNum": 6280, "atom2_serNum": 55288, "donAcc_type": "acceptable", "distance": 2.452, "atom1_id": "///2/373/OP1", "atom2_id": "///M/137/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 721, "atom1_serNum": 6289, "atom2_serNum": 54825, "donAcc_type": "acceptable", "distance": 3.033, "atom1_id": "///2/373/O2'", "atom2_id": "///M/83/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 722, "atom1_serNum": 6296, "atom2_serNum": 6678, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///2/373/O6", "atom2_id": "///2/391/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 723, "atom1_serNum": 6297, "atom2_serNum": 6676, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///2/373/N1", "atom2_id": "///2/391/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 724, "atom1_serNum": 6299, "atom2_serNum": 6675, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///2/373/N2", "atom2_id": "///2/391/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 725, "atom1_serNum": 6299, "atom2_serNum": 54829, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/373/N2", "atom2_id": "///M/83/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 726, "atom1_serNum": 6303, "atom2_serNum": 54650, "donAcc_type": "standard", "distance": 2.512, "atom1_id": "///2/374/OP1", "atom2_id": "///M/59/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 727, "atom1_serNum": 6304, "atom2_serNum": 55273, "donAcc_type": "acceptable", "distance": 3.647, "atom1_id": "///2/374/OP2", "atom2_id": "///M/135/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 728, "atom1_serNum": 6316, "atom2_serNum": 6556, "donAcc_type": "standard", "distance": 3.545, "atom1_id": "///2/374/N7", "atom2_id": "///2/385/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 729, "atom1_serNum": 6319, "atom2_serNum": 6554, "donAcc_type": "standard", "distance": 3.071, "atom1_id": "///2/374/O6", "atom2_id": "///2/385/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 730, "atom1_serNum": 6319, "atom2_serNum": 6658, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///2/374/O6", "atom2_id": "///2/390/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 731, "atom1_serNum": 6320, "atom2_serNum": 6656, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///2/374/N1", "atom2_id": "///2/390/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 732, "atom1_serNum": 6322, "atom2_serNum": 6655, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///2/374/N2", "atom2_id": "///2/390/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 733, "atom1_serNum": 6335, "atom2_serNum": 54257, "donAcc_type": "acceptable", "distance": 3.557, "atom1_id": "///2/375/O2'", "atom2_id": "///M/11/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 734, "atom1_serNum": 6340, "atom2_serNum": 6637, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///2/375/N3", "atom2_id": "///2/389/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 735, "atom1_serNum": 6342, "atom2_serNum": 6636, "donAcc_type": "standard", "distance": 3.006, "atom1_id": "///2/375/O4", "atom2_id": "///2/389/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 736, "atom1_serNum": 6347, "atom2_serNum": 54641, "donAcc_type": "standard", "distance": 3.313, "atom1_id": "///2/376/OP2", "atom2_id": "///M/58/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 737, "atom1_serNum": 6362, "atom2_serNum": 6616, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///2/376/N6", "atom2_id": "///2/388/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 738, "atom1_serNum": 6363, "atom2_serNum": 6614, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/376/N1", "atom2_id": "///2/388/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 739, "atom1_serNum": 6368, "atom2_serNum": 50952, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///2/377/OP1", "atom2_id": "///J/98/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 740, "atom1_serNum": 6384, "atom2_serNum": 6596, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/377/O6", "atom2_id": "///2/387/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 741, "atom1_serNum": 6385, "atom2_serNum": 6594, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/377/N1", "atom2_id": "///2/387/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 742, "atom1_serNum": 6387, "atom2_serNum": 6593, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///2/377/N2", "atom2_id": "///2/387/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 743, "atom1_serNum": 6391, "atom2_serNum": 50944, "donAcc_type": "standard", "distance": 3.680, "atom1_id": "///2/378/OP1", "atom2_id": "///J/98/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 744, "atom1_serNum": 6407, "atom2_serNum": 6576, "donAcc_type": "standard", "distance": 3.477, "atom1_id": "///2/378/O4", "atom2_id": "///2/386/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 745, "atom1_serNum": 6411, "atom2_serNum": 50432, "donAcc_type": "standard", "distance": 3.750, "atom1_id": "///2/379/OP1", "atom2_id": "///J/34/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 746, "atom1_serNum": 6411, "atom2_serNum": 51631, "donAcc_type": "standard", "distance": 3.273, "atom1_id": "///2/379/OP1", "atom2_id": "///J/181/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 747, "atom1_serNum": 6418, "atom2_serNum": 50619, "donAcc_type": "standard", "distance": 3.245, "atom1_id": "///2/379/O3'", "atom2_id": "///J/56/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 748, "atom1_serNum": 6420, "atom2_serNum": 50409, "donAcc_type": "acceptable", "distance": 3.297, "atom1_id": "///2/379/O2'", "atom2_id": "///J/31/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 749, "atom1_serNum": 6424, "atom2_serNum": 50181, "donAcc_type": "standard", "distance": 3.065, "atom1_id": "///2/379/O2", "atom2_id": "///J/5/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 750, "atom1_serNum": 6431, "atom2_serNum": 50418, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///2/380/OP1", "atom2_id": "///J/31/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 751, "atom1_serNum": 6431, "atom2_serNum": 50619, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/380/OP1", "atom2_id": "///J/56/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 752, "atom1_serNum": 6432, "atom2_serNum": 50596, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///2/380/OP2", "atom2_id": "///J/54/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 753, "atom1_serNum": 6432, "atom2_serNum": 50619, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///2/380/OP2", "atom2_id": "///J/56/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 754, "atom1_serNum": 6432, "atom2_serNum": 51630, "donAcc_type": "questionable", "distance": 3.057, "atom1_id": "///2/380/OP2", "atom2_id": "///J/181/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 755, "atom1_serNum": 6432, "atom2_serNum": 51631, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///2/380/OP2", "atom2_id": "///J/181/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 756, "atom1_serNum": 6447, "atom2_serNum": 51611, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///2/380/O6", "atom2_id": "///J/178/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 757, "atom1_serNum": 6448, "atom2_serNum": 6495, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/380/N1", "atom2_id": "///2/383/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 758, "atom1_serNum": 6450, "atom2_serNum": 6495, "donAcc_type": "standard", "distance": 2.581, "atom1_id": "///2/380/N2", "atom2_id": "///2/383/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 759, "atom1_serNum": 6450, "atom2_serNum": 6507, "donAcc_type": "standard", "distance": 3.612, "atom1_id": "///2/380/N2", "atom2_id": "///2/383/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 760, "atom1_serNum": 6454, "atom2_serNum": 50418, "donAcc_type": "standard", "distance": 3.128, "atom1_id": "///2/381/OP1", "atom2_id": "///J/31/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 761, "atom1_serNum": 6454, "atom2_serNum": 50552, "donAcc_type": "standard", "distance": 3.805, "atom1_id": "///2/381/OP1", "atom2_id": "///J/49/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 762, "atom1_serNum": 6455, "atom2_serNum": 50596, "donAcc_type": "standard", "distance": 3.271, "atom1_id": "///2/381/OP2", "atom2_id": "///J/54/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 763, "atom1_serNum": 6463, "atom2_serNum": 6476, "donAcc_type": "acceptable", "distance": 3.033, "atom1_id": "///2/381/O2'", "atom2_id": "///2/382/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 764, "atom1_serNum": 6470, "atom2_serNum": 50379, "donAcc_type": "standard", "distance": 2.661, "atom1_id": "///2/381/N4", "atom2_id": "///J/27/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 765, "atom1_serNum": 6490, "atom2_serNum": 6510, "donAcc_type": "standard", "distance": 3.279, "atom1_id": "///2/382/N4", "atom2_id": "///2/383/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 766, "atom1_serNum": 6503, "atom2_serNum": 6517, "donAcc_type": "acceptable", "distance": 2.419, "atom1_id": "///2/383/O2'", "atom2_id": "///2/384/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 767, "atom1_serNum": 6503, "atom2_serNum": 6519, "donAcc_type": "acceptable", "distance": 2.644, "atom1_id": "///2/383/O2'", "atom2_id": "///2/384/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 768, "atom1_serNum": 6503, "atom2_serNum": 6522, "donAcc_type": "acceptable", "distance": 2.527, "atom1_id": "///2/383/O2'", "atom2_id": "///2/384/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 769, "atom1_serNum": 6503, "atom2_serNum": 55256, "donAcc_type": "acceptable", "distance": 3.261, "atom1_id": "///2/383/O2'", "atom2_id": "///M/133/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 770, "atom1_serNum": 6517, "atom2_serNum": 55251, "donAcc_type": "standard", "distance": 2.512, "atom1_id": "///2/384/OP1", "atom2_id": "///M/132/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 771, "atom1_serNum": 6526, "atom2_serNum": 6560, "donAcc_type": "acceptable", "distance": 3.323, "atom1_id": "///2/384/O2'", "atom2_id": "///2/386/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 772, "atom1_serNum": 6533, "atom2_serNum": 50184, "donAcc_type": "standard", "distance": 2.354, "atom1_id": "///2/384/O4", "atom2_id": "///J/5/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 773, "atom1_serNum": 6539, "atom2_serNum": 6596, "donAcc_type": "standard", "distance": 3.288, "atom1_id": "///2/385/O5'", "atom2_id": "///2/387/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 774, "atom1_serNum": 6544, "atom2_serNum": 50233, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///2/385/O3'", "atom2_id": "///J/10/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 775, "atom1_serNum": 6546, "atom2_serNum": 50233, "donAcc_type": "acceptable", "distance": 2.792, "atom1_id": "///2/385/O2'", "atom2_id": "///J/10/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 776, "atom1_serNum": 6553, "atom2_serNum": 6658, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///2/385/O6", "atom2_id": "///2/390/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 777, "atom1_serNum": 6561, "atom2_serNum": 50200, "donAcc_type": "standard", "distance": 3.978, "atom1_id": "///2/386/OP2", "atom2_id": "///J/7/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 778, "atom1_serNum": 6561, "atom2_serNum": 50233, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///2/386/OP2", "atom2_id": "///J/10/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 779, "atom1_serNum": 6569, "atom2_serNum": 50171, "donAcc_type": "acceptable", "distance": 3.912, "atom1_id": "///2/386/O2'", "atom2_id": "///J/4/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 780, "atom1_serNum": 6580, "atom2_serNum": 50224, "donAcc_type": "standard", "distance": 3.650, "atom1_id": "///2/387/OP1", "atom2_id": "///J/9/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 781, "atom1_serNum": 6581, "atom2_serNum": 50233, "donAcc_type": "standard", "distance": 3.247, "atom1_id": "///2/387/OP2", "atom2_id": "///J/10/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 782, "atom1_serNum": 6616, "atom2_serNum": 6636, "donAcc_type": "standard", "distance": 2.596, "atom1_id": "///2/388/O4", "atom2_id": "///2/389/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 783, "atom1_serNum": 6639, "atom2_serNum": 50852, "donAcc_type": "questionable", "distance": 3.128, "atom1_id": "///2/389/N3", "atom2_id": "///J/86/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 784, "atom1_serNum": 6651, "atom2_serNum": 54231, "donAcc_type": "acceptable", "distance": 3.469, "atom1_id": "///2/390/O2'", "atom2_id": "///M/8/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 785, "atom1_serNum": 6725, "atom2_serNum": 54813, "donAcc_type": "standard", "distance": 2.670, "atom1_id": "///2/394/OP2", "atom2_id": "///M/81/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 786, "atom1_serNum": 6756, "atom2_serNum": 50259, "donAcc_type": "acceptable", "distance": 3.069, "atom1_id": "///2/395/O2'", "atom2_id": "///J/13/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 787, "atom1_serNum": 6766, "atom2_serNum": 50268, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///2/395/N2", "atom2_id": "///J/14/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 788, "atom1_serNum": 6771, "atom2_serNum": 54796, "donAcc_type": "standard", "distance": 2.647, "atom1_id": "///2/396/OP2", "atom2_id": "///M/79/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 789, "atom1_serNum": 6779, "atom2_serNum": 6884, "donAcc_type": "acceptable", "distance": 3.453, "atom1_id": "///2/396/O2'", "atom2_id": "///2/401/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 790, "atom1_serNum": 6790, "atom2_serNum": 55052, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///2/397/OP1", "atom2_id": "///M/106/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 791, "atom1_serNum": 6791, "atom2_serNum": 55069, "donAcc_type": "standard", "distance": 2.603, "atom1_id": "///2/397/OP2", "atom2_id": "///M/108/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 792, "atom1_serNum": 6813, "atom2_serNum": 6844, "donAcc_type": "acceptable", "distance": 2.798, "atom1_id": "///2/398/OP1", "atom2_id": "///2/399/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 793, "atom1_serNum": 6822, "atom2_serNum": 18645, "donAcc_type": "acceptable", "distance": 2.812, "atom1_id": "///2/398/O2'", "atom2_id": "///2/1027/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 794, "atom1_serNum": 6848, "atom2_serNum": 55043, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///2/399/O2", "atom2_id": "///M/106/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 795, "atom1_serNum": 6848, "atom2_serNum": 55049, "donAcc_type": "acceptable", "distance": 2.540, "atom1_id": "///2/399/O2", "atom2_id": "///M/106/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 796, "atom1_serNum": 6849, "atom2_serNum": 55031, "donAcc_type": "standard", "distance": 2.473, "atom1_id": "///2/399/N3", "atom2_id": "///M/104/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 797, "atom1_serNum": 6851, "atom2_serNum": 12851, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///2/399/N4", "atom2_id": "///2/680/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 798, "atom1_serNum": 6864, "atom2_serNum": 6876, "donAcc_type": "acceptable", "distance": 3.082, "atom1_id": "///2/400/O2'", "atom2_id": "///2/401/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 799, "atom1_serNum": 6876, "atom2_serNum": 6913, "donAcc_type": "standard", "distance": 3.504, "atom1_id": "///2/401/OP2", "atom2_id": "///2/402/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 800, "atom1_serNum": 6897, "atom2_serNum": 50270, "donAcc_type": "acceptable", "distance": 3.609, "atom1_id": "///2/402/OP1", "atom2_id": "///J/14/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 801, "atom1_serNum": 6995, "atom2_serNum": 7031, "donAcc_type": "acceptable", "distance": 2.768, "atom1_id": "///2/406/O2'", "atom2_id": "///2/408/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 802, "atom1_serNum": 7006, "atom2_serNum": 7025, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///2/407/OP1", "atom2_id": "///2/407/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 803, "atom1_serNum": 7038, "atom2_serNum": 7058, "donAcc_type": "acceptable", "distance": 2.902, "atom1_id": "///2/408/O2'", "atom2_id": "///2/409/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 804, "atom1_serNum": 7038, "atom2_serNum": 7071, "donAcc_type": "acceptable", "distance": 2.999, "atom1_id": "///2/408/O2'", "atom2_id": "///2/410/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 805, "atom1_serNum": 7064, "atom2_serNum": 7542, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///2/409/O2", "atom2_id": "///2/431/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 806, "atom1_serNum": 7065, "atom2_serNum": 7540, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/409/N3", "atom2_id": "///2/431/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 807, "atom1_serNum": 7067, "atom2_serNum": 7443, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///2/409/N4", "atom2_id": "///2/427/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 808, "atom1_serNum": 7067, "atom2_serNum": 7539, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///2/409/N4", "atom2_id": "///2/431/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 809, "atom1_serNum": 7072, "atom2_serNum": 7421, "donAcc_type": "questionable", "distance": 2.982, "atom1_id": "///2/410/OP2", "atom2_id": "///2/426/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 810, "atom1_serNum": 7087, "atom2_serNum": 7519, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///2/410/O6", "atom2_id": "///2/430/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 811, "atom1_serNum": 7088, "atom2_serNum": 7517, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/410/N1", "atom2_id": "///2/430/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 812, "atom1_serNum": 7090, "atom2_serNum": 7516, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///2/410/N2", "atom2_id": "///2/430/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 813, "atom1_serNum": 7103, "atom2_serNum": 7122, "donAcc_type": "acceptable", "distance": 3.171, "atom1_id": "///2/411/O2'", "atom2_id": "///2/412/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 814, "atom1_serNum": 7110, "atom2_serNum": 7499, "donAcc_type": "standard", "distance": 3.438, "atom1_id": "///2/411/O6", "atom2_id": "///2/429/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 815, "atom1_serNum": 7111, "atom2_serNum": 7497, "donAcc_type": "standard", "distance": 3.089, "atom1_id": "///2/411/N1", "atom2_id": "///2/429/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 816, "atom1_serNum": 7113, "atom2_serNum": 7496, "donAcc_type": "standard", "distance": 2.613, "atom1_id": "///2/411/N2", "atom2_id": "///2/429/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 817, "atom1_serNum": 7113, "atom2_serNum": 7497, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///2/411/N2", "atom2_id": "///2/429/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 818, "atom1_serNum": 7118, "atom2_serNum": 7417, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///2/412/OP2", "atom2_id": "///2/425/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 819, "atom1_serNum": 7126, "atom2_serNum": 14165, "donAcc_type": "acceptable", "distance": 2.980, "atom1_id": "///2/412/O2'", "atom2_id": "///2/812/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 820, "atom1_serNum": 7126, "atom2_serNum": 14187, "donAcc_type": "acceptable", "distance": 2.967, "atom1_id": "///2/412/O2'", "atom2_id": "///2/813/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 821, "atom1_serNum": 7130, "atom2_serNum": 7417, "donAcc_type": "standard", "distance": 3.574, "atom1_id": "///2/412/N7", "atom2_id": "///2/425/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 822, "atom1_serNum": 7136, "atom2_serNum": 14166, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/412/N2", "atom2_id": "///2/812/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 823, "atom1_serNum": 7137, "atom2_serNum": 14165, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///2/412/N3", "atom2_id": "///2/812/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 824, "atom1_serNum": 7142, "atom2_serNum": 14187, "donAcc_type": "standard", "distance": 3.404, "atom1_id": "///2/413/O5'", "atom2_id": "///2/813/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 825, "atom1_serNum": 7156, "atom2_serNum": 7394, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///2/413/O6", "atom2_id": "///2/424/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 826, "atom1_serNum": 7157, "atom2_serNum": 7392, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/413/N1", "atom2_id": "///2/424/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 827, "atom1_serNum": 7159, "atom2_serNum": 7391, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///2/413/N2", "atom2_id": "///2/424/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 828, "atom1_serNum": 7163, "atom2_serNum": 14202, "donAcc_type": "acceptable", "distance": 2.586, "atom1_id": "///2/414/OP1", "atom2_id": "///2/814/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 829, "atom1_serNum": 7179, "atom2_serNum": 7374, "donAcc_type": "standard", "distance": 2.999, "atom1_id": "///2/414/N6", "atom2_id": "///2/423/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 830, "atom1_serNum": 7180, "atom2_serNum": 7372, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///2/414/N1", "atom2_id": "///2/423/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 831, "atom1_serNum": 7201, "atom2_serNum": 7354, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///2/415/N6", "atom2_id": "///2/422/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 832, "atom1_serNum": 7202, "atom2_serNum": 7352, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///2/415/N1", "atom2_id": "///2/422/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 833, "atom1_serNum": 7216, "atom2_serNum": 12262, "donAcc_type": "acceptable", "distance": 2.766, "atom1_id": "///2/416/O2'", "atom2_id": "///2/652/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 834, "atom1_serNum": 7216, "atom2_serNum": 12278, "donAcc_type": "acceptable", "distance": 3.661, "atom1_id": "///2/416/O2'", "atom2_id": "///2/653/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 835, "atom1_serNum": 7220, "atom2_serNum": 7332, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/416/O2", "atom2_id": "///2/421/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 836, "atom1_serNum": 7221, "atom2_serNum": 7331, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///2/416/N3", "atom2_id": "///2/421/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 837, "atom1_serNum": 7236, "atom2_serNum": 7308, "donAcc_type": "acceptable", "distance": 3.692, "atom1_id": "///2/417/O2'", "atom2_id": "///2/420/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 838, "atom1_serNum": 7286, "atom2_serNum": 12481, "donAcc_type": "standard", "distance": 2.356, "atom1_id": "///2/419/N1", "atom2_id": "///2/662/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 839, "atom1_serNum": 7288, "atom2_serNum": 12478, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///2/419/N2", "atom2_id": "///2/662/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 840, "atom1_serNum": 7292, "atom2_serNum": 66111, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///2/420/OP1", "atom2_id": "///X/88/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 841, "atom1_serNum": 7301, "atom2_serNum": 12439, "donAcc_type": "acceptable", "distance": 2.551, "atom1_id": "///2/420/O2'", "atom2_id": "///2/660/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 842, "atom1_serNum": 7301, "atom2_serNum": 12441, "donAcc_type": "acceptable", "distance": 3.336, "atom1_id": "///2/420/O2'", "atom2_id": "///2/660/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 843, "atom1_serNum": 7311, "atom2_serNum": 12461, "donAcc_type": "standard", "distance": 3.511, "atom1_id": "///2/420/N2", "atom2_id": "///2/661/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 844, "atom1_serNum": 7312, "atom2_serNum": 12441, "donAcc_type": "standard", "distance": 3.786, "atom1_id": "///2/420/N3", "atom2_id": "///2/660/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 845, "atom1_serNum": 7312, "atom2_serNum": 12459, "donAcc_type": "standard", "distance": 3.668, "atom1_id": "///2/420/N3", "atom2_id": "///2/661/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 846, "atom1_serNum": 7334, "atom2_serNum": 12260, "donAcc_type": "standard", "distance": 3.053, "atom1_id": "///2/421/N2", "atom2_id": "///2/652/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 847, "atom1_serNum": 7334, "atom2_serNum": 12273, "donAcc_type": "standard", "distance": 3.421, "atom1_id": "///2/421/N2", "atom2_id": "///2/653/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 848, "atom1_serNum": 7338, "atom2_serNum": 54971, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///2/422/OP1", "atom2_id": "///M/98/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 849, "atom1_serNum": 7347, "atom2_serNum": 12253, "donAcc_type": "acceptable", "distance": 2.904, "atom1_id": "///2/422/O2'", "atom2_id": "///2/652/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 850, "atom1_serNum": 7463, "atom2_serNum": 7499, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///2/428/OP1", "atom2_id": "///2/429/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 851, "atom1_serNum": 7464, "atom2_serNum": 7499, "donAcc_type": "standard", "distance": 3.171, "atom1_id": "///2/428/OP2", "atom2_id": "///2/429/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 852, "atom1_serNum": 7492, "atom2_serNum": 14144, "donAcc_type": "acceptable", "distance": 2.674, "atom1_id": "///2/429/O2'", "atom2_id": "///2/811/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 853, "atom1_serNum": 7496, "atom2_serNum": 14143, "donAcc_type": "standard", "distance": 3.340, "atom1_id": "///2/429/O2", "atom2_id": "///2/811/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 854, "atom1_serNum": 7523, "atom2_serNum": 43191, "donAcc_type": "standard", "distance": 3.470, "atom1_id": "///2/431/OP1", "atom2_id": "///F/6/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 855, "atom1_serNum": 7569, "atom2_serNum": 50366, "donAcc_type": "standard", "distance": 2.392, "atom1_id": "///2/433/OP1", "atom2_id": "///J/25/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 856, "atom1_serNum": 7578, "atom2_serNum": 7596, "donAcc_type": "acceptable", "distance": 3.034, "atom1_id": "///2/433/O2'", "atom2_id": "///2/434/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 857, "atom1_serNum": 7591, "atom2_serNum": 50365, "donAcc_type": "standard", "distance": 2.610, "atom1_id": "///2/434/OP1", "atom2_id": "///J/25/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 858, "atom1_serNum": 7592, "atom2_serNum": 50366, "donAcc_type": "standard", "distance": 3.315, "atom1_id": "///2/434/OP2", "atom2_id": "///J/25/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 859, "atom1_serNum": 7600, "atom2_serNum": 7619, "donAcc_type": "acceptable", "distance": 2.964, "atom1_id": "///2/434/O2'", "atom2_id": "///2/435/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 860, "atom1_serNum": 7600, "atom2_serNum": 7659, "donAcc_type": "acceptable", "distance": 2.636, "atom1_id": "///2/434/O2'", "atom2_id": "///2/437/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 861, "atom1_serNum": 7600, "atom2_serNum": 8453, "donAcc_type": "acceptable", "distance": 3.552, "atom1_id": "///2/434/O2'", "atom2_id": "///2/473/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 862, "atom1_serNum": 7610, "atom2_serNum": 8455, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///2/434/N2", "atom2_id": "///2/473/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 863, "atom1_serNum": 7615, "atom2_serNum": 7945, "donAcc_type": "questionable", "distance": 2.704, "atom1_id": "///2/435/OP2", "atom2_id": "///2/450/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 864, "atom1_serNum": 7636, "atom2_serNum": 7960, "donAcc_type": "standard", "distance": 3.714, "atom1_id": "///2/436/OP1", "atom2_id": "///2/450/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 865, "atom1_serNum": 7636, "atom2_serNum": 8402, "donAcc_type": "acceptable", "distance": 3.039, "atom1_id": "///2/436/OP1", "atom2_id": "///2/471/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 866, "atom1_serNum": 7637, "atom2_serNum": 8402, "donAcc_type": "acceptable", "distance": 2.533, "atom1_id": "///2/436/OP2", "atom2_id": "///2/471/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 867, "atom1_serNum": 7643, "atom2_serNum": 8452, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///2/436/O3'", "atom2_id": "///2/473/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 868, "atom1_serNum": 7645, "atom2_serNum": 7664, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///2/436/O2'", "atom2_id": "///2/437/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 869, "atom1_serNum": 7652, "atom2_serNum": 8108, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///2/436/O6", "atom2_id": "///2/457/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 870, "atom1_serNum": 7653, "atom2_serNum": 8106, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///2/436/N1", "atom2_id": "///2/457/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 871, "atom1_serNum": 7655, "atom2_serNum": 8105, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///2/436/N2", "atom2_id": "///2/457/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 872, "atom1_serNum": 7659, "atom2_serNum": 8452, "donAcc_type": "standard", "distance": 3.458, "atom1_id": "///2/437/OP1", "atom2_id": "///2/473/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 873, "atom1_serNum": 7675, "atom2_serNum": 8088, "donAcc_type": "standard", "distance": 2.803, "atom1_id": "///2/437/O6", "atom2_id": "///2/456/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 874, "atom1_serNum": 7675, "atom2_serNum": 8108, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///2/437/O6", "atom2_id": "///2/457/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 875, "atom1_serNum": 7676, "atom2_serNum": 8086, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///2/437/N1", "atom2_id": "///2/456/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 876, "atom1_serNum": 7676, "atom2_serNum": 8106, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/437/N1", "atom2_id": "///2/457/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 877, "atom1_serNum": 7678, "atom2_serNum": 8085, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///2/437/N2", "atom2_id": "///2/456/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 878, "atom1_serNum": 7678, "atom2_serNum": 8105, "donAcc_type": "standard", "distance": 2.571, "atom1_id": "///2/437/N2", "atom2_id": "///2/457/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 879, "atom1_serNum": 7683, "atom2_serNum": 7701, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///2/438/OP2", "atom2_id": "///2/438/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 880, "atom1_serNum": 7698, "atom2_serNum": 8066, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///2/438/O6", "atom2_id": "///2/455/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 881, "atom1_serNum": 7698, "atom2_serNum": 8088, "donAcc_type": "standard", "distance": 3.103, "atom1_id": "///2/438/O6", "atom2_id": "///2/456/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 882, "atom1_serNum": 7714, "atom2_serNum": 34713, "donAcc_type": "acceptable", "distance": 3.177, "atom1_id": "///2/439/O2'", "atom2_id": "///2/1799/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 883, "atom1_serNum": 7721, "atom2_serNum": 8046, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///2/439/N6", "atom2_id": "///2/454/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 884, "atom1_serNum": 7722, "atom2_serNum": 8044, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///2/439/N1", "atom2_id": "///2/454/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 885, "atom1_serNum": 7727, "atom2_serNum": 34693, "donAcc_type": "acceptable", "distance": 2.828, "atom1_id": "///2/440/OP1", "atom2_id": "///2/1798/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 886, "atom1_serNum": 7732, "atom2_serNum": 33562, "donAcc_type": "standard", "distance": 3.753, "atom1_id": "///2/440/O4'", "atom2_id": "///2/1736/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 887, "atom1_serNum": 7734, "atom2_serNum": 50156, "donAcc_type": "standard", "distance": 3.531, "atom1_id": "///2/440/O3'", "atom2_id": "///J/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 888, "atom1_serNum": 7736, "atom2_serNum": 33575, "donAcc_type": "acceptable", "distance": 3.237, "atom1_id": "///2/440/O2'", "atom2_id": "///2/1737/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 889, "atom1_serNum": 7743, "atom2_serNum": 8026, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///2/440/O6", "atom2_id": "///2/453/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 890, "atom1_serNum": 7744, "atom2_serNum": 8024, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/440/N1", "atom2_id": "///2/453/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 891, "atom1_serNum": 7746, "atom2_serNum": 8023, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///2/440/N2", "atom2_id": "///2/453/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 892, "atom1_serNum": 7755, "atom2_serNum": 33575, "donAcc_type": "acceptable", "distance": 3.244, "atom1_id": "///2/441/O4'", "atom2_id": "///2/1737/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 893, "atom1_serNum": 7759, "atom2_serNum": 7775, "donAcc_type": "acceptable", "distance": 3.015, "atom1_id": "///2/441/O2'", "atom2_id": "///2/442/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 894, "atom1_serNum": 7763, "atom2_serNum": 8006, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///2/441/O2", "atom2_id": "///2/452/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 895, "atom1_serNum": 7764, "atom2_serNum": 8004, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/441/N3", "atom2_id": "///2/452/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 896, "atom1_serNum": 7766, "atom2_serNum": 8003, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///2/441/N4", "atom2_id": "///2/452/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 897, "atom1_serNum": 7784, "atom2_serNum": 7938, "donAcc_type": "standard", "distance": 3.194, "atom1_id": "///2/442/N3", "atom2_id": "///2/449/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 898, "atom1_serNum": 7786, "atom2_serNum": 7935, "donAcc_type": "standard", "distance": 2.527, "atom1_id": "///2/442/N4", "atom2_id": "///2/449/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 899, "atom1_serNum": 7799, "atom2_serNum": 47451, "donAcc_type": "acceptable", "distance": 2.676, "atom1_id": "///2/443/O2'", "atom2_id": "///H/89/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 900, "atom1_serNum": 7803, "atom2_serNum": 7894, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///2/443/O2", "atom2_id": "///2/447/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 901, "atom1_serNum": 7804, "atom2_serNum": 7891, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///2/443/N3", "atom2_id": "///2/447/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 902, "atom1_serNum": 7806, "atom2_serNum": 7891, "donAcc_type": "questionable", "distance": 2.560, "atom1_id": "///2/443/O4", "atom2_id": "///2/447/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 903, "atom1_serNum": 7819, "atom2_serNum": 7868, "donAcc_type": "acceptable", "distance": 2.982, "atom1_id": "///2/444/O2'", "atom2_id": "///2/446/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 904, "atom1_serNum": 7819, "atom2_serNum": 7871, "donAcc_type": "acceptable", "distance": 2.811, "atom1_id": "///2/444/O2'", "atom2_id": "///2/446/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 905, "atom1_serNum": 7827, "atom2_serNum": 7879, "donAcc_type": "standard", "distance": 3.176, "atom1_id": "///2/444/N1", "atom2_id": "///2/447/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 906, "atom1_serNum": 7829, "atom2_serNum": 7879, "donAcc_type": "standard", "distance": 2.416, "atom1_id": "///2/444/N2", "atom2_id": "///2/447/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 907, "atom1_serNum": 7840, "atom2_serNum": 50544, "donAcc_type": "standard", "distance": 3.168, "atom1_id": "///2/445/O3'", "atom2_id": "///J/47/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 908, "atom1_serNum": 7842, "atom2_serNum": 7855, "donAcc_type": "acceptable", "distance": 2.262, "atom1_id": "///2/445/O2'", "atom2_id": "///2/446/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 909, "atom1_serNum": 7855, "atom2_serNum": 50563, "donAcc_type": "standard", "distance": 2.564, "atom1_id": "///2/446/OP1", "atom2_id": "///J/50/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 910, "atom1_serNum": 7856, "atom2_serNum": 50375, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///2/446/OP2", "atom2_id": "///J/26/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 911, "atom1_serNum": 7864, "atom2_serNum": 43164, "donAcc_type": "acceptable", "distance": 2.433, "atom1_id": "///2/446/O2'", "atom2_id": "///F/3/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 912, "atom1_serNum": 7878, "atom2_serNum": 50562, "donAcc_type": "standard", "distance": 3.706, "atom1_id": "///2/447/OP1", "atom2_id": "///J/49/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 913, "atom1_serNum": 7887, "atom2_serNum": 7905, "donAcc_type": "acceptable", "distance": 3.298, "atom1_id": "///2/447/O2'", "atom2_id": "///2/448/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 914, "atom1_serNum": 7922, "atom2_serNum": 50346, "donAcc_type": "standard", "distance": 3.406, "atom1_id": "///2/449/OP1", "atom2_id": "///J/23/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 915, "atom1_serNum": 7927, "atom2_serNum": 43170, "donAcc_type": "standard", "distance": 3.266, "atom1_id": "///2/449/O4'", "atom2_id": "///F/3/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 916, "atom1_serNum": 7931, "atom2_serNum": 7949, "donAcc_type": "acceptable", "distance": 2.899, "atom1_id": "///2/449/O2'", "atom2_id": "///2/450/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 917, "atom1_serNum": 7931, "atom2_serNum": 7953, "donAcc_type": "acceptable", "distance": 3.199, "atom1_id": "///2/449/O2'", "atom2_id": "///2/450/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 918, "atom1_serNum": 7931, "atom2_serNum": 8000, "donAcc_type": "acceptable", "distance": 2.828, "atom1_id": "///2/449/O2'", "atom2_id": "///2/452/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 919, "atom1_serNum": 7939, "atom2_serNum": 47445, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///2/449/N1", "atom2_id": "///H/88/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 920, "atom1_serNum": 7992, "atom2_serNum": 47445, "donAcc_type": "standard", "distance": 3.841, "atom1_id": "///2/452/O4'", "atom2_id": "///H/88/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 921, "atom1_serNum": 8019, "atom2_serNum": 47469, "donAcc_type": "acceptable", "distance": 2.164, "atom1_id": "///2/453/O2'", "atom2_id": "///H/92/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 922, "atom1_serNum": 8030, "atom2_serNum": 47486, "donAcc_type": "standard", "distance": 3.644, "atom1_id": "///2/454/OP1", "atom2_id": "///H/94/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 923, "atom1_serNum": 8037, "atom2_serNum": 47493, "donAcc_type": "standard", "distance": 3.607, "atom1_id": "///2/454/O3'", "atom2_id": "///H/94/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 924, "atom1_serNum": 8039, "atom2_serNum": 33552, "donAcc_type": "acceptable", "distance": 2.695, "atom1_id": "///2/454/O2'", "atom2_id": "///2/1736/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 925, "atom1_serNum": 8059, "atom2_serNum": 33530, "donAcc_type": "acceptable", "distance": 3.035, "atom1_id": "///2/455/O2'", "atom2_id": "///2/1735/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 926, "atom1_serNum": 8059, "atom2_serNum": 33540, "donAcc_type": "acceptable", "distance": 2.536, "atom1_id": "///2/455/O2'", "atom2_id": "///2/1735/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 927, "atom1_serNum": 8067, "atom2_serNum": 34736, "donAcc_type": "acceptable", "distance": 3.827, "atom1_id": "///2/455/N1", "atom2_id": "///2/1800/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 928, "atom1_serNum": 8081, "atom2_serNum": 8097, "donAcc_type": "acceptable", "distance": 2.651, "atom1_id": "///2/456/O2'", "atom2_id": "///2/457/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 929, "atom1_serNum": 8081, "atom2_serNum": 34758, "donAcc_type": "acceptable", "distance": 3.431, "atom1_id": "///2/456/O2'", "atom2_id": "///2/1801/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 930, "atom1_serNum": 8101, "atom2_serNum": 8117, "donAcc_type": "acceptable", "distance": 3.208, "atom1_id": "///2/457/O2'", "atom2_id": "///2/458/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 931, "atom1_serNum": 8128, "atom2_serNum": 8409, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///2/458/N6", "atom2_id": "///2/471/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 932, "atom1_serNum": 8129, "atom2_serNum": 8410, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///2/458/N1", "atom2_id": "///2/471/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 933, "atom1_serNum": 8129, "atom2_serNum": 8412, "donAcc_type": "standard", "distance": 3.184, "atom1_id": "///2/458/N1", "atom2_id": "///2/471/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 934, "atom1_serNum": 8147, "atom2_serNum": 8389, "donAcc_type": "standard", "distance": 3.399, "atom1_id": "///2/459/O2", "atom2_id": "///2/470/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 935, "atom1_serNum": 8190, "atom2_serNum": 8343, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///2/461/N3", "atom2_id": "///2/468/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 936, "atom1_serNum": 8192, "atom2_serNum": 8342, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///2/461/O4", "atom2_id": "///2/468/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 937, "atom1_serNum": 8209, "atom2_serNum": 8322, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///2/462/O2", "atom2_id": "///2/467/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 938, "atom1_serNum": 8210, "atom2_serNum": 8320, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///2/462/N3", "atom2_id": "///2/467/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 939, "atom1_serNum": 8212, "atom2_serNum": 8319, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///2/462/N4", "atom2_id": "///2/467/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 940, "atom1_serNum": 8229, "atom2_serNum": 8297, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///2/463/O2", "atom2_id": "///2/466/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 941, "atom1_serNum": 8237, "atom2_serNum": 8271, "donAcc_type": "questionable", "distance": 3.033, "atom1_id": "///2/464/OP2", "atom2_id": "///2/465/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 942, "atom1_serNum": 8267, "atom2_serNum": 8281, "donAcc_type": "acceptable", "distance": 3.029, "atom1_id": "///2/465/O2'", "atom2_id": "///2/466/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 943, "atom1_serNum": 8289, "atom2_serNum": 47210, "donAcc_type": "acceptable", "distance": 3.179, "atom1_id": "///2/466/O2'", "atom2_id": "///H/59/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 944, "atom1_serNum": 8289, "atom2_serNum": 47309, "donAcc_type": "acceptable", "distance": 2.609, "atom1_id": "///2/466/O2'", "atom2_id": "///H/72/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 945, "atom1_serNum": 8305, "atom2_serNum": 47309, "donAcc_type": "standard", "distance": 3.396, "atom1_id": "///2/467/O5'", "atom2_id": "///H/72/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 946, "atom1_serNum": 8308, "atom2_serNum": 47211, "donAcc_type": "standard", "distance": 3.832, "atom1_id": "///2/467/O4'", "atom2_id": "///H/59/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 947, "atom1_serNum": 8379, "atom2_serNum": 8398, "donAcc_type": "acceptable", "distance": 2.952, "atom1_id": "///2/470/O2'", "atom2_id": "///2/471/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 948, "atom1_serNum": 8425, "atom2_serNum": 8458, "donAcc_type": "acceptable", "distance": 2.373, "atom1_id": "///2/472/O2'", "atom2_id": "///2/474/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 949, "atom1_serNum": 8429, "atom2_serNum": 8497, "donAcc_type": "standard", "distance": 2.970, "atom1_id": "///2/472/O2", "atom2_id": "///2/475/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 950, "atom1_serNum": 8430, "atom2_serNum": 8517, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///2/472/N3", "atom2_id": "///2/476/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 951, "atom1_serNum": 8467, "atom2_serNum": 9182, "donAcc_type": "acceptable", "distance": 3.625, "atom1_id": "///2/474/O2'", "atom2_id": "///2/508/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 952, "atom1_serNum": 8477, "atom2_serNum": 9168, "donAcc_type": "acceptable", "distance": 3.365, "atom1_id": "///2/474/N2", "atom2_id": "///2/507/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 953, "atom1_serNum": 8486, "atom2_serNum": 9168, "donAcc_type": "acceptable", "distance": 3.015, "atom1_id": "///2/475/O4'", "atom2_id": "///2/507/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 954, "atom1_serNum": 8490, "atom2_serNum": 9179, "donAcc_type": "acceptable", "distance": 2.885, "atom1_id": "///2/475/O2'", "atom2_id": "///2/507/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 955, "atom1_serNum": 8510, "atom2_serNum": 8750, "donAcc_type": "acceptable", "distance": 2.547, "atom1_id": "///2/476/O2'", "atom2_id": "///2/487/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 956, "atom1_serNum": 8510, "atom2_serNum": 8770, "donAcc_type": "acceptable", "distance": 3.014, "atom1_id": "///2/476/O2'", "atom2_id": "///2/488/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 957, "atom1_serNum": 8520, "atom2_serNum": 8770, "donAcc_type": "acceptable", "distance": 2.382, "atom1_id": "///2/476/N3", "atom2_id": "///2/488/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 958, "atom1_serNum": 8523, "atom2_serNum": 8728, "donAcc_type": "acceptable", "distance": 3.277, "atom1_id": "///2/477/OP1", "atom2_id": "///2/486/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 959, "atom1_serNum": 8641, "atom2_serNum": 8688, "donAcc_type": "acceptable", "distance": 2.524, "atom1_id": "///2/482/O2'", "atom2_id": "///2/484/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 960, "atom1_serNum": 8649, "atom2_serNum": 8698, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///2/482/N1", "atom2_id": "///2/485/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 961, "atom1_serNum": 8651, "atom2_serNum": 8698, "donAcc_type": "standard", "distance": 2.357, "atom1_id": "///2/482/N2", "atom2_id": "///2/485/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 962, "atom1_serNum": 8655, "atom2_serNum": 66824, "donAcc_type": "standard", "distance": 3.320, "atom1_id": "///2/483/OP1", "atom2_id": "///Y/48/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 963, "atom1_serNum": 8724, "atom2_serNum": 9328, "donAcc_type": "questionable", "distance": 3.265, "atom1_id": "///2/486/O4'", "atom2_id": "///2/514/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 964, "atom1_serNum": 8728, "atom2_serNum": 8743, "donAcc_type": "acceptable", "distance": 3.118, "atom1_id": "///2/486/O2'", "atom2_id": "///2/487/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 965, "atom1_serNum": 8728, "atom2_serNum": 9311, "donAcc_type": "acceptable", "distance": 3.468, "atom1_id": "///2/486/O2'", "atom2_id": "///2/513/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 966, "atom1_serNum": 8738, "atom2_serNum": 9309, "donAcc_type": "standard", "distance": 3.329, "atom1_id": "///2/486/N3", "atom2_id": "///2/513/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 967, "atom1_serNum": 8743, "atom2_serNum": 9311, "donAcc_type": "standard", "distance": 3.600, "atom1_id": "///2/487/O5'", "atom2_id": "///2/513/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 968, "atom1_serNum": 8750, "atom2_serNum": 8768, "donAcc_type": "acceptable", "distance": 3.625, "atom1_id": "///2/487/O2'", "atom2_id": "///2/488/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 969, "atom1_serNum": 8755, "atom2_serNum": 9287, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///2/487/N3", "atom2_id": "///2/512/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 970, "atom1_serNum": 8757, "atom2_serNum": 9286, "donAcc_type": "standard", "distance": 3.010, "atom1_id": "///2/487/O4", "atom2_id": "///2/512/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 971, "atom1_serNum": 8782, "atom2_serNum": 9178, "donAcc_type": "standard", "distance": 3.600, "atom1_id": "///2/489/OP2", "atom2_id": "///2/507/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 972, "atom1_serNum": 8797, "atom2_serNum": 9266, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///2/489/N6", "atom2_id": "///2/511/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 973, "atom1_serNum": 8798, "atom2_serNum": 9264, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///2/489/N1", "atom2_id": "///2/511/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 974, "atom1_serNum": 8812, "atom2_serNum": 10608, "donAcc_type": "acceptable", "distance": 2.642, "atom1_id": "///2/490/O2'", "atom2_id": "///2/574/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 975, "atom1_serNum": 8816, "atom2_serNum": 9246, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///2/490/O2", "atom2_id": "///2/510/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 976, "atom1_serNum": 8816, "atom2_serNum": 10607, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///2/490/O2", "atom2_id": "///2/574/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 977, "atom1_serNum": 8817, "atom2_serNum": 9244, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/490/N3", "atom2_id": "///2/510/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 978, "atom1_serNum": 8819, "atom2_serNum": 9243, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///2/490/N4", "atom2_id": "///2/510/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 979, "atom1_serNum": 8824, "atom2_serNum": 68369, "donAcc_type": "acceptable", "distance": 3.478, "atom1_id": "///2/491/OP2", "atom2_id": "///Z/103/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 980, "atom1_serNum": 8832, "atom2_serNum": 8876, "donAcc_type": "acceptable", "distance": 3.240, "atom1_id": "///2/491/O2'", "atom2_id": "///2/493/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 981, "atom1_serNum": 8836, "atom2_serNum": 8879, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///2/491/O2", "atom2_id": "///2/493/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 982, "atom1_serNum": 8836, "atom2_serNum": 9223, "donAcc_type": "standard", "distance": 2.772, "atom1_id": "///2/491/O2", "atom2_id": "///2/509/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 983, "atom1_serNum": 8837, "atom2_serNum": 9221, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///2/491/N3", "atom2_id": "///2/509/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 984, "atom1_serNum": 8839, "atom2_serNum": 9220, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///2/491/N4", "atom2_id": "///2/509/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 985, "atom1_serNum": 8844, "atom2_serNum": 68409, "donAcc_type": "standard", "distance": 2.536, "atom1_id": "///2/492/OP2", "atom2_id": "///Z/107/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 986, "atom1_serNum": 8852, "atom2_serNum": 9152, "donAcc_type": "acceptable", "distance": 3.379, "atom1_id": "///2/492/O2'", "atom2_id": "///2/506/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 987, "atom1_serNum": 8856, "atom2_serNum": 8901, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///2/492/O2", "atom2_id": "///2/494/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 988, "atom1_serNum": 8856, "atom2_serNum": 9198, "donAcc_type": "standard", "distance": 3.354, "atom1_id": "///2/492/O2", "atom2_id": "///2/508/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 989, "atom1_serNum": 8857, "atom2_serNum": 9198, "donAcc_type": "standard", "distance": 3.338, "atom1_id": "///2/492/N3", "atom2_id": "///2/508/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 990, "atom1_serNum": 8859, "atom2_serNum": 9160, "donAcc_type": "standard", "distance": 2.375, "atom1_id": "///2/492/N4", "atom2_id": "///2/507/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 991, "atom1_serNum": 8859, "atom2_serNum": 9195, "donAcc_type": "standard", "distance": 3.612, "atom1_id": "///2/492/N4", "atom2_id": "///2/508/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 992, "atom1_serNum": 8868, "atom2_serNum": 10596, "donAcc_type": "questionable", "distance": 3.309, "atom1_id": "///2/493/O4'", "atom2_id": "///2/574/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 993, "atom1_serNum": 8879, "atom2_serNum": 9247, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///2/493/N6", "atom2_id": "///2/510/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 994, "atom1_serNum": 8880, "atom2_serNum": 9236, "donAcc_type": "acceptable", "distance": 3.255, "atom1_id": "///2/493/N1", "atom2_id": "///2/510/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 995, "atom1_serNum": 8882, "atom2_serNum": 10591, "donAcc_type": "questionable", "distance": 2.906, "atom1_id": "///2/493/N3", "atom2_id": "///2/574/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 996, "atom1_serNum": 8901, "atom2_serNum": 9223, "donAcc_type": "questionable", "distance": 3.352, "atom1_id": "///2/494/N4", "atom2_id": "///2/509/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 997, "atom1_serNum": 8905, "atom2_serNum": 43610, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///2/495/OP1", "atom2_id": "///F/58/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 998, "atom1_serNum": 8919, "atom2_serNum": 9199, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///2/495/N3", "atom2_id": "///2/508/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 999, "atom1_serNum": 8921, "atom2_serNum": 9198, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///2/495/O4", "atom2_id": "///2/508/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1000, "atom1_serNum": 8925, "atom2_serNum": 43538, "donAcc_type": "standard", "distance": 3.321, "atom1_id": "///2/496/OP1", "atom2_id": "///F/49/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1001, "atom1_serNum": 8925, "atom2_serNum": 43541, "donAcc_type": "standard", "distance": 2.495, "atom1_id": "///2/496/OP1", "atom2_id": "///F/49/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1002, "atom1_serNum": 8938, "atom2_serNum": 9155, "donAcc_type": "standard", "distance": 2.775, "atom1_id": "///2/496/O2", "atom2_id": "///2/506/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1003, "atom1_serNum": 8939, "atom2_serNum": 9153, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/496/N3", "atom2_id": "///2/506/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1004, "atom1_serNum": 8941, "atom2_serNum": 9152, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///2/496/N4", "atom2_id": "///2/506/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1005, "atom1_serNum": 8950, "atom2_serNum": 43210, "donAcc_type": "standard", "distance": 3.294, "atom1_id": "///2/497/O4'", "atom2_id": "///F/8/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1006, "atom1_serNum": 8958, "atom2_serNum": 9132, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///2/497/O2", "atom2_id": "///2/505/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1007, "atom1_serNum": 8959, "atom2_serNum": 9130, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/497/N3", "atom2_id": "///2/505/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1008, "atom1_serNum": 8961, "atom2_serNum": 9129, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/497/N4", "atom2_id": "///2/505/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1009, "atom1_serNum": 8974, "atom2_serNum": 8990, "donAcc_type": "acceptable", "distance": 3.149, "atom1_id": "///2/498/O2'", "atom2_id": "///2/499/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1010, "atom1_serNum": 8978, "atom2_serNum": 9109, "donAcc_type": "standard", "distance": 3.355, "atom1_id": "///2/498/O2", "atom2_id": "///2/504/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1011, "atom1_serNum": 8979, "atom2_serNum": 9107, "donAcc_type": "standard", "distance": 3.176, "atom1_id": "///2/498/N3", "atom2_id": "///2/504/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1012, "atom1_serNum": 8981, "atom2_serNum": 9106, "donAcc_type": "standard", "distance": 3.119, "atom1_id": "///2/498/N4", "atom2_id": "///2/504/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1013, "atom1_serNum": 8981, "atom2_serNum": 9129, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///2/498/N4", "atom2_id": "///2/505/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1014, "atom1_serNum": 9059, "atom2_serNum": 9072, "donAcc_type": "acceptable", "distance": 3.090, "atom1_id": "///2/502/O2'", "atom2_id": "///2/503/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1015, "atom1_serNum": 9059, "atom2_serNum": 9075, "donAcc_type": "acceptable", "distance": 2.877, "atom1_id": "///2/502/O2'", "atom2_id": "///2/503/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1016, "atom1_serNum": 9070, "atom2_serNum": 43646, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/503/OP1", "atom2_id": "///F/62/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1017, "atom1_serNum": 9071, "atom2_serNum": 43646, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///2/503/OP2", "atom2_id": "///F/62/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1018, "atom1_serNum": 9136, "atom2_serNum": 68418, "donAcc_type": "standard", "distance": 2.464, "atom1_id": "///2/506/OP1", "atom2_id": "///Z/108/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1019, "atom1_serNum": 9159, "atom2_serNum": 68418, "donAcc_type": "standard", "distance": 3.148, "atom1_id": "///2/507/OP1", "atom2_id": "///Z/108/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1020, "atom1_serNum": 9160, "atom2_serNum": 68380, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///2/507/OP2", "atom2_id": "///Z/104/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1021, "atom1_serNum": 9168, "atom2_serNum": 9182, "donAcc_type": "acceptable", "distance": 2.698, "atom1_id": "///2/507/O2'", "atom2_id": "///2/508/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1022, "atom1_serNum": 9175, "atom2_serNum": 68389, "donAcc_type": "standard", "distance": 3.404, "atom1_id": "///2/507/O6", "atom2_id": "///Z/105/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1023, "atom1_serNum": 9227, "atom2_serNum": 51857, "donAcc_type": "standard", "distance": 3.255, "atom1_id": "///2/510/OP1", "atom2_id": "///K/4/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1024, "atom1_serNum": 9246, "atom2_serNum": 10607, "donAcc_type": "questionable", "distance": 3.222, "atom1_id": "///2/510/N2", "atom2_id": "///2/574/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1025, "atom1_serNum": 9259, "atom2_serNum": 10629, "donAcc_type": "acceptable", "distance": 3.852, "atom1_id": "///2/511/O2'", "atom2_id": "///2/575/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1026, "atom1_serNum": 9259, "atom2_serNum": 10651, "donAcc_type": "acceptable", "distance": 2.599, "atom1_id": "///2/511/O2'", "atom2_id": "///2/576/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1027, "atom1_serNum": 9259, "atom2_serNum": 10652, "donAcc_type": "acceptable", "distance": 2.771, "atom1_id": "///2/511/O2'", "atom2_id": "///2/576/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1028, "atom1_serNum": 9344, "atom2_serNum": 9380, "donAcc_type": "acceptable", "distance": 2.539, "atom1_id": "///2/515/O2'", "atom2_id": "///2/517/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1029, "atom1_serNum": 9375, "atom2_serNum": 12070, "donAcc_type": "acceptable", "distance": 2.385, "atom1_id": "///2/516/N1", "atom2_id": "///2/643/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1030, "atom1_serNum": 9423, "atom2_serNum": 51925, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///2/519/OP1", "atom2_id": "///K/11/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1031, "atom1_serNum": 9432, "atom2_serNum": 14457, "donAcc_type": "acceptable", "distance": 3.192, "atom1_id": "///2/519/O2'", "atom2_id": "///2/826/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1032, "atom1_serNum": 9445, "atom2_serNum": 51926, "donAcc_type": "standard", "distance": 3.209, "atom1_id": "///2/520/OP1", "atom2_id": "///K/12/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1033, "atom1_serNum": 9454, "atom2_serNum": 14445, "donAcc_type": "acceptable", "distance": 2.358, "atom1_id": "///2/520/O2'", "atom2_id": "///2/825/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1034, "atom1_serNum": 9467, "atom2_serNum": 52221, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///2/521/OP1", "atom2_id": "///K/45/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1035, "atom1_serNum": 9467, "atom2_serNum": 52224, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///2/521/OP1", "atom2_id": "///K/45/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1036, "atom1_serNum": 9468, "atom2_serNum": 52224, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///2/521/OP2", "atom2_id": "///K/45/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1037, "atom1_serNum": 9474, "atom2_serNum": 53061, "donAcc_type": "acceptable", "distance": 3.510, "atom1_id": "///2/521/O3'", "atom2_id": "///K/146/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1038, "atom1_serNum": 9489, "atom2_serNum": 53061, "donAcc_type": "acceptable", "distance": 3.050, "atom1_id": "///2/522/OP1", "atom2_id": "///K/146/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1039, "atom1_serNum": 9490, "atom2_serNum": 52224, "donAcc_type": "standard", "distance": 3.425, "atom1_id": "///2/522/OP2", "atom2_id": "///K/45/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1040, "atom1_serNum": 9498, "atom2_serNum": 9513, "donAcc_type": "acceptable", "distance": 3.120, "atom1_id": "///2/522/O2'", "atom2_id": "///2/523/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1041, "atom1_serNum": 9498, "atom2_serNum": 52932, "donAcc_type": "acceptable", "distance": 2.825, "atom1_id": "///2/522/O2'", "atom2_id": "///K/131/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1042, "atom1_serNum": 9505, "atom2_serNum": 12083, "donAcc_type": "standard", "distance": 3.765, "atom1_id": "///2/522/N6", "atom2_id": "///2/644/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1043, "atom1_serNum": 9505, "atom2_serNum": 52182, "donAcc_type": "questionable", "distance": 3.164, "atom1_id": "///2/522/N6", "atom2_id": "///K/41/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1044, "atom1_serNum": 9511, "atom2_serNum": 52896, "donAcc_type": "standard", "distance": 3.551, "atom1_id": "///2/523/OP1", "atom2_id": "///K/127/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1045, "atom1_serNum": 9527, "atom2_serNum": 11027, "donAcc_type": "standard", "distance": 3.073, "atom1_id": "///2/523/N6", "atom2_id": "///2/594/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1046, "atom1_serNum": 9527, "atom2_serNum": 12074, "donAcc_type": "standard", "distance": 3.630, "atom1_id": "///2/523/N6", "atom2_id": "///2/643/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1047, "atom1_serNum": 9533, "atom2_serNum": 9558, "donAcc_type": "questionable", "distance": 3.312, "atom1_id": "///2/524/OP1", "atom2_id": "///2/525/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1048, "atom1_serNum": 9546, "atom2_serNum": 11014, "donAcc_type": "questionable", "distance": 3.147, "atom1_id": "///2/524/O2", "atom2_id": "///2/594/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1049, "atom1_serNum": 9547, "atom2_serNum": 11027, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///2/524/N3", "atom2_id": "///2/594/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1050, "atom1_serNum": 9549, "atom2_serNum": 11030, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///2/524/O4", "atom2_id": "///2/594/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1051, "atom1_serNum": 9553, "atom2_serNum": 71827, "donAcc_type": "questionable", "distance": 3.071, "atom1_id": "///2/525/OP1", "atom2_id": "///f/100/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1052, "atom1_serNum": 9560, "atom2_serNum": 71842, "donAcc_type": "standard", "distance": 2.470, "atom1_id": "///2/525/O3'", "atom2_id": "///f/101/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1053, "atom1_serNum": 9562, "atom2_serNum": 9580, "donAcc_type": "acceptable", "distance": 3.193, "atom1_id": "///2/525/O2'", "atom2_id": "///2/526/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1054, "atom1_serNum": 9575, "atom2_serNum": 71842, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///2/526/OP1", "atom2_id": "///f/101/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1055, "atom1_serNum": 9591, "atom2_serNum": 10902, "donAcc_type": "standard", "distance": 3.366, "atom1_id": "///2/526/N6", "atom2_id": "///2/588/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1056, "atom1_serNum": 9592, "atom2_serNum": 10291, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///2/526/N1", "atom2_id": "///2/559/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1057, "atom1_serNum": 9597, "atom2_serNum": 52855, "donAcc_type": "acceptable", "distance": 3.060, "atom1_id": "///2/527/OP1", "atom2_id": "///K/122/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1058, "atom1_serNum": 9610, "atom2_serNum": 10293, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///2/527/O2", "atom2_id": "///2/559/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1059, "atom1_serNum": 9633, "atom2_serNum": 10247, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///2/528/N6", "atom2_id": "///2/557/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1060, "atom1_serNum": 9634, "atom2_serNum": 10245, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///2/528/N1", "atom2_id": "///2/557/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1061, "atom1_serNum": 9655, "atom2_serNum": 10227, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///2/529/N6", "atom2_id": "///2/556/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1062, "atom1_serNum": 9656, "atom2_serNum": 10225, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///2/529/N1", "atom2_id": "///2/556/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1063, "atom1_serNum": 9674, "atom2_serNum": 10225, "donAcc_type": "standard", "distance": 2.714, "atom1_id": "///2/530/O2", "atom2_id": "///2/556/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1064, "atom1_serNum": 9675, "atom2_serNum": 10227, "donAcc_type": "standard", "distance": 3.351, "atom1_id": "///2/530/N3", "atom2_id": "///2/556/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1065, "atom1_serNum": 9690, "atom2_serNum": 9704, "donAcc_type": "acceptable", "distance": 2.391, "atom1_id": "///2/531/O2'", "atom2_id": "///2/532/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1066, "atom1_serNum": 9697, "atom2_serNum": 10211, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///2/531/N6", "atom2_id": "///2/556/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1067, "atom1_serNum": 9697, "atom2_serNum": 10213, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///2/531/N6", "atom2_id": "///2/556/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1068, "atom1_serNum": 9697, "atom2_serNum": 10216, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///2/531/N6", "atom2_id": "///2/556/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1069, "atom1_serNum": 9712, "atom2_serNum": 9736, "donAcc_type": "acceptable", "distance": 2.591, "atom1_id": "///2/532/O2'", "atom2_id": "///2/533/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1070, "atom1_serNum": 9716, "atom2_serNum": 9739, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///2/532/O2", "atom2_id": "///2/533/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1071, "atom1_serNum": 9716, "atom2_serNum": 10143, "donAcc_type": "standard", "distance": 2.655, "atom1_id": "///2/532/O2", "atom2_id": "///2/552/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1072, "atom1_serNum": 9717, "atom2_serNum": 9739, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///2/532/N3", "atom2_id": "///2/533/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1073, "atom1_serNum": 9717, "atom2_serNum": 10141, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///2/532/N3", "atom2_id": "///2/552/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1074, "atom1_serNum": 9719, "atom2_serNum": 10140, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///2/532/N4", "atom2_id": "///2/552/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1075, "atom1_serNum": 9739, "atom2_serNum": 10120, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///2/533/N6", "atom2_id": "///2/551/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1076, "atom1_serNum": 9740, "atom2_serNum": 10118, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///2/533/N1", "atom2_id": "///2/551/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1077, "atom1_serNum": 9754, "atom2_serNum": 9773, "donAcc_type": "acceptable", "distance": 2.840, "atom1_id": "///2/534/O2'", "atom2_id": "///2/535/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1078, "atom1_serNum": 9761, "atom2_serNum": 10100, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///2/534/O6", "atom2_id": "///2/550/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1079, "atom1_serNum": 9762, "atom2_serNum": 10098, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///2/534/N1", "atom2_id": "///2/550/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1080, "atom1_serNum": 9764, "atom2_serNum": 10097, "donAcc_type": "standard", "distance": 2.797, "atom1_id": "///2/534/N2", "atom2_id": "///2/550/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1081, "atom1_serNum": 9781, "atom2_serNum": 10040, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///2/535/N7", "atom2_id": "///2/547/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1082, "atom1_serNum": 9784, "atom2_serNum": 10040, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///2/535/O6", "atom2_id": "///2/547/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1083, "atom1_serNum": 9785, "atom2_serNum": 10080, "donAcc_type": "questionable", "distance": 2.947, "atom1_id": "///2/535/N1", "atom2_id": "///2/549/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1084, "atom1_serNum": 9787, "atom2_serNum": 10078, "donAcc_type": "standard", "distance": 3.668, "atom1_id": "///2/535/N2", "atom2_id": "///2/549/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1085, "atom1_serNum": 9807, "atom2_serNum": 10030, "donAcc_type": "acceptable", "distance": 3.707, "atom1_id": "///2/536/N6", "atom2_id": "///2/547/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1086, "atom1_serNum": 9826, "atom2_serNum": 10017, "donAcc_type": "standard", "distance": 2.689, "atom1_id": "///2/537/O2", "atom2_id": "///2/546/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1087, "atom1_serNum": 9827, "atom2_serNum": 10015, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///2/537/N3", "atom2_id": "///2/546/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1088, "atom1_serNum": 9829, "atom2_serNum": 10014, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///2/537/N4", "atom2_id": "///2/546/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1089, "atom1_serNum": 9847, "atom2_serNum": 9993, "donAcc_type": "standard", "distance": 2.651, "atom1_id": "///2/538/N3", "atom2_id": "///2/545/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1090, "atom1_serNum": 9849, "atom2_serNum": 9992, "donAcc_type": "standard", "distance": 2.616, "atom1_id": "///2/538/O4", "atom2_id": "///2/545/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1091, "atom1_serNum": 9866, "atom2_serNum": 9972, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///2/539/O2", "atom2_id": "///2/544/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1092, "atom1_serNum": 9867, "atom2_serNum": 9970, "donAcc_type": "standard", "distance": 2.658, "atom1_id": "///2/539/N3", "atom2_id": "///2/544/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1093, "atom1_serNum": 9869, "atom2_serNum": 9969, "donAcc_type": "standard", "distance": 2.371, "atom1_id": "///2/539/N4", "atom2_id": "///2/544/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1094, "atom1_serNum": 9874, "atom2_serNum": 9913, "donAcc_type": "questionable", "distance": 2.947, "atom1_id": "///2/540/OP2", "atom2_id": "///2/542/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1095, "atom1_serNum": 9886, "atom2_serNum": 9949, "donAcc_type": "standard", "distance": 3.170, "atom1_id": "///2/540/O2", "atom2_id": "///2/543/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1096, "atom1_serNum": 9889, "atom2_serNum": 9934, "donAcc_type": "questionable", "distance": 3.190, "atom1_id": "///2/540/O4", "atom2_id": "///2/543/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1097, "atom1_serNum": 9999, "atom2_serNum": 10034, "donAcc_type": "questionable", "distance": 3.073, "atom1_id": "///2/546/OP2", "atom2_id": "///2/547/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1098, "atom1_serNum": 10030, "atom2_serNum": 10080, "donAcc_type": "acceptable", "distance": 3.995, "atom1_id": "///2/547/O2'", "atom2_id": "///2/549/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1099, "atom1_serNum": 10045, "atom2_serNum": 10100, "donAcc_type": "standard", "distance": 3.833, "atom1_id": "///2/548/OP2", "atom2_id": "///2/550/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1100, "atom1_serNum": 10093, "atom2_serNum": 10097, "donAcc_type": "acceptable", "distance": 2.622, "atom1_id": "///2/550/O2'", "atom2_id": "///2/550/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1101, "atom1_serNum": 10205, "atom2_serNum": 10929, "donAcc_type": "standard", "distance": 2.528, "atom1_id": "///2/555/N6", "atom2_id": "///2/589/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1102, "atom1_serNum": 10240, "atom2_serNum": 10256, "donAcc_type": "acceptable", "distance": 2.898, "atom1_id": "///2/557/O2'", "atom2_id": "///2/558/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1103, "atom1_serNum": 10260, "atom2_serNum": 10276, "donAcc_type": "acceptable", "distance": 3.029, "atom1_id": "///2/558/O2'", "atom2_id": "///2/559/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1104, "atom1_serNum": 10260, "atom2_serNum": 10279, "donAcc_type": "acceptable", "distance": 3.131, "atom1_id": "///2/558/O2'", "atom2_id": "///2/559/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1105, "atom1_serNum": 10298, "atom2_serNum": 53314, "donAcc_type": "standard", "distance": 2.309, "atom1_id": "///2/560/OP2", "atom2_id": "///K/177/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1106, "atom1_serNum": 10299, "atom2_serNum": 53286, "donAcc_type": "standard", "distance": 2.835, "atom1_id": "///2/560/O5'", "atom2_id": "///K/174/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1107, "atom1_serNum": 10313, "atom2_serNum": 10902, "donAcc_type": "standard", "distance": 3.340, "atom1_id": "///2/560/N6", "atom2_id": "///2/588/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1108, "atom1_serNum": 10319, "atom2_serNum": 53256, "donAcc_type": "standard", "distance": 2.777, "atom1_id": "///2/561/OP1", "atom2_id": "///K/171/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1109, "atom1_serNum": 10320, "atom2_serNum": 53271, "donAcc_type": "standard", "distance": 3.328, "atom1_id": "///2/561/OP2", "atom2_id": "///K/173/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1110, "atom1_serNum": 10320, "atom2_serNum": 53278, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///2/561/OP2", "atom2_id": "///K/174/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1111, "atom1_serNum": 10328, "atom2_serNum": 10341, "donAcc_type": "acceptable", "distance": 2.306, "atom1_id": "///2/561/O2'", "atom2_id": "///2/562/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1112, "atom1_serNum": 10328, "atom2_serNum": 52941, "donAcc_type": "acceptable", "distance": 2.734, "atom1_id": "///2/561/O2'", "atom2_id": "///K/132/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1113, "atom1_serNum": 10328, "atom2_serNum": 52942, "donAcc_type": "acceptable", "distance": 2.458, "atom1_id": "///2/561/O2'", "atom2_id": "///K/132/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1114, "atom1_serNum": 10335, "atom2_serNum": 10945, "donAcc_type": "standard", "distance": 3.444, "atom1_id": "///2/561/N6", "atom2_id": "///2/590/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1115, "atom1_serNum": 10336, "atom2_serNum": 10948, "donAcc_type": "standard", "distance": 3.580, "atom1_id": "///2/561/N1", "atom2_id": "///2/590/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1116, "atom1_serNum": 10341, "atom2_serNum": 52942, "donAcc_type": "standard", "distance": 2.546, "atom1_id": "///2/562/OP1", "atom2_id": "///K/132/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1117, "atom1_serNum": 10341, "atom2_serNum": 52960, "donAcc_type": "acceptable", "distance": 3.288, "atom1_id": "///2/562/OP1", "atom2_id": "///K/134/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1118, "atom1_serNum": 10350, "atom2_serNum": 52937, "donAcc_type": "acceptable", "distance": 3.811, "atom1_id": "///2/562/O2'", "atom2_id": "///K/132/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1119, "atom1_serNum": 10354, "atom2_serNum": 10880, "donAcc_type": "standard", "distance": 3.651, "atom1_id": "///2/562/O2", "atom2_id": "///2/587/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1120, "atom1_serNum": 10357, "atom2_serNum": 10877, "donAcc_type": "questionable", "distance": 2.866, "atom1_id": "///2/562/O4", "atom2_id": "///2/587/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1121, "atom1_serNum": 10377, "atom2_serNum": 10990, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///2/563/O6", "atom2_id": "///2/592/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1122, "atom1_serNum": 10377, "atom2_serNum": 53269, "donAcc_type": "standard", "distance": 3.592, "atom1_id": "///2/563/O6", "atom2_id": "///K/172/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1123, "atom1_serNum": 10378, "atom2_serNum": 10988, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///2/563/N1", "atom2_id": "///2/592/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1124, "atom1_serNum": 10380, "atom2_serNum": 10987, "donAcc_type": "standard", "distance": 2.702, "atom1_id": "///2/563/N2", "atom2_id": "///2/592/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1125, "atom1_serNum": 10397, "atom2_serNum": 10860, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///2/564/N7", "atom2_id": "///2/586/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1126, "atom1_serNum": 10400, "atom2_serNum": 10861, "donAcc_type": "standard", "distance": 2.678, "atom1_id": "///2/564/N6", "atom2_id": "///2/586/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1127, "atom1_serNum": 10415, "atom2_serNum": 10434, "donAcc_type": "acceptable", "distance": 3.288, "atom1_id": "///2/565/O2'", "atom2_id": "///2/566/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1128, "atom1_serNum": 10422, "atom2_serNum": 10837, "donAcc_type": "standard", "distance": 2.543, "atom1_id": "///2/565/O6", "atom2_id": "///2/585/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1129, "atom1_serNum": 10423, "atom2_serNum": 10835, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///2/565/N1", "atom2_id": "///2/585/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1130, "atom1_serNum": 10425, "atom2_serNum": 10834, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///2/565/N2", "atom2_id": "///2/585/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1131, "atom1_serNum": 10443, "atom2_serNum": 10816, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///2/566/N3", "atom2_id": "///2/584/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1132, "atom1_serNum": 10445, "atom2_serNum": 10815, "donAcc_type": "standard", "distance": 3.146, "atom1_id": "///2/566/O4", "atom2_id": "///2/584/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1133, "atom1_serNum": 10462, "atom2_serNum": 10793, "donAcc_type": "standard", "distance": 2.383, "atom1_id": "///2/567/O2", "atom2_id": "///2/583/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1134, "atom1_serNum": 10485, "atom2_serNum": 10770, "donAcc_type": "standard", "distance": 2.575, "atom1_id": "///2/568/N4", "atom2_id": "///2/582/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1135, "atom1_serNum": 10505, "atom2_serNum": 10753, "donAcc_type": "standard", "distance": 3.011, "atom1_id": "///2/569/N6", "atom2_id": "///2/581/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1136, "atom1_serNum": 10506, "atom2_serNum": 10751, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///2/569/N1", "atom2_id": "///2/581/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1137, "atom1_serNum": 10520, "atom2_serNum": 67804, "donAcc_type": "acceptable", "distance": 2.478, "atom1_id": "///2/570/O2'", "atom2_id": "///Z/34/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1138, "atom1_serNum": 10527, "atom2_serNum": 10733, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///2/570/N4", "atom2_id": "///2/580/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1139, "atom1_serNum": 10531, "atom2_serNum": 67822, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///2/571/OP1", "atom2_id": "///Z/37/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1140, "atom1_serNum": 10540, "atom2_serNum": 68015, "donAcc_type": "acceptable", "distance": 2.397, "atom1_id": "///2/571/O2'", "atom2_id": "///Z/60/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1141, "atom1_serNum": 10544, "atom2_serNum": 10713, "donAcc_type": "standard", "distance": 3.293, "atom1_id": "///2/571/O2", "atom2_id": "///2/579/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1142, "atom1_serNum": 10551, "atom2_serNum": 68012, "donAcc_type": "standard", "distance": 3.448, "atom1_id": "///2/572/OP1", "atom2_id": "///Z/60/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1143, "atom1_serNum": 10552, "atom2_serNum": 67830, "donAcc_type": "standard", "distance": 3.356, "atom1_id": "///2/572/OP2", "atom2_id": "///Z/37/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1144, "atom1_serNum": 10572, "atom2_serNum": 68008, "donAcc_type": "standard", "distance": 3.941, "atom1_id": "///2/573/OP2", "atom2_id": "///Z/59/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1145, "atom1_serNum": 10572, "atom2_serNum": 68285, "donAcc_type": "standard", "distance": 3.761, "atom1_id": "///2/573/OP2", "atom2_id": "///Z/93/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1146, "atom1_serNum": 10585, "atom2_serNum": 10636, "donAcc_type": "standard", "distance": 2.335, "atom1_id": "///2/573/N3", "atom2_id": "///2/576/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1147, "atom1_serNum": 10613, "atom2_serNum": 68283, "donAcc_type": "standard", "distance": 2.619, "atom1_id": "///2/575/OP1", "atom2_id": "///Z/93/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1148, "atom1_serNum": 10613, "atom2_serNum": 68286, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///2/575/OP1", "atom2_id": "///Z/93/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1149, "atom1_serNum": 10614, "atom2_serNum": 68286, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///2/575/OP2", "atom2_id": "///Z/93/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1150, "atom1_serNum": 10710, "atom2_serNum": 68033, "donAcc_type": "standard", "distance": 3.696, "atom1_id": "///2/579/O2", "atom2_id": "///Z/61/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1151, "atom1_serNum": 10730, "atom2_serNum": 68039, "donAcc_type": "acceptable", "distance": 3.386, "atom1_id": "///2/580/O2", "atom2_id": "///Z/62/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1152, "atom1_serNum": 10737, "atom2_serNum": 52953, "donAcc_type": "standard", "distance": 2.283, "atom1_id": "///2/581/OP1", "atom2_id": "///K/133/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1153, "atom1_serNum": 10746, "atom2_serNum": 67790, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///2/581/O2'", "atom2_id": "///Z/32/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1154, "atom1_serNum": 10750, "atom2_serNum": 67801, "donAcc_type": "standard", "distance": 3.715, "atom1_id": "///2/581/O2", "atom2_id": "///Z/34/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1155, "atom1_serNum": 10777, "atom2_serNum": 53200, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///2/583/OP1", "atom2_id": "///K/162/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1156, "atom1_serNum": 10799, "atom2_serNum": 53248, "donAcc_type": "standard", "distance": 2.695, "atom1_id": "///2/584/OP1", "atom2_id": "///K/169/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1157, "atom1_serNum": 10858, "atom2_serNum": 53269, "donAcc_type": "questionable", "distance": 3.176, "atom1_id": "///2/586/N1", "atom2_id": "///K/172/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1158, "atom1_serNum": 10891, "atom2_serNum": 10937, "donAcc_type": "questionable", "distance": 2.943, "atom1_id": "///2/588/O4'", "atom2_id": "///2/590/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1159, "atom1_serNum": 10918, "atom2_serNum": 10932, "donAcc_type": "acceptable", "distance": 2.975, "atom1_id": "///2/589/O2'", "atom2_id": "///2/590/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1160, "atom1_serNum": 10925, "atom2_serNum": 10963, "donAcc_type": "acceptable", "distance": 3.614, "atom1_id": "///2/589/O6", "atom2_id": "///2/591/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1161, "atom1_serNum": 10955, "atom2_serNum": 10983, "donAcc_type": "acceptable", "distance": 3.132, "atom1_id": "///2/591/OP2", "atom2_id": "///2/592/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1162, "atom1_serNum": 10983, "atom2_serNum": 10987, "donAcc_type": "acceptable", "distance": 2.942, "atom1_id": "///2/592/O2'", "atom2_id": "///2/592/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1163, "atom1_serNum": 11019, "atom2_serNum": 12077, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///2/594/O4'", "atom2_id": "///2/643/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1164, "atom1_serNum": 11030, "atom2_serNum": 12063, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///2/594/N6", "atom2_id": "///2/643/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1165, "atom1_serNum": 11031, "atom2_serNum": 12050, "donAcc_type": "acceptable", "distance": 3.123, "atom1_id": "///2/594/N1", "atom2_id": "///2/642/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1166, "atom1_serNum": 11052, "atom2_serNum": 12054, "donAcc_type": "questionable", "distance": 2.904, "atom1_id": "///2/595/O4", "atom2_id": "///2/642/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1167, "atom1_serNum": 11056, "atom2_serNum": 67505, "donAcc_type": "standard", "distance": 3.581, "atom1_id": "///2/596/OP1", "atom2_id": "///Y/137/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1168, "atom1_serNum": 11061, "atom2_serNum": 12102, "donAcc_type": "standard", "distance": 3.688, "atom1_id": "///2/596/O4'", "atom2_id": "///2/644/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1169, "atom1_serNum": 11065, "atom2_serNum": 11078, "donAcc_type": "acceptable", "distance": 3.065, "atom1_id": "///2/596/O2'", "atom2_id": "///2/597/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1170, "atom1_serNum": 11065, "atom2_serNum": 12115, "donAcc_type": "acceptable", "distance": 2.834, "atom1_id": "///2/596/O2'", "atom2_id": "///2/645/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1171, "atom1_serNum": 11065, "atom2_serNum": 12131, "donAcc_type": "acceptable", "distance": 3.475, "atom1_id": "///2/596/O2'", "atom2_id": "///2/646/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1172, "atom1_serNum": 11069, "atom2_serNum": 12115, "donAcc_type": "acceptable", "distance": 3.309, "atom1_id": "///2/596/O2", "atom2_id": "///2/645/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1173, "atom1_serNum": 11070, "atom2_serNum": 12014, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///2/596/N3", "atom2_id": "///2/640/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1174, "atom1_serNum": 11070, "atom2_serNum": 12036, "donAcc_type": "standard", "distance": 2.809, "atom1_id": "///2/596/N3", "atom2_id": "///2/641/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1175, "atom1_serNum": 11072, "atom2_serNum": 12013, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///2/596/O4", "atom2_id": "///2/640/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1176, "atom1_serNum": 11092, "atom2_serNum": 11993, "donAcc_type": "standard", "distance": 3.933, "atom1_id": "///2/597/O6", "atom2_id": "///2/639/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1177, "atom1_serNum": 11093, "atom2_serNum": 11991, "donAcc_type": "standard", "distance": 3.883, "atom1_id": "///2/597/N1", "atom2_id": "///2/639/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1178, "atom1_serNum": 11095, "atom2_serNum": 11250, "donAcc_type": "standard", "distance": 4.000, "atom1_id": "///2/597/N2", "atom2_id": "///2/604/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1179, "atom1_serNum": 11095, "atom2_serNum": 11990, "donAcc_type": "standard", "distance": 3.793, "atom1_id": "///2/597/N2", "atom2_id": "///2/639/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1180, "atom1_serNum": 11108, "atom2_serNum": 11249, "donAcc_type": "acceptable", "distance": 3.198, "atom1_id": "///2/598/O2'", "atom2_id": "///2/604/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1181, "atom1_serNum": 11108, "atom2_serNum": 11272, "donAcc_type": "acceptable", "distance": 2.485, "atom1_id": "///2/598/O2'", "atom2_id": "///2/605/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1182, "atom1_serNum": 11115, "atom2_serNum": 11973, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///2/598/O6", "atom2_id": "///2/638/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1183, "atom1_serNum": 11116, "atom2_serNum": 11971, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///2/598/N1", "atom2_id": "///2/638/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1184, "atom1_serNum": 11118, "atom2_serNum": 11274, "donAcc_type": "standard", "distance": 3.045, "atom1_id": "///2/598/N2", "atom2_id": "///2/605/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1185, "atom1_serNum": 11118, "atom2_serNum": 11970, "donAcc_type": "standard", "distance": 2.536, "atom1_id": "///2/598/N2", "atom2_id": "///2/638/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1186, "atom1_serNum": 11138, "atom2_serNum": 11953, "donAcc_type": "standard", "distance": 3.423, "atom1_id": "///2/599/N6", "atom2_id": "///2/637/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1187, "atom1_serNum": 11139, "atom2_serNum": 11951, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///2/599/N1", "atom2_id": "///2/637/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1188, "atom1_serNum": 11145, "atom2_serNum": 11296, "donAcc_type": "standard", "distance": 3.583, "atom1_id": "///2/600/OP2", "atom2_id": "///2/606/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1189, "atom1_serNum": 11145, "atom2_serNum": 11801, "donAcc_type": "acceptable", "distance": 2.979, "atom1_id": "///2/600/OP2", "atom2_id": "///2/630/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1190, "atom1_serNum": 11160, "atom2_serNum": 11635, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///2/600/O6", "atom2_id": "///2/622/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1191, "atom1_serNum": 11161, "atom2_serNum": 11633, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///2/600/N1", "atom2_id": "///2/622/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1192, "atom1_serNum": 11163, "atom2_serNum": 11632, "donAcc_type": "standard", "distance": 2.791, "atom1_id": "///2/600/N2", "atom2_id": "///2/622/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1193, "atom1_serNum": 11183, "atom2_serNum": 11615, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///2/601/O6", "atom2_id": "///2/621/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1194, "atom1_serNum": 11184, "atom2_serNum": 11613, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///2/601/N1", "atom2_id": "///2/621/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1195, "atom1_serNum": 11186, "atom2_serNum": 11612, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///2/601/N2", "atom2_id": "///2/621/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1196, "atom1_serNum": 11190, "atom2_serNum": 11234, "donAcc_type": "questionable", "distance": 3.281, "atom1_id": "///2/602/OP1", "atom2_id": "///2/604/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1197, "atom1_serNum": 11191, "atom2_serNum": 11222, "donAcc_type": "acceptable", "distance": 2.251, "atom1_id": "///2/602/OP2", "atom2_id": "///2/603/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1198, "atom1_serNum": 11209, "atom2_serNum": 11589, "donAcc_type": "standard", "distance": 3.084, "atom1_id": "///2/602/N2", "atom2_id": "///2/620/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1199, "atom1_serNum": 11226, "atom2_serNum": 11246, "donAcc_type": "questionable", "distance": 2.952, "atom1_id": "///2/603/O2", "atom2_id": "///2/604/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1200, "atom1_serNum": 11226, "atom2_serNum": 11271, "donAcc_type": "standard", "distance": 3.460, "atom1_id": "///2/603/O2", "atom2_id": "///2/605/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1201, "atom1_serNum": 11229, "atom2_serNum": 11592, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///2/603/N4", "atom2_id": "///2/620/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1202, "atom1_serNum": 11252, "atom2_serNum": 11986, "donAcc_type": "acceptable", "distance": 2.835, "atom1_id": "///2/604/N3", "atom2_id": "///2/639/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1203, "atom1_serNum": 11260, "atom2_serNum": 11982, "donAcc_type": "questionable", "distance": 3.164, "atom1_id": "///2/605/O4'", "atom2_id": "///2/639/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1204, "atom1_serNum": 11264, "atom2_serNum": 11966, "donAcc_type": "acceptable", "distance": 2.564, "atom1_id": "///2/605/O2'", "atom2_id": "///2/638/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1205, "atom1_serNum": 11277, "atom2_serNum": 72057, "donAcc_type": "standard", "distance": 3.563, "atom1_id": "///2/606/OP1", "atom2_id": "///f/127/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1206, "atom1_serNum": 11277, "atom2_serNum": 72068, "donAcc_type": "standard", "distance": 3.681, "atom1_id": "///2/606/OP1", "atom2_id": "///f/129/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1207, "atom1_serNum": 11293, "atom2_serNum": 11933, "donAcc_type": "standard", "distance": 2.696, "atom1_id": "///2/606/O6", "atom2_id": "///2/636/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1208, "atom1_serNum": 11309, "atom2_serNum": 11320, "donAcc_type": "acceptable", "distance": 2.536, "atom1_id": "///2/607/O2'", "atom2_id": "///2/608/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1209, "atom1_serNum": 11325, "atom2_serNum": 72088, "donAcc_type": "standard", "distance": 2.453, "atom1_id": "///2/608/O4'", "atom2_id": "///f/131/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1210, "atom1_serNum": 11333, "atom2_serNum": 11913, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///2/608/O2", "atom2_id": "///2/635/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1211, "atom1_serNum": 11334, "atom2_serNum": 11911, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///2/608/N3", "atom2_id": "///2/635/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1212, "atom1_serNum": 11336, "atom2_serNum": 11910, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/608/N4", "atom2_id": "///2/635/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1213, "atom1_serNum": 11354, "atom2_serNum": 11889, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///2/609/N3", "atom2_id": "///2/634/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1214, "atom1_serNum": 11356, "atom2_serNum": 11888, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///2/609/O4", "atom2_id": "///2/634/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1215, "atom1_serNum": 11376, "atom2_serNum": 11868, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///2/610/O6", "atom2_id": "///2/633/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1216, "atom1_serNum": 11377, "atom2_serNum": 11866, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/610/N1", "atom2_id": "///2/633/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1217, "atom1_serNum": 11379, "atom2_serNum": 11865, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///2/610/N2", "atom2_id": "///2/633/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1218, "atom1_serNum": 11392, "atom2_serNum": 11411, "donAcc_type": "acceptable", "distance": 3.393, "atom1_id": "///2/611/O2'", "atom2_id": "///2/612/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1219, "atom1_serNum": 11392, "atom2_serNum": 71728, "donAcc_type": "acceptable", "distance": 3.622, "atom1_id": "///2/611/O2'", "atom2_id": "///f/88/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1220, "atom1_serNum": 11399, "atom2_serNum": 11848, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/611/O6", "atom2_id": "///2/632/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1221, "atom1_serNum": 11400, "atom2_serNum": 11846, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/611/N1", "atom2_id": "///2/632/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1222, "atom1_serNum": 11402, "atom2_serNum": 11845, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///2/611/N2", "atom2_id": "///2/632/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1223, "atom1_serNum": 11415, "atom2_serNum": 71733, "donAcc_type": "acceptable", "distance": 2.978, "atom1_id": "///2/612/O2'", "atom2_id": "///f/88/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1224, "atom1_serNum": 11419, "atom2_serNum": 11485, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///2/612/O2", "atom2_id": "///2/615/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1225, "atom1_serNum": 11422, "atom2_serNum": 11783, "donAcc_type": "questionable", "distance": 2.911, "atom1_id": "///2/612/O4", "atom2_id": "///2/629/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1226, "atom1_serNum": 11443, "atom2_serNum": 11770, "donAcc_type": "standard", "distance": 2.619, "atom1_id": "///2/613/N1", "atom2_id": "///2/629/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1227, "atom1_serNum": 11445, "atom2_serNum": 11689, "donAcc_type": "standard", "distance": 3.127, "atom1_id": "///2/613/N2", "atom2_id": "///2/625/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1228, "atom1_serNum": 11445, "atom2_serNum": 11705, "donAcc_type": "standard", "distance": 2.412, "atom1_id": "///2/613/N2", "atom2_id": "///2/626/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1229, "atom1_serNum": 11445, "atom2_serNum": 11771, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///2/613/N2", "atom2_id": "///2/629/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1230, "atom1_serNum": 11458, "atom2_serNum": 11462, "donAcc_type": "acceptable", "distance": 2.974, "atom1_id": "///2/614/O2'", "atom2_id": "///2/614/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1231, "atom1_serNum": 11462, "atom2_serNum": 66943, "donAcc_type": "standard", "distance": 3.717, "atom1_id": "///2/614/O2", "atom2_id": "///Y/64/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1232, "atom1_serNum": 11485, "atom2_serNum": 11691, "donAcc_type": "acceptable", "distance": 3.639, "atom1_id": "///2/615/N4", "atom2_id": "///2/625/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1233, "atom1_serNum": 11489, "atom2_serNum": 66957, "donAcc_type": "questionable", "distance": 2.993, "atom1_id": "///2/616/OP1", "atom2_id": "///Y/66/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1234, "atom1_serNum": 11489, "atom2_serNum": 66981, "donAcc_type": "standard", "distance": 2.690, "atom1_id": "///2/616/OP1", "atom2_id": "///Y/68/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1235, "atom1_serNum": 11496, "atom2_serNum": 71690, "donAcc_type": "standard", "distance": 3.933, "atom1_id": "///2/616/O3'", "atom2_id": "///f/83/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1236, "atom1_serNum": 11498, "atom2_serNum": 67136, "donAcc_type": "acceptable", "distance": 3.200, "atom1_id": "///2/616/O2'", "atom2_id": "///Y/88/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1237, "atom1_serNum": 11498, "atom2_serNum": 71703, "donAcc_type": "acceptable", "distance": 3.728, "atom1_id": "///2/616/O2'", "atom2_id": "///f/85/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1238, "atom1_serNum": 11502, "atom2_serNum": 11701, "donAcc_type": "standard", "distance": 2.571, "atom1_id": "///2/616/N7", "atom2_id": "///2/625/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1239, "atom1_serNum": 11505, "atom2_serNum": 11702, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///2/616/N6", "atom2_id": "///2/625/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1240, "atom1_serNum": 11506, "atom2_serNum": 11786, "donAcc_type": "standard", "distance": 3.221, "atom1_id": "///2/616/N1", "atom2_id": "///2/629/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1241, "atom1_serNum": 11520, "atom2_serNum": 11841, "donAcc_type": "acceptable", "distance": 2.565, "atom1_id": "///2/617/O2'", "atom2_id": "///2/632/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1242, "atom1_serNum": 11524, "atom2_serNum": 66972, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///2/617/N7", "atom2_id": "///Y/67/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1243, "atom1_serNum": 11527, "atom2_serNum": 11678, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///2/617/O6", "atom2_id": "///2/624/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1244, "atom1_serNum": 11527, "atom2_serNum": 66972, "donAcc_type": "standard", "distance": 3.090, "atom1_id": "///2/617/O6", "atom2_id": "///Y/67/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1245, "atom1_serNum": 11528, "atom2_serNum": 11676, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/617/N1", "atom2_id": "///2/624/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1246, "atom1_serNum": 11530, "atom2_serNum": 11675, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///2/617/N2", "atom2_id": "///2/624/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1247, "atom1_serNum": 11530, "atom2_serNum": 11837, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///2/617/N2", "atom2_id": "///2/632/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1248, "atom1_serNum": 11543, "atom2_serNum": 11832, "donAcc_type": "acceptable", "distance": 3.299, "atom1_id": "///2/618/O2'", "atom2_id": "///2/632/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1249, "atom1_serNum": 11547, "atom2_serNum": 11658, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///2/618/O2", "atom2_id": "///2/623/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1250, "atom1_serNum": 11548, "atom2_serNum": 11656, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///2/618/N3", "atom2_id": "///2/623/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1251, "atom1_serNum": 11550, "atom2_serNum": 11655, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///2/618/N4", "atom2_id": "///2/623/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1252, "atom1_serNum": 11550, "atom2_serNum": 66972, "donAcc_type": "questionable", "distance": 2.992, "atom1_id": "///2/618/N4", "atom2_id": "///Y/67/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1253, "atom1_serNum": 11563, "atom2_serNum": 11635, "donAcc_type": "acceptable", "distance": 3.582, "atom1_id": "///2/619/O2'", "atom2_id": "///2/622/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1254, "atom1_serNum": 11570, "atom2_serNum": 67328, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/619/N6", "atom2_id": "///Y/114/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1255, "atom1_serNum": 11595, "atom2_serNum": 12149, "donAcc_type": "standard", "distance": 3.301, "atom1_id": "///2/620/N2", "atom2_id": "///2/647/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1256, "atom1_serNum": 11599, "atom2_serNum": 67281, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///2/621/OP1", "atom2_id": "///Y/107/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1257, "atom1_serNum": 11599, "atom2_serNum": 67318, "donAcc_type": "standard", "distance": 3.594, "atom1_id": "///2/621/OP1", "atom2_id": "///Y/113/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1258, "atom1_serNum": 11655, "atom2_serNum": 66942, "donAcc_type": "standard", "distance": 2.500, "atom1_id": "///2/623/O6", "atom2_id": "///Y/63/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1259, "atom1_serNum": 11658, "atom2_serNum": 11825, "donAcc_type": "standard", "distance": 3.611, "atom1_id": "///2/623/N2", "atom2_id": "///2/631/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1260, "atom1_serNum": 11671, "atom2_serNum": 11789, "donAcc_type": "acceptable", "distance": 3.968, "atom1_id": "///2/624/O2'", "atom2_id": "///2/629/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1261, "atom1_serNum": 11675, "atom2_serNum": 11821, "donAcc_type": "acceptable", "distance": 3.350, "atom1_id": "///2/624/O2", "atom2_id": "///2/631/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1262, "atom1_serNum": 11678, "atom2_serNum": 66941, "donAcc_type": "standard", "distance": 2.348, "atom1_id": "///2/624/N4", "atom2_id": "///Y/63/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1263, "atom1_serNum": 11714, "atom2_serNum": 11728, "donAcc_type": "acceptable", "distance": 2.621, "atom1_id": "///2/626/O2'", "atom2_id": "///2/627/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1264, "atom1_serNum": 11779, "atom2_serNum": 11813, "donAcc_type": "acceptable", "distance": 2.769, "atom1_id": "///2/629/O2'", "atom2_id": "///2/631/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1265, "atom1_serNum": 11812, "atom2_serNum": 11848, "donAcc_type": "standard", "distance": 3.487, "atom1_id": "///2/631/OP1", "atom2_id": "///2/632/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1266, "atom1_serNum": 11859, "atom2_serNum": 71719, "donAcc_type": "standard", "distance": 3.370, "atom1_id": "///2/633/O3'", "atom2_id": "///f/86/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1267, "atom1_serNum": 11861, "atom2_serNum": 71739, "donAcc_type": "acceptable", "distance": 3.520, "atom1_id": "///2/633/O2'", "atom2_id": "///f/89/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1268, "atom1_serNum": 11872, "atom2_serNum": 71719, "donAcc_type": "standard", "distance": 2.429, "atom1_id": "///2/634/OP1", "atom2_id": "///f/86/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1269, "atom1_serNum": 11881, "atom2_serNum": 71744, "donAcc_type": "acceptable", "distance": 3.901, "atom1_id": "///2/634/O2'", "atom2_id": "///f/90/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1270, "atom1_serNum": 11917, "atom2_serNum": 71779, "donAcc_type": "standard", "distance": 3.674, "atom1_id": "///2/636/OP1", "atom2_id": "///f/95/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1271, "atom1_serNum": 11946, "atom2_serNum": 72074, "donAcc_type": "acceptable", "distance": 3.123, "atom1_id": "///2/637/O2'", "atom2_id": "///f/129/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1272, "atom1_serNum": 11950, "atom2_serNum": 72075, "donAcc_type": "standard", "distance": 3.083, "atom1_id": "///2/637/O2", "atom2_id": "///f/129/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1273, "atom1_serNum": 11957, "atom2_serNum": 71948, "donAcc_type": "standard", "distance": 3.662, "atom1_id": "///2/638/OP1", "atom2_id": "///f/113/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1274, "atom1_serNum": 11966, "atom2_serNum": 11982, "donAcc_type": "acceptable", "distance": 3.239, "atom1_id": "///2/638/O2'", "atom2_id": "///2/639/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1275, "atom1_serNum": 11993, "atom2_serNum": 12013, "donAcc_type": "questionable", "distance": 3.056, "atom1_id": "///2/639/N4", "atom2_id": "///2/640/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1276, "atom1_serNum": 12006, "atom2_serNum": 12024, "donAcc_type": "acceptable", "distance": 3.062, "atom1_id": "///2/640/O2'", "atom2_id": "///2/641/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1277, "atom1_serNum": 12028, "atom2_serNum": 12106, "donAcc_type": "acceptable", "distance": 2.923, "atom1_id": "///2/641/O2'", "atom2_id": "///2/645/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1278, "atom1_serNum": 12041, "atom2_serNum": 52163, "donAcc_type": "standard", "distance": 3.065, "atom1_id": "///2/642/OP1", "atom2_id": "///K/39/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1279, "atom1_serNum": 12041, "atom2_serNum": 52173, "donAcc_type": "standard", "distance": 3.287, "atom1_id": "///2/642/OP1", "atom2_id": "///K/41/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1280, "atom1_serNum": 12042, "atom2_serNum": 52164, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///2/642/OP2", "atom2_id": "///K/40/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1281, "atom1_serNum": 12050, "atom2_serNum": 12088, "donAcc_type": "acceptable", "distance": 3.533, "atom1_id": "///2/642/O2'", "atom2_id": "///2/644/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1282, "atom1_serNum": 12057, "atom2_serNum": 71879, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///2/642/O4", "atom2_id": "///f/106/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1283, "atom1_serNum": 12061, "atom2_serNum": 52154, "donAcc_type": "standard", "distance": 2.548, "atom1_id": "///2/643/OP1", "atom2_id": "///K/38/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1284, "atom1_serNum": 12062, "atom2_serNum": 52154, "donAcc_type": "standard", "distance": 3.242, "atom1_id": "///2/643/OP2", "atom2_id": "///K/38/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1285, "atom1_serNum": 12083, "atom2_serNum": 52183, "donAcc_type": "standard", "distance": 3.649, "atom1_id": "///2/644/OP1", "atom2_id": "///K/41/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1286, "atom1_serNum": 12115, "atom2_serNum": 12131, "donAcc_type": "acceptable", "distance": 3.171, "atom1_id": "///2/645/O2'", "atom2_id": "///2/646/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1287, "atom1_serNum": 12158, "atom2_serNum": 67386, "donAcc_type": "acceptable", "distance": 3.131, "atom1_id": "///2/647/O2'", "atom2_id": "///Y/121/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1288, "atom1_serNum": 12178, "atom2_serNum": 66806, "donAcc_type": "acceptable", "distance": 3.589, "atom1_id": "///2/648/O2'", "atom2_id": "///Y/45/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1289, "atom1_serNum": 12191, "atom2_serNum": 67283, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///2/649/OP1", "atom2_id": "///Y/108/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1290, "atom1_serNum": 12192, "atom2_serNum": 67291, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/649/OP2", "atom2_id": "///Y/108/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1291, "atom1_serNum": 12200, "atom2_serNum": 66808, "donAcc_type": "acceptable", "distance": 3.166, "atom1_id": "///2/649/O2'", "atom2_id": "///Y/45/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1292, "atom1_serNum": 12207, "atom2_serNum": 12227, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/649/O4", "atom2_id": "///2/650/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1293, "atom1_serNum": 12242, "atom2_serNum": 12258, "donAcc_type": "acceptable", "distance": 3.177, "atom1_id": "///2/651/O2'", "atom2_id": "///2/652/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1294, "atom1_serNum": 12295, "atom2_serNum": 12339, "donAcc_type": "questionable", "distance": 2.873, "atom1_id": "///2/654/OP1", "atom2_id": "///2/656/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1295, "atom1_serNum": 12296, "atom2_serNum": 12326, "donAcc_type": "acceptable", "distance": 2.531, "atom1_id": "///2/654/OP2", "atom2_id": "///2/655/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1296, "atom1_serNum": 12355, "atom2_serNum": 21401, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///2/656/O6", "atom2_id": "///2/1156/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1297, "atom1_serNum": 12356, "atom2_serNum": 21400, "donAcc_type": "standard", "distance": 3.084, "atom1_id": "///2/656/N1", "atom2_id": "///2/1156/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1298, "atom1_serNum": 12395, "atom2_serNum": 66584, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/658/O2", "atom2_id": "///Y/17/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1299, "atom1_serNum": 12396, "atom2_serNum": 66608, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///2/658/N3", "atom2_id": "///Y/20/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1300, "atom1_serNum": 12398, "atom2_serNum": 21588, "donAcc_type": "acceptable", "distance": 2.931, "atom1_id": "///2/658/O4", "atom2_id": "///2/1165/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1301, "atom1_serNum": 12407, "atom2_serNum": 12485, "donAcc_type": "questionable", "distance": 3.090, "atom1_id": "///2/659/O4'", "atom2_id": "///2/662/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1302, "atom1_serNum": 12411, "atom2_serNum": 12446, "donAcc_type": "acceptable", "distance": 3.599, "atom1_id": "///2/659/O2'", "atom2_id": "///2/661/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1303, "atom1_serNum": 12411, "atom2_serNum": 12472, "donAcc_type": "acceptable", "distance": 2.326, "atom1_id": "///2/659/O2'", "atom2_id": "///2/662/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1304, "atom1_serNum": 12411, "atom2_serNum": 12474, "donAcc_type": "acceptable", "distance": 2.403, "atom1_id": "///2/659/O2'", "atom2_id": "///2/662/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1305, "atom1_serNum": 12411, "atom2_serNum": 12489, "donAcc_type": "acceptable", "distance": 3.224, "atom1_id": "///2/659/O2'", "atom2_id": "///2/663/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1306, "atom1_serNum": 12418, "atom2_serNum": 21592, "donAcc_type": "questionable", "distance": 2.932, "atom1_id": "///2/659/O6", "atom2_id": "///2/1165/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1307, "atom1_serNum": 12419, "atom2_serNum": 21595, "donAcc_type": "standard", "distance": 3.359, "atom1_id": "///2/659/N1", "atom2_id": "///2/1165/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1308, "atom1_serNum": 12421, "atom2_serNum": 66585, "donAcc_type": "questionable", "distance": 3.086, "atom1_id": "///2/659/N2", "atom2_id": "///Y/17/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1309, "atom1_serNum": 12425, "atom2_serNum": 66585, "donAcc_type": "standard", "distance": 2.650, "atom1_id": "///2/660/OP1", "atom2_id": "///Y/17/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1310, "atom1_serNum": 12426, "atom2_serNum": 66585, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///2/660/OP2", "atom2_id": "///Y/17/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1311, "atom1_serNum": 12445, "atom2_serNum": 66484, "donAcc_type": "standard", "distance": 3.625, "atom1_id": "///2/661/OP1", "atom2_id": "///Y/5/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1312, "atom1_serNum": 12446, "atom2_serNum": 12474, "donAcc_type": "acceptable", "distance": 2.484, "atom1_id": "///2/661/OP2", "atom2_id": "///2/662/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1313, "atom1_serNum": 12454, "atom2_serNum": 66150, "donAcc_type": "acceptable", "distance": 3.629, "atom1_id": "///2/661/O2'", "atom2_id": "///X/92/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1314, "atom1_serNum": 12466, "atom2_serNum": 21396, "donAcc_type": "acceptable", "distance": 2.928, "atom1_id": "///2/662/OP2", "atom2_id": "///2/1156/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1315, "atom1_serNum": 12489, "atom2_serNum": 66455, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///2/663/OP2", "atom2_id": "///Y/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1316, "atom1_serNum": 12501, "atom2_serNum": 21575, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///2/663/O2", "atom2_id": "///2/1164/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1317, "atom1_serNum": 12502, "atom2_serNum": 21573, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///2/663/N3", "atom2_id": "///2/1164/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1318, "atom1_serNum": 12504, "atom2_serNum": 21572, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///2/663/N4", "atom2_id": "///2/1164/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1319, "atom1_serNum": 12517, "atom2_serNum": 12654, "donAcc_type": "acceptable", "distance": 3.218, "atom1_id": "///2/664/O2'", "atom2_id": "///2/670/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1320, "atom1_serNum": 12524, "atom2_serNum": 21550, "donAcc_type": "standard", "distance": 3.302, "atom1_id": "///2/664/N6", "atom2_id": "///2/1163/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1321, "atom1_serNum": 12525, "atom2_serNum": 21549, "donAcc_type": "questionable", "distance": 2.844, "atom1_id": "///2/664/N1", "atom2_id": "///2/1163/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1322, "atom1_serNum": 12546, "atom2_serNum": 21532, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///2/665/O6", "atom2_id": "///2/1162/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1323, "atom1_serNum": 12547, "atom2_serNum": 21530, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///2/665/N1", "atom2_id": "///2/1162/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1324, "atom1_serNum": 12549, "atom2_serNum": 21529, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///2/665/N2", "atom2_id": "///2/1162/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1325, "atom1_serNum": 12560, "atom2_serNum": 19927, "donAcc_type": "acceptable", "distance": 2.647, "atom1_id": "///2/666/O3'", "atom2_id": "///2/1087/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1326, "atom1_serNum": 12567, "atom2_serNum": 21173, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/666/N3", "atom2_id": "///2/1145/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1327, "atom1_serNum": 12569, "atom2_serNum": 21172, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///2/666/O4", "atom2_id": "///2/1145/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1328, "atom1_serNum": 12582, "atom2_serNum": 22304, "donAcc_type": "acceptable", "distance": 3.395, "atom1_id": "///2/667/O2'", "atom2_id": "///2/1198/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1329, "atom1_serNum": 12587, "atom2_serNum": 21151, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///2/667/N3", "atom2_id": "///2/1144/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1330, "atom1_serNum": 12589, "atom2_serNum": 21150, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///2/667/O4", "atom2_id": "///2/1144/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1331, "atom1_serNum": 12598, "atom2_serNum": 22302, "donAcc_type": "questionable", "distance": 2.794, "atom1_id": "///2/668/O4'", "atom2_id": "///2/1198/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1332, "atom1_serNum": 12602, "atom2_serNum": 22283, "donAcc_type": "acceptable", "distance": 2.517, "atom1_id": "///2/668/O2'", "atom2_id": "///2/1197/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1333, "atom1_serNum": 12606, "atom2_serNum": 12653, "donAcc_type": "standard", "distance": 3.577, "atom1_id": "///2/668/N7", "atom2_id": "///2/670/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1334, "atom1_serNum": 12612, "atom2_serNum": 22293, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///2/668/N3", "atom2_id": "///2/1197/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1335, "atom1_serNum": 12634, "atom2_serNum": 21565, "donAcc_type": "acceptable", "distance": 2.658, "atom1_id": "///2/669/N3", "atom2_id": "///2/1164/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1336, "atom1_serNum": 12642, "atom2_serNum": 21561, "donAcc_type": "questionable", "distance": 3.034, "atom1_id": "///2/670/O4'", "atom2_id": "///2/1164/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1337, "atom1_serNum": 12646, "atom2_serNum": 21545, "donAcc_type": "acceptable", "distance": 2.417, "atom1_id": "///2/670/O2'", "atom2_id": "///2/1163/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1338, "atom1_serNum": 12668, "atom2_serNum": 19940, "donAcc_type": "acceptable", "distance": 3.663, "atom1_id": "///2/671/O2'", "atom2_id": "///2/1088/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1339, "atom1_serNum": 12675, "atom2_serNum": 21512, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///2/671/N6", "atom2_id": "///2/1161/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1340, "atom1_serNum": 12676, "atom2_serNum": 21510, "donAcc_type": "standard", "distance": 2.777, "atom1_id": "///2/671/N1", "atom2_id": "///2/1161/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1341, "atom1_serNum": 12690, "atom2_serNum": 12727, "donAcc_type": "acceptable", "distance": 3.346, "atom1_id": "///2/672/O2'", "atom2_id": "///2/674/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1342, "atom1_serNum": 12697, "atom2_serNum": 21505, "donAcc_type": "acceptable", "distance": 3.247, "atom1_id": "///2/672/N6", "atom2_id": "///2/1161/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1343, "atom1_serNum": 12719, "atom2_serNum": 18755, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///2/673/O6", "atom2_id": "///2/1032/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1344, "atom1_serNum": 12720, "atom2_serNum": 18753, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///2/673/N1", "atom2_id": "///2/1032/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1345, "atom1_serNum": 12722, "atom2_serNum": 18015, "donAcc_type": "standard", "distance": 3.386, "atom1_id": "///2/673/N2", "atom2_id": "///2/997/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1346, "atom1_serNum": 12722, "atom2_serNum": 18752, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///2/673/N2", "atom2_id": "///2/1032/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1347, "atom1_serNum": 12735, "atom2_serNum": 12751, "donAcc_type": "acceptable", "distance": 3.111, "atom1_id": "///2/674/O2'", "atom2_id": "///2/675/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1348, "atom1_serNum": 12735, "atom2_serNum": 17983, "donAcc_type": "acceptable", "distance": 2.509, "atom1_id": "///2/674/O2'", "atom2_id": "///2/996/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1349, "atom1_serNum": 12735, "atom2_serNum": 17993, "donAcc_type": "acceptable", "distance": 3.182, "atom1_id": "///2/674/O2'", "atom2_id": "///2/996/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1350, "atom1_serNum": 12739, "atom2_serNum": 18734, "donAcc_type": "questionable", "distance": 3.255, "atom1_id": "///2/674/O2", "atom2_id": "///2/1031/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1351, "atom1_serNum": 12740, "atom2_serNum": 18733, "donAcc_type": "standard", "distance": 3.211, "atom1_id": "///2/674/N3", "atom2_id": "///2/1031/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1352, "atom1_serNum": 12760, "atom2_serNum": 18712, "donAcc_type": "standard", "distance": 3.067, "atom1_id": "///2/675/N3", "atom2_id": "///2/1030/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1353, "atom1_serNum": 12775, "atom2_serNum": 57269, "donAcc_type": "acceptable", "distance": 3.336, "atom1_id": "///2/676/O2'", "atom2_id": "///O/120/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1354, "atom1_serNum": 12779, "atom2_serNum": 18691, "donAcc_type": "standard", "distance": 3.221, "atom1_id": "///2/676/O2", "atom2_id": "///2/1029/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1355, "atom1_serNum": 12780, "atom2_serNum": 18689, "donAcc_type": "standard", "distance": 3.316, "atom1_id": "///2/676/N3", "atom2_id": "///2/1029/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1356, "atom1_serNum": 12782, "atom2_serNum": 18688, "donAcc_type": "standard", "distance": 3.264, "atom1_id": "///2/676/N4", "atom2_id": "///2/1029/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1357, "atom1_serNum": 12786, "atom2_serNum": 57269, "donAcc_type": "acceptable", "distance": 3.615, "atom1_id": "///2/677/OP1", "atom2_id": "///O/120/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1358, "atom1_serNum": 12786, "atom2_serNum": 57308, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///2/677/OP1", "atom2_id": "///O/124/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1359, "atom1_serNum": 12803, "atom2_serNum": 18629, "donAcc_type": "standard", "distance": 2.336, "atom1_id": "///2/677/N1", "atom2_id": "///2/1027/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1360, "atom1_serNum": 12805, "atom2_serNum": 18629, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///2/677/N2", "atom2_id": "///2/1027/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1361, "atom1_serNum": 12805, "atom2_serNum": 18663, "donAcc_type": "standard", "distance": 2.830, "atom1_id": "///2/677/N2", "atom2_id": "///2/1028/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1362, "atom1_serNum": 12806, "atom2_serNum": 18666, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///2/677/N3", "atom2_id": "///2/1028/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1363, "atom1_serNum": 12810, "atom2_serNum": 18624, "donAcc_type": "standard", "distance": 2.631, "atom1_id": "///2/678/OP2", "atom2_id": "///2/1026/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1364, "atom1_serNum": 12822, "atom2_serNum": 18644, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///2/678/O2", "atom2_id": "///2/1027/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1365, "atom1_serNum": 12823, "atom2_serNum": 18641, "donAcc_type": "standard", "distance": 2.830, "atom1_id": "///2/678/N3", "atom2_id": "///2/1027/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1366, "atom1_serNum": 12845, "atom2_serNum": 18621, "donAcc_type": "standard", "distance": 2.595, "atom1_id": "///2/679/N6", "atom2_id": "///2/1026/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1367, "atom1_serNum": 12867, "atom2_serNum": 18602, "donAcc_type": "standard", "distance": 3.704, "atom1_id": "///2/680/O6", "atom2_id": "///2/1025/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1368, "atom1_serNum": 12868, "atom2_serNum": 18601, "donAcc_type": "standard", "distance": 3.941, "atom1_id": "///2/680/N1", "atom2_id": "///2/1025/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1369, "atom1_serNum": 12870, "atom2_serNum": 21483, "donAcc_type": "standard", "distance": 3.116, "atom1_id": "///2/680/N2", "atom2_id": "///2/1160/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1370, "atom1_serNum": 12870, "atom2_serNum": 21496, "donAcc_type": "standard", "distance": 3.146, "atom1_id": "///2/680/N2", "atom2_id": "///2/1161/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1371, "atom1_serNum": 12870, "atom2_serNum": 21498, "donAcc_type": "standard", "distance": 3.231, "atom1_id": "///2/680/N2", "atom2_id": "///2/1161/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1372, "atom1_serNum": 12874, "atom2_serNum": 66507, "donAcc_type": "standard", "distance": 2.398, "atom1_id": "///2/681/OP1", "atom2_id": "///Y/8/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1373, "atom1_serNum": 12883, "atom2_serNum": 21476, "donAcc_type": "acceptable", "distance": 3.270, "atom1_id": "///2/681/O2'", "atom2_id": "///2/1160/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1374, "atom1_serNum": 12888, "atom2_serNum": 18583, "donAcc_type": "standard", "distance": 3.645, "atom1_id": "///2/681/N3", "atom2_id": "///2/1024/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1375, "atom1_serNum": 12890, "atom2_serNum": 18582, "donAcc_type": "standard", "distance": 3.754, "atom1_id": "///2/681/O4", "atom2_id": "///2/1024/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1376, "atom1_serNum": 12894, "atom2_serNum": 66497, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///2/682/OP1", "atom2_id": "///Y/8/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1377, "atom1_serNum": 12908, "atom2_serNum": 18561, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///2/682/N3", "atom2_id": "///2/1023/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1378, "atom1_serNum": 12910, "atom2_serNum": 18560, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///2/682/O4", "atom2_id": "///2/1023/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1379, "atom1_serNum": 12931, "atom2_serNum": 18525, "donAcc_type": "standard", "distance": 3.247, "atom1_id": "///2/683/N1", "atom2_id": "///2/1022/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1380, "atom1_serNum": 12933, "atom2_serNum": 18511, "donAcc_type": "standard", "distance": 3.560, "atom1_id": "///2/683/N2", "atom2_id": "///2/1021/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1381, "atom1_serNum": 12976, "atom2_serNum": 16284, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///2/685/N6", "atom2_id": "///2/917/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1382, "atom1_serNum": 12976, "atom2_serNum": 16304, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///2/685/N6", "atom2_id": "///2/918/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1383, "atom1_serNum": 12977, "atom2_serNum": 16282, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///2/685/N1", "atom2_id": "///2/917/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1384, "atom1_serNum": 12977, "atom2_serNum": 16302, "donAcc_type": "standard", "distance": 2.691, "atom1_id": "///2/685/N1", "atom2_id": "///2/918/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1385, "atom1_serNum": 12982, "atom2_serNum": 65654, "donAcc_type": "standard", "distance": 2.656, "atom1_id": "///2/686/OP1", "atom2_id": "///X/32/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1386, "atom1_serNum": 12995, "atom2_serNum": 16282, "donAcc_type": "standard", "distance": 2.467, "atom1_id": "///2/686/O2", "atom2_id": "///2/917/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1387, "atom1_serNum": 12995, "atom2_serNum": 49539, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///2/686/O2", "atom2_id": "///I/118/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1388, "atom1_serNum": 12996, "atom2_serNum": 16284, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///2/686/N3", "atom2_id": "///2/917/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1389, "atom1_serNum": 13003, "atom2_serNum": 65662, "donAcc_type": "standard", "distance": 3.328, "atom1_id": "///2/687/OP2", "atom2_id": "///X/32/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1390, "atom1_serNum": 13009, "atom2_serNum": 49563, "donAcc_type": "acceptable", "distance": 3.115, "atom1_id": "///2/687/O3'", "atom2_id": "///I/121/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1391, "atom1_serNum": 13011, "atom2_serNum": 49522, "donAcc_type": "acceptable", "distance": 3.730, "atom1_id": "///2/687/O2'", "atom2_id": "///I/116/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1392, "atom1_serNum": 13016, "atom2_serNum": 49540, "donAcc_type": "standard", "distance": 2.635, "atom1_id": "///2/687/N3", "atom2_id": "///I/118/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1393, "atom1_serNum": 13022, "atom2_serNum": 49563, "donAcc_type": "acceptable", "distance": 2.856, "atom1_id": "///2/688/OP1", "atom2_id": "///I/121/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1394, "atom1_serNum": 13022, "atom2_serNum": 49565, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///2/688/OP1", "atom2_id": "///I/122/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1395, "atom1_serNum": 13023, "atom2_serNum": 49578, "donAcc_type": "acceptable", "distance": 2.802, "atom1_id": "///2/688/OP2", "atom2_id": "///I/123/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1396, "atom1_serNum": 13027, "atom2_serNum": 13047, "donAcc_type": "questionable", "distance": 2.840, "atom1_id": "///2/688/O4'", "atom2_id": "///2/689/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1397, "atom1_serNum": 13031, "atom2_serNum": 13035, "donAcc_type": "acceptable", "distance": 3.104, "atom1_id": "///2/688/O2'", "atom2_id": "///2/688/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1398, "atom1_serNum": 13031, "atom2_serNum": 13043, "donAcc_type": "acceptable", "distance": 2.762, "atom1_id": "///2/688/O2'", "atom2_id": "///2/689/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1399, "atom1_serNum": 13051, "atom2_serNum": 13062, "donAcc_type": "acceptable", "distance": 2.547, "atom1_id": "///2/689/O2'", "atom2_id": "///2/690/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1400, "atom1_serNum": 13071, "atom2_serNum": 13090, "donAcc_type": "acceptable", "distance": 2.596, "atom1_id": "///2/690/O2'", "atom2_id": "///2/691/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1401, "atom1_serNum": 13078, "atom2_serNum": 13401, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///2/690/O6", "atom2_id": "///2/736/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1402, "atom1_serNum": 13079, "atom2_serNum": 13399, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///2/690/N1", "atom2_id": "///2/736/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1403, "atom1_serNum": 13081, "atom2_serNum": 13398, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///2/690/N2", "atom2_id": "///2/736/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1404, "atom1_serNum": 13094, "atom2_serNum": 13113, "donAcc_type": "acceptable", "distance": 3.193, "atom1_id": "///2/691/O2'", "atom2_id": "///2/692/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1405, "atom1_serNum": 13101, "atom2_serNum": 13381, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/691/O6", "atom2_id": "///2/735/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1406, "atom1_serNum": 13102, "atom2_serNum": 13379, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///2/691/N1", "atom2_id": "///2/735/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1407, "atom1_serNum": 13104, "atom2_serNum": 13378, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///2/691/N2", "atom2_id": "///2/735/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1408, "atom1_serNum": 13124, "atom2_serNum": 13361, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///2/692/O6", "atom2_id": "///2/734/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1409, "atom1_serNum": 13124, "atom2_serNum": 13381, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///2/692/O6", "atom2_id": "///2/735/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1410, "atom1_serNum": 13125, "atom2_serNum": 13359, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///2/692/N1", "atom2_id": "///2/734/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1411, "atom1_serNum": 13127, "atom2_serNum": 13358, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///2/692/N2", "atom2_id": "///2/734/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1412, "atom1_serNum": 13147, "atom2_serNum": 13339, "donAcc_type": "standard", "distance": 3.762, "atom1_id": "///2/693/N6", "atom2_id": "///2/733/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1413, "atom1_serNum": 13148, "atom2_serNum": 13338, "donAcc_type": "questionable", "distance": 3.186, "atom1_id": "///2/693/N1", "atom2_id": "///2/733/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1414, "atom1_serNum": 13148, "atom2_serNum": 13361, "donAcc_type": "standard", "distance": 2.737, "atom1_id": "///2/693/N1", "atom2_id": "///2/734/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1415, "atom1_serNum": 13162, "atom2_serNum": 13181, "donAcc_type": "acceptable", "distance": 3.010, "atom1_id": "///2/694/O2'", "atom2_id": "///2/695/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1416, "atom1_serNum": 13172, "atom2_serNum": 13318, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///2/694/N2", "atom2_id": "///2/732/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1417, "atom1_serNum": 13189, "atom2_serNum": 13301, "donAcc_type": "standard", "distance": 3.126, "atom1_id": "///2/695/O2", "atom2_id": "///2/731/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1418, "atom1_serNum": 13190, "atom2_serNum": 13299, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///2/695/N3", "atom2_id": "///2/731/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1419, "atom1_serNum": 13190, "atom2_serNum": 13319, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///2/695/N3", "atom2_id": "///2/732/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1420, "atom1_serNum": 13192, "atom2_serNum": 13298, "donAcc_type": "standard", "distance": 2.572, "atom1_id": "///2/695/N4", "atom2_id": "///2/731/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1421, "atom1_serNum": 13212, "atom2_serNum": 13278, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///2/696/O6", "atom2_id": "///2/730/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1422, "atom1_serNum": 13213, "atom2_serNum": 13276, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///2/696/N1", "atom2_id": "///2/730/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1423, "atom1_serNum": 13215, "atom2_serNum": 13275, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///2/696/N2", "atom2_id": "///2/730/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1424, "atom1_serNum": 13314, "atom2_serNum": 13330, "donAcc_type": "acceptable", "distance": 3.310, "atom1_id": "///2/732/O2'", "atom2_id": "///2/733/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1425, "atom1_serNum": 13339, "atom2_serNum": 13361, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///2/733/N3", "atom2_id": "///2/734/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1426, "atom1_serNum": 13354, "atom2_serNum": 13370, "donAcc_type": "acceptable", "distance": 3.260, "atom1_id": "///2/734/O2'", "atom2_id": "///2/735/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1427, "atom1_serNum": 13374, "atom2_serNum": 13390, "donAcc_type": "acceptable", "distance": 3.158, "atom1_id": "///2/735/O2'", "atom2_id": "///2/736/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1428, "atom1_serNum": 13414, "atom2_serNum": 13430, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///2/743/O2'", "atom2_id": "///2/744/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1429, "atom1_serNum": 13419, "atom2_serNum": 13873, "donAcc_type": "standard", "distance": 3.028, "atom1_id": "///2/743/N3", "atom2_id": "///2/798/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1430, "atom1_serNum": 13441, "atom2_serNum": 13849, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/744/O6", "atom2_id": "///2/797/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1431, "atom1_serNum": 13442, "atom2_serNum": 13847, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///2/744/N1", "atom2_id": "///2/797/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1432, "atom1_serNum": 13444, "atom2_serNum": 13846, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///2/744/N2", "atom2_id": "///2/797/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1433, "atom1_serNum": 13461, "atom2_serNum": 13829, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///2/745/O2", "atom2_id": "///2/796/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1434, "atom1_serNum": 13462, "atom2_serNum": 13827, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///2/745/N3", "atom2_id": "///2/796/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1435, "atom1_serNum": 13464, "atom2_serNum": 13826, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///2/745/N4", "atom2_id": "///2/796/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1436, "atom1_serNum": 13477, "atom2_serNum": 13493, "donAcc_type": "acceptable", "distance": 3.338, "atom1_id": "///2/749/O2'", "atom2_id": "///2/750/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1437, "atom1_serNum": 13482, "atom2_serNum": 13783, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///2/749/N3", "atom2_id": "///2/794/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1438, "atom1_serNum": 13484, "atom2_serNum": 13782, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///2/749/O4", "atom2_id": "///2/794/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1439, "atom1_serNum": 13501, "atom2_serNum": 13762, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///2/750/O2", "atom2_id": "///2/793/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1440, "atom1_serNum": 13502, "atom2_serNum": 13760, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/750/N3", "atom2_id": "///2/793/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1441, "atom1_serNum": 13504, "atom2_serNum": 13759, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///2/750/N4", "atom2_id": "///2/793/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1442, "atom1_serNum": 13517, "atom2_serNum": 13533, "donAcc_type": "acceptable", "distance": 2.475, "atom1_id": "///2/751/O2'", "atom2_id": "///2/752/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1443, "atom1_serNum": 13540, "atom2_serNum": 13556, "donAcc_type": "acceptable", "distance": 2.548, "atom1_id": "///2/752/O2'", "atom2_id": "///2/753/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1444, "atom1_serNum": 13540, "atom2_serNum": 13575, "donAcc_type": "acceptable", "distance": 2.636, "atom1_id": "///2/752/O2'", "atom2_id": "///2/754/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1445, "atom1_serNum": 13540, "atom2_serNum": 13576, "donAcc_type": "acceptable", "distance": 3.127, "atom1_id": "///2/752/O2'", "atom2_id": "///2/754/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1446, "atom1_serNum": 13547, "atom2_serNum": 13719, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///2/752/O6", "atom2_id": "///2/791/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1447, "atom1_serNum": 13563, "atom2_serNum": 13579, "donAcc_type": "acceptable", "distance": 3.144, "atom1_id": "///2/753/O2'", "atom2_id": "///2/754/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1448, "atom1_serNum": 13590, "atom2_serNum": 13699, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///2/754/O6", "atom2_id": "///2/790/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1449, "atom1_serNum": 13591, "atom2_serNum": 13697, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/754/N1", "atom2_id": "///2/790/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1450, "atom1_serNum": 13593, "atom2_serNum": 13696, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///2/754/N2", "atom2_id": "///2/790/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1451, "atom1_serNum": 13610, "atom2_serNum": 13679, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///2/755/O2", "atom2_id": "///2/789/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1452, "atom1_serNum": 13611, "atom2_serNum": 13677, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///2/755/N3", "atom2_id": "///2/789/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1453, "atom1_serNum": 13613, "atom2_serNum": 13676, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///2/755/N4", "atom2_id": "///2/789/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1454, "atom1_serNum": 13630, "atom2_serNum": 13656, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///2/756/O2", "atom2_id": "///2/788/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1455, "atom1_serNum": 13631, "atom2_serNum": 13654, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/756/N3", "atom2_id": "///2/788/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1456, "atom1_serNum": 13633, "atom2_serNum": 13653, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///2/756/N4", "atom2_id": "///2/788/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1457, "atom1_serNum": 13692, "atom2_serNum": 13708, "donAcc_type": "acceptable", "distance": 3.116, "atom1_id": "///2/790/O2'", "atom2_id": "///2/791/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1458, "atom1_serNum": 13782, "atom2_serNum": 13826, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///2/794/N6", "atom2_id": "///2/796/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1459, "atom1_serNum": 13819, "atom2_serNum": 13835, "donAcc_type": "acceptable", "distance": 3.005, "atom1_id": "///2/796/O2'", "atom2_id": "///2/797/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1460, "atom1_serNum": 13842, "atom2_serNum": 13855, "donAcc_type": "acceptable", "distance": 2.893, "atom1_id": "///2/797/O2'", "atom2_id": "///2/798/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1461, "atom1_serNum": 13842, "atom2_serNum": 13858, "donAcc_type": "acceptable", "distance": 2.405, "atom1_id": "///2/797/O2'", "atom2_id": "///2/798/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1462, "atom1_serNum": 13876, "atom2_serNum": 49482, "donAcc_type": "questionable", "distance": 2.985, "atom1_id": "///2/799/OP1", "atom2_id": "///I/108/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1463, "atom1_serNum": 13892, "atom2_serNum": 15193, "donAcc_type": "questionable", "distance": 3.118, "atom1_id": "///2/799/O4", "atom2_id": "///2/866/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1464, "atom1_serNum": 13892, "atom2_serNum": 15194, "donAcc_type": "standard", "distance": 3.527, "atom1_id": "///2/799/O4", "atom2_id": "///2/866/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1465, "atom1_serNum": 13910, "atom2_serNum": 15193, "donAcc_type": "standard", "distance": 3.277, "atom1_id": "///2/800/N3", "atom2_id": "///2/866/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1466, "atom1_serNum": 13912, "atom2_serNum": 15174, "donAcc_type": "standard", "distance": 3.328, "atom1_id": "///2/800/O4", "atom2_id": "///2/865/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1467, "atom1_serNum": 13912, "atom2_serNum": 15175, "donAcc_type": "questionable", "distance": 2.989, "atom1_id": "///2/800/O4", "atom2_id": "///2/865/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1468, "atom1_serNum": 13930, "atom2_serNum": 15153, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///2/801/N3", "atom2_id": "///2/864/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1469, "atom1_serNum": 13932, "atom2_serNum": 15152, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///2/801/O4", "atom2_id": "///2/864/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1470, "atom1_serNum": 13952, "atom2_serNum": 15132, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///2/802/N6", "atom2_id": "///2/863/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1471, "atom1_serNum": 13953, "atom2_serNum": 15130, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///2/802/N1", "atom2_id": "///2/863/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1472, "atom1_serNum": 13967, "atom2_serNum": 66399, "donAcc_type": "acceptable", "distance": 3.513, "atom1_id": "///2/803/O2'", "atom2_id": "///X/124/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1473, "atom1_serNum": 13971, "atom2_serNum": 15110, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///2/803/O2", "atom2_id": "///2/862/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1474, "atom1_serNum": 13974, "atom2_serNum": 15089, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///2/803/N4", "atom2_id": "///2/861/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1475, "atom1_serNum": 13978, "atom2_serNum": 66060, "donAcc_type": "standard", "distance": 3.116, "atom1_id": "///2/804/OP1", "atom2_id": "///X/82/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1476, "atom1_serNum": 13987, "atom2_serNum": 66381, "donAcc_type": "acceptable", "distance": 3.264, "atom1_id": "///2/804/O2'", "atom2_id": "///X/121/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1477, "atom1_serNum": 13987, "atom2_serNum": 66383, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///2/804/O2'", "atom2_id": "///X/122/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1478, "atom1_serNum": 13991, "atom2_serNum": 15066, "donAcc_type": "standard", "distance": 2.299, "atom1_id": "///2/804/O2", "atom2_id": "///2/860/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1479, "atom1_serNum": 13991, "atom2_serNum": 15068, "donAcc_type": "standard", "distance": 3.136, "atom1_id": "///2/804/O2", "atom2_id": "///2/860/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1480, "atom1_serNum": 13992, "atom2_serNum": 15065, "donAcc_type": "standard", "distance": 3.360, "atom1_id": "///2/804/N3", "atom2_id": "///2/860/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1481, "atom1_serNum": 13998, "atom2_serNum": 66061, "donAcc_type": "standard", "distance": 2.962, "atom1_id": "///2/805/OP1", "atom2_id": "///X/83/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1482, "atom1_serNum": 14005, "atom2_serNum": 66375, "donAcc_type": "standard", "distance": 3.559, "atom1_id": "///2/805/O3'", "atom2_id": "///X/120/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1483, "atom1_serNum": 14012, "atom2_serNum": 15021, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///2/805/N3", "atom2_id": "///2/858/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1484, "atom1_serNum": 14012, "atom2_serNum": 15042, "donAcc_type": "standard", "distance": 2.536, "atom1_id": "///2/805/N3", "atom2_id": "///2/859/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1485, "atom1_serNum": 14014, "atom2_serNum": 15020, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///2/805/O4", "atom2_id": "///2/858/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1486, "atom1_serNum": 14047, "atom2_serNum": 14066, "donAcc_type": "acceptable", "distance": 2.865, "atom1_id": "///2/807/O2'", "atom2_id": "///2/808/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1487, "atom1_serNum": 14054, "atom2_serNum": 14980, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///2/807/O6", "atom2_id": "///2/856/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1488, "atom1_serNum": 14055, "atom2_serNum": 14978, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/807/N1", "atom2_id": "///2/856/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1489, "atom1_serNum": 14057, "atom2_serNum": 14977, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///2/807/N2", "atom2_id": "///2/856/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1490, "atom1_serNum": 14077, "atom2_serNum": 14957, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///2/808/N6", "atom2_id": "///2/855/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1491, "atom1_serNum": 14078, "atom2_serNum": 14958, "donAcc_type": "standard", "distance": 2.775, "atom1_id": "///2/808/N1", "atom2_id": "///2/855/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1492, "atom1_serNum": 14084, "atom2_serNum": 44639, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///2/809/OP2", "atom2_id": "///F/187/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1493, "atom1_serNum": 14136, "atom2_serNum": 43456, "donAcc_type": "acceptable", "distance": 3.619, "atom1_id": "///2/811/O2'", "atom2_id": "///F/39/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1494, "atom1_serNum": 14158, "atom2_serNum": 43242, "donAcc_type": "acceptable", "distance": 2.686, "atom1_id": "///2/812/O2'", "atom2_id": "///F/12/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1495, "atom1_serNum": 14171, "atom2_serNum": 43271, "donAcc_type": "standard", "distance": 3.122, "atom1_id": "///2/813/OP1", "atom2_id": "///F/16/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1496, "atom1_serNum": 14178, "atom2_serNum": 43328, "donAcc_type": "standard", "distance": 3.451, "atom1_id": "///2/813/O3'", "atom2_id": "///F/22/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1497, "atom1_serNum": 14193, "atom2_serNum": 43328, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///2/814/OP1", "atom2_id": "///F/22/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1498, "atom1_serNum": 14213, "atom2_serNum": 51916, "donAcc_type": "standard", "distance": 3.589, "atom1_id": "///2/815/OP1", "atom2_id": "///K/10/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1499, "atom1_serNum": 14227, "atom2_serNum": 14831, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///2/815/N3", "atom2_id": "///2/849/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1500, "atom1_serNum": 14229, "atom2_serNum": 14249, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///2/815/O4", "atom2_id": "///2/816/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1501, "atom1_serNum": 14229, "atom2_serNum": 14830, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///2/815/O4", "atom2_id": "///2/849/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1502, "atom1_serNum": 14234, "atom2_serNum": 51916, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///2/816/OP2", "atom2_id": "///K/10/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1503, "atom1_serNum": 14249, "atom2_serNum": 14810, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///2/816/N6", "atom2_id": "///2/848/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1504, "atom1_serNum": 14250, "atom2_serNum": 14808, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/816/N1", "atom2_id": "///2/848/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1505, "atom1_serNum": 14264, "atom2_serNum": 14283, "donAcc_type": "acceptable", "distance": 3.590, "atom1_id": "///2/817/O2'", "atom2_id": "///2/818/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1506, "atom1_serNum": 14264, "atom2_serNum": 14788, "donAcc_type": "acceptable", "distance": 3.320, "atom1_id": "///2/817/O2'", "atom2_id": "///2/847/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1507, "atom1_serNum": 14264, "atom2_serNum": 52459, "donAcc_type": "acceptable", "distance": 3.195, "atom1_id": "///2/817/O2'", "atom2_id": "///K/73/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1508, "atom1_serNum": 14274, "atom2_serNum": 14785, "donAcc_type": "standard", "distance": 3.168, "atom1_id": "///2/817/N2", "atom2_id": "///2/847/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1509, "atom1_serNum": 14275, "atom2_serNum": 14788, "donAcc_type": "standard", "distance": 3.225, "atom1_id": "///2/817/N3", "atom2_id": "///2/847/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1510, "atom1_serNum": 14278, "atom2_serNum": 52514, "donAcc_type": "standard", "distance": 2.727, "atom1_id": "///2/818/OP1", "atom2_id": "///K/80/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1511, "atom1_serNum": 14278, "atom2_serNum": 52515, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///2/818/OP1", "atom2_id": "///K/80/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1512, "atom1_serNum": 14301, "atom2_serNum": 52515, "donAcc_type": "standard", "distance": 2.607, "atom1_id": "///2/819/OP2", "atom2_id": "///K/80/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1513, "atom1_serNum": 14316, "atom2_serNum": 14531, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///2/819/O6", "atom2_id": "///2/829/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1514, "atom1_serNum": 14317, "atom2_serNum": 14529, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/819/N1", "atom2_id": "///2/829/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1515, "atom1_serNum": 14319, "atom2_serNum": 14528, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///2/819/N2", "atom2_id": "///2/829/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1516, "atom1_serNum": 14324, "atom2_serNum": 52503, "donAcc_type": "standard", "distance": 3.821, "atom1_id": "///2/820/OP2", "atom2_id": "///K/79/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1517, "atom1_serNum": 14336, "atom2_serNum": 14509, "donAcc_type": "standard", "distance": 3.232, "atom1_id": "///2/820/O2", "atom2_id": "///2/828/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1518, "atom1_serNum": 14337, "atom2_serNum": 14508, "donAcc_type": "standard", "distance": 3.405, "atom1_id": "///2/820/N3", "atom2_id": "///2/828/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1519, "atom1_serNum": 14345, "atom2_serNum": 53097, "donAcc_type": "standard", "distance": 3.425, "atom1_id": "///2/821/O5'", "atom2_id": "///K/150/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1520, "atom1_serNum": 14359, "atom2_serNum": 53088, "donAcc_type": "standard", "distance": 3.423, "atom1_id": "///2/821/O6", "atom2_id": "///K/150/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1521, "atom1_serNum": 14359, "atom2_serNum": 53120, "donAcc_type": "acceptable", "distance": 3.709, "atom1_id": "///2/821/O6", "atom2_id": "///K/153/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1522, "atom1_serNum": 14360, "atom2_serNum": 53076, "donAcc_type": "standard", "distance": 3.182, "atom1_id": "///2/821/N1", "atom2_id": "///K/148/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1523, "atom1_serNum": 14362, "atom2_serNum": 14413, "donAcc_type": "standard", "distance": 3.682, "atom1_id": "///2/821/N2", "atom2_id": "///2/824/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1524, "atom1_serNum": 14379, "atom2_serNum": 14464, "donAcc_type": "standard", "distance": 3.171, "atom1_id": "///2/822/O2", "atom2_id": "///2/826/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1525, "atom1_serNum": 14382, "atom2_serNum": 14461, "donAcc_type": "questionable", "distance": 3.221, "atom1_id": "///2/822/O4", "atom2_id": "///2/826/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1526, "atom1_serNum": 14435, "atom2_serNum": 14453, "donAcc_type": "acceptable", "distance": 3.108, "atom1_id": "///2/825/O2'", "atom2_id": "///2/826/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1527, "atom1_serNum": 14457, "atom2_serNum": 51906, "donAcc_type": "acceptable", "distance": 3.506, "atom1_id": "///2/826/O2'", "atom2_id": "///K/10/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1528, "atom1_serNum": 14492, "atom2_serNum": 43328, "donAcc_type": "standard", "distance": 3.425, "atom1_id": "///2/828/OP1", "atom2_id": "///F/22/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1529, "atom1_serNum": 14511, "atom2_serNum": 14544, "donAcc_type": "acceptable", "distance": 3.831, "atom1_id": "///2/828/N2", "atom2_id": "///2/830/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1530, "atom1_serNum": 14515, "atom2_serNum": 43320, "donAcc_type": "standard", "distance": 3.162, "atom1_id": "///2/829/OP1", "atom2_id": "///F/22/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1531, "atom1_serNum": 14522, "atom2_serNum": 14745, "donAcc_type": "standard", "distance": 3.239, "atom1_id": "///2/829/O3'", "atom2_id": "///2/845/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1532, "atom1_serNum": 14524, "atom2_serNum": 14745, "donAcc_type": "acceptable", "distance": 2.676, "atom1_id": "///2/829/O2'", "atom2_id": "///2/845/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1533, "atom1_serNum": 14551, "atom2_serNum": 14719, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///2/830/N6", "atom2_id": "///2/844/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1534, "atom1_serNum": 14552, "atom2_serNum": 14720, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///2/830/N1", "atom2_id": "///2/844/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1535, "atom1_serNum": 14573, "atom2_serNum": 14702, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/831/O6", "atom2_id": "///2/843/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1536, "atom1_serNum": 14574, "atom2_serNum": 14700, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///2/831/N1", "atom2_id": "///2/843/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1537, "atom1_serNum": 14576, "atom2_serNum": 14699, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///2/831/N2", "atom2_id": "///2/843/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1538, "atom1_serNum": 14589, "atom2_serNum": 14605, "donAcc_type": "acceptable", "distance": 2.664, "atom1_id": "///2/832/O2'", "atom2_id": "///2/833/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1539, "atom1_serNum": 14589, "atom2_serNum": 14608, "donAcc_type": "acceptable", "distance": 2.535, "atom1_id": "///2/832/O2'", "atom2_id": "///2/833/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1540, "atom1_serNum": 14596, "atom2_serNum": 14682, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///2/832/O6", "atom2_id": "///2/842/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1541, "atom1_serNum": 14597, "atom2_serNum": 14680, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/832/N1", "atom2_id": "///2/842/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1542, "atom1_serNum": 14599, "atom2_serNum": 14679, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///2/832/N2", "atom2_id": "///2/842/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1543, "atom1_serNum": 14619, "atom2_serNum": 14659, "donAcc_type": "standard", "distance": 2.691, "atom1_id": "///2/833/N4", "atom2_id": "///2/841/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1544, "atom1_serNum": 14644, "atom2_serNum": 67645, "donAcc_type": "acceptable", "distance": 3.468, "atom1_id": "///2/841/OP2", "atom2_id": "///Z/14/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1545, "atom1_serNum": 14656, "atom2_serNum": 67621, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///2/841/N7", "atom2_id": "///Z/12/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1546, "atom1_serNum": 14659, "atom2_serNum": 67612, "donAcc_type": "standard", "distance": 3.615, "atom1_id": "///2/841/O6", "atom2_id": "///Z/11/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1547, "atom1_serNum": 14749, "atom2_serNum": 14777, "donAcc_type": "questionable", "distance": 3.242, "atom1_id": "///2/846/OP1", "atom2_id": "///2/847/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1548, "atom1_serNum": 14750, "atom2_serNum": 44019, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///2/846/OP2", "atom2_id": "///F/108/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1549, "atom1_serNum": 14750, "atom2_serNum": 44020, "donAcc_type": "standard", "distance": 2.492, "atom1_id": "///2/846/OP2", "atom2_id": "///F/108/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1550, "atom1_serNum": 14863, "atom2_serNum": 14895, "donAcc_type": "standard", "distance": 2.651, "atom1_id": "///2/851/O3'", "atom2_id": "///2/852/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1551, "atom1_serNum": 14865, "atom2_serNum": 14895, "donAcc_type": "acceptable", "distance": 2.368, "atom1_id": "///2/851/O2'", "atom2_id": "///2/852/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1552, "atom1_serNum": 14885, "atom2_serNum": 54962, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///2/852/O2'", "atom2_id": "///M/97/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1553, "atom1_serNum": 14950, "atom2_serNum": 54739, "donAcc_type": "acceptable", "distance": 2.735, "atom1_id": "///2/855/O2'", "atom2_id": "///M/71/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1554, "atom1_serNum": 14973, "atom2_serNum": 44774, "donAcc_type": "acceptable", "distance": 3.316, "atom1_id": "///2/856/O2'", "atom2_id": "///F/204/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1555, "atom1_serNum": 14991, "atom2_serNum": 44757, "donAcc_type": "standard", "distance": 3.601, "atom1_id": "///2/857/O3'", "atom2_id": "///F/201/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1556, "atom1_serNum": 14993, "atom2_serNum": 15009, "donAcc_type": "acceptable", "distance": 3.119, "atom1_id": "///2/857/O2'", "atom2_id": "///2/858/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1557, "atom1_serNum": 14993, "atom2_serNum": 44735, "donAcc_type": "acceptable", "distance": 3.730, "atom1_id": "///2/857/O2'", "atom2_id": "///F/199/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1558, "atom1_serNum": 15049, "atom2_serNum": 49478, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///2/860/OP1", "atom2_id": "///I/107/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1559, "atom1_serNum": 15058, "atom2_serNum": 15077, "donAcc_type": "acceptable", "distance": 2.751, "atom1_id": "///2/860/O2'", "atom2_id": "///2/861/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1560, "atom1_serNum": 15068, "atom2_serNum": 66268, "donAcc_type": "acceptable", "distance": 2.666, "atom1_id": "///2/860/N2", "atom2_id": "///X/107/OG", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1561, "atom1_serNum": 15069, "atom2_serNum": 66268, "donAcc_type": "acceptable", "distance": 2.688, "atom1_id": "///2/860/N3", "atom2_id": "///X/107/OG", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1562, "atom1_serNum": 15081, "atom2_serNum": 49469, "donAcc_type": "acceptable", "distance": 2.755, "atom1_id": "///2/861/O2'", "atom2_id": "///I/106/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1563, "atom1_serNum": 15091, "atom2_serNum": 15110, "donAcc_type": "standard", "distance": 3.986, "atom1_id": "///2/861/N3", "atom2_id": "///2/862/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1564, "atom1_serNum": 15095, "atom2_serNum": 49444, "donAcc_type": "standard", "distance": 3.394, "atom1_id": "///2/862/OP2", "atom2_id": "///I/103/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1565, "atom1_serNum": 15123, "atom2_serNum": 66024, "donAcc_type": "standard", "distance": 3.759, "atom1_id": "///2/863/O3'", "atom2_id": "///X/78/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1566, "atom1_serNum": 15129, "atom2_serNum": 66399, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///2/863/O2", "atom2_id": "///X/124/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1567, "atom1_serNum": 15132, "atom2_serNum": 15152, "donAcc_type": "standard", "distance": 2.512, "atom1_id": "///2/863/O4", "atom2_id": "///2/864/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1568, "atom1_serNum": 15145, "atom2_serNum": 15163, "donAcc_type": "acceptable", "distance": 2.906, "atom1_id": "///2/864/O2'", "atom2_id": "///2/865/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1569, "atom1_serNum": 15209, "atom2_serNum": 15225, "donAcc_type": "acceptable", "distance": 3.196, "atom1_id": "///2/867/O2'", "atom2_id": "///2/868/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1570, "atom1_serNum": 15209, "atom2_serNum": 15228, "donAcc_type": "acceptable", "distance": 2.242, "atom1_id": "///2/867/O2'", "atom2_id": "///2/868/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1571, "atom1_serNum": 15251, "atom2_serNum": 15360, "donAcc_type": "questionable", "distance": 3.135, "atom1_id": "///2/869/O4'", "atom2_id": "///2/874/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1572, "atom1_serNum": 15262, "atom2_serNum": 49506, "donAcc_type": "standard", "distance": 2.661, "atom1_id": "///2/869/N6", "atom2_id": "///I/115/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1573, "atom1_serNum": 15265, "atom2_serNum": 15323, "donAcc_type": "questionable", "distance": 3.363, "atom1_id": "///2/869/N3", "atom2_id": "///2/872/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1574, "atom1_serNum": 15265, "atom2_serNum": 15326, "donAcc_type": "standard", "distance": 3.770, "atom1_id": "///2/869/N3", "atom2_id": "///2/872/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1575, "atom1_serNum": 15284, "atom2_serNum": 16248, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///2/870/N6", "atom2_id": "///2/916/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1576, "atom1_serNum": 15299, "atom2_serNum": 15332, "donAcc_type": "acceptable", "distance": 3.058, "atom1_id": "///2/871/O2'", "atom2_id": "///2/873/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1577, "atom1_serNum": 15319, "atom2_serNum": 15356, "donAcc_type": "acceptable", "distance": 2.752, "atom1_id": "///2/872/O2'", "atom2_id": "///2/874/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1578, "atom1_serNum": 15326, "atom2_serNum": 16216, "donAcc_type": "standard", "distance": 2.373, "atom1_id": "///2/872/N6", "atom2_id": "///2/914/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1579, "atom1_serNum": 15327, "atom2_serNum": 16217, "donAcc_type": "standard", "distance": 2.516, "atom1_id": "///2/872/N1", "atom2_id": "///2/914/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1580, "atom1_serNum": 15364, "atom2_serNum": 15378, "donAcc_type": "acceptable", "distance": 2.707, "atom1_id": "///2/874/O2'", "atom2_id": "///2/875/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1581, "atom1_serNum": 15371, "atom2_serNum": 16177, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///2/874/O6", "atom2_id": "///2/912/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1582, "atom1_serNum": 15372, "atom2_serNum": 16175, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/874/N1", "atom2_id": "///2/912/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1583, "atom1_serNum": 15374, "atom2_serNum": 16174, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///2/874/N2", "atom2_id": "///2/912/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1584, "atom1_serNum": 15374, "atom2_serNum": 49501, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///2/874/N2", "atom2_id": "///I/114/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1585, "atom1_serNum": 15375, "atom2_serNum": 49502, "donAcc_type": "standard", "distance": 2.627, "atom1_id": "///2/874/N3", "atom2_id": "///I/114/NE2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1586, "atom1_serNum": 15394, "atom2_serNum": 16154, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///2/875/N6", "atom2_id": "///2/911/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1587, "atom1_serNum": 15394, "atom2_serNum": 16155, "donAcc_type": "standard", "distance": 2.662, "atom1_id": "///2/875/N6", "atom2_id": "///2/911/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1588, "atom1_serNum": 15409, "atom2_serNum": 15425, "donAcc_type": "acceptable", "distance": 2.480, "atom1_id": "///2/876/O2'", "atom2_id": "///2/877/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1589, "atom1_serNum": 15413, "atom2_serNum": 16137, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///2/876/O2", "atom2_id": "///2/910/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1590, "atom1_serNum": 15413, "atom2_serNum": 16154, "donAcc_type": "questionable", "distance": 2.777, "atom1_id": "///2/876/O2", "atom2_id": "///2/911/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1591, "atom1_serNum": 15414, "atom2_serNum": 16135, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///2/876/N3", "atom2_id": "///2/910/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1592, "atom1_serNum": 15416, "atom2_serNum": 16134, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///2/876/N4", "atom2_id": "///2/910/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1593, "atom1_serNum": 15456, "atom2_serNum": 16089, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///2/878/O6", "atom2_id": "///2/908/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1594, "atom1_serNum": 15457, "atom2_serNum": 16090, "donAcc_type": "standard", "distance": 3.324, "atom1_id": "///2/878/N1", "atom2_id": "///2/908/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1595, "atom1_serNum": 15459, "atom2_serNum": 16090, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///2/878/N2", "atom2_id": "///2/908/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1596, "atom1_serNum": 15476, "atom2_serNum": 16069, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///2/879/O2", "atom2_id": "///2/907/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1597, "atom1_serNum": 15477, "atom2_serNum": 16067, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/879/N3", "atom2_id": "///2/907/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1598, "atom1_serNum": 15479, "atom2_serNum": 16046, "donAcc_type": "standard", "distance": 3.360, "atom1_id": "///2/879/N4", "atom2_id": "///2/906/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1599, "atom1_serNum": 15479, "atom2_serNum": 16066, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/879/N4", "atom2_id": "///2/907/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1600, "atom1_serNum": 15499, "atom2_serNum": 16044, "donAcc_type": "standard", "distance": 3.041, "atom1_id": "///2/880/O6", "atom2_id": "///2/906/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1601, "atom1_serNum": 15500, "atom2_serNum": 16043, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///2/880/N1", "atom2_id": "///2/906/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1602, "atom1_serNum": 15502, "atom2_serNum": 16043, "donAcc_type": "standard", "distance": 2.711, "atom1_id": "///2/880/N2", "atom2_id": "///2/906/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1603, "atom1_serNum": 15522, "atom2_serNum": 16026, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///2/881/O6", "atom2_id": "///2/905/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1604, "atom1_serNum": 15523, "atom2_serNum": 16024, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///2/881/N1", "atom2_id": "///2/905/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1605, "atom1_serNum": 15525, "atom2_serNum": 16023, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///2/881/N2", "atom2_id": "///2/905/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1606, "atom1_serNum": 15543, "atom2_serNum": 16005, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///2/882/N3", "atom2_id": "///2/904/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1607, "atom1_serNum": 15545, "atom2_serNum": 16004, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///2/882/O4", "atom2_id": "///2/904/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1608, "atom1_serNum": 15563, "atom2_serNum": 15983, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///2/883/N3", "atom2_id": "///2/903/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1609, "atom1_serNum": 15565, "atom2_serNum": 15982, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/883/O4", "atom2_id": "///2/903/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1610, "atom1_serNum": 15565, "atom2_serNum": 16004, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///2/883/O4", "atom2_id": "///2/904/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1611, "atom1_serNum": 15582, "atom2_serNum": 15962, "donAcc_type": "standard", "distance": 2.803, "atom1_id": "///2/884/O2", "atom2_id": "///2/902/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1612, "atom1_serNum": 15583, "atom2_serNum": 15960, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///2/884/N3", "atom2_id": "///2/902/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1613, "atom1_serNum": 15585, "atom2_serNum": 15959, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///2/884/N4", "atom2_id": "///2/902/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1614, "atom1_serNum": 15603, "atom2_serNum": 15959, "donAcc_type": "standard", "distance": 2.518, "atom1_id": "///2/885/N3", "atom2_id": "///2/902/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1615, "atom1_serNum": 15605, "atom2_serNum": 15937, "donAcc_type": "standard", "distance": 2.708, "atom1_id": "///2/885/O4", "atom2_id": "///2/901/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1616, "atom1_serNum": 15610, "atom2_serNum": 15645, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///2/886/OP2", "atom2_id": "///2/887/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1617, "atom1_serNum": 15625, "atom2_serNum": 15913, "donAcc_type": "standard", "distance": 3.270, "atom1_id": "///2/886/N6", "atom2_id": "///2/900/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1618, "atom1_serNum": 15626, "atom2_serNum": 15929, "donAcc_type": "acceptable", "distance": 2.955, "atom1_id": "///2/886/N1", "atom2_id": "///2/901/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1619, "atom1_serNum": 15640, "atom2_serNum": 15687, "donAcc_type": "acceptable", "distance": 3.192, "atom1_id": "///2/887/O2'", "atom2_id": "///2/889/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1620, "atom1_serNum": 15687, "atom2_serNum": 15894, "donAcc_type": "standard", "distance": 3.452, "atom1_id": "///2/889/O4", "atom2_id": "///2/899/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1621, "atom1_serNum": 15687, "atom2_serNum": 15896, "donAcc_type": "questionable", "distance": 2.757, "atom1_id": "///2/889/O4", "atom2_id": "///2/899/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1622, "atom1_serNum": 15705, "atom2_serNum": 15856, "donAcc_type": "standard", "distance": 2.393, "atom1_id": "///2/890/N3", "atom2_id": "///2/897/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1623, "atom1_serNum": 15775, "atom2_serNum": 15813, "donAcc_type": "questionable", "distance": 3.035, "atom1_id": "///2/894/OP2", "atom2_id": "///2/895/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1624, "atom1_serNum": 15776, "atom2_serNum": 15810, "donAcc_type": "questionable", "distance": 3.266, "atom1_id": "///2/894/O5'", "atom2_id": "///2/895/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1625, "atom1_serNum": 15975, "atom2_serNum": 15990, "donAcc_type": "acceptable", "distance": 3.065, "atom1_id": "///2/903/O2'", "atom2_id": "///2/904/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1626, "atom1_serNum": 15975, "atom2_serNum": 54562, "donAcc_type": "acceptable", "distance": 2.732, "atom1_id": "///2/903/O2'", "atom2_id": "///M/48/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1627, "atom1_serNum": 16044, "atom2_serNum": 16066, "donAcc_type": "standard", "distance": 2.639, "atom1_id": "///2/906/N3", "atom2_id": "///2/907/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1628, "atom1_serNum": 16059, "atom2_serNum": 16078, "donAcc_type": "acceptable", "distance": 2.982, "atom1_id": "///2/907/O2'", "atom2_id": "///2/908/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1629, "atom1_serNum": 16082, "atom2_serNum": 16100, "donAcc_type": "acceptable", "distance": 3.139, "atom1_id": "///2/908/O2'", "atom2_id": "///2/909/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1630, "atom1_serNum": 16170, "atom2_serNum": 16205, "donAcc_type": "acceptable", "distance": 3.607, "atom1_id": "///2/912/O2'", "atom2_id": "///2/914/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1631, "atom1_serNum": 16190, "atom2_serNum": 16205, "donAcc_type": "acceptable", "distance": 2.830, "atom1_id": "///2/913/O2'", "atom2_id": "///2/914/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1632, "atom1_serNum": 16190, "atom2_serNum": 16223, "donAcc_type": "acceptable", "distance": 3.664, "atom1_id": "///2/913/O2'", "atom2_id": "///2/915/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1633, "atom1_serNum": 16194, "atom2_serNum": 49402, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///2/913/N7", "atom2_id": "///I/99/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1634, "atom1_serNum": 16197, "atom2_serNum": 49544, "donAcc_type": "standard", "distance": 2.645, "atom1_id": "///2/913/N6", "atom2_id": "///I/119/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1635, "atom1_serNum": 16223, "atom2_serNum": 49557, "donAcc_type": "standard", "distance": 2.653, "atom1_id": "///2/915/OP1", "atom2_id": "///I/120/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1636, "atom1_serNum": 16224, "atom2_serNum": 16242, "donAcc_type": "standard", "distance": 2.277, "atom1_id": "///2/915/OP2", "atom2_id": "///2/915/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1637, "atom1_serNum": 16225, "atom2_serNum": 16242, "donAcc_type": "standard", "distance": 3.287, "atom1_id": "///2/915/O5'", "atom2_id": "///2/915/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1638, "atom1_serNum": 16246, "atom2_serNum": 49546, "donAcc_type": "acceptable", "distance": 3.361, "atom1_id": "///2/916/OP1", "atom2_id": "///I/119/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1639, "atom1_serNum": 16295, "atom2_serNum": 56466, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///2/918/O3'", "atom2_id": "///O/20/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1640, "atom1_serNum": 16297, "atom2_serNum": 16313, "donAcc_type": "acceptable", "distance": 2.235, "atom1_id": "///2/918/O2'", "atom2_id": "///2/919/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1641, "atom1_serNum": 16308, "atom2_serNum": 56466, "donAcc_type": "standard", "distance": 3.047, "atom1_id": "///2/919/OP1", "atom2_id": "///O/20/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1642, "atom1_serNum": 16309, "atom2_serNum": 56810, "donAcc_type": "standard", "distance": 2.329, "atom1_id": "///2/919/OP2", "atom2_id": "///O/64/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1643, "atom1_serNum": 16330, "atom2_serNum": 65870, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///2/920/OP1", "atom2_id": "///X/57/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1644, "atom1_serNum": 16339, "atom2_serNum": 16349, "donAcc_type": "acceptable", "distance": 3.220, "atom1_id": "///2/920/O2'", "atom2_id": "///2/920/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1645, "atom1_serNum": 16339, "atom2_serNum": 16375, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///2/920/O2'", "atom2_id": "///2/922/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1646, "atom1_serNum": 16339, "atom2_serNum": 16377, "donAcc_type": "acceptable", "distance": 2.975, "atom1_id": "///2/920/O2'", "atom2_id": "///2/922/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1647, "atom1_serNum": 16343, "atom2_serNum": 18518, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///2/920/N7", "atom2_id": "///2/1021/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1648, "atom1_serNum": 16346, "atom2_serNum": 18517, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///2/920/N6", "atom2_id": "///2/1021/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1649, "atom1_serNum": 16375, "atom2_serNum": 65436, "donAcc_type": "standard", "distance": 3.958, "atom1_id": "///2/922/OP1", "atom2_id": "///X/3/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1650, "atom1_serNum": 16376, "atom2_serNum": 65634, "donAcc_type": "standard", "distance": 3.429, "atom1_id": "///2/922/OP2", "atom2_id": "///X/28/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1651, "atom1_serNum": 16391, "atom2_serNum": 18501, "donAcc_type": "standard", "distance": 3.511, "atom1_id": "///2/922/N6", "atom2_id": "///2/1020/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1652, "atom1_serNum": 16391, "atom2_serNum": 18540, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/922/N6", "atom2_id": "///2/1022/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1653, "atom1_serNum": 16392, "atom2_serNum": 18538, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///2/922/N1", "atom2_id": "///2/1022/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1654, "atom1_serNum": 16397, "atom2_serNum": 56337, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///2/923/OP1", "atom2_id": "///O/3/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1655, "atom1_serNum": 16413, "atom2_serNum": 18478, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///2/923/O6", "atom2_id": "///2/1019/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1656, "atom1_serNum": 16414, "atom2_serNum": 18476, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/923/N1", "atom2_id": "///2/1019/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1657, "atom1_serNum": 16416, "atom2_serNum": 18475, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///2/923/N2", "atom2_id": "///2/1019/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1658, "atom1_serNum": 16416, "atom2_serNum": 18537, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///2/923/N2", "atom2_id": "///2/1022/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1659, "atom1_serNum": 16420, "atom2_serNum": 56338, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/924/OP1", "atom2_id": "///O/4/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1660, "atom1_serNum": 16421, "atom2_serNum": 56334, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///2/924/OP2", "atom2_id": "///O/3/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1661, "atom1_serNum": 16436, "atom2_serNum": 18456, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///2/924/O6", "atom2_id": "///2/1018/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1662, "atom1_serNum": 16437, "atom2_serNum": 18455, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///2/924/N1", "atom2_id": "///2/1018/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1663, "atom1_serNum": 16439, "atom2_serNum": 56987, "donAcc_type": "standard", "distance": 3.695, "atom1_id": "///2/924/N2", "atom2_id": "///O/87/OD2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1664, "atom1_serNum": 16443, "atom2_serNum": 57279, "donAcc_type": "standard", "distance": 2.449, "atom1_id": "///2/925/OP1", "atom2_id": "///O/121/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1665, "atom1_serNum": 16452, "atom2_serNum": 57014, "donAcc_type": "acceptable", "distance": 3.183, "atom1_id": "///2/925/O2'", "atom2_id": "///O/90/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1666, "atom1_serNum": 16462, "atom2_serNum": 18435, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///2/925/N2", "atom2_id": "///2/1017/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1667, "atom1_serNum": 16483, "atom2_serNum": 18395, "donAcc_type": "questionable", "distance": 3.790, "atom1_id": "///2/926/N1", "atom2_id": "///2/1015/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1668, "atom1_serNum": 16501, "atom2_serNum": 18378, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///2/927/O2", "atom2_id": "///2/1014/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1669, "atom1_serNum": 16501, "atom2_serNum": 70402, "donAcc_type": "standard", "distance": 3.238, "atom1_id": "///2/927/O2", "atom2_id": "///c/51/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1670, "atom1_serNum": 16502, "atom2_serNum": 18376, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///2/927/N3", "atom2_id": "///2/1014/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1671, "atom1_serNum": 16504, "atom2_serNum": 16524, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///2/927/N4", "atom2_id": "///2/928/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1672, "atom1_serNum": 16504, "atom2_serNum": 18375, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/927/N4", "atom2_id": "///2/1014/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1673, "atom1_serNum": 16513, "atom2_serNum": 70397, "donAcc_type": "questionable", "distance": 3.230, "atom1_id": "///2/928/O4'", "atom2_id": "///c/51/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1674, "atom1_serNum": 16517, "atom2_serNum": 16536, "donAcc_type": "acceptable", "distance": 2.843, "atom1_id": "///2/928/O2'", "atom2_id": "///2/929/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1675, "atom1_serNum": 16527, "atom2_serNum": 70515, "donAcc_type": "standard", "distance": 3.225, "atom1_id": "///2/928/N2", "atom2_id": "///c/68/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1676, "atom1_serNum": 16547, "atom2_serNum": 18333, "donAcc_type": "standard", "distance": 3.646, "atom1_id": "///2/929/O6", "atom2_id": "///2/1012/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1677, "atom1_serNum": 16550, "atom2_serNum": 18352, "donAcc_type": "standard", "distance": 2.707, "atom1_id": "///2/929/N2", "atom2_id": "///2/1013/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1678, "atom1_serNum": 16550, "atom2_serNum": 20291, "donAcc_type": "acceptable", "distance": 3.154, "atom1_id": "///2/929/N2", "atom2_id": "///2/1104/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1679, "atom1_serNum": 16563, "atom2_serNum": 20282, "donAcc_type": "acceptable", "distance": 2.320, "atom1_id": "///2/930/O2'", "atom2_id": "///2/1104/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1680, "atom1_serNum": 16568, "atom2_serNum": 18311, "donAcc_type": "standard", "distance": 3.788, "atom1_id": "///2/930/N3", "atom2_id": "///2/1011/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1681, "atom1_serNum": 16568, "atom2_serNum": 18334, "donAcc_type": "questionable", "distance": 3.288, "atom1_id": "///2/930/N3", "atom2_id": "///2/1012/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1682, "atom1_serNum": 16587, "atom2_serNum": 18291, "donAcc_type": "standard", "distance": 3.597, "atom1_id": "///2/931/O2", "atom2_id": "///2/1010/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1683, "atom1_serNum": 16587, "atom2_serNum": 18311, "donAcc_type": "standard", "distance": 3.228, "atom1_id": "///2/931/O2", "atom2_id": "///2/1011/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1684, "atom1_serNum": 16588, "atom2_serNum": 18289, "donAcc_type": "standard", "distance": 3.316, "atom1_id": "///2/931/N3", "atom2_id": "///2/1010/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1685, "atom1_serNum": 16590, "atom2_serNum": 18288, "donAcc_type": "standard", "distance": 3.064, "atom1_id": "///2/931/N4", "atom2_id": "///2/1010/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1686, "atom1_serNum": 16594, "atom2_serNum": 39043, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///2/932/OP1", "atom2_id": "///C/158/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1687, "atom1_serNum": 16603, "atom2_serNum": 16641, "donAcc_type": "acceptable", "distance": 2.923, "atom1_id": "///2/932/O2'", "atom2_id": "///2/934/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1688, "atom1_serNum": 16603, "atom2_serNum": 17917, "donAcc_type": "acceptable", "distance": 2.904, "atom1_id": "///2/932/O2'", "atom2_id": "///2/993/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1689, "atom1_serNum": 16603, "atom2_serNum": 17936, "donAcc_type": "acceptable", "distance": 2.961, "atom1_id": "///2/932/O2'", "atom2_id": "///2/994/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1690, "atom1_serNum": 16610, "atom2_serNum": 18266, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///2/932/O6", "atom2_id": "///2/1009/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1691, "atom1_serNum": 16611, "atom2_serNum": 18267, "donAcc_type": "standard", "distance": 3.378, "atom1_id": "///2/932/N1", "atom2_id": "///2/1009/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1692, "atom1_serNum": 16613, "atom2_serNum": 17940, "donAcc_type": "acceptable", "distance": 3.543, "atom1_id": "///2/932/N2", "atom2_id": "///2/994/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1693, "atom1_serNum": 16626, "atom2_serNum": 18072, "donAcc_type": "acceptable", "distance": 2.901, "atom1_id": "///2/933/O2'", "atom2_id": "///2/1000/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1694, "atom1_serNum": 16626, "atom2_serNum": 18088, "donAcc_type": "acceptable", "distance": 3.498, "atom1_id": "///2/933/O2'", "atom2_id": "///2/1001/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1695, "atom1_serNum": 16633, "atom2_serNum": 17902, "donAcc_type": "standard", "distance": 2.649, "atom1_id": "///2/933/O6", "atom2_id": "///2/992/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1696, "atom1_serNum": 16641, "atom2_serNum": 17927, "donAcc_type": "standard", "distance": 3.254, "atom1_id": "///2/934/OP2", "atom2_id": "///2/993/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1697, "atom1_serNum": 16645, "atom2_serNum": 17940, "donAcc_type": "acceptable", "distance": 2.666, "atom1_id": "///2/934/O4'", "atom2_id": "///2/994/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1698, "atom1_serNum": 16647, "atom2_serNum": 18059, "donAcc_type": "standard", "distance": 3.779, "atom1_id": "///2/934/O3'", "atom2_id": "///2/999/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1699, "atom1_serNum": 16656, "atom2_serNum": 18244, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///2/934/O6", "atom2_id": "///2/1008/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1700, "atom1_serNum": 16657, "atom2_serNum": 18245, "donAcc_type": "standard", "distance": 2.791, "atom1_id": "///2/934/N1", "atom2_id": "///2/1008/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1701, "atom1_serNum": 16659, "atom2_serNum": 57186, "donAcc_type": "standard", "distance": 3.297, "atom1_id": "///2/934/N2", "atom2_id": "///O/110/OD2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1702, "atom1_serNum": 16663, "atom2_serNum": 18068, "donAcc_type": "questionable", "distance": 3.101, "atom1_id": "///2/935/OP1", "atom2_id": "///2/1000/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1703, "atom1_serNum": 16679, "atom2_serNum": 18224, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/935/O6", "atom2_id": "///2/1007/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1704, "atom1_serNum": 16680, "atom2_serNum": 18222, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///2/935/N1", "atom2_id": "///2/1007/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1705, "atom1_serNum": 16682, "atom2_serNum": 18221, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///2/935/N2", "atom2_id": "///2/1007/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1706, "atom1_serNum": 16702, "atom2_serNum": 18204, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///2/936/O6", "atom2_id": "///2/1006/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1707, "atom1_serNum": 16703, "atom2_serNum": 18202, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///2/936/N1", "atom2_id": "///2/1006/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1708, "atom1_serNum": 16705, "atom2_serNum": 18201, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///2/936/N2", "atom2_id": "///2/1006/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1709, "atom1_serNum": 16722, "atom2_serNum": 18184, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///2/937/O2", "atom2_id": "///2/1005/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1710, "atom1_serNum": 16723, "atom2_serNum": 18182, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/937/N3", "atom2_id": "///2/1005/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1711, "atom1_serNum": 16725, "atom2_serNum": 18181, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///2/937/N4", "atom2_id": "///2/1005/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1712, "atom1_serNum": 16745, "atom2_serNum": 18161, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///2/938/N6", "atom2_id": "///2/1004/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1713, "atom1_serNum": 16746, "atom2_serNum": 18159, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///2/938/N1", "atom2_id": "///2/1004/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1714, "atom1_serNum": 16765, "atom2_serNum": 18141, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///2/939/N3", "atom2_id": "///2/1003/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1715, "atom1_serNum": 16785, "atom2_serNum": 18119, "donAcc_type": "questionable", "distance": 3.242, "atom1_id": "///2/940/N3", "atom2_id": "///2/1002/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1716, "atom1_serNum": 16785, "atom2_serNum": 18121, "donAcc_type": "standard", "distance": 3.373, "atom1_id": "///2/940/N3", "atom2_id": "///2/1002/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1717, "atom1_serNum": 16787, "atom2_serNum": 18121, "donAcc_type": "questionable", "distance": 2.860, "atom1_id": "///2/940/O4", "atom2_id": "///2/1002/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1718, "atom1_serNum": 16804, "atom2_serNum": 17752, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///2/941/O2", "atom2_id": "///2/985/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1719, "atom1_serNum": 16805, "atom2_serNum": 17750, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///2/941/N3", "atom2_id": "///2/985/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1720, "atom1_serNum": 16807, "atom2_serNum": 17749, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///2/941/N4", "atom2_id": "///2/985/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1721, "atom1_serNum": 16811, "atom2_serNum": 38864, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///2/942/OP1", "atom2_id": "///C/136/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1722, "atom1_serNum": 16811, "atom2_serNum": 39530, "donAcc_type": "standard", "distance": 3.571, "atom1_id": "///2/942/OP1", "atom2_id": "///C/216/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1723, "atom1_serNum": 16827, "atom2_serNum": 17729, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///2/942/O6", "atom2_id": "///2/984/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1724, "atom1_serNum": 16828, "atom2_serNum": 17727, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///2/942/N1", "atom2_id": "///2/984/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1725, "atom1_serNum": 16830, "atom2_serNum": 17726, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///2/942/N2", "atom2_id": "///2/984/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1726, "atom1_serNum": 16830, "atom2_serNum": 58431, "donAcc_type": "standard", "distance": 2.653, "atom1_id": "///2/942/N2", "atom2_id": "///P/138/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1727, "atom1_serNum": 16830, "atom2_serNum": 58432, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///2/942/N2", "atom2_id": "///P/138/OD2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1728, "atom1_serNum": 16835, "atom2_serNum": 39530, "donAcc_type": "standard", "distance": 2.651, "atom1_id": "///2/943/OP2", "atom2_id": "///C/216/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1729, "atom1_serNum": 16843, "atom2_serNum": 58407, "donAcc_type": "acceptable", "distance": 3.059, "atom1_id": "///2/943/O2'", "atom2_id": "///P/135/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1730, "atom1_serNum": 16847, "atom2_serNum": 58419, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/943/O2", "atom2_id": "///P/137/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1731, "atom1_serNum": 16848, "atom2_serNum": 58431, "donAcc_type": "standard", "distance": 3.785, "atom1_id": "///2/943/N3", "atom2_id": "///P/138/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1732, "atom1_serNum": 16850, "atom2_serNum": 17707, "donAcc_type": "standard", "distance": 3.184, "atom1_id": "///2/943/O4", "atom2_id": "///2/983/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1733, "atom1_serNum": 16870, "atom2_serNum": 17684, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/944/N6", "atom2_id": "///2/982/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1734, "atom1_serNum": 16871, "atom2_serNum": 17685, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///2/944/N1", "atom2_id": "///2/982/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1735, "atom1_serNum": 16889, "atom2_serNum": 19034, "donAcc_type": "acceptable", "distance": 2.784, "atom1_id": "///2/945/O2", "atom2_id": "///2/1045/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1736, "atom1_serNum": 16890, "atom2_serNum": 17663, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///2/945/N3", "atom2_id": "///2/981/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1737, "atom1_serNum": 16892, "atom2_serNum": 17662, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///2/945/O4", "atom2_id": "///2/981/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1738, "atom1_serNum": 16901, "atom2_serNum": 19034, "donAcc_type": "acceptable", "distance": 3.320, "atom1_id": "///2/946/O4'", "atom2_id": "///2/1045/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1739, "atom1_serNum": 16905, "atom2_serNum": 19032, "donAcc_type": "acceptable", "distance": 3.539, "atom1_id": "///2/946/O2'", "atom2_id": "///2/1045/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1740, "atom1_serNum": 16905, "atom2_serNum": 19045, "donAcc_type": "acceptable", "distance": 3.591, "atom1_id": "///2/946/O2'", "atom2_id": "///2/1046/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1741, "atom1_serNum": 16910, "atom2_serNum": 17641, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/946/N3", "atom2_id": "///2/980/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1742, "atom1_serNum": 16912, "atom2_serNum": 17640, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/946/O4", "atom2_id": "///2/980/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1743, "atom1_serNum": 16925, "atom2_serNum": 16944, "donAcc_type": "acceptable", "distance": 2.938, "atom1_id": "///2/947/O2'", "atom2_id": "///2/948/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1744, "atom1_serNum": 16932, "atom2_serNum": 17620, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///2/947/O6", "atom2_id": "///2/979/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1745, "atom1_serNum": 16933, "atom2_serNum": 17618, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/947/N1", "atom2_id": "///2/979/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1746, "atom1_serNum": 16935, "atom2_serNum": 17617, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///2/947/N2", "atom2_id": "///2/979/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1747, "atom1_serNum": 16953, "atom2_serNum": 17598, "donAcc_type": "standard", "distance": 3.611, "atom1_id": "///2/948/N3", "atom2_id": "///2/978/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1748, "atom1_serNum": 16955, "atom2_serNum": 17597, "donAcc_type": "standard", "distance": 3.279, "atom1_id": "///2/948/N4", "atom2_id": "///2/978/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1749, "atom1_serNum": 16975, "atom2_serNum": 17577, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///2/949/O6", "atom2_id": "///2/977/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1750, "atom1_serNum": 16976, "atom2_serNum": 17575, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///2/949/N1", "atom2_id": "///2/977/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1751, "atom1_serNum": 16978, "atom2_serNum": 17574, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///2/949/N2", "atom2_id": "///2/977/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1752, "atom1_serNum": 16995, "atom2_serNum": 17557, "donAcc_type": "standard", "distance": 2.718, "atom1_id": "///2/950/O2", "atom2_id": "///2/976/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1753, "atom1_serNum": 16996, "atom2_serNum": 17555, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/950/N3", "atom2_id": "///2/976/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1754, "atom1_serNum": 16998, "atom2_serNum": 17554, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/950/N4", "atom2_id": "///2/976/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1755, "atom1_serNum": 17015, "atom2_serNum": 17534, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///2/951/O2", "atom2_id": "///2/975/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1756, "atom1_serNum": 17016, "atom2_serNum": 17532, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/951/N3", "atom2_id": "///2/975/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1757, "atom1_serNum": 17018, "atom2_serNum": 17038, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///2/951/N4", "atom2_id": "///2/952/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1758, "atom1_serNum": 17018, "atom2_serNum": 17531, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///2/951/N4", "atom2_id": "///2/975/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1759, "atom1_serNum": 17031, "atom2_serNum": 17050, "donAcc_type": "acceptable", "distance": 2.700, "atom1_id": "///2/952/O2'", "atom2_id": "///2/953/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1760, "atom1_serNum": 17039, "atom2_serNum": 17509, "donAcc_type": "standard", "distance": 3.785, "atom1_id": "///2/952/N1", "atom2_id": "///2/974/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1761, "atom1_serNum": 17041, "atom2_serNum": 17508, "donAcc_type": "standard", "distance": 3.358, "atom1_id": "///2/952/N2", "atom2_id": "///2/974/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1762, "atom1_serNum": 17054, "atom2_serNum": 17067, "donAcc_type": "acceptable", "distance": 2.937, "atom1_id": "///2/953/O2'", "atom2_id": "///2/954/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1763, "atom1_serNum": 17058, "atom2_serNum": 57828, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///2/953/O2", "atom2_id": "///P/55/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1764, "atom1_serNum": 17059, "atom2_serNum": 57828, "donAcc_type": "standard", "distance": 3.223, "atom1_id": "///2/953/N3", "atom2_id": "///P/55/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1765, "atom1_serNum": 17074, "atom2_serNum": 57821, "donAcc_type": "acceptable", "distance": 3.905, "atom1_id": "///2/954/O2'", "atom2_id": "///P/55/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1766, "atom1_serNum": 17078, "atom2_serNum": 17469, "donAcc_type": "standard", "distance": 2.469, "atom1_id": "///2/954/O2", "atom2_id": "///2/972/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1767, "atom1_serNum": 17078, "atom2_serNum": 57827, "donAcc_type": "standard", "distance": 2.598, "atom1_id": "///2/954/O2", "atom2_id": "///P/55/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1768, "atom1_serNum": 17094, "atom2_serNum": 17403, "donAcc_type": "acceptable", "distance": 3.465, "atom1_id": "///2/955/O2'", "atom2_id": "///2/969/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1769, "atom1_serNum": 17098, "atom2_serNum": 17449, "donAcc_type": "standard", "distance": 2.567, "atom1_id": "///2/955/N7", "atom2_id": "///2/971/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1770, "atom1_serNum": 17101, "atom2_serNum": 17450, "donAcc_type": "standard", "distance": 2.685, "atom1_id": "///2/955/N6", "atom2_id": "///2/971/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1771, "atom1_serNum": 17102, "atom2_serNum": 17376, "donAcc_type": "acceptable", "distance": 2.534, "atom1_id": "///2/955/N1", "atom2_id": "///2/968/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1772, "atom1_serNum": 17123, "atom2_serNum": 17363, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/956/O6", "atom2_id": "///2/967/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1773, "atom1_serNum": 17124, "atom2_serNum": 17361, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/956/N1", "atom2_id": "///2/967/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1774, "atom1_serNum": 17126, "atom2_serNum": 17360, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///2/956/N2", "atom2_id": "///2/967/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1775, "atom1_serNum": 17126, "atom2_serNum": 17462, "donAcc_type": "acceptable", "distance": 3.197, "atom1_id": "///2/956/N2", "atom2_id": "///2/972/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1776, "atom1_serNum": 17130, "atom2_serNum": 57702, "donAcc_type": "questionable", "distance": 3.125, "atom1_id": "///2/957/OP1", "atom2_id": "///P/39/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1777, "atom1_serNum": 17130, "atom2_serNum": 57841, "donAcc_type": "acceptable", "distance": 3.413, "atom1_id": "///2/957/OP1", "atom2_id": "///P/57/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1778, "atom1_serNum": 17146, "atom2_serNum": 17343, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///2/957/N6", "atom2_id": "///2/966/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1779, "atom1_serNum": 17147, "atom2_serNum": 17341, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///2/957/N1", "atom2_id": "///2/966/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1780, "atom1_serNum": 17171, "atom2_serNum": 57924, "donAcc_type": "standard", "distance": 3.445, "atom1_id": "///2/958/N2", "atom2_id": "///P/68/OE2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1781, "atom1_serNum": 17175, "atom2_serNum": 58188, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///2/959/OP1", "atom2_id": "///P/104/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1782, "atom1_serNum": 17176, "atom2_serNum": 57695, "donAcc_type": "standard", "distance": 2.703, "atom1_id": "///2/959/OP2", "atom2_id": "///P/38/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1783, "atom1_serNum": 17184, "atom2_serNum": 17203, "donAcc_type": "acceptable", "distance": 2.916, "atom1_id": "///2/959/O2'", "atom2_id": "///2/960/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1784, "atom1_serNum": 17191, "atom2_serNum": 57923, "donAcc_type": "questionable", "distance": 2.877, "atom1_id": "///2/959/O6", "atom2_id": "///P/68/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1785, "atom1_serNum": 17192, "atom2_serNum": 57896, "donAcc_type": "standard", "distance": 3.123, "atom1_id": "///2/959/N1", "atom2_id": "///P/65/OD2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1786, "atom1_serNum": 17194, "atom2_serNum": 17264, "donAcc_type": "standard", "distance": 3.303, "atom1_id": "///2/959/N2", "atom2_id": "///2/963/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1787, "atom1_serNum": 17194, "atom2_serNum": 57896, "donAcc_type": "standard", "distance": 3.152, "atom1_id": "///2/959/N2", "atom2_id": "///P/65/OD2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1788, "atom1_serNum": 17207, "atom2_serNum": 17279, "donAcc_type": "acceptable", "distance": 2.331, "atom1_id": "///2/960/O2'", "atom2_id": "///2/963/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1789, "atom1_serNum": 17211, "atom2_serNum": 17264, "donAcc_type": "questionable", "distance": 2.728, "atom1_id": "///2/960/O2", "atom2_id": "///2/963/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1790, "atom1_serNum": 17218, "atom2_serNum": 58521, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/961/OP1", "atom2_id": "///P/149/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1791, "atom1_serNum": 17237, "atom2_serNum": 17246, "donAcc_type": "standard", "distance": 2.575, "atom1_id": "///2/961/N2", "atom2_id": "///2/962/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1792, "atom1_serNum": 17250, "atom2_serNum": 17265, "donAcc_type": "acceptable", "distance": 2.228, "atom1_id": "///2/962/O2'", "atom2_id": "///2/963/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1793, "atom1_serNum": 17250, "atom2_serNum": 17268, "donAcc_type": "acceptable", "distance": 2.878, "atom1_id": "///2/962/O2'", "atom2_id": "///2/963/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1794, "atom1_serNum": 17263, "atom2_serNum": 57897, "donAcc_type": "standard", "distance": 3.444, "atom1_id": "///2/963/OP1", "atom2_id": "///P/66/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1795, "atom1_serNum": 17272, "atom2_serNum": 17287, "donAcc_type": "acceptable", "distance": 2.440, "atom1_id": "///2/963/O2'", "atom2_id": "///2/964/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1796, "atom1_serNum": 17272, "atom2_serNum": 17290, "donAcc_type": "acceptable", "distance": 3.193, "atom1_id": "///2/963/O2'", "atom2_id": "///2/964/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1797, "atom1_serNum": 17294, "atom2_serNum": 17312, "donAcc_type": "acceptable", "distance": 2.485, "atom1_id": "///2/964/O2'", "atom2_id": "///2/965/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1798, "atom1_serNum": 17304, "atom2_serNum": 19226, "donAcc_type": "acceptable", "distance": 3.611, "atom1_id": "///2/964/N3", "atom2_id": "///2/1054/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1799, "atom1_serNum": 17308, "atom2_serNum": 17343, "donAcc_type": "questionable", "distance": 2.945, "atom1_id": "///2/965/OP2", "atom2_id": "///2/966/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1800, "atom1_serNum": 17316, "atom2_serNum": 19206, "donAcc_type": "acceptable", "distance": 2.840, "atom1_id": "///2/965/O2'", "atom2_id": "///2/1053/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1801, "atom1_serNum": 17320, "atom2_serNum": 19470, "donAcc_type": "standard", "distance": 2.561, "atom1_id": "///2/965/O2", "atom2_id": "///2/1065/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1802, "atom1_serNum": 17323, "atom2_serNum": 19460, "donAcc_type": "acceptable", "distance": 3.680, "atom1_id": "///2/965/O4", "atom2_id": "///2/1065/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1803, "atom1_serNum": 17336, "atom2_serNum": 19483, "donAcc_type": "acceptable", "distance": 3.494, "atom1_id": "///2/966/O2'", "atom2_id": "///2/1066/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1804, "atom1_serNum": 17360, "atom2_serNum": 17462, "donAcc_type": "acceptable", "distance": 3.117, "atom1_id": "///2/967/O2", "atom2_id": "///2/972/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1805, "atom1_serNum": 17376, "atom2_serNum": 17458, "donAcc_type": "acceptable", "distance": 3.408, "atom1_id": "///2/968/O2'", "atom2_id": "///2/972/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1806, "atom1_serNum": 17387, "atom2_serNum": 17416, "donAcc_type": "acceptable", "distance": 3.409, "atom1_id": "///2/969/OP1", "atom2_id": "///2/970/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1807, "atom1_serNum": 17488, "atom2_serNum": 57827, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///2/973/O2", "atom2_id": "///P/55/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1808, "atom1_serNum": 17489, "atom2_serNum": 57827, "donAcc_type": "standard", "distance": 3.176, "atom1_id": "///2/973/N3", "atom2_id": "///P/55/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1809, "atom1_serNum": 17504, "atom2_serNum": 57735, "donAcc_type": "acceptable", "distance": 3.247, "atom1_id": "///2/974/O2'", "atom2_id": "///P/43/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1810, "atom1_serNum": 17520, "atom2_serNum": 57735, "donAcc_type": "acceptable", "distance": 3.490, "atom1_id": "///2/975/O4'", "atom2_id": "///P/43/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1811, "atom1_serNum": 17524, "atom2_serNum": 57778, "donAcc_type": "acceptable", "distance": 2.641, "atom1_id": "///2/975/O2'", "atom2_id": "///P/49/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1812, "atom1_serNum": 17534, "atom2_serNum": 57782, "donAcc_type": "standard", "distance": 3.053, "atom1_id": "///2/975/N2", "atom2_id": "///P/50/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1813, "atom1_serNum": 17633, "atom2_serNum": 17651, "donAcc_type": "acceptable", "distance": 3.274, "atom1_id": "///2/980/O2'", "atom2_id": "///2/981/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1814, "atom1_serNum": 17655, "atom2_serNum": 17673, "donAcc_type": "acceptable", "distance": 2.951, "atom1_id": "///2/981/O2'", "atom2_id": "///2/982/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1815, "atom1_serNum": 17677, "atom2_serNum": 17696, "donAcc_type": "acceptable", "distance": 3.076, "atom1_id": "///2/982/O2'", "atom2_id": "///2/983/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1816, "atom1_serNum": 17687, "atom2_serNum": 19038, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///2/982/N2", "atom2_id": "///2/1045/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1817, "atom1_serNum": 17691, "atom2_serNum": 19631, "donAcc_type": "acceptable", "distance": 2.883, "atom1_id": "///2/983/OP1", "atom2_id": "///2/1073/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1818, "atom1_serNum": 17722, "atom2_serNum": 17738, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///2/984/O2'", "atom2_id": "///2/985/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1819, "atom1_serNum": 17738, "atom2_serNum": 58432, "donAcc_type": "questionable", "distance": 2.671, "atom1_id": "///2/985/O4'", "atom2_id": "///P/138/OD2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1820, "atom1_serNum": 17742, "atom2_serNum": 18092, "donAcc_type": "acceptable", "distance": 3.203, "atom1_id": "///2/985/O2'", "atom2_id": "///2/1001/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1821, "atom1_serNum": 17742, "atom2_serNum": 18107, "donAcc_type": "acceptable", "distance": 3.052, "atom1_id": "///2/985/O2'", "atom2_id": "///2/1002/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1822, "atom1_serNum": 17757, "atom2_serNum": 17817, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///2/986/OP2", "atom2_id": "///2/988/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1823, "atom1_serNum": 17761, "atom2_serNum": 58422, "donAcc_type": "questionable", "distance": 2.884, "atom1_id": "///2/986/O4'", "atom2_id": "///P/137/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1824, "atom1_serNum": 17769, "atom2_serNum": 58424, "donAcc_type": "acceptable", "distance": 2.562, "atom1_id": "///2/986/N7", "atom2_id": "///P/137/OG", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1825, "atom1_serNum": 17779, "atom2_serNum": 17830, "donAcc_type": "acceptable", "distance": 3.004, "atom1_id": "///2/987/OP1", "atom2_id": "///2/989/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1826, "atom1_serNum": 17779, "atom2_serNum": 69424, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///2/987/OP1", "atom2_id": "///b/32/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1827, "atom1_serNum": 17780, "atom2_serNum": 17817, "donAcc_type": "standard", "distance": 3.188, "atom1_id": "///2/987/OP2", "atom2_id": "///2/988/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1828, "atom1_serNum": 17801, "atom2_serNum": 38701, "donAcc_type": "standard", "distance": 3.308, "atom1_id": "///2/988/OP1", "atom2_id": "///C/116/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1829, "atom1_serNum": 17802, "atom2_serNum": 17830, "donAcc_type": "acceptable", "distance": 2.781, "atom1_id": "///2/988/OP2", "atom2_id": "///2/989/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1830, "atom1_serNum": 17802, "atom2_serNum": 69726, "donAcc_type": "standard", "distance": 3.545, "atom1_id": "///2/988/OP2", "atom2_id": "///b/70/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1831, "atom1_serNum": 17810, "atom2_serNum": 38719, "donAcc_type": "acceptable", "distance": 2.459, "atom1_id": "///2/988/O2'", "atom2_id": "///C/118/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1832, "atom1_serNum": 17821, "atom2_serNum": 39028, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///2/989/OP1", "atom2_id": "///C/155/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1833, "atom1_serNum": 17822, "atom2_serNum": 38702, "donAcc_type": "standard", "distance": 3.505, "atom1_id": "///2/989/OP2", "atom2_id": "///C/117/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1834, "atom1_serNum": 17822, "atom2_serNum": 39028, "donAcc_type": "acceptable", "distance": 2.272, "atom1_id": "///2/989/OP2", "atom2_id": "///C/155/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1835, "atom1_serNum": 17830, "atom2_serNum": 69424, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///2/989/O2'", "atom2_id": "///b/32/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1836, "atom1_serNum": 17834, "atom2_serNum": 69424, "donAcc_type": "standard", "distance": 3.107, "atom1_id": "///2/989/O2", "atom2_id": "///b/32/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1837, "atom1_serNum": 17841, "atom2_serNum": 38701, "donAcc_type": "standard", "distance": 3.516, "atom1_id": "///2/990/OP1", "atom2_id": "///C/116/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1838, "atom1_serNum": 17842, "atom2_serNum": 69463, "donAcc_type": "standard", "distance": 2.350, "atom1_id": "///2/990/OP2", "atom2_id": "///b/37/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1839, "atom1_serNum": 17850, "atom2_serNum": 17891, "donAcc_type": "acceptable", "distance": 3.582, "atom1_id": "///2/990/O2'", "atom2_id": "///2/992/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1840, "atom1_serNum": 17857, "atom2_serNum": 18100, "donAcc_type": "standard", "distance": 3.964, "atom1_id": "///2/990/N6", "atom2_id": "///2/1001/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1841, "atom1_serNum": 17858, "atom2_serNum": 18099, "donAcc_type": "standard", "distance": 3.826, "atom1_id": "///2/990/N1", "atom2_id": "///2/1001/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1842, "atom1_serNum": 17872, "atom2_serNum": 69262, "donAcc_type": "acceptable", "distance": 3.170, "atom1_id": "///2/991/O2'", "atom2_id": "///b/11/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1843, "atom1_serNum": 17899, "atom2_serNum": 69293, "donAcc_type": "standard", "distance": 3.409, "atom1_id": "///2/992/N7", "atom2_id": "///b/15/NE", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1844, "atom1_serNum": 17899, "atom2_serNum": 69296, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///2/992/N7", "atom2_id": "///b/15/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1845, "atom1_serNum": 17908, "atom2_serNum": 20874, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///2/993/OP1", "atom2_id": "///2/1131/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1846, "atom1_serNum": 17924, "atom2_serNum": 18079, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///2/993/O6", "atom2_id": "///2/1000/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1847, "atom1_serNum": 17925, "atom2_serNum": 18077, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/993/N1", "atom2_id": "///2/1000/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1848, "atom1_serNum": 17927, "atom2_serNum": 18076, "donAcc_type": "standard", "distance": 2.791, "atom1_id": "///2/993/N2", "atom2_id": "///2/1000/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1849, "atom1_serNum": 17944, "atom2_serNum": 18059, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///2/994/O2", "atom2_id": "///2/999/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1850, "atom1_serNum": 17945, "atom2_serNum": 18057, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/994/N3", "atom2_id": "///2/999/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1851, "atom1_serNum": 17947, "atom2_serNum": 18056, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///2/994/N4", "atom2_id": "///2/999/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1852, "atom1_serNum": 17947, "atom2_serNum": 69285, "donAcc_type": "standard", "distance": 3.513, "atom1_id": "///2/994/N4", "atom2_id": "///b/14/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1853, "atom1_serNum": 17958, "atom2_serNum": 57222, "donAcc_type": "standard", "distance": 3.260, "atom1_id": "///2/995/O3'", "atom2_id": "///O/114/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1854, "atom1_serNum": 17968, "atom2_serNum": 18019, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///2/995/N1", "atom2_id": "///2/998/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1855, "atom1_serNum": 17970, "atom2_serNum": 18019, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///2/995/N2", "atom2_id": "///2/998/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1856, "atom1_serNum": 17970, "atom2_serNum": 18031, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/995/N2", "atom2_id": "///2/998/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1857, "atom1_serNum": 17974, "atom2_serNum": 57222, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///2/996/OP1", "atom2_id": "///O/114/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1858, "atom1_serNum": 17990, "atom2_serNum": 18748, "donAcc_type": "acceptable", "distance": 3.985, "atom1_id": "///2/996/N6", "atom2_id": "///2/1032/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1859, "atom1_serNum": 18013, "atom2_serNum": 18748, "donAcc_type": "acceptable", "distance": 3.010, "atom1_id": "///2/997/N1", "atom2_id": "///2/1032/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1860, "atom1_serNum": 18025, "atom2_serNum": 19825, "donAcc_type": "standard", "distance": 3.774, "atom1_id": "///2/998/O3'", "atom2_id": "///2/1082/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1861, "atom1_serNum": 18027, "atom2_serNum": 18768, "donAcc_type": "acceptable", "distance": 3.537, "atom1_id": "///2/998/O2'", "atom2_id": "///2/1033/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1862, "atom1_serNum": 18027, "atom2_serNum": 18787, "donAcc_type": "acceptable", "distance": 2.630, "atom1_id": "///2/998/O2'", "atom2_id": "///2/1034/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1863, "atom1_serNum": 18040, "atom2_serNum": 18791, "donAcc_type": "acceptable", "distance": 3.477, "atom1_id": "///2/999/OP1", "atom2_id": "///2/1034/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1864, "atom1_serNum": 18056, "atom2_serNum": 69289, "donAcc_type": "questionable", "distance": 2.700, "atom1_id": "///2/999/O6", "atom2_id": "///b/15/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1865, "atom1_serNum": 18064, "atom2_serNum": 69307, "donAcc_type": "acceptable", "distance": 2.954, "atom1_id": "///2/1000/OP2", "atom2_id": "///b/17/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1866, "atom1_serNum": 18079, "atom2_serNum": 69304, "donAcc_type": "standard", "distance": 3.666, "atom1_id": "///2/1000/N4", "atom2_id": "///b/17/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1867, "atom1_serNum": 18096, "atom2_serNum": 69326, "donAcc_type": "standard", "distance": 2.403, "atom1_id": "///2/1001/N7", "atom2_id": "///b/19/NE2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1868, "atom1_serNum": 18145, "atom2_serNum": 39115, "donAcc_type": "standard", "distance": 3.594, "atom1_id": "///2/1004/OP1", "atom2_id": "///C/165/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1869, "atom1_serNum": 18166, "atom2_serNum": 39087, "donAcc_type": "standard", "distance": 3.285, "atom1_id": "///2/1005/OP2", "atom2_id": "///C/162/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1870, "atom1_serNum": 18217, "atom2_serNum": 18233, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///2/1007/O2'", "atom2_id": "///2/1008/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1871, "atom1_serNum": 18281, "atom2_serNum": 18300, "donAcc_type": "acceptable", "distance": 3.189, "atom1_id": "///2/1010/O2'", "atom2_id": "///2/1011/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1872, "atom1_serNum": 18317, "atom2_serNum": 56336, "donAcc_type": "standard", "distance": 2.332, "atom1_id": "///2/1012/OP1", "atom2_id": "///O/3/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1873, "atom1_serNum": 18326, "atom2_serNum": 20828, "donAcc_type": "acceptable", "distance": 3.309, "atom1_id": "///2/1012/O2'", "atom2_id": "///2/1129/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1874, "atom1_serNum": 18339, "atom2_serNum": 20818, "donAcc_type": "acceptable", "distance": 3.149, "atom1_id": "///2/1013/OP1", "atom2_id": "///2/1129/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1875, "atom1_serNum": 18339, "atom2_serNum": 56385, "donAcc_type": "standard", "distance": 2.573, "atom1_id": "///2/1013/OP1", "atom2_id": "///O/11/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1876, "atom1_serNum": 18340, "atom2_serNum": 56398, "donAcc_type": "acceptable", "distance": 2.916, "atom1_id": "///2/1013/OP2", "atom2_id": "///O/12/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1877, "atom1_serNum": 18344, "atom2_serNum": 20828, "donAcc_type": "standard", "distance": 3.285, "atom1_id": "///2/1013/O4'", "atom2_id": "///2/1129/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1878, "atom1_serNum": 18348, "atom2_serNum": 20291, "donAcc_type": "acceptable", "distance": 3.139, "atom1_id": "///2/1013/O2'", "atom2_id": "///2/1104/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1879, "atom1_serNum": 18348, "atom2_serNum": 20302, "donAcc_type": "acceptable", "distance": 2.636, "atom1_id": "///2/1013/O2'", "atom2_id": "///2/1104/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1880, "atom1_serNum": 18348, "atom2_serNum": 20310, "donAcc_type": "acceptable", "distance": 3.485, "atom1_id": "///2/1013/O2'", "atom2_id": "///2/1105/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1881, "atom1_serNum": 18352, "atom2_serNum": 20291, "donAcc_type": "acceptable", "distance": 2.670, "atom1_id": "///2/1013/O2", "atom2_id": "///2/1104/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1882, "atom1_serNum": 18378, "atom2_serNum": 70401, "donAcc_type": "standard", "distance": 2.245, "atom1_id": "///2/1014/N2", "atom2_id": "///c/51/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1883, "atom1_serNum": 18382, "atom2_serNum": 70226, "donAcc_type": "questionable", "distance": 2.994, "atom1_id": "///2/1015/OP1", "atom2_id": "///c/29/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1884, "atom1_serNum": 18383, "atom2_serNum": 70153, "donAcc_type": "standard", "distance": 2.671, "atom1_id": "///2/1015/OP2", "atom2_id": "///c/20/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1885, "atom1_serNum": 18402, "atom2_serNum": 70233, "donAcc_type": "acceptable", "distance": 2.654, "atom1_id": "///2/1016/OP1", "atom2_id": "///c/30/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1886, "atom1_serNum": 18403, "atom2_serNum": 56414, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///2/1016/OP2", "atom2_id": "///O/15/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1887, "atom1_serNum": 18403, "atom2_serNum": 70153, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///2/1016/OP2", "atom2_id": "///c/20/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1888, "atom1_serNum": 18415, "atom2_serNum": 70233, "donAcc_type": "acceptable", "distance": 2.825, "atom1_id": "///2/1016/O2", "atom2_id": "///c/30/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1889, "atom1_serNum": 18423, "atom2_serNum": 56413, "donAcc_type": "acceptable", "distance": 2.589, "atom1_id": "///2/1017/OP2", "atom2_id": "///O/14/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1890, "atom1_serNum": 18427, "atom2_serNum": 56740, "donAcc_type": "standard", "distance": 3.350, "atom1_id": "///2/1017/O4'", "atom2_id": "///O/55/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1891, "atom1_serNum": 18431, "atom2_serNum": 56679, "donAcc_type": "acceptable", "distance": 3.394, "atom1_id": "///2/1017/O2'", "atom2_id": "///O/47/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1892, "atom1_serNum": 18462, "atom2_serNum": 56865, "donAcc_type": "standard", "distance": 3.518, "atom1_id": "///2/1019/OP1", "atom2_id": "///O/72/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1893, "atom1_serNum": 18483, "atom2_serNum": 56856, "donAcc_type": "standard", "distance": 2.292, "atom1_id": "///2/1020/OP2", "atom2_id": "///O/70/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1894, "atom1_serNum": 18504, "atom2_serNum": 57345, "donAcc_type": "acceptable", "distance": 3.973, "atom1_id": "///2/1021/OP1", "atom2_id": "///O/128/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1895, "atom1_serNum": 18533, "atom2_serNum": 18544, "donAcc_type": "acceptable", "distance": 2.612, "atom1_id": "///2/1022/O2'", "atom2_id": "///2/1023/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1896, "atom1_serNum": 18544, "atom2_serNum": 57309, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///2/1023/OP1", "atom2_id": "///O/124/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1897, "atom1_serNum": 18545, "atom2_serNum": 57309, "donAcc_type": "standard", "distance": 2.644, "atom1_id": "///2/1023/OP2", "atom2_id": "///O/124/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1898, "atom1_serNum": 18567, "atom2_serNum": 57309, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///2/1024/OP2", "atom2_id": "///O/124/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1899, "atom1_serNum": 18575, "atom2_serNum": 20008, "donAcc_type": "acceptable", "distance": 3.589, "atom1_id": "///2/1024/O2'", "atom2_id": "///2/1091/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1900, "atom1_serNum": 18575, "atom2_serNum": 21472, "donAcc_type": "acceptable", "distance": 3.447, "atom1_id": "///2/1024/O2'", "atom2_id": "///2/1159/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1901, "atom1_serNum": 18588, "atom2_serNum": 19992, "donAcc_type": "acceptable", "distance": 3.299, "atom1_id": "///2/1025/OP1", "atom2_id": "///2/1090/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1902, "atom1_serNum": 18593, "atom2_serNum": 21472, "donAcc_type": "standard", "distance": 3.816, "atom1_id": "///2/1025/O4'", "atom2_id": "///2/1159/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1903, "atom1_serNum": 18597, "atom2_serNum": 19979, "donAcc_type": "acceptable", "distance": 3.524, "atom1_id": "///2/1025/O2'", "atom2_id": "///2/1089/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1904, "atom1_serNum": 18597, "atom2_serNum": 21489, "donAcc_type": "acceptable", "distance": 3.626, "atom1_id": "///2/1025/O2'", "atom2_id": "///2/1160/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1905, "atom1_serNum": 18601, "atom2_serNum": 21485, "donAcc_type": "acceptable", "distance": 2.563, "atom1_id": "///2/1025/O2", "atom2_id": "///2/1160/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1906, "atom1_serNum": 18615, "atom2_serNum": 21505, "donAcc_type": "acceptable", "distance": 3.475, "atom1_id": "///2/1026/O3'", "atom2_id": "///2/1161/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1907, "atom1_serNum": 18704, "atom2_serNum": 18722, "donAcc_type": "acceptable", "distance": 3.165, "atom1_id": "///2/1030/O2'", "atom2_id": "///2/1031/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1908, "atom1_serNum": 18724, "atom2_serNum": 57200, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///2/1031/O3'", "atom2_id": "///O/112/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1909, "atom1_serNum": 18739, "atom2_serNum": 57200, "donAcc_type": "standard", "distance": 3.515, "atom1_id": "///2/1032/OP1", "atom2_id": "///O/112/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1910, "atom1_serNum": 18768, "atom2_serNum": 19805, "donAcc_type": "acceptable", "distance": 3.673, "atom1_id": "///2/1033/O2'", "atom2_id": "///2/1081/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1911, "atom1_serNum": 18776, "atom2_serNum": 19776, "donAcc_type": "acceptable", "distance": 2.243, "atom1_id": "///2/1033/N1", "atom2_id": "///2/1080/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1912, "atom1_serNum": 18778, "atom2_serNum": 19776, "donAcc_type": "acceptable", "distance": 2.905, "atom1_id": "///2/1033/N2", "atom2_id": "///2/1080/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1913, "atom1_serNum": 18778, "atom2_serNum": 19790, "donAcc_type": "standard", "distance": 3.988, "atom1_id": "///2/1033/N2", "atom2_id": "///2/1081/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1914, "atom1_serNum": 18778, "atom2_serNum": 19870, "donAcc_type": "standard", "distance": 3.451, "atom1_id": "///2/1033/N2", "atom2_id": "///2/1084/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1915, "atom1_serNum": 18795, "atom2_serNum": 19803, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///2/1034/N7", "atom2_id": "///2/1081/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1916, "atom1_serNum": 18798, "atom2_serNum": 19802, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///2/1034/N6", "atom2_id": "///2/1081/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1917, "atom1_serNum": 18801, "atom2_serNum": 35956, "donAcc_type": "acceptable", "distance": 3.241, "atom1_id": "///2/1034/N3", "atom2_id": "///2/1857/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1918, "atom1_serNum": 18809, "atom2_serNum": 35952, "donAcc_type": "questionable", "distance": 3.231, "atom1_id": "///2/1035/O4'", "atom2_id": "///2/1857/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1919, "atom1_serNum": 18813, "atom2_serNum": 35936, "donAcc_type": "acceptable", "distance": 2.478, "atom1_id": "///2/1035/O2'", "atom2_id": "///2/1856/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1920, "atom1_serNum": 18813, "atom2_serNum": 35940, "donAcc_type": "acceptable", "distance": 3.278, "atom1_id": "///2/1035/O2'", "atom2_id": "///2/1856/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1921, "atom1_serNum": 18820, "atom2_serNum": 19802, "donAcc_type": "standard", "distance": 2.559, "atom1_id": "///2/1035/N6", "atom2_id": "///2/1081/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1922, "atom1_serNum": 18823, "atom2_serNum": 35665, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///2/1035/N3", "atom2_id": "///2/1843/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1923, "atom1_serNum": 18831, "atom2_serNum": 35665, "donAcc_type": "standard", "distance": 3.859, "atom1_id": "///2/1036/O4'", "atom2_id": "///2/1843/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1924, "atom1_serNum": 18835, "atom2_serNum": 35678, "donAcc_type": "acceptable", "distance": 3.198, "atom1_id": "///2/1036/O2'", "atom2_id": "///2/1844/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1925, "atom1_serNum": 18835, "atom2_serNum": 35682, "donAcc_type": "acceptable", "distance": 2.261, "atom1_id": "///2/1036/O2'", "atom2_id": "///2/1844/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1926, "atom1_serNum": 18835, "atom2_serNum": 35923, "donAcc_type": "acceptable", "distance": 2.932, "atom1_id": "///2/1036/O2'", "atom2_id": "///2/1855/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1927, "atom1_serNum": 18842, "atom2_serNum": 19761, "donAcc_type": "standard", "distance": 3.787, "atom1_id": "///2/1036/N6", "atom2_id": "///2/1079/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1928, "atom1_serNum": 18845, "atom2_serNum": 35674, "donAcc_type": "questionable", "distance": 3.093, "atom1_id": "///2/1036/N3", "atom2_id": "///2/1844/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1929, "atom1_serNum": 18853, "atom2_serNum": 35678, "donAcc_type": "acceptable", "distance": 3.262, "atom1_id": "///2/1037/O4'", "atom2_id": "///2/1844/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1930, "atom1_serNum": 18857, "atom2_serNum": 21971, "donAcc_type": "acceptable", "distance": 3.929, "atom1_id": "///2/1037/O2'", "atom2_id": "///2/1182/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1931, "atom1_serNum": 18864, "atom2_serNum": 19743, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///2/1037/O6", "atom2_id": "///2/1078/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1932, "atom1_serNum": 18865, "atom2_serNum": 19741, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///2/1037/N1", "atom2_id": "///2/1078/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1933, "atom1_serNum": 18867, "atom2_serNum": 19740, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///2/1037/N2", "atom2_id": "///2/1078/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1934, "atom1_serNum": 18867, "atom2_serNum": 21947, "donAcc_type": "standard", "distance": 3.418, "atom1_id": "///2/1037/N2", "atom2_id": "///2/1181/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1935, "atom1_serNum": 18880, "atom2_serNum": 18896, "donAcc_type": "acceptable", "distance": 3.212, "atom1_id": "///2/1038/O2'", "atom2_id": "///2/1039/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1936, "atom1_serNum": 18880, "atom2_serNum": 21924, "donAcc_type": "acceptable", "distance": 3.213, "atom1_id": "///2/1038/O2'", "atom2_id": "///2/1180/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1937, "atom1_serNum": 18884, "atom2_serNum": 21926, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///2/1038/O2", "atom2_id": "///2/1180/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1938, "atom1_serNum": 18885, "atom2_serNum": 19722, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///2/1038/N3", "atom2_id": "///2/1077/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1939, "atom1_serNum": 18887, "atom2_serNum": 19721, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///2/1038/O4", "atom2_id": "///2/1077/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1940, "atom1_serNum": 18904, "atom2_serNum": 19701, "donAcc_type": "standard", "distance": 3.147, "atom1_id": "///2/1039/O2", "atom2_id": "///2/1076/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1941, "atom1_serNum": 18905, "atom2_serNum": 19699, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1039/N3", "atom2_id": "///2/1076/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1942, "atom1_serNum": 18907, "atom2_serNum": 19698, "donAcc_type": "standard", "distance": 2.609, "atom1_id": "///2/1039/N4", "atom2_id": "///2/1076/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1943, "atom1_serNum": 18927, "atom2_serNum": 19678, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///2/1040/O6", "atom2_id": "///2/1075/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1944, "atom1_serNum": 18928, "atom2_serNum": 19676, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/1040/N1", "atom2_id": "///2/1075/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1945, "atom1_serNum": 18930, "atom2_serNum": 19675, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///2/1040/N2", "atom2_id": "///2/1075/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1946, "atom1_serNum": 18950, "atom2_serNum": 19658, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///2/1041/O6", "atom2_id": "///2/1074/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1947, "atom1_serNum": 18951, "atom2_serNum": 19656, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/1041/N1", "atom2_id": "///2/1074/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1948, "atom1_serNum": 18953, "atom2_serNum": 19655, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///2/1041/N2", "atom2_id": "///2/1074/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1949, "atom1_serNum": 18973, "atom2_serNum": 19638, "donAcc_type": "standard", "distance": 3.612, "atom1_id": "///2/1042/N6", "atom2_id": "///2/1073/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1950, "atom1_serNum": 18974, "atom2_serNum": 19636, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///2/1042/N1", "atom2_id": "///2/1073/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1951, "atom1_serNum": 19054, "atom2_serNum": 58444, "donAcc_type": "acceptable", "distance": 2.924, "atom1_id": "///2/1046/O2'", "atom2_id": "///P/140/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1952, "atom1_serNum": 19054, "atom2_serNum": 58449, "donAcc_type": "acceptable", "distance": 3.900, "atom1_id": "///2/1046/O2'", "atom2_id": "///P/141/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1953, "atom1_serNum": 19061, "atom2_serNum": 19616, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///2/1046/O4", "atom2_id": "///2/1072/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1954, "atom1_serNum": 19072, "atom2_serNum": 58477, "donAcc_type": "standard", "distance": 3.209, "atom1_id": "///2/1047/O3'", "atom2_id": "///P/144/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1955, "atom1_serNum": 19074, "atom2_serNum": 58480, "donAcc_type": "acceptable", "distance": 3.599, "atom1_id": "///2/1047/O2'", "atom2_id": "///P/144/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1956, "atom1_serNum": 19078, "atom2_serNum": 19598, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///2/1047/O2", "atom2_id": "///2/1071/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1957, "atom1_serNum": 19081, "atom2_serNum": 19595, "donAcc_type": "standard", "distance": 3.658, "atom1_id": "///2/1047/N4", "atom2_id": "///2/1071/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1958, "atom1_serNum": 19085, "atom2_serNum": 58477, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///2/1048/OP1", "atom2_id": "///P/144/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1959, "atom1_serNum": 19094, "atom2_serNum": 19110, "donAcc_type": "acceptable", "distance": 2.931, "atom1_id": "///2/1048/O2'", "atom2_id": "///2/1049/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1960, "atom1_serNum": 19094, "atom2_serNum": 35913, "donAcc_type": "acceptable", "distance": 3.647, "atom1_id": "///2/1048/O2'", "atom2_id": "///2/1855/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1961, "atom1_serNum": 19102, "atom2_serNum": 19538, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///2/1048/N1", "atom2_id": "///2/1069/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1962, "atom1_serNum": 19104, "atom2_serNum": 19570, "donAcc_type": "standard", "distance": 2.803, "atom1_id": "///2/1048/N2", "atom2_id": "///2/1070/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1963, "atom1_serNum": 19105, "atom2_serNum": 19573, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///2/1048/N3", "atom2_id": "///2/1070/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1964, "atom1_serNum": 19108, "atom2_serNum": 35893, "donAcc_type": "acceptable", "distance": 3.262, "atom1_id": "///2/1049/OP1", "atom2_id": "///2/1854/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1965, "atom1_serNum": 19109, "atom2_serNum": 19531, "donAcc_type": "standard", "distance": 2.520, "atom1_id": "///2/1049/OP2", "atom2_id": "///2/1068/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1966, "atom1_serNum": 19109, "atom2_serNum": 19533, "donAcc_type": "standard", "distance": 3.009, "atom1_id": "///2/1049/OP2", "atom2_id": "///2/1068/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1967, "atom1_serNum": 19117, "atom2_serNum": 35897, "donAcc_type": "acceptable", "distance": 2.934, "atom1_id": "///2/1049/O2'", "atom2_id": "///2/1854/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1968, "atom1_serNum": 19121, "atom2_serNum": 19551, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///2/1049/N7", "atom2_id": "///2/1069/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1969, "atom1_serNum": 19124, "atom2_serNum": 19550, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///2/1049/N6", "atom2_id": "///2/1069/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1970, "atom1_serNum": 19130, "atom2_serNum": 35730, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///2/1050/OP1", "atom2_id": "///2/1846/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1971, "atom1_serNum": 19143, "atom2_serNum": 19533, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///2/1050/N7", "atom2_id": "///2/1068/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1972, "atom1_serNum": 19146, "atom2_serNum": 19523, "donAcc_type": "acceptable", "distance": 2.849, "atom1_id": "///2/1050/N6", "atom2_id": "///2/1068/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1973, "atom1_serNum": 19146, "atom2_serNum": 19534, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///2/1050/N6", "atom2_id": "///2/1068/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1974, "atom1_serNum": 19152, "atom2_serNum": 35743, "donAcc_type": "acceptable", "distance": 3.653, "atom1_id": "///2/1051/OP1", "atom2_id": "///2/1847/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1975, "atom1_serNum": 19168, "atom2_serNum": 19510, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///2/1051/O6", "atom2_id": "///2/1067/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1976, "atom1_serNum": 19169, "atom2_serNum": 19508, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/1051/N1", "atom2_id": "///2/1067/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1977, "atom1_serNum": 19171, "atom2_serNum": 19507, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///2/1051/N2", "atom2_id": "///2/1067/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1978, "atom1_serNum": 19191, "atom2_serNum": 19490, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///2/1052/N6", "atom2_id": "///2/1066/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1979, "atom1_serNum": 19192, "atom2_serNum": 19488, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///2/1052/N1", "atom2_id": "///2/1066/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1980, "atom1_serNum": 19210, "atom2_serNum": 19470, "donAcc_type": "standard", "distance": 2.697, "atom1_id": "///2/1053/O2", "atom2_id": "///2/1065/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1981, "atom1_serNum": 19211, "atom2_serNum": 19468, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/1053/N3", "atom2_id": "///2/1065/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1982, "atom1_serNum": 19213, "atom2_serNum": 19233, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///2/1053/N4", "atom2_id": "///2/1054/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1983, "atom1_serNum": 19213, "atom2_serNum": 19467, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///2/1053/N4", "atom2_id": "///2/1065/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1984, "atom1_serNum": 19226, "atom2_serNum": 19242, "donAcc_type": "acceptable", "distance": 2.713, "atom1_id": "///2/1054/O2'", "atom2_id": "///2/1055/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1985, "atom1_serNum": 19233, "atom2_serNum": 19447, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///2/1054/O6", "atom2_id": "///2/1064/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1986, "atom1_serNum": 19234, "atom2_serNum": 19445, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1054/N1", "atom2_id": "///2/1064/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1987, "atom1_serNum": 19236, "atom2_serNum": 19444, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///2/1054/N2", "atom2_id": "///2/1064/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1988, "atom1_serNum": 19249, "atom2_serNum": 19267, "donAcc_type": "acceptable", "distance": 3.004, "atom1_id": "///2/1055/O2'", "atom2_id": "///2/1056/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1989, "atom1_serNum": 19256, "atom2_serNum": 19370, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///2/1055/N6", "atom2_id": "///2/1061/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1990, "atom1_serNum": 19257, "atom2_serNum": 19427, "donAcc_type": "standard", "distance": 3.083, "atom1_id": "///2/1055/N1", "atom2_id": "///2/1063/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1991, "atom1_serNum": 19275, "atom2_serNum": 19427, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///2/1056/O2", "atom2_id": "///2/1063/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1992, "atom1_serNum": 19278, "atom2_serNum": 19356, "donAcc_type": "acceptable", "distance": 3.992, "atom1_id": "///2/1056/O4", "atom2_id": "///2/1060/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1993, "atom1_serNum": 19291, "atom2_serNum": 19337, "donAcc_type": "acceptable", "distance": 2.687, "atom1_id": "///2/1057/O2'", "atom2_id": "///2/1059/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1994, "atom1_serNum": 19318, "atom2_serNum": 35372, "donAcc_type": "standard", "distance": 3.861, "atom1_id": "///2/1058/N6", "atom2_id": "///2/1830/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1995, "atom1_serNum": 19319, "atom2_serNum": 35350, "donAcc_type": "questionable", "distance": 3.086, "atom1_id": "///2/1058/N1", "atom2_id": "///2/1829/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1996, "atom1_serNum": 19341, "atom2_serNum": 35372, "donAcc_type": "standard", "distance": 3.743, "atom1_id": "///2/1059/N1", "atom2_id": "///2/1830/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1997, "atom1_serNum": 19343, "atom2_serNum": 35356, "donAcc_type": "standard", "distance": 3.270, "atom1_id": "///2/1059/N2", "atom2_id": "///2/1829/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1998, "atom1_serNum": 19343, "atom2_serNum": 35358, "donAcc_type": "acceptable", "distance": 3.193, "atom1_id": "///2/1059/N2", "atom2_id": "///2/1829/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1999, "atom1_serNum": 19356, "atom2_serNum": 19402, "donAcc_type": "acceptable", "distance": 2.550, "atom1_id": "///2/1060/O2'", "atom2_id": "///2/1062/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2000, "atom1_serNum": 19389, "atom2_serNum": 35753, "donAcc_type": "standard", "distance": 3.671, "atom1_id": "///2/1062/OP1", "atom2_id": "///2/1847/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2001, "atom1_serNum": 19396, "atom2_serNum": 35873, "donAcc_type": "acceptable", "distance": 3.381, "atom1_id": "///2/1062/O3'", "atom2_id": "///2/1853/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2002, "atom1_serNum": 19398, "atom2_serNum": 35562, "donAcc_type": "acceptable", "distance": 2.391, "atom1_id": "///2/1062/O2'", "atom2_id": "///2/1838/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2003, "atom1_serNum": 19398, "atom2_serNum": 35871, "donAcc_type": "acceptable", "distance": 3.290, "atom1_id": "///2/1062/O2'", "atom2_id": "///2/1853/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2004, "atom1_serNum": 19420, "atom2_serNum": 35551, "donAcc_type": "acceptable", "distance": 3.568, "atom1_id": "///2/1063/O2'", "atom2_id": "///2/1838/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2005, "atom1_serNum": 19420, "atom2_serNum": 58525, "donAcc_type": "acceptable", "distance": 2.856, "atom1_id": "///2/1063/O2'", "atom2_id": "///P/150/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2006, "atom1_serNum": 19475, "atom2_serNum": 58476, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///2/1066/OP2", "atom2_id": "///P/143/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2007, "atom1_serNum": 19603, "atom2_serNum": 19638, "donAcc_type": "questionable", "distance": 3.277, "atom1_id": "///2/1072/OP2", "atom2_id": "///2/1073/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2008, "atom1_serNum": 19662, "atom2_serNum": 57161, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///2/1075/OP1", "atom2_id": "///O/107/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2009, "atom1_serNum": 19682, "atom2_serNum": 57152, "donAcc_type": "standard", "distance": 3.098, "atom1_id": "///2/1076/OP1", "atom2_id": "///O/106/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2010, "atom1_serNum": 19752, "atom2_serNum": 21946, "donAcc_type": "standard", "distance": 3.957, "atom1_id": "///2/1079/O4'", "atom2_id": "///2/1181/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2011, "atom1_serNum": 19756, "atom2_serNum": 21968, "donAcc_type": "acceptable", "distance": 3.270, "atom1_id": "///2/1079/O2'", "atom2_id": "///2/1182/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2012, "atom1_serNum": 19756, "atom2_serNum": 21969, "donAcc_type": "acceptable", "distance": 3.337, "atom1_id": "///2/1079/O2'", "atom2_id": "///2/1182/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2013, "atom1_serNum": 19789, "atom2_serNum": 22005, "donAcc_type": "acceptable", "distance": 3.037, "atom1_id": "///2/1081/OP1", "atom2_id": "///2/1184/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2014, "atom1_serNum": 19790, "atom2_serNum": 19869, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///2/1081/OP2", "atom2_id": "///2/1084/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2015, "atom1_serNum": 19798, "atom2_serNum": 35655, "donAcc_type": "acceptable", "distance": 2.902, "atom1_id": "///2/1081/O2'", "atom2_id": "///2/1843/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2016, "atom1_serNum": 19810, "atom2_serNum": 19869, "donAcc_type": "standard", "distance": 3.911, "atom1_id": "///2/1082/OP2", "atom2_id": "///2/1084/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2017, "atom1_serNum": 19818, "atom2_serNum": 35635, "donAcc_type": "acceptable", "distance": 2.180, "atom1_id": "///2/1082/O2'", "atom2_id": "///2/1842/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2018, "atom1_serNum": 19840, "atom2_serNum": 19853, "donAcc_type": "acceptable", "distance": 2.971, "atom1_id": "///2/1083/O2'", "atom2_id": "///2/1084/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2019, "atom1_serNum": 19840, "atom2_serNum": 35989, "donAcc_type": "acceptable", "distance": 2.815, "atom1_id": "///2/1083/O2'", "atom2_id": "///2/1858/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2020, "atom1_serNum": 19840, "atom2_serNum": 35998, "donAcc_type": "acceptable", "distance": 3.530, "atom1_id": "///2/1083/O2'", "atom2_id": "///2/1859/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2021, "atom1_serNum": 19844, "atom2_serNum": 35615, "donAcc_type": "acceptable", "distance": 2.319, "atom1_id": "///2/1083/N7", "atom2_id": "///2/1841/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2022, "atom1_serNum": 19847, "atom2_serNum": 35615, "donAcc_type": "acceptable", "distance": 3.334, "atom1_id": "///2/1083/N6", "atom2_id": "///2/1841/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2023, "atom1_serNum": 19850, "atom2_serNum": 36002, "donAcc_type": "acceptable", "distance": 3.011, "atom1_id": "///2/1083/N3", "atom2_id": "///2/1859/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2024, "atom1_serNum": 19853, "atom2_serNum": 35979, "donAcc_type": "acceptable", "distance": 2.776, "atom1_id": "///2/1084/OP1", "atom2_id": "///2/1858/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2025, "atom1_serNum": 19862, "atom2_serNum": 19876, "donAcc_type": "acceptable", "distance": 3.030, "atom1_id": "///2/1084/O2'", "atom2_id": "///2/1085/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2026, "atom1_serNum": 19880, "atom2_serNum": 19941, "donAcc_type": "questionable", "distance": 2.953, "atom1_id": "///2/1085/O4'", "atom2_id": "///2/1088/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2027, "atom1_serNum": 19888, "atom2_serNum": 36056, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///2/1085/O2", "atom2_id": "///2/1861/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2028, "atom1_serNum": 19889, "atom2_serNum": 36054, "donAcc_type": "standard", "distance": 2.718, "atom1_id": "///2/1085/N3", "atom2_id": "///2/1861/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2029, "atom1_serNum": 19891, "atom2_serNum": 36053, "donAcc_type": "standard", "distance": 2.467, "atom1_id": "///2/1085/N4", "atom2_id": "///2/1861/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2030, "atom1_serNum": 19914, "atom2_serNum": 21262, "donAcc_type": "standard", "distance": 3.436, "atom1_id": "///2/1086/N2", "atom2_id": "///2/1150/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2031, "atom1_serNum": 19919, "atom2_serNum": 69242, "donAcc_type": "questionable", "distance": 3.293, "atom1_id": "///2/1087/OP2", "atom2_id": "///b/8/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2032, "atom1_serNum": 19949, "atom2_serNum": 19960, "donAcc_type": "acceptable", "distance": 2.723, "atom1_id": "///2/1088/O2'", "atom2_id": "///2/1089/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2033, "atom1_serNum": 19954, "atom2_serNum": 21275, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///2/1088/N3", "atom2_id": "///2/1150/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2034, "atom1_serNum": 19979, "atom2_serNum": 21489, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///2/1089/N2", "atom2_id": "///2/1160/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2035, "atom1_serNum": 19996, "atom2_serNum": 21472, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///2/1090/O2", "atom2_id": "///2/1159/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2036, "atom1_serNum": 19997, "atom2_serNum": 21470, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1090/N3", "atom2_id": "///2/1159/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2037, "atom1_serNum": 19999, "atom2_serNum": 21469, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///2/1090/N4", "atom2_id": "///2/1159/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2038, "atom1_serNum": 20003, "atom2_serNum": 56380, "donAcc_type": "standard", "distance": 3.230, "atom1_id": "///2/1091/OP1", "atom2_id": "///O/9/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2039, "atom1_serNum": 20012, "atom2_serNum": 65420, "donAcc_type": "acceptable", "distance": 2.512, "atom1_id": "///2/1091/O2'", "atom2_id": "///X/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2040, "atom1_serNum": 20016, "atom2_serNum": 21449, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///2/1091/O2", "atom2_id": "///2/1158/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2041, "atom1_serNum": 20017, "atom2_serNum": 21447, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/1091/N3", "atom2_id": "///2/1158/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2042, "atom1_serNum": 20019, "atom2_serNum": 21446, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///2/1091/N4", "atom2_id": "///2/1158/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2043, "atom1_serNum": 20023, "atom2_serNum": 56323, "donAcc_type": "standard", "distance": 2.708, "atom1_id": "///2/1092/OP1", "atom2_id": "///O/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2044, "atom1_serNum": 20028, "atom2_serNum": 65420, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///2/1092/O4'", "atom2_id": "///X/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2045, "atom1_serNum": 20062, "atom2_serNum": 21323, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///2/1093/N6", "atom2_id": "///2/1152/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2046, "atom1_serNum": 20063, "atom2_serNum": 21321, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///2/1093/N1", "atom2_id": "///2/1152/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2047, "atom1_serNum": 20068, "atom2_serNum": 65633, "donAcc_type": "standard", "distance": 3.444, "atom1_id": "///2/1094/OP1", "atom2_id": "///X/28/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2048, "atom1_serNum": 20077, "atom2_serNum": 20093, "donAcc_type": "acceptable", "distance": 2.910, "atom1_id": "///2/1094/O2'", "atom2_id": "///2/1095/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2049, "atom1_serNum": 20081, "atom2_serNum": 21303, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///2/1094/O2", "atom2_id": "///2/1151/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2050, "atom1_serNum": 20081, "atom2_serNum": 65533, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///2/1094/O2", "atom2_id": "///X/16/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2051, "atom1_serNum": 20082, "atom2_serNum": 21301, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///2/1094/N3", "atom2_id": "///2/1151/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2052, "atom1_serNum": 20084, "atom2_serNum": 21300, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///2/1094/N4", "atom2_id": "///2/1151/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2053, "atom1_serNum": 20097, "atom2_serNum": 65566, "donAcc_type": "acceptable", "distance": 3.102, "atom1_id": "///2/1095/O2'", "atom2_id": "///X/20/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2054, "atom1_serNum": 20101, "atom2_serNum": 21256, "donAcc_type": "standard", "distance": 3.433, "atom1_id": "///2/1095/O2", "atom2_id": "///2/1149/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2055, "atom1_serNum": 20104, "atom2_serNum": 21257, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///2/1095/N4", "atom2_id": "///2/1149/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2056, "atom1_serNum": 20108, "atom2_serNum": 65580, "donAcc_type": "standard", "distance": 3.660, "atom1_id": "///2/1096/OP1", "atom2_id": "///X/22/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2057, "atom1_serNum": 20110, "atom2_serNum": 65566, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///2/1096/O5'", "atom2_id": "///X/20/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2058, "atom1_serNum": 20124, "atom2_serNum": 20979, "donAcc_type": "questionable", "distance": 3.059, "atom1_id": "///2/1096/O6", "atom2_id": "///2/1136/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2059, "atom1_serNum": 20125, "atom2_serNum": 20977, "donAcc_type": "questionable", "distance": 3.259, "atom1_id": "///2/1096/N1", "atom2_id": "///2/1136/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2060, "atom1_serNum": 20127, "atom2_serNum": 20976, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///2/1096/N2", "atom2_id": "///2/1136/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2061, "atom1_serNum": 20147, "atom2_serNum": 20959, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///2/1097/O6", "atom2_id": "///2/1135/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2062, "atom1_serNum": 20148, "atom2_serNum": 20957, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///2/1097/N1", "atom2_id": "///2/1135/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2063, "atom1_serNum": 20150, "atom2_serNum": 20956, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///2/1097/N2", "atom2_id": "///2/1135/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2064, "atom1_serNum": 20167, "atom2_serNum": 20939, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///2/1098/O2", "atom2_id": "///2/1134/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2065, "atom1_serNum": 20168, "atom2_serNum": 20937, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///2/1098/N3", "atom2_id": "///2/1134/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2066, "atom1_serNum": 20170, "atom2_serNum": 20936, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///2/1098/N4", "atom2_id": "///2/1134/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2067, "atom1_serNum": 20190, "atom2_serNum": 20915, "donAcc_type": "questionable", "distance": 3.173, "atom1_id": "///2/1099/O6", "atom2_id": "///2/1133/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2068, "atom1_serNum": 20214, "atom2_serNum": 20894, "donAcc_type": "standard", "distance": 3.671, "atom1_id": "///2/1100/N1", "atom2_id": "///2/1132/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2069, "atom1_serNum": 20219, "atom2_serNum": 38991, "donAcc_type": "standard", "distance": 3.891, "atom1_id": "///2/1101/OP1", "atom2_id": "///C/151/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2070, "atom1_serNum": 20232, "atom2_serNum": 20874, "donAcc_type": "standard", "distance": 3.700, "atom1_id": "///2/1101/O2", "atom2_id": "///2/1131/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2071, "atom1_serNum": 20235, "atom2_serNum": 20255, "donAcc_type": "questionable", "distance": 2.878, "atom1_id": "///2/1101/O4", "atom2_id": "///2/1102/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2072, "atom1_serNum": 20239, "atom2_serNum": 39009, "donAcc_type": "acceptable", "distance": 3.439, "atom1_id": "///2/1102/OP1", "atom2_id": "///C/153/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2073, "atom1_serNum": 20262, "atom2_serNum": 39042, "donAcc_type": "standard", "distance": 2.249, "atom1_id": "///2/1103/OP1", "atom2_id": "///C/157/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2074, "atom1_serNum": 20275, "atom2_serNum": 20828, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///2/1103/O2", "atom2_id": "///2/1129/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2075, "atom1_serNum": 20276, "atom2_serNum": 20826, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/1103/N3", "atom2_id": "///2/1129/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2076, "atom1_serNum": 20278, "atom2_serNum": 20825, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///2/1103/N4", "atom2_id": "///2/1129/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2077, "atom1_serNum": 20298, "atom2_serNum": 20805, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///2/1104/O6", "atom2_id": "///2/1128/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2078, "atom1_serNum": 20299, "atom2_serNum": 20803, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1104/N1", "atom2_id": "///2/1128/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2079, "atom1_serNum": 20301, "atom2_serNum": 20802, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///2/1104/N2", "atom2_id": "///2/1128/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2080, "atom1_serNum": 20321, "atom2_serNum": 20785, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///2/1105/O6", "atom2_id": "///2/1127/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2081, "atom1_serNum": 20322, "atom2_serNum": 20783, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///2/1105/N1", "atom2_id": "///2/1127/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2082, "atom1_serNum": 20324, "atom2_serNum": 20782, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///2/1105/N2", "atom2_id": "///2/1127/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2083, "atom1_serNum": 20328, "atom2_serNum": 70520, "donAcc_type": "standard", "distance": 3.114, "atom1_id": "///2/1106/OP1", "atom2_id": "///c/70/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2084, "atom1_serNum": 20341, "atom2_serNum": 20763, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///2/1106/O2", "atom2_id": "///2/1126/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2085, "atom1_serNum": 20341, "atom2_serNum": 20765, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "///2/1106/O2", "atom2_id": "///2/1126/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2086, "atom1_serNum": 20342, "atom2_serNum": 20762, "donAcc_type": "questionable", "distance": 2.871, "atom1_id": "///2/1106/N3", "atom2_id": "///2/1126/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2087, "atom1_serNum": 20344, "atom2_serNum": 20762, "donAcc_type": "standard", "distance": 3.387, "atom1_id": "///2/1106/N4", "atom2_id": "///2/1126/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2088, "atom1_serNum": 20364, "atom2_serNum": 20742, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///2/1107/O6", "atom2_id": "///2/1125/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2089, "atom1_serNum": 20365, "atom2_serNum": 20740, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///2/1107/N1", "atom2_id": "///2/1125/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2090, "atom1_serNum": 20367, "atom2_serNum": 20739, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///2/1107/N2", "atom2_id": "///2/1125/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2091, "atom1_serNum": 20390, "atom2_serNum": 20719, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///2/1108/N2", "atom2_id": "///2/1124/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2092, "atom1_serNum": 20390, "atom2_serNum": 20720, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///2/1108/N2", "atom2_id": "///2/1124/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2093, "atom1_serNum": 20410, "atom2_serNum": 20719, "donAcc_type": "standard", "distance": 2.602, "atom1_id": "///2/1109/N4", "atom2_id": "///2/1124/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2094, "atom1_serNum": 20431, "atom2_serNum": 20699, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///2/1110/N1", "atom2_id": "///2/1123/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2095, "atom1_serNum": 20431, "atom2_serNum": 20700, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///2/1110/N1", "atom2_id": "///2/1123/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2096, "atom1_serNum": 20433, "atom2_serNum": 20699, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/1110/N2", "atom2_id": "///2/1123/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2097, "atom1_serNum": 20451, "atom2_serNum": 20681, "donAcc_type": "standard", "distance": 2.834, "atom1_id": "///2/1111/N3", "atom2_id": "///2/1122/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2098, "atom1_serNum": 20453, "atom2_serNum": 20680, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///2/1111/O4", "atom2_id": "///2/1122/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2099, "atom1_serNum": 20470, "atom2_serNum": 20657, "donAcc_type": "questionable", "distance": 2.263, "atom1_id": "///2/1112/O2", "atom2_id": "///2/1121/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2100, "atom1_serNum": 20470, "atom2_serNum": 20658, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///2/1112/O2", "atom2_id": "///2/1121/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2101, "atom1_serNum": 20471, "atom2_serNum": 20657, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///2/1112/N3", "atom2_id": "///2/1121/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2102, "atom1_serNum": 20477, "atom2_serNum": 20504, "donAcc_type": "questionable", "distance": 2.831, "atom1_id": "///2/1113/OP1", "atom2_id": "///2/1114/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2103, "atom1_serNum": 20477, "atom2_serNum": 78038, "donAcc_type": "standard", "distance": 3.310, "atom1_id": "///2/1113/OP1", "atom2_id": "///z/295/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2104, "atom1_serNum": 20478, "atom2_serNum": 20508, "donAcc_type": "acceptable", "distance": 3.078, "atom1_id": "///2/1113/OP2", "atom2_id": "///2/1114/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2105, "atom1_serNum": 20493, "atom2_serNum": 20637, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///2/1113/N6", "atom2_id": "///2/1120/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2106, "atom1_serNum": 20494, "atom2_serNum": 20635, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///2/1113/N1", "atom2_id": "///2/1120/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2107, "atom1_serNum": 20499, "atom2_serNum": 77369, "donAcc_type": "acceptable", "distance": 3.215, "atom1_id": "///2/1114/OP1", "atom2_id": "///z/264/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2108, "atom1_serNum": 20520, "atom2_serNum": 77518, "donAcc_type": "acceptable", "distance": 2.790, "atom1_id": "///2/1115/OP2", "atom2_id": "///z/271/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2109, "atom1_serNum": 20521, "atom2_serNum": 77518, "donAcc_type": "acceptable", "distance": 3.122, "atom1_id": "///2/1115/O5'", "atom2_id": "///z/271/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2110, "atom1_serNum": 20528, "atom2_serNum": 77516, "donAcc_type": "acceptable", "distance": 3.640, "atom1_id": "///2/1115/O2'", "atom2_id": "///z/271/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2111, "atom1_serNum": 20533, "atom2_serNum": 75682, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/1115/N3", "atom2_id": "///z/136/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2112, "atom1_serNum": 20533, "atom2_serNum": 78057, "donAcc_type": "standard", "distance": 3.070, "atom1_id": "///2/1115/N3", "atom2_id": "///z/296/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2113, "atom1_serNum": 20535, "atom2_serNum": 75681, "donAcc_type": "standard", "distance": 3.011, "atom1_id": "///2/1115/O4", "atom2_id": "///z/136/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2114, "atom1_serNum": 20548, "atom2_serNum": 20564, "donAcc_type": "acceptable", "distance": 3.250, "atom1_id": "///2/1116/O2'", "atom2_id": "///2/1117/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2115, "atom1_serNum": 20552, "atom2_serNum": 77465, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///2/1116/O2", "atom2_id": "///z/268/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2116, "atom1_serNum": 20553, "atom2_serNum": 77463, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/1116/N3", "atom2_id": "///z/268/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2117, "atom1_serNum": 20555, "atom2_serNum": 77462, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///2/1116/N4", "atom2_id": "///z/268/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2118, "atom1_serNum": 20572, "atom2_serNum": 77442, "donAcc_type": "standard", "distance": 2.792, "atom1_id": "///2/1117/O2", "atom2_id": "///z/267/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2119, "atom1_serNum": 20573, "atom2_serNum": 77440, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///2/1117/N3", "atom2_id": "///z/267/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2120, "atom1_serNum": 20575, "atom2_serNum": 77439, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///2/1117/N4", "atom2_id": "///z/267/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2121, "atom1_serNum": 20592, "atom2_serNum": 77419, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///2/1118/O2", "atom2_id": "///z/266/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2122, "atom1_serNum": 20593, "atom2_serNum": 77417, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///2/1118/N3", "atom2_id": "///z/266/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2123, "atom1_serNum": 20595, "atom2_serNum": 77416, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///2/1118/N4", "atom2_id": "///z/266/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2124, "atom1_serNum": 20595, "atom2_serNum": 77439, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///2/1118/N4", "atom2_id": "///z/267/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2125, "atom1_serNum": 20648, "atom2_serNum": 39070, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///2/1121/O3'", "atom2_id": "///C/160/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2126, "atom1_serNum": 20650, "atom2_serNum": 39420, "donAcc_type": "acceptable", "distance": 2.728, "atom1_id": "///2/1121/O2'", "atom2_id": "///C/204/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2127, "atom1_serNum": 20660, "atom2_serNum": 39405, "donAcc_type": "standard", "distance": 2.336, "atom1_id": "///2/1121/N2", "atom2_id": "///C/202/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2128, "atom1_serNum": 20706, "atom2_serNum": 38976, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///2/1124/OP1", "atom2_id": "///C/150/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2129, "atom1_serNum": 20706, "atom2_serNum": 38984, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///2/1124/OP1", "atom2_id": "///C/151/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2130, "atom1_serNum": 20715, "atom2_serNum": 61647, "donAcc_type": "acceptable", "distance": 2.806, "atom1_id": "///2/1124/O2'", "atom2_id": "///S/127/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2131, "atom1_serNum": 20726, "atom2_serNum": 61667, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///2/1125/OP1", "atom2_id": "///S/129/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2132, "atom1_serNum": 20746, "atom2_serNum": 36544, "donAcc_type": "standard", "distance": 2.357, "atom1_id": "///2/1126/OP1", "atom2_id": "///B/41/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2133, "atom1_serNum": 20747, "atom2_serNum": 61667, "donAcc_type": "standard", "distance": 3.568, "atom1_id": "///2/1126/OP2", "atom2_id": "///S/129/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2134, "atom1_serNum": 20778, "atom2_serNum": 70118, "donAcc_type": "acceptable", "distance": 3.502, "atom1_id": "///2/1127/O2'", "atom2_id": "///c/17/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2135, "atom1_serNum": 20798, "atom2_serNum": 70141, "donAcc_type": "acceptable", "distance": 2.989, "atom1_id": "///2/1128/O2'", "atom2_id": "///c/19/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2136, "atom1_serNum": 20805, "atom2_serNum": 20825, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///2/1128/N4", "atom2_id": "///2/1129/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2137, "atom1_serNum": 20809, "atom2_serNum": 70171, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///2/1129/OP1", "atom2_id": "///c/22/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2138, "atom1_serNum": 20818, "atom2_serNum": 20837, "donAcc_type": "acceptable", "distance": 2.465, "atom1_id": "///2/1129/O2'", "atom2_id": "///2/1130/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2139, "atom1_serNum": 20833, "atom2_serNum": 20851, "donAcc_type": "standard", "distance": 2.366, "atom1_id": "///2/1130/OP2", "atom2_id": "///2/1130/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2140, "atom1_serNum": 20841, "atom2_serNum": 56375, "donAcc_type": "acceptable", "distance": 2.895, "atom1_id": "///2/1130/O2'", "atom2_id": "///O/9/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2141, "atom1_serNum": 20944, "atom2_serNum": 69226, "donAcc_type": "standard", "distance": 2.529, "atom1_id": "///2/1135/OP2", "atom2_id": "///b/6/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2142, "atom1_serNum": 20972, "atom2_serNum": 20988, "donAcc_type": "acceptable", "distance": 3.269, "atom1_id": "///2/1136/O2'", "atom2_id": "///2/1137/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2143, "atom1_serNum": 20992, "atom2_serNum": 21003, "donAcc_type": "acceptable", "distance": 2.406, "atom1_id": "///2/1137/O2'", "atom2_id": "///2/1138/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2144, "atom1_serNum": 20992, "atom2_serNum": 21005, "donAcc_type": "acceptable", "distance": 2.798, "atom1_id": "///2/1137/O2'", "atom2_id": "///2/1138/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2145, "atom1_serNum": 20992, "atom2_serNum": 37416, "donAcc_type": "acceptable", "distance": 3.099, "atom1_id": "///2/1137/O2'", "atom2_id": "///B/155/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2146, "atom1_serNum": 20997, "atom2_serNum": 21235, "donAcc_type": "standard", "distance": 3.187, "atom1_id": "///2/1137/N3", "atom2_id": "///2/1148/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2147, "atom1_serNum": 21003, "atom2_serNum": 37415, "donAcc_type": "standard", "distance": 2.527, "atom1_id": "///2/1138/OP1", "atom2_id": "///B/155/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2148, "atom1_serNum": 21003, "atom2_serNum": 37416, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///2/1138/OP1", "atom2_id": "///B/155/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2149, "atom1_serNum": 21052, "atom2_serNum": 21293, "donAcc_type": "acceptable", "distance": 2.880, "atom1_id": "///2/1140/O2'", "atom2_id": "///2/1151/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2150, "atom1_serNum": 21059, "atom2_serNum": 21214, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/1140/O6", "atom2_id": "///2/1147/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2151, "atom1_serNum": 21060, "atom2_serNum": 21212, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1140/N1", "atom2_id": "///2/1147/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2152, "atom1_serNum": 21062, "atom2_serNum": 21211, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///2/1140/N2", "atom2_id": "///2/1147/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2153, "atom1_serNum": 21062, "atom2_serNum": 21253, "donAcc_type": "standard", "distance": 3.424, "atom1_id": "///2/1140/N2", "atom2_id": "///2/1149/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2154, "atom1_serNum": 21062, "atom2_serNum": 21289, "donAcc_type": "standard", "distance": 3.838, "atom1_id": "///2/1140/N2", "atom2_id": "///2/1151/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2155, "atom1_serNum": 21082, "atom2_serNum": 21194, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///2/1141/O6", "atom2_id": "///2/1146/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2156, "atom1_serNum": 21083, "atom2_serNum": 21192, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/1141/N1", "atom2_id": "///2/1146/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2157, "atom1_serNum": 21085, "atom2_serNum": 21191, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///2/1141/N2", "atom2_id": "///2/1146/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2158, "atom1_serNum": 21098, "atom2_serNum": 21147, "donAcc_type": "acceptable", "distance": 3.223, "atom1_id": "///2/1142/O2'", "atom2_id": "///2/1144/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2159, "atom1_serNum": 21106, "atom2_serNum": 21157, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///2/1142/N1", "atom2_id": "///2/1145/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2160, "atom1_serNum": 21108, "atom2_serNum": 21157, "donAcc_type": "standard", "distance": 2.596, "atom1_id": "///2/1142/N2", "atom2_id": "///2/1145/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2161, "atom1_serNum": 21108, "atom2_serNum": 21169, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///2/1142/N2", "atom2_id": "///2/1145/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2162, "atom1_serNum": 21112, "atom2_serNum": 40706, "donAcc_type": "acceptable", "distance": 3.443, "atom1_id": "///2/1143/OP1", "atom2_id": "///D/190/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2163, "atom1_serNum": 21113, "atom2_serNum": 40700, "donAcc_type": "questionable", "distance": 2.992, "atom1_id": "///2/1143/OP2", "atom2_id": "///D/189/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2164, "atom1_serNum": 21121, "atom2_serNum": 25672, "donAcc_type": "acceptable", "distance": 2.878, "atom1_id": "///2/1143/O2'", "atom2_id": "///2/1355/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2165, "atom1_serNum": 21129, "atom2_serNum": 22306, "donAcc_type": "acceptable", "distance": 3.610, "atom1_id": "///2/1143/N1", "atom2_id": "///2/1198/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2166, "atom1_serNum": 21131, "atom2_serNum": 22316, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///2/1143/N3", "atom2_id": "///2/1198/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2167, "atom1_serNum": 21143, "atom2_serNum": 21161, "donAcc_type": "acceptable", "distance": 3.001, "atom1_id": "///2/1144/O2'", "atom2_id": "///2/1145/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2168, "atom1_serNum": 21143, "atom2_serNum": 22329, "donAcc_type": "acceptable", "distance": 2.568, "atom1_id": "///2/1144/O2'", "atom2_id": "///2/1199/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2169, "atom1_serNum": 21153, "atom2_serNum": 22325, "donAcc_type": "questionable", "distance": 3.356, "atom1_id": "///2/1144/N3", "atom2_id": "///2/1199/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2170, "atom1_serNum": 21161, "atom2_serNum": 22329, "donAcc_type": "acceptable", "distance": 3.426, "atom1_id": "///2/1145/O4'", "atom2_id": "///2/1199/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2171, "atom1_serNum": 21165, "atom2_serNum": 22342, "donAcc_type": "acceptable", "distance": 3.268, "atom1_id": "///2/1145/O2'", "atom2_id": "///2/1200/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2172, "atom1_serNum": 21178, "atom2_serNum": 69879, "donAcc_type": "standard", "distance": 3.706, "atom1_id": "///2/1146/OP1", "atom2_id": "///b/89/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2173, "atom1_serNum": 21187, "atom2_serNum": 21203, "donAcc_type": "acceptable", "distance": 3.148, "atom1_id": "///2/1146/O2'", "atom2_id": "///2/1147/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2174, "atom1_serNum": 21187, "atom2_serNum": 21278, "donAcc_type": "acceptable", "distance": 3.224, "atom1_id": "///2/1146/O2'", "atom2_id": "///2/1150/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2175, "atom1_serNum": 21187, "atom2_serNum": 21279, "donAcc_type": "acceptable", "distance": 2.400, "atom1_id": "///2/1146/O2'", "atom2_id": "///2/1150/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2176, "atom1_serNum": 21207, "atom2_serNum": 21271, "donAcc_type": "acceptable", "distance": 3.279, "atom1_id": "///2/1147/O2'", "atom2_id": "///2/1150/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2177, "atom1_serNum": 21211, "atom2_serNum": 21271, "donAcc_type": "acceptable", "distance": 3.327, "atom1_id": "///2/1147/O2", "atom2_id": "///2/1150/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2178, "atom1_serNum": 21219, "atom2_serNum": 69227, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///2/1148/OP2", "atom2_id": "///b/6/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2179, "atom1_serNum": 21249, "atom2_serNum": 21263, "donAcc_type": "acceptable", "distance": 2.826, "atom1_id": "///2/1149/O2'", "atom2_id": "///2/1150/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2180, "atom1_serNum": 21249, "atom2_serNum": 21297, "donAcc_type": "acceptable", "distance": 3.386, "atom1_id": "///2/1149/O2'", "atom2_id": "///2/1151/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2181, "atom1_serNum": 21314, "atom2_serNum": 65556, "donAcc_type": "standard", "distance": 3.291, "atom1_id": "///2/1152/O3'", "atom2_id": "///X/19/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2182, "atom1_serNum": 21316, "atom2_serNum": 65532, "donAcc_type": "acceptable", "distance": 2.274, "atom1_id": "///2/1152/O2'", "atom2_id": "///X/16/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2183, "atom1_serNum": 21320, "atom2_serNum": 65533, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/1152/O2", "atom2_id": "///X/16/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2184, "atom1_serNum": 21328, "atom2_serNum": 65525, "donAcc_type": "standard", "distance": 3.417, "atom1_id": "///2/1153/OP2", "atom2_id": "///X/15/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2185, "atom1_serNum": 21328, "atom2_serNum": 65976, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///2/1153/OP2", "atom2_id": "///X/71/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2186, "atom1_serNum": 21336, "atom2_serNum": 21348, "donAcc_type": "acceptable", "distance": 3.199, "atom1_id": "///2/1153/O2'", "atom2_id": "///2/1154/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2187, "atom1_serNum": 21347, "atom2_serNum": 21376, "donAcc_type": "acceptable", "distance": 2.987, "atom1_id": "///2/1154/OP1", "atom2_id": "///2/1155/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2188, "atom1_serNum": 21348, "atom2_serNum": 40690, "donAcc_type": "standard", "distance": 3.261, "atom1_id": "///2/1154/OP2", "atom2_id": "///D/187/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2189, "atom1_serNum": 21356, "atom2_serNum": 21368, "donAcc_type": "acceptable", "distance": 3.178, "atom1_id": "///2/1154/O2'", "atom2_id": "///2/1155/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2190, "atom1_serNum": 21368, "atom2_serNum": 40739, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///2/1155/OP2", "atom2_id": "///D/194/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2191, "atom1_serNum": 21376, "atom2_serNum": 65976, "donAcc_type": "acceptable", "distance": 2.454, "atom1_id": "///2/1155/O2'", "atom2_id": "///X/71/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2192, "atom1_serNum": 21416, "atom2_serNum": 65990, "donAcc_type": "acceptable", "distance": 2.882, "atom1_id": "///2/1157/O2'", "atom2_id": "///X/74/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2193, "atom1_serNum": 21416, "atom2_serNum": 66002, "donAcc_type": "acceptable", "distance": 3.189, "atom1_id": "///2/1157/O2'", "atom2_id": "///X/76/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2194, "atom1_serNum": 21430, "atom2_serNum": 66483, "donAcc_type": "standard", "distance": 3.615, "atom1_id": "///2/1158/OP1", "atom2_id": "///Y/5/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2195, "atom1_serNum": 21431, "atom2_serNum": 65503, "donAcc_type": "standard", "distance": 3.500, "atom1_id": "///2/1158/OP2", "atom2_id": "///X/12/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2196, "atom1_serNum": 21437, "atom2_serNum": 66007, "donAcc_type": "acceptable", "distance": 2.778, "atom1_id": "///2/1158/O3'", "atom2_id": "///X/76/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2197, "atom1_serNum": 21449, "atom2_serNum": 65423, "donAcc_type": "standard", "distance": 3.899, "atom1_id": "///2/1158/N2", "atom2_id": "///X/2/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2198, "atom1_serNum": 21453, "atom2_serNum": 66007, "donAcc_type": "acceptable", "distance": 2.633, "atom1_id": "///2/1159/OP1", "atom2_id": "///X/76/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2199, "atom1_serNum": 21477, "atom2_serNum": 66474, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///2/1160/OP2", "atom2_id": "///Y/5/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2200, "atom1_serNum": 21512, "atom2_serNum": 66467, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/1161/O4", "atom2_id": "///Y/3/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2201, "atom1_serNum": 21580, "atom2_serNum": 21598, "donAcc_type": "standard", "distance": 2.296, "atom1_id": "///2/1165/OP2", "atom2_id": "///2/1165/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2202, "atom1_serNum": 21588, "atom2_serNum": 66653, "donAcc_type": "acceptable", "distance": 2.485, "atom1_id": "///2/1165/O2'", "atom2_id": "///Y/24/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2203, "atom1_serNum": 21598, "atom2_serNum": 66612, "donAcc_type": "standard", "distance": 3.328, "atom1_id": "///2/1165/N2", "atom2_id": "///Y/20/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2204, "atom1_serNum": 21611, "atom2_serNum": 22247, "donAcc_type": "acceptable", "distance": 3.036, "atom1_id": "///2/1166/O2'", "atom2_id": "///2/1195/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2205, "atom1_serNum": 21615, "atom2_serNum": 66663, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///2/1166/N7", "atom2_id": "///Y/25/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2206, "atom1_serNum": 21618, "atom2_serNum": 22202, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///2/1166/O6", "atom2_id": "///2/1193/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2207, "atom1_serNum": 21618, "atom2_serNum": 22204, "donAcc_type": "questionable", "distance": 3.204, "atom1_id": "///2/1166/O6", "atom2_id": "///2/1193/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2208, "atom1_serNum": 21619, "atom2_serNum": 22201, "donAcc_type": "standard", "distance": 3.257, "atom1_id": "///2/1166/N1", "atom2_id": "///2/1193/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2209, "atom1_serNum": 21621, "atom2_serNum": 22201, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///2/1166/N2", "atom2_id": "///2/1193/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2210, "atom1_serNum": 21621, "atom2_serNum": 22249, "donAcc_type": "standard", "distance": 3.828, "atom1_id": "///2/1166/N2", "atom2_id": "///2/1195/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2211, "atom1_serNum": 21634, "atom2_serNum": 22261, "donAcc_type": "acceptable", "distance": 3.330, "atom1_id": "///2/1167/O2'", "atom2_id": "///2/1196/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2212, "atom1_serNum": 21641, "atom2_serNum": 22182, "donAcc_type": "standard", "distance": 3.697, "atom1_id": "///2/1167/O6", "atom2_id": "///2/1192/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2213, "atom1_serNum": 21642, "atom2_serNum": 22181, "donAcc_type": "standard", "distance": 3.245, "atom1_id": "///2/1167/N1", "atom2_id": "///2/1192/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2214, "atom1_serNum": 21664, "atom2_serNum": 22164, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///2/1168/O6", "atom2_id": "///2/1191/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2215, "atom1_serNum": 21665, "atom2_serNum": 22162, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1168/N1", "atom2_id": "///2/1191/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2216, "atom1_serNum": 21667, "atom2_serNum": 22161, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///2/1168/N2", "atom2_id": "///2/1191/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2217, "atom1_serNum": 21672, "atom2_serNum": 21703, "donAcc_type": "acceptable", "distance": 2.681, "atom1_id": "///2/1169/OP2", "atom2_id": "///2/1170/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2218, "atom1_serNum": 21680, "atom2_serNum": 22142, "donAcc_type": "acceptable", "distance": 3.114, "atom1_id": "///2/1169/O2'", "atom2_id": "///2/1190/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2219, "atom1_serNum": 21684, "atom2_serNum": 21703, "donAcc_type": "acceptable", "distance": 3.139, "atom1_id": "///2/1169/N7", "atom2_id": "///2/1170/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2220, "atom1_serNum": 21690, "atom2_serNum": 22139, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///2/1169/N2", "atom2_id": "///2/1190/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2221, "atom1_serNum": 21691, "atom2_serNum": 22142, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///2/1169/N3", "atom2_id": "///2/1190/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2222, "atom1_serNum": 21707, "atom2_serNum": 22120, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///2/1170/N7", "atom2_id": "///2/1189/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2223, "atom1_serNum": 21710, "atom2_serNum": 22105, "donAcc_type": "standard", "distance": 3.089, "atom1_id": "///2/1170/N6", "atom2_id": "///2/1189/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2224, "atom1_serNum": 21710, "atom2_serNum": 22117, "donAcc_type": "standard", "distance": 2.604, "atom1_id": "///2/1170/N6", "atom2_id": "///2/1189/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2225, "atom1_serNum": 21725, "atom2_serNum": 21740, "donAcc_type": "acceptable", "distance": 3.003, "atom1_id": "///2/1171/O2'", "atom2_id": "///2/1172/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2226, "atom1_serNum": 21725, "atom2_serNum": 22075, "donAcc_type": "acceptable", "distance": 2.378, "atom1_id": "///2/1171/O2'", "atom2_id": "///2/1187/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2227, "atom1_serNum": 21725, "atom2_serNum": 22076, "donAcc_type": "acceptable", "distance": 3.246, "atom1_id": "///2/1171/O2'", "atom2_id": "///2/1187/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2228, "atom1_serNum": 21735, "atom2_serNum": 21755, "donAcc_type": "standard", "distance": 3.769, "atom1_id": "///2/1171/N2", "atom2_id": "///2/1172/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2229, "atom1_serNum": 21735, "atom2_serNum": 22083, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///2/1171/N2", "atom2_id": "///2/1188/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2230, "atom1_serNum": 21740, "atom2_serNum": 22076, "donAcc_type": "standard", "distance": 3.390, "atom1_id": "///2/1172/OP2", "atom2_id": "///2/1187/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2231, "atom1_serNum": 21752, "atom2_serNum": 22098, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///2/1172/O2", "atom2_id": "///2/1188/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2232, "atom1_serNum": 21753, "atom2_serNum": 22095, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///2/1172/N3", "atom2_id": "///2/1188/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2233, "atom1_serNum": 21759, "atom2_serNum": 75253, "donAcc_type": "standard", "distance": 3.575, "atom1_id": "///2/1173/OP1", "atom2_id": "///n/17/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2234, "atom1_serNum": 21768, "atom2_serNum": 33123, "donAcc_type": "acceptable", "distance": 3.206, "atom1_id": "///2/1173/O2'", "atom2_id": "///2/1716/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2235, "atom1_serNum": 21772, "atom2_serNum": 22078, "donAcc_type": "standard", "distance": 3.573, "atom1_id": "///2/1173/N7", "atom2_id": "///2/1187/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2236, "atom1_serNum": 21775, "atom2_serNum": 22068, "donAcc_type": "acceptable", "distance": 3.585, "atom1_id": "///2/1173/N6", "atom2_id": "///2/1187/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2237, "atom1_serNum": 21817, "atom2_serNum": 22053, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///2/1175/O6", "atom2_id": "///2/1186/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2238, "atom1_serNum": 21818, "atom2_serNum": 22052, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///2/1175/N1", "atom2_id": "///2/1186/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2239, "atom1_serNum": 21820, "atom2_serNum": 22052, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///2/1175/N2", "atom2_id": "///2/1186/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2240, "atom1_serNum": 21840, "atom2_serNum": 22035, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///2/1176/O6", "atom2_id": "///2/1185/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2241, "atom1_serNum": 21841, "atom2_serNum": 22033, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/1176/N1", "atom2_id": "///2/1185/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2242, "atom1_serNum": 21843, "atom2_serNum": 22032, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///2/1176/N2", "atom2_id": "///2/1185/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2243, "atom1_serNum": 21860, "atom2_serNum": 22013, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///2/1177/O2", "atom2_id": "///2/1184/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2244, "atom1_serNum": 21860, "atom2_serNum": 22015, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///2/1177/O2", "atom2_id": "///2/1184/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2245, "atom1_serNum": 21861, "atom2_serNum": 22012, "donAcc_type": "standard", "distance": 3.469, "atom1_id": "///2/1177/N3", "atom2_id": "///2/1184/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2246, "atom1_serNum": 21881, "atom2_serNum": 21991, "donAcc_type": "standard", "distance": 3.540, "atom1_id": "///2/1178/N3", "atom2_id": "///2/1183/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2247, "atom1_serNum": 21883, "atom2_serNum": 21990, "donAcc_type": "standard", "distance": 3.943, "atom1_id": "///2/1178/O4", "atom2_id": "///2/1183/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2248, "atom1_serNum": 21896, "atom2_serNum": 21943, "donAcc_type": "acceptable", "distance": 2.791, "atom1_id": "///2/1179/O2'", "atom2_id": "///2/1181/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2249, "atom1_serNum": 21896, "atom2_serNum": 21946, "donAcc_type": "acceptable", "distance": 3.249, "atom1_id": "///2/1179/O2'", "atom2_id": "///2/1181/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2250, "atom1_serNum": 21906, "atom2_serNum": 21953, "donAcc_type": "standard", "distance": 2.415, "atom1_id": "///2/1179/N2", "atom2_id": "///2/1182/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2251, "atom1_serNum": 21906, "atom2_serNum": 21965, "donAcc_type": "standard", "distance": 3.777, "atom1_id": "///2/1179/N2", "atom2_id": "///2/1182/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2252, "atom1_serNum": 21952, "atom2_serNum": 75262, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1182/OP1", "atom2_id": "///n/18/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2253, "atom1_serNum": 21952, "atom2_serNum": 75265, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///2/1182/OP1", "atom2_id": "///n/18/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2254, "atom1_serNum": 21961, "atom2_serNum": 35689, "donAcc_type": "acceptable", "distance": 2.699, "atom1_id": "///2/1182/O2'", "atom2_id": "///2/1845/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2255, "atom1_serNum": 21968, "atom2_serNum": 21993, "donAcc_type": "standard", "distance": 3.407, "atom1_id": "///2/1182/N6", "atom2_id": "///2/1183/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2256, "atom1_serNum": 21974, "atom2_serNum": 75234, "donAcc_type": "standard", "distance": 3.356, "atom1_id": "///2/1183/OP1", "atom2_id": "///n/15/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2257, "atom1_serNum": 21975, "atom2_serNum": 75265, "donAcc_type": "standard", "distance": 3.510, "atom1_id": "///2/1183/OP2", "atom2_id": "///n/18/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2258, "atom1_serNum": 22068, "atom2_serNum": 22087, "donAcc_type": "acceptable", "distance": 3.339, "atom1_id": "///2/1187/O2'", "atom2_id": "///2/1188/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2259, "atom1_serNum": 22089, "atom2_serNum": 66693, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///2/1188/O3'", "atom2_id": "///Y/28/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2260, "atom1_serNum": 22104, "atom2_serNum": 66693, "donAcc_type": "standard", "distance": 3.123, "atom1_id": "///2/1189/OP1", "atom2_id": "///Y/28/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2261, "atom1_serNum": 22113, "atom2_serNum": 66735, "donAcc_type": "acceptable", "distance": 3.233, "atom1_id": "///2/1189/O2'", "atom2_id": "///Y/34/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2262, "atom1_serNum": 22135, "atom2_serNum": 33079, "donAcc_type": "acceptable", "distance": 2.971, "atom1_id": "///2/1190/O2'", "atom2_id": "///2/1714/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2263, "atom1_serNum": 22135, "atom2_serNum": 33081, "donAcc_type": "acceptable", "distance": 2.979, "atom1_id": "///2/1190/O2'", "atom2_id": "///2/1714/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2264, "atom1_serNum": 22145, "atom2_serNum": 33081, "donAcc_type": "acceptable", "distance": 3.324, "atom1_id": "///2/1190/N3", "atom2_id": "///2/1714/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2265, "atom1_serNum": 22148, "atom2_serNum": 67365, "donAcc_type": "standard", "distance": 3.984, "atom1_id": "///2/1191/OP1", "atom2_id": "///Y/119/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2266, "atom1_serNum": 22153, "atom2_serNum": 33081, "donAcc_type": "acceptable", "distance": 3.196, "atom1_id": "///2/1191/O4'", "atom2_id": "///2/1714/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2267, "atom1_serNum": 22173, "atom2_serNum": 35187, "donAcc_type": "acceptable", "distance": 2.982, "atom1_id": "///2/1192/O4'", "atom2_id": "///2/1821/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2268, "atom1_serNum": 22177, "atom2_serNum": 22193, "donAcc_type": "acceptable", "distance": 3.212, "atom1_id": "///2/1192/O2'", "atom2_id": "///2/1193/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2269, "atom1_serNum": 22177, "atom2_serNum": 35185, "donAcc_type": "acceptable", "distance": 3.555, "atom1_id": "///2/1192/O2'", "atom2_id": "///2/1821/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2270, "atom1_serNum": 22204, "atom2_serNum": 67305, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///2/1193/O4", "atom2_id": "///Y/110/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2271, "atom1_serNum": 22320, "atom2_serNum": 69181, "donAcc_type": "standard", "distance": 3.040, "atom1_id": "///2/1199/OP1", "atom2_id": "///b/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2272, "atom1_serNum": 22342, "atom2_serNum": 69880, "donAcc_type": "standard", "distance": 3.835, "atom1_id": "///2/1200/OP1", "atom2_id": "///b/89/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2273, "atom1_serNum": 22351, "atom2_serNum": 22366, "donAcc_type": "acceptable", "distance": 2.750, "atom1_id": "///2/1200/O2'", "atom2_id": "///2/1201/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2274, "atom1_serNum": 22351, "atom2_serNum": 22369, "donAcc_type": "acceptable", "distance": 3.050, "atom1_id": "///2/1200/O2'", "atom2_id": "///2/1201/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2275, "atom1_serNum": 22364, "atom2_serNum": 69880, "donAcc_type": "standard", "distance": 3.828, "atom1_id": "///2/1201/OP1", "atom2_id": "///b/89/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2276, "atom1_serNum": 22373, "atom2_serNum": 25730, "donAcc_type": "acceptable", "distance": 3.166, "atom1_id": "///2/1201/O2'", "atom2_id": "///2/1358/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2277, "atom1_serNum": 22398, "atom2_serNum": 22420, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///2/1202/N3", "atom2_id": "///2/1203/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2278, "atom1_serNum": 22413, "atom2_serNum": 22426, "donAcc_type": "acceptable", "distance": 2.570, "atom1_id": "///2/1203/O2'", "atom2_id": "///2/1204/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2279, "atom1_serNum": 22417, "atom2_serNum": 32776, "donAcc_type": "questionable", "distance": 3.242, "atom1_id": "///2/1203/O2", "atom2_id": "///2/1699/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2280, "atom1_serNum": 22420, "atom2_serNum": 32734, "donAcc_type": "questionable", "distance": 2.985, "atom1_id": "///2/1203/O4", "atom2_id": "///2/1697/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2281, "atom1_serNum": 22433, "atom2_serNum": 22452, "donAcc_type": "acceptable", "distance": 2.571, "atom1_id": "///2/1204/O2'", "atom2_id": "///2/1205/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2282, "atom1_serNum": 22433, "atom2_serNum": 32782, "donAcc_type": "acceptable", "distance": 2.472, "atom1_id": "///2/1204/O2'", "atom2_id": "///2/1700/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2283, "atom1_serNum": 22456, "atom2_serNum": 35469, "donAcc_type": "acceptable", "distance": 2.960, "atom1_id": "///2/1205/O2'", "atom2_id": "///2/1834/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2284, "atom1_serNum": 22456, "atom2_serNum": 35472, "donAcc_type": "acceptable", "distance": 2.966, "atom1_id": "///2/1205/O2'", "atom2_id": "///2/1834/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2285, "atom1_serNum": 22464, "atom2_serNum": 32671, "donAcc_type": "standard", "distance": 3.914, "atom1_id": "///2/1205/N1", "atom2_id": "///2/1694/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2286, "atom1_serNum": 22466, "atom2_serNum": 32711, "donAcc_type": "standard", "distance": 3.383, "atom1_id": "///2/1205/N2", "atom2_id": "///2/1696/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2287, "atom1_serNum": 22479, "atom2_serNum": 35542, "donAcc_type": "acceptable", "distance": 3.405, "atom1_id": "///2/1206/O2'", "atom2_id": "///2/1837/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2288, "atom1_serNum": 22484, "atom2_serNum": 32649, "donAcc_type": "standard", "distance": 3.155, "atom1_id": "///2/1206/N3", "atom2_id": "///2/1693/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2289, "atom1_serNum": 22486, "atom2_serNum": 32625, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///2/1206/N4", "atom2_id": "///2/1692/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2290, "atom1_serNum": 22514, "atom2_serNum": 35487, "donAcc_type": "acceptable", "distance": 3.251, "atom1_id": "///2/1208/OP2", "atom2_id": "///2/1835/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2291, "atom1_serNum": 22522, "atom2_serNum": 35491, "donAcc_type": "acceptable", "distance": 3.612, "atom1_id": "///2/1208/O2'", "atom2_id": "///2/1835/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2292, "atom1_serNum": 22529, "atom2_serNum": 32608, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///2/1208/N6", "atom2_id": "///2/1691/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2293, "atom1_serNum": 22530, "atom2_serNum": 32606, "donAcc_type": "standard", "distance": 2.835, "atom1_id": "///2/1208/N1", "atom2_id": "///2/1691/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2294, "atom1_serNum": 22544, "atom2_serNum": 69851, "donAcc_type": "acceptable", "distance": 3.890, "atom1_id": "///2/1209/O2'", "atom2_id": "///b/86/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2295, "atom1_serNum": 22551, "atom2_serNum": 32588, "donAcc_type": "standard", "distance": 2.660, "atom1_id": "///2/1209/N6", "atom2_id": "///2/1690/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2296, "atom1_serNum": 22552, "atom2_serNum": 32586, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///2/1209/N1", "atom2_id": "///2/1690/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2297, "atom1_serNum": 22576, "atom2_serNum": 32565, "donAcc_type": "standard", "distance": 3.335, "atom1_id": "///2/1210/N2", "atom2_id": "///2/1689/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2298, "atom1_serNum": 22576, "atom2_serNum": 32566, "donAcc_type": "standard", "distance": 3.264, "atom1_id": "///2/1210/N2", "atom2_id": "///2/1689/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2299, "atom1_serNum": 22596, "atom2_serNum": 32548, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///2/1211/O6", "atom2_id": "///2/1688/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2300, "atom1_serNum": 22597, "atom2_serNum": 32546, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///2/1211/N1", "atom2_id": "///2/1688/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2301, "atom1_serNum": 22599, "atom2_serNum": 32545, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///2/1211/N2", "atom2_id": "///2/1688/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2302, "atom1_serNum": 22612, "atom2_serNum": 22631, "donAcc_type": "acceptable", "distance": 3.096, "atom1_id": "///2/1212/O2'", "atom2_id": "///2/1213/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2303, "atom1_serNum": 22619, "atom2_serNum": 32528, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///2/1212/O6", "atom2_id": "///2/1687/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2304, "atom1_serNum": 22620, "atom2_serNum": 32526, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/1212/N1", "atom2_id": "///2/1687/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2305, "atom1_serNum": 22622, "atom2_serNum": 32525, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///2/1212/N2", "atom2_id": "///2/1687/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2306, "atom1_serNum": 22635, "atom2_serNum": 22651, "donAcc_type": "acceptable", "distance": 2.995, "atom1_id": "///2/1213/O2'", "atom2_id": "///2/1214/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2307, "atom1_serNum": 22639, "atom2_serNum": 32508, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///2/1213/O2", "atom2_id": "///2/1686/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2308, "atom1_serNum": 22640, "atom2_serNum": 32506, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///2/1213/N3", "atom2_id": "///2/1686/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2309, "atom1_serNum": 22642, "atom2_serNum": 32505, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///2/1213/N4", "atom2_id": "///2/1686/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2310, "atom1_serNum": 22647, "atom2_serNum": 32405, "donAcc_type": "questionable", "distance": 2.879, "atom1_id": "///2/1214/OP2", "atom2_id": "///2/1681/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2311, "atom1_serNum": 22655, "atom2_serNum": 22688, "donAcc_type": "acceptable", "distance": 3.066, "atom1_id": "///2/1214/O2'", "atom2_id": "///2/1216/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2312, "atom1_serNum": 22659, "atom2_serNum": 32425, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1214/N7", "atom2_id": "///2/1682/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2313, "atom1_serNum": 22662, "atom2_serNum": 32422, "donAcc_type": "standard", "distance": 3.252, "atom1_id": "///2/1214/N6", "atom2_id": "///2/1682/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2314, "atom1_serNum": 22662, "atom2_serNum": 32423, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///2/1214/N6", "atom2_id": "///2/1682/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2315, "atom1_serNum": 22662, "atom2_serNum": 32485, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///2/1214/N6", "atom2_id": "///2/1685/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2316, "atom1_serNum": 22663, "atom2_serNum": 32483, "donAcc_type": "standard", "distance": 3.301, "atom1_id": "///2/1214/N1", "atom2_id": "///2/1685/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2317, "atom1_serNum": 22669, "atom2_serNum": 22724, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///2/1215/OP2", "atom2_id": "///2/1217/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2318, "atom1_serNum": 22673, "atom2_serNum": 22746, "donAcc_type": "standard", "distance": 3.716, "atom1_id": "///2/1215/O4'", "atom2_id": "///2/1218/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2319, "atom1_serNum": 22677, "atom2_serNum": 31619, "donAcc_type": "acceptable", "distance": 2.347, "atom1_id": "///2/1215/O2'", "atom2_id": "///2/1645/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2320, "atom1_serNum": 22682, "atom2_serNum": 22786, "donAcc_type": "standard", "distance": 3.193, "atom1_id": "///2/1215/N3", "atom2_id": "///2/1220/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2321, "atom1_serNum": 22684, "atom2_serNum": 22787, "donAcc_type": "standard", "distance": 3.393, "atom1_id": "///2/1215/N4", "atom2_id": "///2/1220/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2322, "atom1_serNum": 22688, "atom2_serNum": 22721, "donAcc_type": "questionable", "distance": 3.298, "atom1_id": "///2/1216/OP1", "atom2_id": "///2/1217/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2323, "atom1_serNum": 22697, "atom2_serNum": 31598, "donAcc_type": "acceptable", "distance": 2.988, "atom1_id": "///2/1216/O2'", "atom2_id": "///2/1644/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2324, "atom1_serNum": 22704, "atom2_serNum": 25374, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///2/1216/N4", "atom2_id": "///2/1342/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2325, "atom1_serNum": 22709, "atom2_serNum": 60615, "donAcc_type": "acceptable", "distance": 2.895, "atom1_id": "///2/1217/OP2", "atom2_id": "///R/145/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2326, "atom1_serNum": 22717, "atom2_serNum": 22735, "donAcc_type": "acceptable", "distance": 3.100, "atom1_id": "///2/1217/O2'", "atom2_id": "///2/1218/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2327, "atom1_serNum": 22717, "atom2_serNum": 32462, "donAcc_type": "acceptable", "distance": 3.318, "atom1_id": "///2/1217/O2'", "atom2_id": "///2/1684/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2328, "atom1_serNum": 22717, "atom2_serNum": 32463, "donAcc_type": "acceptable", "distance": 3.089, "atom1_id": "///2/1217/O2'", "atom2_id": "///2/1684/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2329, "atom1_serNum": 22724, "atom2_serNum": 32405, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///2/1217/N6", "atom2_id": "///2/1681/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2330, "atom1_serNum": 22725, "atom2_serNum": 32403, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///2/1217/N1", "atom2_id": "///2/1681/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2331, "atom1_serNum": 22727, "atom2_serNum": 32465, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///2/1217/N3", "atom2_id": "///2/1684/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2332, "atom1_serNum": 22739, "atom2_serNum": 22755, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///2/1218/O2'", "atom2_id": "///2/1219/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2333, "atom1_serNum": 22739, "atom2_serNum": 32443, "donAcc_type": "acceptable", "distance": 3.904, "atom1_id": "///2/1218/O2'", "atom2_id": "///2/1683/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2334, "atom1_serNum": 22743, "atom2_serNum": 32385, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///2/1218/O2", "atom2_id": "///2/1680/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2335, "atom1_serNum": 22744, "atom2_serNum": 32383, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///2/1218/N3", "atom2_id": "///2/1680/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2336, "atom1_serNum": 22746, "atom2_serNum": 32382, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///2/1218/N4", "atom2_id": "///2/1680/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2337, "atom1_serNum": 22777, "atom2_serNum": 46282, "donAcc_type": "standard", "distance": 3.874, "atom1_id": "///2/1220/O3'", "atom2_id": "///G/145/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2338, "atom1_serNum": 22789, "atom2_serNum": 32311, "donAcc_type": "acceptable", "distance": 2.329, "atom1_id": "///2/1220/N3", "atom2_id": "///2/1677/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2339, "atom1_serNum": 22801, "atom2_serNum": 32315, "donAcc_type": "acceptable", "distance": 2.833, "atom1_id": "///2/1221/O2'", "atom2_id": "///2/1677/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2340, "atom1_serNum": 22808, "atom2_serNum": 31634, "donAcc_type": "standard", "distance": 2.575, "atom1_id": "///2/1221/O6", "atom2_id": "///2/1645/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2341, "atom1_serNum": 22809, "atom2_serNum": 31632, "donAcc_type": "standard", "distance": 2.601, "atom1_id": "///2/1221/N1", "atom2_id": "///2/1645/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2342, "atom1_serNum": 22811, "atom2_serNum": 31631, "donAcc_type": "standard", "distance": 2.500, "atom1_id": "///2/1221/N2", "atom2_id": "///2/1645/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2343, "atom1_serNum": 22815, "atom2_serNum": 46339, "donAcc_type": "standard", "distance": 3.762, "atom1_id": "///2/1222/OP1", "atom2_id": "///G/152/NE1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2344, "atom1_serNum": 22831, "atom2_serNum": 31614, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/1222/O6", "atom2_id": "///2/1644/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2345, "atom1_serNum": 22832, "atom2_serNum": 31612, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///2/1222/N1", "atom2_id": "///2/1644/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2346, "atom1_serNum": 22834, "atom2_serNum": 31611, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///2/1222/N2", "atom2_id": "///2/1644/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2347, "atom1_serNum": 22834, "atom2_serNum": 31732, "donAcc_type": "acceptable", "distance": 3.534, "atom1_id": "///2/1222/N2", "atom2_id": "///2/1650/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2348, "atom1_serNum": 22838, "atom2_serNum": 45762, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///2/1223/OP1", "atom2_id": "///G/79/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2349, "atom1_serNum": 22854, "atom2_serNum": 31594, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/1223/N6", "atom2_id": "///2/1643/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2350, "atom1_serNum": 22855, "atom2_serNum": 31592, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///2/1223/N1", "atom2_id": "///2/1643/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2351, "atom1_serNum": 22876, "atom2_serNum": 31572, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///2/1224/O6", "atom2_id": "///2/1642/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2352, "atom1_serNum": 22877, "atom2_serNum": 31571, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///2/1224/N1", "atom2_id": "///2/1642/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2353, "atom1_serNum": 22879, "atom2_serNum": 31571, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///2/1224/N2", "atom2_id": "///2/1642/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2354, "atom1_serNum": 22888, "atom2_serNum": 60588, "donAcc_type": "standard", "distance": 3.790, "atom1_id": "///2/1225/O4'", "atom2_id": "///R/142/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2355, "atom1_serNum": 22892, "atom2_serNum": 29109, "donAcc_type": "acceptable", "distance": 3.253, "atom1_id": "///2/1225/O2'", "atom2_id": "///2/1527/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2356, "atom1_serNum": 22897, "atom2_serNum": 31553, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///2/1225/N3", "atom2_id": "///2/1641/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2357, "atom1_serNum": 22899, "atom2_serNum": 31552, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///2/1225/O4", "atom2_id": "///2/1641/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2358, "atom1_serNum": 22912, "atom2_serNum": 31507, "donAcc_type": "acceptable", "distance": 3.503, "atom1_id": "///2/1226/O2'", "atom2_id": "///2/1639/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2359, "atom1_serNum": 22912, "atom2_serNum": 31530, "donAcc_type": "acceptable", "distance": 2.988, "atom1_id": "///2/1226/O2'", "atom2_id": "///2/1640/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2360, "atom1_serNum": 22920, "atom2_serNum": 31492, "donAcc_type": "standard", "distance": 2.303, "atom1_id": "///2/1226/N1", "atom2_id": "///2/1639/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2361, "atom1_serNum": 22922, "atom2_serNum": 31492, "donAcc_type": "standard", "distance": 3.396, "atom1_id": "///2/1226/N2", "atom2_id": "///2/1639/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2362, "atom1_serNum": 22922, "atom2_serNum": 31527, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///2/1226/N2", "atom2_id": "///2/1640/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2363, "atom1_serNum": 22923, "atom2_serNum": 31530, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///2/1226/N3", "atom2_id": "///2/1640/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2364, "atom1_serNum": 22942, "atom2_serNum": 29207, "donAcc_type": "standard", "distance": 3.470, "atom1_id": "///2/1227/O6", "atom2_id": "///2/1531/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2365, "atom1_serNum": 22943, "atom2_serNum": 29208, "donAcc_type": "standard", "distance": 3.988, "atom1_id": "///2/1227/N1", "atom2_id": "///2/1531/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2366, "atom1_serNum": 22945, "atom2_serNum": 31410, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///2/1227/N2", "atom2_id": "///2/1635/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2367, "atom1_serNum": 22958, "atom2_serNum": 31390, "donAcc_type": "acceptable", "distance": 3.127, "atom1_id": "///2/1228/O2'", "atom2_id": "///2/1634/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2368, "atom1_serNum": 22958, "atom2_serNum": 31400, "donAcc_type": "acceptable", "distance": 2.410, "atom1_id": "///2/1228/O2'", "atom2_id": "///2/1634/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2369, "atom1_serNum": 22965, "atom2_serNum": 29187, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///2/1228/N6", "atom2_id": "///2/1530/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2370, "atom1_serNum": 22966, "atom2_serNum": 29185, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/1228/N1", "atom2_id": "///2/1530/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2371, "atom1_serNum": 22980, "atom2_serNum": 30814, "donAcc_type": "acceptable", "distance": 3.417, "atom1_id": "///2/1229/O2'", "atom2_id": "///2/1607/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2372, "atom1_serNum": 22987, "atom2_serNum": 29167, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///2/1229/O6", "atom2_id": "///2/1529/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2373, "atom1_serNum": 22988, "atom2_serNum": 29165, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/1229/N1", "atom2_id": "///2/1529/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2374, "atom1_serNum": 22990, "atom2_serNum": 29164, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///2/1229/N2", "atom2_id": "///2/1529/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2375, "atom1_serNum": 23003, "atom2_serNum": 32064, "donAcc_type": "acceptable", "distance": 3.082, "atom1_id": "///2/1230/O2'", "atom2_id": "///2/1665/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2376, "atom1_serNum": 23003, "atom2_serNum": 32065, "donAcc_type": "acceptable", "distance": 3.109, "atom1_id": "///2/1230/O2'", "atom2_id": "///2/1665/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2377, "atom1_serNum": 23007, "atom2_serNum": 29147, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///2/1230/O2", "atom2_id": "///2/1528/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2378, "atom1_serNum": 23007, "atom2_serNum": 32067, "donAcc_type": "standard", "distance": 2.735, "atom1_id": "///2/1230/O2", "atom2_id": "///2/1665/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2379, "atom1_serNum": 23008, "atom2_serNum": 29145, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///2/1230/N3", "atom2_id": "///2/1528/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2380, "atom1_serNum": 23010, "atom2_serNum": 29144, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///2/1230/N4", "atom2_id": "///2/1528/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2381, "atom1_serNum": 23014, "atom2_serNum": 62800, "donAcc_type": "standard", "distance": 3.954, "atom1_id": "///2/1231/OP1", "atom2_id": "///T/135/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2382, "atom1_serNum": 23015, "atom2_serNum": 62838, "donAcc_type": "acceptable", "distance": 2.422, "atom1_id": "///2/1231/OP2", "atom2_id": "///T/139/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2383, "atom1_serNum": 23023, "atom2_serNum": 23492, "donAcc_type": "acceptable", "distance": 2.980, "atom1_id": "///2/1231/O2'", "atom2_id": "///2/1253/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2384, "atom1_serNum": 23027, "atom2_serNum": 23492, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///2/1231/O2", "atom2_id": "///2/1253/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2385, "atom1_serNum": 23043, "atom2_serNum": 23059, "donAcc_type": "acceptable", "distance": 3.275, "atom1_id": "///2/1232/O2'", "atom2_id": "///2/1233/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2386, "atom1_serNum": 23047, "atom2_serNum": 29124, "donAcc_type": "standard", "distance": 3.769, "atom1_id": "///2/1232/O2", "atom2_id": "///2/1527/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2387, "atom1_serNum": 23048, "atom2_serNum": 29101, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///2/1232/N3", "atom2_id": "///2/1526/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2388, "atom1_serNum": 23063, "atom2_serNum": 23465, "donAcc_type": "acceptable", "distance": 3.195, "atom1_id": "///2/1233/O2'", "atom2_id": "///2/1252/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2389, "atom1_serNum": 23063, "atom2_serNum": 23514, "donAcc_type": "acceptable", "distance": 3.017, "atom1_id": "///2/1233/O2'", "atom2_id": "///2/1254/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2390, "atom1_serNum": 23070, "atom2_serNum": 29081, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///2/1233/O6", "atom2_id": "///2/1525/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2391, "atom1_serNum": 23071, "atom2_serNum": 29079, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1233/N1", "atom2_id": "///2/1525/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2392, "atom1_serNum": 23073, "atom2_serNum": 23469, "donAcc_type": "standard", "distance": 3.083, "atom1_id": "///2/1233/N2", "atom2_id": "///2/1252/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2393, "atom1_serNum": 23073, "atom2_serNum": 29078, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///2/1233/N2", "atom2_id": "///2/1525/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2394, "atom1_serNum": 23074, "atom2_serNum": 23465, "donAcc_type": "acceptable", "distance": 3.044, "atom1_id": "///2/1233/N3", "atom2_id": "///2/1252/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2395, "atom1_serNum": 23077, "atom2_serNum": 23303, "donAcc_type": "questionable", "distance": 3.196, "atom1_id": "///2/1234/OP1", "atom2_id": "///2/1244/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2396, "atom1_serNum": 23084, "atom2_serNum": 23346, "donAcc_type": "standard", "distance": 3.583, "atom1_id": "///2/1234/O3'", "atom2_id": "///2/1246/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2397, "atom1_serNum": 23090, "atom2_serNum": 29061, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///2/1234/O2", "atom2_id": "///2/1524/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2398, "atom1_serNum": 23091, "atom2_serNum": 29059, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///2/1234/N3", "atom2_id": "///2/1524/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2399, "atom1_serNum": 23093, "atom2_serNum": 29058, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///2/1234/N4", "atom2_id": "///2/1524/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2400, "atom1_serNum": 23113, "atom2_serNum": 29038, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///2/1235/O6", "atom2_id": "///2/1523/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2401, "atom1_serNum": 23114, "atom2_serNum": 29036, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///2/1235/N1", "atom2_id": "///2/1523/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2402, "atom1_serNum": 23116, "atom2_serNum": 29035, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///2/1235/N2", "atom2_id": "///2/1523/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2403, "atom1_serNum": 23136, "atom2_serNum": 28996, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///2/1236/O6", "atom2_id": "///2/1521/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2404, "atom1_serNum": 23137, "atom2_serNum": 28994, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1236/N1", "atom2_id": "///2/1521/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2405, "atom1_serNum": 23139, "atom2_serNum": 28993, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///2/1236/N2", "atom2_id": "///2/1521/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2406, "atom1_serNum": 23139, "atom2_serNum": 29017, "donAcc_type": "standard", "distance": 2.636, "atom1_id": "///2/1236/N2", "atom2_id": "///2/1522/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2407, "atom1_serNum": 23156, "atom2_serNum": 28976, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///2/1237/O2", "atom2_id": "///2/1520/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2408, "atom1_serNum": 23157, "atom2_serNum": 28974, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/1237/N3", "atom2_id": "///2/1520/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2409, "atom1_serNum": 23159, "atom2_serNum": 28973, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/1237/N4", "atom2_id": "///2/1520/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2410, "atom1_serNum": 23176, "atom2_serNum": 23261, "donAcc_type": "standard", "distance": 3.436, "atom1_id": "///2/1238/O2", "atom2_id": "///2/1242/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2411, "atom1_serNum": 23177, "atom2_serNum": 23260, "donAcc_type": "standard", "distance": 3.555, "atom1_id": "///2/1238/N3", "atom2_id": "///2/1242/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2412, "atom1_serNum": 23183, "atom2_serNum": 59484, "donAcc_type": "standard", "distance": 3.359, "atom1_id": "///2/1239/OP1", "atom2_id": "///Q/124/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2413, "atom1_serNum": 23192, "atom2_serNum": 23238, "donAcc_type": "acceptable", "distance": 2.743, "atom1_id": "///2/1239/O2'", "atom2_id": "///2/1241/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2414, "atom1_serNum": 23197, "atom2_serNum": 23248, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///2/1239/N3", "atom2_id": "///2/1242/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2415, "atom1_serNum": 23203, "atom2_serNum": 59484, "donAcc_type": "standard", "distance": 3.291, "atom1_id": "///2/1240/OP1", "atom2_id": "///Q/124/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2416, "atom1_serNum": 23204, "atom2_serNum": 59484, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/1240/OP2", "atom2_id": "///Q/124/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2417, "atom1_serNum": 23208, "atom2_serNum": 59284, "donAcc_type": "standard", "distance": 2.599, "atom1_id": "///2/1240/O4'", "atom2_id": "///Q/100/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2418, "atom1_serNum": 23212, "atom2_serNum": 23784, "donAcc_type": "acceptable", "distance": 3.358, "atom1_id": "///2/1240/O2'", "atom2_id": "///2/1267/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2419, "atom1_serNum": 23216, "atom2_serNum": 23788, "donAcc_type": "questionable", "distance": 3.293, "atom1_id": "///2/1240/N7", "atom2_id": "///2/1267/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2420, "atom1_serNum": 23219, "atom2_serNum": 28880, "donAcc_type": "acceptable", "distance": 3.455, "atom1_id": "///2/1240/N6", "atom2_id": "///2/1516/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2421, "atom1_serNum": 23234, "atom2_serNum": 23764, "donAcc_type": "acceptable", "distance": 2.650, "atom1_id": "///2/1241/O2'", "atom2_id": "///2/1266/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2422, "atom1_serNum": 23234, "atom2_serNum": 23768, "donAcc_type": "acceptable", "distance": 3.205, "atom1_id": "///2/1241/O2'", "atom2_id": "///2/1266/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2423, "atom1_serNum": 23242, "atom2_serNum": 28880, "donAcc_type": "acceptable", "distance": 3.190, "atom1_id": "///2/1241/N1", "atom2_id": "///2/1516/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2424, "atom1_serNum": 23244, "atom2_serNum": 28890, "donAcc_type": "standard", "distance": 2.772, "atom1_id": "///2/1241/N3", "atom2_id": "///2/1516/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2425, "atom1_serNum": 23256, "atom2_serNum": 23267, "donAcc_type": "acceptable", "distance": 3.093, "atom1_id": "///2/1242/O2'", "atom2_id": "///2/1243/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2426, "atom1_serNum": 23256, "atom2_serNum": 28970, "donAcc_type": "acceptable", "distance": 3.403, "atom1_id": "///2/1242/O2'", "atom2_id": "///2/1520/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2427, "atom1_serNum": 23263, "atom2_serNum": 28966, "donAcc_type": "acceptable", "distance": 3.144, "atom1_id": "///2/1242/O4", "atom2_id": "///2/1520/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2428, "atom1_serNum": 23268, "atom2_serNum": 28926, "donAcc_type": "acceptable", "distance": 2.984, "atom1_id": "///2/1243/OP2", "atom2_id": "///2/1518/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2429, "atom1_serNum": 23303, "atom2_serNum": 23583, "donAcc_type": "standard", "distance": 3.485, "atom1_id": "///2/1244/O4", "atom2_id": "///2/1257/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2430, "atom1_serNum": 23316, "atom2_serNum": 28364, "donAcc_type": "acceptable", "distance": 2.641, "atom1_id": "///2/1245/O2'", "atom2_id": "///2/1492/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2431, "atom1_serNum": 23323, "atom2_serNum": 23514, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///2/1245/O6", "atom2_id": "///2/1254/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2432, "atom1_serNum": 23324, "atom2_serNum": 23512, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/1245/N1", "atom2_id": "///2/1254/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2433, "atom1_serNum": 23326, "atom2_serNum": 23511, "donAcc_type": "standard", "distance": 2.733, "atom1_id": "///2/1245/N2", "atom2_id": "///2/1254/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2434, "atom1_serNum": 23339, "atom2_serNum": 23439, "donAcc_type": "acceptable", "distance": 3.365, "atom1_id": "///2/1246/O2'", "atom2_id": "///2/1251/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2435, "atom1_serNum": 23349, "atom2_serNum": 23443, "donAcc_type": "acceptable", "distance": 2.959, "atom1_id": "///2/1246/N3", "atom2_id": "///2/1251/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2436, "atom1_serNum": 23381, "atom2_serNum": 23394, "donAcc_type": "acceptable", "distance": 3.017, "atom1_id": "///2/1248/O2'", "atom2_id": "///2/1249/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2437, "atom1_serNum": 23381, "atom2_serNum": 60616, "donAcc_type": "acceptable", "distance": 3.548, "atom1_id": "///2/1248/O2'", "atom2_id": "///R/146/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2438, "atom1_serNum": 23385, "atom2_serNum": 60625, "donAcc_type": "standard", "distance": 3.829, "atom1_id": "///2/1248/O2", "atom2_id": "///R/146/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2439, "atom1_serNum": 23392, "atom2_serNum": 23434, "donAcc_type": "questionable", "distance": 2.754, "atom1_id": "///2/1249/OP1", "atom2_id": "///2/1251/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2440, "atom1_serNum": 23393, "atom2_serNum": 23421, "donAcc_type": "acceptable", "distance": 2.639, "atom1_id": "///2/1249/OP2", "atom2_id": "///2/1250/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2441, "atom1_serNum": 23413, "atom2_serNum": 60597, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///2/1250/OP2", "atom2_id": "///R/143/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2442, "atom1_serNum": 23419, "atom2_serNum": 64419, "donAcc_type": "questionable", "distance": 3.040, "atom1_id": "///2/1250/O3'", "atom2_id": "///V/72/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2443, "atom1_serNum": 23421, "atom2_serNum": 23434, "donAcc_type": "acceptable", "distance": 2.911, "atom1_id": "///2/1250/O2'", "atom2_id": "///2/1251/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2444, "atom1_serNum": 23436, "atom2_serNum": 64419, "donAcc_type": "questionable", "distance": 2.824, "atom1_id": "///2/1251/O5'", "atom2_id": "///V/72/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2445, "atom1_serNum": 23450, "atom2_serNum": 60627, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///2/1251/N6", "atom2_id": "///R/146/OXT", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2446, "atom1_serNum": 23456, "atom2_serNum": 64439, "donAcc_type": "standard", "distance": 2.361, "atom1_id": "///2/1252/OP1", "atom2_id": "///V/75/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2447, "atom1_serNum": 23472, "atom2_serNum": 60619, "donAcc_type": "standard", "distance": 2.421, "atom1_id": "///2/1252/N4", "atom2_id": "///R/146/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2448, "atom1_serNum": 23477, "atom2_serNum": 29104, "donAcc_type": "standard", "distance": 2.469, "atom1_id": "///2/1253/OP2", "atom2_id": "///2/1526/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2449, "atom1_serNum": 23485, "atom2_serNum": 32078, "donAcc_type": "acceptable", "distance": 3.397, "atom1_id": "///2/1253/O2'", "atom2_id": "///2/1666/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2450, "atom1_serNum": 23507, "atom2_serNum": 64377, "donAcc_type": "acceptable", "distance": 3.381, "atom1_id": "///2/1254/O2'", "atom2_id": "///V/66/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2451, "atom1_serNum": 23507, "atom2_serNum": 64411, "donAcc_type": "acceptable", "distance": 2.896, "atom1_id": "///2/1254/O2'", "atom2_id": "///V/71/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2452, "atom1_serNum": 23518, "atom2_serNum": 23550, "donAcc_type": "acceptable", "distance": 2.352, "atom1_id": "///2/1255/OP1", "atom2_id": "///2/1256/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2453, "atom1_serNum": 23525, "atom2_serNum": 71500, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///2/1255/O3'", "atom2_id": "///e/40/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2454, "atom1_serNum": 23527, "atom2_serNum": 23542, "donAcc_type": "acceptable", "distance": 3.029, "atom1_id": "///2/1255/O2'", "atom2_id": "///2/1256/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2455, "atom1_serNum": 23527, "atom2_serNum": 71500, "donAcc_type": "acceptable", "distance": 3.180, "atom1_id": "///2/1255/O2'", "atom2_id": "///e/40/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2456, "atom1_serNum": 23537, "atom2_serNum": 28413, "donAcc_type": "acceptable", "distance": 3.668, "atom1_id": "///2/1255/N2", "atom2_id": "///2/1494/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2457, "atom1_serNum": 23554, "atom2_serNum": 64368, "donAcc_type": "standard", "distance": 3.582, "atom1_id": "///2/1256/N7", "atom2_id": "///V/66/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2458, "atom1_serNum": 23558, "atom2_serNum": 31908, "donAcc_type": "acceptable", "distance": 3.265, "atom1_id": "///2/1256/N1", "atom2_id": "///2/1658/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2459, "atom1_serNum": 23565, "atom2_serNum": 31931, "donAcc_type": "acceptable", "distance": 2.261, "atom1_id": "///2/1257/OP2", "atom2_id": "///2/1659/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2460, "atom1_serNum": 23580, "atom2_serNum": 28417, "donAcc_type": "questionable", "distance": 3.102, "atom1_id": "///2/1257/O6", "atom2_id": "///2/1494/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2461, "atom1_serNum": 23603, "atom2_serNum": 31947, "donAcc_type": "standard", "distance": 3.459, "atom1_id": "///2/1258/N6", "atom2_id": "///2/1660/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2462, "atom1_serNum": 23604, "atom2_serNum": 32013, "donAcc_type": "acceptable", "distance": 3.138, "atom1_id": "///2/1258/N1", "atom2_id": "///2/1663/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2463, "atom1_serNum": 23618, "atom2_serNum": 23706, "donAcc_type": "acceptable", "distance": 3.235, "atom1_id": "///2/1259/O2'", "atom2_id": "///2/1263/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2464, "atom1_serNum": 23618, "atom2_serNum": 23707, "donAcc_type": "acceptable", "distance": 3.027, "atom1_id": "///2/1259/O2'", "atom2_id": "///2/1263/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2465, "atom1_serNum": 23618, "atom2_serNum": 23729, "donAcc_type": "acceptable", "distance": 3.044, "atom1_id": "///2/1259/O2'", "atom2_id": "///2/1264/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2466, "atom1_serNum": 23625, "atom2_serNum": 28937, "donAcc_type": "standard", "distance": 3.195, "atom1_id": "///2/1259/N6", "atom2_id": "///2/1519/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2467, "atom1_serNum": 23625, "atom2_serNum": 28939, "donAcc_type": "standard", "distance": 2.411, "atom1_id": "///2/1259/N6", "atom2_id": "///2/1519/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2468, "atom1_serNum": 23625, "atom2_serNum": 28942, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///2/1259/N6", "atom2_id": "///2/1519/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2469, "atom1_serNum": 23648, "atom2_serNum": 31044, "donAcc_type": "standard", "distance": 2.568, "atom1_id": "///2/1260/N1", "atom2_id": "///2/1617/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2470, "atom1_serNum": 23653, "atom2_serNum": 28910, "donAcc_type": "questionable", "distance": 3.303, "atom1_id": "///2/1261/OP1", "atom2_id": "///2/1517/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2471, "atom1_serNum": 23666, "atom2_serNum": 31064, "donAcc_type": "standard", "distance": 2.472, "atom1_id": "///2/1261/O2", "atom2_id": "///2/1618/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2472, "atom1_serNum": 23666, "atom2_serNum": 71260, "donAcc_type": "standard", "distance": 3.273, "atom1_id": "///2/1261/O2", "atom2_id": "///e/10/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2473, "atom1_serNum": 23669, "atom2_serNum": 31978, "donAcc_type": "questionable", "distance": 3.117, "atom1_id": "///2/1261/N4", "atom2_id": "///2/1661/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2474, "atom1_serNum": 23678, "atom2_serNum": 71260, "donAcc_type": "standard", "distance": 3.745, "atom1_id": "///2/1262/O4'", "atom2_id": "///e/10/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2475, "atom1_serNum": 23686, "atom2_serNum": 71277, "donAcc_type": "standard", "distance": 2.394, "atom1_id": "///2/1262/O2", "atom2_id": "///e/12/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2476, "atom1_serNum": 23686, "atom2_serNum": 71303, "donAcc_type": "standard", "distance": 3.377, "atom1_id": "///2/1262/O2", "atom2_id": "///e/16/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2477, "atom1_serNum": 23686, "atom2_serNum": 71312, "donAcc_type": "standard", "distance": 2.650, "atom1_id": "///2/1262/O2", "atom2_id": "///e/17/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2478, "atom1_serNum": 23687, "atom2_serNum": 71303, "donAcc_type": "standard", "distance": 3.277, "atom1_id": "///2/1262/N3", "atom2_id": "///e/16/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2479, "atom1_serNum": 23694, "atom2_serNum": 23722, "donAcc_type": "acceptable", "distance": 2.523, "atom1_id": "///2/1263/OP2", "atom2_id": "///2/1264/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2480, "atom1_serNum": 23702, "atom2_serNum": 71310, "donAcc_type": "acceptable", "distance": 3.001, "atom1_id": "///2/1263/O2'", "atom2_id": "///e/16/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2481, "atom1_serNum": 23709, "atom2_serNum": 28910, "donAcc_type": "questionable", "distance": 2.833, "atom1_id": "///2/1263/O4", "atom2_id": "///2/1517/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2482, "atom1_serNum": 23709, "atom2_serNum": 28933, "donAcc_type": "standard", "distance": 3.364, "atom1_id": "///2/1263/O4", "atom2_id": "///2/1518/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2483, "atom1_serNum": 23713, "atom2_serNum": 71403, "donAcc_type": "standard", "distance": 3.095, "atom1_id": "///2/1264/OP1", "atom2_id": "///e/28/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2484, "atom1_serNum": 23726, "atom2_serNum": 23771, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///2/1264/O2", "atom2_id": "///2/1266/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2485, "atom1_serNum": 23726, "atom2_serNum": 28911, "donAcc_type": "standard", "distance": 3.338, "atom1_id": "///2/1264/O2", "atom2_id": "///2/1517/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2486, "atom1_serNum": 23729, "atom2_serNum": 28933, "donAcc_type": "questionable", "distance": 3.126, "atom1_id": "///2/1264/N4", "atom2_id": "///2/1518/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2487, "atom1_serNum": 23738, "atom2_serNum": 25043, "donAcc_type": "acceptable", "distance": 3.232, "atom1_id": "///2/1265/O4'", "atom2_id": "///2/1326/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2488, "atom1_serNum": 23742, "atom2_serNum": 25041, "donAcc_type": "acceptable", "distance": 3.543, "atom1_id": "///2/1265/O2'", "atom2_id": "///2/1326/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2489, "atom1_serNum": 23742, "atom2_serNum": 25055, "donAcc_type": "acceptable", "distance": 2.248, "atom1_id": "///2/1265/O2'", "atom2_id": "///2/1327/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2490, "atom1_serNum": 23742, "atom2_serNum": 28420, "donAcc_type": "acceptable", "distance": 3.273, "atom1_id": "///2/1265/O2'", "atom2_id": "///2/1494/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2491, "atom1_serNum": 23750, "atom2_serNum": 28913, "donAcc_type": "standard", "distance": 3.594, "atom1_id": "///2/1265/N1", "atom2_id": "///2/1517/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2492, "atom1_serNum": 23768, "atom2_serNum": 28890, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///2/1266/O2", "atom2_id": "///2/1516/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2493, "atom1_serNum": 23769, "atom2_serNum": 28888, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///2/1266/N3", "atom2_id": "///2/1516/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2494, "atom1_serNum": 23771, "atom2_serNum": 28887, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///2/1266/N4", "atom2_id": "///2/1516/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2495, "atom1_serNum": 23784, "atom2_serNum": 23800, "donAcc_type": "acceptable", "distance": 3.253, "atom1_id": "///2/1267/O2'", "atom2_id": "///2/1268/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2496, "atom1_serNum": 23789, "atom2_serNum": 28865, "donAcc_type": "standard", "distance": 3.210, "atom1_id": "///2/1267/N3", "atom2_id": "///2/1515/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2497, "atom1_serNum": 23791, "atom2_serNum": 28864, "donAcc_type": "standard", "distance": 2.427, "atom1_id": "///2/1267/N4", "atom2_id": "///2/1515/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2498, "atom1_serNum": 23791, "atom2_serNum": 28887, "donAcc_type": "standard", "distance": 3.141, "atom1_id": "///2/1267/N4", "atom2_id": "///2/1516/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2499, "atom1_serNum": 23804, "atom2_serNum": 59263, "donAcc_type": "acceptable", "distance": 3.159, "atom1_id": "///2/1268/O2'", "atom2_id": "///Q/97/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2500, "atom1_serNum": 23804, "atom2_serNum": 59279, "donAcc_type": "acceptable", "distance": 3.067, "atom1_id": "///2/1268/O2'", "atom2_id": "///Q/100/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2501, "atom1_serNum": 23808, "atom2_serNum": 59263, "donAcc_type": "acceptable", "distance": 2.266, "atom1_id": "///2/1268/O2", "atom2_id": "///Q/97/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2502, "atom1_serNum": 23808, "atom2_serNum": 59275, "donAcc_type": "questionable", "distance": 2.857, "atom1_id": "///2/1268/O2", "atom2_id": "///Q/99/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2503, "atom1_serNum": 23809, "atom2_serNum": 28844, "donAcc_type": "standard", "distance": 3.473, "atom1_id": "///2/1268/N3", "atom2_id": "///2/1514/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2504, "atom1_serNum": 23811, "atom2_serNum": 28841, "donAcc_type": "standard", "distance": 3.600, "atom1_id": "///2/1268/N4", "atom2_id": "///2/1514/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2505, "atom1_serNum": 23834, "atom2_serNum": 24457, "donAcc_type": "standard", "distance": 2.791, "atom1_id": "///2/1269/N2", "atom2_id": "///2/1298/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2506, "atom1_serNum": 23834, "atom2_serNum": 28818, "donAcc_type": "standard", "distance": 3.621, "atom1_id": "///2/1269/N2", "atom2_id": "///2/1513/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2507, "atom1_serNum": 23843, "atom2_serNum": 24460, "donAcc_type": "standard", "distance": 3.981, "atom1_id": "///2/1270/O4'", "atom2_id": "///2/1298/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2508, "atom1_serNum": 23847, "atom2_serNum": 23863, "donAcc_type": "acceptable", "distance": 2.648, "atom1_id": "///2/1270/O2'", "atom2_id": "///2/1271/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2509, "atom1_serNum": 23847, "atom2_serNum": 23866, "donAcc_type": "acceptable", "distance": 2.485, "atom1_id": "///2/1270/O2'", "atom2_id": "///2/1271/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2510, "atom1_serNum": 23847, "atom2_serNum": 24522, "donAcc_type": "acceptable", "distance": 3.557, "atom1_id": "///2/1270/O2'", "atom2_id": "///2/1301/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2511, "atom1_serNum": 23857, "atom2_serNum": 24457, "donAcc_type": "standard", "distance": 2.668, "atom1_id": "///2/1270/N2", "atom2_id": "///2/1298/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2512, "atom1_serNum": 23857, "atom2_serNum": 28818, "donAcc_type": "standard", "distance": 2.283, "atom1_id": "///2/1270/N2", "atom2_id": "///2/1513/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2513, "atom1_serNum": 23875, "atom2_serNum": 28798, "donAcc_type": "questionable", "distance": 2.980, "atom1_id": "///2/1271/N3", "atom2_id": "///2/1512/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2514, "atom1_serNum": 23877, "atom2_serNum": 28799, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///2/1271/N4", "atom2_id": "///2/1512/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2515, "atom1_serNum": 23894, "atom2_serNum": 23940, "donAcc_type": "standard", "distance": 2.347, "atom1_id": "///2/1272/O2", "atom2_id": "///2/1274/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2516, "atom1_serNum": 23897, "atom2_serNum": 28778, "donAcc_type": "standard", "distance": 3.627, "atom1_id": "///2/1272/N4", "atom2_id": "///2/1511/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2517, "atom1_serNum": 23902, "atom2_serNum": 72179, "donAcc_type": "standard", "distance": 3.508, "atom1_id": "///2/1273/OP2", "atom2_id": "///g/92/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2518, "atom1_serNum": 23910, "atom2_serNum": 23914, "donAcc_type": "acceptable", "distance": 2.640, "atom1_id": "///2/1273/O2'", "atom2_id": "///2/1273/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2519, "atom1_serNum": 23910, "atom2_serNum": 28672, "donAcc_type": "acceptable", "distance": 3.221, "atom1_id": "///2/1273/O2'", "atom2_id": "///2/1506/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2520, "atom1_serNum": 23914, "atom2_serNum": 28716, "donAcc_type": "standard", "distance": 2.573, "atom1_id": "///2/1273/O2", "atom2_id": "///2/1508/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2521, "atom1_serNum": 23914, "atom2_serNum": 28761, "donAcc_type": "standard", "distance": 2.735, "atom1_id": "///2/1273/O2", "atom2_id": "///2/1510/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2522, "atom1_serNum": 23915, "atom2_serNum": 28716, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///2/1273/N3", "atom2_id": "///2/1508/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2523, "atom1_serNum": 23915, "atom2_serNum": 28759, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/1273/N3", "atom2_id": "///2/1510/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2524, "atom1_serNum": 23917, "atom2_serNum": 28713, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///2/1273/N4", "atom2_id": "///2/1508/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2525, "atom1_serNum": 23917, "atom2_serNum": 28758, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///2/1273/N4", "atom2_id": "///2/1510/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2526, "atom1_serNum": 23921, "atom2_serNum": 53369, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///2/1274/OP1", "atom2_id": "///L/1/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2527, "atom1_serNum": 23930, "atom2_serNum": 28716, "donAcc_type": "acceptable", "distance": 3.646, "atom1_id": "///2/1274/O2'", "atom2_id": "///2/1508/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2528, "atom1_serNum": 23930, "atom2_serNum": 28761, "donAcc_type": "acceptable", "distance": 3.179, "atom1_id": "///2/1274/O2'", "atom2_id": "///2/1510/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2529, "atom1_serNum": 23934, "atom2_serNum": 28774, "donAcc_type": "acceptable", "distance": 2.902, "atom1_id": "///2/1274/N7", "atom2_id": "///2/1511/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2530, "atom1_serNum": 23937, "atom2_serNum": 28774, "donAcc_type": "acceptable", "distance": 2.430, "atom1_id": "///2/1274/O6", "atom2_id": "///2/1511/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2531, "atom1_serNum": 23945, "atom2_serNum": 53749, "donAcc_type": "standard", "distance": 3.364, "atom1_id": "///2/1275/OP2", "atom2_id": "///L/47/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2532, "atom1_serNum": 23946, "atom2_serNum": 28671, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///2/1275/O5'", "atom2_id": "///2/1506/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2533, "atom1_serNum": 23949, "atom2_serNum": 28671, "donAcc_type": "standard", "distance": 2.425, "atom1_id": "///2/1275/O4'", "atom2_id": "///2/1506/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2534, "atom1_serNum": 23953, "atom2_serNum": 24941, "donAcc_type": "acceptable", "distance": 3.504, "atom1_id": "///2/1275/O2'", "atom2_id": "///2/1321/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2535, "atom1_serNum": 23976, "atom2_serNum": 53777, "donAcc_type": "acceptable", "distance": 3.205, "atom1_id": "///2/1276/O2'", "atom2_id": "///L/51/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2536, "atom1_serNum": 23976, "atom2_serNum": 53800, "donAcc_type": "acceptable", "distance": 2.449, "atom1_id": "///2/1276/O2'", "atom2_id": "///L/54/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2537, "atom1_serNum": 23980, "atom2_serNum": 24941, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///2/1276/N7", "atom2_id": "///2/1321/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2538, "atom1_serNum": 23983, "atom2_serNum": 24931, "donAcc_type": "acceptable", "distance": 2.840, "atom1_id": "///2/1276/N6", "atom2_id": "///2/1321/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2539, "atom1_serNum": 23983, "atom2_serNum": 24942, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///2/1276/N6", "atom2_id": "///2/1321/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2540, "atom1_serNum": 23994, "atom2_serNum": 53800, "donAcc_type": "acceptable", "distance": 3.573, "atom1_id": "///2/1277/O4'", "atom2_id": "///L/54/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2541, "atom1_serNum": 24002, "atom2_serNum": 24918, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///2/1277/O2", "atom2_id": "///2/1320/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2542, "atom1_serNum": 24003, "atom2_serNum": 24916, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/1277/N3", "atom2_id": "///2/1320/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2543, "atom1_serNum": 24005, "atom2_serNum": 24915, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///2/1277/N4", "atom2_id": "///2/1320/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2544, "atom1_serNum": 24025, "atom2_serNum": 24895, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/1278/N6", "atom2_id": "///2/1319/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2545, "atom1_serNum": 24026, "atom2_serNum": 24893, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///2/1278/N1", "atom2_id": "///2/1319/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2546, "atom1_serNum": 24044, "atom2_serNum": 24875, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///2/1279/O2", "atom2_id": "///2/1318/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2547, "atom1_serNum": 24045, "atom2_serNum": 24873, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///2/1279/N3", "atom2_id": "///2/1318/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2548, "atom1_serNum": 24047, "atom2_serNum": 24872, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///2/1279/N4", "atom2_id": "///2/1318/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2549, "atom1_serNum": 24067, "atom2_serNum": 24852, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///2/1280/O6", "atom2_id": "///2/1317/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2550, "atom1_serNum": 24068, "atom2_serNum": 24850, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1280/N1", "atom2_id": "///2/1317/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2551, "atom1_serNum": 24070, "atom2_serNum": 24849, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///2/1280/N2", "atom2_id": "///2/1317/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2552, "atom1_serNum": 24090, "atom2_serNum": 24832, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1281/O6", "atom2_id": "///2/1316/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2553, "atom1_serNum": 24091, "atom2_serNum": 24830, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/1281/N1", "atom2_id": "///2/1316/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2554, "atom1_serNum": 24093, "atom2_serNum": 24829, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///2/1281/N2", "atom2_id": "///2/1316/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2555, "atom1_serNum": 24098, "atom2_serNum": 56105, "donAcc_type": "standard", "distance": 2.613, "atom1_id": "///2/1282/OP2", "atom2_id": "///N/102/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2556, "atom1_serNum": 24110, "atom2_serNum": 56105, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///2/1282/N7", "atom2_id": "///N/102/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2557, "atom1_serNum": 24124, "atom2_serNum": 24212, "donAcc_type": "questionable", "distance": 3.174, "atom1_id": "///2/1283/O4'", "atom2_id": "///2/1287/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2558, "atom1_serNum": 24128, "atom2_serNum": 24771, "donAcc_type": "acceptable", "distance": 2.818, "atom1_id": "///2/1283/O2'", "atom2_id": "///2/1313/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2559, "atom1_serNum": 24135, "atom2_serNum": 56100, "donAcc_type": "standard", "distance": 2.462, "atom1_id": "///2/1283/N4", "atom2_id": "///N/102/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2560, "atom1_serNum": 24139, "atom2_serNum": 24170, "donAcc_type": "acceptable", "distance": 3.243, "atom1_id": "///2/1284/OP1", "atom2_id": "///2/1285/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2561, "atom1_serNum": 24141, "atom2_serNum": 24189, "donAcc_type": "questionable", "distance": 3.284, "atom1_id": "///2/1284/O5'", "atom2_id": "///2/1286/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2562, "atom1_serNum": 24148, "atom2_serNum": 24161, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///2/1284/O2'", "atom2_id": "///2/1285/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2563, "atom1_serNum": 24155, "atom2_serNum": 24763, "donAcc_type": "acceptable", "distance": 2.518, "atom1_id": "///2/1284/N6", "atom2_id": "///2/1313/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2564, "atom1_serNum": 24155, "atom2_serNum": 56010, "donAcc_type": "standard", "distance": 2.579, "atom1_id": "///2/1284/N6", "atom2_id": "///N/91/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2565, "atom1_serNum": 24162, "atom2_serNum": 55569, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///2/1285/OP2", "atom2_id": "///N/35/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2566, "atom1_serNum": 24170, "atom2_serNum": 72243, "donAcc_type": "acceptable", "distance": 3.364, "atom1_id": "///2/1285/O2'", "atom2_id": "///g/99/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2567, "atom1_serNum": 24178, "atom2_serNum": 55741, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///2/1285/N1", "atom2_id": "///N/57/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2568, "atom1_serNum": 24180, "atom2_serNum": 55738, "donAcc_type": "standard", "distance": 3.250, "atom1_id": "///2/1285/N2", "atom2_id": "///N/57/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2569, "atom1_serNum": 24180, "atom2_serNum": 55741, "donAcc_type": "standard", "distance": 2.480, "atom1_id": "///2/1285/N2", "atom2_id": "///N/57/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2570, "atom1_serNum": 24184, "atom2_serNum": 72231, "donAcc_type": "questionable", "distance": 2.840, "atom1_id": "///2/1286/OP1", "atom2_id": "///g/98/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2571, "atom1_serNum": 24184, "atom2_serNum": 72244, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///2/1286/OP1", "atom2_id": "///g/100/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2572, "atom1_serNum": 24193, "atom2_serNum": 24208, "donAcc_type": "acceptable", "distance": 3.018, "atom1_id": "///2/1286/O2'", "atom2_id": "///2/1287/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2573, "atom1_serNum": 24203, "atom2_serNum": 24740, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///2/1286/N2", "atom2_id": "///2/1312/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2574, "atom1_serNum": 24203, "atom2_serNum": 24767, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///2/1286/N2", "atom2_id": "///2/1313/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2575, "atom1_serNum": 24204, "atom2_serNum": 24770, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///2/1286/N3", "atom2_id": "///2/1313/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2576, "atom1_serNum": 24220, "atom2_serNum": 24750, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///2/1287/N7", "atom2_id": "///2/1312/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2577, "atom1_serNum": 24223, "atom2_serNum": 24751, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/1287/N6", "atom2_id": "///2/1312/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2578, "atom1_serNum": 24223, "atom2_serNum": 24792, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///2/1287/N6", "atom2_id": "///2/1314/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2579, "atom1_serNum": 24224, "atom2_serNum": 24790, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///2/1287/N1", "atom2_id": "///2/1314/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2580, "atom1_serNum": 24226, "atom2_serNum": 24810, "donAcc_type": "standard", "distance": 2.480, "atom1_id": "///2/1287/N3", "atom2_id": "///2/1315/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2581, "atom1_serNum": 24236, "atom2_serNum": 24805, "donAcc_type": "acceptable", "distance": 3.576, "atom1_id": "///2/1288/O3'", "atom2_id": "///2/1315/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2582, "atom1_serNum": 24238, "atom2_serNum": 24809, "donAcc_type": "acceptable", "distance": 2.865, "atom1_id": "///2/1288/O2'", "atom2_id": "///2/1315/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2583, "atom1_serNum": 24243, "atom2_serNum": 24725, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///2/1288/N3", "atom2_id": "///2/1311/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2584, "atom1_serNum": 24245, "atom2_serNum": 24727, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///2/1288/O4", "atom2_id": "///2/1311/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2585, "atom1_serNum": 24258, "atom2_serNum": 24274, "donAcc_type": "acceptable", "distance": 3.256, "atom1_id": "///2/1289/O2'", "atom2_id": "///2/1290/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2586, "atom1_serNum": 24262, "atom2_serNum": 24705, "donAcc_type": "standard", "distance": 3.384, "atom1_id": "///2/1289/O2", "atom2_id": "///2/1310/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2587, "atom1_serNum": 24263, "atom2_serNum": 24707, "donAcc_type": "standard", "distance": 3.127, "atom1_id": "///2/1289/N3", "atom2_id": "///2/1310/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2588, "atom1_serNum": 24285, "atom2_serNum": 24687, "donAcc_type": "standard", "distance": 2.191, "atom1_id": "///2/1290/O6", "atom2_id": "///2/1309/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2589, "atom1_serNum": 24285, "atom2_serNum": 72208, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///2/1290/O6", "atom2_id": "///g/95/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2590, "atom1_serNum": 24286, "atom2_serNum": 24685, "donAcc_type": "standard", "distance": 3.056, "atom1_id": "///2/1290/N1", "atom2_id": "///2/1309/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2591, "atom1_serNum": 24288, "atom2_serNum": 72586, "donAcc_type": "standard", "distance": 2.664, "atom1_id": "///2/1290/N2", "atom2_id": "///g/142/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2592, "atom1_serNum": 24293, "atom2_serNum": 24537, "donAcc_type": "acceptable", "distance": 3.598, "atom1_id": "///2/1291/OP2", "atom2_id": "///2/1302/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2593, "atom1_serNum": 24293, "atom2_serNum": 24552, "donAcc_type": "questionable", "distance": 2.882, "atom1_id": "///2/1291/OP2", "atom2_id": "///2/1303/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2594, "atom1_serNum": 24301, "atom2_serNum": 24319, "donAcc_type": "acceptable", "distance": 3.193, "atom1_id": "///2/1291/O2'", "atom2_id": "///2/1292/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2595, "atom1_serNum": 24308, "atom2_serNum": 24667, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1291/N6", "atom2_id": "///2/1308/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2596, "atom1_serNum": 24309, "atom2_serNum": 24665, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///2/1291/N1", "atom2_id": "///2/1308/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2597, "atom1_serNum": 24314, "atom2_serNum": 24528, "donAcc_type": "questionable", "distance": 2.807, "atom1_id": "///2/1292/OP1", "atom2_id": "///2/1302/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2598, "atom1_serNum": 24323, "atom2_serNum": 72621, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///2/1292/O2'", "atom2_id": "///g/147/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2599, "atom1_serNum": 24327, "atom2_serNum": 72621, "donAcc_type": "acceptable", "distance": 2.740, "atom1_id": "///2/1292/O2", "atom2_id": "///g/147/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2600, "atom1_serNum": 24328, "atom2_serNum": 72554, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///2/1292/N3", "atom2_id": "///g/138/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2601, "atom1_serNum": 24330, "atom2_serNum": 24644, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///2/1292/N4", "atom2_id": "///2/1307/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2602, "atom1_serNum": 24339, "atom2_serNum": 72554, "donAcc_type": "standard", "distance": 3.197, "atom1_id": "///2/1293/O4'", "atom2_id": "///g/138/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2603, "atom1_serNum": 24351, "atom2_serNum": 24625, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///2/1293/N1", "atom2_id": "///2/1306/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2604, "atom1_serNum": 24353, "atom2_serNum": 72554, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///2/1293/N3", "atom2_id": "///g/138/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2605, "atom1_serNum": 24372, "atom2_serNum": 24607, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///2/1294/O6", "atom2_id": "///2/1305/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2606, "atom1_serNum": 24373, "atom2_serNum": 24605, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/1294/N1", "atom2_id": "///2/1305/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2607, "atom1_serNum": 24375, "atom2_serNum": 24604, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///2/1294/N2", "atom2_id": "///2/1305/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2608, "atom1_serNum": 24380, "atom2_serNum": 58964, "donAcc_type": "standard", "distance": 3.551, "atom1_id": "///2/1295/OP2", "atom2_id": "///Q/59/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2609, "atom1_serNum": 24395, "atom2_serNum": 24587, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///2/1295/N6", "atom2_id": "///2/1304/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2610, "atom1_serNum": 24395, "atom2_serNum": 24607, "donAcc_type": "questionable", "distance": 2.927, "atom1_id": "///2/1295/N6", "atom2_id": "///2/1305/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2611, "atom1_serNum": 24396, "atom2_serNum": 24585, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///2/1295/N1", "atom2_id": "///2/1304/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2612, "atom1_serNum": 24417, "atom2_serNum": 24567, "donAcc_type": "standard", "distance": 3.146, "atom1_id": "///2/1296/O4", "atom2_id": "///2/1303/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2613, "atom1_serNum": 24417, "atom2_serNum": 24585, "donAcc_type": "standard", "distance": 3.674, "atom1_id": "///2/1296/O4", "atom2_id": "///2/1304/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2614, "atom1_serNum": 24421, "atom2_serNum": 59100, "donAcc_type": "standard", "distance": 3.184, "atom1_id": "///2/1297/OP1", "atom2_id": "///Q/77/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2615, "atom1_serNum": 24430, "atom2_serNum": 24460, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///2/1297/O2'", "atom2_id": "///2/1298/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2616, "atom1_serNum": 24434, "atom2_serNum": 24523, "donAcc_type": "questionable", "distance": 3.140, "atom1_id": "///2/1297/O2", "atom2_id": "///2/1301/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2617, "atom1_serNum": 24434, "atom2_serNum": 24567, "donAcc_type": "standard", "distance": 2.447, "atom1_id": "///2/1297/O2", "atom2_id": "///2/1303/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2618, "atom1_serNum": 24442, "atom2_serNum": 59103, "donAcc_type": "questionable", "distance": 2.766, "atom1_id": "///2/1298/OP2", "atom2_id": "///Q/77/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2619, "atom1_serNum": 24454, "atom2_serNum": 28830, "donAcc_type": "questionable", "distance": 2.994, "atom1_id": "///2/1298/N7", "atom2_id": "///2/1514/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2620, "atom1_serNum": 24473, "atom2_serNum": 24495, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///2/1299/O2'", "atom2_id": "///2/1300/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2621, "atom1_serNum": 24473, "atom2_serNum": 24506, "donAcc_type": "acceptable", "distance": 2.692, "atom1_id": "///2/1299/O2'", "atom2_id": "///2/1301/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2622, "atom1_serNum": 24515, "atom2_serNum": 24551, "donAcc_type": "acceptable", "distance": 2.780, "atom1_id": "///2/1301/O2'", "atom2_id": "///2/1303/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2623, "atom1_serNum": 24537, "atom2_serNum": 24552, "donAcc_type": "acceptable", "distance": 2.932, "atom1_id": "///2/1302/O2'", "atom2_id": "///2/1303/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2624, "atom1_serNum": 24544, "atom2_serNum": 24645, "donAcc_type": "standard", "distance": 2.320, "atom1_id": "///2/1302/O6", "atom2_id": "///2/1307/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2625, "atom1_serNum": 24545, "atom2_serNum": 24647, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/1302/N1", "atom2_id": "///2/1307/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2626, "atom1_serNum": 24547, "atom2_serNum": 24592, "donAcc_type": "standard", "distance": 2.365, "atom1_id": "///2/1302/N2", "atom2_id": "///2/1305/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2627, "atom1_serNum": 24560, "atom2_serNum": 24573, "donAcc_type": "acceptable", "distance": 2.878, "atom1_id": "///2/1303/O2'", "atom2_id": "///2/1304/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2628, "atom1_serNum": 24580, "atom2_serNum": 72162, "donAcc_type": "acceptable", "distance": 2.949, "atom1_id": "///2/1304/O2'", "atom2_id": "///g/90/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2629, "atom1_serNum": 24612, "atom2_serNum": 24647, "donAcc_type": "questionable", "distance": 2.993, "atom1_id": "///2/1306/OP2", "atom2_id": "///2/1307/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2630, "atom1_serNum": 24640, "atom2_serNum": 24656, "donAcc_type": "acceptable", "distance": 3.159, "atom1_id": "///2/1307/O2'", "atom2_id": "///2/1308/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2631, "atom1_serNum": 24658, "atom2_serNum": 72402, "donAcc_type": "standard", "distance": 3.757, "atom1_id": "///2/1308/O3'", "atom2_id": "///g/118/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2632, "atom1_serNum": 24660, "atom2_serNum": 24673, "donAcc_type": "acceptable", "distance": 2.621, "atom1_id": "///2/1308/O2'", "atom2_id": "///2/1309/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2633, "atom1_serNum": 24660, "atom2_serNum": 24676, "donAcc_type": "acceptable", "distance": 2.666, "atom1_id": "///2/1308/O2'", "atom2_id": "///2/1309/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2634, "atom1_serNum": 24671, "atom2_serNum": 72292, "donAcc_type": "acceptable", "distance": 3.595, "atom1_id": "///2/1309/OP1", "atom2_id": "///g/105/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2635, "atom1_serNum": 24680, "atom2_serNum": 72488, "donAcc_type": "acceptable", "distance": 2.284, "atom1_id": "///2/1309/O2'", "atom2_id": "///g/131/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2636, "atom1_serNum": 24687, "atom2_serNum": 72209, "donAcc_type": "questionable", "distance": 2.965, "atom1_id": "///2/1309/N4", "atom2_id": "///g/95/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2637, "atom1_serNum": 24691, "atom2_serNum": 55587, "donAcc_type": "standard", "distance": 2.592, "atom1_id": "///2/1310/OP1", "atom2_id": "///N/36/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2638, "atom1_serNum": 24692, "atom2_serNum": 55587, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///2/1310/OP2", "atom2_id": "///N/36/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2639, "atom1_serNum": 24711, "atom2_serNum": 72595, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///2/1311/OP1", "atom2_id": "///g/143/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2640, "atom1_serNum": 24733, "atom2_serNum": 55596, "donAcc_type": "questionable", "distance": 2.833, "atom1_id": "///2/1312/O5'", "atom2_id": "///N/37/OE2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2641, "atom1_serNum": 24740, "atom2_serNum": 24767, "donAcc_type": "acceptable", "distance": 3.362, "atom1_id": "///2/1312/O2'", "atom2_id": "///2/1313/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2642, "atom1_serNum": 24747, "atom2_serNum": 55586, "donAcc_type": "standard", "distance": 3.253, "atom1_id": "///2/1312/O6", "atom2_id": "///N/36/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2643, "atom1_serNum": 24776, "atom2_serNum": 53408, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///2/1314/OP1", "atom2_id": "///L/5/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2644, "atom1_serNum": 24785, "atom2_serNum": 24798, "donAcc_type": "acceptable", "distance": 3.154, "atom1_id": "///2/1314/O2'", "atom2_id": "///2/1315/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2645, "atom1_serNum": 24785, "atom2_serNum": 53372, "donAcc_type": "acceptable", "distance": 3.635, "atom1_id": "///2/1314/O2'", "atom2_id": "///L/1/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2646, "atom1_serNum": 24785, "atom2_serNum": 53385, "donAcc_type": "acceptable", "distance": 3.637, "atom1_id": "///2/1314/O2'", "atom2_id": "///L/3/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2647, "atom1_serNum": 24852, "atom2_serNum": 24872, "donAcc_type": "standard", "distance": 2.629, "atom1_id": "///2/1317/N4", "atom2_id": "///2/1318/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2648, "atom1_serNum": 24961, "atom2_serNum": 28649, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///2/1322/O6", "atom2_id": "///2/1505/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2649, "atom1_serNum": 24982, "atom2_serNum": 28648, "donAcc_type": "standard", "distance": 3.428, "atom1_id": "///2/1323/N3", "atom2_id": "///2/1505/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2650, "atom1_serNum": 24984, "atom2_serNum": 28649, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///2/1323/O4", "atom2_id": "///2/1505/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2651, "atom1_serNum": 24997, "atom2_serNum": 28751, "donAcc_type": "acceptable", "distance": 2.679, "atom1_id": "///2/1324/O2'", "atom2_id": "///2/1510/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2652, "atom1_serNum": 25004, "atom2_serNum": 28629, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///2/1324/O6", "atom2_id": "///2/1504/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2653, "atom1_serNum": 25005, "atom2_serNum": 28628, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///2/1324/N1", "atom2_id": "///2/1504/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2654, "atom1_serNum": 25007, "atom2_serNum": 28731, "donAcc_type": "acceptable", "distance": 3.585, "atom1_id": "///2/1324/N2", "atom2_id": "///2/1509/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2655, "atom1_serNum": 25007, "atom2_serNum": 28747, "donAcc_type": "standard", "distance": 3.779, "atom1_id": "///2/1324/N2", "atom2_id": "///2/1510/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2656, "atom1_serNum": 25027, "atom2_serNum": 28611, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///2/1325/O6", "atom2_id": "///2/1503/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2657, "atom1_serNum": 25028, "atom2_serNum": 28609, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///2/1325/N1", "atom2_id": "///2/1503/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2658, "atom1_serNum": 25030, "atom2_serNum": 28608, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///2/1325/N2", "atom2_id": "///2/1503/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2659, "atom1_serNum": 25030, "atom2_serNum": 28735, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///2/1325/N2", "atom2_id": "///2/1509/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2660, "atom1_serNum": 25050, "atom2_serNum": 71403, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///2/1326/O4", "atom2_id": "///e/28/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2661, "atom1_serNum": 25054, "atom2_serNum": 28742, "donAcc_type": "questionable", "distance": 3.173, "atom1_id": "///2/1327/OP1", "atom2_id": "///2/1510/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2662, "atom1_serNum": 25070, "atom2_serNum": 28591, "donAcc_type": "standard", "distance": 3.532, "atom1_id": "///2/1327/O6", "atom2_id": "///2/1502/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2663, "atom1_serNum": 25071, "atom2_serNum": 28589, "donAcc_type": "standard", "distance": 3.108, "atom1_id": "///2/1327/N1", "atom2_id": "///2/1502/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2664, "atom1_serNum": 25073, "atom2_serNum": 28588, "donAcc_type": "standard", "distance": 2.551, "atom1_id": "///2/1327/N2", "atom2_id": "///2/1502/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2665, "atom1_serNum": 25086, "atom2_serNum": 25105, "donAcc_type": "acceptable", "distance": 3.137, "atom1_id": "///2/1328/O2'", "atom2_id": "///2/1329/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2666, "atom1_serNum": 25093, "atom2_serNum": 28571, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///2/1328/O6", "atom2_id": "///2/1501/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2667, "atom1_serNum": 25094, "atom2_serNum": 28569, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///2/1328/N1", "atom2_id": "///2/1501/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2668, "atom1_serNum": 25096, "atom2_serNum": 28568, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///2/1328/N2", "atom2_id": "///2/1501/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2669, "atom1_serNum": 25109, "atom2_serNum": 25164, "donAcc_type": "acceptable", "distance": 2.899, "atom1_id": "///2/1329/O2'", "atom2_id": "///2/1332/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2670, "atom1_serNum": 25113, "atom2_serNum": 28549, "donAcc_type": "standard", "distance": 3.788, "atom1_id": "///2/1329/O2", "atom2_id": "///2/1500/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2671, "atom1_serNum": 25114, "atom2_serNum": 28548, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///2/1329/N3", "atom2_id": "///2/1500/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2672, "atom1_serNum": 25129, "atom2_serNum": 28365, "donAcc_type": "acceptable", "distance": 3.288, "atom1_id": "///2/1330/O2'", "atom2_id": "///2/1492/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2673, "atom1_serNum": 25137, "atom2_serNum": 25221, "donAcc_type": "standard", "distance": 3.624, "atom1_id": "///2/1330/N1", "atom2_id": "///2/1334/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2674, "atom1_serNum": 25139, "atom2_serNum": 25218, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///2/1330/N2", "atom2_id": "///2/1334/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2675, "atom1_serNum": 25144, "atom2_serNum": 28303, "donAcc_type": "questionable", "distance": 2.817, "atom1_id": "///2/1331/OP2", "atom2_id": "///2/1489/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2676, "atom1_serNum": 25144, "atom2_serNum": 28305, "donAcc_type": "acceptable", "distance": 3.150, "atom1_id": "///2/1331/OP2", "atom2_id": "///2/1489/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2677, "atom1_serNum": 25144, "atom2_serNum": 28318, "donAcc_type": "questionable", "distance": 2.903, "atom1_id": "///2/1331/OP2", "atom2_id": "///2/1490/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2678, "atom1_serNum": 25144, "atom2_serNum": 28342, "donAcc_type": "questionable", "distance": 3.350, "atom1_id": "///2/1331/OP2", "atom2_id": "///2/1491/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2679, "atom1_serNum": 25145, "atom2_serNum": 28305, "donAcc_type": "acceptable", "distance": 2.916, "atom1_id": "///2/1331/O5'", "atom2_id": "///2/1489/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2680, "atom1_serNum": 25156, "atom2_serNum": 28305, "donAcc_type": "acceptable", "distance": 2.347, "atom1_id": "///2/1331/O2", "atom2_id": "///2/1489/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2681, "atom1_serNum": 25168, "atom2_serNum": 42509, "donAcc_type": "standard", "distance": 3.595, "atom1_id": "///2/1332/O4'", "atom2_id": "///E/145/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2682, "atom1_serNum": 25172, "atom2_serNum": 42504, "donAcc_type": "acceptable", "distance": 2.196, "atom1_id": "///2/1332/O2'", "atom2_id": "///E/145/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2683, "atom1_serNum": 25176, "atom2_serNum": 28400, "donAcc_type": "standard", "distance": 2.702, "atom1_id": "///2/1332/N7", "atom2_id": "///2/1493/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2684, "atom1_serNum": 25179, "atom2_serNum": 28398, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///2/1332/N6", "atom2_id": "///2/1493/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2685, "atom1_serNum": 25180, "atom2_serNum": 28521, "donAcc_type": "acceptable", "distance": 3.697, "atom1_id": "///2/1332/N1", "atom2_id": "///2/1499/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2686, "atom1_serNum": 25185, "atom2_serNum": 42521, "donAcc_type": "standard", "distance": 3.718, "atom1_id": "///2/1333/OP1", "atom2_id": "///E/147/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2687, "atom1_serNum": 25194, "atom2_serNum": 42791, "donAcc_type": "acceptable", "distance": 3.457, "atom1_id": "///2/1333/O2'", "atom2_id": "///E/181/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2688, "atom1_serNum": 25222, "atom2_serNum": 28463, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///2/1334/N1", "atom2_id": "///2/1496/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2689, "atom1_serNum": 25244, "atom2_serNum": 28378, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///2/1335/O6", "atom2_id": "///2/1492/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2690, "atom1_serNum": 25245, "atom2_serNum": 28377, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///2/1335/N1", "atom2_id": "///2/1492/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2691, "atom1_serNum": 25247, "atom2_serNum": 28440, "donAcc_type": "standard", "distance": 3.086, "atom1_id": "///2/1335/N2", "atom2_id": "///2/1495/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2692, "atom1_serNum": 25258, "atom2_serNum": 71537, "donAcc_type": "standard", "distance": 3.294, "atom1_id": "///2/1336/O3'", "atom2_id": "///e/44/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2693, "atom1_serNum": 25264, "atom2_serNum": 28360, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///2/1336/O2", "atom2_id": "///2/1491/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2694, "atom1_serNum": 25265, "atom2_serNum": 28358, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///2/1336/N3", "atom2_id": "///2/1491/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2695, "atom1_serNum": 25267, "atom2_serNum": 28357, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///2/1336/N4", "atom2_id": "///2/1491/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2696, "atom1_serNum": 25271, "atom2_serNum": 71537, "donAcc_type": "standard", "distance": 3.573, "atom1_id": "///2/1337/OP1", "atom2_id": "///e/44/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2697, "atom1_serNum": 25280, "atom2_serNum": 25296, "donAcc_type": "acceptable", "distance": 3.187, "atom1_id": "///2/1337/O2'", "atom2_id": "///2/1338/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2698, "atom1_serNum": 25284, "atom2_serNum": 28337, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///2/1337/O2", "atom2_id": "///2/1490/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2699, "atom1_serNum": 25285, "atom2_serNum": 28335, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1337/N3", "atom2_id": "///2/1490/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2700, "atom1_serNum": 25287, "atom2_serNum": 28334, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///2/1337/N4", "atom2_id": "///2/1490/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2701, "atom1_serNum": 25291, "atom2_serNum": 64445, "donAcc_type": "acceptable", "distance": 3.599, "atom1_id": "///2/1338/OP1", "atom2_id": "///V/76/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2702, "atom1_serNum": 25300, "atom2_serNum": 64425, "donAcc_type": "acceptable", "distance": 3.536, "atom1_id": "///2/1338/O2'", "atom2_id": "///V/74/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2703, "atom1_serNum": 25307, "atom2_serNum": 28290, "donAcc_type": "questionable", "distance": 3.260, "atom1_id": "///2/1338/O6", "atom2_id": "///2/1488/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2704, "atom1_serNum": 25307, "atom2_serNum": 28292, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///2/1338/O6", "atom2_id": "///2/1488/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2705, "atom1_serNum": 25323, "atom2_serNum": 25339, "donAcc_type": "acceptable", "distance": 3.037, "atom1_id": "///2/1339/O2'", "atom2_id": "///2/1340/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2706, "atom1_serNum": 25334, "atom2_serNum": 25374, "donAcc_type": "questionable", "distance": 2.847, "atom1_id": "///2/1340/OP1", "atom2_id": "///2/1342/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2707, "atom1_serNum": 25335, "atom2_serNum": 25363, "donAcc_type": "acceptable", "distance": 2.280, "atom1_id": "///2/1340/OP2", "atom2_id": "///2/1341/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2708, "atom1_serNum": 25348, "atom2_serNum": 28249, "donAcc_type": "standard", "distance": 3.815, "atom1_id": "///2/1340/N3", "atom2_id": "///2/1486/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2709, "atom1_serNum": 25348, "atom2_serNum": 28271, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///2/1340/N3", "atom2_id": "///2/1487/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2710, "atom1_serNum": 25350, "atom2_serNum": 28270, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///2/1340/O4", "atom2_id": "///2/1487/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2711, "atom1_serNum": 25355, "atom2_serNum": 32521, "donAcc_type": "acceptable", "distance": 2.566, "atom1_id": "///2/1341/OP2", "atom2_id": "///2/1687/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2712, "atom1_serNum": 25370, "atom2_serNum": 28228, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///2/1341/N4", "atom2_id": "///2/1485/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2713, "atom1_serNum": 25370, "atom2_serNum": 28249, "donAcc_type": "standard", "distance": 3.240, "atom1_id": "///2/1341/N4", "atom2_id": "///2/1486/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2714, "atom1_serNum": 25383, "atom2_serNum": 28185, "donAcc_type": "acceptable", "distance": 3.488, "atom1_id": "///2/1342/O2'", "atom2_id": "///2/1483/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2715, "atom1_serNum": 25387, "atom2_serNum": 25430, "donAcc_type": "standard", "distance": 3.587, "atom1_id": "///2/1342/O2", "atom2_id": "///2/1344/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2716, "atom1_serNum": 25431, "atom2_serNum": 26299, "donAcc_type": "acceptable", "distance": 2.503, "atom1_id": "///2/1344/N1", "atom2_id": "///2/1385/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2717, "atom1_serNum": 25445, "atom2_serNum": 25464, "donAcc_type": "acceptable", "distance": 3.241, "atom1_id": "///2/1345/O2'", "atom2_id": "///2/1346/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2718, "atom1_serNum": 25445, "atom2_serNum": 28207, "donAcc_type": "acceptable", "distance": 3.331, "atom1_id": "///2/1345/O2'", "atom2_id": "///2/1484/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2719, "atom1_serNum": 25449, "atom2_serNum": 26003, "donAcc_type": "acceptable", "distance": 2.785, "atom1_id": "///2/1345/N7", "atom2_id": "///2/1371/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2720, "atom1_serNum": 25452, "atom2_serNum": 26003, "donAcc_type": "acceptable", "distance": 3.081, "atom1_id": "///2/1345/O6", "atom2_id": "///2/1371/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2721, "atom1_serNum": 25452, "atom2_serNum": 26307, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///2/1345/O6", "atom2_id": "///2/1385/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2722, "atom1_serNum": 25455, "atom2_serNum": 26283, "donAcc_type": "standard", "distance": 3.479, "atom1_id": "///2/1345/N2", "atom2_id": "///2/1384/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2723, "atom1_serNum": 25455, "atom2_serNum": 28209, "donAcc_type": "standard", "distance": 3.134, "atom1_id": "///2/1345/N2", "atom2_id": "///2/1484/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2724, "atom1_serNum": 25472, "atom2_serNum": 26283, "donAcc_type": "questionable", "distance": 3.041, "atom1_id": "///2/1346/O2", "atom2_id": "///2/1384/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2725, "atom1_serNum": 25473, "atom2_serNum": 26265, "donAcc_type": "standard", "distance": 3.862, "atom1_id": "///2/1346/N3", "atom2_id": "///2/1383/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2726, "atom1_serNum": 25473, "atom2_serNum": 26284, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///2/1346/N3", "atom2_id": "///2/1384/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2727, "atom1_serNum": 25475, "atom2_serNum": 26286, "donAcc_type": "standard", "distance": 3.407, "atom1_id": "///2/1346/O4", "atom2_id": "///2/1384/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2728, "atom1_serNum": 25493, "atom2_serNum": 26243, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///2/1347/N3", "atom2_id": "///2/1382/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2729, "atom1_serNum": 25495, "atom2_serNum": 26242, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///2/1347/O4", "atom2_id": "///2/1382/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2730, "atom1_serNum": 25512, "atom2_serNum": 26222, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///2/1348/N7", "atom2_id": "///2/1381/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2731, "atom1_serNum": 25515, "atom2_serNum": 26220, "donAcc_type": "standard", "distance": 2.817, "atom1_id": "///2/1348/O6", "atom2_id": "///2/1381/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2732, "atom1_serNum": 25518, "atom2_serNum": 25797, "donAcc_type": "standard", "distance": 2.439, "atom1_id": "///2/1348/N2", "atom2_id": "///2/1361/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2733, "atom1_serNum": 25538, "atom2_serNum": 26177, "donAcc_type": "standard", "distance": 3.271, "atom1_id": "///2/1349/O6", "atom2_id": "///2/1379/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2734, "atom1_serNum": 25538, "atom2_serNum": 26199, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///2/1349/O6", "atom2_id": "///2/1380/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2735, "atom1_serNum": 25539, "atom2_serNum": 26197, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/1349/N1", "atom2_id": "///2/1380/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2736, "atom1_serNum": 25541, "atom2_serNum": 26196, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///2/1349/N2", "atom2_id": "///2/1380/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2737, "atom1_serNum": 25554, "atom2_serNum": 37062, "donAcc_type": "acceptable", "distance": 2.976, "atom1_id": "///2/1350/O2'", "atom2_id": "///B/110/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2738, "atom1_serNum": 25559, "atom2_serNum": 26178, "donAcc_type": "standard", "distance": 3.009, "atom1_id": "///2/1350/N3", "atom2_id": "///2/1379/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2739, "atom1_serNum": 25561, "atom2_serNum": 26177, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///2/1350/O4", "atom2_id": "///2/1379/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2740, "atom1_serNum": 25582, "atom2_serNum": 25624, "donAcc_type": "standard", "distance": 3.226, "atom1_id": "///2/1351/N1", "atom2_id": "///2/1353/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2741, "atom1_serNum": 25584, "atom2_serNum": 25612, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///2/1351/N2", "atom2_id": "///2/1353/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2742, "atom1_serNum": 25597, "atom2_serNum": 37297, "donAcc_type": "acceptable", "distance": 3.009, "atom1_id": "///2/1352/O2'", "atom2_id": "///B/139/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2743, "atom1_serNum": 25627, "atom2_serNum": 25734, "donAcc_type": "standard", "distance": 3.551, "atom1_id": "///2/1353/N6", "atom2_id": "///2/1358/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2744, "atom1_serNum": 25627, "atom2_serNum": 25735, "donAcc_type": "questionable", "distance": 3.035, "atom1_id": "///2/1353/N6", "atom2_id": "///2/1358/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2745, "atom1_serNum": 25642, "atom2_serNum": 25658, "donAcc_type": "acceptable", "distance": 2.522, "atom1_id": "///2/1354/O2'", "atom2_id": "///2/1355/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2746, "atom1_serNum": 25642, "atom2_serNum": 25677, "donAcc_type": "acceptable", "distance": 3.506, "atom1_id": "///2/1354/O2'", "atom2_id": "///2/1356/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2747, "atom1_serNum": 25649, "atom2_serNum": 25737, "donAcc_type": "questionable", "distance": 2.951, "atom1_id": "///2/1354/O6", "atom2_id": "///2/1358/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2748, "atom1_serNum": 25650, "atom2_serNum": 25700, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/1354/N1", "atom2_id": "///2/1357/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2749, "atom1_serNum": 25652, "atom2_serNum": 25700, "donAcc_type": "standard", "distance": 2.451, "atom1_id": "///2/1354/N2", "atom2_id": "///2/1357/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2750, "atom1_serNum": 25665, "atom2_serNum": 41025, "donAcc_type": "acceptable", "distance": 2.508, "atom1_id": "///2/1355/O2'", "atom2_id": "///D/235/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2751, "atom1_serNum": 25669, "atom2_serNum": 41026, "donAcc_type": "standard", "distance": 2.504, "atom1_id": "///2/1355/O2", "atom2_id": "///D/235/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2752, "atom1_serNum": 25676, "atom2_serNum": 41051, "donAcc_type": "standard", "distance": 2.784, "atom1_id": "///2/1356/OP1", "atom2_id": "///D/238/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2753, "atom1_serNum": 25678, "atom2_serNum": 41051, "donAcc_type": "standard", "distance": 3.232, "atom1_id": "///2/1356/O5'", "atom2_id": "///D/238/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2754, "atom1_serNum": 25685, "atom2_serNum": 25704, "donAcc_type": "acceptable", "distance": 2.620, "atom1_id": "///2/1356/O2'", "atom2_id": "///2/1357/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2755, "atom1_serNum": 25770, "atom2_serNum": 26162, "donAcc_type": "acceptable", "distance": 2.220, "atom1_id": "///2/1360/O2'", "atom2_id": "///2/1379/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2756, "atom1_serNum": 25775, "atom2_serNum": 25820, "donAcc_type": "standard", "distance": 3.829, "atom1_id": "///2/1360/N3", "atom2_id": "///2/1362/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2757, "atom1_serNum": 25790, "atom2_serNum": 26199, "donAcc_type": "acceptable", "distance": 3.418, "atom1_id": "///2/1361/O2'", "atom2_id": "///2/1380/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2758, "atom1_serNum": 25800, "atom2_serNum": 25809, "donAcc_type": "standard", "distance": 3.152, "atom1_id": "///2/1361/N2", "atom2_id": "///2/1362/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2759, "atom1_serNum": 25805, "atom2_serNum": 25840, "donAcc_type": "standard", "distance": 3.716, "atom1_id": "///2/1362/OP2", "atom2_id": "///2/1363/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2760, "atom1_serNum": 25813, "atom2_serNum": 25824, "donAcc_type": "acceptable", "distance": 3.086, "atom1_id": "///2/1362/O2'", "atom2_id": "///2/1363/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2761, "atom1_serNum": 25817, "atom2_serNum": 26010, "donAcc_type": "questionable", "distance": 2.900, "atom1_id": "///2/1362/O2", "atom2_id": "///2/1371/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2762, "atom1_serNum": 25833, "atom2_serNum": 25837, "donAcc_type": "acceptable", "distance": 2.810, "atom1_id": "///2/1363/O2'", "atom2_id": "///2/1363/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2763, "atom1_serNum": 25837, "atom2_serNum": 26093, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///2/1363/O2", "atom2_id": "///2/1375/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2764, "atom1_serNum": 25838, "atom2_serNum": 26091, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/1363/N3", "atom2_id": "///2/1375/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2765, "atom1_serNum": 25840, "atom2_serNum": 26090, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///2/1363/N4", "atom2_id": "///2/1375/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2766, "atom1_serNum": 25860, "atom2_serNum": 26093, "donAcc_type": "standard", "distance": 2.600, "atom1_id": "///2/1364/O4", "atom2_id": "///2/1375/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2767, "atom1_serNum": 25880, "atom2_serNum": 26070, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///2/1365/O6", "atom2_id": "///2/1374/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2768, "atom1_serNum": 25881, "atom2_serNum": 26068, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/1365/N1", "atom2_id": "///2/1374/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2769, "atom1_serNum": 25883, "atom2_serNum": 26067, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///2/1365/N2", "atom2_id": "///2/1374/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2770, "atom1_serNum": 25896, "atom2_serNum": 27800, "donAcc_type": "acceptable", "distance": 3.103, "atom1_id": "///2/1366/O2'", "atom2_id": "///2/1465/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2771, "atom1_serNum": 25903, "atom2_serNum": 26050, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///2/1366/O6", "atom2_id": "///2/1373/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2772, "atom1_serNum": 25904, "atom2_serNum": 26048, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///2/1366/N1", "atom2_id": "///2/1373/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2773, "atom1_serNum": 25906, "atom2_serNum": 26047, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///2/1366/N2", "atom2_id": "///2/1373/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2774, "atom1_serNum": 25906, "atom2_serNum": 27802, "donAcc_type": "standard", "distance": 3.101, "atom1_id": "///2/1366/N2", "atom2_id": "///2/1465/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2775, "atom1_serNum": 25919, "atom2_serNum": 27814, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///2/1367/O2'", "atom2_id": "///2/1466/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2776, "atom1_serNum": 25923, "atom2_serNum": 26028, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///2/1367/O2", "atom2_id": "///2/1372/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2777, "atom1_serNum": 25924, "atom2_serNum": 26030, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///2/1367/N3", "atom2_id": "///2/1372/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2778, "atom1_serNum": 25937, "atom2_serNum": 60629, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///2/1368/O3'", "atom2_id": "///S/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2779, "atom1_serNum": 25939, "atom2_serNum": 25985, "donAcc_type": "acceptable", "distance": 3.079, "atom1_id": "///2/1368/O2'", "atom2_id": "///2/1370/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2780, "atom1_serNum": 25944, "atom2_serNum": 25995, "donAcc_type": "standard", "distance": 3.461, "atom1_id": "///2/1368/N3", "atom2_id": "///2/1371/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2781, "atom1_serNum": 25950, "atom2_serNum": 60629, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///2/1369/OP1", "atom2_id": "///S/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2782, "atom1_serNum": 25963, "atom2_serNum": 60629, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///2/1369/N7", "atom2_id": "///S/2/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2783, "atom1_serNum": 25981, "atom2_serNum": 26014, "donAcc_type": "acceptable", "distance": 2.854, "atom1_id": "///2/1370/O2'", "atom2_id": "///2/1372/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2784, "atom1_serNum": 25988, "atom2_serNum": 60647, "donAcc_type": "standard", "distance": 3.976, "atom1_id": "///2/1370/N6", "atom2_id": "///S/4/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2785, "atom1_serNum": 25991, "atom2_serNum": 26322, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///2/1370/N3", "atom2_id": "///2/1386/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2786, "atom1_serNum": 26014, "atom2_serNum": 26309, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///2/1372/OP1", "atom2_id": "///2/1385/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2787, "atom1_serNum": 26015, "atom2_serNum": 26307, "donAcc_type": "standard", "distance": 2.600, "atom1_id": "///2/1372/OP2", "atom2_id": "///2/1385/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2788, "atom1_serNum": 26015, "atom2_serNum": 26309, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///2/1372/OP2", "atom2_id": "///2/1385/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2789, "atom1_serNum": 26023, "atom2_serNum": 60654, "donAcc_type": "acceptable", "distance": 2.589, "atom1_id": "///2/1372/O2'", "atom2_id": "///S/5/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2790, "atom1_serNum": 26043, "atom2_serNum": 27792, "donAcc_type": "acceptable", "distance": 2.885, "atom1_id": "///2/1373/O2'", "atom2_id": "///2/1465/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2791, "atom1_serNum": 26047, "atom2_serNum": 27792, "donAcc_type": "acceptable", "distance": 2.433, "atom1_id": "///2/1373/O2", "atom2_id": "///2/1465/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2792, "atom1_serNum": 26054, "atom2_serNum": 60730, "donAcc_type": "standard", "distance": 3.851, "atom1_id": "///2/1374/OP1", "atom2_id": "///S/14/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2793, "atom1_serNum": 26059, "atom2_serNum": 27792, "donAcc_type": "acceptable", "distance": 3.393, "atom1_id": "///2/1374/O4'", "atom2_id": "///2/1465/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2794, "atom1_serNum": 26063, "atom2_serNum": 27772, "donAcc_type": "acceptable", "distance": 2.803, "atom1_id": "///2/1374/O2'", "atom2_id": "///2/1464/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2795, "atom1_serNum": 26063, "atom2_serNum": 27776, "donAcc_type": "acceptable", "distance": 2.608, "atom1_id": "///2/1374/O2'", "atom2_id": "///2/1464/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2796, "atom1_serNum": 26106, "atom2_serNum": 26119, "donAcc_type": "acceptable", "distance": 3.182, "atom1_id": "///2/1376/O2'", "atom2_id": "///2/1377/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2797, "atom1_serNum": 26128, "atom2_serNum": 26161, "donAcc_type": "acceptable", "distance": 2.935, "atom1_id": "///2/1377/O2'", "atom2_id": "///2/1379/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2798, "atom1_serNum": 26135, "atom2_serNum": 26183, "donAcc_type": "questionable", "distance": 3.195, "atom1_id": "///2/1377/O4", "atom2_id": "///2/1380/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2799, "atom1_serNum": 26141, "atom2_serNum": 37243, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///2/1378/O5'", "atom2_id": "///B/132/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2800, "atom1_serNum": 26144, "atom2_serNum": 37243, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///2/1378/O4'", "atom2_id": "///B/132/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2801, "atom1_serNum": 26170, "atom2_serNum": 26188, "donAcc_type": "acceptable", "distance": 3.060, "atom1_id": "///2/1379/O2'", "atom2_id": "///2/1380/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2802, "atom1_serNum": 26279, "atom2_serNum": 28199, "donAcc_type": "acceptable", "distance": 3.376, "atom1_id": "///2/1384/O2'", "atom2_id": "///2/1484/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2803, "atom1_serNum": 26290, "atom2_serNum": 42612, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///2/1385/OP1", "atom2_id": "///E/159/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2804, "atom1_serNum": 26290, "atom2_serNum": 42622, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///2/1385/OP1", "atom2_id": "///E/160/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2805, "atom1_serNum": 26297, "atom2_serNum": 28177, "donAcc_type": "acceptable", "distance": 2.690, "atom1_id": "///2/1385/O3'", "atom2_id": "///2/1483/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2806, "atom1_serNum": 26313, "atom2_serNum": 28177, "donAcc_type": "acceptable", "distance": 2.502, "atom1_id": "///2/1386/OP1", "atom2_id": "///2/1483/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2807, "atom1_serNum": 26314, "atom2_serNum": 42627, "donAcc_type": "acceptable", "distance": 2.465, "atom1_id": "///2/1386/OP2", "atom2_id": "///E/160/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2808, "atom1_serNum": 26352, "atom2_serNum": 42985, "donAcc_type": "standard", "distance": 2.568, "atom1_id": "///2/1387/N1", "atom2_id": "///E/206/OD2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2809, "atom1_serNum": 26359, "atom2_serNum": 26396, "donAcc_type": "standard", "distance": 3.272, "atom1_id": "///2/1388/OP2", "atom2_id": "///2/1389/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2810, "atom1_serNum": 26367, "atom2_serNum": 42984, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///2/1388/O2'", "atom2_id": "///E/206/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2811, "atom1_serNum": 26380, "atom2_serNum": 60970, "donAcc_type": "acceptable", "distance": 2.862, "atom1_id": "///2/1389/OP1", "atom2_id": "///S/43/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2812, "atom1_serNum": 26393, "atom2_serNum": 28144, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///2/1389/O2", "atom2_id": "///2/1481/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2813, "atom1_serNum": 26394, "atom2_serNum": 28142, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///2/1389/N3", "atom2_id": "///2/1481/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2814, "atom1_serNum": 26396, "atom2_serNum": 28141, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/1389/N4", "atom2_id": "///2/1481/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2815, "atom1_serNum": 26414, "atom2_serNum": 28120, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///2/1390/N3", "atom2_id": "///2/1480/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2816, "atom1_serNum": 26416, "atom2_serNum": 28119, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/1390/O4", "atom2_id": "///2/1480/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2817, "atom1_serNum": 26429, "atom2_serNum": 64518, "donAcc_type": "acceptable", "distance": 2.593, "atom1_id": "///2/1391/O2'", "atom2_id": "///V/83/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2818, "atom1_serNum": 26433, "atom2_serNum": 28099, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///2/1391/O2", "atom2_id": "///2/1479/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2819, "atom1_serNum": 26434, "atom2_serNum": 28097, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1391/N3", "atom2_id": "///2/1479/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2820, "atom1_serNum": 26436, "atom2_serNum": 28096, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/1391/N4", "atom2_id": "///2/1479/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2821, "atom1_serNum": 26449, "atom2_serNum": 26465, "donAcc_type": "acceptable", "distance": 3.149, "atom1_id": "///2/1392/O2'", "atom2_id": "///2/1393/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2822, "atom1_serNum": 26502, "atom2_serNum": 28004, "donAcc_type": "acceptable", "distance": 3.913, "atom1_id": "///2/1394/N2", "atom2_id": "///2/1475/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2823, "atom1_serNum": 26519, "atom2_serNum": 27478, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///2/1395/O2", "atom2_id": "///2/1450/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2824, "atom1_serNum": 26520, "atom2_serNum": 27476, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/1395/N3", "atom2_id": "///2/1450/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2825, "atom1_serNum": 26522, "atom2_serNum": 27475, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///2/1395/N4", "atom2_id": "///2/1450/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2826, "atom1_serNum": 26542, "atom2_serNum": 27452, "donAcc_type": "standard", "distance": 2.346, "atom1_id": "///2/1396/N6", "atom2_id": "///2/1449/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2827, "atom1_serNum": 26562, "atom2_serNum": 59544, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/1397/N3", "atom2_id": "///R/11/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2828, "atom1_serNum": 26564, "atom2_serNum": 59557, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///2/1397/O4", "atom2_id": "///R/13/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2829, "atom1_serNum": 26584, "atom2_serNum": 27430, "donAcc_type": "standard", "distance": 3.370, "atom1_id": "///2/1398/O6", "atom2_id": "///2/1448/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2830, "atom1_serNum": 26585, "atom2_serNum": 27431, "donAcc_type": "standard", "distance": 3.190, "atom1_id": "///2/1398/N1", "atom2_id": "///2/1448/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2831, "atom1_serNum": 26591, "atom2_serNum": 73335, "donAcc_type": "standard", "distance": 3.830, "atom1_id": "///2/1399/OP1", "atom2_id": "///h/88/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2832, "atom1_serNum": 26598, "atom2_serNum": 73434, "donAcc_type": "standard", "distance": 2.487, "atom1_id": "///2/1399/O3'", "atom2_id": "///h/100/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2833, "atom1_serNum": 26604, "atom2_serNum": 27410, "donAcc_type": "standard", "distance": 3.231, "atom1_id": "///2/1399/O2", "atom2_id": "///2/1447/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2834, "atom1_serNum": 26605, "atom2_serNum": 27408, "donAcc_type": "standard", "distance": 3.446, "atom1_id": "///2/1399/N3", "atom2_id": "///2/1447/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2835, "atom1_serNum": 26607, "atom2_serNum": 27407, "donAcc_type": "standard", "distance": 3.509, "atom1_id": "///2/1399/N4", "atom2_id": "///2/1447/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2836, "atom1_serNum": 26611, "atom2_serNum": 73434, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///2/1400/OP1", "atom2_id": "///h/100/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2837, "atom1_serNum": 26611, "atom2_serNum": 73435, "donAcc_type": "standard", "distance": 2.521, "atom1_id": "///2/1400/OP1", "atom2_id": "///h/100/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2838, "atom1_serNum": 26627, "atom2_serNum": 27408, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///2/1400/O4", "atom2_id": "///2/1447/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2839, "atom1_serNum": 26669, "atom2_serNum": 27278, "donAcc_type": "acceptable", "distance": 3.202, "atom1_id": "///2/1402/N6", "atom2_id": "///2/1441/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2840, "atom1_serNum": 26669, "atom2_serNum": 27345, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///2/1402/N6", "atom2_id": "///2/1444/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2841, "atom1_serNum": 26670, "atom2_serNum": 27343, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///2/1402/N1", "atom2_id": "///2/1444/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2842, "atom1_serNum": 26676, "atom2_serNum": 26731, "donAcc_type": "standard", "distance": 2.338, "atom1_id": "///2/1403/OP2", "atom2_id": "///2/1405/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2843, "atom1_serNum": 26684, "atom2_serNum": 26696, "donAcc_type": "acceptable", "distance": 2.979, "atom1_id": "///2/1403/O2'", "atom2_id": "///2/1404/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2844, "atom1_serNum": 26700, "atom2_serNum": 30262, "donAcc_type": "questionable", "distance": 3.327, "atom1_id": "///2/1404/O4'", "atom2_id": "///2/1581/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2845, "atom1_serNum": 26702, "atom2_serNum": 30244, "donAcc_type": "acceptable", "distance": 3.313, "atom1_id": "///2/1404/O3'", "atom2_id": "///2/1580/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2846, "atom1_serNum": 26709, "atom2_serNum": 30235, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///2/1404/N3", "atom2_id": "///2/1580/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2847, "atom1_serNum": 26731, "atom2_serNum": 27285, "donAcc_type": "standard", "distance": 3.047, "atom1_id": "///2/1405/N6", "atom2_id": "///2/1441/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2848, "atom1_serNum": 26732, "atom2_serNum": 27283, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///2/1405/N1", "atom2_id": "///2/1441/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2849, "atom1_serNum": 26734, "atom2_serNum": 27342, "donAcc_type": "questionable", "distance": 3.017, "atom1_id": "///2/1405/N3", "atom2_id": "///2/1444/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2850, "atom1_serNum": 26753, "atom2_serNum": 27265, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///2/1406/O6", "atom2_id": "///2/1440/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2851, "atom1_serNum": 26754, "atom2_serNum": 27263, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/1406/N1", "atom2_id": "///2/1440/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2852, "atom1_serNum": 26756, "atom2_serNum": 27262, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///2/1406/N2", "atom2_id": "///2/1440/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2853, "atom1_serNum": 26756, "atom2_serNum": 27305, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///2/1406/N2", "atom2_id": "///2/1442/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2854, "atom1_serNum": 26757, "atom2_serNum": 27325, "donAcc_type": "standard", "distance": 3.458, "atom1_id": "///2/1406/N3", "atom2_id": "///2/1443/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2855, "atom1_serNum": 26769, "atom2_serNum": 59549, "donAcc_type": "acceptable", "distance": 3.221, "atom1_id": "///2/1407/O2'", "atom2_id": "///R/11/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2856, "atom1_serNum": 26774, "atom2_serNum": 27244, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1407/N3", "atom2_id": "///2/1439/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2857, "atom1_serNum": 26776, "atom2_serNum": 27243, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///2/1407/O4", "atom2_id": "///2/1439/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2858, "atom1_serNum": 26787, "atom2_serNum": 59646, "donAcc_type": "standard", "distance": 3.233, "atom1_id": "///2/1408/O3'", "atom2_id": "///R/24/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2859, "atom1_serNum": 26794, "atom2_serNum": 27222, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///2/1408/N3", "atom2_id": "///2/1438/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2860, "atom1_serNum": 26796, "atom2_serNum": 27221, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///2/1408/O4", "atom2_id": "///2/1438/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2861, "atom1_serNum": 26816, "atom2_serNum": 27201, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///2/1409/N6", "atom2_id": "///2/1432/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2862, "atom1_serNum": 26817, "atom2_serNum": 27199, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///2/1409/N1", "atom2_id": "///2/1432/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2863, "atom1_serNum": 26835, "atom2_serNum": 27181, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///2/1410/O2", "atom2_id": "///2/1431/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2864, "atom1_serNum": 26836, "atom2_serNum": 27179, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///2/1410/N3", "atom2_id": "///2/1431/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2865, "atom1_serNum": 26838, "atom2_serNum": 27178, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///2/1410/N4", "atom2_id": "///2/1431/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2866, "atom1_serNum": 26858, "atom2_serNum": 27158, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///2/1411/O6", "atom2_id": "///2/1430/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2867, "atom1_serNum": 26859, "atom2_serNum": 27156, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/1411/N1", "atom2_id": "///2/1430/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2868, "atom1_serNum": 26861, "atom2_serNum": 27155, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///2/1411/N2", "atom2_id": "///2/1430/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2869, "atom1_serNum": 26878, "atom2_serNum": 27138, "donAcc_type": "standard", "distance": 2.720, "atom1_id": "///2/1412/O2", "atom2_id": "///2/1429/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2870, "atom1_serNum": 26879, "atom2_serNum": 27136, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///2/1412/N3", "atom2_id": "///2/1429/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2871, "atom1_serNum": 26881, "atom2_serNum": 27135, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///2/1412/N4", "atom2_id": "///2/1429/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2872, "atom1_serNum": 26901, "atom2_serNum": 27092, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///2/1413/O6", "atom2_id": "///2/1427/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2873, "atom1_serNum": 26902, "atom2_serNum": 27090, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/1413/N1", "atom2_id": "///2/1427/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2874, "atom1_serNum": 26904, "atom2_serNum": 27089, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///2/1413/N2", "atom2_id": "///2/1427/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2875, "atom1_serNum": 26917, "atom2_serNum": 63872, "donAcc_type": "acceptable", "distance": 2.592, "atom1_id": "///2/1414/O2'", "atom2_id": "///U/128/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2876, "atom1_serNum": 26924, "atom2_serNum": 27072, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///2/1414/N6", "atom2_id": "///2/1426/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2877, "atom1_serNum": 26925, "atom2_serNum": 27070, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///2/1414/N1", "atom2_id": "///2/1426/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2878, "atom1_serNum": 26927, "atom2_serNum": 63873, "donAcc_type": "standard", "distance": 3.354, "atom1_id": "///2/1414/N3", "atom2_id": "///U/128/NE2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2879, "atom1_serNum": 26930, "atom2_serNum": 63884, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///2/1415/OP1", "atom2_id": "///U/129/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2880, "atom1_serNum": 26937, "atom2_serNum": 63883, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///2/1415/O3'", "atom2_id": "///U/129/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2881, "atom1_serNum": 26939, "atom2_serNum": 26955, "donAcc_type": "acceptable", "distance": 3.163, "atom1_id": "///2/1415/O2'", "atom2_id": "///2/1416/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2882, "atom1_serNum": 26943, "atom2_serNum": 27052, "donAcc_type": "standard", "distance": 3.091, "atom1_id": "///2/1415/O2", "atom2_id": "///2/1425/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2883, "atom1_serNum": 26944, "atom2_serNum": 27050, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///2/1415/N3", "atom2_id": "///2/1425/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2884, "atom1_serNum": 26946, "atom2_serNum": 27049, "donAcc_type": "standard", "distance": 3.375, "atom1_id": "///2/1415/N4", "atom2_id": "///2/1425/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2885, "atom1_serNum": 26950, "atom2_serNum": 63883, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///2/1416/OP1", "atom2_id": "///U/129/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2886, "atom1_serNum": 26963, "atom2_serNum": 27029, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///2/1416/O2", "atom2_id": "///2/1424/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2887, "atom1_serNum": 26964, "atom2_serNum": 27027, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///2/1416/N3", "atom2_id": "///2/1424/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2888, "atom1_serNum": 26966, "atom2_serNum": 27026, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///2/1416/N4", "atom2_id": "///2/1424/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2889, "atom1_serNum": 27058, "atom2_serNum": 60005, "donAcc_type": "standard", "distance": 2.665, "atom1_id": "///2/1426/O5'", "atom2_id": "///R/69/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2890, "atom1_serNum": 27065, "atom2_serNum": 62922, "donAcc_type": "acceptable", "distance": 3.657, "atom1_id": "///2/1426/O2'", "atom2_id": "///U/7/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2891, "atom1_serNum": 27077, "atom2_serNum": 60004, "donAcc_type": "standard", "distance": 3.357, "atom1_id": "///2/1427/OP2", "atom2_id": "///R/69/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2892, "atom1_serNum": 27085, "atom2_serNum": 27119, "donAcc_type": "acceptable", "distance": 2.488, "atom1_id": "///2/1427/O2'", "atom2_id": "///2/1429/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2893, "atom1_serNum": 27105, "atom2_serNum": 63407, "donAcc_type": "acceptable", "distance": 3.742, "atom1_id": "///2/1428/O2'", "atom2_id": "///U/66/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2894, "atom1_serNum": 27112, "atom2_serNum": 60039, "donAcc_type": "standard", "distance": 3.272, "atom1_id": "///2/1428/O6", "atom2_id": "///R/73/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2895, "atom1_serNum": 27113, "atom2_serNum": 30345, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///2/1428/N1", "atom2_id": "///2/1585/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2896, "atom1_serNum": 27201, "atom2_serNum": 27221, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///2/1432/O4", "atom2_id": "///2/1438/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2897, "atom1_serNum": 27214, "atom2_serNum": 27229, "donAcc_type": "acceptable", "distance": 3.033, "atom1_id": "///2/1438/O2'", "atom2_id": "///2/1439/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2898, "atom1_serNum": 27258, "atom2_serNum": 27274, "donAcc_type": "acceptable", "distance": 2.998, "atom1_id": "///2/1440/O2'", "atom2_id": "///2/1441/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2899, "atom1_serNum": 27262, "atom2_serNum": 27305, "donAcc_type": "questionable", "distance": 2.990, "atom1_id": "///2/1440/O2", "atom2_id": "///2/1442/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2900, "atom1_serNum": 27278, "atom2_serNum": 27345, "donAcc_type": "acceptable", "distance": 2.978, "atom1_id": "///2/1441/O2'", "atom2_id": "///2/1444/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2901, "atom1_serNum": 27282, "atom2_serNum": 27325, "donAcc_type": "standard", "distance": 3.773, "atom1_id": "///2/1441/O2", "atom2_id": "///2/1443/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2902, "atom1_serNum": 27316, "atom2_serNum": 59582, "donAcc_type": "standard", "distance": 3.370, "atom1_id": "///2/1443/O3'", "atom2_id": "///R/15/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2903, "atom1_serNum": 27318, "atom2_serNum": 59618, "donAcc_type": "acceptable", "distance": 3.062, "atom1_id": "///2/1443/O2'", "atom2_id": "///R/20/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2904, "atom1_serNum": 27338, "atom2_serNum": 27354, "donAcc_type": "acceptable", "distance": 2.807, "atom1_id": "///2/1444/O2'", "atom2_id": "///2/1445/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2905, "atom1_serNum": 27338, "atom2_serNum": 30252, "donAcc_type": "acceptable", "distance": 3.028, "atom1_id": "///2/1444/O2'", "atom2_id": "///2/1580/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2906, "atom1_serNum": 27358, "atom2_serNum": 64281, "donAcc_type": "acceptable", "distance": 3.379, "atom1_id": "///2/1445/O2'", "atom2_id": "///V/55/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2907, "atom1_serNum": 27362, "atom2_serNum": 30251, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///2/1445/O2", "atom2_id": "///2/1580/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2908, "atom1_serNum": 27369, "atom2_serNum": 64304, "donAcc_type": "standard", "distance": 3.781, "atom1_id": "///2/1446/OP1", "atom2_id": "///V/58/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2909, "atom1_serNum": 27388, "atom2_serNum": 64287, "donAcc_type": "standard", "distance": 3.986, "atom1_id": "///2/1446/N3", "atom2_id": "///V/55/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2910, "atom1_serNum": 27393, "atom2_serNum": 64556, "donAcc_type": "standard", "distance": 2.457, "atom1_id": "///2/1447/O5'", "atom2_id": "///V/87/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2911, "atom1_serNum": 27396, "atom2_serNum": 64556, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///2/1447/O4'", "atom2_id": "///V/87/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2912, "atom1_serNum": 27400, "atom2_serNum": 27419, "donAcc_type": "acceptable", "distance": 2.890, "atom1_id": "///2/1447/O2'", "atom2_id": "///2/1448/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2913, "atom1_serNum": 27466, "atom2_serNum": 60897, "donAcc_type": "standard", "distance": 3.095, "atom1_id": "///2/1450/O3'", "atom2_id": "///S/33/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2914, "atom1_serNum": 27482, "atom2_serNum": 60886, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///2/1451/OP1", "atom2_id": "///S/32/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2915, "atom1_serNum": 27482, "atom2_serNum": 60896, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///2/1451/OP1", "atom2_id": "///S/33/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2916, "atom1_serNum": 27482, "atom2_serNum": 60897, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///2/1451/OP1", "atom2_id": "///S/33/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2917, "atom1_serNum": 27483, "atom2_serNum": 60979, "donAcc_type": "standard", "distance": 3.254, "atom1_id": "///2/1451/OP2", "atom2_id": "///S/44/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2918, "atom1_serNum": 27483, "atom2_serNum": 61007, "donAcc_type": "standard", "distance": 3.409, "atom1_id": "///2/1451/OP2", "atom2_id": "///S/47/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2919, "atom1_serNum": 27491, "atom2_serNum": 28011, "donAcc_type": "acceptable", "distance": 3.904, "atom1_id": "///2/1451/O2'", "atom2_id": "///2/1475/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2920, "atom1_serNum": 27501, "atom2_serNum": 27990, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///2/1451/N2", "atom2_id": "///2/1474/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2921, "atom1_serNum": 27501, "atom2_serNum": 28008, "donAcc_type": "standard", "distance": 3.864, "atom1_id": "///2/1451/N2", "atom2_id": "///2/1475/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2922, "atom1_serNum": 27502, "atom2_serNum": 27989, "donAcc_type": "standard", "distance": 3.503, "atom1_id": "///2/1451/N3", "atom2_id": "///2/1474/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2923, "atom1_serNum": 27506, "atom2_serNum": 60886, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///2/1452/OP2", "atom2_id": "///S/32/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2924, "atom1_serNum": 27521, "atom2_serNum": 27959, "donAcc_type": "acceptable", "distance": 2.835, "atom1_id": "///2/1452/N6", "atom2_id": "///2/1473/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2925, "atom1_serNum": 27521, "atom2_serNum": 27970, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///2/1452/N6", "atom2_id": "///2/1473/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2926, "atom1_serNum": 27522, "atom2_serNum": 27969, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///2/1452/N1", "atom2_id": "///2/1473/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2927, "atom1_serNum": 27527, "atom2_serNum": 60988, "donAcc_type": "standard", "distance": 2.595, "atom1_id": "///2/1453/OP1", "atom2_id": "///S/45/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2928, "atom1_serNum": 27527, "atom2_serNum": 61015, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///2/1453/OP1", "atom2_id": "///S/48/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2929, "atom1_serNum": 27534, "atom2_serNum": 61024, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///2/1453/O3'", "atom2_id": "///S/49/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2930, "atom1_serNum": 27536, "atom2_serNum": 27569, "donAcc_type": "acceptable", "distance": 2.791, "atom1_id": "///2/1453/O2'", "atom2_id": "///2/1455/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2931, "atom1_serNum": 27543, "atom2_serNum": 28035, "donAcc_type": "standard", "distance": 3.615, "atom1_id": "///2/1453/N4", "atom2_id": "///2/1476/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2932, "atom1_serNum": 27547, "atom2_serNum": 61024, "donAcc_type": "standard", "distance": 2.401, "atom1_id": "///2/1454/OP1", "atom2_id": "///S/49/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2933, "atom1_serNum": 27548, "atom2_serNum": 60643, "donAcc_type": "standard", "distance": 2.558, "atom1_id": "///2/1454/OP2", "atom2_id": "///S/3/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2934, "atom1_serNum": 27563, "atom2_serNum": 27849, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///2/1454/N6", "atom2_id": "///2/1468/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2935, "atom1_serNum": 27564, "atom2_serNum": 28027, "donAcc_type": "acceptable", "distance": 2.936, "atom1_id": "///2/1454/N1", "atom2_id": "///2/1476/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2936, "atom1_serNum": 27569, "atom2_serNum": 60661, "donAcc_type": "standard", "distance": 3.648, "atom1_id": "///2/1455/OP1", "atom2_id": "///S/5/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2937, "atom1_serNum": 27586, "atom2_serNum": 27926, "donAcc_type": "standard", "distance": 3.894, "atom1_id": "///2/1455/N1", "atom2_id": "///2/1471/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2938, "atom1_serNum": 27591, "atom2_serNum": 61102, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///2/1456/OP1", "atom2_id": "///S/59/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2939, "atom1_serNum": 27607, "atom2_serNum": 27906, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///2/1456/O6", "atom2_id": "///2/1470/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2940, "atom1_serNum": 27608, "atom2_serNum": 27904, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///2/1456/N1", "atom2_id": "///2/1470/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2941, "atom1_serNum": 27610, "atom2_serNum": 27903, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///2/1456/N2", "atom2_id": "///2/1470/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2942, "atom1_serNum": 27628, "atom2_serNum": 27885, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1457/N3", "atom2_id": "///2/1469/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2943, "atom1_serNum": 27630, "atom2_serNum": 27884, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/1457/O4", "atom2_id": "///2/1469/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2944, "atom1_serNum": 27634, "atom2_serNum": 74814, "donAcc_type": "questionable", "distance": 2.878, "atom1_id": "///2/1458/OP1", "atom2_id": "///h/279/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2945, "atom1_serNum": 27634, "atom2_serNum": 74816, "donAcc_type": "acceptable", "distance": 3.189, "atom1_id": "///2/1458/OP1", "atom2_id": "///h/279/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2946, "atom1_serNum": 27650, "atom2_serNum": 27864, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///2/1458/O6", "atom2_id": "///2/1468/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2947, "atom1_serNum": 27651, "atom2_serNum": 27862, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/1458/N1", "atom2_id": "///2/1468/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2948, "atom1_serNum": 27653, "atom2_serNum": 27861, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///2/1458/N2", "atom2_id": "///2/1468/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2949, "atom1_serNum": 27673, "atom2_serNum": 27844, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///2/1459/O6", "atom2_id": "///2/1467/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2950, "atom1_serNum": 27674, "atom2_serNum": 27842, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///2/1459/N1", "atom2_id": "///2/1467/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2951, "atom1_serNum": 27676, "atom2_serNum": 27841, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///2/1459/N2", "atom2_id": "///2/1467/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2952, "atom1_serNum": 27693, "atom2_serNum": 27824, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///2/1460/O2", "atom2_id": "///2/1466/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2953, "atom1_serNum": 27694, "atom2_serNum": 27822, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///2/1460/N3", "atom2_id": "///2/1466/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2954, "atom1_serNum": 27696, "atom2_serNum": 27821, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///2/1460/N4", "atom2_id": "///2/1466/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2955, "atom1_serNum": 27709, "atom2_serNum": 27779, "donAcc_type": "acceptable", "distance": 2.845, "atom1_id": "///2/1461/O2'", "atom2_id": "///2/1464/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2956, "atom1_serNum": 27719, "atom2_serNum": 27784, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///2/1461/N2", "atom2_id": "///2/1465/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2957, "atom1_serNum": 27719, "atom2_serNum": 27796, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///2/1461/N2", "atom2_id": "///2/1465/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2958, "atom1_serNum": 27720, "atom2_serNum": 27799, "donAcc_type": "standard", "distance": 3.405, "atom1_id": "///2/1461/N3", "atom2_id": "///2/1465/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2959, "atom1_serNum": 27725, "atom2_serNum": 27779, "donAcc_type": "standard", "distance": 3.462, "atom1_id": "///2/1462/O5'", "atom2_id": "///2/1464/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2960, "atom1_serNum": 27732, "atom2_serNum": 27743, "donAcc_type": "acceptable", "distance": 2.690, "atom1_id": "///2/1462/O2'", "atom2_id": "///2/1463/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2961, "atom1_serNum": 27732, "atom2_serNum": 61169, "donAcc_type": "acceptable", "distance": 3.184, "atom1_id": "///2/1462/O2'", "atom2_id": "///S/67/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2962, "atom1_serNum": 27732, "atom2_serNum": 61170, "donAcc_type": "acceptable", "distance": 2.330, "atom1_id": "///2/1462/O2'", "atom2_id": "///S/67/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2963, "atom1_serNum": 27743, "atom2_serNum": 61170, "donAcc_type": "standard", "distance": 2.408, "atom1_id": "///2/1463/OP1", "atom2_id": "///S/67/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2964, "atom1_serNum": 27768, "atom2_serNum": 61169, "donAcc_type": "standard", "distance": 3.547, "atom1_id": "///2/1464/O4'", "atom2_id": "///S/67/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2965, "atom1_serNum": 27783, "atom2_serNum": 61077, "donAcc_type": "standard", "distance": 2.690, "atom1_id": "///2/1465/OP1", "atom2_id": "///S/56/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2966, "atom1_serNum": 27805, "atom2_serNum": 60651, "donAcc_type": "standard", "distance": 3.685, "atom1_id": "///2/1466/OP1", "atom2_id": "///S/5/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2967, "atom1_serNum": 27806, "atom2_serNum": 60660, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///2/1466/OP2", "atom2_id": "///S/5/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2968, "atom1_serNum": 27828, "atom2_serNum": 60633, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///2/1467/OP1", "atom2_id": "///S/3/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2969, "atom1_serNum": 27837, "atom2_serNum": 27853, "donAcc_type": "acceptable", "distance": 3.282, "atom1_id": "///2/1467/O2'", "atom2_id": "///2/1468/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2970, "atom1_serNum": 27890, "atom2_serNum": 45604, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///2/1470/OP1", "atom2_id": "///G/59/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2971, "atom1_serNum": 27891, "atom2_serNum": 45604, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///2/1470/OP2", "atom2_id": "///G/59/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2972, "atom1_serNum": 27937, "atom2_serNum": 72761, "donAcc_type": "standard", "distance": 3.268, "atom1_id": "///2/1472/O3'", "atom2_id": "///h/15/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2973, "atom1_serNum": 27939, "atom2_serNum": 72760, "donAcc_type": "acceptable", "distance": 2.291, "atom1_id": "///2/1472/O2'", "atom2_id": "///h/15/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2974, "atom1_serNum": 27944, "atom2_serNum": 28034, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///2/1472/N3", "atom2_id": "///2/1476/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2975, "atom1_serNum": 27946, "atom2_serNum": 28031, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///2/1472/N4", "atom2_id": "///2/1476/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2976, "atom1_serNum": 27950, "atom2_serNum": 72761, "donAcc_type": "standard", "distance": 3.228, "atom1_id": "///2/1473/OP1", "atom2_id": "///h/15/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2977, "atom1_serNum": 27952, "atom2_serNum": 72761, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///2/1473/O5'", "atom2_id": "///h/15/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2978, "atom1_serNum": 27959, "atom2_serNum": 28012, "donAcc_type": "acceptable", "distance": 3.551, "atom1_id": "///2/1473/O2'", "atom2_id": "///2/1475/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2979, "atom1_serNum": 27969, "atom2_serNum": 28019, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///2/1473/N2", "atom2_id": "///2/1476/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2980, "atom1_serNum": 27970, "atom2_serNum": 28014, "donAcc_type": "standard", "distance": 2.634, "atom1_id": "///2/1473/N3", "atom2_id": "///2/1475/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2981, "atom1_serNum": 27982, "atom2_serNum": 28000, "donAcc_type": "acceptable", "distance": 2.394, "atom1_id": "///2/1474/O2'", "atom2_id": "///2/1475/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2982, "atom1_serNum": 27996, "atom2_serNum": 28014, "donAcc_type": "standard", "distance": 2.351, "atom1_id": "///2/1475/OP2", "atom2_id": "///2/1475/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2983, "atom1_serNum": 28069, "atom2_serNum": 28085, "donAcc_type": "acceptable", "distance": 2.996, "atom1_id": "///2/1478/O2'", "atom2_id": "///2/1479/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2984, "atom1_serNum": 28089, "atom2_serNum": 60505, "donAcc_type": "acceptable", "distance": 3.097, "atom1_id": "///2/1479/O2'", "atom2_id": "///R/131/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2985, "atom1_serNum": 28099, "atom2_serNum": 71635, "donAcc_type": "standard", "distance": 3.349, "atom1_id": "///2/1479/N2", "atom2_id": "///e/56/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2986, "atom1_serNum": 28112, "atom2_serNum": 64478, "donAcc_type": "acceptable", "distance": 3.706, "atom1_id": "///2/1480/O2'", "atom2_id": "///V/79/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2987, "atom1_serNum": 28112, "atom2_serNum": 71632, "donAcc_type": "acceptable", "distance": 2.503, "atom1_id": "///2/1480/O2'", "atom2_id": "///e/56/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2988, "atom1_serNum": 28157, "atom2_serNum": 42615, "donAcc_type": "acceptable", "distance": 3.937, "atom1_id": "///2/1482/O2'", "atom2_id": "///E/159/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2989, "atom1_serNum": 28157, "atom2_serNum": 42628, "donAcc_type": "acceptable", "distance": 3.126, "atom1_id": "///2/1482/O2'", "atom2_id": "///E/161/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2990, "atom1_serNum": 28161, "atom2_serNum": 42628, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///2/1482/O2", "atom2_id": "///E/161/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2991, "atom1_serNum": 28212, "atom2_serNum": 42621, "donAcc_type": "standard", "distance": 3.373, "atom1_id": "///2/1485/OP1", "atom2_id": "///E/159/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2992, "atom1_serNum": 28232, "atom2_serNum": 42557, "donAcc_type": "standard", "distance": 3.162, "atom1_id": "///2/1486/OP1", "atom2_id": "///E/151/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2993, "atom1_serNum": 28241, "atom2_serNum": 28259, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///2/1486/O2'", "atom2_id": "///2/1487/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2994, "atom1_serNum": 28254, "atom2_serNum": 42534, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///2/1487/OP1", "atom2_id": "///E/148/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2995, "atom1_serNum": 28285, "atom2_serNum": 28319, "donAcc_type": "acceptable", "distance": 2.416, "atom1_id": "///2/1488/O2'", "atom2_id": "///2/1490/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2996, "atom1_serNum": 28285, "atom2_serNum": 28320, "donAcc_type": "acceptable", "distance": 3.058, "atom1_id": "///2/1488/O2'", "atom2_id": "///2/1490/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2997, "atom1_serNum": 28346, "atom2_serNum": 64420, "donAcc_type": "questionable", "distance": 3.303, "atom1_id": "///2/1491/O4'", "atom2_id": "///V/72/OE2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2998, "atom1_serNum": 28371, "atom2_serNum": 28424, "donAcc_type": "questionable", "distance": 3.139, "atom1_id": "///2/1492/O3'", "atom2_id": "///2/1495/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2999, "atom1_serNum": 28373, "atom2_serNum": 28425, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///2/1492/O2'", "atom2_id": "///2/1495/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3000, "atom1_serNum": 28384, "atom2_serNum": 28413, "donAcc_type": "acceptable", "distance": 2.664, "atom1_id": "///2/1493/OP1", "atom2_id": "///2/1494/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3001, "atom1_serNum": 28397, "atom2_serNum": 28525, "donAcc_type": "questionable", "distance": 3.199, "atom1_id": "///2/1493/O2", "atom2_id": "///2/1499/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3002, "atom1_serNum": 28433, "atom2_serNum": 71381, "donAcc_type": "acceptable", "distance": 2.257, "atom1_id": "///2/1495/O2'", "atom2_id": "///e/26/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3003, "atom1_serNum": 28443, "atom2_serNum": 71545, "donAcc_type": "standard", "distance": 3.366, "atom1_id": "///2/1495/N2", "atom2_id": "///e/45/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3004, "atom1_serNum": 28456, "atom2_serNum": 28490, "donAcc_type": "acceptable", "distance": 3.505, "atom1_id": "///2/1496/O2'", "atom2_id": "///2/1498/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3005, "atom1_serNum": 28468, "atom2_serNum": 28528, "donAcc_type": "questionable", "distance": 3.267, "atom1_id": "///2/1497/OP2", "atom2_id": "///2/1499/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3006, "atom1_serNum": 28541, "atom2_serNum": 42778, "donAcc_type": "acceptable", "distance": 2.814, "atom1_id": "///2/1500/O2'", "atom2_id": "///E/179/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3007, "atom1_serNum": 28604, "atom2_serNum": 28738, "donAcc_type": "acceptable", "distance": 2.983, "atom1_id": "///2/1503/O2'", "atom2_id": "///2/1509/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3008, "atom1_serNum": 28624, "atom2_serNum": 28640, "donAcc_type": "acceptable", "distance": 3.273, "atom1_id": "///2/1504/O2'", "atom2_id": "///2/1505/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3009, "atom1_serNum": 28678, "atom2_serNum": 72153, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///2/1507/OP2", "atom2_id": "///g/89/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3010, "atom1_serNum": 28679, "atom2_serNum": 72153, "donAcc_type": "standard", "distance": 2.703, "atom1_id": "///2/1507/O5'", "atom2_id": "///g/89/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3011, "atom1_serNum": 28686, "atom2_serNum": 72100, "donAcc_type": "acceptable", "distance": 2.583, "atom1_id": "///2/1507/O2'", "atom2_id": "///g/83/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3012, "atom1_serNum": 28696, "atom2_serNum": 72134, "donAcc_type": "standard", "distance": 2.212, "atom1_id": "///2/1507/N2", "atom2_id": "///g/87/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3013, "atom1_serNum": 28709, "atom2_serNum": 28755, "donAcc_type": "acceptable", "distance": 2.647, "atom1_id": "///2/1508/O2'", "atom2_id": "///2/1510/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3014, "atom1_serNum": 28723, "atom2_serNum": 72123, "donAcc_type": "acceptable", "distance": 3.328, "atom1_id": "///2/1509/OP2", "atom2_id": "///g/85/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3015, "atom1_serNum": 28805, "atom2_serNum": 71251, "donAcc_type": "standard", "distance": 3.849, "atom1_id": "///2/1513/OP1", "atom2_id": "///e/10/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3016, "atom1_serNum": 28814, "atom2_serNum": 28830, "donAcc_type": "acceptable", "distance": 3.323, "atom1_id": "///2/1513/O2'", "atom2_id": "///2/1514/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3017, "atom1_serNum": 28857, "atom2_serNum": 59119, "donAcc_type": "acceptable", "distance": 3.518, "atom1_id": "///2/1515/O2'", "atom2_id": "///Q/79/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3018, "atom1_serNum": 28857, "atom2_serNum": 59255, "donAcc_type": "acceptable", "distance": 3.845, "atom1_id": "///2/1515/O2'", "atom2_id": "///Q/97/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3019, "atom1_serNum": 28867, "atom2_serNum": 59275, "donAcc_type": "standard", "distance": 2.603, "atom1_id": "///2/1515/N2", "atom2_id": "///Q/99/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3020, "atom1_serNum": 28871, "atom2_serNum": 31128, "donAcc_type": "questionable", "distance": 3.243, "atom1_id": "///2/1516/OP1", "atom2_id": "///2/1621/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3021, "atom1_serNum": 28873, "atom2_serNum": 59144, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///2/1516/O5'", "atom2_id": "///Q/81/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3022, "atom1_serNum": 28894, "atom2_serNum": 31146, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///2/1517/OP1", "atom2_id": "///2/1622/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3023, "atom1_serNum": 28950, "atom2_serNum": 62809, "donAcc_type": "standard", "distance": 3.122, "atom1_id": "///2/1519/O2", "atom2_id": "///T/135/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3024, "atom1_serNum": 28957, "atom2_serNum": 62810, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///2/1520/OP1", "atom2_id": "///T/136/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3025, "atom1_serNum": 28957, "atom2_serNum": 62817, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///2/1520/OP1", "atom2_id": "///T/137/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3026, "atom1_serNum": 28982, "atom2_serNum": 59475, "donAcc_type": "acceptable", "distance": 3.757, "atom1_id": "///2/1521/O5'", "atom2_id": "///Q/123/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3027, "atom1_serNum": 28989, "atom2_serNum": 29023, "donAcc_type": "acceptable", "distance": 3.264, "atom1_id": "///2/1521/O2'", "atom2_id": "///2/1523/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3028, "atom1_serNum": 28993, "atom2_serNum": 29017, "donAcc_type": "questionable", "distance": 3.180, "atom1_id": "///2/1521/O2", "atom2_id": "///2/1522/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3029, "atom1_serNum": 29007, "atom2_serNum": 62873, "donAcc_type": "questionable", "distance": 2.805, "atom1_id": "///2/1522/O3'", "atom2_id": "///T/144/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3030, "atom1_serNum": 29009, "atom2_serNum": 62886, "donAcc_type": "acceptable", "distance": 2.328, "atom1_id": "///2/1522/O2'", "atom2_id": "///T/145/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3031, "atom1_serNum": 29038, "atom2_serNum": 62820, "donAcc_type": "standard", "distance": 3.755, "atom1_id": "///2/1523/N4", "atom2_id": "///T/137/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3032, "atom1_serNum": 29043, "atom2_serNum": 62851, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///2/1524/OP2", "atom2_id": "///T/141/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3033, "atom1_serNum": 29055, "atom2_serNum": 62854, "donAcc_type": "standard", "distance": 3.366, "atom1_id": "///2/1524/N7", "atom2_id": "///T/141/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3034, "atom1_serNum": 29094, "atom2_serNum": 29113, "donAcc_type": "acceptable", "distance": 2.321, "atom1_id": "///2/1526/O2'", "atom2_id": "///2/1527/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3035, "atom1_serNum": 29094, "atom2_serNum": 60603, "donAcc_type": "acceptable", "distance": 2.526, "atom1_id": "///2/1526/O2'", "atom2_id": "///R/144/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3036, "atom1_serNum": 29108, "atom2_serNum": 60587, "donAcc_type": "questionable", "distance": 2.936, "atom1_id": "///2/1527/OP1", "atom2_id": "///R/142/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3037, "atom1_serNum": 29128, "atom2_serNum": 60580, "donAcc_type": "standard", "distance": 3.939, "atom1_id": "///2/1528/OP1", "atom2_id": "///R/142/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3038, "atom1_serNum": 29137, "atom2_serNum": 32071, "donAcc_type": "acceptable", "distance": 2.220, "atom1_id": "///2/1528/O2'", "atom2_id": "///2/1666/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3039, "atom1_serNum": 29160, "atom2_serNum": 63555, "donAcc_type": "acceptable", "distance": 2.607, "atom1_id": "///2/1529/O2'", "atom2_id": "///U/87/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3040, "atom1_serNum": 29164, "atom2_serNum": 32067, "donAcc_type": "standard", "distance": 2.367, "atom1_id": "///2/1529/O2", "atom2_id": "///2/1665/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3041, "atom1_serNum": 29180, "atom2_serNum": 30786, "donAcc_type": "acceptable", "distance": 2.676, "atom1_id": "///2/1530/O2'", "atom2_id": "///2/1606/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3042, "atom1_serNum": 29191, "atom2_serNum": 63539, "donAcc_type": "standard", "distance": 2.357, "atom1_id": "///2/1531/OP1", "atom2_id": "///U/84/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3043, "atom1_serNum": 29198, "atom2_serNum": 30749, "donAcc_type": "acceptable", "distance": 3.451, "atom1_id": "///2/1531/O3'", "atom2_id": "///2/1604/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3044, "atom1_serNum": 29200, "atom2_serNum": 30759, "donAcc_type": "acceptable", "distance": 3.053, "atom1_id": "///2/1531/O2'", "atom2_id": "///2/1604/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3045, "atom1_serNum": 29200, "atom2_serNum": 30768, "donAcc_type": "acceptable", "distance": 3.044, "atom1_id": "///2/1531/O2'", "atom2_id": "///2/1605/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3046, "atom1_serNum": 29218, "atom2_serNum": 30759, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///2/1532/O4'", "atom2_id": "///2/1604/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3047, "atom1_serNum": 29222, "atom2_serNum": 30692, "donAcc_type": "acceptable", "distance": 2.736, "atom1_id": "///2/1532/O2'", "atom2_id": "///2/1601/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3048, "atom1_serNum": 29222, "atom2_serNum": 31428, "donAcc_type": "acceptable", "distance": 3.399, "atom1_id": "///2/1532/O2'", "atom2_id": "///2/1636/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3049, "atom1_serNum": 29226, "atom2_serNum": 31487, "donAcc_type": "standard", "distance": 2.747, "atom1_id": "///2/1532/O2", "atom2_id": "///2/1638/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3050, "atom1_serNum": 29227, "atom2_serNum": 31485, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/1532/N3", "atom2_id": "///2/1638/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3051, "atom1_serNum": 29229, "atom2_serNum": 31484, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///2/1532/N4", "atom2_id": "///2/1638/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3052, "atom1_serNum": 29233, "atom2_serNum": 31459, "donAcc_type": "questionable", "distance": 2.884, "atom1_id": "///2/1533/OP1", "atom2_id": "///2/1637/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3053, "atom1_serNum": 29235, "atom2_serNum": 31462, "donAcc_type": "standard", "distance": 3.422, "atom1_id": "///2/1533/O5'", "atom2_id": "///2/1637/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3054, "atom1_serNum": 29242, "atom2_serNum": 29300, "donAcc_type": "acceptable", "distance": 3.150, "atom1_id": "///2/1533/O2'", "atom2_id": "///2/1536/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3055, "atom1_serNum": 29242, "atom2_serNum": 29304, "donAcc_type": "acceptable", "distance": 3.158, "atom1_id": "///2/1533/O2'", "atom2_id": "///2/1536/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3056, "atom1_serNum": 29246, "atom2_serNum": 30711, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///2/1533/N7", "atom2_id": "///2/1602/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3057, "atom1_serNum": 29249, "atom2_serNum": 30710, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///2/1533/N6", "atom2_id": "///2/1602/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3058, "atom1_serNum": 29256, "atom2_serNum": 46424, "donAcc_type": "standard", "distance": 3.711, "atom1_id": "///2/1534/OP2", "atom2_id": "///G/164/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3059, "atom1_serNum": 29268, "atom2_serNum": 30628, "donAcc_type": "standard", "distance": 2.511, "atom1_id": "///2/1534/O2", "atom2_id": "///2/1598/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3060, "atom1_serNum": 29271, "atom2_serNum": 30668, "donAcc_type": "standard", "distance": 2.552, "atom1_id": "///2/1534/N4", "atom2_id": "///2/1600/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3061, "atom1_serNum": 29275, "atom2_serNum": 46467, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///2/1535/OP1", "atom2_id": "///G/169/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3062, "atom1_serNum": 29276, "atom2_serNum": 46465, "donAcc_type": "acceptable", "distance": 2.884, "atom1_id": "///2/1535/OP2", "atom2_id": "///G/168/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3063, "atom1_serNum": 29284, "atom2_serNum": 29288, "donAcc_type": "acceptable", "distance": 2.589, "atom1_id": "///2/1535/O2'", "atom2_id": "///2/1535/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3064, "atom1_serNum": 29284, "atom2_serNum": 45786, "donAcc_type": "acceptable", "distance": 2.299, "atom1_id": "///2/1535/O2'", "atom2_id": "///G/81/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3065, "atom1_serNum": 29288, "atom2_serNum": 45785, "donAcc_type": "standard", "distance": 3.155, "atom1_id": "///2/1535/O2", "atom2_id": "///G/81/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3066, "atom1_serNum": 29291, "atom2_serNum": 46390, "donAcc_type": "standard", "distance": 3.916, "atom1_id": "///2/1535/O4", "atom2_id": "///G/159/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3067, "atom1_serNum": 29304, "atom2_serNum": 29323, "donAcc_type": "acceptable", "distance": 3.394, "atom1_id": "///2/1536/O2'", "atom2_id": "///2/1537/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3068, "atom1_serNum": 29311, "atom2_serNum": 30605, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///2/1536/O6", "atom2_id": "///2/1597/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3069, "atom1_serNum": 29312, "atom2_serNum": 30603, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1536/N1", "atom2_id": "///2/1597/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3070, "atom1_serNum": 29314, "atom2_serNum": 30602, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///2/1536/N2", "atom2_id": "///2/1597/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3071, "atom1_serNum": 29334, "atom2_serNum": 30585, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///2/1537/N6", "atom2_id": "///2/1596/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3072, "atom1_serNum": 29335, "atom2_serNum": 30583, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/1537/N1", "atom2_id": "///2/1596/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3073, "atom1_serNum": 29354, "atom2_serNum": 30583, "donAcc_type": "standard", "distance": 3.229, "atom1_id": "///2/1538/N3", "atom2_id": "///2/1596/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3074, "atom1_serNum": 29356, "atom2_serNum": 30565, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///2/1538/N4", "atom2_id": "///2/1595/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3075, "atom1_serNum": 29360, "atom2_serNum": 63214, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///2/1539/OP1", "atom2_id": "///U/44/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3076, "atom1_serNum": 29360, "atom2_serNum": 63223, "donAcc_type": "standard", "distance": 3.475, "atom1_id": "///2/1539/OP1", "atom2_id": "///U/45/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3077, "atom1_serNum": 29361, "atom2_serNum": 63213, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///2/1539/OP2", "atom2_id": "///U/43/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3078, "atom1_serNum": 29369, "atom2_serNum": 63243, "donAcc_type": "acceptable", "distance": 2.787, "atom1_id": "///2/1539/O2'", "atom2_id": "///U/48/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3079, "atom1_serNum": 29374, "atom2_serNum": 30544, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///2/1539/N3", "atom2_id": "///2/1594/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3080, "atom1_serNum": 29374, "atom2_serNum": 30565, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///2/1539/N3", "atom2_id": "///2/1595/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3081, "atom1_serNum": 29376, "atom2_serNum": 30543, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///2/1539/O4", "atom2_id": "///2/1594/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3082, "atom1_serNum": 29381, "atom2_serNum": 63213, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///2/1540/OP2", "atom2_id": "///U/43/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3083, "atom1_serNum": 29396, "atom2_serNum": 30523, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///2/1540/O6", "atom2_id": "///2/1593/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3084, "atom1_serNum": 29397, "atom2_serNum": 30521, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///2/1540/N1", "atom2_id": "///2/1593/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3085, "atom1_serNum": 29399, "atom2_serNum": 30520, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///2/1540/N2", "atom2_id": "///2/1593/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3086, "atom1_serNum": 29404, "atom2_serNum": 63334, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///2/1541/OP2", "atom2_id": "///U/56/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3087, "atom1_serNum": 29419, "atom2_serNum": 30503, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///2/1541/O6", "atom2_id": "///2/1592/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3088, "atom1_serNum": 29420, "atom2_serNum": 30501, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///2/1541/N1", "atom2_id": "///2/1592/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3089, "atom1_serNum": 29422, "atom2_serNum": 30500, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///2/1541/N2", "atom2_id": "///2/1592/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3090, "atom1_serNum": 29426, "atom2_serNum": 63372, "donAcc_type": "standard", "distance": 2.264, "atom1_id": "///2/1542/OP1", "atom2_id": "///U/62/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3091, "atom1_serNum": 29427, "atom2_serNum": 63383, "donAcc_type": "standard", "distance": 3.908, "atom1_id": "///2/1542/OP2", "atom2_id": "///U/63/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3092, "atom1_serNum": 29440, "atom2_serNum": 30483, "donAcc_type": "standard", "distance": 3.190, "atom1_id": "///2/1542/N3", "atom2_id": "///2/1591/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3093, "atom1_serNum": 29446, "atom2_serNum": 59742, "donAcc_type": "standard", "distance": 3.994, "atom1_id": "///2/1543/OP1", "atom2_id": "///R/37/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3094, "atom1_serNum": 29446, "atom2_serNum": 63373, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///2/1543/OP1", "atom2_id": "///U/62/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3095, "atom1_serNum": 29447, "atom2_serNum": 63372, "donAcc_type": "standard", "distance": 3.215, "atom1_id": "///2/1543/OP2", "atom2_id": "///U/62/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3096, "atom1_serNum": 29447, "atom2_serNum": 63373, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///2/1543/OP2", "atom2_id": "///U/62/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3097, "atom1_serNum": 29475, "atom2_serNum": 60047, "donAcc_type": "acceptable", "distance": 2.304, "atom1_id": "///2/1544/O2'", "atom2_id": "///R/75/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3098, "atom1_serNum": 29479, "atom2_serNum": 30441, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///2/1544/O2", "atom2_id": "///2/1589/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3099, "atom1_serNum": 29480, "atom2_serNum": 30441, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///2/1544/N3", "atom2_id": "///2/1589/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3100, "atom1_serNum": 29482, "atom2_serNum": 30438, "donAcc_type": "standard", "distance": 3.280, "atom1_id": "///2/1544/N4", "atom2_id": "///2/1589/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3101, "atom1_serNum": 29486, "atom2_serNum": 60040, "donAcc_type": "standard", "distance": 3.472, "atom1_id": "///2/1545/OP1", "atom2_id": "///R/74/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3102, "atom1_serNum": 29495, "atom2_serNum": 29513, "donAcc_type": "acceptable", "distance": 3.024, "atom1_id": "///2/1545/O2'", "atom2_id": "///2/1546/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3103, "atom1_serNum": 29495, "atom2_serNum": 32183, "donAcc_type": "acceptable", "distance": 3.081, "atom1_id": "///2/1545/O2'", "atom2_id": "///2/1671/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3104, "atom1_serNum": 29502, "atom2_serNum": 31838, "donAcc_type": "standard", "distance": 3.597, "atom1_id": "///2/1545/N6", "atom2_id": "///2/1655/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3105, "atom1_serNum": 29503, "atom2_serNum": 31829, "donAcc_type": "standard", "distance": 3.913, "atom1_id": "///2/1545/N1", "atom2_id": "///2/1654/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3106, "atom1_serNum": 29505, "atom2_serNum": 32183, "donAcc_type": "acceptable", "distance": 2.510, "atom1_id": "///2/1545/N3", "atom2_id": "///2/1671/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3107, "atom1_serNum": 29517, "atom2_serNum": 32161, "donAcc_type": "acceptable", "distance": 2.948, "atom1_id": "///2/1546/O2'", "atom2_id": "///2/1670/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3108, "atom1_serNum": 29517, "atom2_serNum": 32174, "donAcc_type": "acceptable", "distance": 2.496, "atom1_id": "///2/1546/O2'", "atom2_id": "///2/1671/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3109, "atom1_serNum": 29527, "atom2_serNum": 31846, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///2/1546/N2", "atom2_id": "///2/1655/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3110, "atom1_serNum": 29527, "atom2_serNum": 32163, "donAcc_type": "acceptable", "distance": 3.099, "atom1_id": "///2/1546/N2", "atom2_id": "///2/1670/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3111, "atom1_serNum": 29527, "atom2_serNum": 32167, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/1546/N2", "atom2_id": "///2/1670/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3112, "atom1_serNum": 29528, "atom2_serNum": 32163, "donAcc_type": "acceptable", "distance": 2.884, "atom1_id": "///2/1546/N3", "atom2_id": "///2/1670/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3113, "atom1_serNum": 29540, "atom2_serNum": 32140, "donAcc_type": "acceptable", "distance": 3.552, "atom1_id": "///2/1547/O2'", "atom2_id": "///2/1669/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3114, "atom1_serNum": 29544, "atom2_serNum": 32150, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///2/1547/O2", "atom2_id": "///2/1669/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3115, "atom1_serNum": 29547, "atom2_serNum": 30376, "donAcc_type": "standard", "distance": 2.385, "atom1_id": "///2/1547/N4", "atom2_id": "///2/1586/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3116, "atom1_serNum": 29551, "atom2_serNum": 64344, "donAcc_type": "standard", "distance": 2.321, "atom1_id": "///2/1548/OP1", "atom2_id": "///V/62/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3117, "atom1_serNum": 29560, "atom2_serNum": 31862, "donAcc_type": "acceptable", "distance": 3.524, "atom1_id": "///2/1548/O2'", "atom2_id": "///2/1656/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3118, "atom1_serNum": 29560, "atom2_serNum": 31881, "donAcc_type": "acceptable", "distance": 3.640, "atom1_id": "///2/1548/O2'", "atom2_id": "///2/1657/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3119, "atom1_serNum": 29567, "atom2_serNum": 30334, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///2/1548/O6", "atom2_id": "///2/1584/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3120, "atom1_serNum": 29574, "atom2_serNum": 41447, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///2/1549/OP1", "atom2_id": "///E/8/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3121, "atom1_serNum": 29574, "atom2_serNum": 71455, "donAcc_type": "acceptable", "distance": 2.384, "atom1_id": "///2/1549/OP1", "atom2_id": "///e/34/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3122, "atom1_serNum": 29575, "atom2_serNum": 41447, "donAcc_type": "standard", "distance": 3.330, "atom1_id": "///2/1549/OP2", "atom2_id": "///E/8/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3123, "atom1_serNum": 29583, "atom2_serNum": 29599, "donAcc_type": "acceptable", "distance": 2.955, "atom1_id": "///2/1549/O2'", "atom2_id": "///2/1550/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3124, "atom1_serNum": 29596, "atom2_serNum": 30229, "donAcc_type": "standard", "distance": 3.147, "atom1_id": "///2/1550/O5'", "atom2_id": "///2/1579/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3125, "atom1_serNum": 29603, "atom2_serNum": 29771, "donAcc_type": "acceptable", "distance": 3.067, "atom1_id": "///2/1550/O2'", "atom2_id": "///2/1558/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3126, "atom1_serNum": 29603, "atom2_serNum": 29775, "donAcc_type": "acceptable", "distance": 2.115, "atom1_id": "///2/1550/O2'", "atom2_id": "///2/1558/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3127, "atom1_serNum": 29610, "atom2_serNum": 30293, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1550/O6", "atom2_id": "///2/1582/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3128, "atom1_serNum": 29611, "atom2_serNum": 30291, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/1550/N1", "atom2_id": "///2/1582/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3129, "atom1_serNum": 29613, "atom2_serNum": 29795, "donAcc_type": "standard", "distance": 2.341, "atom1_id": "///2/1550/N2", "atom2_id": "///2/1559/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3130, "atom1_serNum": 29613, "atom2_serNum": 30290, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///2/1550/N2", "atom2_id": "///2/1582/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3131, "atom1_serNum": 29614, "atom2_serNum": 30189, "donAcc_type": "standard", "distance": 3.195, "atom1_id": "///2/1550/N3", "atom2_id": "///2/1577/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3132, "atom1_serNum": 29617, "atom2_serNum": 30229, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///2/1551/OP1", "atom2_id": "///2/1579/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3133, "atom1_serNum": 29637, "atom2_serNum": 30209, "donAcc_type": "questionable", "distance": 2.820, "atom1_id": "///2/1552/OP1", "atom2_id": "///2/1578/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3134, "atom1_serNum": 29642, "atom2_serNum": 41457, "donAcc_type": "standard", "distance": 3.112, "atom1_id": "///2/1552/O4'", "atom2_id": "///E/9/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3135, "atom1_serNum": 29646, "atom2_serNum": 29709, "donAcc_type": "acceptable", "distance": 3.233, "atom1_id": "///2/1552/O2'", "atom2_id": "///2/1555/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3136, "atom1_serNum": 29650, "atom2_serNum": 29721, "donAcc_type": "questionable", "distance": 3.212, "atom1_id": "///2/1552/N7", "atom2_id": "///2/1556/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3137, "atom1_serNum": 29653, "atom2_serNum": 29767, "donAcc_type": "questionable", "distance": 3.224, "atom1_id": "///2/1552/O6", "atom2_id": "///2/1558/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3138, "atom1_serNum": 29657, "atom2_serNum": 41458, "donAcc_type": "standard", "distance": 2.633, "atom1_id": "///2/1552/N3", "atom2_id": "///E/9/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3139, "atom1_serNum": 29669, "atom2_serNum": 29681, "donAcc_type": "acceptable", "distance": 3.111, "atom1_id": "///2/1553/O2'", "atom2_id": "///2/1554/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3140, "atom1_serNum": 29669, "atom2_serNum": 29682, "donAcc_type": "acceptable", "distance": 3.029, "atom1_id": "///2/1553/O2'", "atom2_id": "///2/1554/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3141, "atom1_serNum": 29669, "atom2_serNum": 29709, "donAcc_type": "acceptable", "distance": 3.131, "atom1_id": "///2/1553/O2'", "atom2_id": "///2/1555/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3142, "atom1_serNum": 29681, "atom2_serNum": 29709, "donAcc_type": "acceptable", "distance": 3.281, "atom1_id": "///2/1554/OP2", "atom2_id": "///2/1555/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3143, "atom1_serNum": 29716, "atom2_serNum": 71319, "donAcc_type": "questionable", "distance": 2.982, "atom1_id": "///2/1555/O4", "atom2_id": "///e/18/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3144, "atom1_serNum": 29729, "atom2_serNum": 29744, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///2/1556/O2'", "atom2_id": "///2/1557/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3145, "atom1_serNum": 29729, "atom2_serNum": 29747, "donAcc_type": "acceptable", "distance": 2.587, "atom1_id": "///2/1556/O2'", "atom2_id": "///2/1557/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3146, "atom1_serNum": 29737, "atom2_serNum": 71282, "donAcc_type": "questionable", "distance": 3.333, "atom1_id": "///2/1556/N1", "atom2_id": "///e/13/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3147, "atom1_serNum": 29775, "atom2_serNum": 30189, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///2/1558/O2", "atom2_id": "///2/1577/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3148, "atom1_serNum": 29776, "atom2_serNum": 30187, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1558/N3", "atom2_id": "///2/1577/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3149, "atom1_serNum": 29778, "atom2_serNum": 30186, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///2/1558/N4", "atom2_id": "///2/1577/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3150, "atom1_serNum": 29791, "atom2_serNum": 30310, "donAcc_type": "acceptable", "distance": 2.855, "atom1_id": "///2/1559/O2'", "atom2_id": "///2/1583/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3151, "atom1_serNum": 29795, "atom2_serNum": 30166, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///2/1559/O2", "atom2_id": "///2/1576/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3152, "atom1_serNum": 29796, "atom2_serNum": 30164, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1559/N3", "atom2_id": "///2/1576/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3153, "atom1_serNum": 29796, "atom2_serNum": 30187, "donAcc_type": "standard", "distance": 3.025, "atom1_id": "///2/1559/N3", "atom2_id": "///2/1577/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3154, "atom1_serNum": 29798, "atom2_serNum": 30163, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///2/1559/N4", "atom2_id": "///2/1576/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3155, "atom1_serNum": 29811, "atom2_serNum": 30306, "donAcc_type": "acceptable", "distance": 3.498, "atom1_id": "///2/1560/O2'", "atom2_id": "///2/1583/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3156, "atom1_serNum": 29815, "atom2_serNum": 30141, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///2/1560/O2", "atom2_id": "///2/1575/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3157, "atom1_serNum": 29815, "atom2_serNum": 30164, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///2/1560/O2", "atom2_id": "///2/1576/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3158, "atom1_serNum": 29816, "atom2_serNum": 30140, "donAcc_type": "standard", "distance": 3.796, "atom1_id": "///2/1560/N3", "atom2_id": "///2/1575/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3159, "atom1_serNum": 29844, "atom2_serNum": 63440, "donAcc_type": "standard", "distance": 2.462, "atom1_id": "///2/1562/OP1", "atom2_id": "///U/72/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3160, "atom1_serNum": 29844, "atom2_serNum": 63447, "donAcc_type": "standard", "distance": 2.430, "atom1_id": "///2/1562/OP1", "atom2_id": "///U/73/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3161, "atom1_serNum": 29844, "atom2_serNum": 63451, "donAcc_type": "standard", "distance": 3.439, "atom1_id": "///2/1562/OP1", "atom2_id": "///U/74/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3162, "atom1_serNum": 29851, "atom2_serNum": 63806, "donAcc_type": "standard", "distance": 3.362, "atom1_id": "///2/1562/O3'", "atom2_id": "///U/120/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3163, "atom1_serNum": 29864, "atom2_serNum": 63817, "donAcc_type": "standard", "distance": 3.759, "atom1_id": "///2/1563/OP1", "atom2_id": "///U/121/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3164, "atom1_serNum": 29865, "atom2_serNum": 63440, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///2/1563/OP2", "atom2_id": "///U/72/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3165, "atom1_serNum": 29871, "atom2_serNum": 63820, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/1563/O3'", "atom2_id": "///U/121/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3166, "atom1_serNum": 29881, "atom2_serNum": 30097, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///2/1563/N1", "atom2_id": "///2/1573/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3167, "atom1_serNum": 29883, "atom2_serNum": 30097, "donAcc_type": "standard", "distance": 2.390, "atom1_id": "///2/1563/N2", "atom2_id": "///2/1573/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3168, "atom1_serNum": 29887, "atom2_serNum": 63700, "donAcc_type": "standard", "distance": 2.308, "atom1_id": "///2/1564/OP1", "atom2_id": "///U/105/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3169, "atom1_serNum": 29900, "atom2_serNum": 30057, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///2/1564/O2", "atom2_id": "///2/1571/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3170, "atom1_serNum": 29901, "atom2_serNum": 30055, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///2/1564/N3", "atom2_id": "///2/1571/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3171, "atom1_serNum": 29901, "atom2_serNum": 30077, "donAcc_type": "standard", "distance": 3.126, "atom1_id": "///2/1564/N3", "atom2_id": "///2/1572/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3172, "atom1_serNum": 29903, "atom2_serNum": 30054, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///2/1564/N4", "atom2_id": "///2/1571/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3173, "atom1_serNum": 29908, "atom2_serNum": 63662, "donAcc_type": "standard", "distance": 3.748, "atom1_id": "///2/1565/OP2", "atom2_id": "///U/101/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3174, "atom1_serNum": 29920, "atom2_serNum": 30034, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///2/1565/O2", "atom2_id": "///2/1570/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3175, "atom1_serNum": 29921, "atom2_serNum": 30032, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///2/1565/N3", "atom2_id": "///2/1570/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3176, "atom1_serNum": 29923, "atom2_serNum": 30031, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///2/1565/N4", "atom2_id": "///2/1570/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3177, "atom1_serNum": 29923, "atom2_serNum": 30054, "donAcc_type": "standard", "distance": 2.632, "atom1_id": "///2/1565/N4", "atom2_id": "///2/1571/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3178, "atom1_serNum": 29936, "atom2_serNum": 29989, "donAcc_type": "acceptable", "distance": 3.258, "atom1_id": "///2/1566/O2'", "atom2_id": "///2/1568/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3179, "atom1_serNum": 29940, "atom2_serNum": 63665, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///2/1566/N7", "atom2_id": "///U/101/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3180, "atom1_serNum": 29943, "atom2_serNum": 63664, "donAcc_type": "standard", "distance": 3.055, "atom1_id": "///2/1566/O6", "atom2_id": "///U/101/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3181, "atom1_serNum": 29943, "atom2_serNum": 63665, "donAcc_type": "standard", "distance": 2.372, "atom1_id": "///2/1566/O6", "atom2_id": "///U/101/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3182, "atom1_serNum": 29944, "atom2_serNum": 29994, "donAcc_type": "standard", "distance": 3.263, "atom1_id": "///2/1566/N1", "atom2_id": "///2/1569/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3183, "atom1_serNum": 29946, "atom2_serNum": 29994, "donAcc_type": "standard", "distance": 2.381, "atom1_id": "///2/1566/N2", "atom2_id": "///2/1569/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3184, "atom1_serNum": 29959, "atom2_serNum": 63164, "donAcc_type": "acceptable", "distance": 3.491, "atom1_id": "///2/1567/O2'", "atom2_id": "///U/38/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3185, "atom1_serNum": 29973, "atom2_serNum": 63627, "donAcc_type": "acceptable", "distance": 2.256, "atom1_id": "///2/1568/OP1", "atom2_id": "///U/96/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3186, "atom1_serNum": 29973, "atom2_serNum": 63637, "donAcc_type": "standard", "distance": 3.215, "atom1_id": "///2/1568/OP1", "atom2_id": "///U/98/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3187, "atom1_serNum": 29973, "atom2_serNum": 63642, "donAcc_type": "acceptable", "distance": 2.733, "atom1_id": "///2/1568/OP1", "atom2_id": "///U/98/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3188, "atom1_serNum": 29982, "atom2_serNum": 29998, "donAcc_type": "acceptable", "distance": 2.971, "atom1_id": "///2/1568/O2'", "atom2_id": "///2/1569/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3189, "atom1_serNum": 29982, "atom2_serNum": 31243, "donAcc_type": "acceptable", "distance": 2.672, "atom1_id": "///2/1568/O2'", "atom2_id": "///2/1627/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3190, "atom1_serNum": 29982, "atom2_serNum": 63194, "donAcc_type": "acceptable", "distance": 3.616, "atom1_id": "///2/1568/O2'", "atom2_id": "///U/41/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3191, "atom1_serNum": 29986, "atom2_serNum": 31243, "donAcc_type": "acceptable", "distance": 2.913, "atom1_id": "///2/1568/O2", "atom2_id": "///2/1627/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3192, "atom1_serNum": 29993, "atom2_serNum": 63636, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/1569/OP1", "atom2_id": "///U/97/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3193, "atom1_serNum": 30002, "atom2_serNum": 31223, "donAcc_type": "acceptable", "distance": 3.050, "atom1_id": "///2/1569/O2'", "atom2_id": "///2/1626/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3194, "atom1_serNum": 30002, "atom2_serNum": 31239, "donAcc_type": "acceptable", "distance": 3.588, "atom1_id": "///2/1569/O2'", "atom2_id": "///2/1627/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3195, "atom1_serNum": 30010, "atom2_serNum": 30949, "donAcc_type": "acceptable", "distance": 2.899, "atom1_id": "///2/1569/N1", "atom2_id": "///2/1613/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3196, "atom1_serNum": 30012, "atom2_serNum": 30959, "donAcc_type": "standard", "distance": 3.141, "atom1_id": "///2/1569/N3", "atom2_id": "///2/1613/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3197, "atom1_serNum": 30024, "atom2_serNum": 30972, "donAcc_type": "acceptable", "distance": 3.021, "atom1_id": "///2/1570/O2'", "atom2_id": "///2/1614/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3198, "atom1_serNum": 30070, "atom2_serNum": 30083, "donAcc_type": "acceptable", "distance": 2.480, "atom1_id": "///2/1572/O2'", "atom2_id": "///2/1573/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3199, "atom1_serNum": 30133, "atom2_serNum": 30152, "donAcc_type": "acceptable", "distance": 2.971, "atom1_id": "///2/1575/O2'", "atom2_id": "///2/1576/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3200, "atom1_serNum": 30156, "atom2_serNum": 30282, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///2/1576/O2'", "atom2_id": "///2/1582/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3201, "atom1_serNum": 30166, "atom2_serNum": 30290, "donAcc_type": "standard", "distance": 2.452, "atom1_id": "///2/1576/N2", "atom2_id": "///2/1582/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3202, "atom1_serNum": 30179, "atom2_serNum": 30218, "donAcc_type": "acceptable", "distance": 3.011, "atom1_id": "///2/1577/O2'", "atom2_id": "///2/1579/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3203, "atom1_serNum": 30179, "atom2_serNum": 30232, "donAcc_type": "acceptable", "distance": 2.507, "atom1_id": "///2/1577/O2'", "atom2_id": "///2/1579/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3204, "atom1_serNum": 30202, "atom2_serNum": 30214, "donAcc_type": "acceptable", "distance": 3.126, "atom1_id": "///2/1578/O2'", "atom2_id": "///2/1579/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3205, "atom1_serNum": 30214, "atom2_serNum": 41430, "donAcc_type": "standard", "distance": 3.582, "atom1_id": "///2/1579/OP2", "atom2_id": "///E/7/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3206, "atom1_serNum": 30222, "atom2_serNum": 30258, "donAcc_type": "acceptable", "distance": 2.290, "atom1_id": "///2/1579/O2'", "atom2_id": "///2/1581/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3207, "atom1_serNum": 30222, "atom2_serNum": 30293, "donAcc_type": "acceptable", "distance": 3.038, "atom1_id": "///2/1579/O2'", "atom2_id": "///2/1582/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3208, "atom1_serNum": 30235, "atom2_serNum": 64545, "donAcc_type": "standard", "distance": 2.474, "atom1_id": "///2/1580/OP1", "atom2_id": "///V/86/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3209, "atom1_serNum": 30236, "atom2_serNum": 64319, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///2/1580/OP2", "atom2_id": "///V/59/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3210, "atom1_serNum": 30236, "atom2_serNum": 64545, "donAcc_type": "standard", "distance": 3.369, "atom1_id": "///2/1580/OP2", "atom2_id": "///V/86/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3211, "atom1_serNum": 30258, "atom2_serNum": 30293, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///2/1581/OP2", "atom2_id": "///2/1582/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3212, "atom1_serNum": 30286, "atom2_serNum": 30302, "donAcc_type": "acceptable", "distance": 2.735, "atom1_id": "///2/1582/O2'", "atom2_id": "///2/1583/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3213, "atom1_serNum": 30298, "atom2_serNum": 30326, "donAcc_type": "acceptable", "distance": 2.435, "atom1_id": "///2/1583/OP2", "atom2_id": "///2/1584/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3214, "atom1_serNum": 30317, "atom2_serNum": 63480, "donAcc_type": "standard", "distance": 3.270, "atom1_id": "///2/1584/OP1", "atom2_id": "///U/77/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3215, "atom1_serNum": 30318, "atom2_serNum": 30399, "donAcc_type": "standard", "distance": 3.924, "atom1_id": "///2/1584/OP2", "atom2_id": "///2/1587/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3216, "atom1_serNum": 30322, "atom2_serNum": 30367, "donAcc_type": "questionable", "distance": 2.885, "atom1_id": "///2/1584/O4'", "atom2_id": "///2/1586/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3217, "atom1_serNum": 30337, "atom2_serNum": 30361, "donAcc_type": "questionable", "distance": 3.101, "atom1_id": "///2/1584/N3", "atom2_id": "///2/1586/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3218, "atom1_serNum": 30349, "atom2_serNum": 30381, "donAcc_type": "acceptable", "distance": 2.831, "atom1_id": "///2/1585/O2'", "atom2_id": "///2/1587/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3219, "atom1_serNum": 30353, "atom2_serNum": 60039, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///2/1585/O2", "atom2_id": "///R/73/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3220, "atom1_serNum": 30380, "atom2_serNum": 30399, "donAcc_type": "standard", "distance": 2.407, "atom1_id": "///2/1587/OP1", "atom2_id": "///2/1587/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3221, "atom1_serNum": 30380, "atom2_serNum": 63480, "donAcc_type": "standard", "distance": 3.655, "atom1_id": "///2/1587/OP1", "atom2_id": "///U/77/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3222, "atom1_serNum": 30389, "atom2_serNum": 30403, "donAcc_type": "acceptable", "distance": 2.650, "atom1_id": "///2/1587/O2'", "atom2_id": "///2/1588/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3223, "atom1_serNum": 30419, "atom2_serNum": 32202, "donAcc_type": "standard", "distance": 3.722, "atom1_id": "///2/1588/N6", "atom2_id": "///2/1672/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3224, "atom1_serNum": 30420, "atom2_serNum": 32193, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///2/1588/N1", "atom2_id": "///2/1671/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3225, "atom1_serNum": 30422, "atom2_serNum": 31819, "donAcc_type": "acceptable", "distance": 2.757, "atom1_id": "///2/1588/N3", "atom2_id": "///2/1654/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3226, "atom1_serNum": 30434, "atom2_serNum": 31797, "donAcc_type": "acceptable", "distance": 3.175, "atom1_id": "///2/1589/O2'", "atom2_id": "///2/1653/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3227, "atom1_serNum": 30434, "atom2_serNum": 31799, "donAcc_type": "acceptable", "distance": 2.962, "atom1_id": "///2/1589/O2'", "atom2_id": "///2/1653/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3228, "atom1_serNum": 30434, "atom2_serNum": 31815, "donAcc_type": "acceptable", "distance": 3.414, "atom1_id": "///2/1589/O2'", "atom2_id": "///2/1654/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3229, "atom1_serNum": 30442, "atom2_serNum": 32206, "donAcc_type": "acceptable", "distance": 3.871, "atom1_id": "///2/1589/N1", "atom2_id": "///2/1672/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3230, "atom1_serNum": 30444, "atom2_serNum": 31799, "donAcc_type": "acceptable", "distance": 3.031, "atom1_id": "///2/1589/N3", "atom2_id": "///2/1653/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3231, "atom1_serNum": 30452, "atom2_serNum": 31799, "donAcc_type": "acceptable", "distance": 2.866, "atom1_id": "///2/1590/O4'", "atom2_id": "///2/1653/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3232, "atom1_serNum": 30456, "atom2_serNum": 31786, "donAcc_type": "acceptable", "distance": 3.231, "atom1_id": "///2/1590/O2'", "atom2_id": "///2/1652/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3233, "atom1_serNum": 30463, "atom2_serNum": 60061, "donAcc_type": "questionable", "distance": 3.414, "atom1_id": "///2/1590/N4", "atom2_id": "///R/77/NE2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3234, "atom1_serNum": 30507, "atom2_serNum": 69081, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///2/1593/OP1", "atom2_id": "///a/103/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3235, "atom1_serNum": 30520, "atom2_serNum": 62963, "donAcc_type": "standard", "distance": 3.311, "atom1_id": "///2/1593/O2", "atom2_id": "///U/12/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3236, "atom1_serNum": 30523, "atom2_serNum": 30543, "donAcc_type": "questionable", "distance": 2.975, "atom1_id": "///2/1593/N4", "atom2_id": "///2/1594/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3237, "atom1_serNum": 30528, "atom2_serNum": 69082, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///2/1594/OP2", "atom2_id": "///a/104/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3238, "atom1_serNum": 30534, "atom2_serNum": 69071, "donAcc_type": "standard", "distance": 3.439, "atom1_id": "///2/1594/O3'", "atom2_id": "///a/102/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3239, "atom1_serNum": 30570, "atom2_serNum": 68942, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///2/1596/OP2", "atom2_id": "///a/85/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3240, "atom1_serNum": 30589, "atom2_serNum": 61897, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///2/1597/OP1", "atom2_id": "///T/25/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3241, "atom1_serNum": 30590, "atom2_serNum": 68921, "donAcc_type": "acceptable", "distance": 3.092, "atom1_id": "///2/1597/OP2", "atom2_id": "///a/82/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3242, "atom1_serNum": 30590, "atom2_serNum": 68942, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///2/1597/OP2", "atom2_id": "///a/85/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3243, "atom1_serNum": 30590, "atom2_serNum": 68945, "donAcc_type": "standard", "distance": 2.291, "atom1_id": "///2/1597/OP2", "atom2_id": "///a/85/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3244, "atom1_serNum": 30591, "atom2_serNum": 68921, "donAcc_type": "acceptable", "distance": 2.932, "atom1_id": "///2/1597/O5'", "atom2_id": "///a/82/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3245, "atom1_serNum": 30610, "atom2_serNum": 68921, "donAcc_type": "acceptable", "distance": 3.116, "atom1_id": "///2/1598/OP2", "atom2_id": "///a/82/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3246, "atom1_serNum": 30611, "atom2_serNum": 68910, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/1598/O5'", "atom2_id": "///a/80/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3247, "atom1_serNum": 30618, "atom2_serNum": 30633, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///2/1598/O2'", "atom2_id": "///2/1599/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3248, "atom1_serNum": 30618, "atom2_serNum": 68912, "donAcc_type": "acceptable", "distance": 3.390, "atom1_id": "///2/1598/O2'", "atom2_id": "///a/81/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3249, "atom1_serNum": 30622, "atom2_serNum": 68944, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1598/N7", "atom2_id": "///a/85/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3250, "atom1_serNum": 30625, "atom2_serNum": 68944, "donAcc_type": "standard", "distance": 2.407, "atom1_id": "///2/1598/O6", "atom2_id": "///a/85/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3251, "atom1_serNum": 30652, "atom2_serNum": 68610, "donAcc_type": "standard", "distance": 3.222, "atom1_id": "///2/1600/OP1", "atom2_id": "///a/44/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3252, "atom1_serNum": 30675, "atom2_serNum": 68609, "donAcc_type": "standard", "distance": 2.581, "atom1_id": "///2/1601/OP1", "atom2_id": "///a/43/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3253, "atom1_serNum": 30677, "atom2_serNum": 31439, "donAcc_type": "questionable", "distance": 3.362, "atom1_id": "///2/1601/O5'", "atom2_id": "///2/1636/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3254, "atom1_serNum": 30684, "atom2_serNum": 31360, "donAcc_type": "acceptable", "distance": 3.673, "atom1_id": "///2/1601/O2'", "atom2_id": "///2/1633/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3255, "atom1_serNum": 30684, "atom2_serNum": 31419, "donAcc_type": "acceptable", "distance": 3.299, "atom1_id": "///2/1601/O2'", "atom2_id": "///2/1635/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3256, "atom1_serNum": 30691, "atom2_serNum": 31425, "donAcc_type": "standard", "distance": 3.121, "atom1_id": "///2/1601/N6", "atom2_id": "///2/1636/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3257, "atom1_serNum": 30698, "atom2_serNum": 30779, "donAcc_type": "questionable", "distance": 3.346, "atom1_id": "///2/1602/OP2", "atom2_id": "///2/1605/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3258, "atom1_serNum": 30704, "atom2_serNum": 30736, "donAcc_type": "standard", "distance": 3.279, "atom1_id": "///2/1602/O3'", "atom2_id": "///2/1603/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3259, "atom1_serNum": 30706, "atom2_serNum": 30736, "donAcc_type": "acceptable", "distance": 2.845, "atom1_id": "///2/1602/O2'", "atom2_id": "///2/1603/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3260, "atom1_serNum": 30719, "atom2_serNum": 61989, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///2/1603/O5'", "atom2_id": "///T/38/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3261, "atom1_serNum": 30722, "atom2_serNum": 61988, "donAcc_type": "standard", "distance": 2.453, "atom1_id": "///2/1603/O4'", "atom2_id": "///T/38/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3262, "atom1_serNum": 30756, "atom2_serNum": 31419, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///2/1604/O6", "atom2_id": "///2/1635/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3263, "atom1_serNum": 30757, "atom2_serNum": 31417, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///2/1604/N1", "atom2_id": "///2/1635/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3264, "atom1_serNum": 30759, "atom2_serNum": 31416, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///2/1604/N2", "atom2_id": "///2/1635/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3265, "atom1_serNum": 30763, "atom2_serNum": 63538, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///2/1605/OP1", "atom2_id": "///U/84/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3266, "atom1_serNum": 30780, "atom2_serNum": 31360, "donAcc_type": "standard", "distance": 3.796, "atom1_id": "///2/1605/N1", "atom2_id": "///2/1633/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3267, "atom1_serNum": 30782, "atom2_serNum": 31394, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///2/1605/N2", "atom2_id": "///2/1634/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3268, "atom1_serNum": 30783, "atom2_serNum": 31397, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///2/1605/N3", "atom2_id": "///2/1634/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3269, "atom1_serNum": 30805, "atom2_serNum": 31372, "donAcc_type": "standard", "distance": 3.715, "atom1_id": "///2/1606/N2", "atom2_id": "///2/1633/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3270, "atom1_serNum": 30806, "atom2_serNum": 30822, "donAcc_type": "questionable", "distance": 3.373, "atom1_id": "///2/1606/N3", "atom2_id": "///2/1607/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3271, "atom1_serNum": 30825, "atom2_serNum": 31341, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///2/1607/N6", "atom2_id": "///2/1632/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3272, "atom1_serNum": 30825, "atom2_serNum": 31356, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///2/1607/N6", "atom2_id": "///2/1632/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3273, "atom1_serNum": 30831, "atom2_serNum": 62768, "donAcc_type": "standard", "distance": 2.272, "atom1_id": "///2/1608/OP1", "atom2_id": "///T/130/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3274, "atom1_serNum": 30845, "atom2_serNum": 31329, "donAcc_type": "standard", "distance": 3.469, "atom1_id": "///2/1608/N3", "atom2_id": "///2/1631/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3275, "atom1_serNum": 30847, "atom2_serNum": 31330, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///2/1608/O4", "atom2_id": "///2/1631/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3276, "atom1_serNum": 30847, "atom2_serNum": 31355, "donAcc_type": "standard", "distance": 2.397, "atom1_id": "///2/1608/O4", "atom2_id": "///2/1632/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3277, "atom1_serNum": 30851, "atom2_serNum": 62769, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///2/1609/OP1", "atom2_id": "///T/131/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3278, "atom1_serNum": 30851, "atom2_serNum": 62776, "donAcc_type": "standard", "distance": 3.200, "atom1_id": "///2/1609/OP1", "atom2_id": "///T/132/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3279, "atom1_serNum": 30858, "atom2_serNum": 62720, "donAcc_type": "standard", "distance": 3.355, "atom1_id": "///2/1609/O3'", "atom2_id": "///T/125/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3280, "atom1_serNum": 30865, "atom2_serNum": 31311, "donAcc_type": "questionable", "distance": 3.013, "atom1_id": "///2/1609/N3", "atom2_id": "///2/1630/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3281, "atom1_serNum": 30865, "atom2_serNum": 31330, "donAcc_type": "standard", "distance": 3.118, "atom1_id": "///2/1609/N3", "atom2_id": "///2/1631/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3282, "atom1_serNum": 30867, "atom2_serNum": 31311, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///2/1609/N4", "atom2_id": "///2/1630/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3283, "atom1_serNum": 30867, "atom2_serNum": 31332, "donAcc_type": "standard", "distance": 3.423, "atom1_id": "///2/1609/N4", "atom2_id": "///2/1631/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3284, "atom1_serNum": 30871, "atom2_serNum": 62684, "donAcc_type": "standard", "distance": 3.264, "atom1_id": "///2/1610/OP1", "atom2_id": "///T/121/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3285, "atom1_serNum": 30871, "atom2_serNum": 62687, "donAcc_type": "standard", "distance": 2.480, "atom1_id": "///2/1610/OP1", "atom2_id": "///T/121/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3286, "atom1_serNum": 30873, "atom2_serNum": 62687, "donAcc_type": "standard", "distance": 3.271, "atom1_id": "///2/1610/O5'", "atom2_id": "///T/121/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3287, "atom1_serNum": 30880, "atom2_serNum": 62396, "donAcc_type": "acceptable", "distance": 3.786, "atom1_id": "///2/1610/O2'", "atom2_id": "///T/86/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3288, "atom1_serNum": 30887, "atom2_serNum": 31290, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1610/O6", "atom2_id": "///2/1629/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3289, "atom1_serNum": 30888, "atom2_serNum": 31288, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///2/1610/N1", "atom2_id": "///2/1629/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3290, "atom1_serNum": 30890, "atom2_serNum": 31287, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///2/1610/N2", "atom2_id": "///2/1629/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3291, "atom1_serNum": 30890, "atom2_serNum": 62382, "donAcc_type": "standard", "distance": 2.701, "atom1_id": "///2/1610/N2", "atom2_id": "///T/85/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3292, "atom1_serNum": 30895, "atom2_serNum": 62686, "donAcc_type": "standard", "distance": 3.130, "atom1_id": "///2/1611/OP2", "atom2_id": "///T/121/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3293, "atom1_serNum": 30895, "atom2_serNum": 62687, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///2/1611/OP2", "atom2_id": "///T/121/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3294, "atom1_serNum": 30901, "atom2_serNum": 58614, "donAcc_type": "standard", "distance": 3.445, "atom1_id": "///2/1611/O3'", "atom2_id": "///Q/18/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3295, "atom1_serNum": 30903, "atom2_serNum": 62401, "donAcc_type": "acceptable", "distance": 2.557, "atom1_id": "///2/1611/O2'", "atom2_id": "///T/87/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3296, "atom1_serNum": 30910, "atom2_serNum": 31270, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///2/1611/O6", "atom2_id": "///2/1628/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3297, "atom1_serNum": 30910, "atom2_serNum": 31290, "donAcc_type": "standard", "distance": 3.286, "atom1_id": "///2/1611/O6", "atom2_id": "///2/1629/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3298, "atom1_serNum": 30911, "atom2_serNum": 31268, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/1611/N1", "atom2_id": "///2/1628/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3299, "atom1_serNum": 30913, "atom2_serNum": 31267, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///2/1611/N2", "atom2_id": "///2/1628/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3300, "atom1_serNum": 30917, "atom2_serNum": 58614, "donAcc_type": "standard", "distance": 2.360, "atom1_id": "///2/1612/OP1", "atom2_id": "///Q/18/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3301, "atom1_serNum": 30933, "atom2_serNum": 31250, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///2/1612/O6", "atom2_id": "///2/1627/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3302, "atom1_serNum": 30934, "atom2_serNum": 31248, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/1612/N1", "atom2_id": "///2/1627/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3303, "atom1_serNum": 30936, "atom2_serNum": 31247, "donAcc_type": "standard", "distance": 2.743, "atom1_id": "///2/1612/N2", "atom2_id": "///2/1627/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3304, "atom1_serNum": 30940, "atom2_serNum": 62415, "donAcc_type": "standard", "distance": 3.458, "atom1_id": "///2/1613/OP1", "atom2_id": "///T/88/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3305, "atom1_serNum": 30941, "atom2_serNum": 58778, "donAcc_type": "standard", "distance": 2.632, "atom1_id": "///2/1613/OP2", "atom2_id": "///Q/39/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3306, "atom1_serNum": 30942, "atom2_serNum": 58813, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///2/1613/O5'", "atom2_id": "///Q/42/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3307, "atom1_serNum": 30947, "atom2_serNum": 58813, "donAcc_type": "standard", "distance": 3.058, "atom1_id": "///2/1613/O3'", "atom2_id": "///Q/42/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3308, "atom1_serNum": 30956, "atom2_serNum": 31230, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///2/1613/O6", "atom2_id": "///2/1626/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3309, "atom1_serNum": 30957, "atom2_serNum": 31228, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/1613/N1", "atom2_id": "///2/1626/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3310, "atom1_serNum": 30959, "atom2_serNum": 31227, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///2/1613/N2", "atom2_id": "///2/1626/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3311, "atom1_serNum": 30979, "atom2_serNum": 31210, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///2/1614/N6", "atom2_id": "///2/1625/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3312, "atom1_serNum": 30980, "atom2_serNum": 31208, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///2/1614/N1", "atom2_id": "///2/1625/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3313, "atom1_serNum": 30986, "atom2_serNum": 58821, "donAcc_type": "standard", "distance": 3.234, "atom1_id": "///2/1615/OP2", "atom2_id": "///Q/43/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3314, "atom1_serNum": 30999, "atom2_serNum": 31190, "donAcc_type": "standard", "distance": 3.524, "atom1_id": "///2/1615/N3", "atom2_id": "///2/1624/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3315, "atom1_serNum": 31001, "atom2_serNum": 31190, "donAcc_type": "questionable", "distance": 3.148, "atom1_id": "///2/1615/O4", "atom2_id": "///2/1624/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3316, "atom1_serNum": 31006, "atom2_serNum": 58824, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///2/1616/OP2", "atom2_id": "///Q/43/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3317, "atom1_serNum": 31014, "atom2_serNum": 31971, "donAcc_type": "acceptable", "distance": 2.985, "atom1_id": "///2/1616/O2'", "atom2_id": "///2/1661/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3318, "atom1_serNum": 31014, "atom2_serNum": 31981, "donAcc_type": "acceptable", "distance": 2.464, "atom1_id": "///2/1616/O2'", "atom2_id": "///2/1661/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3319, "atom1_serNum": 31019, "atom2_serNum": 31107, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///2/1616/N3", "atom2_id": "///2/1620/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3320, "atom1_serNum": 31019, "atom2_serNum": 31190, "donAcc_type": "standard", "distance": 2.521, "atom1_id": "///2/1616/N3", "atom2_id": "///2/1624/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3321, "atom1_serNum": 31021, "atom2_serNum": 58792, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///2/1616/O4", "atom2_id": "///Q/40/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3322, "atom1_serNum": 31034, "atom2_serNum": 31081, "donAcc_type": "acceptable", "distance": 3.297, "atom1_id": "///2/1617/O2'", "atom2_id": "///2/1619/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3323, "atom1_serNum": 31034, "atom2_serNum": 71287, "donAcc_type": "acceptable", "distance": 3.376, "atom1_id": "///2/1617/O2'", "atom2_id": "///e/13/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3324, "atom1_serNum": 31038, "atom2_serNum": 58859, "donAcc_type": "standard", "distance": 3.258, "atom1_id": "///2/1617/N7", "atom2_id": "///Q/47/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3325, "atom1_serNum": 31041, "atom2_serNum": 58823, "donAcc_type": "standard", "distance": 2.315, "atom1_id": "///2/1617/O6", "atom2_id": "///Q/43/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3326, "atom1_serNum": 31041, "atom2_serNum": 58824, "donAcc_type": "standard", "distance": 3.136, "atom1_id": "///2/1617/O6", "atom2_id": "///Q/43/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3327, "atom1_serNum": 31042, "atom2_serNum": 31091, "donAcc_type": "standard", "distance": 2.323, "atom1_id": "///2/1617/N1", "atom2_id": "///2/1620/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3328, "atom1_serNum": 31044, "atom2_serNum": 31091, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///2/1617/N2", "atom2_id": "///2/1620/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3329, "atom1_serNum": 31049, "atom2_serNum": 58860, "donAcc_type": "standard", "distance": 3.846, "atom1_id": "///2/1618/OP2", "atom2_id": "///Q/47/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3330, "atom1_serNum": 31091, "atom2_serNum": 58793, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///2/1620/OP2", "atom2_id": "///Q/40/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3331, "atom1_serNum": 31092, "atom2_serNum": 58793, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///2/1620/O5'", "atom2_id": "///Q/40/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3332, "atom1_serNum": 31099, "atom2_serNum": 31174, "donAcc_type": "acceptable", "distance": 2.295, "atom1_id": "///2/1620/O2'", "atom2_id": "///2/1624/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3333, "atom1_serNum": 31106, "atom2_serNum": 31979, "donAcc_type": "standard", "distance": 3.533, "atom1_id": "///2/1620/N6", "atom2_id": "///2/1661/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3334, "atom1_serNum": 31109, "atom2_serNum": 58793, "donAcc_type": "standard", "distance": 2.616, "atom1_id": "///2/1620/N3", "atom2_id": "///Q/40/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3335, "atom1_serNum": 31113, "atom2_serNum": 31161, "donAcc_type": "acceptable", "distance": 3.169, "atom1_id": "///2/1621/OP2", "atom2_id": "///2/1623/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3336, "atom1_serNum": 31125, "atom2_serNum": 59143, "donAcc_type": "standard", "distance": 3.265, "atom1_id": "///2/1621/O2", "atom2_id": "///Q/81/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3337, "atom1_serNum": 31132, "atom2_serNum": 62673, "donAcc_type": "acceptable", "distance": 2.618, "atom1_id": "///2/1622/OP1", "atom2_id": "///T/120/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3338, "atom1_serNum": 31141, "atom2_serNum": 31152, "donAcc_type": "acceptable", "distance": 2.916, "atom1_id": "///2/1622/O2'", "atom2_id": "///2/1623/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3339, "atom1_serNum": 31153, "atom2_serNum": 62790, "donAcc_type": "questionable", "distance": 2.826, "atom1_id": "///2/1623/OP2", "atom2_id": "///T/133/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3340, "atom1_serNum": 31263, "atom2_serNum": 31279, "donAcc_type": "acceptable", "distance": 2.823, "atom1_id": "///2/1628/O2'", "atom2_id": "///2/1629/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3341, "atom1_serNum": 31283, "atom2_serNum": 62363, "donAcc_type": "acceptable", "distance": 3.060, "atom1_id": "///2/1629/O2'", "atom2_id": "///T/83/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3342, "atom1_serNum": 31287, "atom2_serNum": 62382, "donAcc_type": "questionable", "distance": 2.943, "atom1_id": "///2/1629/O2", "atom2_id": "///T/85/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3343, "atom1_serNum": 31294, "atom2_serNum": 62001, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///2/1630/OP1", "atom2_id": "///T/40/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3344, "atom1_serNum": 31299, "atom2_serNum": 62386, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///2/1630/O4'", "atom2_id": "///T/85/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3345, "atom1_serNum": 31303, "atom2_serNum": 31321, "donAcc_type": "acceptable", "distance": 2.782, "atom1_id": "///2/1630/O2'", "atom2_id": "///2/1631/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3346, "atom1_serNum": 31345, "atom2_serNum": 31360, "donAcc_type": "acceptable", "distance": 3.040, "atom1_id": "///2/1632/O2'", "atom2_id": "///2/1633/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3347, "atom1_serNum": 31404, "atom2_serNum": 31442, "donAcc_type": "standard", "distance": 3.302, "atom1_id": "///2/1635/OP2", "atom2_id": "///2/1636/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3348, "atom1_serNum": 31410, "atom2_serNum": 31487, "donAcc_type": "standard", "distance": 3.403, "atom1_id": "///2/1635/O3'", "atom2_id": "///2/1638/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3349, "atom1_serNum": 31423, "atom2_serNum": 31487, "donAcc_type": "standard", "distance": 2.565, "atom1_id": "///2/1636/OP1", "atom2_id": "///2/1638/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3350, "atom1_serNum": 31567, "atom2_serNum": 31583, "donAcc_type": "acceptable", "distance": 3.194, "atom1_id": "///2/1642/O2'", "atom2_id": "///2/1643/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3351, "atom1_serNum": 31587, "atom2_serNum": 60589, "donAcc_type": "acceptable", "distance": 3.842, "atom1_id": "///2/1643/O2'", "atom2_id": "///R/143/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3352, "atom1_serNum": 31607, "atom2_serNum": 60557, "donAcc_type": "acceptable", "distance": 3.220, "atom1_id": "///2/1644/O2'", "atom2_id": "///R/140/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3353, "atom1_serNum": 31647, "atom2_serNum": 31671, "donAcc_type": "acceptable", "distance": 2.967, "atom1_id": "///2/1646/O2'", "atom2_id": "///2/1647/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3354, "atom1_serNum": 31658, "atom2_serNum": 60550, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///2/1647/OP1", "atom2_id": "///R/138/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3355, "atom1_serNum": 31674, "atom2_serNum": 32283, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///2/1647/N6", "atom2_id": "///2/1676/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3356, "atom1_serNum": 31689, "atom2_serNum": 31704, "donAcc_type": "acceptable", "distance": 2.466, "atom1_id": "///2/1648/O2'", "atom2_id": "///2/1649/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3357, "atom1_serNum": 31689, "atom2_serNum": 32253, "donAcc_type": "acceptable", "distance": 2.601, "atom1_id": "///2/1648/O2'", "atom2_id": "///2/1674/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3358, "atom1_serNum": 31696, "atom2_serNum": 45557, "donAcc_type": "questionable", "distance": 3.230, "atom1_id": "///2/1648/O6", "atom2_id": "///G/53/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3359, "atom1_serNum": 31696, "atom2_serNum": 59591, "donAcc_type": "standard", "distance": 2.397, "atom1_id": "///2/1648/O6", "atom2_id": "///R/16/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3360, "atom1_serNum": 31697, "atom2_serNum": 32261, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///2/1648/N1", "atom2_id": "///2/1675/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3361, "atom1_serNum": 31699, "atom2_serNum": 31719, "donAcc_type": "standard", "distance": 2.621, "atom1_id": "///2/1648/N2", "atom2_id": "///2/1649/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3362, "atom1_serNum": 31699, "atom2_serNum": 32261, "donAcc_type": "standard", "distance": 2.452, "atom1_id": "///2/1648/N2", "atom2_id": "///2/1675/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3363, "atom1_serNum": 31703, "atom2_serNum": 60480, "donAcc_type": "questionable", "distance": 2.632, "atom1_id": "///2/1649/OP1", "atom2_id": "///R/128/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3364, "atom1_serNum": 31704, "atom2_serNum": 32254, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///2/1649/OP2", "atom2_id": "///2/1674/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3365, "atom1_serNum": 31712, "atom2_serNum": 31728, "donAcc_type": "acceptable", "distance": 3.260, "atom1_id": "///2/1649/O2'", "atom2_id": "///2/1650/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3366, "atom1_serNum": 31717, "atom2_serNum": 32273, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///2/1649/N3", "atom2_id": "///2/1675/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3367, "atom1_serNum": 31719, "atom2_serNum": 32273, "donAcc_type": "questionable", "distance": 2.329, "atom1_id": "///2/1649/O4", "atom2_id": "///2/1675/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3368, "atom1_serNum": 31723, "atom2_serNum": 60536, "donAcc_type": "standard", "distance": 3.101, "atom1_id": "///2/1650/OP1", "atom2_id": "///R/137/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3369, "atom1_serNum": 31736, "atom2_serNum": 32256, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///2/1650/N7", "atom2_id": "///2/1674/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3370, "atom1_serNum": 31739, "atom2_serNum": 32257, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///2/1650/N6", "atom2_id": "///2/1674/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3371, "atom1_serNum": 31754, "atom2_serNum": 45775, "donAcc_type": "acceptable", "distance": 3.704, "atom1_id": "///2/1651/O2'", "atom2_id": "///G/80/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3372, "atom1_serNum": 31754, "atom2_serNum": 45802, "donAcc_type": "acceptable", "distance": 2.715, "atom1_id": "///2/1651/O2'", "atom2_id": "///G/83/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3373, "atom1_serNum": 31761, "atom2_serNum": 32233, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///2/1651/N6", "atom2_id": "///2/1673/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3374, "atom1_serNum": 31762, "atom2_serNum": 32231, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///2/1651/N1", "atom2_id": "///2/1673/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3375, "atom1_serNum": 31772, "atom2_serNum": 45775, "donAcc_type": "questionable", "distance": 3.320, "atom1_id": "///2/1652/O4'", "atom2_id": "///G/80/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3376, "atom1_serNum": 31783, "atom2_serNum": 32211, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///2/1652/O6", "atom2_id": "///2/1672/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3377, "atom1_serNum": 31784, "atom2_serNum": 32210, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1652/N1", "atom2_id": "///2/1672/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3378, "atom1_serNum": 31786, "atom2_serNum": 32210, "donAcc_type": "standard", "distance": 3.373, "atom1_id": "///2/1652/N2", "atom2_id": "///2/1672/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3379, "atom1_serNum": 31803, "atom2_serNum": 32191, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///2/1653/O2", "atom2_id": "///2/1671/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3380, "atom1_serNum": 31803, "atom2_serNum": 32193, "donAcc_type": "standard", "distance": 3.257, "atom1_id": "///2/1653/O2", "atom2_id": "///2/1671/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3381, "atom1_serNum": 31804, "atom2_serNum": 32190, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///2/1653/N3", "atom2_id": "///2/1671/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3382, "atom1_serNum": 31810, "atom2_serNum": 63579, "donAcc_type": "acceptable", "distance": 2.170, "atom1_id": "///2/1654/OP1", "atom2_id": "///U/90/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3383, "atom1_serNum": 31826, "atom2_serNum": 32170, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///2/1654/O6", "atom2_id": "///2/1670/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3384, "atom1_serNum": 31827, "atom2_serNum": 32168, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/1654/N1", "atom2_id": "///2/1670/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3385, "atom1_serNum": 31829, "atom2_serNum": 32167, "donAcc_type": "standard", "distance": 2.737, "atom1_id": "///2/1654/N2", "atom2_id": "///2/1670/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3386, "atom1_serNum": 31833, "atom2_serNum": 63590, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///2/1655/OP1", "atom2_id": "///U/92/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3387, "atom1_serNum": 31834, "atom2_serNum": 63586, "donAcc_type": "acceptable", "distance": 3.550, "atom1_id": "///2/1655/OP2", "atom2_id": "///U/91/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3388, "atom1_serNum": 31846, "atom2_serNum": 32150, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///2/1655/O2", "atom2_id": "///2/1669/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3389, "atom1_serNum": 31847, "atom2_serNum": 32148, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///2/1655/N3", "atom2_id": "///2/1669/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3390, "atom1_serNum": 31849, "atom2_serNum": 32147, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///2/1655/N4", "atom2_id": "///2/1669/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3391, "atom1_serNum": 31869, "atom2_serNum": 32125, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///2/1656/O6", "atom2_id": "///2/1668/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3392, "atom1_serNum": 31869, "atom2_serNum": 32127, "donAcc_type": "questionable", "distance": 2.449, "atom1_id": "///2/1656/O6", "atom2_id": "///2/1668/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3393, "atom1_serNum": 31872, "atom2_serNum": 32124, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///2/1656/N2", "atom2_id": "///2/1668/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3394, "atom1_serNum": 31885, "atom2_serNum": 71443, "donAcc_type": "acceptable", "distance": 3.234, "atom1_id": "///2/1657/O2'", "atom2_id": "///e/33/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3395, "atom1_serNum": 31892, "atom2_serNum": 32105, "donAcc_type": "standard", "distance": 2.835, "atom1_id": "///2/1657/O6", "atom2_id": "///2/1667/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3396, "atom1_serNum": 31893, "atom2_serNum": 32104, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///2/1657/N1", "atom2_id": "///2/1667/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3397, "atom1_serNum": 31895, "atom2_serNum": 32104, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///2/1657/N2", "atom2_id": "///2/1667/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3398, "atom1_serNum": 31900, "atom2_serNum": 31958, "donAcc_type": "standard", "distance": 2.344, "atom1_id": "///2/1658/OP2", "atom2_id": "///2/1660/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3399, "atom1_serNum": 31915, "atom2_serNum": 32087, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/1658/O6", "atom2_id": "///2/1666/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3400, "atom1_serNum": 31916, "atom2_serNum": 32085, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/1658/N1", "atom2_id": "///2/1666/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3401, "atom1_serNum": 31918, "atom2_serNum": 32084, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///2/1658/N2", "atom2_id": "///2/1666/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3402, "atom1_serNum": 31923, "atom2_serNum": 31956, "donAcc_type": "questionable", "distance": 2.960, "atom1_id": "///2/1659/OP2", "atom2_id": "///2/1660/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3403, "atom1_serNum": 31935, "atom2_serNum": 32042, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///2/1659/O2", "atom2_id": "///2/1664/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3404, "atom1_serNum": 31936, "atom2_serNum": 32039, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///2/1659/N3", "atom2_id": "///2/1664/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3405, "atom1_serNum": 31938, "atom2_serNum": 32027, "donAcc_type": "questionable", "distance": 2.881, "atom1_id": "///2/1659/O4", "atom2_id": "///2/1664/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3406, "atom1_serNum": 31942, "atom2_serNum": 71311, "donAcc_type": "standard", "distance": 3.001, "atom1_id": "///2/1660/OP1", "atom2_id": "///e/16/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3407, "atom1_serNum": 31943, "atom2_serNum": 71433, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///2/1660/OP2", "atom2_id": "///e/32/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3408, "atom1_serNum": 31951, "atom2_serNum": 31985, "donAcc_type": "acceptable", "distance": 2.876, "atom1_id": "///2/1660/O2'", "atom2_id": "///2/1662/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3409, "atom1_serNum": 31955, "atom2_serNum": 71434, "donAcc_type": "standard", "distance": 2.401, "atom1_id": "///2/1660/O2", "atom2_id": "///e/32/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3410, "atom1_serNum": 32000, "atom2_serNum": 32020, "donAcc_type": "standard", "distance": 3.202, "atom1_id": "///2/1662/O4", "atom2_id": "///2/1663/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3411, "atom1_serNum": 32035, "atom2_serNum": 32050, "donAcc_type": "acceptable", "distance": 2.496, "atom1_id": "///2/1664/O2'", "atom2_id": "///2/1665/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3412, "atom1_serNum": 32049, "atom2_serNum": 63589, "donAcc_type": "standard", "distance": 3.828, "atom1_id": "///2/1665/OP2", "atom2_id": "///U/91/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3413, "atom1_serNum": 32111, "atom2_serNum": 60517, "donAcc_type": "standard", "distance": 2.495, "atom1_id": "///2/1668/OP1", "atom2_id": "///R/133/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3414, "atom1_serNum": 32112, "atom2_serNum": 60496, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///2/1668/OP2", "atom2_id": "///R/130/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3415, "atom1_serNum": 32112, "atom2_serNum": 60579, "donAcc_type": "acceptable", "distance": 2.300, "atom1_id": "///2/1668/OP2", "atom2_id": "///R/141/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3416, "atom1_serNum": 32131, "atom2_serNum": 64479, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///2/1669/OP1", "atom2_id": "///V/79/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3417, "atom1_serNum": 32132, "atom2_serNum": 60496, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///2/1669/OP2", "atom2_id": "///R/130/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3418, "atom1_serNum": 32154, "atom2_serNum": 60487, "donAcc_type": "acceptable", "distance": 2.870, "atom1_id": "///2/1670/OP1", "atom2_id": "///R/129/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3419, "atom1_serNum": 32155, "atom2_serNum": 60488, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///2/1670/OP2", "atom2_id": "///R/130/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3420, "atom1_serNum": 32217, "atom2_serNum": 60069, "donAcc_type": "standard", "distance": 3.362, "atom1_id": "///2/1673/OP1", "atom2_id": "///R/79/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3421, "atom1_serNum": 32218, "atom2_serNum": 59600, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///2/1673/OP2", "atom2_id": "///R/17/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3422, "atom1_serNum": 32226, "atom2_serNum": 45806, "donAcc_type": "acceptable", "distance": 2.385, "atom1_id": "///2/1673/O2'", "atom2_id": "///G/84/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3423, "atom1_serNum": 32237, "atom2_serNum": 45547, "donAcc_type": "standard", "distance": 2.457, "atom1_id": "///2/1674/OP1", "atom2_id": "///G/51/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3424, "atom1_serNum": 32250, "atom2_serNum": 59600, "donAcc_type": "standard", "distance": 3.484, "atom1_id": "///2/1674/N7", "atom2_id": "///R/17/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3425, "atom1_serNum": 32257, "atom2_serNum": 32276, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///2/1674/N3", "atom2_id": "///2/1675/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3426, "atom1_serNum": 32260, "atom2_serNum": 45824, "donAcc_type": "standard", "distance": 2.483, "atom1_id": "///2/1675/OP1", "atom2_id": "///G/86/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3427, "atom1_serNum": 32269, "atom2_serNum": 32287, "donAcc_type": "acceptable", "distance": 3.454, "atom1_id": "///2/1675/O2'", "atom2_id": "///2/1676/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3428, "atom1_serNum": 32289, "atom2_serNum": 45646, "donAcc_type": "standard", "distance": 2.430, "atom1_id": "///2/1676/O3'", "atom2_id": "///G/63/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3429, "atom1_serNum": 32291, "atom2_serNum": 32304, "donAcc_type": "acceptable", "distance": 2.546, "atom1_id": "///2/1676/O2'", "atom2_id": "///2/1677/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3430, "atom1_serNum": 32302, "atom2_serNum": 45708, "donAcc_type": "standard", "distance": 3.768, "atom1_id": "///2/1677/OP1", "atom2_id": "///G/71/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3431, "atom1_serNum": 32303, "atom2_serNum": 45646, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///2/1677/OP2", "atom2_id": "///G/63/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3432, "atom1_serNum": 32322, "atom2_serNum": 46308, "donAcc_type": "standard", "distance": 3.949, "atom1_id": "///2/1678/OP1", "atom2_id": "///G/148/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3433, "atom1_serNum": 32323, "atom2_serNum": 45646, "donAcc_type": "standard", "distance": 2.532, "atom1_id": "///2/1678/OP2", "atom2_id": "///G/63/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3434, "atom1_serNum": 32344, "atom2_serNum": 45615, "donAcc_type": "standard", "distance": 2.685, "atom1_id": "///2/1679/OP1", "atom2_id": "///G/60/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3435, "atom1_serNum": 32375, "atom2_serNum": 70785, "donAcc_type": "acceptable", "distance": 3.209, "atom1_id": "///2/1680/O2'", "atom2_id": "///d/20/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3436, "atom1_serNum": 32375, "atom2_serNum": 70818, "donAcc_type": "acceptable", "distance": 3.578, "atom1_id": "///2/1680/O2'", "atom2_id": "///d/25/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3437, "atom1_serNum": 32385, "atom2_serNum": 70809, "donAcc_type": "standard", "distance": 3.303, "atom1_id": "///2/1680/N2", "atom2_id": "///d/24/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3438, "atom1_serNum": 32398, "atom2_serNum": 70803, "donAcc_type": "acceptable", "distance": 3.002, "atom1_id": "///2/1681/O2'", "atom2_id": "///d/23/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3439, "atom1_serNum": 32402, "atom2_serNum": 32445, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///2/1681/O2", "atom2_id": "///2/1683/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3440, "atom1_serNum": 32422, "atom2_serNum": 32465, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///2/1682/O2", "atom2_id": "///2/1684/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3441, "atom1_serNum": 32552, "atom2_serNum": 40162, "donAcc_type": "standard", "distance": 3.152, "atom1_id": "///2/1689/OP1", "atom2_id": "///D/117/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3442, "atom1_serNum": 32601, "atom2_serNum": 69869, "donAcc_type": "acceptable", "distance": 3.408, "atom1_id": "///2/1691/O2'", "atom2_id": "///b/88/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3443, "atom1_serNum": 32612, "atom2_serNum": 69870, "donAcc_type": "standard", "distance": 3.528, "atom1_id": "///2/1692/OP1", "atom2_id": "///b/89/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3444, "atom1_serNum": 32617, "atom2_serNum": 69852, "donAcc_type": "standard", "distance": 3.384, "atom1_id": "///2/1692/O4'", "atom2_id": "///b/86/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3445, "atom1_serNum": 32628, "atom2_serNum": 32648, "donAcc_type": "questionable", "distance": 2.826, "atom1_id": "///2/1692/O4", "atom2_id": "///2/1693/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3446, "atom1_serNum": 32632, "atom2_serNum": 69904, "donAcc_type": "standard", "distance": 3.515, "atom1_id": "///2/1693/OP1", "atom2_id": "///b/92/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3447, "atom1_serNum": 32637, "atom2_serNum": 35478, "donAcc_type": "questionable", "distance": 3.039, "atom1_id": "///2/1693/O4'", "atom2_id": "///2/1835/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3448, "atom1_serNum": 32641, "atom2_serNum": 32660, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///2/1693/O2'", "atom2_id": "///2/1694/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3449, "atom1_serNum": 32641, "atom2_serNum": 35456, "donAcc_type": "acceptable", "distance": 3.090, "atom1_id": "///2/1693/O2'", "atom2_id": "///2/1834/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3450, "atom1_serNum": 32641, "atom2_serNum": 35479, "donAcc_type": "acceptable", "distance": 3.668, "atom1_id": "///2/1693/O2'", "atom2_id": "///2/1835/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3451, "atom1_serNum": 32651, "atom2_serNum": 35461, "donAcc_type": "standard", "distance": 3.026, "atom1_id": "///2/1693/N2", "atom2_id": "///2/1834/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3452, "atom1_serNum": 32664, "atom2_serNum": 35445, "donAcc_type": "acceptable", "distance": 2.505, "atom1_id": "///2/1694/O2'", "atom2_id": "///2/1833/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3453, "atom1_serNum": 32684, "atom2_serNum": 35449, "donAcc_type": "acceptable", "distance": 3.409, "atom1_id": "///2/1695/O2'", "atom2_id": "///2/1833/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3454, "atom1_serNum": 32692, "atom2_serNum": 35423, "donAcc_type": "acceptable", "distance": 3.179, "atom1_id": "///2/1695/N1", "atom2_id": "///2/1832/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3455, "atom1_serNum": 32702, "atom2_serNum": 32840, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///2/1696/O4'", "atom2_id": "///2/1702/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3456, "atom1_serNum": 32704, "atom2_serNum": 32830, "donAcc_type": "acceptable", "distance": 3.110, "atom1_id": "///2/1696/O3'", "atom2_id": "///2/1702/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3457, "atom1_serNum": 32706, "atom2_serNum": 32830, "donAcc_type": "acceptable", "distance": 2.426, "atom1_id": "///2/1696/O2'", "atom2_id": "///2/1702/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3458, "atom1_serNum": 32710, "atom2_serNum": 32768, "donAcc_type": "acceptable", "distance": 3.129, "atom1_id": "///2/1696/O2", "atom2_id": "///2/1699/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3459, "atom1_serNum": 32748, "atom2_serNum": 32759, "donAcc_type": "acceptable", "distance": 2.776, "atom1_id": "///2/1698/O2'", "atom2_id": "///2/1699/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3460, "atom1_serNum": 32776, "atom2_serNum": 40145, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///2/1699/N1", "atom2_id": "///D/115/NE2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3461, "atom1_serNum": 32797, "atom2_serNum": 35516, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///2/1700/N4", "atom2_id": "///2/1836/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3462, "atom1_serNum": 32837, "atom2_serNum": 35452, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///2/1702/O6", "atom2_id": "///2/1833/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3463, "atom1_serNum": 32837, "atom2_serNum": 35517, "donAcc_type": "standard", "distance": 3.170, "atom1_id": "///2/1702/O6", "atom2_id": "///2/1836/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3464, "atom1_serNum": 32837, "atom2_serNum": 35519, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///2/1702/O6", "atom2_id": "///2/1836/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3465, "atom1_serNum": 32838, "atom2_serNum": 35450, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///2/1702/N1", "atom2_id": "///2/1833/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3466, "atom1_serNum": 32840, "atom2_serNum": 35449, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///2/1702/N2", "atom2_id": "///2/1833/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3467, "atom1_serNum": 32857, "atom2_serNum": 35431, "donAcc_type": "questionable", "distance": 2.989, "atom1_id": "///2/1703/O2", "atom2_id": "///2/1832/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3468, "atom1_serNum": 32858, "atom2_serNum": 35430, "donAcc_type": "standard", "distance": 3.981, "atom1_id": "///2/1703/N3", "atom2_id": "///2/1832/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3469, "atom1_serNum": 32873, "atom2_serNum": 35409, "donAcc_type": "acceptable", "distance": 3.361, "atom1_id": "///2/1704/O2'", "atom2_id": "///2/1831/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3470, "atom1_serNum": 32877, "atom2_serNum": 35408, "donAcc_type": "standard", "distance": 2.617, "atom1_id": "///2/1704/O2", "atom2_id": "///2/1831/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3471, "atom1_serNum": 32893, "atom2_serNum": 32909, "donAcc_type": "acceptable", "distance": 3.183, "atom1_id": "///2/1705/O2'", "atom2_id": "///2/1706/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3472, "atom1_serNum": 32893, "atom2_serNum": 75090, "donAcc_type": "acceptable", "distance": 2.807, "atom1_id": "///2/1705/O2'", "atom2_id": "///n/1/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3473, "atom1_serNum": 32897, "atom2_serNum": 35368, "donAcc_type": "standard", "distance": 3.600, "atom1_id": "///2/1705/O2", "atom2_id": "///2/1829/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3474, "atom1_serNum": 32897, "atom2_serNum": 35831, "donAcc_type": "acceptable", "distance": 2.412, "atom1_id": "///2/1705/O2", "atom2_id": "///2/1851/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3475, "atom1_serNum": 32898, "atom2_serNum": 35366, "donAcc_type": "standard", "distance": 3.364, "atom1_id": "///2/1705/N3", "atom2_id": "///2/1829/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3476, "atom1_serNum": 32900, "atom2_serNum": 35365, "donAcc_type": "standard", "distance": 3.310, "atom1_id": "///2/1705/N4", "atom2_id": "///2/1829/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3477, "atom1_serNum": 32911, "atom2_serNum": 75175, "donAcc_type": "standard", "distance": 3.920, "atom1_id": "///2/1706/O3'", "atom2_id": "///n/9/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3478, "atom1_serNum": 32913, "atom2_serNum": 35807, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///2/1706/O2'", "atom2_id": "///2/1850/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3479, "atom1_serNum": 32913, "atom2_serNum": 35809, "donAcc_type": "acceptable", "distance": 3.080, "atom1_id": "///2/1706/O2'", "atom2_id": "///2/1850/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3480, "atom1_serNum": 32920, "atom2_serNum": 35345, "donAcc_type": "standard", "distance": 3.194, "atom1_id": "///2/1706/O6", "atom2_id": "///2/1828/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3481, "atom1_serNum": 32923, "atom2_serNum": 35343, "donAcc_type": "standard", "distance": 3.752, "atom1_id": "///2/1706/N2", "atom2_id": "///2/1828/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3482, "atom1_serNum": 32923, "atom2_serNum": 35796, "donAcc_type": "questionable", "distance": 2.996, "atom1_id": "///2/1706/N2", "atom2_id": "///2/1849/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3483, "atom1_serNum": 32924, "atom2_serNum": 35809, "donAcc_type": "acceptable", "distance": 2.852, "atom1_id": "///2/1706/N3", "atom2_id": "///2/1850/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3484, "atom1_serNum": 32940, "atom2_serNum": 35796, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///2/1707/O2", "atom2_id": "///2/1849/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3485, "atom1_serNum": 32943, "atom2_serNum": 35325, "donAcc_type": "questionable", "distance": 3.052, "atom1_id": "///2/1707/O4", "atom2_id": "///2/1827/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3486, "atom1_serNum": 32960, "atom2_serNum": 35305, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///2/1708/O2", "atom2_id": "///2/1826/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3487, "atom1_serNum": 32961, "atom2_serNum": 35303, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/1708/N3", "atom2_id": "///2/1826/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3488, "atom1_serNum": 32963, "atom2_serNum": 35302, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///2/1708/N4", "atom2_id": "///2/1826/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3489, "atom1_serNum": 33004, "atom2_serNum": 35236, "donAcc_type": "standard", "distance": 3.342, "atom1_id": "///2/1710/N3", "atom2_id": "///2/1823/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3490, "atom1_serNum": 33006, "atom2_serNum": 35236, "donAcc_type": "questionable", "distance": 3.000, "atom1_id": "///2/1710/N4", "atom2_id": "///2/1823/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3491, "atom1_serNum": 33019, "atom2_serNum": 33035, "donAcc_type": "acceptable", "distance": 3.104, "atom1_id": "///2/1711/O2'", "atom2_id": "///2/1712/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3492, "atom1_serNum": 33024, "atom2_serNum": 35215, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///2/1711/N3", "atom2_id": "///2/1822/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3493, "atom1_serNum": 33026, "atom2_serNum": 35214, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///2/1711/O4", "atom2_id": "///2/1822/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3494, "atom1_serNum": 33026, "atom2_serNum": 35236, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///2/1711/O4", "atom2_id": "///2/1823/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3495, "atom1_serNum": 33046, "atom2_serNum": 35194, "donAcc_type": "standard", "distance": 3.010, "atom1_id": "///2/1712/N6", "atom2_id": "///2/1821/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3496, "atom1_serNum": 33047, "atom2_serNum": 35192, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///2/1712/N1", "atom2_id": "///2/1821/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3497, "atom1_serNum": 33061, "atom2_serNum": 33077, "donAcc_type": "acceptable", "distance": 2.662, "atom1_id": "///2/1713/O2'", "atom2_id": "///2/1714/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3498, "atom1_serNum": 33065, "atom2_serNum": 35174, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///2/1713/O2", "atom2_id": "///2/1820/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3499, "atom1_serNum": 33066, "atom2_serNum": 35172, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1713/N3", "atom2_id": "///2/1820/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3500, "atom1_serNum": 33068, "atom2_serNum": 35171, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///2/1713/N4", "atom2_id": "///2/1820/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3501, "atom1_serNum": 33085, "atom2_serNum": 35174, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///2/1714/O2", "atom2_id": "///2/1820/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3502, "atom1_serNum": 33088, "atom2_serNum": 35150, "donAcc_type": "questionable", "distance": 3.320, "atom1_id": "///2/1714/O4", "atom2_id": "///2/1819/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3503, "atom1_serNum": 33108, "atom2_serNum": 35128, "donAcc_type": "standard", "distance": 3.277, "atom1_id": "///2/1715/N6", "atom2_id": "///2/1818/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3504, "atom1_serNum": 33127, "atom2_serNum": 35107, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///2/1716/O2", "atom2_id": "///2/1817/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3505, "atom1_serNum": 33128, "atom2_serNum": 35105, "donAcc_type": "standard", "distance": 2.631, "atom1_id": "///2/1716/N3", "atom2_id": "///2/1817/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3506, "atom1_serNum": 33130, "atom2_serNum": 35104, "donAcc_type": "standard", "distance": 2.399, "atom1_id": "///2/1716/N4", "atom2_id": "///2/1817/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3507, "atom1_serNum": 33147, "atom2_serNum": 35084, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///2/1717/O2", "atom2_id": "///2/1816/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3508, "atom1_serNum": 33148, "atom2_serNum": 35082, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/1717/N3", "atom2_id": "///2/1816/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3509, "atom1_serNum": 33150, "atom2_serNum": 35081, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///2/1717/N4", "atom2_id": "///2/1816/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3510, "atom1_serNum": 33163, "atom2_serNum": 35059, "donAcc_type": "acceptable", "distance": 2.870, "atom1_id": "///2/1718/O2'", "atom2_id": "///2/1815/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3511, "atom1_serNum": 33173, "atom2_serNum": 35056, "donAcc_type": "standard", "distance": 2.424, "atom1_id": "///2/1718/N2", "atom2_id": "///2/1815/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3512, "atom1_serNum": 33177, "atom2_serNum": 75328, "donAcc_type": "standard", "distance": 3.349, "atom1_id": "///2/1719/OP1", "atom2_id": "///n/25/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3513, "atom1_serNum": 33193, "atom2_serNum": 35029, "donAcc_type": "acceptable", "distance": 2.389, "atom1_id": "///2/1719/N6", "atom2_id": "///2/1814/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3514, "atom1_serNum": 33213, "atom2_serNum": 35015, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///2/1720/N3", "atom2_id": "///2/1813/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3515, "atom1_serNum": 33215, "atom2_serNum": 35014, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///2/1720/O4", "atom2_id": "///2/1813/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3516, "atom1_serNum": 33248, "atom2_serNum": 33267, "donAcc_type": "acceptable", "distance": 3.104, "atom1_id": "///2/1722/O2'", "atom2_id": "///2/1723/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3517, "atom1_serNum": 33258, "atom2_serNum": 34991, "donAcc_type": "standard", "distance": 2.390, "atom1_id": "///2/1722/N2", "atom2_id": "///2/1812/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3518, "atom1_serNum": 33278, "atom2_serNum": 34974, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///2/1723/O6", "atom2_id": "///2/1811/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3519, "atom1_serNum": 33279, "atom2_serNum": 34972, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///2/1723/N1", "atom2_id": "///2/1811/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3520, "atom1_serNum": 33281, "atom2_serNum": 34971, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///2/1723/N2", "atom2_id": "///2/1811/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3521, "atom1_serNum": 33301, "atom2_serNum": 34954, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///2/1724/N6", "atom2_id": "///2/1810/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3522, "atom1_serNum": 33302, "atom2_serNum": 34952, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///2/1724/N1", "atom2_id": "///2/1810/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3523, "atom1_serNum": 33321, "atom2_serNum": 34933, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///2/1725/N3", "atom2_id": "///2/1809/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3524, "atom1_serNum": 33323, "atom2_serNum": 34932, "donAcc_type": "standard", "distance": 2.999, "atom1_id": "///2/1725/O4", "atom2_id": "///2/1809/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3525, "atom1_serNum": 33343, "atom2_serNum": 34910, "donAcc_type": "standard", "distance": 3.094, "atom1_id": "///2/1726/O6", "atom2_id": "///2/1808/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3526, "atom1_serNum": 33344, "atom2_serNum": 34909, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///2/1726/N1", "atom2_id": "///2/1808/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3527, "atom1_serNum": 33366, "atom2_serNum": 34892, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///2/1727/O6", "atom2_id": "///2/1807/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3528, "atom1_serNum": 33366, "atom2_serNum": 34910, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///2/1727/O6", "atom2_id": "///2/1808/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3529, "atom1_serNum": 33367, "atom2_serNum": 34890, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///2/1727/N1", "atom2_id": "///2/1807/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3530, "atom1_serNum": 33369, "atom2_serNum": 34889, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///2/1727/N2", "atom2_id": "///2/1807/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3531, "atom1_serNum": 33382, "atom2_serNum": 33398, "donAcc_type": "acceptable", "distance": 2.997, "atom1_id": "///2/1728/O2'", "atom2_id": "///2/1729/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3532, "atom1_serNum": 33386, "atom2_serNum": 34889, "donAcc_type": "questionable", "distance": 3.176, "atom1_id": "///2/1728/O2", "atom2_id": "///2/1807/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3533, "atom1_serNum": 33387, "atom2_serNum": 34890, "donAcc_type": "standard", "distance": 3.724, "atom1_id": "///2/1728/N3", "atom2_id": "///2/1807/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3534, "atom1_serNum": 33402, "atom2_serNum": 33418, "donAcc_type": "acceptable", "distance": 3.241, "atom1_id": "///2/1729/O2'", "atom2_id": "///2/1730/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3535, "atom1_serNum": 33406, "atom2_serNum": 34850, "donAcc_type": "standard", "distance": 3.148, "atom1_id": "///2/1729/O2", "atom2_id": "///2/1805/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3536, "atom1_serNum": 33407, "atom2_serNum": 34871, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///2/1729/N3", "atom2_id": "///2/1806/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3537, "atom1_serNum": 33409, "atom2_serNum": 34870, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///2/1729/O4", "atom2_id": "///2/1806/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3538, "atom1_serNum": 33429, "atom2_serNum": 34825, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///2/1730/O4", "atom2_id": "///2/1804/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3539, "atom1_serNum": 33449, "atom2_serNum": 34807, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///2/1731/N6", "atom2_id": "///2/1803/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3540, "atom1_serNum": 33450, "atom2_serNum": 34805, "donAcc_type": "standard", "distance": 2.792, "atom1_id": "///2/1731/N1", "atom2_id": "///2/1803/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3541, "atom1_serNum": 33471, "atom2_serNum": 34787, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///2/1732/O6", "atom2_id": "///2/1802/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3542, "atom1_serNum": 33472, "atom2_serNum": 34785, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///2/1732/N1", "atom2_id": "///2/1802/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3543, "atom1_serNum": 33474, "atom2_serNum": 34784, "donAcc_type": "standard", "distance": 2.772, "atom1_id": "///2/1732/N2", "atom2_id": "///2/1802/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3544, "atom1_serNum": 33492, "atom2_serNum": 34766, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///2/1733/N3", "atom2_id": "///2/1801/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3545, "atom1_serNum": 33494, "atom2_serNum": 34765, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///2/1733/O4", "atom2_id": "///2/1801/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3546, "atom1_serNum": 33507, "atom2_serNum": 34743, "donAcc_type": "acceptable", "distance": 2.692, "atom1_id": "///2/1734/O2'", "atom2_id": "///2/1800/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3547, "atom1_serNum": 33517, "atom2_serNum": 34740, "donAcc_type": "standard", "distance": 2.970, "atom1_id": "///2/1734/N2", "atom2_id": "///2/1800/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3548, "atom1_serNum": 33518, "atom2_serNum": 34743, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///2/1734/N3", "atom2_id": "///2/1800/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3549, "atom1_serNum": 33534, "atom2_serNum": 34723, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///2/1735/N7", "atom2_id": "///2/1799/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3550, "atom1_serNum": 33537, "atom2_serNum": 34713, "donAcc_type": "acceptable", "distance": 3.225, "atom1_id": "///2/1735/N6", "atom2_id": "///2/1799/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3551, "atom1_serNum": 33550, "atom2_serNum": 47496, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///2/1736/O3'", "atom2_id": "///H/94/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3552, "atom1_serNum": 33559, "atom2_serNum": 34700, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///2/1736/O6", "atom2_id": "///2/1798/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3553, "atom1_serNum": 33560, "atom2_serNum": 34698, "donAcc_type": "standard", "distance": 3.347, "atom1_id": "///2/1736/N1", "atom2_id": "///2/1798/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3554, "atom1_serNum": 33562, "atom2_serNum": 34697, "donAcc_type": "standard", "distance": 3.613, "atom1_id": "///2/1736/N2", "atom2_id": "///2/1798/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3555, "atom1_serNum": 33566, "atom2_serNum": 47496, "donAcc_type": "standard", "distance": 3.146, "atom1_id": "///2/1737/OP1", "atom2_id": "///H/94/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3556, "atom1_serNum": 33573, "atom2_serNum": 47476, "donAcc_type": "standard", "distance": 3.832, "atom1_id": "///2/1737/O3'", "atom2_id": "///H/92/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3557, "atom1_serNum": 33582, "atom2_serNum": 34680, "donAcc_type": "questionable", "distance": 2.808, "atom1_id": "///2/1737/O6", "atom2_id": "///2/1797/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3558, "atom1_serNum": 33583, "atom2_serNum": 34678, "donAcc_type": "questionable", "distance": 3.329, "atom1_id": "///2/1737/N1", "atom2_id": "///2/1797/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3559, "atom1_serNum": 33585, "atom2_serNum": 34677, "donAcc_type": "standard", "distance": 3.598, "atom1_id": "///2/1737/N2", "atom2_id": "///2/1797/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3560, "atom1_serNum": 33602, "atom2_serNum": 34660, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///2/1738/O2", "atom2_id": "///2/1796/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3561, "atom1_serNum": 33603, "atom2_serNum": 34658, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1738/N3", "atom2_id": "///2/1796/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3562, "atom1_serNum": 33605, "atom2_serNum": 34657, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///2/1738/N4", "atom2_id": "///2/1796/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3563, "atom1_serNum": 33622, "atom2_serNum": 34637, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///2/1739/O2", "atom2_id": "///2/1795/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3564, "atom1_serNum": 33623, "atom2_serNum": 34635, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///2/1739/N3", "atom2_id": "///2/1795/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3565, "atom1_serNum": 33625, "atom2_serNum": 34634, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///2/1739/N4", "atom2_id": "///2/1795/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3566, "atom1_serNum": 33629, "atom2_serNum": 50516, "donAcc_type": "acceptable", "distance": 2.730, "atom1_id": "///2/1740/OP1", "atom2_id": "///J/44/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3567, "atom1_serNum": 33643, "atom2_serNum": 34614, "donAcc_type": "standard", "distance": 3.538, "atom1_id": "///2/1740/N3", "atom2_id": "///2/1794/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3568, "atom1_serNum": 33649, "atom2_serNum": 50500, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///2/1741/OP1", "atom2_id": "///J/42/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3569, "atom1_serNum": 33656, "atom2_serNum": 50643, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///2/1741/O3'", "atom2_id": "///J/59/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3570, "atom1_serNum": 33663, "atom2_serNum": 34593, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///2/1741/N3", "atom2_id": "///2/1793/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3571, "atom1_serNum": 33665, "atom2_serNum": 34592, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///2/1741/O4", "atom2_id": "///2/1793/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3572, "atom1_serNum": 33665, "atom2_serNum": 34614, "donAcc_type": "standard", "distance": 3.385, "atom1_id": "///2/1741/O4", "atom2_id": "///2/1794/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3573, "atom1_serNum": 33669, "atom2_serNum": 50643, "donAcc_type": "standard", "distance": 3.067, "atom1_id": "///2/1742/OP1", "atom2_id": "///J/59/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3574, "atom1_serNum": 33670, "atom2_serNum": 50500, "donAcc_type": "standard", "distance": 3.499, "atom1_id": "///2/1742/OP2", "atom2_id": "///J/42/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3575, "atom1_serNum": 33682, "atom2_serNum": 34572, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///2/1742/O2", "atom2_id": "///2/1792/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3576, "atom1_serNum": 33683, "atom2_serNum": 34570, "donAcc_type": "standard", "distance": 3.132, "atom1_id": "///2/1742/N3", "atom2_id": "///2/1792/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3577, "atom1_serNum": 33683, "atom2_serNum": 34572, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///2/1742/N3", "atom2_id": "///2/1792/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3578, "atom1_serNum": 33685, "atom2_serNum": 34569, "donAcc_type": "standard", "distance": 3.067, "atom1_id": "///2/1742/N4", "atom2_id": "///2/1792/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3579, "atom1_serNum": 33708, "atom2_serNum": 34544, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///2/1743/N2", "atom2_id": "///2/1791/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3580, "atom1_serNum": 33708, "atom2_serNum": 34547, "donAcc_type": "questionable", "distance": 2.444, "atom1_id": "///2/1743/N2", "atom2_id": "///2/1791/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3581, "atom1_serNum": 33709, "atom2_serNum": 34547, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///2/1743/N3", "atom2_id": "///2/1791/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3582, "atom1_serNum": 33717, "atom2_serNum": 34525, "donAcc_type": "standard", "distance": 2.691, "atom1_id": "///2/1744/O4'", "atom2_id": "///2/1790/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3583, "atom1_serNum": 33731, "atom2_serNum": 34522, "donAcc_type": "standard", "distance": 3.141, "atom1_id": "///2/1744/N2", "atom2_id": "///2/1790/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3584, "atom1_serNum": 33748, "atom2_serNum": 34505, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/1745/N7", "atom2_id": "///2/1789/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3585, "atom1_serNum": 33751, "atom2_serNum": 34495, "donAcc_type": "acceptable", "distance": 3.103, "atom1_id": "///2/1745/N6", "atom2_id": "///2/1789/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3586, "atom1_serNum": 33751, "atom2_serNum": 34506, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///2/1745/N6", "atom2_id": "///2/1789/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3587, "atom1_serNum": 33754, "atom2_serNum": 47259, "donAcc_type": "standard", "distance": 3.117, "atom1_id": "///2/1745/N3", "atom2_id": "///H/65/NE2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3588, "atom1_serNum": 33762, "atom2_serNum": 47259, "donAcc_type": "standard", "distance": 3.280, "atom1_id": "///2/1746/O4'", "atom2_id": "///H/65/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3589, "atom1_serNum": 33766, "atom2_serNum": 33782, "donAcc_type": "acceptable", "distance": 3.182, "atom1_id": "///2/1746/O2'", "atom2_id": "///2/1747/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3590, "atom1_serNum": 33771, "atom2_serNum": 34481, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///2/1746/N3", "atom2_id": "///2/1788/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3591, "atom1_serNum": 33773, "atom2_serNum": 34480, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///2/1746/O4", "atom2_id": "///2/1788/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3592, "atom1_serNum": 33790, "atom2_serNum": 34460, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///2/1747/O2", "atom2_id": "///2/1787/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3593, "atom1_serNum": 33791, "atom2_serNum": 34458, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///2/1747/N3", "atom2_id": "///2/1787/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3594, "atom1_serNum": 33793, "atom2_serNum": 34457, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///2/1747/N4", "atom2_id": "///2/1787/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3595, "atom1_serNum": 33813, "atom2_serNum": 34434, "donAcc_type": "questionable", "distance": 2.336, "atom1_id": "///2/1748/O6", "atom2_id": "///2/1786/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3596, "atom1_serNum": 33813, "atom2_serNum": 34435, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///2/1748/O6", "atom2_id": "///2/1786/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3597, "atom1_serNum": 33814, "atom2_serNum": 34434, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///2/1748/N1", "atom2_id": "///2/1786/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3598, "atom1_serNum": 33836, "atom2_serNum": 34417, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///2/1749/O6", "atom2_id": "///2/1785/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3599, "atom1_serNum": 33837, "atom2_serNum": 34415, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///2/1749/N1", "atom2_id": "///2/1785/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3600, "atom1_serNum": 33839, "atom2_serNum": 34414, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///2/1749/N2", "atom2_id": "///2/1785/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3601, "atom1_serNum": 33856, "atom2_serNum": 34397, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///2/1750/O2", "atom2_id": "///2/1784/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3602, "atom1_serNum": 33856, "atom2_serNum": 34414, "donAcc_type": "questionable", "distance": 3.003, "atom1_id": "///2/1750/O2", "atom2_id": "///2/1785/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3603, "atom1_serNum": 33857, "atom2_serNum": 34395, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///2/1750/N3", "atom2_id": "///2/1784/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3604, "atom1_serNum": 33859, "atom2_serNum": 34394, "donAcc_type": "standard", "distance": 2.454, "atom1_id": "///2/1750/N4", "atom2_id": "///2/1784/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3605, "atom1_serNum": 33876, "atom2_serNum": 34354, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///2/1751/O2", "atom2_id": "///2/1782/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3606, "atom1_serNum": 33877, "atom2_serNum": 34352, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///2/1751/N3", "atom2_id": "///2/1782/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3607, "atom1_serNum": 33879, "atom2_serNum": 34351, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///2/1751/N4", "atom2_id": "///2/1782/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3608, "atom1_serNum": 33916, "atom2_serNum": 34286, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///2/1753/O2", "atom2_id": "///2/1779/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3609, "atom1_serNum": 33916, "atom2_serNum": 34309, "donAcc_type": "standard", "distance": 2.641, "atom1_id": "///2/1753/O2", "atom2_id": "///2/1780/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3610, "atom1_serNum": 33917, "atom2_serNum": 34284, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///2/1753/N3", "atom2_id": "///2/1779/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3611, "atom1_serNum": 33917, "atom2_serNum": 34307, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///2/1753/N3", "atom2_id": "///2/1780/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3612, "atom1_serNum": 33919, "atom2_serNum": 34283, "donAcc_type": "standard", "distance": 2.720, "atom1_id": "///2/1753/N4", "atom2_id": "///2/1779/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3613, "atom1_serNum": 33919, "atom2_serNum": 34306, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///2/1753/N4", "atom2_id": "///2/1780/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3614, "atom1_serNum": 33932, "atom2_serNum": 33951, "donAcc_type": "acceptable", "distance": 2.967, "atom1_id": "///2/1754/O2'", "atom2_id": "///2/1755/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3615, "atom1_serNum": 33939, "atom2_serNum": 34263, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///2/1754/O6", "atom2_id": "///2/1778/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3616, "atom1_serNum": 33940, "atom2_serNum": 34261, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///2/1754/N1", "atom2_id": "///2/1778/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3617, "atom1_serNum": 33942, "atom2_serNum": 34260, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///2/1754/N2", "atom2_id": "///2/1778/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3618, "atom1_serNum": 33959, "atom2_serNum": 34243, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///2/1755/O2", "atom2_id": "///2/1777/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3619, "atom1_serNum": 33960, "atom2_serNum": 34241, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///2/1755/N3", "atom2_id": "///2/1777/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3620, "atom1_serNum": 33962, "atom2_serNum": 34240, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///2/1755/N4", "atom2_id": "///2/1777/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3621, "atom1_serNum": 33979, "atom2_serNum": 34220, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///2/1756/O2", "atom2_id": "///2/1776/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3622, "atom1_serNum": 33980, "atom2_serNum": 34218, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///2/1756/N3", "atom2_id": "///2/1776/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3623, "atom1_serNum": 33982, "atom2_serNum": 34025, "donAcc_type": "standard", "distance": 3.869, "atom1_id": "///2/1756/N4", "atom2_id": "///2/1758/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3624, "atom1_serNum": 33982, "atom2_serNum": 34217, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///2/1756/N4", "atom2_id": "///2/1776/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3625, "atom1_serNum": 34018, "atom2_serNum": 34034, "donAcc_type": "acceptable", "distance": 2.610, "atom1_id": "///2/1758/O2'", "atom2_id": "///2/1759/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3626, "atom1_serNum": 34018, "atom2_serNum": 34037, "donAcc_type": "acceptable", "distance": 2.570, "atom1_id": "///2/1758/O2'", "atom2_id": "///2/1759/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3627, "atom1_serNum": 34026, "atom2_serNum": 34194, "donAcc_type": "standard", "distance": 3.186, "atom1_id": "///2/1758/N1", "atom2_id": "///2/1775/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3628, "atom1_serNum": 34049, "atom2_serNum": 34174, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///2/1759/N1", "atom2_id": "///2/1774/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3629, "atom1_serNum": 34051, "atom2_serNum": 34174, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///2/1759/N2", "atom2_id": "///2/1774/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3630, "atom1_serNum": 34071, "atom2_serNum": 34137, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///2/1760/O6", "atom2_id": "///2/1772/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3631, "atom1_serNum": 34072, "atom2_serNum": 34135, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///2/1760/N1", "atom2_id": "///2/1772/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3632, "atom1_serNum": 34074, "atom2_serNum": 34134, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///2/1760/N2", "atom2_id": "///2/1772/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3633, "atom1_serNum": 34091, "atom2_serNum": 34114, "donAcc_type": "questionable", "distance": 2.897, "atom1_id": "///2/1761/O2", "atom2_id": "///2/1771/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3634, "atom1_serNum": 34195, "atom2_serNum": 34217, "donAcc_type": "standard", "distance": 2.513, "atom1_id": "///2/1775/N3", "atom2_id": "///2/1776/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3635, "atom1_serNum": 34210, "atom2_serNum": 34226, "donAcc_type": "acceptable", "distance": 2.617, "atom1_id": "///2/1776/O2'", "atom2_id": "///2/1777/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3636, "atom1_serNum": 34276, "atom2_serNum": 34295, "donAcc_type": "acceptable", "distance": 2.495, "atom1_id": "///2/1779/O2'", "atom2_id": "///2/1780/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3637, "atom1_serNum": 34329, "atom2_serNum": 34417, "donAcc_type": "questionable", "distance": 2.970, "atom1_id": "///2/1781/N6", "atom2_id": "///2/1785/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3638, "atom1_serNum": 34330, "atom2_serNum": 34394, "donAcc_type": "questionable", "distance": 2.999, "atom1_id": "///2/1781/N1", "atom2_id": "///2/1784/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3639, "atom1_serNum": 34430, "atom2_serNum": 34446, "donAcc_type": "acceptable", "distance": 3.361, "atom1_id": "///2/1786/O2'", "atom2_id": "///2/1787/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3640, "atom1_serNum": 34495, "atom2_serNum": 34514, "donAcc_type": "acceptable", "distance": 3.402, "atom1_id": "///2/1789/O2'", "atom2_id": "///2/1790/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3641, "atom1_serNum": 34528, "atom2_serNum": 47263, "donAcc_type": "questionable", "distance": 3.110, "atom1_id": "///2/1790/N3", "atom2_id": "///H/66/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3642, "atom1_serNum": 34536, "atom2_serNum": 47263, "donAcc_type": "questionable", "distance": 3.261, "atom1_id": "///2/1791/O4'", "atom2_id": "///H/66/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3643, "atom1_serNum": 34540, "atom2_serNum": 47267, "donAcc_type": "acceptable", "distance": 3.360, "atom1_id": "///2/1791/O2'", "atom2_id": "///H/67/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3644, "atom1_serNum": 34585, "atom2_serNum": 34603, "donAcc_type": "acceptable", "distance": 3.256, "atom1_id": "///2/1793/O2'", "atom2_id": "///2/1794/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3645, "atom1_serNum": 34650, "atom2_serNum": 34669, "donAcc_type": "acceptable", "distance": 3.124, "atom1_id": "///2/1796/O2'", "atom2_id": "///2/1797/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3646, "atom1_serNum": 34673, "atom2_serNum": 34689, "donAcc_type": "acceptable", "distance": 3.296, "atom1_id": "///2/1797/O2'", "atom2_id": "///2/1798/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3647, "atom1_serNum": 34693, "atom2_serNum": 50156, "donAcc_type": "acceptable", "distance": 2.904, "atom1_id": "///2/1798/O2'", "atom2_id": "///J/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3648, "atom1_serNum": 34827, "atom2_serNum": 34847, "donAcc_type": "questionable", "distance": 2.987, "atom1_id": "///2/1804/O4", "atom2_id": "///2/1805/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3649, "atom1_serNum": 34840, "atom2_serNum": 34859, "donAcc_type": "acceptable", "distance": 2.543, "atom1_id": "///2/1805/O2'", "atom2_id": "///2/1806/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3650, "atom1_serNum": 34925, "atom2_serNum": 34940, "donAcc_type": "acceptable", "distance": 3.079, "atom1_id": "///2/1809/O2'", "atom2_id": "///2/1810/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3651, "atom1_serNum": 34999, "atom2_serNum": 35033, "donAcc_type": "questionable", "distance": 3.021, "atom1_id": "///2/1813/OP2", "atom2_id": "///2/1814/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3652, "atom1_serNum": 35029, "atom2_serNum": 35056, "donAcc_type": "acceptable", "distance": 3.226, "atom1_id": "///2/1814/O2'", "atom2_id": "///2/1815/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3653, "atom1_serNum": 35044, "atom2_serNum": 35078, "donAcc_type": "questionable", "distance": 2.933, "atom1_id": "///2/1815/OP2", "atom2_id": "///2/1816/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3654, "atom1_serNum": 35164, "atom2_serNum": 35183, "donAcc_type": "acceptable", "distance": 2.960, "atom1_id": "///2/1820/O2'", "atom2_id": "///2/1821/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3655, "atom1_serNum": 35194, "atom2_serNum": 35214, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///2/1821/O4", "atom2_id": "///2/1822/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3656, "atom1_serNum": 35207, "atom2_serNum": 66918, "donAcc_type": "acceptable", "distance": 2.154, "atom1_id": "///2/1822/O2'", "atom2_id": "///Y/60/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3657, "atom1_serNum": 35251, "atom2_serNum": 35269, "donAcc_type": "acceptable", "distance": 2.870, "atom1_id": "///2/1824/O2'", "atom2_id": "///2/1825/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3658, "atom1_serNum": 35259, "atom2_serNum": 66922, "donAcc_type": "questionable", "distance": 3.293, "atom1_id": "///2/1824/N1", "atom2_id": "///Y/61/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3659, "atom1_serNum": 35318, "atom2_serNum": 35334, "donAcc_type": "acceptable", "distance": 2.933, "atom1_id": "///2/1827/O2'", "atom2_id": "///2/1828/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3660, "atom1_serNum": 35338, "atom2_serNum": 35349, "donAcc_type": "acceptable", "distance": 2.930, "atom1_id": "///2/1828/O2'", "atom2_id": "///2/1829/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3661, "atom1_serNum": 35342, "atom2_serNum": 35794, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///2/1828/O2", "atom2_id": "///2/1849/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3662, "atom1_serNum": 35358, "atom2_serNum": 35817, "donAcc_type": "acceptable", "distance": 3.816, "atom1_id": "///2/1829/O2'", "atom2_id": "///2/1850/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3663, "atom1_serNum": 35368, "atom2_serNum": 35841, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///2/1829/N2", "atom2_id": "///2/1851/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3664, "atom1_serNum": 35385, "atom2_serNum": 35408, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///2/1830/O2", "atom2_id": "///2/1831/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3665, "atom1_serNum": 35393, "atom2_serNum": 35524, "donAcc_type": "questionable", "distance": 3.094, "atom1_id": "///2/1831/OP2", "atom2_id": "///2/1837/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3666, "atom1_serNum": 35401, "atom2_serNum": 35846, "donAcc_type": "acceptable", "distance": 2.875, "atom1_id": "///2/1831/O2'", "atom2_id": "///2/1852/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3667, "atom1_serNum": 35414, "atom2_serNum": 35586, "donAcc_type": "questionable", "distance": 2.882, "atom1_id": "///2/1832/OP1", "atom2_id": "///2/1840/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3668, "atom1_serNum": 35415, "atom2_serNum": 35524, "donAcc_type": "questionable", "distance": 2.822, "atom1_id": "///2/1832/OP2", "atom2_id": "///2/1837/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3669, "atom1_serNum": 35437, "atom2_serNum": 35509, "donAcc_type": "acceptable", "distance": 3.098, "atom1_id": "///2/1833/OP2", "atom2_id": "///2/1836/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3670, "atom1_serNum": 35473, "atom2_serNum": 35540, "donAcc_type": "standard", "distance": 3.188, "atom1_id": "///2/1834/N1", "atom2_id": "///2/1837/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3671, "atom1_serNum": 35495, "atom2_serNum": 69801, "donAcc_type": "acceptable", "distance": 2.901, "atom1_id": "///2/1835/N1", "atom2_id": "///b/80/ND1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3672, "atom1_serNum": 35500, "atom2_serNum": 35575, "donAcc_type": "acceptable", "distance": 2.548, "atom1_id": "///2/1836/OP1", "atom2_id": "///2/1839/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3673, "atom1_serNum": 35519, "atom2_serNum": 35539, "donAcc_type": "standard", "distance": 3.673, "atom1_id": "///2/1836/N2", "atom2_id": "///2/1837/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3674, "atom1_serNum": 35555, "atom2_serNum": 35573, "donAcc_type": "acceptable", "distance": 3.660, "atom1_id": "///2/1838/O2'", "atom2_id": "///2/1839/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3675, "atom1_serNum": 35559, "atom2_serNum": 58529, "donAcc_type": "standard", "distance": 2.706, "atom1_id": "///2/1838/O2", "atom2_id": "///P/150/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3676, "atom1_serNum": 35560, "atom2_serNum": 35884, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///2/1838/N3", "atom2_id": "///2/1854/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3677, "atom1_serNum": 35571, "atom2_serNum": 36100, "donAcc_type": "questionable", "distance": 3.368, "atom1_id": "///2/1839/O4'", "atom2_id": "///2/1863/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3678, "atom1_serNum": 35582, "atom2_serNum": 36031, "donAcc_type": "standard", "distance": 2.704, "atom1_id": "///2/1839/O4", "atom2_id": "///2/1860/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3679, "atom1_serNum": 35600, "atom2_serNum": 36010, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///2/1840/N3", "atom2_id": "///2/1859/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3680, "atom1_serNum": 35600, "atom2_serNum": 36032, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///2/1840/N3", "atom2_id": "///2/1860/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3681, "atom1_serNum": 35602, "atom2_serNum": 36009, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///2/1840/O4", "atom2_id": "///2/1859/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3682, "atom1_serNum": 35602, "atom2_serNum": 36031, "donAcc_type": "standard", "distance": 3.718, "atom1_id": "///2/1840/O4", "atom2_id": "///2/1860/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3683, "atom1_serNum": 35602, "atom2_serNum": 69395, "donAcc_type": "standard", "distance": 3.756, "atom1_id": "///2/1840/O4", "atom2_id": "///b/28/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3684, "atom1_serNum": 35619, "atom2_serNum": 35989, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///2/1841/O2", "atom2_id": "///2/1858/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3685, "atom1_serNum": 35620, "atom2_serNum": 35987, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///2/1841/N3", "atom2_id": "///2/1858/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3686, "atom1_serNum": 35622, "atom2_serNum": 35986, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///2/1841/N4", "atom2_id": "///2/1858/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3687, "atom1_serNum": 35627, "atom2_serNum": 75105, "donAcc_type": "standard", "distance": 3.086, "atom1_id": "///2/1842/OP2", "atom2_id": "///n/2/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3688, "atom1_serNum": 35627, "atom2_serNum": 75108, "donAcc_type": "standard", "distance": 2.340, "atom1_id": "///2/1842/OP2", "atom2_id": "///n/2/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3689, "atom1_serNum": 35639, "atom2_serNum": 35966, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///2/1842/O2", "atom2_id": "///2/1857/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3690, "atom1_serNum": 35640, "atom2_serNum": 35964, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///2/1842/N3", "atom2_id": "///2/1857/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3691, "atom1_serNum": 35642, "atom2_serNum": 35662, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///2/1842/N4", "atom2_id": "///2/1843/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3692, "atom1_serNum": 35642, "atom2_serNum": 35963, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///2/1842/N4", "atom2_id": "///2/1857/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3693, "atom1_serNum": 35646, "atom2_serNum": 75156, "donAcc_type": "standard", "distance": 2.363, "atom1_id": "///2/1843/OP1", "atom2_id": "///n/7/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3694, "atom1_serNum": 35662, "atom2_serNum": 35943, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///2/1843/O6", "atom2_id": "///2/1856/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3695, "atom1_serNum": 35663, "atom2_serNum": 35941, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///2/1843/N1", "atom2_id": "///2/1856/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3696, "atom1_serNum": 35665, "atom2_serNum": 35940, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///2/1843/N2", "atom2_id": "///2/1856/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3697, "atom1_serNum": 35669, "atom2_serNum": 75194, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///2/1844/OP1", "atom2_id": "///n/11/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3698, "atom1_serNum": 35669, "atom2_serNum": 75195, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///2/1844/OP1", "atom2_id": "///n/11/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3699, "atom1_serNum": 35682, "atom2_serNum": 35921, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///2/1844/O2", "atom2_id": "///2/1855/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3700, "atom1_serNum": 35682, "atom2_serNum": 35923, "donAcc_type": "standard", "distance": 3.285, "atom1_id": "///2/1844/O2", "atom2_id": "///2/1855/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3701, "atom1_serNum": 35683, "atom2_serNum": 35920, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///2/1844/N3", "atom2_id": "///2/1855/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3702, "atom1_serNum": 35685, "atom2_serNum": 35705, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///2/1844/O4", "atom2_id": "///2/1845/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3703, "atom1_serNum": 35685, "atom2_serNum": 75122, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///2/1844/O4", "atom2_id": "///n/4/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3704, "atom1_serNum": 35705, "atom2_serNum": 35900, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///2/1845/N6", "atom2_id": "///2/1854/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3705, "atom1_serNum": 35706, "atom2_serNum": 35898, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///2/1845/N1", "atom2_id": "///2/1854/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3706, "atom1_serNum": 35727, "atom2_serNum": 35880, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///2/1846/O6", "atom2_id": "///2/1853/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3707, "atom1_serNum": 35728, "atom2_serNum": 35878, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///2/1846/N1", "atom2_id": "///2/1853/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3708, "atom1_serNum": 35730, "atom2_serNum": 35877, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///2/1846/N2", "atom2_id": "///2/1853/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3709, "atom1_serNum": 35735, "atom2_serNum": 75206, "donAcc_type": "standard", "distance": 3.012, "atom1_id": "///2/1847/OP2", "atom2_id": "///n/12/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3710, "atom1_serNum": 35750, "atom2_serNum": 35880, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///2/1847/O6", "atom2_id": "///2/1853/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3711, "atom1_serNum": 35771, "atom2_serNum": 35858, "donAcc_type": "standard", "distance": 3.341, "atom1_id": "///2/1848/N3", "atom2_id": "///2/1852/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3712, "atom1_serNum": 35773, "atom2_serNum": 35858, "donAcc_type": "questionable", "distance": 3.166, "atom1_id": "///2/1848/O4", "atom2_id": "///2/1852/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3713, "atom1_serNum": 35822, "atom2_serNum": 75175, "donAcc_type": "standard", "distance": 3.287, "atom1_id": "///2/1851/OP1", "atom2_id": "///n/9/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3714, "atom1_serNum": 35824, "atom2_serNum": 35849, "donAcc_type": "questionable", "distance": 3.251, "atom1_id": "///2/1851/O5'", "atom2_id": "///2/1852/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3715, "atom1_serNum": 35844, "atom2_serNum": 75098, "donAcc_type": "standard", "distance": 3.151, "atom1_id": "///2/1852/OP1", "atom2_id": "///n/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3716, "atom1_serNum": 35884, "atom2_serNum": 58506, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///2/1854/OP1", "atom2_id": "///P/147/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3717, "atom1_serNum": 35884, "atom2_serNum": 58532, "donAcc_type": "standard", "distance": 2.203, "atom1_id": "///2/1854/OP1", "atom2_id": "///P/150/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3718, "atom1_serNum": 35885, "atom2_serNum": 58506, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///2/1854/OP2", "atom2_id": "///P/147/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3719, "atom1_serNum": 35927, "atom2_serNum": 58455, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///2/1856/OP1", "atom2_id": "///P/141/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3720, "atom1_serNum": 35928, "atom2_serNum": 58485, "donAcc_type": "standard", "distance": 2.531, "atom1_id": "///2/1856/OP2", "atom2_id": "///P/146/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3721, "atom1_serNum": 35948, "atom2_serNum": 58494, "donAcc_type": "standard", "distance": 3.036, "atom1_id": "///2/1857/OP2", "atom2_id": "///P/146/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3722, "atom1_serNum": 35949, "atom2_serNum": 58494, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///2/1857/O5'", "atom2_id": "///P/146/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3723, "atom1_serNum": 35970, "atom2_serNum": 69310, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///2/1858/OP1", "atom2_id": "///b/17/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3724, "atom1_serNum": 35971, "atom2_serNum": 58494, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///2/1858/OP2", "atom2_id": "///P/146/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3725, "atom1_serNum": 35971, "atom2_serNum": 58495, "donAcc_type": "standard", "distance": 2.353, "atom1_id": "///2/1858/OP2", "atom2_id": "///P/146/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3726, "atom1_serNum": 35993, "atom2_serNum": 69257, "donAcc_type": "standard", "distance": 2.504, "atom1_id": "///2/1859/OP1", "atom2_id": "///b/10/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3727, "atom1_serNum": 35993, "atom2_serNum": 69272, "donAcc_type": "standard", "distance": 3.463, "atom1_id": "///2/1859/OP1", "atom2_id": "///b/12/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3728, "atom1_serNum": 35994, "atom2_serNum": 69257, "donAcc_type": "standard", "distance": 3.385, "atom1_id": "///2/1859/OP2", "atom2_id": "///b/10/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3729, "atom1_serNum": 36002, "atom2_serNum": 36020, "donAcc_type": "acceptable", "distance": 2.784, "atom1_id": "///2/1859/O2'", "atom2_id": "///2/1860/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3730, "atom1_serNum": 36015, "atom2_serNum": 69257, "donAcc_type": "standard", "distance": 3.561, "atom1_id": "///2/1860/OP1", "atom2_id": "///b/10/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3731, "atom1_serNum": 36016, "atom2_serNum": 69441, "donAcc_type": "standard", "distance": 3.323, "atom1_id": "///2/1860/OP2", "atom2_id": "///b/34/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3732, "atom1_serNum": 36017, "atom2_serNum": 69239, "donAcc_type": "questionable", "distance": 3.085, "atom1_id": "///2/1860/O5'", "atom2_id": "///b/8/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3733, "atom1_serNum": 36024, "atom2_serNum": 36121, "donAcc_type": "acceptable", "distance": 3.901, "atom1_id": "///2/1860/O2'", "atom2_id": "///2/1864/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3734, "atom1_serNum": 36038, "atom2_serNum": 69197, "donAcc_type": "standard", "distance": 3.425, "atom1_id": "///2/1861/OP2", "atom2_id": "///b/4/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3735, "atom1_serNum": 36046, "atom2_serNum": 36060, "donAcc_type": "acceptable", "distance": 2.497, "atom1_id": "///2/1861/O2'", "atom2_id": "///2/1862/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3736, "atom1_serNum": 36067, "atom2_serNum": 69205, "donAcc_type": "standard", "distance": 3.410, "atom1_id": "///2/1862/O3'", "atom2_id": "///b/4/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3737, "atom1_serNum": 36069, "atom2_serNum": 36092, "donAcc_type": "acceptable", "distance": 3.625, "atom1_id": "///2/1862/O2'", "atom2_id": "///2/1863/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3738, "atom1_serNum": 36069, "atom2_serNum": 36106, "donAcc_type": "acceptable", "distance": 2.624, "atom1_id": "///2/1862/O2'", "atom2_id": "///2/1864/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3739, "atom1_serNum": 36073, "atom2_serNum": 69441, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///2/1862/N7", "atom2_id": "///b/34/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3740, "atom1_serNum": 36079, "atom2_serNum": 69775, "donAcc_type": "acceptable", "distance": 2.624, "atom1_id": "///2/1862/N2", "atom2_id": "///b/76/OG", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3741, "atom1_serNum": 36084, "atom2_serNum": 69205, "donAcc_type": "standard", "distance": 2.455, "atom1_id": "///2/1863/OP2", "atom2_id": "///b/4/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3742, "atom1_serNum": 36106, "atom2_serNum": 69205, "donAcc_type": "standard", "distance": 2.487, "atom1_id": "///2/1864/OP2", "atom2_id": "///b/4/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3743, "atom1_serNum": 36106, "atom2_serNum": 69216, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///2/1864/OP2", "atom2_id": "///b/5/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3744, "atom1_serNum": 36107, "atom2_serNum": 69216, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///2/1864/O5'", "atom2_id": "///b/5/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3745, "atom1_serNum": 36119, "atom2_serNum": 69247, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///2/1864/N3", "atom2_id": "///b/9/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3746, "atom1_serNum": 36121, "atom2_serNum": 69441, "donAcc_type": "standard", "distance": 3.396, "atom1_id": "///2/1864/O4", "atom2_id": "///b/34/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3747, "atom1_serNum": 36125, "atom2_serNum": 36158, "donAcc_type": "questionable", "distance": 3.322, "atom1_id": "///2/1865/OP1", "atom2_id": "///2/1866/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3748, "atom1_serNum": 36125, "atom2_serNum": 69860, "donAcc_type": "standard", "distance": 3.278, "atom1_id": "///2/1865/OP1", "atom2_id": "///b/87/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3749, "atom1_serNum": 36125, "atom2_serNum": 69863, "donAcc_type": "standard", "distance": 3.339, "atom1_id": "///2/1865/OP1", "atom2_id": "///b/87/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3750, "atom1_serNum": 36126, "atom2_serNum": 69216, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///2/1865/OP2", "atom2_id": "///b/5/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3751, "atom1_serNum": 36132, "atom2_serNum": 69235, "donAcc_type": "standard", "distance": 3.905, "atom1_id": "///2/1865/O3'", "atom2_id": "///b/7/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3752, "atom1_serNum": 36134, "atom2_serNum": 69930, "donAcc_type": "acceptable", "distance": 3.354, "atom1_id": "///2/1865/O2'", "atom2_id": "///b/95/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3753, "atom1_serNum": 36145, "atom2_serNum": 69933, "donAcc_type": "standard", "distance": 3.365, "atom1_id": "///2/1866/OP1", "atom2_id": "///b/95/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3754, "atom1_serNum": 36154, "atom2_serNum": 36169, "donAcc_type": "acceptable", "distance": 3.070, "atom1_id": "///2/1866/O2'", "atom2_id": "///2/1867/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3755, "atom1_serNum": 36154, "atom2_serNum": 36172, "donAcc_type": "acceptable", "distance": 3.039, "atom1_id": "///2/1866/O2'", "atom2_id": "///2/1867/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3756, "atom1_serNum": 36161, "atom2_serNum": 69837, "donAcc_type": "standard", "distance": 3.313, "atom1_id": "///2/1866/N6", "atom2_id": "///b/85/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3757, "atom1_serNum": 36176, "atom2_serNum": 36188, "donAcc_type": "acceptable", "distance": 2.671, "atom1_id": "///2/1867/O2'", "atom2_id": "///2/1868/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3758, "atom1_serNum": 36176, "atom2_serNum": 69458, "donAcc_type": "acceptable", "distance": 3.863, "atom1_id": "///2/1867/O2'", "atom2_id": "///b/37/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3759, "atom1_serNum": 36183, "atom2_serNum": 69823, "donAcc_type": "questionable", "distance": 2.994, "atom1_id": "///2/1867/O4", "atom2_id": "///b/83/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3760, "atom1_serNum": 36188, "atom2_serNum": 69473, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///2/1868/OP2", "atom2_id": "///b/39/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3761, "atom1_serNum": 36201, "atom2_serNum": 69951, "donAcc_type": "standard", "distance": 2.346, "atom1_id": "///2/1868/N3", "atom2_id": "///b/98/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3762, "atom1_serNum": 36223, "atom2_serNum": 38660, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///2/1869/N6", "atom2_id": "///C/111/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3763, "atom1_serNum": 36234, "atom2_serNum": 36673, "donAcc_type": "acceptable", "distance": 2.156, "atom1_id": "///B/2/OG", "atom2_id": "///B/56/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3764, "atom1_serNum": 36234, "atom2_serNum": 65373, "donAcc_type": "acceptable", "distance": 3.169, "atom1_id": "///B/2/OG", "atom2_id": "///W/78/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3765, "atom1_serNum": 36234, "atom2_serNum": 65385, "donAcc_type": "acceptable", "distance": 3.887, "atom1_id": "///B/2/OG", "atom2_id": "///W/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3766, "atom1_serNum": 36235, "atom2_serNum": 65373, "donAcc_type": "standard", "distance": 2.594, "atom1_id": "///B/3/N", "atom2_id": "///W/78/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3767, "atom1_serNum": 36260, "atom2_serNum": 36282, "donAcc_type": "standard", "distance": 3.303, "atom1_id": "///B/7/N", "atom2_id": "///B/9/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3768, "atom1_serNum": 36263, "atom2_serNum": 36300, "donAcc_type": "standard", "distance": 3.555, "atom1_id": "///B/7/O", "atom2_id": "///B/11/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3769, "atom1_serNum": 36270, "atom2_serNum": 36660, "donAcc_type": "standard", "distance": 2.413, "atom1_id": "///B/8/O", "atom2_id": "///B/55/NE1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3770, "atom1_serNum": 36278, "atom2_serNum": 36292, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///B/9/O", "atom2_id": "///B/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3771, "atom1_serNum": 36292, "atom2_serNum": 36326, "donAcc_type": "standard", "distance": 3.966, "atom1_id": "///B/11/N", "atom2_id": "///B/14/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3772, "atom1_serNum": 36301, "atom2_serNum": 36317, "donAcc_type": "standard", "distance": 3.201, "atom1_id": "///B/12/N", "atom2_id": "///B/13/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3773, "atom1_serNum": 36310, "atom2_serNum": 36317, "donAcc_type": "standard", "distance": 2.641, "atom1_id": "///B/13/N", "atom2_id": "///B/13/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3774, "atom1_serNum": 36313, "atom2_serNum": 36342, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///B/13/O", "atom2_id": "///B/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3775, "atom1_serNum": 36322, "atom2_serNum": 36351, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///B/14/O", "atom2_id": "///B/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3776, "atom1_serNum": 36325, "atom2_serNum": 37614, "donAcc_type": "standard", "distance": 3.496, "atom1_id": "///B/14/OD1", "atom2_id": "///B/180/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3777, "atom1_serNum": 36330, "atom2_serNum": 36362, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///B/15/O", "atom2_id": "///B/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3778, "atom1_serNum": 36337, "atom2_serNum": 36370, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///B/16/O", "atom2_id": "///B/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3779, "atom1_serNum": 36345, "atom2_serNum": 36375, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///B/17/O", "atom2_id": "///B/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3780, "atom1_serNum": 36354, "atom2_serNum": 36380, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///B/18/O", "atom2_id": "///B/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3781, "atom1_serNum": 36354, "atom2_serNum": 36384, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///B/18/O", "atom2_id": "///B/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3782, "atom1_serNum": 36354, "atom2_serNum": 36389, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///B/18/O", "atom2_id": "///B/23/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3783, "atom1_serNum": 36354, "atom2_serNum": 36397, "donAcc_type": "acceptable", "distance": 3.934, "atom1_id": "///B/18/O", "atom2_id": "///B/24/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3784, "atom1_serNum": 36383, "atom2_serNum": 36401, "donAcc_type": "standard", "distance": 3.538, "atom1_id": "///B/22/O", "atom2_id": "///B/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3785, "atom1_serNum": 36383, "atom2_serNum": 37485, "donAcc_type": "standard", "distance": 3.571, "atom1_id": "///B/22/O", "atom2_id": "///B/164/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3786, "atom1_serNum": 36394, "atom2_serNum": 36601, "donAcc_type": "standard", "distance": 3.114, "atom1_id": "///B/24/O", "atom2_id": "///B/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3787, "atom1_serNum": 36404, "atom2_serNum": 37485, "donAcc_type": "standard", "distance": 3.499, "atom1_id": "///B/25/O", "atom2_id": "///B/164/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3788, "atom1_serNum": 36409, "atom2_serNum": 36584, "donAcc_type": "standard", "distance": 3.563, "atom1_id": "///B/26/N", "atom2_id": "///B/47/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3789, "atom1_serNum": 36416, "atom2_serNum": 36572, "donAcc_type": "questionable", "distance": 3.184, "atom1_id": "///B/27/O", "atom2_id": "///B/45/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3790, "atom1_serNum": 36416, "atom2_serNum": 36581, "donAcc_type": "standard", "distance": 3.464, "atom1_id": "///B/27/O", "atom2_id": "///B/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3791, "atom1_serNum": 36440, "atom2_serNum": 37373, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///B/31/N", "atom2_id": "///B/150/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3792, "atom1_serNum": 36443, "atom2_serNum": 36468, "donAcc_type": "standard", "distance": 3.169, "atom1_id": "///B/31/O", "atom2_id": "///B/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3793, "atom1_serNum": 36446, "atom2_serNum": 36459, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///B/31/OD1", "atom2_id": "///B/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3794, "atom1_serNum": 36467, "atom2_serNum": 37401, "donAcc_type": "standard", "distance": 3.935, "atom1_id": "///B/33/NE2", "atom2_id": "///B/154/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3795, "atom1_serNum": 36467, "atom2_serNum": 65266, "donAcc_type": "standard", "distance": 2.520, "atom1_id": "///B/33/NE2", "atom2_id": "///W/63/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3796, "atom1_serNum": 36467, "atom2_serNum": 65275, "donAcc_type": "standard", "distance": 3.266, "atom1_id": "///B/33/NE2", "atom2_id": "///W/64/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3797, "atom1_serNum": 36479, "atom2_serNum": 36506, "donAcc_type": "standard", "distance": 3.669, "atom1_id": "///B/35/O", "atom2_id": "///B/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3798, "atom1_serNum": 36488, "atom2_serNum": 36643, "donAcc_type": "standard", "distance": 2.382, "atom1_id": "///B/36/O", "atom2_id": "///B/53/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3799, "atom1_serNum": 36493, "atom2_serNum": 65296, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///B/36/NE2", "atom2_id": "///W/67/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3800, "atom1_serNum": 36514, "atom2_serNum": 36596, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///B/39/N", "atom2_id": "///B/48/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3801, "atom1_serNum": 36529, "atom2_serNum": 36593, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///B/40/O", "atom2_id": "///B/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3802, "atom1_serNum": 36549, "atom2_serNum": 36569, "donAcc_type": "standard", "distance": 3.496, "atom1_id": "///B/42/O", "atom2_id": "///B/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3803, "atom1_serNum": 36612, "atom2_serNum": 36650, "donAcc_type": "acceptable", "distance": 3.031, "atom1_id": "///B/50/O", "atom2_id": "///B/54/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3804, "atom1_serNum": 36615, "atom2_serNum": 36617, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///B/50/OD1", "atom2_id": "///B/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3805, "atom1_serNum": 36615, "atom2_serNum": 36625, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///B/50/OD1", "atom2_id": "///B/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3806, "atom1_serNum": 36616, "atom2_serNum": 36641, "donAcc_type": "questionable", "distance": 3.086, "atom1_id": "///B/50/ND2", "atom2_id": "///B/53/NE", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 3807, "atom1_serNum": 36620, "atom2_serNum": 36652, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///B/51/O", "atom2_id": "///B/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3808, "atom1_serNum": 36628, "atom2_serNum": 36666, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///B/52/O", "atom2_id": "///B/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3809, "atom1_serNum": 36637, "atom2_serNum": 36675, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///B/53/O", "atom2_id": "///B/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3810, "atom1_serNum": 36648, "atom2_serNum": 36684, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///B/54/O", "atom2_id": "///B/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3811, "atom1_serNum": 36650, "atom2_serNum": 37468, "donAcc_type": "acceptable", "distance": 3.153, "atom1_id": "///B/54/OG1", "atom2_id": "///B/162/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3812, "atom1_serNum": 36655, "atom2_serNum": 36692, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///B/55/O", "atom2_id": "///B/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3813, "atom1_serNum": 36669, "atom2_serNum": 36700, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///B/56/O", "atom2_id": "///B/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3814, "atom1_serNum": 36678, "atom2_serNum": 36708, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///B/57/O", "atom2_id": "///B/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3815, "atom1_serNum": 36683, "atom2_serNum": 37455, "donAcc_type": "standard", "distance": 2.481, "atom1_id": "///B/57/NZ", "atom2_id": "///B/160/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3816, "atom1_serNum": 36687, "atom2_serNum": 36713, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///B/58/O", "atom2_id": "///B/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3817, "atom1_serNum": 36695, "atom2_serNum": 36718, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///B/59/O", "atom2_id": "///B/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3818, "atom1_serNum": 36703, "atom2_serNum": 36729, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///B/60/O", "atom2_id": "///B/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3819, "atom1_serNum": 36711, "atom2_serNum": 36734, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///B/61/O", "atom2_id": "///B/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3820, "atom1_serNum": 36716, "atom2_serNum": 36742, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///B/62/O", "atom2_id": "///B/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3821, "atom1_serNum": 36721, "atom2_serNum": 36749, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///B/63/O", "atom2_id": "///B/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3822, "atom1_serNum": 36727, "atom2_serNum": 65062, "donAcc_type": "standard", "distance": 3.167, "atom1_id": "///B/63/NH1", "atom2_id": "///W/37/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3823, "atom1_serNum": 36774, "atom2_serNum": 36791, "donAcc_type": "standard", "distance": 3.491, "atom1_id": "///B/70/O", "atom2_id": "///B/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3824, "atom1_serNum": 36777, "atom2_serNum": 36786, "donAcc_type": "standard", "distance": 3.028, "atom1_id": "///B/70/OD1", "atom2_id": "///B/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3825, "atom1_serNum": 36794, "atom2_serNum": 37138, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///B/73/O", "atom2_id": "///B/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3826, "atom1_serNum": 36794, "atom2_serNum": 37149, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///B/73/O", "atom2_id": "///B/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3827, "atom1_serNum": 36802, "atom2_serNum": 36960, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///B/74/O", "atom2_id": "///B/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3828, "atom1_serNum": 36806, "atom2_serNum": 37152, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///B/75/N", "atom2_id": "///B/121/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3829, "atom1_serNum": 36809, "atom2_serNum": 37165, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///B/75/O", "atom2_id": "///B/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3830, "atom1_serNum": 36812, "atom2_serNum": 36963, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///B/76/N", "atom2_id": "///B/97/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3831, "atom1_serNum": 36815, "atom2_serNum": 36974, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///B/76/O", "atom2_id": "///B/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3832, "atom1_serNum": 36819, "atom2_serNum": 37168, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///B/77/N", "atom2_id": "///B/123/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3833, "atom1_serNum": 36822, "atom2_serNum": 37184, "donAcc_type": "acceptable", "distance": 3.092, "atom1_id": "///B/77/O", "atom2_id": "///B/125/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3834, "atom1_serNum": 36827, "atom2_serNum": 36977, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///B/78/N", "atom2_id": "///B/99/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3835, "atom1_serNum": 36830, "atom2_serNum": 36876, "donAcc_type": "questionable", "distance": 3.130, "atom1_id": "///B/78/O", "atom2_id": "///B/84/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3836, "atom1_serNum": 36830, "atom2_serNum": 36987, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///B/78/O", "atom2_id": "///B/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3837, "atom1_serNum": 36832, "atom2_serNum": 36842, "donAcc_type": "acceptable", "distance": 3.751, "atom1_id": "///B/78/OG", "atom2_id": "///B/80/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3838, "atom1_serNum": 36832, "atom2_serNum": 37184, "donAcc_type": "acceptable", "distance": 3.660, "atom1_id": "///B/78/OG", "atom2_id": "///B/125/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3839, "atom1_serNum": 36833, "atom2_serNum": 37223, "donAcc_type": "standard", "distance": 3.780, "atom1_id": "///B/79/N", "atom2_id": "///B/130/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3840, "atom1_serNum": 36836, "atom2_serNum": 36838, "donAcc_type": "acceptable", "distance": 2.885, "atom1_id": "///B/79/O", "atom2_id": "///B/79/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3841, "atom1_serNum": 36838, "atom2_serNum": 36991, "donAcc_type": "acceptable", "distance": 3.921, "atom1_id": "///B/79/OG", "atom2_id": "///B/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3842, "atom1_serNum": 36848, "atom2_serNum": 37192, "donAcc_type": "standard", "distance": 3.758, "atom1_id": "///B/80/NH1", "atom2_id": "///B/126/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3843, "atom1_serNum": 36856, "atom2_serNum": 37826, "donAcc_type": "acceptable", "distance": 2.944, "atom1_id": "///B/81/OD1", "atom2_id": "///B/204/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3844, "atom1_serNum": 36881, "atom2_serNum": 36909, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///B/85/O", "atom2_id": "///B/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3845, "atom1_serNum": 36887, "atom2_serNum": 37787, "donAcc_type": "standard", "distance": 2.647, "atom1_id": "///B/85/NH1", "atom2_id": "///B/201/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3846, "atom1_serNum": 36887, "atom2_serNum": 37807, "donAcc_type": "standard", "distance": 2.311, "atom1_id": "///B/85/NH1", "atom2_id": "///B/203/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3847, "atom1_serNum": 36888, "atom2_serNum": 37787, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///B/85/NH2", "atom2_id": "///B/201/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3848, "atom1_serNum": 36888, "atom2_serNum": 61295, "donAcc_type": "standard", "distance": 3.140, "atom1_id": "///B/85/NH2", "atom2_id": "///S/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3849, "atom1_serNum": 36892, "atom2_serNum": 36918, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///B/86/O", "atom2_id": "///B/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3850, "atom1_serNum": 36897, "atom2_serNum": 36929, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///B/87/O", "atom2_id": "///B/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3851, "atom1_serNum": 36904, "atom2_serNum": 36934, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///B/88/O", "atom2_id": "///B/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3852, "atom1_serNum": 36912, "atom2_serNum": 36939, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///B/89/O", "atom2_id": "///B/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3853, "atom1_serNum": 36921, "atom2_serNum": 36944, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///B/90/O", "atom2_id": "///B/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3854, "atom1_serNum": 36921, "atom2_serNum": 36949, "donAcc_type": "acceptable", "distance": 2.561, "atom1_id": "///B/90/O", "atom2_id": "///B/94/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3855, "atom1_serNum": 36932, "atom2_serNum": 36951, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///B/91/O", "atom2_id": "///B/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3856, "atom1_serNum": 36932, "atom2_serNum": 36955, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///B/91/O", "atom2_id": "///B/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3857, "atom1_serNum": 36947, "atom2_serNum": 37667, "donAcc_type": "standard", "distance": 2.629, "atom1_id": "///B/94/O", "atom2_id": "///B/186/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3858, "atom1_serNum": 36994, "atom2_serNum": 37013, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///B/102/O", "atom2_id": "///B/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3859, "atom1_serNum": 37000, "atom2_serNum": 37005, "donAcc_type": "standard", "distance": 2.465, "atom1_id": "///B/102/NH1", "atom2_id": "///B/103/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3860, "atom1_serNum": 37023, "atom2_serNum": 37031, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///B/105/O", "atom2_id": "///B/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3861, "atom1_serNum": 37030, "atom2_serNum": 37089, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///B/106/O", "atom2_id": "///B/113/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3862, "atom1_serNum": 37034, "atom2_serNum": 37111, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///B/107/O", "atom2_id": "///B/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3863, "atom1_serNum": 37052, "atom2_serNum": 39937, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///B/109/O", "atom2_id": "///D/89/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3864, "atom1_serNum": 37054, "atom2_serNum": 37269, "donAcc_type": "acceptable", "distance": 3.943, "atom1_id": "///B/109/OG1", "atom2_id": "///B/136/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3865, "atom1_serNum": 37062, "atom2_serNum": 37064, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///B/110/OD1", "atom2_id": "///B/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3866, "atom1_serNum": 37062, "atom2_serNum": 37073, "donAcc_type": "standard", "distance": 3.505, "atom1_id": "///B/110/OD1", "atom2_id": "///B/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3867, "atom1_serNum": 37063, "atom2_serNum": 37088, "donAcc_type": "standard", "distance": 3.929, "atom1_id": "///B/110/ND2", "atom2_id": "///B/113/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3868, "atom1_serNum": 37064, "atom2_serNum": 37071, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///B/111/N", "atom2_id": "///B/111/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3869, "atom1_serNum": 37093, "atom2_serNum": 37100, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///B/114/O", "atom2_id": "///B/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3870, "atom1_serNum": 37125, "atom2_serNum": 39739, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///B/118/O", "atom2_id": "///D/65/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3871, "atom1_serNum": 37129, "atom2_serNum": 39739, "donAcc_type": "standard", "distance": 2.344, "atom1_id": "///B/118/OE1", "atom2_id": "///D/65/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3872, "atom1_serNum": 37130, "atom2_serNum": 39729, "donAcc_type": "acceptable", "distance": 3.073, "atom1_id": "///B/118/OE2", "atom2_id": "///D/64/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3873, "atom1_serNum": 37157, "atom2_serNum": 37324, "donAcc_type": "standard", "distance": 3.229, "atom1_id": "///B/122/N", "atom2_id": "///B/143/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3874, "atom1_serNum": 37160, "atom2_serNum": 37335, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///B/122/O", "atom2_id": "///B/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3875, "atom1_serNum": 37172, "atom2_serNum": 37338, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///B/124/N", "atom2_id": "///B/145/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3876, "atom1_serNum": 37175, "atom2_serNum": 37348, "donAcc_type": "standard", "distance": 3.632, "atom1_id": "///B/124/O", "atom2_id": "///B/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3877, "atom1_serNum": 37182, "atom2_serNum": 37351, "donAcc_type": "questionable", "distance": 2.802, "atom1_id": "///B/125/O", "atom2_id": "///B/147/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3878, "atom1_serNum": 37182, "atom2_serNum": 37493, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///B/125/O", "atom2_id": "///B/165/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3879, "atom1_serNum": 37184, "atom2_serNum": 37563, "donAcc_type": "acceptable", "distance": 3.743, "atom1_id": "///B/125/OG1", "atom2_id": "///B/175/NE1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3880, "atom1_serNum": 37189, "atom2_serNum": 37217, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///B/126/O", "atom2_id": "///B/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3881, "atom1_serNum": 37193, "atom2_serNum": 37194, "donAcc_type": "standard", "distance": 3.080, "atom1_id": "///B/126/OD2", "atom2_id": "///B/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3882, "atom1_serNum": 37193, "atom2_serNum": 37201, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///B/126/OD2", "atom2_id": "///B/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3883, "atom1_serNum": 37211, "atom2_serNum": 37380, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///B/128/NH2", "atom2_id": "///B/151/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3884, "atom1_serNum": 37220, "atom2_serNum": 37251, "donAcc_type": "standard", "distance": 3.822, "atom1_id": "///B/130/O", "atom2_id": "///B/134/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3885, "atom1_serNum": 37228, "atom2_serNum": 37264, "donAcc_type": "acceptable", "distance": 3.177, "atom1_id": "///B/131/O", "atom2_id": "///B/135/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3886, "atom1_serNum": 37238, "atom2_serNum": 37264, "donAcc_type": "acceptable", "distance": 2.951, "atom1_id": "///B/132/O", "atom2_id": "///B/135/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3887, "atom1_serNum": 37238, "atom2_serNum": 37266, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///B/132/O", "atom2_id": "///B/136/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3888, "atom1_serNum": 37247, "atom2_serNum": 37275, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///B/133/O", "atom2_id": "///B/137/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3889, "atom1_serNum": 37254, "atom2_serNum": 37280, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///B/134/O", "atom2_id": "///B/138/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3890, "atom1_serNum": 37278, "atom2_serNum": 37298, "donAcc_type": "standard", "distance": 3.299, "atom1_id": "///B/137/O", "atom2_id": "///B/140/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3891, "atom1_serNum": 37278, "atom2_serNum": 37301, "donAcc_type": "questionable", "distance": 2.741, "atom1_id": "///B/137/O", "atom2_id": "///B/140/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3892, "atom1_serNum": 37283, "atom2_serNum": 37285, "donAcc_type": "acceptable", "distance": 2.811, "atom1_id": "///B/138/O", "atom2_id": "///B/138/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3893, "atom1_serNum": 37301, "atom2_serNum": 37313, "donAcc_type": "standard", "distance": 2.817, "atom1_id": "///B/140/O", "atom2_id": "///B/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3894, "atom1_serNum": 37311, "atom2_serNum": 39905, "donAcc_type": "acceptable", "distance": 3.911, "atom1_id": "///B/141/OD1", "atom2_id": "///D/85/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3895, "atom1_serNum": 37311, "atom2_serNum": 65001, "donAcc_type": "questionable", "distance": 2.839, "atom1_id": "///B/141/OD1", "atom2_id": "///W/29/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3896, "atom1_serNum": 37311, "atom2_serNum": 65016, "donAcc_type": "questionable", "distance": 2.782, "atom1_id": "///B/141/OD1", "atom2_id": "///W/31/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3897, "atom1_serNum": 37312, "atom2_serNum": 39892, "donAcc_type": "standard", "distance": 3.524, "atom1_id": "///B/141/ND2", "atom2_id": "///D/84/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3898, "atom1_serNum": 37316, "atom2_serNum": 65243, "donAcc_type": "standard", "distance": 3.548, "atom1_id": "///B/142/O", "atom2_id": "///W/60/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3899, "atom1_serNum": 37328, "atom2_serNum": 37443, "donAcc_type": "standard", "distance": 3.337, "atom1_id": "///B/144/N", "atom2_id": "///B/158/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3900, "atom1_serNum": 37331, "atom2_serNum": 37436, "donAcc_type": "standard", "distance": 3.272, "atom1_id": "///B/144/O", "atom2_id": "///B/158/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3901, "atom1_serNum": 37331, "atom2_serNum": 37444, "donAcc_type": "standard", "distance": 3.071, "atom1_id": "///B/144/O", "atom2_id": "///B/159/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3902, "atom1_serNum": 37333, "atom2_serNum": 37420, "donAcc_type": "acceptable", "distance": 3.313, "atom1_id": "///B/144/OG1", "atom2_id": "///B/156/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3903, "atom1_serNum": 37343, "atom2_serNum": 37447, "donAcc_type": "standard", "distance": 2.533, "atom1_id": "///B/146/N", "atom2_id": "///B/159/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3904, "atom1_serNum": 37346, "atom2_serNum": 37457, "donAcc_type": "standard", "distance": 2.474, "atom1_id": "///B/146/O", "atom2_id": "///B/161/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3905, "atom1_serNum": 37351, "atom2_serNum": 37493, "donAcc_type": "standard", "distance": 2.679, "atom1_id": "///B/147/O", "atom2_id": "///B/165/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3906, "atom1_serNum": 37356, "atom2_serNum": 37460, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///B/148/N", "atom2_id": "///B/161/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3907, "atom1_serNum": 37359, "atom2_serNum": 37460, "donAcc_type": "questionable", "distance": 2.837, "atom1_id": "///B/148/O", "atom2_id": "///B/161/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3908, "atom1_serNum": 37359, "atom2_serNum": 37472, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///B/148/O", "atom2_id": "///B/163/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3909, "atom1_serNum": 37362, "atom2_serNum": 37390, "donAcc_type": "acceptable", "distance": 3.085, "atom1_id": "///B/149/N", "atom2_id": "///B/152/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3910, "atom1_serNum": 37368, "atom2_serNum": 37486, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///B/149/OD1", "atom2_id": "///B/165/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3911, "atom1_serNum": 37369, "atom2_serNum": 37492, "donAcc_type": "standard", "distance": 2.533, "atom1_id": "///B/149/ND2", "atom2_id": "///B/165/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3912, "atom1_serNum": 37413, "atom2_serNum": 65247, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///B/155/NE", "atom2_id": "///W/61/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3913, "atom1_serNum": 37417, "atom2_serNum": 65236, "donAcc_type": "standard", "distance": 3.232, "atom1_id": "///B/156/N", "atom2_id": "///W/60/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3914, "atom1_serNum": 37442, "atom2_serNum": 65281, "donAcc_type": "acceptable", "distance": 2.815, "atom1_id": "///B/158/OD1", "atom2_id": "///W/65/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3915, "atom1_serNum": 37443, "atom2_serNum": 65240, "donAcc_type": "standard", "distance": 3.526, "atom1_id": "///B/158/OD2", "atom2_id": "///W/60/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3916, "atom1_serNum": 37460, "atom2_serNum": 37472, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///B/161/O", "atom2_id": "///B/163/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3917, "atom1_serNum": 37484, "atom2_serNum": 37494, "donAcc_type": "standard", "distance": 2.676, "atom1_id": "///B/164/OD1", "atom2_id": "///B/166/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3918, "atom1_serNum": 37506, "atom2_serNum": 37528, "donAcc_type": "standard", "distance": 3.222, "atom1_id": "///B/167/O", "atom2_id": "///B/171/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3919, "atom1_serNum": 37510, "atom2_serNum": 37535, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///B/168/O", "atom2_id": "///B/172/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3920, "atom1_serNum": 37515, "atom2_serNum": 37539, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///B/169/O", "atom2_id": "///B/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3921, "atom1_serNum": 37525, "atom2_serNum": 37547, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///B/170/O", "atom2_id": "///B/174/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3922, "atom1_serNum": 37531, "atom2_serNum": 37555, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///B/171/O", "atom2_id": "///B/175/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3923, "atom1_serNum": 37538, "atom2_serNum": 37569, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///B/172/O", "atom2_id": "///B/176/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3924, "atom1_serNum": 37542, "atom2_serNum": 37583, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///B/173/O", "atom2_id": "///B/177/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3925, "atom1_serNum": 37550, "atom2_serNum": 37591, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///B/174/O", "atom2_id": "///B/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3926, "atom1_serNum": 37558, "atom2_serNum": 37599, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///B/175/O", "atom2_id": "///B/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3927, "atom1_serNum": 37572, "atom2_serNum": 37604, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///B/176/O", "atom2_id": "///B/180/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3928, "atom1_serNum": 37586, "atom2_serNum": 37615, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///B/177/O", "atom2_id": "///B/181/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3929, "atom1_serNum": 37594, "atom2_serNum": 37624, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///B/178/O", "atom2_id": "///B/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3930, "atom1_serNum": 37602, "atom2_serNum": 37631, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///B/179/O", "atom2_id": "///B/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3931, "atom1_serNum": 37607, "atom2_serNum": 37639, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///B/180/O", "atom2_id": "///B/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3932, "atom1_serNum": 37613, "atom2_serNum": 37753, "donAcc_type": "standard", "distance": 3.892, "atom1_id": "///B/180/NH1", "atom2_id": "///B/196/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3933, "atom1_serNum": 37618, "atom2_serNum": 37650, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///B/181/O", "atom2_id": "///B/185/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3934, "atom1_serNum": 37627, "atom2_serNum": 37658, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///B/182/O", "atom2_id": "///B/186/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3935, "atom1_serNum": 37634, "atom2_serNum": 37673, "donAcc_type": "standard", "distance": 3.506, "atom1_id": "///B/183/O", "atom2_id": "///B/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3936, "atom1_serNum": 37649, "atom2_serNum": 37753, "donAcc_type": "standard", "distance": 3.329, "atom1_id": "///B/184/NH2", "atom2_id": "///B/196/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3937, "atom1_serNum": 37672, "atom2_serNum": 65124, "donAcc_type": "standard", "distance": 3.487, "atom1_id": "///B/187/O", "atom2_id": "///W/45/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3938, "atom1_serNum": 37693, "atom2_serNum": 37705, "donAcc_type": "acceptable", "distance": 3.843, "atom1_id": "///B/190/OG", "atom2_id": "///B/192/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3939, "atom1_serNum": 37704, "atom2_serNum": 65107, "donAcc_type": "standard", "distance": 2.342, "atom1_id": "///B/191/NH2", "atom2_id": "///W/43/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3940, "atom1_serNum": 37714, "atom2_serNum": 37720, "donAcc_type": "acceptable", "distance": 2.939, "atom1_id": "///B/193/N", "atom2_id": "///B/193/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 3941, "atom1_serNum": 37717, "atom2_serNum": 37731, "donAcc_type": "standard", "distance": 3.258, "atom1_id": "///B/193/O", "atom2_id": "///B/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3942, "atom1_serNum": 37734, "atom2_serNum": 37754, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///B/195/O", "atom2_id": "///B/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3943, "atom1_serNum": 37745, "atom2_serNum": 37752, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///B/196/N", "atom2_id": "///B/196/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3944, "atom1_serNum": 37764, "atom2_serNum": 37784, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///B/198/O", "atom2_id": "///B/201/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3945, "atom1_serNum": 37772, "atom2_serNum": 37792, "donAcc_type": "standard", "distance": 3.633, "atom1_id": "///B/199/O", "atom2_id": "///B/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3946, "atom1_serNum": 37779, "atom2_serNum": 37804, "donAcc_type": "standard", "distance": 3.083, "atom1_id": "///B/200/O", "atom2_id": "///B/203/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3947, "atom1_serNum": 37783, "atom2_serNum": 61353, "donAcc_type": "questionable", "distance": 2.777, "atom1_id": "///B/200/OD2", "atom2_id": "///S/89/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3948, "atom1_serNum": 37836, "atom2_serNum": 61298, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///B/205/NH1", "atom2_id": "///S/82/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3949, "atom1_serNum": 37837, "atom2_serNum": 61298, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///B/205/NH2", "atom2_id": "///S/82/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3950, "atom1_serNum": 37841, "atom2_serNum": 37871, "donAcc_type": "standard", "distance": 2.403, "atom1_id": "///B/206/O", "atom2_id": "///B/210/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3951, "atom1_serNum": 37849, "atom2_serNum": 37879, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///B/207/O", "atom2_id": "///B/211/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3952, "atom1_serNum": 37856, "atom2_serNum": 37888, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///B/208/O", "atom2_id": "///B/212/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3953, "atom1_serNum": 37862, "atom2_serNum": 37869, "donAcc_type": "standard", "distance": 2.676, "atom1_id": "///B/209/N", "atom2_id": "///B/209/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3954, "atom1_serNum": 37865, "atom2_serNum": 37897, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///B/209/O", "atom2_id": "///B/213/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3955, "atom1_serNum": 37874, "atom2_serNum": 37906, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///B/210/O", "atom2_id": "///B/214/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3956, "atom1_serNum": 37882, "atom2_serNum": 37915, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///B/211/O", "atom2_id": "///B/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3957, "atom1_serNum": 37891, "atom2_serNum": 37924, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///B/212/O", "atom2_id": "///B/216/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3958, "atom1_serNum": 37900, "atom2_serNum": 37929, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///B/213/O", "atom2_id": "///B/217/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3959, "atom1_serNum": 37913, "atom2_serNum": 61291, "donAcc_type": "standard", "distance": 2.569, "atom1_id": "///B/214/OE1", "atom2_id": "///S/81/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3960, "atom1_serNum": 37957, "atom2_serNum": 37980, "donAcc_type": "standard", "distance": 3.443, "atom1_id": "///C/23/O", "atom2_id": "///C/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3961, "atom1_serNum": 37965, "atom2_serNum": 37986, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///C/24/O", "atom2_id": "///C/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3962, "atom1_serNum": 37989, "atom2_serNum": 38183, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///C/27/O", "atom2_id": "///C/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3963, "atom1_serNum": 38004, "atom2_serNum": 38172, "donAcc_type": "standard", "distance": 2.497, "atom1_id": "///C/29/N", "atom2_id": "///C/49/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3964, "atom1_serNum": 38007, "atom2_serNum": 38169, "donAcc_type": "standard", "distance": 3.323, "atom1_id": "///C/29/O", "atom2_id": "///C/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3965, "atom1_serNum": 38026, "atom2_serNum": 38157, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///C/31/N", "atom2_id": "///C/47/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3966, "atom1_serNum": 38029, "atom2_serNum": 38154, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///C/31/O", "atom2_id": "///C/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3967, "atom1_serNum": 38041, "atom2_serNum": 38536, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///C/32/O", "atom2_id": "///C/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3968, "atom1_serNum": 38046, "atom2_serNum": 38144, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///C/33/N", "atom2_id": "///C/45/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3969, "atom1_serNum": 38049, "atom2_serNum": 38133, "donAcc_type": "standard", "distance": 3.670, "atom1_id": "///C/33/O", "atom2_id": "///C/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3970, "atom1_serNum": 38053, "atom2_serNum": 38539, "donAcc_type": "standard", "distance": 2.606, "atom1_id": "///C/34/N", "atom2_id": "///C/96/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3971, "atom1_serNum": 38056, "atom2_serNum": 38555, "donAcc_type": "acceptable", "distance": 2.522, "atom1_id": "///C/34/O", "atom2_id": "///C/98/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3972, "atom1_serNum": 38062, "atom2_serNum": 38117, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///C/35/N", "atom2_id": "///C/42/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3973, "atom1_serNum": 38065, "atom2_serNum": 38121, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///C/35/O", "atom2_id": "///C/42/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3974, "atom1_serNum": 38065, "atom2_serNum": 38124, "donAcc_type": "standard", "distance": 2.514, "atom1_id": "///C/35/O", "atom2_id": "///C/42/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3975, "atom1_serNum": 38070, "atom2_serNum": 38087, "donAcc_type": "standard", "distance": 3.070, "atom1_id": "///C/36/O", "atom2_id": "///C/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3976, "atom1_serNum": 38074, "atom2_serNum": 39650, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///C/37/N", "atom2_id": "///C/231/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3977, "atom1_serNum": 38082, "atom2_serNum": 39288, "donAcc_type": "questionable", "distance": 3.015, "atom1_id": "///C/38/O", "atom2_id": "///C/186/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3978, "atom1_serNum": 38105, "atom2_serNum": 38371, "donAcc_type": "questionable", "distance": 3.337, "atom1_id": "///C/40/ND2", "atom2_id": "///C/76/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 3979, "atom1_serNum": 38106, "atom2_serNum": 38357, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///C/41/N", "atom2_id": "///C/74/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3980, "atom1_serNum": 38186, "atom2_serNum": 38201, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///C/51/O", "atom2_id": "///C/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3981, "atom1_serNum": 38199, "atom2_serNum": 38238, "donAcc_type": "acceptable", "distance": 3.422, "atom1_id": "///C/52/OG1", "atom2_id": "///C/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3982, "atom1_serNum": 38204, "atom2_serNum": 38221, "donAcc_type": "standard", "distance": 3.568, "atom1_id": "///C/53/O", "atom2_id": "///C/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3983, "atom1_serNum": 38217, "atom2_serNum": 38230, "donAcc_type": "standard", "distance": 3.375, "atom1_id": "///C/55/O", "atom2_id": "///C/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3984, "atom1_serNum": 38233, "atom2_serNum": 38249, "donAcc_type": "standard", "distance": 3.260, "atom1_id": "///C/57/O", "atom2_id": "///C/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3985, "atom1_serNum": 38241, "atom2_serNum": 38257, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///C/58/O", "atom2_id": "///C/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3986, "atom1_serNum": 38246, "atom2_serNum": 38261, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///C/59/O", "atom2_id": "///C/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3987, "atom1_serNum": 38260, "atom2_serNum": 38291, "donAcc_type": "standard", "distance": 2.612, "atom1_id": "///C/61/O", "atom2_id": "///C/65/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3988, "atom1_serNum": 38264, "atom2_serNum": 38480, "donAcc_type": "acceptable", "distance": 2.240, "atom1_id": "///C/62/O", "atom2_id": "///C/88/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3989, "atom1_serNum": 38272, "atom2_serNum": 38282, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///C/63/O", "atom2_id": "///C/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3990, "atom1_serNum": 38272, "atom2_serNum": 38480, "donAcc_type": "acceptable", "distance": 2.449, "atom1_id": "///C/63/O", "atom2_id": "///C/88/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3991, "atom1_serNum": 38281, "atom2_serNum": 57787, "donAcc_type": "standard", "distance": 3.619, "atom1_id": "///C/64/O", "atom2_id": "///P/50/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3992, "atom1_serNum": 38285, "atom2_serNum": 38462, "donAcc_type": "questionable", "distance": 3.105, "atom1_id": "///C/65/O", "atom2_id": "///C/86/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 3993, "atom1_serNum": 38285, "atom2_serNum": 38475, "donAcc_type": "standard", "distance": 3.581, "atom1_id": "///C/65/O", "atom2_id": "///C/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 3994, "atom1_serNum": 38289, "atom2_serNum": 57774, "donAcc_type": "acceptable", "distance": 2.837, "atom1_id": "///C/65/NE", "atom2_id": "///P/48/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3995, "atom1_serNum": 38291, "atom2_serNum": 57795, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///C/65/NH1", "atom2_id": "///P/51/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3996, "atom1_serNum": 38292, "atom2_serNum": 57760, "donAcc_type": "standard", "distance": 2.502, "atom1_id": "///C/65/NH2", "atom2_id": "///P/46/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3997, "atom1_serNum": 38292, "atom2_serNum": 57795, "donAcc_type": "standard", "distance": 2.516, "atom1_id": "///C/65/NH2", "atom2_id": "///P/51/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3998, "atom1_serNum": 38300, "atom2_serNum": 38462, "donAcc_type": "standard", "distance": 3.272, "atom1_id": "///C/67/N", "atom2_id": "///C/86/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 3999, "atom1_serNum": 38303, "atom2_serNum": 38442, "donAcc_type": "questionable", "distance": 2.984, "atom1_id": "///C/67/O", "atom2_id": "///C/84/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4000, "atom1_serNum": 38303, "atom2_serNum": 38459, "donAcc_type": "standard", "distance": 3.501, "atom1_id": "///C/67/O", "atom2_id": "///C/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4001, "atom1_serNum": 38319, "atom2_serNum": 38438, "donAcc_type": "standard", "distance": 3.660, "atom1_id": "///C/68/OE2", "atom2_id": "///C/83/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4002, "atom1_serNum": 38323, "atom2_serNum": 38439, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///C/69/O", "atom2_id": "///C/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4003, "atom1_serNum": 38332, "atom2_serNum": 38406, "donAcc_type": "acceptable", "distance": 3.001, "atom1_id": "///C/70/OG", "atom2_id": "///C/80/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4004, "atom1_serNum": 38332, "atom2_serNum": 38422, "donAcc_type": "acceptable", "distance": 3.326, "atom1_id": "///C/70/OG", "atom2_id": "///C/82/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4005, "atom1_serNum": 38332, "atom2_serNum": 58356, "donAcc_type": "acceptable", "distance": 3.317, "atom1_id": "///C/70/OG", "atom2_id": "///P/128/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4006, "atom1_serNum": 38333, "atom2_serNum": 38422, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///C/71/N", "atom2_id": "///C/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4007, "atom1_serNum": 38336, "atom2_serNum": 38354, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///C/71/O", "atom2_id": "///C/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4008, "atom1_serNum": 38336, "atom2_serNum": 38362, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///C/71/O", "atom2_id": "///C/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4009, "atom1_serNum": 38344, "atom2_serNum": 38365, "donAcc_type": "questionable", "distance": 3.027, "atom1_id": "///C/72/O", "atom2_id": "///C/75/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4010, "atom1_serNum": 38395, "atom2_serNum": 38429, "donAcc_type": "standard", "distance": 2.365, "atom1_id": "///C/78/OE2", "atom2_id": "///C/82/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4011, "atom1_serNum": 38411, "atom2_serNum": 38614, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///C/81/O", "atom2_id": "///C/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4012, "atom1_serNum": 38411, "atom2_serNum": 38619, "donAcc_type": "acceptable", "distance": 2.600, "atom1_id": "///C/81/O", "atom2_id": "///C/106/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4013, "atom1_serNum": 38429, "atom2_serNum": 39310, "donAcc_type": "standard", "distance": 2.346, "atom1_id": "///C/82/NH2", "atom2_id": "///C/189/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4014, "atom1_serNum": 38430, "atom2_serNum": 38601, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///C/83/N", "atom2_id": "///C/104/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4015, "atom1_serNum": 38433, "atom2_serNum": 38598, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///C/83/O", "atom2_id": "///C/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4016, "atom1_serNum": 38450, "atom2_serNum": 38589, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///C/85/N", "atom2_id": "///C/102/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4017, "atom1_serNum": 38453, "atom2_serNum": 38576, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///C/85/O", "atom2_id": "///C/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4018, "atom1_serNum": 38453, "atom2_serNum": 38586, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///C/85/O", "atom2_id": "///C/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4019, "atom1_serNum": 38467, "atom2_serNum": 38560, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///C/87/N", "atom2_id": "///C/99/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4020, "atom1_serNum": 38470, "atom2_serNum": 38557, "donAcc_type": "standard", "distance": 2.643, "atom1_id": "///C/87/O", "atom2_id": "///C/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4021, "atom1_serNum": 38478, "atom2_serNum": 38480, "donAcc_type": "acceptable", "distance": 2.899, "atom1_id": "///C/88/O", "atom2_id": "///C/88/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4022, "atom1_serNum": 38482, "atom2_serNum": 38545, "donAcc_type": "standard", "distance": 3.304, "atom1_id": "///C/89/N", "atom2_id": "///C/97/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4023, "atom1_serNum": 38490, "atom2_serNum": 39564, "donAcc_type": "standard", "distance": 3.271, "atom1_id": "///C/89/OE2", "atom2_id": "///C/220/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4024, "atom1_serNum": 38494, "atom2_serNum": 38542, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///C/90/O", "atom2_id": "///C/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4025, "atom1_serNum": 38506, "atom2_serNum": 38531, "donAcc_type": "standard", "distance": 3.429, "atom1_id": "///C/92/N", "atom2_id": "///C/95/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4026, "atom1_serNum": 38553, "atom2_serNum": 39664, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///C/98/O", "atom2_id": "///C/232/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4027, "atom1_serNum": 38590, "atom2_serNum": 39518, "donAcc_type": "standard", "distance": 3.490, "atom1_id": "///C/103/N", "atom2_id": "///C/215/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4028, "atom1_serNum": 38593, "atom2_serNum": 39515, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///C/103/O", "atom2_id": "///C/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4029, "atom1_serNum": 38606, "atom2_serNum": 39498, "donAcc_type": "standard", "distance": 3.523, "atom1_id": "///C/105/N", "atom2_id": "///C/213/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4030, "atom1_serNum": 38617, "atom2_serNum": 38649, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///C/106/O", "atom2_id": "///C/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4031, "atom1_serNum": 38621, "atom2_serNum": 58374, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///C/107/N", "atom2_id": "///P/130/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4032, "atom1_serNum": 38624, "atom2_serNum": 38657, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///C/107/O", "atom2_id": "///C/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4033, "atom1_serNum": 38630, "atom2_serNum": 58378, "donAcc_type": "standard", "distance": 3.785, "atom1_id": "///C/107/NH1", "atom2_id": "///P/131/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4034, "atom1_serNum": 38635, "atom2_serNum": 38663, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///C/108/O", "atom2_id": "///C/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4035, "atom1_serNum": 38635, "atom2_serNum": 38668, "donAcc_type": "acceptable", "distance": 3.092, "atom1_id": "///C/108/O", "atom2_id": "///C/112/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4036, "atom1_serNum": 38643, "atom2_serNum": 38668, "donAcc_type": "acceptable", "distance": 2.826, "atom1_id": "///C/109/O", "atom2_id": "///C/112/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4037, "atom1_serNum": 38643, "atom2_serNum": 38669, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///C/109/O", "atom2_id": "///C/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4038, "atom1_serNum": 38652, "atom2_serNum": 38677, "donAcc_type": "standard", "distance": 3.456, "atom1_id": "///C/110/O", "atom2_id": "///C/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4039, "atom1_serNum": 38672, "atom2_serNum": 38684, "donAcc_type": "standard", "distance": 3.230, "atom1_id": "///C/113/O", "atom2_id": "///C/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4040, "atom1_serNum": 38672, "atom2_serNum": 38723, "donAcc_type": "questionable", "distance": 3.256, "atom1_id": "///C/113/O", "atom2_id": "///C/118/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4041, "atom1_serNum": 38684, "atom2_serNum": 38723, "donAcc_type": "standard", "distance": 3.155, "atom1_id": "///C/115/N", "atom2_id": "///C/118/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4042, "atom1_serNum": 38692, "atom2_serNum": 38930, "donAcc_type": "questionable", "distance": 2.931, "atom1_id": "///C/115/NZ", "atom2_id": "///C/144/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 4043, "atom1_serNum": 38705, "atom2_serNum": 39016, "donAcc_type": "acceptable", "distance": 3.403, "atom1_id": "///C/117/O", "atom2_id": "///C/154/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4044, "atom1_serNum": 38724, "atom2_serNum": 38918, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///C/118/NE2", "atom2_id": "///C/143/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4045, "atom1_serNum": 38725, "atom2_serNum": 38920, "donAcc_type": "acceptable", "distance": 3.744, "atom1_id": "///C/119/N", "atom2_id": "///C/143/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4046, "atom1_serNum": 38728, "atom2_serNum": 38730, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///C/119/O", "atom2_id": "///C/119/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4047, "atom1_serNum": 38728, "atom2_serNum": 38915, "donAcc_type": "standard", "distance": 3.809, "atom1_id": "///C/119/O", "atom2_id": "///C/143/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4048, "atom1_serNum": 38740, "atom2_serNum": 38903, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///C/121/N", "atom2_id": "///C/141/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4049, "atom1_serNum": 38743, "atom2_serNum": 38900, "donAcc_type": "standard", "distance": 3.407, "atom1_id": "///C/121/O", "atom2_id": "///C/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4050, "atom1_serNum": 38751, "atom2_serNum": 39113, "donAcc_type": "standard", "distance": 2.729, "atom1_id": "///C/122/O", "atom2_id": "///C/165/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4051, "atom1_serNum": 38757, "atom2_serNum": 38890, "donAcc_type": "standard", "distance": 3.768, "atom1_id": "///C/123/N", "atom2_id": "///C/139/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4052, "atom1_serNum": 38760, "atom2_serNum": 38887, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///C/123/O", "atom2_id": "///C/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4053, "atom1_serNum": 38765, "atom2_serNum": 38768, "donAcc_type": "acceptable", "distance": 2.492, "atom1_id": "///C/124/O", "atom2_id": "///C/124/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4054, "atom1_serNum": 38772, "atom2_serNum": 38871, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///C/125/N", "atom2_id": "///C/137/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4055, "atom1_serNum": 38775, "atom2_serNum": 38868, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///C/125/O", "atom2_id": "///C/137/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4056, "atom1_serNum": 38787, "atom2_serNum": 38852, "donAcc_type": "standard", "distance": 3.288, "atom1_id": "///C/127/N", "atom2_id": "///C/135/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4057, "atom1_serNum": 38790, "atom2_serNum": 38852, "donAcc_type": "questionable", "distance": 3.276, "atom1_id": "///C/127/O", "atom2_id": "///C/135/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4058, "atom1_serNum": 38808, "atom2_serNum": 38820, "donAcc_type": "acceptable", "distance": 2.818, "atom1_id": "///C/129/OG1", "atom2_id": "///C/131/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4059, "atom1_serNum": 38808, "atom2_serNum": 38823, "donAcc_type": "acceptable", "distance": 2.559, "atom1_id": "///C/129/OG1", "atom2_id": "///C/131/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4060, "atom1_serNum": 38808, "atom2_serNum": 38832, "donAcc_type": "acceptable", "distance": 3.483, "atom1_id": "///C/129/OG1", "atom2_id": "///C/133/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4061, "atom1_serNum": 38817, "atom2_serNum": 38823, "donAcc_type": "standard", "distance": 2.679, "atom1_id": "///C/131/N", "atom2_id": "///C/131/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4062, "atom1_serNum": 38820, "atom2_serNum": 38829, "donAcc_type": "standard", "distance": 2.678, "atom1_id": "///C/131/O", "atom2_id": "///C/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4063, "atom1_serNum": 38828, "atom2_serNum": 39550, "donAcc_type": "questionable", "distance": 3.259, "atom1_id": "///C/132/O", "atom2_id": "///C/219/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4064, "atom1_serNum": 38841, "atom2_serNum": 39550, "donAcc_type": "standard", "distance": 3.237, "atom1_id": "///C/134/N", "atom2_id": "///C/219/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4065, "atom1_serNum": 38844, "atom2_serNum": 39539, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///C/134/O", "atom2_id": "///C/218/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4066, "atom1_serNum": 38857, "atom2_serNum": 39525, "donAcc_type": "standard", "distance": 3.320, "atom1_id": "///C/136/N", "atom2_id": "///C/216/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4067, "atom1_serNum": 38876, "atom2_serNum": 39509, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///C/138/N", "atom2_id": "///C/214/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4068, "atom1_serNum": 38893, "atom2_serNum": 39480, "donAcc_type": "standard", "distance": 3.148, "atom1_id": "///C/140/N", "atom2_id": "///C/211/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4069, "atom1_serNum": 38896, "atom2_serNum": 39477, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///C/140/O", "atom2_id": "///C/211/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4070, "atom1_serNum": 38907, "atom2_serNum": 39452, "donAcc_type": "standard", "distance": 3.475, "atom1_id": "///C/142/O", "atom2_id": "///C/208/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4071, "atom1_serNum": 38920, "atom2_serNum": 39014, "donAcc_type": "acceptable", "distance": 3.113, "atom1_id": "///C/143/OG1", "atom2_id": "///C/154/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4072, "atom1_serNum": 38940, "atom2_serNum": 38974, "donAcc_type": "standard", "distance": 3.136, "atom1_id": "///C/146/N", "atom2_id": "///C/149/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4073, "atom1_serNum": 38943, "atom2_serNum": 38967, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///C/146/O", "atom2_id": "///C/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4074, "atom1_serNum": 38958, "atom2_serNum": 78131, "donAcc_type": "standard", "distance": 2.359, "atom1_id": "///C/147/ND2", "atom2_id": "///z/300/OP1", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 4075, "atom1_serNum": 38959, "atom2_serNum": 38965, "donAcc_type": "standard", "distance": 2.653, "atom1_id": "///C/148/N", "atom2_id": "///C/148/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4076, "atom1_serNum": 38962, "atom2_serNum": 61647, "donAcc_type": "standard", "distance": 3.859, "atom1_id": "///C/148/O", "atom2_id": "///S/127/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4077, "atom1_serNum": 38975, "atom2_serNum": 38987, "donAcc_type": "standard", "distance": 3.140, "atom1_id": "///C/149/NE2", "atom2_id": "///C/151/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4078, "atom1_serNum": 38979, "atom2_serNum": 38995, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///C/150/O", "atom2_id": "///C/152/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4079, "atom1_serNum": 39007, "atom2_serNum": 39016, "donAcc_type": "acceptable", "distance": 2.451, "atom1_id": "///C/153/O", "atom2_id": "///C/154/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4080, "atom1_serNum": 39014, "atom2_serNum": 39016, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///C/154/O", "atom2_id": "///C/154/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4081, "atom1_serNum": 39034, "atom2_serNum": 39069, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///C/157/N", "atom2_id": "///C/160/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4082, "atom1_serNum": 39037, "atom2_serNum": 39071, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///C/157/O", "atom2_id": "///C/161/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4083, "atom1_serNum": 39046, "atom2_serNum": 39078, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///C/158/O", "atom2_id": "///C/162/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4084, "atom1_serNum": 39056, "atom2_serNum": 39089, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///C/159/O", "atom2_id": "///C/163/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4085, "atom1_serNum": 39065, "atom2_serNum": 39098, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///C/160/O", "atom2_id": "///C/164/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4086, "atom1_serNum": 39074, "atom2_serNum": 39106, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///C/161/O", "atom2_id": "///C/165/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4087, "atom1_serNum": 39081, "atom2_serNum": 39117, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///C/162/O", "atom2_id": "///C/166/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4088, "atom1_serNum": 39092, "atom2_serNum": 39126, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///C/163/O", "atom2_id": "///C/167/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4089, "atom1_serNum": 39101, "atom2_serNum": 39135, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///C/164/O", "atom2_id": "///C/168/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4090, "atom1_serNum": 39109, "atom2_serNum": 39143, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///C/165/O", "atom2_id": "///C/169/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4091, "atom1_serNum": 39120, "atom2_serNum": 39151, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///C/166/O", "atom2_id": "///C/170/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4092, "atom1_serNum": 39129, "atom2_serNum": 39160, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///C/167/O", "atom2_id": "///C/171/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4093, "atom1_serNum": 39138, "atom2_serNum": 39168, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///C/168/O", "atom2_id": "///C/172/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4094, "atom1_serNum": 39146, "atom2_serNum": 39176, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///C/169/O", "atom2_id": "///C/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4095, "atom1_serNum": 39154, "atom2_serNum": 39183, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///C/170/O", "atom2_id": "///C/174/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4096, "atom1_serNum": 39163, "atom2_serNum": 39194, "donAcc_type": "standard", "distance": 3.324, "atom1_id": "///C/171/O", "atom2_id": "///C/175/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4097, "atom1_serNum": 39179, "atom2_serNum": 39210, "donAcc_type": "standard", "distance": 3.921, "atom1_id": "///C/173/O", "atom2_id": "///C/177/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4098, "atom1_serNum": 39186, "atom2_serNum": 39224, "donAcc_type": "acceptable", "distance": 3.389, "atom1_id": "///C/174/O", "atom2_id": "///C/178/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4099, "atom1_serNum": 39190, "atom2_serNum": 39201, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///C/174/NE", "atom2_id": "///C/175/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4100, "atom1_serNum": 39193, "atom2_serNum": 39364, "donAcc_type": "standard", "distance": 3.533, "atom1_id": "///C/174/NH2", "atom2_id": "///C/196/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4101, "atom1_serNum": 39206, "atom2_serNum": 39226, "donAcc_type": "standard", "distance": 3.372, "atom1_id": "///C/176/O", "atom2_id": "///C/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4102, "atom1_serNum": 39206, "atom2_serNum": 39229, "donAcc_type": "questionable", "distance": 2.918, "atom1_id": "///C/176/O", "atom2_id": "///C/179/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4103, "atom1_serNum": 39226, "atom2_serNum": 39232, "donAcc_type": "standard", "distance": 2.733, "atom1_id": "///C/179/N", "atom2_id": "///C/179/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4104, "atom1_serNum": 39233, "atom2_serNum": 39267, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///C/179/ND2", "atom2_id": "///C/183/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4105, "atom1_serNum": 39234, "atom2_serNum": 39240, "donAcc_type": "standard", "distance": 2.656, "atom1_id": "///C/180/N", "atom2_id": "///C/180/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4106, "atom1_serNum": 39237, "atom2_serNum": 39268, "donAcc_type": "standard", "distance": 3.576, "atom1_id": "///C/180/O", "atom2_id": "///C/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4107, "atom1_serNum": 39245, "atom2_serNum": 39275, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///C/181/O", "atom2_id": "///C/185/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4108, "atom1_serNum": 39258, "atom2_serNum": 39645, "donAcc_type": "standard", "distance": 3.400, "atom1_id": "///C/182/NZ", "atom2_id": "///C/230/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4109, "atom1_serNum": 39262, "atom2_serNum": 39290, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///C/183/O", "atom2_id": "///C/187/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4110, "atom1_serNum": 39271, "atom2_serNum": 39299, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///C/184/O", "atom2_id": "///C/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4111, "atom1_serNum": 39278, "atom2_serNum": 39299, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///C/185/O", "atom2_id": "///C/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4112, "atom1_serNum": 39278, "atom2_serNum": 39307, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///C/185/O", "atom2_id": "///C/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4113, "atom1_serNum": 39285, "atom2_serNum": 39307, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///C/186/O", "atom2_id": "///C/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4114, "atom1_serNum": 39293, "atom2_serNum": 39318, "donAcc_type": "questionable", "distance": 3.054, "atom1_id": "///C/187/O", "atom2_id": "///C/190/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4115, "atom1_serNum": 39293, "atom2_serNum": 39335, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///C/187/O", "atom2_id": "///C/192/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4116, "atom1_serNum": 39322, "atom2_serNum": 39328, "donAcc_type": "standard", "distance": 2.540, "atom1_id": "///C/191/N", "atom2_id": "///C/191/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4117, "atom1_serNum": 39325, "atom2_serNum": 39348, "donAcc_type": "standard", "distance": 2.590, "atom1_id": "///C/191/O", "atom2_id": "///C/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4118, "atom1_serNum": 39333, "atom2_serNum": 39357, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///C/192/O", "atom2_id": "///C/196/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4119, "atom1_serNum": 39339, "atom2_serNum": 39365, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///C/193/O", "atom2_id": "///C/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4120, "atom1_serNum": 39347, "atom2_serNum": 39373, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///C/194/O", "atom2_id": "///C/198/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4121, "atom1_serNum": 39351, "atom2_serNum": 39382, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///C/195/O", "atom2_id": "///C/199/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4122, "atom1_serNum": 39360, "atom2_serNum": 39391, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///C/196/O", "atom2_id": "///C/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4123, "atom1_serNum": 39368, "atom2_serNum": 39396, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///C/197/O", "atom2_id": "///C/201/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4124, "atom1_serNum": 39380, "atom2_serNum": 39410, "donAcc_type": "standard", "distance": 2.688, "atom1_id": "///C/198/OE1", "atom2_id": "///C/202/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4125, "atom1_serNum": 39380, "atom2_serNum": 39447, "donAcc_type": "questionable", "distance": 2.723, "atom1_id": "///C/198/OE1", "atom2_id": "///C/207/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4126, "atom1_serNum": 39381, "atom2_serNum": 39410, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///C/198/OE2", "atom2_id": "///C/202/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4127, "atom1_serNum": 39385, "atom2_serNum": 39402, "donAcc_type": "standard", "distance": 3.735, "atom1_id": "///C/199/O", "atom2_id": "///C/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4128, "atom1_serNum": 39428, "atom2_serNum": 39444, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///C/205/O", "atom2_id": "///C/207/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4129, "atom1_serNum": 39452, "atom2_serNum": 39458, "donAcc_type": "acceptable", "distance": 3.205, "atom1_id": "///C/208/N", "atom2_id": "///C/208/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 4130, "atom1_serNum": 39468, "atom2_serNum": 39470, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///C/209/OD1", "atom2_id": "///C/210/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4131, "atom1_serNum": 39600, "atom2_serNum": 39609, "donAcc_type": "standard", "distance": 3.619, "atom1_id": "///C/224/OE2", "atom2_id": "///C/226/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4132, "atom1_serNum": 39604, "atom2_serNum": 39630, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///C/225/O", "atom2_id": "///C/229/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4133, "atom1_serNum": 39612, "atom2_serNum": 39638, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///C/226/O", "atom2_id": "///C/230/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4134, "atom1_serNum": 39616, "atom2_serNum": 39647, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///C/227/O", "atom2_id": "///C/231/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4135, "atom1_serNum": 39625, "atom2_serNum": 39655, "donAcc_type": "standard", "distance": 3.349, "atom1_id": "///C/228/O", "atom2_id": "///C/232/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4136, "atom1_serNum": 39691, "atom2_serNum": 39786, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///D/60/O", "atom2_id": "///D/71/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4137, "atom1_serNum": 39696, "atom2_serNum": 39945, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///D/60/NE1", "atom2_id": "///D/90/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4138, "atom1_serNum": 39696, "atom2_serNum": 39961, "donAcc_type": "standard", "distance": 2.494, "atom1_id": "///D/60/NE1", "atom2_id": "///D/92/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4139, "atom1_serNum": 39717, "atom2_serNum": 39946, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///D/63/N", "atom2_id": "///D/90/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4140, "atom1_serNum": 39724, "atom2_serNum": 39946, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///D/64/N", "atom2_id": "///D/90/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4141, "atom1_serNum": 39727, "atom2_serNum": 39748, "donAcc_type": "standard", "distance": 3.054, "atom1_id": "///D/64/O", "atom2_id": "///D/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4142, "atom1_serNum": 39727, "atom2_serNum": 39752, "donAcc_type": "standard", "distance": 3.345, "atom1_id": "///D/64/O", "atom2_id": "///D/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4143, "atom1_serNum": 39734, "atom2_serNum": 39763, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///D/65/O", "atom2_id": "///D/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4144, "atom1_serNum": 39743, "atom2_serNum": 39771, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///D/66/O", "atom2_id": "///D/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4145, "atom1_serNum": 39751, "atom2_serNum": 39778, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///D/67/O", "atom2_id": "///D/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4146, "atom1_serNum": 39755, "atom2_serNum": 39787, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///D/68/O", "atom2_id": "///D/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4147, "atom1_serNum": 39766, "atom2_serNum": 39803, "donAcc_type": "standard", "distance": 3.646, "atom1_id": "///D/69/O", "atom2_id": "///D/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4148, "atom1_serNum": 39820, "atom2_serNum": 39860, "donAcc_type": "standard", "distance": 3.964, "atom1_id": "///D/76/N", "atom2_id": "///D/80/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4149, "atom1_serNum": 39834, "atom2_serNum": 39843, "donAcc_type": "acceptable", "distance": 3.402, "atom1_id": "///D/77/OG", "atom2_id": "///D/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4150, "atom1_serNum": 39838, "atom2_serNum": 39869, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///D/78/O", "atom2_id": "///D/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4151, "atom1_serNum": 39846, "atom2_serNum": 39881, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///D/79/O", "atom2_id": "///D/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4152, "atom1_serNum": 39852, "atom2_serNum": 39859, "donAcc_type": "standard", "distance": 2.597, "atom1_id": "///D/80/N", "atom2_id": "///D/80/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4153, "atom1_serNum": 39855, "atom2_serNum": 39889, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///D/80/O", "atom2_id": "///D/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4154, "atom1_serNum": 39864, "atom2_serNum": 39900, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///D/81/O", "atom2_id": "///D/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4155, "atom1_serNum": 39864, "atom2_serNum": 39906, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///D/81/O", "atom2_id": "///D/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4156, "atom1_serNum": 39872, "atom2_serNum": 39900, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///D/82/O", "atom2_id": "///D/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4157, "atom1_serNum": 39884, "atom2_serNum": 64901, "donAcc_type": "standard", "distance": 3.123, "atom1_id": "///D/83/O", "atom2_id": "///W/15/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4158, "atom1_serNum": 39892, "atom2_serNum": 39905, "donAcc_type": "acceptable", "distance": 2.544, "atom1_id": "///D/84/O", "atom2_id": "///D/85/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4159, "atom1_serNum": 39903, "atom2_serNum": 39905, "donAcc_type": "acceptable", "distance": 2.787, "atom1_id": "///D/85/O", "atom2_id": "///D/85/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4160, "atom1_serNum": 39905, "atom2_serNum": 64904, "donAcc_type": "acceptable", "distance": 3.084, "atom1_id": "///D/85/OG", "atom2_id": "///W/15/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4161, "atom1_serNum": 39905, "atom2_serNum": 64993, "donAcc_type": "acceptable", "distance": 3.091, "atom1_id": "///D/85/OG", "atom2_id": "///W/28/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4162, "atom1_serNum": 39905, "atom2_serNum": 65018, "donAcc_type": "acceptable", "distance": 3.012, "atom1_id": "///D/85/OG", "atom2_id": "///W/31/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4163, "atom1_serNum": 39941, "atom2_serNum": 39962, "donAcc_type": "standard", "distance": 3.358, "atom1_id": "///D/90/O", "atom2_id": "///D/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4164, "atom1_serNum": 39950, "atom2_serNum": 39978, "donAcc_type": "standard", "distance": 3.960, "atom1_id": "///D/91/O", "atom2_id": "///D/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4165, "atom1_serNum": 39952, "atom2_serNum": 40445, "donAcc_type": "acceptable", "distance": 3.019, "atom1_id": "///D/91/OG", "atom2_id": "///D/156/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4166, "atom1_serNum": 39953, "atom2_serNum": 39960, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///D/92/N", "atom2_id": "///D/92/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4167, "atom1_serNum": 39956, "atom2_serNum": 39986, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///D/92/O", "atom2_id": "///D/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4168, "atom1_serNum": 39965, "atom2_serNum": 39997, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///D/93/O", "atom2_id": "///D/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4169, "atom1_serNum": 39973, "atom2_serNum": 40008, "donAcc_type": "standard", "distance": 2.539, "atom1_id": "///D/94/O", "atom2_id": "///D/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4170, "atom1_serNum": 39985, "atom2_serNum": 40471, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///D/95/OD2", "atom2_id": "///D/159/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4171, "atom1_serNum": 40019, "atom2_serNum": 40031, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///D/99/O", "atom2_id": "///D/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4172, "atom1_serNum": 40042, "atom2_serNum": 40267, "donAcc_type": "standard", "distance": 3.226, "atom1_id": "///D/103/O", "atom2_id": "///D/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4173, "atom1_serNum": 40048, "atom2_serNum": 40054, "donAcc_type": "standard", "distance": 2.527, "atom1_id": "///D/104/N", "atom2_id": "///D/104/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4174, "atom1_serNum": 40056, "atom2_serNum": 40257, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///D/105/N", "atom2_id": "///D/129/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4175, "atom1_serNum": 40059, "atom2_serNum": 40254, "donAcc_type": "standard", "distance": 3.293, "atom1_id": "///D/105/O", "atom2_id": "///D/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4176, "atom1_serNum": 40072, "atom2_serNum": 40239, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///D/107/N", "atom2_id": "///D/127/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4177, "atom1_serNum": 40083, "atom2_serNum": 40236, "donAcc_type": "standard", "distance": 3.534, "atom1_id": "///D/108/O", "atom2_id": "///D/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4178, "atom1_serNum": 40097, "atom2_serNum": 40225, "donAcc_type": "standard", "distance": 3.406, "atom1_id": "///D/110/N", "atom2_id": "///D/125/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4179, "atom1_serNum": 40100, "atom2_serNum": 40112, "donAcc_type": "standard", "distance": 3.086, "atom1_id": "///D/110/O", "atom2_id": "///D/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4180, "atom1_serNum": 40100, "atom2_serNum": 40222, "donAcc_type": "standard", "distance": 3.450, "atom1_id": "///D/110/O", "atom2_id": "///D/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4181, "atom1_serNum": 40112, "atom2_serNum": 40203, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///D/112/N", "atom2_id": "///D/123/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4182, "atom1_serNum": 40115, "atom2_serNum": 40200, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///D/112/O", "atom2_id": "///D/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4183, "atom1_serNum": 40126, "atom2_serNum": 40181, "donAcc_type": "standard", "distance": 2.500, "atom1_id": "///D/113/OE1", "atom2_id": "///D/120/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4184, "atom1_serNum": 40128, "atom2_serNum": 40185, "donAcc_type": "standard", "distance": 2.554, "atom1_id": "///D/114/N", "atom2_id": "///D/121/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4185, "atom1_serNum": 40131, "atom2_serNum": 40182, "donAcc_type": "standard", "distance": 2.422, "atom1_id": "///D/114/O", "atom2_id": "///D/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4186, "atom1_serNum": 40145, "atom2_serNum": 40149, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///D/115/NE2", "atom2_id": "///D/116/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4187, "atom1_serNum": 40146, "atom2_serNum": 40172, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///D/116/N", "atom2_id": "///D/119/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4188, "atom1_serNum": 40151, "atom2_serNum": 40172, "donAcc_type": "acceptable", "distance": 3.127, "atom1_id": "///D/116/OG1", "atom2_id": "///D/119/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4189, "atom1_serNum": 40192, "atom2_serNum": 40196, "donAcc_type": "standard", "distance": 3.624, "atom1_id": "///D/121/NH2", "atom2_id": "///D/122/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4190, "atom1_serNum": 40211, "atom2_serNum": 40361, "donAcc_type": "standard", "distance": 3.118, "atom1_id": "///D/124/N", "atom2_id": "///D/144/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4191, "atom1_serNum": 40214, "atom2_serNum": 40358, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///D/124/O", "atom2_id": "///D/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4192, "atom1_serNum": 40231, "atom2_serNum": 40346, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///D/126/N", "atom2_id": "///D/142/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4193, "atom1_serNum": 40234, "atom2_serNum": 40343, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///D/126/O", "atom2_id": "///D/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4194, "atom1_serNum": 40247, "atom2_serNum": 40335, "donAcc_type": "standard", "distance": 3.269, "atom1_id": "///D/128/N", "atom2_id": "///D/140/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4195, "atom1_serNum": 40250, "atom2_serNum": 40332, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///D/128/O", "atom2_id": "///D/140/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4196, "atom1_serNum": 40259, "atom2_serNum": 40323, "donAcc_type": "standard", "distance": 3.168, "atom1_id": "///D/130/N", "atom2_id": "///D/138/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4197, "atom1_serNum": 40262, "atom2_serNum": 40320, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///D/130/O", "atom2_id": "///D/138/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4198, "atom1_serNum": 40271, "atom2_serNum": 40277, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///D/132/N", "atom2_id": "///D/132/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4199, "atom1_serNum": 40274, "atom2_serNum": 40299, "donAcc_type": "standard", "distance": 3.987, "atom1_id": "///D/132/O", "atom2_id": "///D/135/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4200, "atom1_serNum": 40274, "atom2_serNum": 40306, "donAcc_type": "questionable", "distance": 3.125, "atom1_id": "///D/132/O", "atom2_id": "///D/136/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4201, "atom1_serNum": 40274, "atom2_serNum": 40893, "donAcc_type": "questionable", "distance": 2.879, "atom1_id": "///D/132/O", "atom2_id": "///D/216/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4202, "atom1_serNum": 40277, "atom2_serNum": 40303, "donAcc_type": "standard", "distance": 3.343, "atom1_id": "///D/132/OD1", "atom2_id": "///D/136/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4203, "atom1_serNum": 40299, "atom2_serNum": 40901, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///D/135/N", "atom2_id": "///D/217/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4204, "atom1_serNum": 40302, "atom2_serNum": 40508, "donAcc_type": "standard", "distance": 2.653, "atom1_id": "///D/135/O", "atom2_id": "///D/165/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4205, "atom1_serNum": 40316, "atom2_serNum": 40494, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///D/137/O", "atom2_id": "///D/163/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4206, "atom1_serNum": 40324, "atom2_serNum": 40483, "donAcc_type": "standard", "distance": 3.911, "atom1_id": "///D/139/N", "atom2_id": "///D/161/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4207, "atom1_serNum": 40327, "atom2_serNum": 40485, "donAcc_type": "acceptable", "distance": 3.322, "atom1_id": "///D/139/O", "atom2_id": "///D/161/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4208, "atom1_serNum": 40376, "atom2_serNum": 40401, "donAcc_type": "standard", "distance": 3.055, "atom1_id": "///D/146/O", "atom2_id": "///D/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4209, "atom1_serNum": 40385, "atom2_serNum": 40406, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///D/147/O", "atom2_id": "///D/151/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4210, "atom1_serNum": 40392, "atom2_serNum": 40414, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///D/148/O", "atom2_id": "///D/152/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4211, "atom1_serNum": 40397, "atom2_serNum": 40425, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///D/149/O", "atom2_id": "///D/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4212, "atom1_serNum": 40404, "atom2_serNum": 40429, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///D/150/O", "atom2_id": "///D/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4213, "atom1_serNum": 40409, "atom2_serNum": 40434, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///D/151/O", "atom2_id": "///D/155/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4214, "atom1_serNum": 40417, "atom2_serNum": 40442, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///D/152/O", "atom2_id": "///D/156/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4215, "atom1_serNum": 40428, "atom2_serNum": 40450, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///D/153/O", "atom2_id": "///D/157/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4216, "atom1_serNum": 40432, "atom2_serNum": 40458, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///D/154/O", "atom2_id": "///D/158/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4217, "atom1_serNum": 40437, "atom2_serNum": 40463, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///D/155/O", "atom2_id": "///D/159/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4218, "atom1_serNum": 40445, "atom2_serNum": 40472, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///D/156/O", "atom2_id": "///D/160/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4219, "atom1_serNum": 40453, "atom2_serNum": 40480, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///D/157/O", "atom2_id": "///D/161/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4220, "atom1_serNum": 40489, "atom2_serNum": 64989, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///D/162/O", "atom2_id": "///W/27/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4221, "atom1_serNum": 40518, "atom2_serNum": 41116, "donAcc_type": "acceptable", "distance": 3.052, "atom1_id": "///D/166/O", "atom2_id": "///D/247/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4222, "atom1_serNum": 40525, "atom2_serNum": 64859, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///D/166/NH2", "atom2_id": "///W/10/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4223, "atom1_serNum": 40537, "atom2_serNum": 40629, "donAcc_type": "standard", "distance": 2.435, "atom1_id": "///D/168/N", "atom2_id": "///D/179/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4224, "atom1_serNum": 40540, "atom2_serNum": 40616, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///D/168/O", "atom2_id": "///D/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4225, "atom1_serNum": 40540, "atom2_serNum": 40626, "donAcc_type": "standard", "distance": 3.247, "atom1_id": "///D/168/O", "atom2_id": "///D/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4226, "atom1_serNum": 40552, "atom2_serNum": 40599, "donAcc_type": "acceptable", "distance": 2.311, "atom1_id": "///D/169/OH", "atom2_id": "///D/175/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4227, "atom1_serNum": 40556, "atom2_serNum": 40571, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///D/170/O", "atom2_id": "///D/172/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4228, "atom1_serNum": 40567, "atom2_serNum": 66198, "donAcc_type": "standard", "distance": 3.478, "atom1_id": "///D/171/N", "atom2_id": "///X/98/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4229, "atom1_serNum": 40570, "atom2_serNum": 40579, "donAcc_type": "standard", "distance": 3.301, "atom1_id": "///D/171/O", "atom2_id": "///D/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4230, "atom1_serNum": 40570, "atom2_serNum": 66199, "donAcc_type": "standard", "distance": 3.622, "atom1_id": "///D/171/O", "atom2_id": "///X/98/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4231, "atom1_serNum": 40574, "atom2_serNum": 40588, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///D/172/O", "atom2_id": "///D/174/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4232, "atom1_serNum": 40578, "atom2_serNum": 52631, "donAcc_type": "standard", "distance": 3.720, "atom1_id": "///D/172/ND2", "atom2_id": "///K/95/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4233, "atom1_serNum": 40591, "atom2_serNum": 40785, "donAcc_type": "standard", "distance": 3.638, "atom1_id": "///D/174/O", "atom2_id": "///D/200/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4234, "atom1_serNum": 40603, "atom2_serNum": 40785, "donAcc_type": "standard", "distance": 2.396, "atom1_id": "///D/176/O", "atom2_id": "///D/200/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4235, "atom1_serNum": 40619, "atom2_serNum": 40923, "donAcc_type": "standard", "distance": 3.148, "atom1_id": "///D/178/O", "atom2_id": "///D/221/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4236, "atom1_serNum": 40625, "atom2_serNum": 40766, "donAcc_type": "standard", "distance": 3.851, "atom1_id": "///D/178/NE2", "atom2_id": "///D/198/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4237, "atom1_serNum": 40631, "atom2_serNum": 40763, "donAcc_type": "acceptable", "distance": 2.985, "atom1_id": "///D/179/OG1", "atom2_id": "///D/198/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4238, "atom1_serNum": 40631, "atom2_serNum": 40926, "donAcc_type": "acceptable", "distance": 2.593, "atom1_id": "///D/179/OG1", "atom2_id": "///D/221/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4239, "atom1_serNum": 40643, "atom2_serNum": 66179, "donAcc_type": "acceptable", "distance": 3.405, "atom1_id": "///D/181/O", "atom2_id": "///X/96/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4240, "atom1_serNum": 40650, "atom2_serNum": 40662, "donAcc_type": "standard", "distance": 3.177, "atom1_id": "///D/182/O", "atom2_id": "///D/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4241, "atom1_serNum": 40661, "atom2_serNum": 66138, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///D/183/NZ", "atom2_id": "///X/91/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4242, "atom1_serNum": 40661, "atom2_serNum": 66162, "donAcc_type": "standard", "distance": 2.616, "atom1_id": "///D/183/NZ", "atom2_id": "///X/94/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4243, "atom1_serNum": 40662, "atom2_serNum": 40743, "donAcc_type": "standard", "distance": 3.447, "atom1_id": "///D/184/N", "atom2_id": "///D/195/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4244, "atom1_serNum": 40665, "atom2_serNum": 40740, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///D/184/O", "atom2_id": "///D/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4245, "atom1_serNum": 40672, "atom2_serNum": 41110, "donAcc_type": "standard", "distance": 2.582, "atom1_id": "///D/185/O", "atom2_id": "///D/246/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4246, "atom1_serNum": 40676, "atom2_serNum": 40725, "donAcc_type": "standard", "distance": 3.140, "atom1_id": "///D/186/N", "atom2_id": "///D/193/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4247, "atom1_serNum": 40679, "atom2_serNum": 40722, "donAcc_type": "standard", "distance": 3.186, "atom1_id": "///D/186/O", "atom2_id": "///D/193/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4248, "atom1_serNum": 40691, "atom2_serNum": 40710, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///D/188/N", "atom2_id": "///D/191/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4249, "atom1_serNum": 40694, "atom2_serNum": 40701, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///D/188/O", "atom2_id": "///D/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4250, "atom1_serNum": 40694, "atom2_serNum": 40707, "donAcc_type": "standard", "distance": 3.132, "atom1_id": "///D/188/O", "atom2_id": "///D/191/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4251, "atom1_serNum": 40704, "atom2_serNum": 40706, "donAcc_type": "acceptable", "distance": 2.573, "atom1_id": "///D/190/O", "atom2_id": "///D/190/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4252, "atom1_serNum": 40714, "atom2_serNum": 40970, "donAcc_type": "standard", "distance": 3.228, "atom1_id": "///D/192/N", "atom2_id": "///D/227/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4253, "atom1_serNum": 40717, "atom2_serNum": 40967, "donAcc_type": "standard", "distance": 3.209, "atom1_id": "///D/192/O", "atom2_id": "///D/227/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4254, "atom1_serNum": 40729, "atom2_serNum": 40959, "donAcc_type": "standard", "distance": 3.242, "atom1_id": "///D/194/N", "atom2_id": "///D/225/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4255, "atom1_serNum": 40732, "atom2_serNum": 40956, "donAcc_type": "standard", "distance": 3.362, "atom1_id": "///D/194/O", "atom2_id": "///D/225/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4256, "atom1_serNum": 40748, "atom2_serNum": 40940, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///D/196/N", "atom2_id": "///D/223/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4257, "atom1_serNum": 40751, "atom2_serNum": 40937, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///D/196/O", "atom2_id": "///D/223/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4258, "atom1_serNum": 40771, "atom2_serNum": 40790, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///D/199/O", "atom2_id": "///D/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4259, "atom1_serNum": 40771, "atom2_serNum": 40795, "donAcc_type": "acceptable", "distance": 2.713, "atom1_id": "///D/199/O", "atom2_id": "///D/202/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4260, "atom1_serNum": 40778, "atom2_serNum": 52299, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///D/200/O", "atom2_id": "///K/54/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4261, "atom1_serNum": 40797, "atom2_serNum": 40929, "donAcc_type": "standard", "distance": 3.643, "atom1_id": "///D/203/N", "atom2_id": "///D/221/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4262, "atom1_serNum": 40800, "atom2_serNum": 40931, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///D/203/O", "atom2_id": "///D/222/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4263, "atom1_serNum": 40804, "atom2_serNum": 40856, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///D/204/O", "atom2_id": "///D/211/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4264, "atom1_serNum": 40809, "atom2_serNum": 40934, "donAcc_type": "standard", "distance": 3.742, "atom1_id": "///D/205/N", "atom2_id": "///D/222/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4265, "atom1_serNum": 40812, "atom2_serNum": 40954, "donAcc_type": "acceptable", "distance": 2.566, "atom1_id": "///D/205/O", "atom2_id": "///D/224/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4266, "atom1_serNum": 40821, "atom2_serNum": 40954, "donAcc_type": "acceptable", "distance": 3.003, "atom1_id": "///D/206/OG", "atom2_id": "///D/224/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4267, "atom1_serNum": 40825, "atom2_serNum": 40848, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///D/207/O", "atom2_id": "///D/211/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4268, "atom1_serNum": 40830, "atom2_serNum": 40857, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///D/208/O", "atom2_id": "///D/212/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4269, "atom1_serNum": 40837, "atom2_serNum": 40866, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///D/209/O", "atom2_id": "///D/213/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4270, "atom1_serNum": 40844, "atom2_serNum": 40874, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///D/210/O", "atom2_id": "///D/214/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4271, "atom1_serNum": 40851, "atom2_serNum": 40882, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///D/211/O", "atom2_id": "///D/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4272, "atom1_serNum": 40860, "atom2_serNum": 40890, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///D/212/O", "atom2_id": "///D/216/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4273, "atom1_serNum": 40869, "atom2_serNum": 40898, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///D/213/O", "atom2_id": "///D/217/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4274, "atom1_serNum": 40877, "atom2_serNum": 40903, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///D/214/O", "atom2_id": "///D/218/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4275, "atom1_serNum": 40877, "atom2_serNum": 40907, "donAcc_type": "standard", "distance": 3.301, "atom1_id": "///D/214/O", "atom2_id": "///D/219/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4276, "atom1_serNum": 40906, "atom2_serNum": 40915, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///D/218/O", "atom2_id": "///D/220/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4277, "atom1_serNum": 40948, "atom2_serNum": 52328, "donAcc_type": "acceptable", "distance": 3.506, "atom1_id": "///D/223/OH", "atom2_id": "///K/58/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4278, "atom1_serNum": 40981, "atom2_serNum": 40988, "donAcc_type": "standard", "distance": 3.215, "atom1_id": "///D/228/O", "atom2_id": "///D/230/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4279, "atom1_serNum": 40985, "atom2_serNum": 41005, "donAcc_type": "acceptable", "distance": 3.285, "atom1_id": "///D/229/O", "atom2_id": "///D/232/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4280, "atom1_serNum": 40998, "atom2_serNum": 41007, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///D/231/O", "atom2_id": "///D/233/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4281, "atom1_serNum": 41003, "atom2_serNum": 41027, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///D/232/O", "atom2_id": "///D/236/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4282, "atom1_serNum": 41010, "atom2_serNum": 41038, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///D/233/O", "atom2_id": "///D/237/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4283, "atom1_serNum": 41018, "atom2_serNum": 41043, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///D/234/O", "atom2_id": "///D/238/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4284, "atom1_serNum": 41022, "atom2_serNum": 41052, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///D/235/O", "atom2_id": "///D/239/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4285, "atom1_serNum": 41030, "atom2_serNum": 41057, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///D/236/O", "atom2_id": "///D/240/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4286, "atom1_serNum": 41041, "atom2_serNum": 41064, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///D/237/O", "atom2_id": "///D/241/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4287, "atom1_serNum": 41046, "atom2_serNum": 41075, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///D/238/O", "atom2_id": "///D/242/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4288, "atom1_serNum": 41055, "atom2_serNum": 41083, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///D/239/O", "atom2_id": "///D/243/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4289, "atom1_serNum": 41067, "atom2_serNum": 41096, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///D/241/O", "atom2_id": "///D/245/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4290, "atom1_serNum": 41067, "atom2_serNum": 41101, "donAcc_type": "acceptable", "distance": 3.096, "atom1_id": "///D/241/O", "atom2_id": "///D/245/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4291, "atom1_serNum": 41078, "atom2_serNum": 41101, "donAcc_type": "acceptable", "distance": 2.831, "atom1_id": "///D/242/O", "atom2_id": "///D/245/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4292, "atom1_serNum": 41091, "atom2_serNum": 41111, "donAcc_type": "standard", "distance": 3.821, "atom1_id": "///D/244/O", "atom2_id": "///D/247/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4293, "atom1_serNum": 41121, "atom2_serNum": 41136, "donAcc_type": "standard", "distance": 2.688, "atom1_id": "///D/248/O", "atom2_id": "///D/250/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4294, "atom1_serNum": 41129, "atom2_serNum": 64858, "donAcc_type": "acceptable", "distance": 2.986, "atom1_id": "///D/248/OH", "atom2_id": "///W/10/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4295, "atom1_serNum": 41139, "atom2_serNum": 41156, "donAcc_type": "standard", "distance": 3.128, "atom1_id": "///D/250/O", "atom2_id": "///D/252/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4296, "atom1_serNum": 41159, "atom2_serNum": 41178, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///D/252/O", "atom2_id": "///D/255/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4297, "atom1_serNum": 41181, "atom2_serNum": 64913, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///D/255/O", "atom2_id": "///W/16/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4298, "atom1_serNum": 41203, "atom2_serNum": 64913, "donAcc_type": "standard", "distance": 2.518, "atom1_id": "///D/257/O", "atom2_id": "///W/16/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4299, "atom1_serNum": 41216, "atom2_serNum": 41218, "donAcc_type": "standard", "distance": 2.497, "atom1_id": "///D/258/OE1", "atom2_id": "///D/259/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4300, "atom1_serNum": 41221, "atom2_serNum": 41223, "donAcc_type": "acceptable", "distance": 2.976, "atom1_id": "///D/259/O", "atom2_id": "///D/259/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4301, "atom1_serNum": 41228, "atom2_serNum": 41243, "donAcc_type": "standard", "distance": 3.265, "atom1_id": "///D/260/O", "atom2_id": "///D/262/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4302, "atom1_serNum": 41246, "atom2_serNum": 65035, "donAcc_type": "standard", "distance": 3.425, "atom1_id": "///D/262/O", "atom2_id": "///W/33/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4303, "atom1_serNum": 41262, "atom2_serNum": 41293, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///D/264/O", "atom2_id": "///D/268/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4304, "atom1_serNum": 41268, "atom2_serNum": 41302, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///D/265/O", "atom2_id": "///D/269/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4305, "atom1_serNum": 41275, "atom2_serNum": 41313, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///D/266/O", "atom2_id": "///D/270/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4306, "atom1_serNum": 41275, "atom2_serNum": 41318, "donAcc_type": "acceptable", "distance": 2.215, "atom1_id": "///D/266/O", "atom2_id": "///D/270/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4307, "atom1_serNum": 41291, "atom2_serNum": 65051, "donAcc_type": "standard", "distance": 2.447, "atom1_id": "///D/267/OE1", "atom2_id": "///W/35/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4308, "atom1_serNum": 41305, "atom2_serNum": 41328, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///D/269/O", "atom2_id": "///D/272/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4309, "atom1_serNum": 41305, "atom2_serNum": 41338, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///D/269/O", "atom2_id": "///D/273/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4310, "atom1_serNum": 41316, "atom2_serNum": 41346, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///D/270/O", "atom2_id": "///D/274/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4311, "atom1_serNum": 41331, "atom2_serNum": 41353, "donAcc_type": "standard", "distance": 3.263, "atom1_id": "///D/272/O", "atom2_id": "///D/275/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4312, "atom1_serNum": 41331, "atom2_serNum": 41362, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///D/272/O", "atom2_id": "///D/276/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4313, "atom1_serNum": 41367, "atom2_serNum": 41375, "donAcc_type": "acceptable", "distance": 2.803, "atom1_id": "///D/276/OG1", "atom2_id": "///D/277/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4314, "atom1_serNum": 41427, "atom2_serNum": 41459, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///E/6/O", "atom2_id": "///E/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4315, "atom1_serNum": 41433, "atom2_serNum": 41468, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///E/7/O", "atom2_id": "///E/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4316, "atom1_serNum": 41442, "atom2_serNum": 41479, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///E/8/O", "atom2_id": "///E/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4317, "atom1_serNum": 41451, "atom2_serNum": 41486, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///E/9/O", "atom2_id": "///E/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4318, "atom1_serNum": 41462, "atom2_serNum": 41491, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///E/10/O", "atom2_id": "///E/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4319, "atom1_serNum": 41471, "atom2_serNum": 41499, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///E/11/O", "atom2_id": "///E/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4320, "atom1_serNum": 41482, "atom2_serNum": 41503, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///E/12/O", "atom2_id": "///E/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4321, "atom1_serNum": 41489, "atom2_serNum": 41511, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///E/13/O", "atom2_id": "///E/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4322, "atom1_serNum": 41494, "atom2_serNum": 41522, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///E/14/O", "atom2_id": "///E/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4323, "atom1_serNum": 41502, "atom2_serNum": 41531, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///E/15/O", "atom2_id": "///E/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4324, "atom1_serNum": 41506, "atom2_serNum": 41536, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///E/16/O", "atom2_id": "///E/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4325, "atom1_serNum": 41514, "atom2_serNum": 41545, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///E/17/O", "atom2_id": "///E/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4326, "atom1_serNum": 41525, "atom2_serNum": 41553, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///E/18/O", "atom2_id": "///E/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4327, "atom1_serNum": 41534, "atom2_serNum": 41561, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///E/19/O", "atom2_id": "///E/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4328, "atom1_serNum": 41539, "atom2_serNum": 41570, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///E/20/O", "atom2_id": "///E/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4329, "atom1_serNum": 41548, "atom2_serNum": 41581, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///E/21/O", "atom2_id": "///E/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4330, "atom1_serNum": 41556, "atom2_serNum": 41589, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///E/22/O", "atom2_id": "///E/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4331, "atom1_serNum": 41556, "atom2_serNum": 41594, "donAcc_type": "acceptable", "distance": 3.182, "atom1_id": "///E/22/O", "atom2_id": "///E/26/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4332, "atom1_serNum": 41560, "atom2_serNum": 71580, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///E/22/ND2", "atom2_id": "///e/49/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4333, "atom1_serNum": 41564, "atom2_serNum": 41594, "donAcc_type": "acceptable", "distance": 2.650, "atom1_id": "///E/23/O", "atom2_id": "///E/26/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4334, "atom1_serNum": 41564, "atom2_serNum": 41596, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///E/23/O", "atom2_id": "///E/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4335, "atom1_serNum": 41573, "atom2_serNum": 41607, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///E/24/O", "atom2_id": "///E/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4336, "atom1_serNum": 41584, "atom2_serNum": 41616, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///E/25/O", "atom2_id": "///E/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4337, "atom1_serNum": 41605, "atom2_serNum": 53862, "donAcc_type": "questionable", "distance": 2.808, "atom1_id": "///E/27/NH1", "atom2_id": "///L/62/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 4338, "atom1_serNum": 41610, "atom2_serNum": 41629, "donAcc_type": "standard", "distance": 3.877, "atom1_id": "///E/28/O", "atom2_id": "///E/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4339, "atom1_serNum": 41614, "atom2_serNum": 53861, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///E/28/OE1", "atom2_id": "///L/61/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4340, "atom1_serNum": 41615, "atom2_serNum": 53861, "donAcc_type": "standard", "distance": 2.687, "atom1_id": "///E/28/OE2", "atom2_id": "///L/61/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4341, "atom1_serNum": 41619, "atom2_serNum": 41644, "donAcc_type": "questionable", "distance": 2.641, "atom1_id": "///E/29/O", "atom2_id": "///E/32/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4342, "atom1_serNum": 41632, "atom2_serNum": 41815, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///E/31/O", "atom2_id": "///E/54/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4343, "atom1_serNum": 41632, "atom2_serNum": 42230, "donAcc_type": "acceptable", "distance": 3.039, "atom1_id": "///E/31/O", "atom2_id": "///E/107/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4344, "atom1_serNum": 41636, "atom2_serNum": 41839, "donAcc_type": "standard", "distance": 2.569, "atom1_id": "///E/31/OE1", "atom2_id": "///E/57/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4345, "atom1_serNum": 41641, "atom2_serNum": 41805, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///E/32/O", "atom2_id": "///E/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4346, "atom1_serNum": 41649, "atom2_serNum": 41798, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///E/33/O", "atom2_id": "///E/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4347, "atom1_serNum": 41649, "atom2_serNum": 41803, "donAcc_type": "acceptable", "distance": 3.192, "atom1_id": "///E/33/O", "atom2_id": "///E/53/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4348, "atom1_serNum": 41662, "atom2_serNum": 41788, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///E/35/N", "atom2_id": "///E/51/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4349, "atom1_serNum": 41668, "atom2_serNum": 41788, "donAcc_type": "standard", "distance": 3.406, "atom1_id": "///E/36/N", "atom2_id": "///E/51/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4350, "atom1_serNum": 41671, "atom2_serNum": 41785, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///E/36/O", "atom2_id": "///E/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4351, "atom1_serNum": 41679, "atom2_serNum": 41772, "donAcc_type": "standard", "distance": 3.043, "atom1_id": "///E/38/N", "atom2_id": "///E/49/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4352, "atom1_serNum": 41682, "atom2_serNum": 41769, "donAcc_type": "standard", "distance": 3.505, "atom1_id": "///E/38/O", "atom2_id": "///E/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4353, "atom1_serNum": 41695, "atom2_serNum": 41755, "donAcc_type": "standard", "distance": 3.241, "atom1_id": "///E/40/N", "atom2_id": "///E/47/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4354, "atom1_serNum": 41698, "atom2_serNum": 41752, "donAcc_type": "standard", "distance": 3.374, "atom1_id": "///E/40/O", "atom2_id": "///E/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4355, "atom1_serNum": 41698, "atom2_serNum": 41755, "donAcc_type": "questionable", "distance": 3.219, "atom1_id": "///E/40/O", "atom2_id": "///E/47/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4356, "atom1_serNum": 41705, "atom2_serNum": 64698, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///E/40/NH2", "atom2_id": "///V/106/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4357, "atom1_serNum": 41709, "atom2_serNum": 41718, "donAcc_type": "acceptable", "distance": 3.044, "atom1_id": "///E/41/O", "atom2_id": "///E/42/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4358, "atom1_serNum": 41716, "atom2_serNum": 41734, "donAcc_type": "standard", "distance": 3.202, "atom1_id": "///E/42/O", "atom2_id": "///E/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4359, "atom1_serNum": 41718, "atom2_serNum": 41760, "donAcc_type": "acceptable", "distance": 2.603, "atom1_id": "///E/42/OG1", "atom2_id": "///E/47/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4360, "atom1_serNum": 41723, "atom2_serNum": 41732, "donAcc_type": "acceptable", "distance": 2.371, "atom1_id": "///E/43/O", "atom2_id": "///E/44/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4361, "atom1_serNum": 41737, "atom2_serNum": 41759, "donAcc_type": "questionable", "distance": 2.773, "atom1_id": "///E/45/O", "atom2_id": "///E/47/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4362, "atom1_serNum": 41744, "atom2_serNum": 42081, "donAcc_type": "acceptable", "distance": 3.999, "atom1_id": "///E/45/NH2", "atom2_id": "///E/87/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4363, "atom1_serNum": 41745, "atom2_serNum": 42043, "donAcc_type": "standard", "distance": 3.611, "atom1_id": "///E/46/N", "atom2_id": "///E/83/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4364, "atom1_serNum": 41748, "atom2_serNum": 42053, "donAcc_type": "standard", "distance": 3.673, "atom1_id": "///E/46/O", "atom2_id": "///E/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4365, "atom1_serNum": 41752, "atom2_serNum": 41759, "donAcc_type": "standard", "distance": 2.542, "atom1_id": "///E/47/N", "atom2_id": "///E/47/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4366, "atom1_serNum": 41764, "atom2_serNum": 42070, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///E/48/O", "atom2_id": "///E/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4367, "atom1_serNum": 41777, "atom2_serNum": 42073, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///E/50/N", "atom2_id": "///E/87/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4368, "atom1_serNum": 41780, "atom2_serNum": 41793, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///E/50/O", "atom2_id": "///E/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4369, "atom1_serNum": 41796, "atom2_serNum": 42090, "donAcc_type": "questionable", "distance": 2.856, "atom1_id": "///E/52/O", "atom2_id": "///E/89/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4370, "atom1_serNum": 41796, "atom2_serNum": 42105, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///E/52/O", "atom2_id": "///E/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4371, "atom1_serNum": 41850, "atom2_serNum": 41859, "donAcc_type": "standard", "distance": 3.262, "atom1_id": "///E/59/O", "atom2_id": "///E/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4372, "atom1_serNum": 41850, "atom2_serNum": 41881, "donAcc_type": "standard", "distance": 3.487, "atom1_id": "///E/59/O", "atom2_id": "///E/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4373, "atom1_serNum": 41850, "atom2_serNum": 41892, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///E/59/O", "atom2_id": "///E/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4374, "atom1_serNum": 41871, "atom2_serNum": 41921, "donAcc_type": "standard", "distance": 2.586, "atom1_id": "///E/62/O", "atom2_id": "///E/67/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4375, "atom1_serNum": 41880, "atom2_serNum": 41911, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///E/63/O", "atom2_id": "///E/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4376, "atom1_serNum": 41884, "atom2_serNum": 41922, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///E/64/O", "atom2_id": "///E/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4377, "atom1_serNum": 41891, "atom2_serNum": 53965, "donAcc_type": "standard", "distance": 3.939, "atom1_id": "///E/64/NH2", "atom2_id": "///L/71/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4378, "atom1_serNum": 41895, "atom2_serNum": 41931, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///E/65/O", "atom2_id": "///E/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4379, "atom1_serNum": 41901, "atom2_serNum": 41929, "donAcc_type": "standard", "distance": 2.712, "atom1_id": "///E/65/NH1", "atom2_id": "///E/68/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4380, "atom1_serNum": 41906, "atom2_serNum": 41939, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///E/66/O", "atom2_id": "///E/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4381, "atom1_serNum": 41906, "atom2_serNum": 41944, "donAcc_type": "acceptable", "distance": 2.666, "atom1_id": "///E/66/O", "atom2_id": "///E/70/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4382, "atom1_serNum": 41914, "atom2_serNum": 41946, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///E/67/O", "atom2_id": "///E/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4383, "atom1_serNum": 41918, "atom2_serNum": 54145, "donAcc_type": "standard", "distance": 3.451, "atom1_id": "///E/67/NE", "atom2_id": "///L/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4384, "atom1_serNum": 41920, "atom2_serNum": 54171, "donAcc_type": "standard", "distance": 3.169, "atom1_id": "///E/67/NH1", "atom2_id": "///L/96/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4385, "atom1_serNum": 41925, "atom2_serNum": 41951, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///E/68/O", "atom2_id": "///E/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4386, "atom1_serNum": 41934, "atom2_serNum": 41958, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///E/69/O", "atom2_id": "///E/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4387, "atom1_serNum": 41942, "atom2_serNum": 41965, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///E/70/O", "atom2_id": "///E/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4388, "atom1_serNum": 41944, "atom2_serNum": 42062, "donAcc_type": "acceptable", "distance": 3.890, "atom1_id": "///E/70/OG1", "atom2_id": "///E/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4389, "atom1_serNum": 41949, "atom2_serNum": 41974, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///E/71/O", "atom2_id": "///E/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4390, "atom1_serNum": 41954, "atom2_serNum": 41983, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///E/72/O", "atom2_id": "///E/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4391, "atom1_serNum": 41961, "atom2_serNum": 41994, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///E/73/O", "atom2_id": "///E/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4392, "atom1_serNum": 41961, "atom2_serNum": 42005, "donAcc_type": "standard", "distance": 3.596, "atom1_id": "///E/73/O", "atom2_id": "///E/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4393, "atom1_serNum": 41968, "atom2_serNum": 42005, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///E/74/O", "atom2_id": "///E/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4394, "atom1_serNum": 41968, "atom2_serNum": 42009, "donAcc_type": "standard", "distance": 3.761, "atom1_id": "///E/74/O", "atom2_id": "///E/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4395, "atom1_serNum": 41982, "atom2_serNum": 53482, "donAcc_type": "standard", "distance": 3.975, "atom1_id": "///E/75/NZ", "atom2_id": "///L/14/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4396, "atom1_serNum": 41982, "atom2_serNum": 53531, "donAcc_type": "standard", "distance": 2.308, "atom1_id": "///E/75/NZ", "atom2_id": "///L/20/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4397, "atom1_serNum": 42087, "atom2_serNum": 42094, "donAcc_type": "standard", "distance": 2.630, "atom1_id": "///E/89/N", "atom2_id": "///E/89/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4398, "atom1_serNum": 42115, "atom2_serNum": 42122, "donAcc_type": "acceptable", "distance": 2.492, "atom1_id": "///E/92/O", "atom2_id": "///E/93/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4399, "atom1_serNum": 42120, "atom2_serNum": 42122, "donAcc_type": "acceptable", "distance": 2.707, "atom1_id": "///E/93/O", "atom2_id": "///E/93/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4400, "atom1_serNum": 42120, "atom2_serNum": 42139, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///E/93/O", "atom2_id": "///E/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4401, "atom1_serNum": 42127, "atom2_serNum": 42178, "donAcc_type": "questionable", "distance": 3.161, "atom1_id": "///E/94/O", "atom2_id": "///E/101/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4402, "atom1_serNum": 42142, "atom2_serNum": 42153, "donAcc_type": "standard", "distance": 3.177, "atom1_id": "///E/96/O", "atom2_id": "///E/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4403, "atom1_serNum": 42150, "atom2_serNum": 42178, "donAcc_type": "questionable", "distance": 2.640, "atom1_id": "///E/97/O", "atom2_id": "///E/101/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4404, "atom1_serNum": 42156, "atom2_serNum": 42180, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///E/98/O", "atom2_id": "///E/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4405, "atom1_serNum": 42161, "atom2_serNum": 42185, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///E/99/O", "atom2_id": "///E/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4406, "atom1_serNum": 42169, "atom2_serNum": 42194, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///E/100/O", "atom2_id": "///E/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4407, "atom1_serNum": 42174, "atom2_serNum": 42199, "donAcc_type": "acceptable", "distance": 2.664, "atom1_id": "///E/101/O", "atom2_id": "///E/104/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4408, "atom1_serNum": 42174, "atom2_serNum": 42200, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///E/101/O", "atom2_id": "///E/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4409, "atom1_serNum": 42183, "atom2_serNum": 42208, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///E/102/O", "atom2_id": "///E/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4410, "atom1_serNum": 42188, "atom2_serNum": 42219, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///E/103/O", "atom2_id": "///E/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4411, "atom1_serNum": 42197, "atom2_serNum": 42231, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///E/104/O", "atom2_id": "///E/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4412, "atom1_serNum": 42203, "atom2_serNum": 42240, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///E/105/O", "atom2_id": "///E/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4413, "atom1_serNum": 42211, "atom2_serNum": 42248, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///E/106/O", "atom2_id": "///E/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4414, "atom1_serNum": 42222, "atom2_serNum": 42256, "donAcc_type": "standard", "distance": 3.922, "atom1_id": "///E/107/O", "atom2_id": "///E/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4415, "atom1_serNum": 42234, "atom2_serNum": 42264, "donAcc_type": "standard", "distance": 3.603, "atom1_id": "///E/108/O", "atom2_id": "///E/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4416, "atom1_serNum": 42239, "atom2_serNum": 42309, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///E/108/NZ", "atom2_id": "///E/118/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4417, "atom1_serNum": 42275, "atom2_serNum": 42306, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///E/114/O", "atom2_id": "///E/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4418, "atom1_serNum": 42280, "atom2_serNum": 42311, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///E/115/O", "atom2_id": "///E/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4419, "atom1_serNum": 42287, "atom2_serNum": 42317, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///E/116/O", "atom2_id": "///E/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4420, "atom1_serNum": 42298, "atom2_serNum": 42329, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///E/117/O", "atom2_id": "///E/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4421, "atom1_serNum": 42309, "atom2_serNum": 42333, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///E/118/O", "atom2_id": "///E/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4422, "atom1_serNum": 42314, "atom2_serNum": 42340, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///E/119/O", "atom2_id": "///E/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4423, "atom1_serNum": 42320, "atom2_serNum": 42348, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///E/120/O", "atom2_id": "///E/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4424, "atom1_serNum": 42332, "atom2_serNum": 42359, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///E/121/O", "atom2_id": "///E/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4425, "atom1_serNum": 42336, "atom2_serNum": 42370, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///E/122/O", "atom2_id": "///E/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4426, "atom1_serNum": 42343, "atom2_serNum": 42378, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///E/123/O", "atom2_id": "///E/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4427, "atom1_serNum": 42351, "atom2_serNum": 42386, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///E/124/O", "atom2_id": "///E/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4428, "atom1_serNum": 42362, "atom2_serNum": 42395, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///E/125/O", "atom2_id": "///E/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4429, "atom1_serNum": 42373, "atom2_serNum": 42395, "donAcc_type": "standard", "distance": 3.095, "atom1_id": "///E/126/O", "atom2_id": "///E/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4430, "atom1_serNum": 42373, "atom2_serNum": 42405, "donAcc_type": "standard", "distance": 3.938, "atom1_id": "///E/126/O", "atom2_id": "///E/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4431, "atom1_serNum": 42398, "atom2_serNum": 42400, "donAcc_type": "acceptable", "distance": 2.916, "atom1_id": "///E/129/O", "atom2_id": "///E/129/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4432, "atom1_serNum": 42413, "atom2_serNum": 42588, "donAcc_type": "standard", "distance": 2.526, "atom1_id": "///E/132/O", "atom2_id": "///E/156/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4433, "atom1_serNum": 42422, "atom2_serNum": 42848, "donAcc_type": "standard", "distance": 3.875, "atom1_id": "///E/133/O", "atom2_id": "///E/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4434, "atom1_serNum": 42423, "atom2_serNum": 42579, "donAcc_type": "standard", "distance": 3.288, "atom1_id": "///E/134/N", "atom2_id": "///E/154/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4435, "atom1_serNum": 42429, "atom2_serNum": 42834, "donAcc_type": "standard", "distance": 2.533, "atom1_id": "///E/135/N", "atom2_id": "///E/187/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4436, "atom1_serNum": 42432, "atom2_serNum": 42831, "donAcc_type": "standard", "distance": 2.554, "atom1_id": "///E/135/O", "atom2_id": "///E/187/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4437, "atom1_serNum": 42437, "atom2_serNum": 42557, "donAcc_type": "standard", "distance": 3.534, "atom1_id": "///E/135/OE2", "atom2_id": "///E/151/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4438, "atom1_serNum": 42438, "atom2_serNum": 42561, "donAcc_type": "standard", "distance": 3.704, "atom1_id": "///E/136/N", "atom2_id": "///E/152/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4439, "atom1_serNum": 42441, "atom2_serNum": 42558, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///E/136/O", "atom2_id": "///E/152/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4440, "atom1_serNum": 42445, "atom2_serNum": 42818, "donAcc_type": "standard", "distance": 3.504, "atom1_id": "///E/137/N", "atom2_id": "///E/185/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4441, "atom1_serNum": 42448, "atom2_serNum": 42815, "donAcc_type": "standard", "distance": 3.361, "atom1_id": "///E/137/O", "atom2_id": "///E/185/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4442, "atom1_serNum": 42452, "atom2_serNum": 42544, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///E/138/N", "atom2_id": "///E/150/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4443, "atom1_serNum": 42455, "atom2_serNum": 42541, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///E/138/O", "atom2_id": "///E/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4444, "atom1_serNum": 42459, "atom2_serNum": 42806, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///E/139/N", "atom2_id": "///E/183/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4445, "atom1_serNum": 42462, "atom2_serNum": 42803, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///E/139/O", "atom2_id": "///E/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4446, "atom1_serNum": 42464, "atom2_serNum": 42540, "donAcc_type": "acceptable", "distance": 2.729, "atom1_id": "///E/139/OG", "atom2_id": "///E/149/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4447, "atom1_serNum": 42468, "atom2_serNum": 42478, "donAcc_type": "standard", "distance": 3.264, "atom1_id": "///E/140/O", "atom2_id": "///E/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4448, "atom1_serNum": 42468, "atom2_serNum": 42526, "donAcc_type": "standard", "distance": 3.221, "atom1_id": "///E/140/O", "atom2_id": "///E/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4449, "atom1_serNum": 42500, "atom2_serNum": 42783, "donAcc_type": "standard", "distance": 3.212, "atom1_id": "///E/144/O", "atom2_id": "///E/179/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4450, "atom1_serNum": 42631, "atom2_serNum": 42647, "donAcc_type": "standard", "distance": 3.478, "atom1_id": "///E/161/O", "atom2_id": "///E/164/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4451, "atom1_serNum": 42635, "atom2_serNum": 42654, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///E/162/O", "atom2_id": "///E/165/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4452, "atom1_serNum": 42643, "atom2_serNum": 42674, "donAcc_type": "standard", "distance": 3.055, "atom1_id": "///E/163/O", "atom2_id": "///E/167/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4453, "atom1_serNum": 42677, "atom2_serNum": 42856, "donAcc_type": "standard", "distance": 2.595, "atom1_id": "///E/167/O", "atom2_id": "///E/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4454, "atom1_serNum": 42685, "atom2_serNum": 42950, "donAcc_type": "acceptable", "distance": 2.272, "atom1_id": "///E/167/OH", "atom2_id": "///E/202/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4455, "atom1_serNum": 42685, "atom2_serNum": 42959, "donAcc_type": "acceptable", "distance": 2.603, "atom1_id": "///E/167/OH", "atom2_id": "///E/203/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4456, "atom1_serNum": 42693, "atom2_serNum": 42843, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///E/169/N", "atom2_id": "///E/188/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4457, "atom1_serNum": 42696, "atom2_serNum": 42840, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///E/169/O", "atom2_id": "///E/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4458, "atom1_serNum": 42708, "atom2_serNum": 42827, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///E/171/N", "atom2_id": "///E/186/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4459, "atom1_serNum": 42716, "atom2_serNum": 42727, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///E/172/O", "atom2_id": "///E/173/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4460, "atom1_serNum": 42716, "atom2_serNum": 42730, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///E/172/O", "atom2_id": "///E/173/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4461, "atom1_serNum": 42720, "atom2_serNum": 42810, "donAcc_type": "standard", "distance": 2.999, "atom1_id": "///E/173/N", "atom2_id": "///E/184/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4462, "atom1_serNum": 42723, "atom2_serNum": 42807, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///E/173/O", "atom2_id": "///E/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4463, "atom1_serNum": 42723, "atom2_serNum": 42810, "donAcc_type": "questionable", "distance": 2.989, "atom1_id": "///E/173/O", "atom2_id": "///E/184/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4464, "atom1_serNum": 42731, "atom2_serNum": 42737, "donAcc_type": "acceptable", "distance": 2.875, "atom1_id": "///E/174/N", "atom2_id": "///E/174/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 4465, "atom1_serNum": 42741, "atom2_serNum": 42798, "donAcc_type": "standard", "distance": 3.181, "atom1_id": "///E/175/N", "atom2_id": "///E/182/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4466, "atom1_serNum": 42744, "atom2_serNum": 42795, "donAcc_type": "standard", "distance": 2.714, "atom1_id": "///E/175/O", "atom2_id": "///E/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4467, "atom1_serNum": 42756, "atom2_serNum": 42787, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///E/177/N", "atom2_id": "///E/180/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4468, "atom1_serNum": 42879, "atom2_serNum": 42941, "donAcc_type": "standard", "distance": 3.096, "atom1_id": "///E/192/NE1", "atom2_id": "///E/201/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4469, "atom1_serNum": 42885, "atom2_serNum": 42891, "donAcc_type": "standard", "distance": 2.536, "atom1_id": "///E/193/N", "atom2_id": "///E/193/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4470, "atom1_serNum": 42888, "atom2_serNum": 42934, "donAcc_type": "questionable", "distance": 2.878, "atom1_id": "///E/193/O", "atom2_id": "///E/200/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4471, "atom1_serNum": 42892, "atom2_serNum": 42910, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///E/193/OD2", "atom2_id": "///E/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4472, "atom1_serNum": 42892, "atom2_serNum": 42919, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///E/193/OD2", "atom2_id": "///E/198/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4473, "atom1_serNum": 42892, "atom2_serNum": 42927, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///E/193/OD2", "atom2_id": "///E/199/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4474, "atom1_serNum": 42896, "atom2_serNum": 42946, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///E/194/O", "atom2_id": "///E/201/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4475, "atom1_serNum": 42905, "atom2_serNum": 42918, "donAcc_type": "acceptable", "distance": 2.873, "atom1_id": "///E/195/OG", "atom2_id": "///E/197/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4476, "atom1_serNum": 42909, "atom2_serNum": 42930, "donAcc_type": "questionable", "distance": 3.156, "atom1_id": "///E/196/O", "atom2_id": "///E/199/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4477, "atom1_serNum": 42955, "atom2_serNum": 60961, "donAcc_type": "standard", "distance": 3.169, "atom1_id": "///E/202/NZ", "atom2_id": "///S/42/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4478, "atom1_serNum": 42966, "atom2_serNum": 42986, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///E/204/O", "atom2_id": "///E/207/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4479, "atom1_serNum": 43006, "atom2_serNum": 60942, "donAcc_type": "standard", "distance": 3.898, "atom1_id": "///E/209/O", "atom2_id": "///S/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4480, "atom1_serNum": 43024, "atom2_serNum": 43031, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///E/212/N", "atom2_id": "///E/212/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4481, "atom1_serNum": 43027, "atom2_serNum": 43040, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///E/212/O", "atom2_id": "///E/214/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4482, "atom1_serNum": 43036, "atom2_serNum": 43049, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///E/213/O", "atom2_id": "///E/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4483, "atom1_serNum": 43077, "atom2_serNum": 43089, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///E/218/O", "atom2_id": "///E/220/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4484, "atom1_serNum": 43085, "atom2_serNum": 74143, "donAcc_type": "questionable", "distance": 3.063, "atom1_id": "///E/219/O", "atom2_id": "///h/190/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4485, "atom1_serNum": 43099, "atom2_serNum": 43110, "donAcc_type": "standard", "distance": 3.078, "atom1_id": "///E/221/O", "atom2_id": "///E/223/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4486, "atom1_serNum": 43110, "atom2_serNum": 74135, "donAcc_type": "standard", "distance": 3.228, "atom1_id": "///E/223/N", "atom2_id": "///h/189/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4487, "atom1_serNum": 43113, "atom2_serNum": 74132, "donAcc_type": "standard", "distance": 3.122, "atom1_id": "///E/223/O", "atom2_id": "///h/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4488, "atom1_serNum": 43113, "atom2_serNum": 74135, "donAcc_type": "questionable", "distance": 2.850, "atom1_id": "///E/223/O", "atom2_id": "///h/189/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4489, "atom1_serNum": 43123, "atom2_serNum": 74386, "donAcc_type": "acceptable", "distance": 2.412, "atom1_id": "///E/224/OG", "atom2_id": "///h/224/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4490, "atom1_serNum": 43124, "atom2_serNum": 74117, "donAcc_type": "standard", "distance": 3.006, "atom1_id": "///E/225/N", "atom2_id": "///h/187/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4491, "atom1_serNum": 43127, "atom2_serNum": 74114, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///E/225/O", "atom2_id": "///h/187/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4492, "atom1_serNum": 43140, "atom2_serNum": 74383, "donAcc_type": "standard", "distance": 3.682, "atom1_id": "///E/226/OE1", "atom2_id": "///h/224/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4493, "atom1_serNum": 43145, "atom2_serNum": 74089, "donAcc_type": "standard", "distance": 3.240, "atom1_id": "///E/227/O", "atom2_id": "///h/183/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4494, "atom1_serNum": 43204, "atom2_serNum": 43387, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///F/8/O", "atom2_id": "///F/30/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4495, "atom1_serNum": 43214, "atom2_serNum": 43366, "donAcc_type": "standard", "distance": 2.696, "atom1_id": "///F/9/O", "atom2_id": "///F/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4496, "atom1_serNum": 43228, "atom2_serNum": 43351, "donAcc_type": "standard", "distance": 2.708, "atom1_id": "///F/11/N", "atom2_id": "///F/26/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4497, "atom1_serNum": 43235, "atom2_serNum": 43358, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///F/11/NE", "atom2_id": "///F/27/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4498, "atom1_serNum": 43237, "atom2_serNum": 43315, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///F/11/NH1", "atom2_id": "///F/21/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4499, "atom1_serNum": 43237, "atom2_serNum": 43318, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///F/11/NH1", "atom2_id": "///F/21/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4500, "atom1_serNum": 43237, "atom2_serNum": 43342, "donAcc_type": "acceptable", "distance": 3.158, "atom1_id": "///F/11/NH1", "atom2_id": "///F/24/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4501, "atom1_serNum": 43238, "atom2_serNum": 43342, "donAcc_type": "acceptable", "distance": 2.486, "atom1_id": "///F/11/NH2", "atom2_id": "///F/24/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4502, "atom1_serNum": 43242, "atom2_serNum": 43251, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///F/12/O", "atom2_id": "///F/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4503, "atom1_serNum": 43259, "atom2_serNum": 43282, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///F/15/O", "atom2_id": "///F/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4504, "atom1_serNum": 43266, "atom2_serNum": 43296, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///F/16/O", "atom2_id": "///F/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4505, "atom1_serNum": 43275, "atom2_serNum": 43560, "donAcc_type": "standard", "distance": 3.397, "atom1_id": "///F/17/O", "atom2_id": "///F/51/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4506, "atom1_serNum": 43281, "atom2_serNum": 43470, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///F/17/NE2", "atom2_id": "///F/41/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4507, "atom1_serNum": 43285, "atom2_serNum": 43559, "donAcc_type": "standard", "distance": 3.352, "atom1_id": "///F/18/O", "atom2_id": "///F/51/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4508, "atom1_serNum": 43290, "atom2_serNum": 43470, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///F/18/NE1", "atom2_id": "///F/41/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4509, "atom1_serNum": 43318, "atom2_serNum": 43342, "donAcc_type": "acceptable", "distance": 3.220, "atom1_id": "///F/21/OD1", "atom2_id": "///F/24/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4510, "atom1_serNum": 43319, "atom2_serNum": 43337, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///F/21/OD2", "atom2_id": "///F/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4511, "atom1_serNum": 43369, "atom2_serNum": 43378, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///F/28/O", "atom2_id": "///F/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4512, "atom1_serNum": 43396, "atom2_serNum": 43799, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///F/32/N", "atom2_id": "///F/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4513, "atom1_serNum": 43401, "atom2_serNum": 43787, "donAcc_type": "acceptable", "distance": 3.157, "atom1_id": "///F/32/OG", "atom2_id": "///F/79/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4514, "atom1_serNum": 43405, "atom2_serNum": 43407, "donAcc_type": "acceptable", "distance": 3.054, "atom1_id": "///F/33/O", "atom2_id": "///F/33/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4515, "atom1_serNum": 43473, "atom2_serNum": 43825, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///F/42/N", "atom2_id": "///F/84/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4516, "atom1_serNum": 43476, "atom2_serNum": 43822, "donAcc_type": "standard", "distance": 3.133, "atom1_id": "///F/42/O", "atom2_id": "///F/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4517, "atom1_serNum": 43484, "atom2_serNum": 43512, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///F/43/O", "atom2_id": "///F/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4518, "atom1_serNum": 43488, "atom2_serNum": 43791, "donAcc_type": "standard", "distance": 3.461, "atom1_id": "///F/44/N", "atom2_id": "///F/80/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4519, "atom1_serNum": 43488, "atom2_serNum": 43806, "donAcc_type": "standard", "distance": 3.662, "atom1_id": "///F/44/N", "atom2_id": "///F/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4520, "atom1_serNum": 43491, "atom2_serNum": 43523, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///F/44/O", "atom2_id": "///F/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4521, "atom1_serNum": 43496, "atom2_serNum": 43791, "donAcc_type": "standard", "distance": 3.355, "atom1_id": "///F/45/N", "atom2_id": "///F/80/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4522, "atom1_serNum": 43499, "atom2_serNum": 43531, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///F/45/O", "atom2_id": "///F/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4523, "atom1_serNum": 43507, "atom2_serNum": 43542, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///F/46/O", "atom2_id": "///F/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4524, "atom1_serNum": 43507, "atom2_serNum": 43550, "donAcc_type": "standard", "distance": 3.563, "atom1_id": "///F/46/O", "atom2_id": "///F/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4525, "atom1_serNum": 43515, "atom2_serNum": 43561, "donAcc_type": "standard", "distance": 3.669, "atom1_id": "///F/47/O", "atom2_id": "///F/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4526, "atom1_serNum": 43526, "atom2_serNum": 43578, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///F/48/O", "atom2_id": "///F/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4527, "atom1_serNum": 43540, "atom2_serNum": 43548, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///F/49/NH1", "atom2_id": "///F/50/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4528, "atom1_serNum": 43581, "atom2_serNum": 67701, "donAcc_type": "standard", "distance": 3.864, "atom1_id": "///F/54/O", "atom2_id": "///Z/20/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4529, "atom1_serNum": 43581, "atom2_serNum": 67719, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///F/54/O", "atom2_id": "///Z/22/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4530, "atom1_serNum": 43589, "atom2_serNum": 43923, "donAcc_type": "acceptable", "distance": 3.228, "atom1_id": "///F/54/OH", "atom2_id": "///F/97/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4531, "atom1_serNum": 43595, "atom2_serNum": 43629, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///F/56/N", "atom2_id": "///F/60/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4532, "atom1_serNum": 43603, "atom2_serNum": 43629, "donAcc_type": "standard", "distance": 3.270, "atom1_id": "///F/57/N", "atom2_id": "///F/60/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4533, "atom1_serNum": 43606, "atom2_serNum": 43631, "donAcc_type": "standard", "distance": 3.763, "atom1_id": "///F/57/O", "atom2_id": "///F/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4534, "atom1_serNum": 43608, "atom2_serNum": 43614, "donAcc_type": "acceptable", "distance": 3.251, "atom1_id": "///F/57/OG1", "atom2_id": "///F/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4535, "atom1_serNum": 43617, "atom2_serNum": 43647, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///F/59/O", "atom2_id": "///F/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4536, "atom1_serNum": 43625, "atom2_serNum": 43656, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///F/60/O", "atom2_id": "///F/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4537, "atom1_serNum": 43634, "atom2_serNum": 43664, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///F/61/O", "atom2_id": "///F/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4538, "atom1_serNum": 43641, "atom2_serNum": 43670, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///F/62/O", "atom2_id": "///F/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4539, "atom1_serNum": 43650, "atom2_serNum": 43678, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///F/63/O", "atom2_id": "///F/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4540, "atom1_serNum": 43655, "atom2_serNum": 68203, "donAcc_type": "standard", "distance": 3.930, "atom1_id": "///F/63/NZ", "atom2_id": "///Z/84/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4541, "atom1_serNum": 43667, "atom2_serNum": 43687, "donAcc_type": "standard", "distance": 3.707, "atom1_id": "///F/65/O", "atom2_id": "///F/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4542, "atom1_serNum": 43667, "atom2_serNum": 43778, "donAcc_type": "acceptable", "distance": 3.166, "atom1_id": "///F/65/O", "atom2_id": "///F/78/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4543, "atom1_serNum": 43701, "atom2_serNum": 43893, "donAcc_type": "questionable", "distance": 3.243, "atom1_id": "///F/69/O", "atom2_id": "///F/93/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4544, "atom1_serNum": 43717, "atom2_serNum": 43876, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///F/71/N", "atom2_id": "///F/91/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4545, "atom1_serNum": 43720, "atom2_serNum": 43873, "donAcc_type": "standard", "distance": 2.803, "atom1_id": "///F/71/O", "atom2_id": "///F/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4546, "atom1_serNum": 43729, "atom2_serNum": 43746, "donAcc_type": "standard", "distance": 2.712, "atom1_id": "///F/72/O", "atom2_id": "///F/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4547, "atom1_serNum": 43734, "atom2_serNum": 43861, "donAcc_type": "standard", "distance": 2.654, "atom1_id": "///F/73/N", "atom2_id": "///F/89/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4548, "atom1_serNum": 43741, "atom2_serNum": 43771, "donAcc_type": "standard", "distance": 3.496, "atom1_id": "///F/73/OD2", "atom2_id": "///F/77/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4549, "atom1_serNum": 43776, "atom2_serNum": 43778, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///F/78/O", "atom2_id": "///F/78/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4550, "atom1_serNum": 43786, "atom2_serNum": 43788, "donAcc_type": "standard", "distance": 3.070, "atom1_id": "///F/79/OD1", "atom2_id": "///F/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4551, "atom1_serNum": 43830, "atom2_serNum": 43850, "donAcc_type": "standard", "distance": 3.708, "atom1_id": "///F/85/O", "atom2_id": "///F/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4552, "atom1_serNum": 43834, "atom2_serNum": 44296, "donAcc_type": "standard", "distance": 3.871, "atom1_id": "///F/86/O", "atom2_id": "///F/142/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4553, "atom1_serNum": 43842, "atom2_serNum": 43957, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///F/87/N", "atom2_id": "///F/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4554, "atom1_serNum": 43853, "atom2_serNum": 43954, "donAcc_type": "standard", "distance": 3.176, "atom1_id": "///F/88/O", "atom2_id": "///F/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4555, "atom1_serNum": 43868, "atom2_serNum": 43932, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///F/90/O", "atom2_id": "///F/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4556, "atom1_serNum": 43878, "atom2_serNum": 43930, "donAcc_type": "acceptable", "distance": 2.369, "atom1_id": "///F/91/OG", "atom2_id": "///F/98/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4557, "atom1_serNum": 43879, "atom2_serNum": 43918, "donAcc_type": "standard", "distance": 3.511, "atom1_id": "///F/92/N", "atom2_id": "///F/97/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4558, "atom1_serNum": 43887, "atom2_serNum": 43893, "donAcc_type": "standard", "distance": 2.690, "atom1_id": "///F/93/N", "atom2_id": "///F/93/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4559, "atom1_serNum": 43907, "atom2_serNum": 43909, "donAcc_type": "acceptable", "distance": 2.849, "atom1_id": "///F/95/O", "atom2_id": "///F/95/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4560, "atom1_serNum": 43909, "atom2_serNum": 43922, "donAcc_type": "acceptable", "distance": 2.753, "atom1_id": "///F/95/OG1", "atom2_id": "///F/97/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4561, "atom1_serNum": 43909, "atom2_serNum": 43923, "donAcc_type": "acceptable", "distance": 2.793, "atom1_id": "///F/95/OG1", "atom2_id": "///F/97/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4562, "atom1_serNum": 43915, "atom2_serNum": 43922, "donAcc_type": "standard", "distance": 2.571, "atom1_id": "///F/97/N", "atom2_id": "///F/97/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4563, "atom1_serNum": 43927, "atom2_serNum": 44065, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///F/98/O", "atom2_id": "///F/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4564, "atom1_serNum": 43943, "atom2_serNum": 44047, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///F/100/N", "atom2_id": "///F/112/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4565, "atom1_serNum": 43946, "atom2_serNum": 43962, "donAcc_type": "standard", "distance": 3.318, "atom1_id": "///F/100/O", "atom2_id": "///F/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4566, "atom1_serNum": 43953, "atom2_serNum": 44099, "donAcc_type": "standard", "distance": 3.700, "atom1_id": "///F/100/NH2", "atom2_id": "///F/118/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4567, "atom1_serNum": 43953, "atom2_serNum": 44122, "donAcc_type": "standard", "distance": 2.792, "atom1_id": "///F/100/NH2", "atom2_id": "///F/121/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4568, "atom1_serNum": 43965, "atom2_serNum": 44032, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///F/102/O", "atom2_id": "///F/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4569, "atom1_serNum": 43982, "atom2_serNum": 43988, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///F/104/N", "atom2_id": "///F/104/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4570, "atom1_serNum": 43982, "atom2_serNum": 44013, "donAcc_type": "standard", "distance": 3.195, "atom1_id": "///F/104/N", "atom2_id": "///F/108/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4571, "atom1_serNum": 43985, "atom2_serNum": 44663, "donAcc_type": "questionable", "distance": 3.324, "atom1_id": "///F/104/O", "atom2_id": "///F/190/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4572, "atom1_serNum": 43988, "atom2_serNum": 43997, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///F/104/OD1", "atom2_id": "///F/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4573, "atom1_serNum": 43989, "atom2_serNum": 44020, "donAcc_type": "standard", "distance": 3.905, "atom1_id": "///F/104/OD2", "atom2_id": "///F/108/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4574, "atom1_serNum": 43993, "atom2_serNum": 43995, "donAcc_type": "acceptable", "distance": 2.970, "atom1_id": "///F/105/O", "atom2_id": "///F/105/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4575, "atom1_serNum": 43995, "atom2_serNum": 45083, "donAcc_type": "acceptable", "distance": 3.374, "atom1_id": "///F/105/OG1", "atom2_id": "///F/245/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4576, "atom1_serNum": 44000, "atom2_serNum": 44010, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///F/106/O", "atom2_id": "///F/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4577, "atom1_serNum": 44035, "atom2_serNum": 44044, "donAcc_type": "standard", "distance": 3.284, "atom1_id": "///F/110/O", "atom2_id": "///F/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4578, "atom1_serNum": 44053, "atom2_serNum": 45031, "donAcc_type": "acceptable", "distance": 2.987, "atom1_id": "///F/112/NE2", "atom2_id": "///F/237/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4579, "atom1_serNum": 44076, "atom2_serNum": 44096, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///F/115/O", "atom2_id": "///F/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4580, "atom1_serNum": 44076, "atom2_serNum": 44105, "donAcc_type": "standard", "distance": 3.268, "atom1_id": "///F/115/O", "atom2_id": "///F/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4581, "atom1_serNum": 44078, "atom2_serNum": 44094, "donAcc_type": "acceptable", "distance": 2.266, "atom1_id": "///F/115/OG1", "atom2_id": "///F/117/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4582, "atom1_serNum": 44083, "atom2_serNum": 44105, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///F/116/O", "atom2_id": "///F/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4583, "atom1_serNum": 44087, "atom2_serNum": 44094, "donAcc_type": "standard", "distance": 2.513, "atom1_id": "///F/117/N", "atom2_id": "///F/117/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4584, "atom1_serNum": 44103, "atom2_serNum": 45031, "donAcc_type": "acceptable", "distance": 3.068, "atom1_id": "///F/118/OE1", "atom2_id": "///F/237/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4585, "atom1_serNum": 44113, "atom2_serNum": 44469, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///F/120/O", "atom2_id": "///F/164/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4586, "atom1_serNum": 44130, "atom2_serNum": 45007, "donAcc_type": "acceptable", "distance": 2.455, "atom1_id": "///F/121/OH", "atom2_id": "///F/235/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4587, "atom1_serNum": 44131, "atom2_serNum": 44456, "donAcc_type": "standard", "distance": 3.508, "atom1_id": "///F/122/N", "atom2_id": "///F/162/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4588, "atom1_serNum": 44134, "atom2_serNum": 44453, "donAcc_type": "standard", "distance": 3.471, "atom1_id": "///F/122/O", "atom2_id": "///F/162/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4589, "atom1_serNum": 44139, "atom2_serNum": 44303, "donAcc_type": "standard", "distance": 3.148, "atom1_id": "///F/122/NZ", "atom2_id": "///F/143/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4590, "atom1_serNum": 44148, "atom2_serNum": 44439, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///F/124/N", "atom2_id": "///F/160/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4591, "atom1_serNum": 44151, "atom2_serNum": 44436, "donAcc_type": "standard", "distance": 2.605, "atom1_id": "///F/124/O", "atom2_id": "///F/160/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4592, "atom1_serNum": 44157, "atom2_serNum": 44287, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///F/125/O", "atom2_id": "///F/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4593, "atom1_serNum": 44162, "atom2_serNum": 44932, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///F/125/NZ", "atom2_id": "///F/225/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4594, "atom1_serNum": 44163, "atom2_serNum": 44424, "donAcc_type": "standard", "distance": 3.693, "atom1_id": "///F/126/N", "atom2_id": "///F/158/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4595, "atom1_serNum": 44166, "atom2_serNum": 44409, "donAcc_type": "questionable", "distance": 2.800, "atom1_id": "///F/126/O", "atom2_id": "///F/156/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4596, "atom1_serNum": 44170, "atom2_serNum": 44276, "donAcc_type": "standard", "distance": 2.546, "atom1_id": "///F/127/N", "atom2_id": "///F/140/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4597, "atom1_serNum": 44181, "atom2_serNum": 44276, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///F/128/N", "atom2_id": "///F/140/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4598, "atom1_serNum": 44184, "atom2_serNum": 44273, "donAcc_type": "standard", "distance": 3.187, "atom1_id": "///F/128/O", "atom2_id": "///F/140/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4599, "atom1_serNum": 44198, "atom2_serNum": 44258, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///F/130/N", "atom2_id": "///F/138/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4600, "atom1_serNum": 44201, "atom2_serNum": 44255, "donAcc_type": "standard", "distance": 2.641, "atom1_id": "///F/130/O", "atom2_id": "///F/138/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4601, "atom1_serNum": 44216, "atom2_serNum": 44243, "donAcc_type": "standard", "distance": 2.449, "atom1_id": "///F/132/N", "atom2_id": "///F/136/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4602, "atom1_serNum": 44243, "atom2_serNum": 44261, "donAcc_type": "acceptable", "distance": 3.096, "atom1_id": "///F/136/O", "atom2_id": "///F/138/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4603, "atom1_serNum": 44251, "atom2_serNum": 44347, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///F/137/O", "atom2_id": "///F/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4604, "atom1_serNum": 44265, "atom2_serNum": 44331, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///F/139/N", "atom2_id": "///F/147/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4605, "atom1_serNum": 44268, "atom2_serNum": 44328, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///F/139/O", "atom2_id": "///F/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4606, "atom1_serNum": 44283, "atom2_serNum": 44305, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///F/141/O", "atom2_id": "///F/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4607, "atom1_serNum": 44285, "atom2_serNum": 44313, "donAcc_type": "acceptable", "distance": 3.159, "atom1_id": "///F/141/OG1", "atom2_id": "///F/145/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4608, "atom1_serNum": 44304, "atom2_serNum": 44310, "donAcc_type": "standard", "distance": 3.341, "atom1_id": "///F/143/OD2", "atom2_id": "///F/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4609, "atom1_serNum": 44313, "atom2_serNum": 44328, "donAcc_type": "standard", "distance": 3.129, "atom1_id": "///F/145/O", "atom2_id": "///F/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4610, "atom1_serNum": 44369, "atom2_serNum": 44389, "donAcc_type": "standard", "distance": 3.208, "atom1_id": "///F/151/O", "atom2_id": "///F/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4611, "atom1_serNum": 44384, "atom2_serNum": 44556, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///F/153/O", "atom2_id": "///F/174/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4612, "atom1_serNum": 44397, "atom2_serNum": 44428, "donAcc_type": "standard", "distance": 2.622, "atom1_id": "///F/155/N", "atom2_id": "///F/158/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4613, "atom1_serNum": 44400, "atom2_serNum": 44421, "donAcc_type": "standard", "distance": 3.516, "atom1_id": "///F/155/O", "atom2_id": "///F/158/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4614, "atom1_serNum": 44428, "atom2_serNum": 44556, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///F/158/OD2", "atom2_id": "///F/174/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4615, "atom1_serNum": 44432, "atom2_serNum": 44540, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///F/159/O", "atom2_id": "///F/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4616, "atom1_serNum": 44434, "atom2_serNum": 44951, "donAcc_type": "acceptable", "distance": 3.563, "atom1_id": "///F/159/OG1", "atom2_id": "///F/227/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4617, "atom1_serNum": 44444, "atom2_serNum": 44524, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///F/161/N", "atom2_id": "///F/171/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4618, "atom1_serNum": 44447, "atom2_serNum": 44514, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///F/161/O", "atom2_id": "///F/170/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4619, "atom1_serNum": 44447, "atom2_serNum": 44521, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///F/161/O", "atom2_id": "///F/171/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4620, "atom1_serNum": 44461, "atom2_serNum": 44500, "donAcc_type": "standard", "distance": 3.153, "atom1_id": "///F/163/N", "atom2_id": "///F/168/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4621, "atom1_serNum": 44464, "atom2_serNum": 44493, "donAcc_type": "standard", "distance": 3.072, "atom1_id": "///F/163/O", "atom2_id": "///F/167/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4622, "atom1_serNum": 44468, "atom2_serNum": 44491, "donAcc_type": "acceptable", "distance": 3.222, "atom1_id": "///F/163/OD2", "atom2_id": "///F/166/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4623, "atom1_serNum": 44491, "atom2_serNum": 44497, "donAcc_type": "acceptable", "distance": 3.392, "atom1_id": "///F/166/OG1", "atom2_id": "///F/168/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4624, "atom1_serNum": 44551, "atom2_serNum": 44568, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///F/174/O", "atom2_id": "///F/176/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4625, "atom1_serNum": 44551, "atom2_serNum": 44594, "donAcc_type": "standard", "distance": 3.146, "atom1_id": "///F/174/O", "atom2_id": "///F/179/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4626, "atom1_serNum": 44574, "atom2_serNum": 44576, "donAcc_type": "standard", "distance": 2.634, "atom1_id": "///F/176/OD1", "atom2_id": "///F/177/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4627, "atom1_serNum": 44579, "atom2_serNum": 44581, "donAcc_type": "acceptable", "distance": 2.880, "atom1_id": "///F/177/O", "atom2_id": "///F/177/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4628, "atom1_serNum": 44583, "atom2_serNum": 44697, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///F/178/N", "atom2_id": "///F/195/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4629, "atom1_serNum": 44586, "atom2_serNum": 44979, "donAcc_type": "questionable", "distance": 3.297, "atom1_id": "///F/178/O", "atom2_id": "///F/231/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4630, "atom1_serNum": 44590, "atom2_serNum": 44694, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///F/179/O", "atom2_id": "///F/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4631, "atom1_serNum": 44598, "atom2_serNum": 44955, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///F/180/O", "atom2_id": "///F/228/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4632, "atom1_serNum": 44603, "atom2_serNum": 44686, "donAcc_type": "standard", "distance": 2.704, "atom1_id": "///F/181/N", "atom2_id": "///F/193/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4633, "atom1_serNum": 44606, "atom2_serNum": 44667, "donAcc_type": "questionable", "distance": 3.367, "atom1_id": "///F/181/O", "atom2_id": "///F/191/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4634, "atom1_serNum": 44606, "atom2_serNum": 44683, "donAcc_type": "standard", "distance": 3.054, "atom1_id": "///F/181/O", "atom2_id": "///F/193/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4635, "atom1_serNum": 44609, "atom2_serNum": 44940, "donAcc_type": "standard", "distance": 2.560, "atom1_id": "///F/182/N", "atom2_id": "///F/226/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4636, "atom1_serNum": 44612, "atom2_serNum": 44624, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///F/182/O", "atom2_id": "///F/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4637, "atom1_serNum": 44612, "atom2_serNum": 44937, "donAcc_type": "standard", "distance": 3.140, "atom1_id": "///F/182/O", "atom2_id": "///F/226/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4638, "atom1_serNum": 44617, "atom2_serNum": 44667, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///F/183/N", "atom2_id": "///F/191/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4639, "atom1_serNum": 44620, "atom2_serNum": 44660, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///F/183/O", "atom2_id": "///F/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4640, "atom1_serNum": 44627, "atom2_serNum": 44629, "donAcc_type": "acceptable", "distance": 2.818, "atom1_id": "///F/184/O", "atom2_id": "///F/184/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4641, "atom1_serNum": 44644, "atom2_serNum": 44650, "donAcc_type": "standard", "distance": 2.634, "atom1_id": "///F/188/N", "atom2_id": "///F/188/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4642, "atom1_serNum": 44650, "atom2_serNum": 44894, "donAcc_type": "acceptable", "distance": 3.695, "atom1_id": "///F/188/OD1", "atom2_id": "///F/220/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4643, "atom1_serNum": 44675, "atom2_serNum": 45074, "donAcc_type": "standard", "distance": 3.742, "atom1_id": "///F/192/N", "atom2_id": "///F/243/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4644, "atom1_serNum": 44687, "atom2_serNum": 44828, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///F/194/N", "atom2_id": "///F/211/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4645, "atom1_serNum": 44690, "atom2_serNum": 44825, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///F/194/O", "atom2_id": "///F/211/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4646, "atom1_serNum": 44702, "atom2_serNum": 44811, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///F/196/N", "atom2_id": "///F/209/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4647, "atom1_serNum": 44709, "atom2_serNum": 44811, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///F/197/N", "atom2_id": "///F/209/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4648, "atom1_serNum": 44712, "atom2_serNum": 44808, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///F/197/O", "atom2_id": "///F/209/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4649, "atom1_serNum": 44728, "atom2_serNum": 44797, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///F/199/N", "atom2_id": "///F/207/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4650, "atom1_serNum": 44731, "atom2_serNum": 44794, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///F/199/O", "atom2_id": "///F/207/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4651, "atom1_serNum": 44735, "atom2_serNum": 44757, "donAcc_type": "standard", "distance": 3.665, "atom1_id": "///F/199/OE1", "atom2_id": "///F/201/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4652, "atom1_serNum": 44748, "atom2_serNum": 44792, "donAcc_type": "standard", "distance": 3.182, "atom1_id": "///F/201/N", "atom2_id": "///F/206/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4653, "atom1_serNum": 44751, "atom2_serNum": 44765, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///F/201/O", "atom2_id": "///F/203/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4654, "atom1_serNum": 44789, "atom2_serNum": 44907, "donAcc_type": "standard", "distance": 2.560, "atom1_id": "///F/206/O", "atom2_id": "///F/222/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4655, "atom1_serNum": 44801, "atom2_serNum": 44892, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///F/208/N", "atom2_id": "///F/220/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4656, "atom1_serNum": 44804, "atom2_serNum": 44889, "donAcc_type": "standard", "distance": 3.293, "atom1_id": "///F/208/O", "atom2_id": "///F/220/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4657, "atom1_serNum": 44818, "atom2_serNum": 44876, "donAcc_type": "standard", "distance": 2.693, "atom1_id": "///F/210/N", "atom2_id": "///F/218/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4658, "atom1_serNum": 44821, "atom2_serNum": 44873, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///F/210/O", "atom2_id": "///F/218/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4659, "atom1_serNum": 44834, "atom2_serNum": 44862, "donAcc_type": "standard", "distance": 2.609, "atom1_id": "///F/212/N", "atom2_id": "///F/216/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4660, "atom1_serNum": 44837, "atom2_serNum": 44855, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///F/212/O", "atom2_id": "///F/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4661, "atom1_serNum": 44840, "atom2_serNum": 44842, "donAcc_type": "standard", "distance": 2.244, "atom1_id": "///F/212/OD1", "atom2_id": "///F/213/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4662, "atom1_serNum": 44840, "atom2_serNum": 44847, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///F/212/OD1", "atom2_id": "///F/214/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4663, "atom1_serNum": 44853, "atom2_serNum": 44855, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///F/214/OD1", "atom2_id": "///F/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4664, "atom1_serNum": 44853, "atom2_serNum": 44859, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///F/214/OD1", "atom2_id": "///F/216/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4665, "atom1_serNum": 44854, "atom2_serNum": 44865, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///F/214/ND2", "atom2_id": "///F/216/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4666, "atom1_serNum": 44854, "atom2_serNum": 45078, "donAcc_type": "standard", "distance": 3.329, "atom1_id": "///F/214/ND2", "atom2_id": "///F/244/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4667, "atom1_serNum": 44887, "atom2_serNum": 44894, "donAcc_type": "acceptable", "distance": 2.714, "atom1_id": "///F/219/O", "atom2_id": "///F/220/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4668, "atom1_serNum": 44899, "atom2_serNum": 44921, "donAcc_type": "standard", "distance": 3.179, "atom1_id": "///F/221/O", "atom2_id": "///F/224/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4669, "atom1_serNum": 44958, "atom2_serNum": 45004, "donAcc_type": "standard", "distance": 3.119, "atom1_id": "///F/228/O", "atom2_id": "///F/235/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4670, "atom1_serNum": 44967, "atom2_serNum": 44991, "donAcc_type": "standard", "distance": 3.516, "atom1_id": "///F/230/N", "atom2_id": "///F/233/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4671, "atom1_serNum": 44970, "atom2_serNum": 44980, "donAcc_type": "standard", "distance": 3.034, "atom1_id": "///F/230/O", "atom2_id": "///F/232/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4672, "atom1_serNum": 45029, "atom2_serNum": 45031, "donAcc_type": "acceptable", "distance": 3.005, "atom1_id": "///F/237/O", "atom2_id": "///F/237/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4673, "atom1_serNum": 45043, "atom2_serNum": 45062, "donAcc_type": "standard", "distance": 3.484, "atom1_id": "///F/239/O", "atom2_id": "///F/242/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4674, "atom1_serNum": 45061, "atom2_serNum": 45075, "donAcc_type": "standard", "distance": 3.340, "atom1_id": "///F/241/O", "atom2_id": "///F/244/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4675, "atom1_serNum": 45102, "atom2_serNum": 45129, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///F/247/N", "atom2_id": "///F/250/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4676, "atom1_serNum": 45105, "atom2_serNum": 45131, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///F/247/O", "atom2_id": "///F/251/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4677, "atom1_serNum": 45112, "atom2_serNum": 45140, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///F/248/O", "atom2_id": "///F/252/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4678, "atom1_serNum": 45120, "atom2_serNum": 45151, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///F/249/O", "atom2_id": "///F/253/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4679, "atom1_serNum": 45125, "atom2_serNum": 45159, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///F/250/O", "atom2_id": "///F/254/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4680, "atom1_serNum": 45134, "atom2_serNum": 45168, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///F/251/O", "atom2_id": "///F/255/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4681, "atom1_serNum": 45143, "atom2_serNum": 45179, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///F/252/O", "atom2_id": "///F/256/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4682, "atom1_serNum": 45154, "atom2_serNum": 45187, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///F/253/O", "atom2_id": "///F/257/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4683, "atom1_serNum": 45162, "atom2_serNum": 45192, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///F/254/O", "atom2_id": "///F/258/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4684, "atom1_serNum": 45171, "atom2_serNum": 45197, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///F/255/O", "atom2_id": "///F/259/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4685, "atom1_serNum": 45182, "atom2_serNum": 45206, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///F/256/O", "atom2_id": "///F/260/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4686, "atom1_serNum": 45190, "atom2_serNum": 45214, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///F/257/O", "atom2_id": "///F/260/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4687, "atom1_serNum": 45190, "atom2_serNum": 45215, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///F/257/O", "atom2_id": "///F/261/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4688, "atom1_serNum": 45195, "atom2_serNum": 45221, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///F/258/O", "atom2_id": "///F/262/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4689, "atom1_serNum": 45195, "atom2_serNum": 45226, "donAcc_type": "acceptable", "distance": 2.903, "atom1_id": "///F/258/O", "atom2_id": "///F/262/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4690, "atom1_serNum": 45200, "atom2_serNum": 45227, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///F/259/O", "atom2_id": "///F/263/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4691, "atom1_serNum": 45233, "atom2_serNum": 59898, "donAcc_type": "standard", "distance": 3.951, "atom1_id": "///G/14/N", "atom2_id": "///R/56/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4692, "atom1_serNum": 45236, "atom2_serNum": 45238, "donAcc_type": "acceptable", "distance": 2.756, "atom1_id": "///G/14/O", "atom2_id": "///G/14/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4693, "atom1_serNum": 45236, "atom2_serNum": 45247, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///G/14/O", "atom2_id": "///G/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4694, "atom1_serNum": 45247, "atom2_serNum": 45253, "donAcc_type": "standard", "distance": 2.571, "atom1_id": "///G/16/N", "atom2_id": "///G/16/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4695, "atom1_serNum": 45253, "atom2_serNum": 45255, "donAcc_type": "standard", "distance": 2.644, "atom1_id": "///G/16/OD1", "atom2_id": "///G/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4696, "atom1_serNum": 45258, "atom2_serNum": 45272, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///G/17/O", "atom2_id": "///G/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4697, "atom1_serNum": 45271, "atom2_serNum": 45522, "donAcc_type": "acceptable", "distance": 3.125, "atom1_id": "///G/18/NZ", "atom2_id": "///G/48/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4698, "atom1_serNum": 45275, "atom2_serNum": 45291, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///G/19/O", "atom2_id": "///G/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4699, "atom1_serNum": 45280, "atom2_serNum": 45307, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///G/20/N", "atom2_id": "///G/23/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4700, "atom1_serNum": 45283, "atom2_serNum": 45295, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///G/20/O", "atom2_id": "///G/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4701, "atom1_serNum": 45294, "atom2_serNum": 59846, "donAcc_type": "acceptable", "distance": 3.604, "atom1_id": "///G/21/O", "atom2_id": "///R/49/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4702, "atom1_serNum": 45321, "atom2_serNum": 45994, "donAcc_type": "standard", "distance": 3.659, "atom1_id": "///G/24/O", "atom2_id": "///G/107/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4703, "atom1_serNum": 45339, "atom2_serNum": 45362, "donAcc_type": "questionable", "distance": 3.380, "atom1_id": "///G/27/N", "atom2_id": "///G/29/NE2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 4704, "atom1_serNum": 45377, "atom2_serNum": 45379, "donAcc_type": "standard", "distance": 2.578, "atom1_id": "///G/31/OD1", "atom2_id": "///G/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4705, "atom1_serNum": 45385, "atom2_serNum": 45387, "donAcc_type": "standard", "distance": 2.532, "atom1_id": "///G/32/OD1", "atom2_id": "///G/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4706, "atom1_serNum": 45398, "atom2_serNum": 45400, "donAcc_type": "acceptable", "distance": 2.994, "atom1_id": "///G/34/O", "atom2_id": "///G/34/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4707, "atom1_serNum": 45449, "atom2_serNum": 45674, "donAcc_type": "standard", "distance": 3.775, "atom1_id": "///G/40/O", "atom2_id": "///G/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4708, "atom1_serNum": 45461, "atom2_serNum": 45476, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///G/42/O", "atom2_id": "///G/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4709, "atom1_serNum": 45500, "atom2_serNum": 60375, "donAcc_type": "acceptable", "distance": 3.618, "atom1_id": "///G/46/O", "atom2_id": "///R/115/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4710, "atom1_serNum": 45510, "atom2_serNum": 60367, "donAcc_type": "standard", "distance": 3.624, "atom1_id": "///G/47/NZ", "atom2_id": "///R/115/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4711, "atom1_serNum": 45526, "atom2_serNum": 45538, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///G/49/O", "atom2_id": "///G/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4712, "atom1_serNum": 45526, "atom2_serNum": 45697, "donAcc_type": "questionable", "distance": 3.262, "atom1_id": "///G/49/O", "atom2_id": "///G/70/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4713, "atom1_serNum": 45534, "atom2_serNum": 45722, "donAcc_type": "acceptable", "distance": 3.829, "atom1_id": "///G/50/O", "atom2_id": "///G/73/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4714, "atom1_serNum": 45541, "atom2_serNum": 59855, "donAcc_type": "standard", "distance": 2.333, "atom1_id": "///G/51/O", "atom2_id": "///R/50/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4715, "atom1_serNum": 45541, "atom2_serNum": 60102, "donAcc_type": "acceptable", "distance": 3.146, "atom1_id": "///G/51/O", "atom2_id": "///R/82/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4716, "atom1_serNum": 45544, "atom2_serNum": 60102, "donAcc_type": "acceptable", "distance": 2.781, "atom1_id": "///G/51/ND1", "atom2_id": "///R/82/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4717, "atom1_serNum": 45548, "atom2_serNum": 45697, "donAcc_type": "standard", "distance": 3.261, "atom1_id": "///G/52/N", "atom2_id": "///G/70/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4718, "atom1_serNum": 45557, "atom2_serNum": 60455, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///G/53/O", "atom2_id": "///R/125/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4719, "atom1_serNum": 45566, "atom2_serNum": 45636, "donAcc_type": "standard", "distance": 3.245, "atom1_id": "///G/55/O", "atom2_id": "///G/62/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4720, "atom1_serNum": 45630, "atom2_serNum": 45652, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///G/62/O", "atom2_id": "///G/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4721, "atom1_serNum": 45641, "atom2_serNum": 45707, "donAcc_type": "standard", "distance": 3.750, "atom1_id": "///G/63/O", "atom2_id": "///G/71/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4722, "atom1_serNum": 45670, "atom2_serNum": 45698, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///G/67/O", "atom2_id": "///G/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4723, "atom1_serNum": 45677, "atom2_serNum": 45709, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///G/68/O", "atom2_id": "///G/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4724, "atom1_serNum": 45685, "atom2_serNum": 45717, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///G/69/O", "atom2_id": "///G/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4725, "atom1_serNum": 45685, "atom2_serNum": 45722, "donAcc_type": "acceptable", "distance": 3.094, "atom1_id": "///G/69/O", "atom2_id": "///G/73/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4726, "atom1_serNum": 45692, "atom2_serNum": 45722, "donAcc_type": "acceptable", "distance": 2.729, "atom1_id": "///G/70/O", "atom2_id": "///G/73/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4727, "atom1_serNum": 45692, "atom2_serNum": 45724, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///G/70/O", "atom2_id": "///G/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4728, "atom1_serNum": 45696, "atom2_serNum": 45824, "donAcc_type": "standard", "distance": 3.535, "atom1_id": "///G/70/OE1", "atom2_id": "///G/86/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4729, "atom1_serNum": 45701, "atom2_serNum": 45737, "donAcc_type": "acceptable", "distance": 3.000, "atom1_id": "///G/71/O", "atom2_id": "///G/75/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4730, "atom1_serNum": 45708, "atom2_serNum": 46307, "donAcc_type": "standard", "distance": 2.487, "atom1_id": "///G/71/NH2", "atom2_id": "///G/148/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4731, "atom1_serNum": 45720, "atom2_serNum": 45738, "donAcc_type": "standard", "distance": 3.273, "atom1_id": "///G/73/O", "atom2_id": "///G/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4732, "atom1_serNum": 45727, "atom2_serNum": 45746, "donAcc_type": "standard", "distance": 3.981, "atom1_id": "///G/74/O", "atom2_id": "///G/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4733, "atom1_serNum": 45735, "atom2_serNum": 46393, "donAcc_type": "standard", "distance": 2.312, "atom1_id": "///G/75/O", "atom2_id": "///G/159/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4734, "atom1_serNum": 45757, "atom2_serNum": 45787, "donAcc_type": "standard", "distance": 3.449, "atom1_id": "///G/78/O", "atom2_id": "///G/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4735, "atom1_serNum": 45762, "atom2_serNum": 45768, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///G/79/N", "atom2_id": "///G/79/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 4736, "atom1_serNum": 45765, "atom2_serNum": 45776, "donAcc_type": "standard", "distance": 2.649, "atom1_id": "///G/79/O", "atom2_id": "///G/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4737, "atom1_serNum": 45790, "atom2_serNum": 45807, "donAcc_type": "standard", "distance": 3.504, "atom1_id": "///G/82/O", "atom2_id": "///G/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4738, "atom1_serNum": 45795, "atom2_serNum": 45801, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///G/83/N", "atom2_id": "///G/83/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4739, "atom1_serNum": 45810, "atom2_serNum": 45846, "donAcc_type": "acceptable", "distance": 3.652, "atom1_id": "///G/85/O", "atom2_id": "///G/89/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4740, "atom1_serNum": 45819, "atom2_serNum": 45846, "donAcc_type": "acceptable", "distance": 2.376, "atom1_id": "///G/86/O", "atom2_id": "///G/89/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4741, "atom1_serNum": 45819, "atom2_serNum": 45848, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///G/86/O", "atom2_id": "///G/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4742, "atom1_serNum": 45828, "atom2_serNum": 45855, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///G/87/O", "atom2_id": "///G/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4743, "atom1_serNum": 45836, "atom2_serNum": 45866, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///G/88/O", "atom2_id": "///G/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4744, "atom1_serNum": 45844, "atom2_serNum": 45874, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///G/89/O", "atom2_id": "///G/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4745, "atom1_serNum": 45851, "atom2_serNum": 45881, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///G/90/O", "atom2_id": "///G/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4746, "atom1_serNum": 45869, "atom2_serNum": 45900, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///G/92/O", "atom2_id": "///G/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4747, "atom1_serNum": 45877, "atom2_serNum": 45905, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///G/93/O", "atom2_id": "///G/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4748, "atom1_serNum": 45884, "atom2_serNum": 45916, "donAcc_type": "standard", "distance": 2.970, "atom1_id": "///G/94/O", "atom2_id": "///G/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4749, "atom1_serNum": 45893, "atom2_serNum": 45925, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///G/95/O", "atom2_id": "///G/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4750, "atom1_serNum": 45896, "atom2_serNum": 69106, "donAcc_type": "acceptable", "distance": 2.988, "atom1_id": "///G/95/ND1", "atom2_id": "///a/106/NE2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 4751, "atom1_serNum": 45903, "atom2_serNum": 45933, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///G/96/O", "atom2_id": "///G/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4752, "atom1_serNum": 45908, "atom2_serNum": 45941, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///G/97/O", "atom2_id": "///G/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4753, "atom1_serNum": 45919, "atom2_serNum": 45951, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///G/98/O", "atom2_id": "///G/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4754, "atom1_serNum": 45928, "atom2_serNum": 45959, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///G/99/O", "atom2_id": "///G/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4755, "atom1_serNum": 45936, "atom2_serNum": 45967, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///G/100/O", "atom2_id": "///G/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4756, "atom1_serNum": 45944, "atom2_serNum": 45974, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///G/101/O", "atom2_id": "///G/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4757, "atom1_serNum": 45962, "atom2_serNum": 68800, "donAcc_type": "standard", "distance": 3.554, "atom1_id": "///G/103/O", "atom2_id": "///a/66/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4758, "atom1_serNum": 45990, "atom2_serNum": 46019, "donAcc_type": "standard", "distance": 3.506, "atom1_id": "///G/107/O", "atom2_id": "///G/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4759, "atom1_serNum": 45993, "atom2_serNum": 45995, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///G/107/OD1", "atom2_id": "///G/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4760, "atom1_serNum": 45993, "atom2_serNum": 46002, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///G/107/OD1", "atom2_id": "///G/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4761, "atom1_serNum": 45998, "atom2_serNum": 46026, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///G/108/O", "atom2_id": "///G/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4762, "atom1_serNum": 46005, "atom2_serNum": 46034, "donAcc_type": "standard", "distance": 3.361, "atom1_id": "///G/109/O", "atom2_id": "///G/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4763, "atom1_serNum": 46022, "atom2_serNum": 46049, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///G/111/O", "atom2_id": "///G/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4764, "atom1_serNum": 46029, "atom2_serNum": 46054, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///G/112/O", "atom2_id": "///G/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4765, "atom1_serNum": 46037, "atom2_serNum": 46062, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///G/113/O", "atom2_id": "///G/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4766, "atom1_serNum": 46044, "atom2_serNum": 46070, "donAcc_type": "standard", "distance": 3.154, "atom1_id": "///G/114/O", "atom2_id": "///G/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4767, "atom1_serNum": 46044, "atom2_serNum": 46077, "donAcc_type": "standard", "distance": 3.146, "atom1_id": "///G/114/O", "atom2_id": "///G/118/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4768, "atom1_serNum": 46052, "atom2_serNum": 46083, "donAcc_type": "acceptable", "distance": 2.872, "atom1_id": "///G/115/O", "atom2_id": "///G/119/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4769, "atom1_serNum": 46065, "atom2_serNum": 46084, "donAcc_type": "standard", "distance": 3.278, "atom1_id": "///G/117/O", "atom2_id": "///G/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4770, "atom1_serNum": 46077, "atom2_serNum": 46552, "donAcc_type": "standard", "distance": 3.578, "atom1_id": "///G/118/ND2", "atom2_id": "///G/180/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4771, "atom1_serNum": 46104, "atom2_serNum": 71070, "donAcc_type": "acceptable", "distance": 3.242, "atom1_id": "///G/122/NH1", "atom2_id": "///d/57/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4772, "atom1_serNum": 46114, "atom2_serNum": 71121, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///G/123/OE2", "atom2_id": "///d/63/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4773, "atom1_serNum": 46114, "atom2_serNum": 71122, "donAcc_type": "standard", "distance": 2.541, "atom1_id": "///G/123/OE2", "atom2_id": "///d/63/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4774, "atom1_serNum": 46115, "atom2_serNum": 46121, "donAcc_type": "standard", "distance": 2.562, "atom1_id": "///G/124/N", "atom2_id": "///G/124/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4775, "atom1_serNum": 46115, "atom2_serNum": 46232, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///G/124/N", "atom2_id": "///G/139/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4776, "atom1_serNum": 46118, "atom2_serNum": 46229, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///G/124/O", "atom2_id": "///G/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4777, "atom1_serNum": 46118, "atom2_serNum": 46232, "donAcc_type": "questionable", "distance": 2.761, "atom1_id": "///G/124/O", "atom2_id": "///G/139/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4778, "atom1_serNum": 46129, "atom2_serNum": 46218, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///G/126/N", "atom2_id": "///G/137/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4779, "atom1_serNum": 46132, "atom2_serNum": 46215, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///G/126/O", "atom2_id": "///G/137/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4780, "atom1_serNum": 46162, "atom2_serNum": 46182, "donAcc_type": "questionable", "distance": 3.075, "atom1_id": "///G/130/O", "atom2_id": "///G/133/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4781, "atom1_serNum": 46168, "atom2_serNum": 46173, "donAcc_type": "standard", "distance": 2.606, "atom1_id": "///G/130/NH1", "atom2_id": "///G/131/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4782, "atom1_serNum": 46173, "atom2_serNum": 46179, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///G/131/O", "atom2_id": "///G/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4783, "atom1_serNum": 46207, "atom2_serNum": 71177, "donAcc_type": "standard", "distance": 3.969, "atom1_id": "///G/136/O", "atom2_id": "///d/69/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4784, "atom1_serNum": 46224, "atom2_serNum": 46725, "donAcc_type": "standard", "distance": 3.567, "atom1_id": "///G/138/N", "atom2_id": "///G/203/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4785, "atom1_serNum": 46236, "atom2_serNum": 70979, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///G/140/N", "atom2_id": "///d/45/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4786, "atom1_serNum": 46239, "atom2_serNum": 70991, "donAcc_type": "standard", "distance": 2.464, "atom1_id": "///G/140/O", "atom2_id": "///d/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4787, "atom1_serNum": 46251, "atom2_serNum": 70994, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///G/142/N", "atom2_id": "///d/47/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4788, "atom1_serNum": 46254, "atom2_serNum": 46283, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///G/142/O", "atom2_id": "///G/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4789, "atom1_serNum": 46256, "atom2_serNum": 71007, "donAcc_type": "acceptable", "distance": 2.601, "atom1_id": "///G/142/OG", "atom2_id": "///d/49/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4790, "atom1_serNum": 46260, "atom2_serNum": 46294, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///G/143/O", "atom2_id": "///G/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4791, "atom1_serNum": 46267, "atom2_serNum": 46301, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///G/144/O", "atom2_id": "///G/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4792, "atom1_serNum": 46275, "atom2_serNum": 46309, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///G/145/O", "atom2_id": "///G/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4793, "atom1_serNum": 46286, "atom2_serNum": 46318, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///G/146/O", "atom2_id": "///G/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4794, "atom1_serNum": 46297, "atom2_serNum": 46323, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///G/147/O", "atom2_id": "///G/151/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4795, "atom1_serNum": 46304, "atom2_serNum": 46331, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///G/148/O", "atom2_id": "///G/152/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4796, "atom1_serNum": 46312, "atom2_serNum": 46345, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///G/149/O", "atom2_id": "///G/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4797, "atom1_serNum": 46321, "atom2_serNum": 46353, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///G/150/O", "atom2_id": "///G/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4798, "atom1_serNum": 46326, "atom2_serNum": 46361, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///G/151/O", "atom2_id": "///G/155/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4799, "atom1_serNum": 46334, "atom2_serNum": 46367, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///G/152/O", "atom2_id": "///G/156/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4800, "atom1_serNum": 46334, "atom2_serNum": 46372, "donAcc_type": "acceptable", "distance": 2.776, "atom1_id": "///G/152/O", "atom2_id": "///G/156/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4801, "atom1_serNum": 46348, "atom2_serNum": 46374, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///G/153/O", "atom2_id": "///G/157/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4802, "atom1_serNum": 46356, "atom2_serNum": 46378, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///G/154/O", "atom2_id": "///G/158/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4803, "atom1_serNum": 46356, "atom2_serNum": 46523, "donAcc_type": "questionable", "distance": 3.028, "atom1_id": "///G/154/O", "atom2_id": "///G/176/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4804, "atom1_serNum": 46364, "atom2_serNum": 46383, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///G/155/O", "atom2_id": "///G/159/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4805, "atom1_serNum": 46370, "atom2_serNum": 46394, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///G/156/O", "atom2_id": "///G/160/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4806, "atom1_serNum": 46377, "atom2_serNum": 46403, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///G/157/O", "atom2_id": "///G/161/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4807, "atom1_serNum": 46381, "atom2_serNum": 46408, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///G/158/O", "atom2_id": "///G/162/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4808, "atom1_serNum": 46406, "atom2_serNum": 46442, "donAcc_type": "standard", "distance": 3.593, "atom1_id": "///G/161/O", "atom2_id": "///G/165/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4809, "atom1_serNum": 46460, "atom2_serNum": 46488, "donAcc_type": "standard", "distance": 3.601, "atom1_id": "///G/168/N", "atom2_id": "///G/171/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4810, "atom1_serNum": 46463, "atom2_serNum": 46489, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///G/168/O", "atom2_id": "///G/172/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4811, "atom1_serNum": 46470, "atom2_serNum": 46495, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///G/169/O", "atom2_id": "///G/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4812, "atom1_serNum": 46483, "atom2_serNum": 46508, "donAcc_type": "standard", "distance": 2.962, "atom1_id": "///G/171/O", "atom2_id": "///G/175/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4813, "atom1_serNum": 46487, "atom2_serNum": 68822, "donAcc_type": "acceptable", "distance": 2.591, "atom1_id": "///G/171/OE1", "atom2_id": "///a/69/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4814, "atom1_serNum": 46492, "atom2_serNum": 46515, "donAcc_type": "questionable", "distance": 2.687, "atom1_id": "///G/172/O", "atom2_id": "///G/175/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4815, "atom1_serNum": 46498, "atom2_serNum": 46516, "donAcc_type": "standard", "distance": 3.432, "atom1_id": "///G/173/O", "atom2_id": "///G/176/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4816, "atom1_serNum": 46498, "atom2_serNum": 46525, "donAcc_type": "standard", "distance": 3.440, "atom1_id": "///G/173/O", "atom2_id": "///G/177/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4817, "atom1_serNum": 46506, "atom2_serNum": 46533, "donAcc_type": "standard", "distance": 3.526, "atom1_id": "///G/174/O", "atom2_id": "///G/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4818, "atom1_serNum": 46511, "atom2_serNum": 46548, "donAcc_type": "standard", "distance": 2.451, "atom1_id": "///G/175/O", "atom2_id": "///G/179/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4819, "atom1_serNum": 46519, "atom2_serNum": 46549, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///G/176/O", "atom2_id": "///G/180/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4820, "atom1_serNum": 46536, "atom2_serNum": 46559, "donAcc_type": "standard", "distance": 3.224, "atom1_id": "///G/178/O", "atom2_id": "///G/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4821, "atom1_serNum": 46544, "atom2_serNum": 46568, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///G/179/O", "atom2_id": "///G/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4822, "atom1_serNum": 46544, "atom2_serNum": 46572, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///G/179/O", "atom2_id": "///G/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4823, "atom1_serNum": 46575, "atom2_serNum": 46583, "donAcc_type": "acceptable", "distance": 2.401, "atom1_id": "///G/184/O", "atom2_id": "///G/185/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4824, "atom1_serNum": 46595, "atom2_serNum": 46623, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///G/187/O", "atom2_id": "///G/191/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4825, "atom1_serNum": 46601, "atom2_serNum": 46632, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///G/188/O", "atom2_id": "///G/192/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4826, "atom1_serNum": 46613, "atom2_serNum": 46641, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///G/189/O", "atom2_id": "///G/193/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4827, "atom1_serNum": 46618, "atom2_serNum": 46650, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///G/190/O", "atom2_id": "///G/194/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4828, "atom1_serNum": 46635, "atom2_serNum": 46667, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///G/192/O", "atom2_id": "///G/196/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4829, "atom1_serNum": 46644, "atom2_serNum": 46675, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///G/193/O", "atom2_id": "///G/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4830, "atom1_serNum": 46653, "atom2_serNum": 46684, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///G/194/O", "atom2_id": "///G/198/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4831, "atom1_serNum": 46656, "atom2_serNum": 46658, "donAcc_type": "standard", "distance": 2.376, "atom1_id": "///G/194/OD1", "atom2_id": "///G/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4832, "atom1_serNum": 46661, "atom2_serNum": 46695, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///G/195/O", "atom2_id": "///G/199/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4833, "atom1_serNum": 46665, "atom2_serNum": 46694, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///G/195/OE1", "atom2_id": "///G/198/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4834, "atom1_serNum": 46670, "atom2_serNum": 46702, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///G/196/O", "atom2_id": "///G/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4835, "atom1_serNum": 46678, "atom2_serNum": 46707, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///G/197/O", "atom2_id": "///G/201/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4836, "atom1_serNum": 46687, "atom2_serNum": 46716, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///G/198/O", "atom2_id": "///G/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4837, "atom1_serNum": 46698, "atom2_serNum": 46728, "donAcc_type": "questionable", "distance": 2.779, "atom1_id": "///G/199/O", "atom2_id": "///G/203/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4838, "atom1_serNum": 46722, "atom2_serNum": 46728, "donAcc_type": "standard", "distance": 2.679, "atom1_id": "///G/203/N", "atom2_id": "///G/203/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4839, "atom1_serNum": 46739, "atom2_serNum": 71096, "donAcc_type": "standard", "distance": 2.676, "atom1_id": "///G/204/NH1", "atom2_id": "///d/60/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4840, "atom1_serNum": 46743, "atom2_serNum": 46872, "donAcc_type": "standard", "distance": 3.596, "atom1_id": "///H/1/N", "atom2_id": "///H/17/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4841, "atom1_serNum": 46746, "atom2_serNum": 46876, "donAcc_type": "questionable", "distance": 3.285, "atom1_id": "///H/1/O", "atom2_id": "///H/18/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4842, "atom1_serNum": 46751, "atom2_serNum": 47587, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///H/2/N", "atom2_id": "///H/107/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4843, "atom1_serNum": 46754, "atom2_serNum": 47597, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///H/2/O", "atom2_id": "///H/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4844, "atom1_serNum": 46760, "atom2_serNum": 46859, "donAcc_type": "standard", "distance": 3.309, "atom1_id": "///H/3/N", "atom2_id": "///H/16/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4845, "atom1_serNum": 46763, "atom2_serNum": 46856, "donAcc_type": "standard", "distance": 3.223, "atom1_id": "///H/3/O", "atom2_id": "///H/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4846, "atom1_serNum": 46768, "atom2_serNum": 47600, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///H/4/N", "atom2_id": "///H/109/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4847, "atom1_serNum": 46771, "atom2_serNum": 47613, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///H/4/O", "atom2_id": "///H/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4848, "atom1_serNum": 46775, "atom2_serNum": 47611, "donAcc_type": "standard", "distance": 3.767, "atom1_id": "///H/4/ND2", "atom2_id": "///H/110/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4849, "atom1_serNum": 46776, "atom2_serNum": 46842, "donAcc_type": "standard", "distance": 3.041, "atom1_id": "///H/5/N", "atom2_id": "///H/14/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4850, "atom1_serNum": 46779, "atom2_serNum": 46839, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///H/5/O", "atom2_id": "///H/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4851, "atom1_serNum": 46784, "atom2_serNum": 47616, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///H/6/N", "atom2_id": "///H/111/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4852, "atom1_serNum": 46787, "atom2_serNum": 46789, "donAcc_type": "acceptable", "distance": 3.145, "atom1_id": "///H/6/O", "atom2_id": "///H/6/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4853, "atom1_serNum": 46787, "atom2_serNum": 47628, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///H/6/O", "atom2_id": "///H/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4854, "atom1_serNum": 46789, "atom2_serNum": 47616, "donAcc_type": "acceptable", "distance": 3.063, "atom1_id": "///H/6/OG", "atom2_id": "///H/111/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4855, "atom1_serNum": 46790, "atom2_serNum": 46827, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///H/7/N", "atom2_id": "///H/12/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4856, "atom1_serNum": 46793, "atom2_serNum": 46820, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///H/7/O", "atom2_id": "///H/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4857, "atom1_serNum": 46793, "atom2_serNum": 46824, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///H/7/O", "atom2_id": "///H/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4858, "atom1_serNum": 46816, "atom2_serNum": 47747, "donAcc_type": "standard", "distance": 3.286, "atom1_id": "///H/10/O", "atom2_id": "///H/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4859, "atom1_serNum": 46818, "atom2_serNum": 47736, "donAcc_type": "acceptable", "distance": 2.746, "atom1_id": "///H/10/OG1", "atom2_id": "///H/127/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4860, "atom1_serNum": 46888, "atom2_serNum": 46894, "donAcc_type": "standard", "distance": 2.709, "atom1_id": "///H/20/N", "atom2_id": "///H/20/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4861, "atom1_serNum": 46903, "atom2_serNum": 46973, "donAcc_type": "acceptable", "distance": 2.874, "atom1_id": "///H/21/OE1", "atom2_id": "///H/28/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4862, "atom1_serNum": 46908, "atom2_serNum": 46942, "donAcc_type": "standard", "distance": 3.385, "atom1_id": "///H/22/O", "atom2_id": "///H/25/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4863, "atom1_serNum": 46928, "atom2_serNum": 46951, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///H/24/O", "atom2_id": "///H/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4864, "atom1_serNum": 46974, "atom2_serNum": 47551, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///H/29/N", "atom2_id": "///H/102/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4865, "atom1_serNum": 46986, "atom2_serNum": 47548, "donAcc_type": "standard", "distance": 3.652, "atom1_id": "///H/30/O", "atom2_id": "///H/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4866, "atom1_serNum": 46995, "atom2_serNum": 47021, "donAcc_type": "acceptable", "distance": 3.523, "atom1_id": "///H/31/O", "atom2_id": "///H/34/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4867, "atom1_serNum": 47019, "atom2_serNum": 47032, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///H/34/O", "atom2_id": "///H/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4868, "atom1_serNum": 47019, "atom2_serNum": 47156, "donAcc_type": "standard", "distance": 3.791, "atom1_id": "///H/34/O", "atom2_id": "///H/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4869, "atom1_serNum": 47032, "atom2_serNum": 47141, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///H/36/N", "atom2_id": "///H/50/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4870, "atom1_serNum": 47042, "atom2_serNum": 47049, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///H/37/O", "atom2_id": "///H/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4871, "atom1_serNum": 47044, "atom2_serNum": 47122, "donAcc_type": "standard", "distance": 3.424, "atom1_id": "///H/38/N", "atom2_id": "///H/48/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4872, "atom1_serNum": 47047, "atom2_serNum": 47095, "donAcc_type": "questionable", "distance": 2.870, "atom1_id": "///H/38/O", "atom2_id": "///H/45/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4873, "atom1_serNum": 47049, "atom2_serNum": 47055, "donAcc_type": "standard", "distance": 2.528, "atom1_id": "///H/39/N", "atom2_id": "///H/39/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4874, "atom1_serNum": 47055, "atom2_serNum": 47057, "donAcc_type": "standard", "distance": 3.152, "atom1_id": "///H/39/OD1", "atom2_id": "///H/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4875, "atom1_serNum": 47074, "atom2_serNum": 47082, "donAcc_type": "standard", "distance": 2.640, "atom1_id": "///H/43/N", "atom2_id": "///H/43/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4876, "atom1_serNum": 47109, "atom2_serNum": 47665, "donAcc_type": "standard", "distance": 3.327, "atom1_id": "///H/46/O", "atom2_id": "///H/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4877, "atom1_serNum": 47118, "atom2_serNum": 47131, "donAcc_type": "standard", "distance": 3.151, "atom1_id": "///H/47/O", "atom2_id": "///H/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4878, "atom1_serNum": 47122, "atom2_serNum": 47138, "donAcc_type": "standard", "distance": 3.080, "atom1_id": "///H/48/O", "atom2_id": "///H/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4879, "atom1_serNum": 47130, "atom2_serNum": 47691, "donAcc_type": "acceptable", "distance": 3.401, "atom1_id": "///H/48/OH", "atom2_id": "///H/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4880, "atom1_serNum": 47131, "atom2_serNum": 47646, "donAcc_type": "standard", "distance": 3.186, "atom1_id": "///H/49/N", "atom2_id": "///H/115/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4881, "atom1_serNum": 47134, "atom2_serNum": 47636, "donAcc_type": "standard", "distance": 2.415, "atom1_id": "///H/49/O", "atom2_id": "///H/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4882, "atom1_serNum": 47134, "atom2_serNum": 47643, "donAcc_type": "standard", "distance": 3.461, "atom1_id": "///H/49/O", "atom2_id": "///H/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4883, "atom1_serNum": 47145, "atom2_serNum": 47624, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///H/51/N", "atom2_id": "///H/112/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4884, "atom1_serNum": 47148, "atom2_serNum": 47621, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///H/51/O", "atom2_id": "///H/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4885, "atom1_serNum": 47164, "atom2_serNum": 47608, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///H/53/N", "atom2_id": "///H/110/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4886, "atom1_serNum": 47173, "atom2_serNum": 47612, "donAcc_type": "standard", "distance": 2.409, "atom1_id": "///H/54/O", "atom2_id": "///H/110/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4887, "atom1_serNum": 47177, "atom2_serNum": 47234, "donAcc_type": "standard", "distance": 3.067, "atom1_id": "///H/55/O", "atom2_id": "///H/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4888, "atom1_serNum": 47178, "atom2_serNum": 47593, "donAcc_type": "standard", "distance": 3.469, "atom1_id": "///H/56/N", "atom2_id": "///H/108/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4889, "atom1_serNum": 47181, "atom2_serNum": 47584, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///H/56/O", "atom2_id": "///H/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4890, "atom1_serNum": 47181, "atom2_serNum": 47590, "donAcc_type": "standard", "distance": 3.451, "atom1_id": "///H/56/O", "atom2_id": "///H/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4891, "atom1_serNum": 47186, "atom2_serNum": 47219, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///H/57/N", "atom2_id": "///H/61/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4892, "atom1_serNum": 47189, "atom2_serNum": 47212, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///H/57/O", "atom2_id": "///H/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4893, "atom1_serNum": 47192, "atom2_serNum": 47526, "donAcc_type": "standard", "distance": 3.182, "atom1_id": "///H/57/OD1", "atom2_id": "///H/98/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4894, "atom1_serNum": 47192, "atom2_serNum": 47571, "donAcc_type": "questionable", "distance": 2.881, "atom1_id": "///H/57/OD1", "atom2_id": "///H/105/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4895, "atom1_serNum": 47193, "atom2_serNum": 47203, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///H/57/OD2", "atom2_id": "///H/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4896, "atom1_serNum": 47230, "atom2_serNum": 47519, "donAcc_type": "standard", "distance": 3.297, "atom1_id": "///H/62/O", "atom2_id": "///H/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4897, "atom1_serNum": 47242, "atom2_serNum": 47522, "donAcc_type": "standard", "distance": 3.198, "atom1_id": "///H/64/N", "atom2_id": "///H/98/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4898, "atom1_serNum": 47274, "atom2_serNum": 47284, "donAcc_type": "acceptable", "distance": 2.898, "atom1_id": "///H/68/O", "atom2_id": "///H/69/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4899, "atom1_serNum": 47282, "atom2_serNum": 47534, "donAcc_type": "standard", "distance": 3.207, "atom1_id": "///H/69/O", "atom2_id": "///H/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4900, "atom1_serNum": 47282, "atom2_serNum": 47540, "donAcc_type": "standard", "distance": 3.354, "atom1_id": "///H/69/O", "atom2_id": "///H/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4901, "atom1_serNum": 47292, "atom2_serNum": 47562, "donAcc_type": "acceptable", "distance": 3.990, "atom1_id": "///H/70/ND1", "atom2_id": "///H/103/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4902, "atom1_serNum": 47299, "atom2_serNum": 47530, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///H/71/O", "atom2_id": "///H/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4903, "atom1_serNum": 47311, "atom2_serNum": 47515, "donAcc_type": "standard", "distance": 3.193, "atom1_id": "///H/73/N", "atom2_id": "///H/97/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4904, "atom1_serNum": 47314, "atom2_serNum": 47512, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///H/73/O", "atom2_id": "///H/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4905, "atom1_serNum": 47321, "atom2_serNum": 47495, "donAcc_type": "standard", "distance": 3.369, "atom1_id": "///H/74/O", "atom2_id": "///H/94/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4906, "atom1_serNum": 47329, "atom2_serNum": 47500, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///H/75/N", "atom2_id": "///H/95/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4907, "atom1_serNum": 47332, "atom2_serNum": 47497, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///H/75/O", "atom2_id": "///H/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4908, "atom1_serNum": 47345, "atom2_serNum": 47480, "donAcc_type": "standard", "distance": 3.424, "atom1_id": "///H/77/N", "atom2_id": "///H/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4909, "atom1_serNum": 47348, "atom2_serNum": 47477, "donAcc_type": "standard", "distance": 3.813, "atom1_id": "///H/77/O", "atom2_id": "///H/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4910, "atom1_serNum": 47356, "atom2_serNum": 47372, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///H/78/O", "atom2_id": "///H/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4911, "atom1_serNum": 47356, "atom2_serNum": 47378, "donAcc_type": "acceptable", "distance": 3.003, "atom1_id": "///H/78/O", "atom2_id": "///H/81/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4912, "atom1_serNum": 47435, "atom2_serNum": 47464, "donAcc_type": "standard", "distance": 3.072, "atom1_id": "///H/88/N", "atom2_id": "///H/91/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4913, "atom1_serNum": 47438, "atom2_serNum": 47457, "donAcc_type": "standard", "distance": 3.101, "atom1_id": "///H/88/O", "atom2_id": "///H/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4914, "atom1_serNum": 47526, "atom2_serNum": 47571, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///H/98/NE", "atom2_id": "///H/105/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4915, "atom1_serNum": 47528, "atom2_serNum": 47533, "donAcc_type": "standard", "distance": 2.500, "atom1_id": "///H/98/NH1", "atom2_id": "///H/99/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4916, "atom1_serNum": 47528, "atom2_serNum": 47543, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///H/98/NH1", "atom2_id": "///H/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4917, "atom1_serNum": 47566, "atom2_serNum": 47576, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///H/104/O", "atom2_id": "///H/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4918, "atom1_serNum": 47660, "atom2_serNum": 47677, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///H/116/NZ", "atom2_id": "///H/119/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4919, "atom1_serNum": 47689, "atom2_serNum": 47723, "donAcc_type": "acceptable", "distance": 2.397, "atom1_id": "///H/120/OD1", "atom2_id": "///H/125/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4920, "atom1_serNum": 47694, "atom2_serNum": 47723, "donAcc_type": "acceptable", "distance": 3.239, "atom1_id": "///H/121/O", "atom2_id": "///H/125/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4921, "atom1_serNum": 47725, "atom2_serNum": 47731, "donAcc_type": "standard", "distance": 2.534, "atom1_id": "///H/126/N", "atom2_id": "///H/126/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4922, "atom1_serNum": 47731, "atom2_serNum": 47733, "donAcc_type": "standard", "distance": 2.694, "atom1_id": "///H/126/OD1", "atom2_id": "///H/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4923, "atom1_serNum": 47768, "atom2_serNum": 47786, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///H/131/NE", "atom2_id": "///H/133/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4924, "atom1_serNum": 47771, "atom2_serNum": 47786, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///H/131/NH2", "atom2_id": "///H/133/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4925, "atom1_serNum": 47805, "atom2_serNum": 48146, "donAcc_type": "standard", "distance": 3.767, "atom1_id": "///H/136/O", "atom2_id": "///H/177/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4926, "atom1_serNum": 47810, "atom2_serNum": 48132, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///H/136/NZ", "atom2_id": "///H/175/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4927, "atom1_serNum": 47814, "atom2_serNum": 47844, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///H/137/O", "atom2_id": "///H/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4928, "atom1_serNum": 47822, "atom2_serNum": 48149, "donAcc_type": "standard", "distance": 3.597, "atom1_id": "///H/138/N", "atom2_id": "///H/177/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4929, "atom1_serNum": 47825, "atom2_serNum": 47852, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///H/138/O", "atom2_id": "///H/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4930, "atom1_serNum": 47830, "atom2_serNum": 47863, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///H/139/O", "atom2_id": "///H/143/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4931, "atom1_serNum": 47836, "atom2_serNum": 47872, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///H/140/O", "atom2_id": "///H/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4932, "atom1_serNum": 47847, "atom2_serNum": 47880, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///H/141/O", "atom2_id": "///H/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4933, "atom1_serNum": 47855, "atom2_serNum": 47891, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///H/142/O", "atom2_id": "///H/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4934, "atom1_serNum": 47855, "atom2_serNum": 47899, "donAcc_type": "standard", "distance": 3.123, "atom1_id": "///H/142/O", "atom2_id": "///H/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4935, "atom1_serNum": 47907, "atom2_serNum": 47938, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///H/148/N", "atom2_id": "///H/151/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4936, "atom1_serNum": 47912, "atom2_serNum": 47922, "donAcc_type": "acceptable", "distance": 3.620, "atom1_id": "///H/148/OG", "atom2_id": "///H/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4937, "atom1_serNum": 47931, "atom2_serNum": 47937, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///H/151/N", "atom2_id": "///H/151/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4938, "atom1_serNum": 47945, "atom2_serNum": 47947, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///H/152/OD1", "atom2_id": "///H/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4939, "atom1_serNum": 47945, "atom2_serNum": 47954, "donAcc_type": "standard", "distance": 3.220, "atom1_id": "///H/152/OD1", "atom2_id": "///H/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4940, "atom1_serNum": 47945, "atom2_serNum": 47965, "donAcc_type": "standard", "distance": 3.440, "atom1_id": "///H/152/OD1", "atom2_id": "///H/155/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4941, "atom1_serNum": 47946, "atom2_serNum": 47972, "donAcc_type": "questionable", "distance": 2.922, "atom1_id": "///H/152/OD2", "atom2_id": "///H/155/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4942, "atom1_serNum": 48011, "atom2_serNum": 48111, "donAcc_type": "standard", "distance": 3.549, "atom1_id": "///H/160/N", "atom2_id": "///H/172/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4943, "atom1_serNum": 48014, "atom2_serNum": 48108, "donAcc_type": "standard", "distance": 3.365, "atom1_id": "///H/160/O", "atom2_id": "///H/172/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4944, "atom1_serNum": 48027, "atom2_serNum": 48093, "donAcc_type": "standard", "distance": 2.557, "atom1_id": "///H/162/N", "atom2_id": "///H/170/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4945, "atom1_serNum": 48030, "atom2_serNum": 48090, "donAcc_type": "standard", "distance": 3.133, "atom1_id": "///H/162/O", "atom2_id": "///H/170/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4946, "atom1_serNum": 48035, "atom2_serNum": 48041, "donAcc_type": "standard", "distance": 2.695, "atom1_id": "///H/163/N", "atom2_id": "///H/163/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4947, "atom1_serNum": 48046, "atom2_serNum": 48061, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///H/164/O", "atom2_id": "///H/166/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4948, "atom1_serNum": 48046, "atom2_serNum": 48068, "donAcc_type": "questionable", "distance": 3.324, "atom1_id": "///H/164/O", "atom2_id": "///H/167/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4949, "atom1_serNum": 48051, "atom2_serNum": 48073, "donAcc_type": "questionable", "distance": 3.319, "atom1_id": "///H/164/NZ", "atom2_id": "///H/167/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 4950, "atom1_serNum": 48052, "atom2_serNum": 48059, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///H/165/N", "atom2_id": "///H/165/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4951, "atom1_serNum": 48132, "atom2_serNum": 48146, "donAcc_type": "standard", "distance": 3.277, "atom1_id": "///H/175/O", "atom2_id": "///H/177/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4952, "atom1_serNum": 48153, "atom2_serNum": 48155, "donAcc_type": "standard", "distance": 3.397, "atom1_id": "///H/177/OE1", "atom2_id": "///H/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4953, "atom1_serNum": 48184, "atom2_serNum": 48213, "donAcc_type": "standard", "distance": 3.441, "atom1_id": "///H/181/O", "atom2_id": "///H/185/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4954, "atom1_serNum": 48191, "atom2_serNum": 48221, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///H/182/O", "atom2_id": "///H/186/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4955, "atom1_serNum": 48198, "atom2_serNum": 48230, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///H/183/O", "atom2_id": "///H/187/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4956, "atom1_serNum": 48198, "atom2_serNum": 48236, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///H/183/O", "atom2_id": "///H/187/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4957, "atom1_serNum": 48209, "atom2_serNum": 48240, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///H/184/O", "atom2_id": "///H/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4958, "atom1_serNum": 48216, "atom2_serNum": 48249, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///H/185/O", "atom2_id": "///H/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4959, "atom1_serNum": 48224, "atom2_serNum": 48260, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///H/186/O", "atom2_id": "///H/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4960, "atom1_serNum": 48233, "atom2_serNum": 48271, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///H/187/O", "atom2_id": "///H/191/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4961, "atom1_serNum": 48243, "atom2_serNum": 48282, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///H/188/O", "atom2_id": "///H/192/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4962, "atom1_serNum": 48252, "atom2_serNum": 48290, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///H/189/O", "atom2_id": "///H/193/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4963, "atom1_serNum": 48263, "atom2_serNum": 48295, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///H/190/O", "atom2_id": "///H/194/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4964, "atom1_serNum": 48274, "atom2_serNum": 48303, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///H/191/O", "atom2_id": "///H/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4965, "atom1_serNum": 48285, "atom2_serNum": 48312, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///H/192/O", "atom2_id": "///H/196/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4966, "atom1_serNum": 48293, "atom2_serNum": 48321, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///H/193/O", "atom2_id": "///H/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4967, "atom1_serNum": 48298, "atom2_serNum": 48330, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///H/194/O", "atom2_id": "///H/198/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4968, "atom1_serNum": 48306, "atom2_serNum": 48341, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///H/195/O", "atom2_id": "///H/199/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4969, "atom1_serNum": 48306, "atom2_serNum": 48346, "donAcc_type": "acceptable", "distance": 2.943, "atom1_id": "///H/195/O", "atom2_id": "///H/199/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 4970, "atom1_serNum": 48315, "atom2_serNum": 48348, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///H/196/O", "atom2_id": "///H/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4971, "atom1_serNum": 48324, "atom2_serNum": 48357, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///H/197/O", "atom2_id": "///H/201/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4972, "atom1_serNum": 48333, "atom2_serNum": 48366, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///H/198/O", "atom2_id": "///H/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4973, "atom1_serNum": 48344, "atom2_serNum": 48374, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///H/199/O", "atom2_id": "///H/203/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4974, "atom1_serNum": 48351, "atom2_serNum": 48383, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///H/200/O", "atom2_id": "///H/204/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4975, "atom1_serNum": 48360, "atom2_serNum": 48392, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///H/201/O", "atom2_id": "///H/205/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4976, "atom1_serNum": 48365, "atom2_serNum": 48372, "donAcc_type": "standard", "distance": 3.560, "atom1_id": "///H/201/NZ", "atom2_id": "///H/202/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 4977, "atom1_serNum": 48369, "atom2_serNum": 48401, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///H/202/O", "atom2_id": "///H/206/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4978, "atom1_serNum": 48377, "atom2_serNum": 48406, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///H/203/O", "atom2_id": "///H/207/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4979, "atom1_serNum": 48386, "atom2_serNum": 48411, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///H/204/O", "atom2_id": "///H/208/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4980, "atom1_serNum": 48395, "atom2_serNum": 48420, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///H/205/O", "atom2_id": "///H/209/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4981, "atom1_serNum": 48404, "atom2_serNum": 48432, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///H/206/O", "atom2_id": "///H/210/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4982, "atom1_serNum": 48409, "atom2_serNum": 48437, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///H/207/O", "atom2_id": "///H/211/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4983, "atom1_serNum": 48414, "atom2_serNum": 48446, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///H/208/O", "atom2_id": "///H/212/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4984, "atom1_serNum": 48423, "atom2_serNum": 48454, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///H/209/O", "atom2_id": "///H/213/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4985, "atom1_serNum": 48435, "atom2_serNum": 48462, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///H/210/O", "atom2_id": "///H/214/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4986, "atom1_serNum": 48440, "atom2_serNum": 48445, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///H/211/O", "atom2_id": "///H/211/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4987, "atom1_serNum": 48440, "atom2_serNum": 48467, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///H/211/O", "atom2_id": "///H/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4988, "atom1_serNum": 48449, "atom2_serNum": 48476, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///H/212/O", "atom2_id": "///H/216/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4989, "atom1_serNum": 48457, "atom2_serNum": 48487, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///H/213/O", "atom2_id": "///H/217/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4990, "atom1_serNum": 48465, "atom2_serNum": 48495, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///H/214/O", "atom2_id": "///H/218/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4991, "atom1_serNum": 48470, "atom2_serNum": 48504, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///H/215/O", "atom2_id": "///H/219/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4992, "atom1_serNum": 48479, "atom2_serNum": 48513, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///H/216/O", "atom2_id": "///H/220/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4993, "atom1_serNum": 48490, "atom2_serNum": 48518, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///H/217/O", "atom2_id": "///H/221/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4994, "atom1_serNum": 48498, "atom2_serNum": 48527, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///H/218/O", "atom2_id": "///H/222/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4995, "atom1_serNum": 48507, "atom2_serNum": 48536, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///H/219/O", "atom2_id": "///H/223/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4996, "atom1_serNum": 48516, "atom2_serNum": 48545, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///H/220/O", "atom2_id": "///H/224/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4997, "atom1_serNum": 48521, "atom2_serNum": 48556, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///H/221/O", "atom2_id": "///H/225/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4998, "atom1_serNum": 48530, "atom2_serNum": 48565, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///H/222/O", "atom2_id": "///H/226/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 4999, "atom1_serNum": 48539, "atom2_serNum": 48574, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///H/223/O", "atom2_id": "///H/227/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5000, "atom1_serNum": 48544, "atom2_serNum": 48573, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///H/223/NZ", "atom2_id": "///H/226/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5001, "atom1_serNum": 48548, "atom2_serNum": 48583, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///H/224/O", "atom2_id": "///H/228/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5002, "atom1_serNum": 48559, "atom2_serNum": 48591, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///H/225/O", "atom2_id": "///H/229/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5003, "atom1_serNum": 48568, "atom2_serNum": 48596, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///H/226/O", "atom2_id": "///H/230/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5004, "atom1_serNum": 48577, "atom2_serNum": 48605, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///H/227/O", "atom2_id": "///H/231/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5005, "atom1_serNum": 48586, "atom2_serNum": 48616, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///H/228/O", "atom2_id": "///H/232/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5006, "atom1_serNum": 48594, "atom2_serNum": 48627, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///H/229/O", "atom2_id": "///H/233/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5007, "atom1_serNum": 48599, "atom2_serNum": 48638, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///H/230/O", "atom2_id": "///H/234/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5008, "atom1_serNum": 48608, "atom2_serNum": 48646, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///H/231/O", "atom2_id": "///H/235/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5009, "atom1_serNum": 48608, "atom2_serNum": 48651, "donAcc_type": "acceptable", "distance": 2.892, "atom1_id": "///H/231/O", "atom2_id": "///H/235/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5010, "atom1_serNum": 48619, "atom2_serNum": 48651, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///H/232/O", "atom2_id": "///H/235/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5011, "atom1_serNum": 48619, "atom2_serNum": 48652, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///H/232/O", "atom2_id": "///H/236/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5012, "atom1_serNum": 48619, "atom2_serNum": 48657, "donAcc_type": "acceptable", "distance": 2.901, "atom1_id": "///H/232/O", "atom2_id": "///H/236/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5013, "atom1_serNum": 48630, "atom2_serNum": 48658, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///H/233/O", "atom2_id": "///H/237/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5014, "atom1_serNum": 48641, "atom2_serNum": 48658, "donAcc_type": "standard", "distance": 3.277, "atom1_id": "///H/234/O", "atom2_id": "///H/237/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5015, "atom1_serNum": 48672, "atom2_serNum": 48809, "donAcc_type": "acceptable", "distance": 3.830, "atom1_id": "///I/7/N", "atom2_id": "///I/24/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5016, "atom1_serNum": 48675, "atom2_serNum": 48974, "donAcc_type": "questionable", "distance": 3.366, "atom1_id": "///I/7/O", "atom2_id": "///I/45/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5017, "atom1_serNum": 48689, "atom2_serNum": 48974, "donAcc_type": "standard", "distance": 3.319, "atom1_id": "///I/9/N", "atom2_id": "///I/45/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5018, "atom1_serNum": 48692, "atom2_serNum": 48982, "donAcc_type": "questionable", "distance": 2.845, "atom1_id": "///I/9/O", "atom2_id": "///I/46/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5019, "atom1_serNum": 48712, "atom2_serNum": 48718, "donAcc_type": "standard", "distance": 2.709, "atom1_id": "///I/12/N", "atom2_id": "///I/12/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5020, "atom1_serNum": 48715, "atom2_serNum": 48724, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///I/12/O", "atom2_id": "///I/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5021, "atom1_serNum": 48752, "atom2_serNum": 48786, "donAcc_type": "standard", "distance": 3.294, "atom1_id": "///I/17/O", "atom2_id": "///I/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5022, "atom1_serNum": 48755, "atom2_serNum": 48757, "donAcc_type": "standard", "distance": 2.562, "atom1_id": "///I/17/OD1", "atom2_id": "///I/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5023, "atom1_serNum": 48760, "atom2_serNum": 48791, "donAcc_type": "acceptable", "distance": 2.761, "atom1_id": "///I/18/O", "atom2_id": "///I/21/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5024, "atom1_serNum": 48760, "atom2_serNum": 48792, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///I/18/O", "atom2_id": "///I/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5025, "atom1_serNum": 48769, "atom2_serNum": 48796, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///I/19/O", "atom2_id": "///I/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5026, "atom1_serNum": 48777, "atom2_serNum": 48784, "donAcc_type": "standard", "distance": 2.481, "atom1_id": "///I/20/N", "atom2_id": "///I/20/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5027, "atom1_serNum": 48780, "atom2_serNum": 48804, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///I/20/O", "atom2_id": "///I/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5028, "atom1_serNum": 48789, "atom2_serNum": 48810, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///I/21/O", "atom2_id": "///I/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5029, "atom1_serNum": 48795, "atom2_serNum": 48819, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///I/22/O", "atom2_id": "///I/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5030, "atom1_serNum": 48799, "atom2_serNum": 48824, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///I/23/O", "atom2_id": "///I/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5031, "atom1_serNum": 48807, "atom2_serNum": 48832, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///I/24/O", "atom2_id": "///I/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5032, "atom1_serNum": 48813, "atom2_serNum": 48840, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///I/25/O", "atom2_id": "///I/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5033, "atom1_serNum": 48822, "atom2_serNum": 48849, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///I/26/O", "atom2_id": "///I/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5034, "atom1_serNum": 48827, "atom2_serNum": 48857, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///I/27/O", "atom2_id": "///I/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5035, "atom1_serNum": 48835, "atom2_serNum": 48865, "donAcc_type": "questionable", "distance": 3.263, "atom1_id": "///I/28/O", "atom2_id": "///I/31/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5036, "atom1_serNum": 48835, "atom2_serNum": 48866, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///I/28/O", "atom2_id": "///I/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5037, "atom1_serNum": 48843, "atom2_serNum": 48874, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///I/29/O", "atom2_id": "///I/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5038, "atom1_serNum": 48852, "atom2_serNum": 48882, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///I/30/O", "atom2_id": "///I/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5039, "atom1_serNum": 48869, "atom2_serNum": 48912, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///I/32/O", "atom2_id": "///I/37/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5040, "atom1_serNum": 48885, "atom2_serNum": 48912, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///I/34/O", "atom2_id": "///I/37/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5041, "atom1_serNum": 48899, "atom2_serNum": 48918, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///I/36/O", "atom2_id": "///I/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5042, "atom1_serNum": 48899, "atom2_serNum": 48927, "donAcc_type": "standard", "distance": 3.262, "atom1_id": "///I/36/O", "atom2_id": "///I/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5043, "atom1_serNum": 48907, "atom2_serNum": 48944, "donAcc_type": "standard", "distance": 2.350, "atom1_id": "///I/37/O", "atom2_id": "///I/41/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5044, "atom1_serNum": 48916, "atom2_serNum": 48944, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///I/38/O", "atom2_id": "///I/41/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5045, "atom1_serNum": 48916, "atom2_serNum": 48945, "donAcc_type": "standard", "distance": 2.299, "atom1_id": "///I/38/O", "atom2_id": "///I/41/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5046, "atom1_serNum": 48918, "atom2_serNum": 48925, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///I/39/N", "atom2_id": "///I/39/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5047, "atom1_serNum": 48946, "atom2_serNum": 48953, "donAcc_type": "standard", "distance": 2.595, "atom1_id": "///I/42/N", "atom2_id": "///I/42/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5048, "atom1_serNum": 48949, "atom2_serNum": 48963, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///I/42/O", "atom2_id": "///I/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5049, "atom1_serNum": 48963, "atom2_serNum": 48969, "donAcc_type": "standard", "distance": 2.714, "atom1_id": "///I/44/N", "atom2_id": "///I/44/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5050, "atom1_serNum": 48969, "atom2_serNum": 49145, "donAcc_type": "questionable", "distance": 3.245, "atom1_id": "///I/44/OD1", "atom2_id": "///I/68/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5051, "atom1_serNum": 48979, "atom2_serNum": 49102, "donAcc_type": "standard", "distance": 3.359, "atom1_id": "///I/46/N", "atom2_id": "///I/63/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5052, "atom1_serNum": 48989, "atom2_serNum": 49099, "donAcc_type": "standard", "distance": 3.202, "atom1_id": "///I/47/O", "atom2_id": "///I/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5053, "atom1_serNum": 48996, "atom2_serNum": 49086, "donAcc_type": "standard", "distance": 3.096, "atom1_id": "///I/49/N", "atom2_id": "///I/61/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5054, "atom1_serNum": 48999, "atom2_serNum": 49083, "donAcc_type": "standard", "distance": 3.194, "atom1_id": "///I/49/O", "atom2_id": "///I/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5055, "atom1_serNum": 49014, "atom2_serNum": 49073, "donAcc_type": "standard", "distance": 3.658, "atom1_id": "///I/51/N", "atom2_id": "///I/59/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5056, "atom1_serNum": 49030, "atom2_serNum": 49034, "donAcc_type": "questionable", "distance": 3.348, "atom1_id": "///I/52/OE2", "atom2_id": "///I/53/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5057, "atom1_serNum": 49030, "atom2_serNum": 49045, "donAcc_type": "questionable", "distance": 2.969, "atom1_id": "///I/52/OE2", "atom2_id": "///I/55/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5058, "atom1_serNum": 49034, "atom2_serNum": 49045, "donAcc_type": "questionable", "distance": 3.248, "atom1_id": "///I/53/O", "atom2_id": "///I/55/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5059, "atom1_serNum": 49041, "atom2_serNum": 49060, "donAcc_type": "standard", "distance": 2.390, "atom1_id": "///I/54/O", "atom2_id": "///I/57/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5060, "atom1_serNum": 49064, "atom2_serNum": 49334, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///I/58/O", "atom2_id": "///I/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5061, "atom1_serNum": 49075, "atom2_serNum": 49337, "donAcc_type": "standard", "distance": 2.560, "atom1_id": "///I/60/N", "atom2_id": "///I/91/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5062, "atom1_serNum": 49078, "atom2_serNum": 49351, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///I/60/O", "atom2_id": "///I/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5063, "atom1_serNum": 49091, "atom2_serNum": 49354, "donAcc_type": "standard", "distance": 3.277, "atom1_id": "///I/62/N", "atom2_id": "///I/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5064, "atom1_serNum": 49094, "atom2_serNum": 49369, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///I/62/O", "atom2_id": "///I/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5065, "atom1_serNum": 49094, "atom2_serNum": 49372, "donAcc_type": "questionable", "distance": 2.852, "atom1_id": "///I/62/O", "atom2_id": "///I/95/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5066, "atom1_serNum": 49110, "atom2_serNum": 49372, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///I/64/N", "atom2_id": "///I/95/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5067, "atom1_serNum": 49113, "atom2_serNum": 49382, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///I/64/O", "atom2_id": "///I/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5068, "atom1_serNum": 49120, "atom2_serNum": 49147, "donAcc_type": "standard", "distance": 3.193, "atom1_id": "///I/65/O", "atom2_id": "///I/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5069, "atom1_serNum": 49127, "atom2_serNum": 49147, "donAcc_type": "standard", "distance": 3.252, "atom1_id": "///I/66/O", "atom2_id": "///I/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5070, "atom1_serNum": 49141, "atom2_serNum": 49169, "donAcc_type": "acceptable", "distance": 2.504, "atom1_id": "///I/68/O", "atom2_id": "///I/71/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5071, "atom1_serNum": 49141, "atom2_serNum": 49170, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///I/68/O", "atom2_id": "///I/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5072, "atom1_serNum": 49150, "atom2_serNum": 49181, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///I/69/O", "atom2_id": "///I/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5073, "atom1_serNum": 49158, "atom2_serNum": 49198, "donAcc_type": "standard", "distance": 3.842, "atom1_id": "///I/70/O", "atom2_id": "///I/74/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5074, "atom1_serNum": 49167, "atom2_serNum": 49198, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///I/71/O", "atom2_id": "///I/74/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5075, "atom1_serNum": 49173, "atom2_serNum": 49199, "donAcc_type": "standard", "distance": 2.689, "atom1_id": "///I/72/O", "atom2_id": "///I/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5076, "atom1_serNum": 49202, "atom2_serNum": 49223, "donAcc_type": "standard", "distance": 3.201, "atom1_id": "///I/75/O", "atom2_id": "///I/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5077, "atom1_serNum": 49202, "atom2_serNum": 49234, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///I/75/O", "atom2_id": "///I/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5078, "atom1_serNum": 49226, "atom2_serNum": 49260, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///I/78/O", "atom2_id": "///I/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5079, "atom1_serNum": 49237, "atom2_serNum": 49269, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///I/79/O", "atom2_id": "///I/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5080, "atom1_serNum": 49245, "atom2_serNum": 49277, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///I/80/O", "atom2_id": "///I/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5081, "atom1_serNum": 49252, "atom2_serNum": 49286, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///I/81/O", "atom2_id": "///I/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5082, "atom1_serNum": 49259, "atom2_serNum": 49908, "donAcc_type": "standard", "distance": 3.903, "atom1_id": "///I/81/NH2", "atom2_id": "///I/165/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5083, "atom1_serNum": 49263, "atom2_serNum": 49295, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///I/82/O", "atom2_id": "///I/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5084, "atom1_serNum": 49267, "atom2_serNum": 49294, "donAcc_type": "standard", "distance": 3.126, "atom1_id": "///I/82/OE1", "atom2_id": "///I/85/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5085, "atom1_serNum": 49272, "atom2_serNum": 49304, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///I/83/O", "atom2_id": "///I/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5086, "atom1_serNum": 49284, "atom2_serNum": 49318, "donAcc_type": "questionable", "distance": 3.105, "atom1_id": "///I/84/OE1", "atom2_id": "///I/88/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5087, "atom1_serNum": 49285, "atom2_serNum": 49328, "donAcc_type": "questionable", "distance": 2.841, "atom1_id": "///I/84/OE2", "atom2_id": "///I/90/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5088, "atom1_serNum": 49285, "atom2_serNum": 49344, "donAcc_type": "standard", "distance": 3.962, "atom1_id": "///I/84/OE2", "atom2_id": "///I/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5089, "atom1_serNum": 49318, "atom2_serNum": 49325, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///I/88/O", "atom2_id": "///I/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5090, "atom1_serNum": 49401, "atom2_serNum": 49647, "donAcc_type": "standard", "distance": 3.987, "atom1_id": "///I/98/NH2", "atom2_id": "///I/132/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5091, "atom1_serNum": 49421, "atom2_serNum": 49550, "donAcc_type": "standard", "distance": 3.632, "atom1_id": "///I/101/N", "atom2_id": "///I/120/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5092, "atom1_serNum": 49424, "atom2_serNum": 49521, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///I/101/O", "atom2_id": "///I/116/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5093, "atom1_serNum": 49439, "atom2_serNum": 49452, "donAcc_type": "standard", "distance": 2.704, "atom1_id": "///I/103/O", "atom2_id": "///I/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5094, "atom1_serNum": 49455, "atom2_serNum": 49479, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///I/105/O", "atom2_id": "///I/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5095, "atom1_serNum": 49526, "atom2_serNum": 49547, "donAcc_type": "standard", "distance": 3.273, "atom1_id": "///I/117/O", "atom2_id": "///I/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5096, "atom1_serNum": 49561, "atom2_serNum": 49585, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///I/121/O", "atom2_id": "///I/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5097, "atom1_serNum": 49568, "atom2_serNum": 49592, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///I/122/O", "atom2_id": "///I/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5098, "atom1_serNum": 49568, "atom2_serNum": 49598, "donAcc_type": "acceptable", "distance": 3.212, "atom1_id": "///I/122/O", "atom2_id": "///I/126/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5099, "atom1_serNum": 49576, "atom2_serNum": 49602, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///I/123/O", "atom2_id": "///I/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5100, "atom1_serNum": 49583, "atom2_serNum": 49610, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///I/124/O", "atom2_id": "///I/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5101, "atom1_serNum": 49588, "atom2_serNum": 49615, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///I/125/O", "atom2_id": "///I/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5102, "atom1_serNum": 49595, "atom2_serNum": 49623, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///I/126/O", "atom2_id": "///I/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5103, "atom1_serNum": 49595, "atom2_serNum": 50010, "donAcc_type": "acceptable", "distance": 3.632, "atom1_id": "///I/126/O", "atom2_id": "///I/177/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5104, "atom1_serNum": 49605, "atom2_serNum": 49631, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///I/127/O", "atom2_id": "///I/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5105, "atom1_serNum": 49609, "atom2_serNum": 49723, "donAcc_type": "standard", "distance": 2.525, "atom1_id": "///I/127/OD2", "atom2_id": "///I/142/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5106, "atom1_serNum": 49613, "atom2_serNum": 49640, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///I/128/O", "atom2_id": "///I/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5107, "atom1_serNum": 49618, "atom2_serNum": 49648, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///I/129/O", "atom2_id": "///I/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5108, "atom1_serNum": 49677, "atom2_serNum": 49887, "donAcc_type": "standard", "distance": 3.130, "atom1_id": "///I/136/O", "atom2_id": "///I/162/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5109, "atom1_serNum": 49690, "atom2_serNum": 49857, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///I/138/O", "atom2_id": "///I/159/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5110, "atom1_serNum": 49694, "atom2_serNum": 49887, "donAcc_type": "standard", "distance": 3.676, "atom1_id": "///I/138/OE1", "atom2_id": "///I/162/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5111, "atom1_serNum": 49704, "atom2_serNum": 49842, "donAcc_type": "standard", "distance": 2.385, "atom1_id": "///I/140/N", "atom2_id": "///I/157/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5112, "atom1_serNum": 49711, "atom2_serNum": 49842, "donAcc_type": "standard", "distance": 3.399, "atom1_id": "///I/141/N", "atom2_id": "///I/157/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5113, "atom1_serNum": 49714, "atom2_serNum": 49839, "donAcc_type": "standard", "distance": 2.695, "atom1_id": "///I/141/O", "atom2_id": "///I/157/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5114, "atom1_serNum": 49718, "atom2_serNum": 65837, "donAcc_type": "standard", "distance": 3.244, "atom1_id": "///I/142/O", "atom2_id": "///X/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5115, "atom1_serNum": 49724, "atom2_serNum": 49826, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///I/143/N", "atom2_id": "///I/155/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5116, "atom1_serNum": 49727, "atom2_serNum": 49823, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///I/143/O", "atom2_id": "///I/155/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5117, "atom1_serNum": 49733, "atom2_serNum": 70044, "donAcc_type": "standard", "distance": 3.942, "atom1_id": "///I/143/NH1", "atom2_id": "///c/8/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5118, "atom1_serNum": 49735, "atom2_serNum": 65824, "donAcc_type": "standard", "distance": 3.235, "atom1_id": "///I/144/N", "atom2_id": "///X/52/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5119, "atom1_serNum": 49738, "atom2_serNum": 65821, "donAcc_type": "standard", "distance": 3.267, "atom1_id": "///I/144/O", "atom2_id": "///X/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5120, "atom1_serNum": 49743, "atom2_serNum": 49810, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///I/145/N", "atom2_id": "///I/153/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5121, "atom1_serNum": 49746, "atom2_serNum": 49807, "donAcc_type": "standard", "distance": 2.591, "atom1_id": "///I/145/O", "atom2_id": "///I/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5122, "atom1_serNum": 49750, "atom2_serNum": 65799, "donAcc_type": "standard", "distance": 3.490, "atom1_id": "///I/145/NE", "atom2_id": "///X/49/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5123, "atom1_serNum": 49754, "atom2_serNum": 65804, "donAcc_type": "standard", "distance": 3.650, "atom1_id": "///I/146/N", "atom2_id": "///X/50/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5124, "atom1_serNum": 49757, "atom2_serNum": 65799, "donAcc_type": "questionable", "distance": 2.654, "atom1_id": "///I/146/O", "atom2_id": "///X/49/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5125, "atom1_serNum": 49761, "atom2_serNum": 49793, "donAcc_type": "standard", "distance": 2.535, "atom1_id": "///I/147/N", "atom2_id": "///I/151/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5126, "atom1_serNum": 49764, "atom2_serNum": 49786, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///I/147/O", "atom2_id": "///I/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5127, "atom1_serNum": 49770, "atom2_serNum": 65800, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///I/148/N", "atom2_id": "///X/49/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5128, "atom1_serNum": 49815, "atom2_serNum": 50060, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///I/154/N", "atom2_id": "///I/184/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5129, "atom1_serNum": 49818, "atom2_serNum": 50072, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///I/154/O", "atom2_id": "///I/186/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5130, "atom1_serNum": 49835, "atom2_serNum": 50091, "donAcc_type": "standard", "distance": 3.334, "atom1_id": "///I/156/O", "atom2_id": "///I/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5131, "atom1_serNum": 49849, "atom2_serNum": 50094, "donAcc_type": "standard", "distance": 3.422, "atom1_id": "///I/158/N", "atom2_id": "///I/188/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5132, "atom1_serNum": 49882, "atom2_serNum": 49911, "donAcc_type": "questionable", "distance": 2.858, "atom1_id": "///I/162/O", "atom2_id": "///I/165/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5133, "atom1_serNum": 49891, "atom2_serNum": 49927, "donAcc_type": "questionable", "distance": 2.822, "atom1_id": "///I/163/O", "atom2_id": "///I/167/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5134, "atom1_serNum": 49895, "atom2_serNum": 49903, "donAcc_type": "questionable", "distance": 3.166, "atom1_id": "///I/163/OE1", "atom2_id": "///I/164/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5135, "atom1_serNum": 49897, "atom2_serNum": 49903, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///I/164/N", "atom2_id": "///I/164/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5136, "atom1_serNum": 49905, "atom2_serNum": 49911, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///I/165/N", "atom2_id": "///I/165/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5137, "atom1_serNum": 49905, "atom2_serNum": 49927, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///I/165/N", "atom2_id": "///I/167/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5138, "atom1_serNum": 49913, "atom2_serNum": 49927, "donAcc_type": "standard", "distance": 3.284, "atom1_id": "///I/166/N", "atom2_id": "///I/167/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5139, "atom1_serNum": 49916, "atom2_serNum": 49939, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///I/166/O", "atom2_id": "///I/169/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5140, "atom1_serNum": 49920, "atom2_serNum": 49927, "donAcc_type": "standard", "distance": 2.575, "atom1_id": "///I/167/N", "atom2_id": "///I/167/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5141, "atom1_serNum": 49942, "atom2_serNum": 49971, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///I/169/O", "atom2_id": "///I/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5142, "atom1_serNum": 49951, "atom2_serNum": 49982, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///I/170/O", "atom2_id": "///I/174/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5143, "atom1_serNum": 49951, "atom2_serNum": 49987, "donAcc_type": "acceptable", "distance": 2.955, "atom1_id": "///I/170/O", "atom2_id": "///I/174/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5144, "atom1_serNum": 49958, "atom2_serNum": 49988, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///I/171/O", "atom2_id": "///I/175/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5145, "atom1_serNum": 49967, "atom2_serNum": 49992, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///I/172/O", "atom2_id": "///I/176/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5146, "atom1_serNum": 49974, "atom2_serNum": 49999, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///I/173/O", "atom2_id": "///I/177/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5147, "atom1_serNum": 49985, "atom2_serNum": 50011, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///I/174/O", "atom2_id": "///I/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5148, "atom1_serNum": 49987, "atom2_serNum": 50068, "donAcc_type": "acceptable", "distance": 3.003, "atom1_id": "///I/174/OG", "atom2_id": "///I/185/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5149, "atom1_serNum": 49991, "atom2_serNum": 50020, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///I/175/O", "atom2_id": "///I/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5150, "atom1_serNum": 49995, "atom2_serNum": 50029, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///I/176/O", "atom2_id": "///I/180/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5151, "atom1_serNum": 50002, "atom2_serNum": 50037, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///I/177/O", "atom2_id": "///I/181/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5152, "atom1_serNum": 50002, "atom2_serNum": 50042, "donAcc_type": "acceptable", "distance": 2.329, "atom1_id": "///I/177/O", "atom2_id": "///I/181/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5153, "atom1_serNum": 50014, "atom2_serNum": 50044, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///I/178/O", "atom2_id": "///I/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5154, "atom1_serNum": 50019, "atom2_serNum": 50063, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///I/178/NZ", "atom2_id": "///I/184/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5155, "atom1_serNum": 50042, "atom2_serNum": 50048, "donAcc_type": "acceptable", "distance": 3.577, "atom1_id": "///I/181/OG1", "atom2_id": "///I/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5156, "atom1_serNum": 50145, "atom2_serNum": 70114, "donAcc_type": "standard", "distance": 3.394, "atom1_id": "///I/193/OE1", "atom2_id": "///c/16/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5157, "atom1_serNum": 50173, "atom2_serNum": 50192, "donAcc_type": "acceptable", "distance": 2.647, "atom1_id": "///J/4/OG", "atom2_id": "///J/6/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5158, "atom1_serNum": 50188, "atom2_serNum": 50221, "donAcc_type": "acceptable", "distance": 3.038, "atom1_id": "///J/6/O", "atom2_id": "///J/9/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5159, "atom1_serNum": 50191, "atom2_serNum": 50215, "donAcc_type": "standard", "distance": 3.321, "atom1_id": "///J/6/OD1", "atom2_id": "///J/9/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5160, "atom1_serNum": 50191, "atom2_serNum": 50221, "donAcc_type": "acceptable", "distance": 2.762, "atom1_id": "///J/6/OD1", "atom2_id": "///J/9/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5161, "atom1_serNum": 50196, "atom2_serNum": 50225, "donAcc_type": "standard", "distance": 3.312, "atom1_id": "///J/7/O", "atom2_id": "///J/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5162, "atom1_serNum": 50243, "atom2_serNum": 50275, "donAcc_type": "standard", "distance": 2.649, "atom1_id": "///J/11/NH1", "atom2_id": "///J/15/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5163, "atom1_serNum": 50245, "atom2_serNum": 50279, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///J/12/N", "atom2_id": "///J/16/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5164, "atom1_serNum": 50264, "atom2_serNum": 55083, "donAcc_type": "acceptable", "distance": 2.835, "atom1_id": "///J/13/NZ", "atom2_id": "///M/110/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5165, "atom1_serNum": 50264, "atom2_serNum": 55288, "donAcc_type": "acceptable", "distance": 2.704, "atom1_id": "///J/13/NZ", "atom2_id": "///M/137/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5166, "atom1_serNum": 50270, "atom2_serNum": 50276, "donAcc_type": "acceptable", "distance": 3.456, "atom1_id": "///J/14/OG1", "atom2_id": "///J/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5167, "atom1_serNum": 50334, "atom2_serNum": 50341, "donAcc_type": "acceptable", "distance": 3.160, "atom1_id": "///J/22/ND1", "atom2_id": "///J/23/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5168, "atom1_serNum": 50356, "atom2_serNum": 50396, "donAcc_type": "standard", "distance": 3.263, "atom1_id": "///J/25/N", "atom2_id": "///J/28/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5169, "atom1_serNum": 50419, "atom2_serNum": 50537, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///J/31/NH2", "atom2_id": "///J/47/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5170, "atom1_serNum": 50448, "atom2_serNum": 50916, "donAcc_type": "questionable", "distance": 2.884, "atom1_id": "///J/36/O", "atom2_id": "///J/94/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5171, "atom1_serNum": 50450, "atom2_serNum": 50929, "donAcc_type": "acceptable", "distance": 2.602, "atom1_id": "///J/36/OG1", "atom2_id": "///J/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5172, "atom1_serNum": 50452, "atom2_serNum": 50628, "donAcc_type": "standard", "distance": 2.679, "atom1_id": "///J/37/N", "atom2_id": "///J/58/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5173, "atom1_serNum": 50455, "atom2_serNum": 50644, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///J/37/O", "atom2_id": "///J/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5174, "atom1_serNum": 50491, "atom2_serNum": 50636, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///J/42/N", "atom2_id": "///J/59/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5175, "atom1_serNum": 50494, "atom2_serNum": 50625, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///J/42/O", "atom2_id": "///J/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5176, "atom1_serNum": 50494, "atom2_serNum": 50633, "donAcc_type": "standard", "distance": 3.477, "atom1_id": "///J/42/O", "atom2_id": "///J/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5177, "atom1_serNum": 50510, "atom2_serNum": 50612, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///J/44/N", "atom2_id": "///J/56/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5178, "atom1_serNum": 50513, "atom2_serNum": 50609, "donAcc_type": "standard", "distance": 2.555, "atom1_id": "///J/44/O", "atom2_id": "///J/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5179, "atom1_serNum": 50525, "atom2_serNum": 50587, "donAcc_type": "acceptable", "distance": 3.410, "atom1_id": "///J/45/OG1", "atom2_id": "///J/53/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5180, "atom1_serNum": 50527, "atom2_serNum": 50591, "donAcc_type": "standard", "distance": 3.487, "atom1_id": "///J/46/N", "atom2_id": "///J/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5181, "atom1_serNum": 50530, "atom2_serNum": 50588, "donAcc_type": "standard", "distance": 3.378, "atom1_id": "///J/46/O", "atom2_id": "///J/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5182, "atom1_serNum": 50545, "atom2_serNum": 50574, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///J/48/N", "atom2_id": "///J/52/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5183, "atom1_serNum": 50548, "atom2_serNum": 50567, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///J/48/O", "atom2_id": "///J/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5184, "atom1_serNum": 50596, "atom2_serNum": 51630, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///J/54/NZ", "atom2_id": "///J/181/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5185, "atom1_serNum": 50618, "atom2_serNum": 51622, "donAcc_type": "standard", "distance": 2.397, "atom1_id": "///J/56/NH1", "atom2_id": "///J/180/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5186, "atom1_serNum": 50655, "atom2_serNum": 50786, "donAcc_type": "standard", "distance": 2.642, "atom1_id": "///J/61/O", "atom2_id": "///J/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5187, "atom1_serNum": 50659, "atom2_serNum": 50660, "donAcc_type": "standard", "distance": 2.487, "atom1_id": "///J/61/OD2", "atom2_id": "///J/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5188, "atom1_serNum": 50667, "atom2_serNum": 50771, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///J/63/N", "atom2_id": "///J/76/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5189, "atom1_serNum": 50670, "atom2_serNum": 50768, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///J/63/O", "atom2_id": "///J/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5190, "atom1_serNum": 50671, "atom2_serNum": 51656, "donAcc_type": "standard", "distance": 3.507, "atom1_id": "///J/64/N", "atom2_id": "///J/185/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5191, "atom1_serNum": 50674, "atom2_serNum": 51666, "donAcc_type": "standard", "distance": 3.391, "atom1_id": "///J/64/O", "atom2_id": "///J/187/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5192, "atom1_serNum": 50682, "atom2_serNum": 50751, "donAcc_type": "questionable", "distance": 3.351, "atom1_id": "///J/65/O", "atom2_id": "///J/74/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5193, "atom1_serNum": 50690, "atom2_serNum": 51669, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///J/66/N", "atom2_id": "///J/187/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5194, "atom1_serNum": 50693, "atom2_serNum": 51682, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///J/66/O", "atom2_id": "///J/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5195, "atom1_serNum": 50699, "atom2_serNum": 50729, "donAcc_type": "standard", "distance": 3.432, "atom1_id": "///J/67/O", "atom2_id": "///J/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5196, "atom1_serNum": 50699, "atom2_serNum": 50735, "donAcc_type": "standard", "distance": 3.561, "atom1_id": "///J/67/O", "atom2_id": "///J/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5197, "atom1_serNum": 50719, "atom2_serNum": 50727, "donAcc_type": "acceptable", "distance": 2.466, "atom1_id": "///J/69/OG", "atom2_id": "///J/70/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5198, "atom1_serNum": 50719, "atom2_serNum": 51705, "donAcc_type": "acceptable", "distance": 2.796, "atom1_id": "///J/69/OG", "atom2_id": "///J/191/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5199, "atom1_serNum": 50728, "atom2_serNum": 54343, "donAcc_type": "standard", "distance": 2.629, "atom1_id": "///J/70/OE2", "atom2_id": "///M/21/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5200, "atom1_serNum": 50778, "atom2_serNum": 50998, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///J/77/O", "atom2_id": "///J/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5201, "atom1_serNum": 50794, "atom2_serNum": 50985, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///J/79/N", "atom2_id": "///J/103/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5202, "atom1_serNum": 50805, "atom2_serNum": 50982, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///J/80/O", "atom2_id": "///J/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5203, "atom1_serNum": 50817, "atom2_serNum": 50970, "donAcc_type": "standard", "distance": 3.574, "atom1_id": "///J/82/N", "atom2_id": "///J/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5204, "atom1_serNum": 50827, "atom2_serNum": 50967, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///J/83/O", "atom2_id": "///J/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5205, "atom1_serNum": 50835, "atom2_serNum": 54224, "donAcc_type": "acceptable", "distance": 3.070, "atom1_id": "///J/83/OH", "atom2_id": "///M/8/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5206, "atom1_serNum": 50842, "atom2_serNum": 50844, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///J/84/OD1", "atom2_id": "///J/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5207, "atom1_serNum": 50842, "atom2_serNum": 50849, "donAcc_type": "standard", "distance": 3.177, "atom1_id": "///J/84/OD1", "atom2_id": "///J/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5208, "atom1_serNum": 50861, "atom2_serNum": 50863, "donAcc_type": "standard", "distance": 2.483, "atom1_id": "///J/87/OD1", "atom2_id": "///J/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5209, "atom1_serNum": 50861, "atom2_serNum": 50871, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///J/87/OD1", "atom2_id": "///J/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5210, "atom1_serNum": 50866, "atom2_serNum": 50888, "donAcc_type": "standard", "distance": 3.969, "atom1_id": "///J/88/O", "atom2_id": "///J/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5211, "atom1_serNum": 50866, "atom2_serNum": 51828, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///J/88/O", "atom2_id": "///J/205/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5212, "atom1_serNum": 50869, "atom2_serNum": 54230, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///J/88/OD1", "atom2_id": "///M/8/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5213, "atom1_serNum": 50874, "atom2_serNum": 50888, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///J/89/O", "atom2_id": "///J/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5214, "atom1_serNum": 50874, "atom2_serNum": 50895, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///J/89/O", "atom2_id": "///J/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5215, "atom1_serNum": 50874, "atom2_serNum": 50906, "donAcc_type": "standard", "distance": 3.198, "atom1_id": "///J/89/O", "atom2_id": "///J/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5216, "atom1_serNum": 50883, "atom2_serNum": 50922, "donAcc_type": "standard", "distance": 3.561, "atom1_id": "///J/90/O", "atom2_id": "///J/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5217, "atom1_serNum": 50909, "atom2_serNum": 50911, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///J/93/O", "atom2_id": "///J/93/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5218, "atom1_serNum": 50909, "atom2_serNum": 50922, "donAcc_type": "standard", "distance": 3.011, "atom1_id": "///J/93/O", "atom2_id": "///J/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5219, "atom1_serNum": 50953, "atom2_serNum": 51585, "donAcc_type": "standard", "distance": 2.449, "atom1_id": "///J/99/N", "atom2_id": "///J/175/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5220, "atom1_serNum": 50956, "atom2_serNum": 50960, "donAcc_type": "standard", "distance": 2.415, "atom1_id": "///J/99/O", "atom2_id": "///J/99/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5221, "atom1_serNum": 50959, "atom2_serNum": 51767, "donAcc_type": "acceptable", "distance": 3.743, "atom1_id": "///J/99/OD1", "atom2_id": "///J/198/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5222, "atom1_serNum": 50961, "atom2_serNum": 51585, "donAcc_type": "standard", "distance": 3.718, "atom1_id": "///J/100/N", "atom2_id": "///J/175/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5223, "atom1_serNum": 50964, "atom2_serNum": 51582, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///J/100/O", "atom2_id": "///J/175/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5224, "atom1_serNum": 50975, "atom2_serNum": 51574, "donAcc_type": "standard", "distance": 3.093, "atom1_id": "///J/102/N", "atom2_id": "///J/173/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5225, "atom1_serNum": 50978, "atom2_serNum": 51571, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///J/102/O", "atom2_id": "///J/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5226, "atom1_serNum": 50990, "atom2_serNum": 51558, "donAcc_type": "standard", "distance": 3.198, "atom1_id": "///J/104/N", "atom2_id": "///J/171/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5227, "atom1_serNum": 50993, "atom2_serNum": 51555, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///J/104/O", "atom2_id": "///J/171/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5228, "atom1_serNum": 51005, "atom2_serNum": 51012, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///J/105/OD2", "atom2_id": "///J/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5229, "atom1_serNum": 51005, "atom2_serNum": 51017, "donAcc_type": "acceptable", "distance": 2.547, "atom1_id": "///J/105/OD2", "atom2_id": "///J/107/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5230, "atom1_serNum": 51009, "atom2_serNum": 51038, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///J/106/O", "atom2_id": "///J/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5231, "atom1_serNum": 51015, "atom2_serNum": 51049, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///J/107/O", "atom2_id": "///J/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5232, "atom1_serNum": 51022, "atom2_serNum": 51058, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///J/108/O", "atom2_id": "///J/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5233, "atom1_serNum": 51029, "atom2_serNum": 51072, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///J/109/O", "atom2_id": "///J/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5234, "atom1_serNum": 51041, "atom2_serNum": 51084, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///J/110/O", "atom2_id": "///J/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5235, "atom1_serNum": 51045, "atom2_serNum": 51092, "donAcc_type": "standard", "distance": 3.299, "atom1_id": "///J/110/NE", "atom2_id": "///J/114/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5236, "atom1_serNum": 51048, "atom2_serNum": 51144, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///J/110/NH2", "atom2_id": "///J/121/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5237, "atom1_serNum": 51052, "atom2_serNum": 51093, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///J/111/O", "atom2_id": "///J/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5238, "atom1_serNum": 51052, "atom2_serNum": 51098, "donAcc_type": "acceptable", "distance": 2.934, "atom1_id": "///J/111/O", "atom2_id": "///J/115/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5239, "atom1_serNum": 51061, "atom2_serNum": 51099, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///J/112/O", "atom2_id": "///J/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5240, "atom1_serNum": 51075, "atom2_serNum": 51109, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///J/113/O", "atom2_id": "///J/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5241, "atom1_serNum": 51083, "atom2_serNum": 51439, "donAcc_type": "acceptable", "distance": 3.105, "atom1_id": "///J/113/OH", "atom2_id": "///J/156/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5242, "atom1_serNum": 51087, "atom2_serNum": 51121, "donAcc_type": "standard", "distance": 3.256, "atom1_id": "///J/114/O", "atom2_id": "///J/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5243, "atom1_serNum": 51092, "atom2_serNum": 51163, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///J/114/OE2", "atom2_id": "///J/123/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5244, "atom1_serNum": 51152, "atom2_serNum": 51532, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///J/122/O", "atom2_id": "///J/167/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5245, "atom1_serNum": 51167, "atom2_serNum": 51186, "donAcc_type": "standard", "distance": 3.444, "atom1_id": "///J/124/O", "atom2_id": "///J/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5246, "atom1_serNum": 51225, "atom2_serNum": 51258, "donAcc_type": "standard", "distance": 3.449, "atom1_id": "///J/132/O", "atom2_id": "///J/136/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5247, "atom1_serNum": 51234, "atom2_serNum": 51266, "donAcc_type": "standard", "distance": 3.737, "atom1_id": "///J/133/O", "atom2_id": "///J/137/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5248, "atom1_serNum": 51243, "atom2_serNum": 51274, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///J/134/O", "atom2_id": "///J/138/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5249, "atom1_serNum": 51248, "atom2_serNum": 51280, "donAcc_type": "questionable", "distance": 3.081, "atom1_id": "///J/134/OE2", "atom2_id": "///J/138/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5250, "atom1_serNum": 51256, "atom2_serNum": 51290, "donAcc_type": "standard", "distance": 2.415, "atom1_id": "///J/135/OE1", "atom2_id": "///J/139/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5251, "atom1_serNum": 51269, "atom2_serNum": 51307, "donAcc_type": "standard", "distance": 2.431, "atom1_id": "///J/137/O", "atom2_id": "///J/141/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5252, "atom1_serNum": 51269, "atom2_serNum": 51310, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///J/137/O", "atom2_id": "///J/141/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5253, "atom1_serNum": 51314, "atom2_serNum": 51343, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///J/142/O", "atom2_id": "///J/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5254, "atom1_serNum": 51329, "atom2_serNum": 51361, "donAcc_type": "standard", "distance": 3.708, "atom1_id": "///J/144/O", "atom2_id": "///J/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5255, "atom1_serNum": 51338, "atom2_serNum": 51370, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///J/145/O", "atom2_id": "///J/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5256, "atom1_serNum": 51346, "atom2_serNum": 51382, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///J/146/O", "atom2_id": "///J/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5257, "atom1_serNum": 51355, "atom2_serNum": 51388, "donAcc_type": "questionable", "distance": 2.831, "atom1_id": "///J/147/O", "atom2_id": "///J/150/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5258, "atom1_serNum": 51355, "atom2_serNum": 51390, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///J/147/O", "atom2_id": "///J/151/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5259, "atom1_serNum": 51364, "atom2_serNum": 51399, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///J/148/O", "atom2_id": "///J/152/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5260, "atom1_serNum": 51373, "atom2_serNum": 51410, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///J/149/O", "atom2_id": "///J/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5261, "atom1_serNum": 51385, "atom2_serNum": 51419, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///J/150/O", "atom2_id": "///J/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5262, "atom1_serNum": 51388, "atom2_serNum": 51427, "donAcc_type": "standard", "distance": 2.459, "atom1_id": "///J/150/OD1", "atom2_id": "///J/154/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5263, "atom1_serNum": 51439, "atom2_serNum": 51450, "donAcc_type": "standard", "distance": 3.133, "atom1_id": "///J/156/O", "atom2_id": "///J/158/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5264, "atom1_serNum": 51461, "atom2_serNum": 51486, "donAcc_type": "standard", "distance": 3.194, "atom1_id": "///J/159/O", "atom2_id": "///J/163/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5265, "atom1_serNum": 51467, "atom2_serNum": 51495, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///J/160/O", "atom2_id": "///J/164/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5266, "atom1_serNum": 51473, "atom2_serNum": 51504, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///J/161/O", "atom2_id": "///J/165/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5267, "atom1_serNum": 51481, "atom2_serNum": 51513, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///J/162/O", "atom2_id": "///J/166/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5268, "atom1_serNum": 51489, "atom2_serNum": 51524, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///J/163/O", "atom2_id": "///J/167/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5269, "atom1_serNum": 51498, "atom2_serNum": 51533, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///J/164/O", "atom2_id": "///J/168/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5270, "atom1_serNum": 51503, "atom2_serNum": 51540, "donAcc_type": "questionable", "distance": 3.151, "atom1_id": "///J/164/OE2", "atom2_id": "///J/168/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5271, "atom1_serNum": 51507, "atom2_serNum": 51542, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///J/165/O", "atom2_id": "///J/169/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5272, "atom1_serNum": 51512, "atom2_serNum": 51563, "donAcc_type": "questionable", "distance": 3.412, "atom1_id": "///J/165/NE2", "atom2_id": "///J/172/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5273, "atom1_serNum": 51566, "atom2_serNum": 51689, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///J/172/O", "atom2_id": "///J/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5274, "atom1_serNum": 51576, "atom2_serNum": 51673, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///J/174/N", "atom2_id": "///J/188/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5275, "atom1_serNum": 51579, "atom2_serNum": 51590, "donAcc_type": "standard", "distance": 3.201, "atom1_id": "///J/174/O", "atom2_id": "///J/176/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5276, "atom1_serNum": 51579, "atom2_serNum": 51670, "donAcc_type": "standard", "distance": 3.089, "atom1_id": "///J/174/O", "atom2_id": "///J/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5277, "atom1_serNum": 51590, "atom2_serNum": 51661, "donAcc_type": "standard", "distance": 3.765, "atom1_id": "///J/176/N", "atom2_id": "///J/186/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5278, "atom1_serNum": 51598, "atom2_serNum": 51612, "donAcc_type": "standard", "distance": 3.277, "atom1_id": "///J/177/O", "atom2_id": "///J/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5279, "atom1_serNum": 51604, "atom2_serNum": 51632, "donAcc_type": "standard", "distance": 3.613, "atom1_id": "///J/178/O", "atom2_id": "///J/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5280, "atom1_serNum": 51615, "atom2_serNum": 51638, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///J/179/O", "atom2_id": "///J/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5281, "atom1_serNum": 51681, "atom2_serNum": 51727, "donAcc_type": "acceptable", "distance": 3.069, "atom1_id": "///J/188/OH", "atom2_id": "///J/194/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5282, "atom1_serNum": 51700, "atom2_serNum": 51719, "donAcc_type": "standard", "distance": 3.915, "atom1_id": "///J/191/O", "atom2_id": "///J/194/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5283, "atom1_serNum": 51700, "atom2_serNum": 54325, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///J/191/O", "atom2_id": "///M/19/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5284, "atom1_serNum": 51709, "atom2_serNum": 51736, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///J/192/O", "atom2_id": "///J/196/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5285, "atom1_serNum": 51713, "atom2_serNum": 51745, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///J/193/O", "atom2_id": "///J/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5286, "atom1_serNum": 51722, "atom2_serNum": 51756, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///J/194/O", "atom2_id": "///J/198/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5287, "atom1_serNum": 51731, "atom2_serNum": 51768, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///J/195/O", "atom2_id": "///J/199/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5288, "atom1_serNum": 51739, "atom2_serNum": 51776, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///J/196/O", "atom2_id": "///J/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5289, "atom1_serNum": 51748, "atom2_serNum": 51787, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///J/197/O", "atom2_id": "///J/201/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5290, "atom1_serNum": 51759, "atom2_serNum": 51796, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///J/198/O", "atom2_id": "///J/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5291, "atom1_serNum": 51771, "atom2_serNum": 51804, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///J/199/O", "atom2_id": "///J/203/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5292, "atom1_serNum": 51779, "atom2_serNum": 51813, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///J/200/O", "atom2_id": "///J/204/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5293, "atom1_serNum": 51790, "atom2_serNum": 51818, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///J/201/O", "atom2_id": "///J/205/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5294, "atom1_serNum": 51799, "atom2_serNum": 51829, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///J/202/O", "atom2_id": "///J/206/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5295, "atom1_serNum": 51807, "atom2_serNum": 51838, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///J/203/O", "atom2_id": "///J/207/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5296, "atom1_serNum": 51853, "atom2_serNum": 51862, "donAcc_type": "standard", "distance": 2.970, "atom1_id": "///K/3/O", "atom2_id": "///K/5/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5297, "atom1_serNum": 51969, "atom2_serNum": 51988, "donAcc_type": "standard", "distance": 3.419, "atom1_id": "///K/17/O", "atom2_id": "///K/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5298, "atom1_serNum": 51980, "atom2_serNum": 52040, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///K/18/O", "atom2_id": "///K/24/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5299, "atom1_serNum": 51991, "atom2_serNum": 52040, "donAcc_type": "standard", "distance": 2.561, "atom1_id": "///K/19/O", "atom2_id": "///K/24/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5300, "atom1_serNum": 52014, "atom2_serNum": 52029, "donAcc_type": "acceptable", "distance": 3.444, "atom1_id": "///K/21/OE2", "atom2_id": "///K/23/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5301, "atom1_serNum": 52018, "atom2_serNum": 52049, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///K/22/O", "atom2_id": "///K/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5302, "atom1_serNum": 52027, "atom2_serNum": 52057, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///K/23/O", "atom2_id": "///K/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5303, "atom1_serNum": 52033, "atom2_serNum": 52066, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///K/24/O", "atom2_id": "///K/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5304, "atom1_serNum": 52039, "atom2_serNum": 52073, "donAcc_type": "standard", "distance": 3.586, "atom1_id": "///K/24/NH1", "atom2_id": "///K/28/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5305, "atom1_serNum": 52044, "atom2_serNum": 52075, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///K/25/O", "atom2_id": "///K/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5306, "atom1_serNum": 52044, "atom2_serNum": 52172, "donAcc_type": "standard", "distance": 3.714, "atom1_id": "///K/25/O", "atom2_id": "///K/40/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5307, "atom1_serNum": 52052, "atom2_serNum": 52083, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///K/26/O", "atom2_id": "///K/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5308, "atom1_serNum": 52060, "atom2_serNum": 52092, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///K/27/O", "atom2_id": "///K/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5309, "atom1_serNum": 52069, "atom2_serNum": 52100, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///K/28/O", "atom2_id": "///K/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5310, "atom1_serNum": 52074, "atom2_serNum": 52240, "donAcc_type": "standard", "distance": 3.709, "atom1_id": "///K/28/OE2", "atom2_id": "///K/47/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5311, "atom1_serNum": 52078, "atom2_serNum": 52108, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///K/29/O", "atom2_id": "///K/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5312, "atom1_serNum": 52086, "atom2_serNum": 52112, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///K/30/O", "atom2_id": "///K/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5313, "atom1_serNum": 52091, "atom2_serNum": 71930, "donAcc_type": "acceptable", "distance": 2.786, "atom1_id": "///K/30/NZ", "atom2_id": "///f/111/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5314, "atom1_serNum": 52095, "atom2_serNum": 52121, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///K/31/O", "atom2_id": "///K/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5315, "atom1_serNum": 52103, "atom2_serNum": 52133, "donAcc_type": "standard", "distance": 2.624, "atom1_id": "///K/32/O", "atom2_id": "///K/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5316, "atom1_serNum": 52103, "atom2_serNum": 52137, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///K/32/O", "atom2_id": "///K/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5317, "atom1_serNum": 52124, "atom2_serNum": 52772, "donAcc_type": "standard", "distance": 2.450, "atom1_id": "///K/35/O", "atom2_id": "///K/111/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5318, "atom1_serNum": 52136, "atom2_serNum": 52772, "donAcc_type": "standard", "distance": 3.278, "atom1_id": "///K/36/O", "atom2_id": "///K/111/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5319, "atom1_serNum": 52148, "atom2_serNum": 71847, "donAcc_type": "questionable", "distance": 3.134, "atom1_id": "///K/38/O", "atom2_id": "///f/102/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5320, "atom1_serNum": 52156, "atom2_serNum": 52162, "donAcc_type": "standard", "distance": 2.536, "atom1_id": "///K/39/N", "atom2_id": "///K/39/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5321, "atom1_serNum": 52167, "atom2_serNum": 52200, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///K/40/O", "atom2_id": "///K/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5322, "atom1_serNum": 52176, "atom2_serNum": 52214, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///K/41/O", "atom2_id": "///K/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5323, "atom1_serNum": 52187, "atom2_serNum": 52225, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///K/42/O", "atom2_id": "///K/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5324, "atom1_serNum": 52191, "atom2_serNum": 52755, "donAcc_type": "standard", "distance": 2.464, "atom1_id": "///K/42/OE1", "atom2_id": "///K/109/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5325, "atom1_serNum": 52192, "atom2_serNum": 52899, "donAcc_type": "standard", "distance": 3.769, "atom1_id": "///K/42/OE2", "atom2_id": "///K/127/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5326, "atom1_serNum": 52196, "atom2_serNum": 52232, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///K/43/O", "atom2_id": "///K/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5327, "atom1_serNum": 52203, "atom2_serNum": 52241, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///K/44/O", "atom2_id": "///K/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5328, "atom1_serNum": 52217, "atom2_serNum": 52252, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///K/45/O", "atom2_id": "///K/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5329, "atom1_serNum": 52228, "atom2_serNum": 52259, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///K/46/O", "atom2_id": "///K/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5330, "atom1_serNum": 52235, "atom2_serNum": 52267, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///K/47/O", "atom2_id": "///K/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5331, "atom1_serNum": 52244, "atom2_serNum": 52272, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///K/48/O", "atom2_id": "///K/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5332, "atom1_serNum": 52255, "atom2_serNum": 52281, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///K/49/O", "atom2_id": "///K/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5333, "atom1_serNum": 52262, "atom2_serNum": 52289, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///K/50/O", "atom2_id": "///K/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5334, "atom1_serNum": 52270, "atom2_serNum": 52300, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///K/51/O", "atom2_id": "///K/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5335, "atom1_serNum": 52275, "atom2_serNum": 52309, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///K/52/O", "atom2_id": "///K/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5336, "atom1_serNum": 52284, "atom2_serNum": 52314, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///K/53/O", "atom2_id": "///K/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5337, "atom1_serNum": 52292, "atom2_serNum": 52319, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///K/54/O", "atom2_id": "///K/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5338, "atom1_serNum": 52303, "atom2_serNum": 52330, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///K/55/O", "atom2_id": "///K/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5339, "atom1_serNum": 52312, "atom2_serNum": 52339, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///K/56/O", "atom2_id": "///K/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5340, "atom1_serNum": 52317, "atom2_serNum": 52347, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///K/57/O", "atom2_id": "///K/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5341, "atom1_serNum": 52322, "atom2_serNum": 52355, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///K/58/O", "atom2_id": "///K/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5342, "atom1_serNum": 52342, "atom2_serNum": 52362, "donAcc_type": "standard", "distance": 3.659, "atom1_id": "///K/60/O", "atom2_id": "///K/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5343, "atom1_serNum": 52360, "atom2_serNum": 66102, "donAcc_type": "acceptable", "distance": 2.722, "atom1_id": "///K/62/OG1", "atom2_id": "///X/87/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5344, "atom1_serNum": 52365, "atom2_serNum": 52431, "donAcc_type": "standard", "distance": 2.482, "atom1_id": "///K/63/O", "atom2_id": "///K/70/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5345, "atom1_serNum": 52370, "atom2_serNum": 52376, "donAcc_type": "standard", "distance": 2.532, "atom1_id": "///K/64/N", "atom2_id": "///K/64/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5346, "atom1_serNum": 52373, "atom2_serNum": 52396, "donAcc_type": "standard", "distance": 3.972, "atom1_id": "///K/64/O", "atom2_id": "///K/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5347, "atom1_serNum": 52385, "atom2_serNum": 52432, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///K/65/OE1", "atom2_id": "///K/70/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5348, "atom1_serNum": 52399, "atom2_serNum": 52422, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///K/67/O", "atom2_id": "///K/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5349, "atom1_serNum": 52399, "atom2_serNum": 52433, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///K/67/O", "atom2_id": "///K/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5350, "atom1_serNum": 52407, "atom2_serNum": 52441, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///K/68/O", "atom2_id": "///K/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5351, "atom1_serNum": 52414, "atom2_serNum": 52452, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///K/69/O", "atom2_id": "///K/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5352, "atom1_serNum": 52425, "atom2_serNum": 52461, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///K/70/O", "atom2_id": "///K/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5353, "atom1_serNum": 52436, "atom2_serNum": 52465, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///K/71/O", "atom2_id": "///K/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5354, "atom1_serNum": 52444, "atom2_serNum": 52473, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///K/72/O", "atom2_id": "///K/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5355, "atom1_serNum": 52455, "atom2_serNum": 52478, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///K/73/O", "atom2_id": "///K/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5356, "atom1_serNum": 52464, "atom2_serNum": 52486, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///K/74/O", "atom2_id": "///K/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5357, "atom1_serNum": 52468, "atom2_serNum": 52494, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///K/75/O", "atom2_id": "///K/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5358, "atom1_serNum": 52476, "atom2_serNum": 52505, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///K/76/O", "atom2_id": "///K/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5359, "atom1_serNum": 52481, "atom2_serNum": 52516, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///K/77/O", "atom2_id": "///K/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5360, "atom1_serNum": 52489, "atom2_serNum": 52524, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///K/78/O", "atom2_id": "///K/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5361, "atom1_serNum": 52497, "atom2_serNum": 52531, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///K/79/O", "atom2_id": "///K/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5362, "atom1_serNum": 52508, "atom2_serNum": 52542, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///K/80/O", "atom2_id": "///K/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5363, "atom1_serNum": 52519, "atom2_serNum": 52550, "donAcc_type": "standard", "distance": 3.201, "atom1_id": "///K/81/O", "atom2_id": "///K/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5364, "atom1_serNum": 52519, "atom2_serNum": 52554, "donAcc_type": "standard", "distance": 3.441, "atom1_id": "///K/81/O", "atom2_id": "///K/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5365, "atom1_serNum": 52534, "atom2_serNum": 53099, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///K/83/O", "atom2_id": "///K/151/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5366, "atom1_serNum": 52541, "atom2_serNum": 53097, "donAcc_type": "questionable", "distance": 2.985, "atom1_id": "///K/83/NH2", "atom2_id": "///K/150/NH1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5367, "atom1_serNum": 52545, "atom2_serNum": 53084, "donAcc_type": "questionable", "distance": 3.094, "atom1_id": "///K/84/O", "atom2_id": "///K/149/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5368, "atom1_serNum": 52619, "atom2_serNum": 52644, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///K/94/O", "atom2_id": "///K/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5369, "atom1_serNum": 52630, "atom2_serNum": 52632, "donAcc_type": "standard", "distance": 2.699, "atom1_id": "///K/95/OD1", "atom2_id": "///K/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5370, "atom1_serNum": 52675, "atom2_serNum": 52706, "donAcc_type": "standard", "distance": 3.477, "atom1_id": "///K/101/O", "atom2_id": "///K/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5371, "atom1_serNum": 52684, "atom2_serNum": 52717, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///K/102/O", "atom2_id": "///K/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5372, "atom1_serNum": 52689, "atom2_serNum": 52696, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///K/103/N", "atom2_id": "///K/103/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5373, "atom1_serNum": 52692, "atom2_serNum": 52725, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///K/103/O", "atom2_id": "///K/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5374, "atom1_serNum": 52720, "atom2_serNum": 52745, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///K/106/O", "atom2_id": "///K/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5375, "atom1_serNum": 52728, "atom2_serNum": 52787, "donAcc_type": "questionable", "distance": 3.162, "atom1_id": "///K/107/O", "atom2_id": "///K/113/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5376, "atom1_serNum": 52737, "atom2_serNum": 53081, "donAcc_type": "standard", "distance": 3.394, "atom1_id": "///K/108/O", "atom2_id": "///K/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5377, "atom1_serNum": 52743, "atom2_serNum": 53128, "donAcc_type": "standard", "distance": 2.589, "atom1_id": "///K/108/NH1", "atom2_id": "///K/154/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5378, "atom1_serNum": 52744, "atom2_serNum": 53084, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///K/108/NH2", "atom2_id": "///K/149/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5379, "atom1_serNum": 52744, "atom2_serNum": 53091, "donAcc_type": "standard", "distance": 2.491, "atom1_id": "///K/108/NH2", "atom2_id": "///K/150/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5380, "atom1_serNum": 52744, "atom2_serNum": 53128, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///K/108/NH2", "atom2_id": "///K/154/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5381, "atom1_serNum": 52748, "atom2_serNum": 52780, "donAcc_type": "standard", "distance": 3.023, "atom1_id": "///K/109/O", "atom2_id": "///K/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5382, "atom1_serNum": 52756, "atom2_serNum": 53052, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///K/110/N", "atom2_id": "///K/145/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5383, "atom1_serNum": 52756, "atom2_serNum": 53065, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///K/110/N", "atom2_id": "///K/147/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5384, "atom1_serNum": 52759, "atom2_serNum": 52789, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///K/110/O", "atom2_id": "///K/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5385, "atom1_serNum": 52764, "atom2_serNum": 53052, "donAcc_type": "standard", "distance": 3.423, "atom1_id": "///K/111/N", "atom2_id": "///K/145/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5386, "atom1_serNum": 52767, "atom2_serNum": 52796, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///K/111/O", "atom2_id": "///K/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5387, "atom1_serNum": 52771, "atom2_serNum": 52898, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///K/111/OE1", "atom2_id": "///K/127/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5388, "atom1_serNum": 52776, "atom2_serNum": 52807, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///K/112/O", "atom2_id": "///K/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5389, "atom1_serNum": 52783, "atom2_serNum": 52816, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///K/113/O", "atom2_id": "///K/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5390, "atom1_serNum": 52841, "atom2_serNum": 52880, "donAcc_type": "acceptable", "distance": 3.030, "atom1_id": "///K/121/N", "atom2_id": "///K/125/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5391, "atom1_serNum": 52853, "atom2_serNum": 52884, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///K/122/O", "atom2_id": "///K/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5392, "atom1_serNum": 52859, "atom2_serNum": 52889, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///K/123/O", "atom2_id": "///K/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5393, "atom1_serNum": 52867, "atom2_serNum": 52900, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///K/124/O", "atom2_id": "///K/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5394, "atom1_serNum": 52877, "atom2_serNum": 52907, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///K/125/O", "atom2_id": "///K/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5395, "atom1_serNum": 52887, "atom2_serNum": 52915, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///K/126/O", "atom2_id": "///K/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5396, "atom1_serNum": 52892, "atom2_serNum": 52923, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///K/127/O", "atom2_id": "///K/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5397, "atom1_serNum": 52903, "atom2_serNum": 52934, "donAcc_type": "standard", "distance": 3.284, "atom1_id": "///K/128/O", "atom2_id": "///K/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5398, "atom1_serNum": 52910, "atom2_serNum": 52954, "donAcc_type": "standard", "distance": 3.421, "atom1_id": "///K/129/O", "atom2_id": "///K/134/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5399, "atom1_serNum": 52918, "atom2_serNum": 52943, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///K/130/O", "atom2_id": "///K/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5400, "atom1_serNum": 52926, "atom2_serNum": 52930, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///K/131/O", "atom2_id": "///K/131/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5401, "atom1_serNum": 52926, "atom2_serNum": 53039, "donAcc_type": "questionable", "distance": 2.788, "atom1_id": "///K/131/O", "atom2_id": "///K/143/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5402, "atom1_serNum": 52942, "atom2_serNum": 52960, "donAcc_type": "acceptable", "distance": 3.117, "atom1_id": "///K/132/NE2", "atom2_id": "///K/134/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5403, "atom1_serNum": 52957, "atom2_serNum": 53176, "donAcc_type": "standard", "distance": 3.585, "atom1_id": "///K/134/O", "atom2_id": "///K/160/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5404, "atom1_serNum": 52967, "atom2_serNum": 53029, "donAcc_type": "questionable", "distance": 3.363, "atom1_id": "///K/135/O", "atom2_id": "///K/142/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5405, "atom1_serNum": 52972, "atom2_serNum": 53160, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///K/136/N", "atom2_id": "///K/158/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5406, "atom1_serNum": 52983, "atom2_serNum": 53013, "donAcc_type": "standard", "distance": 2.578, "atom1_id": "///K/137/N", "atom2_id": "///K/140/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5407, "atom1_serNum": 52990, "atom2_serNum": 53142, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///K/138/N", "atom2_id": "///K/156/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5408, "atom1_serNum": 53000, "atom2_serNum": 53110, "donAcc_type": "standard", "distance": 2.620, "atom1_id": "///K/138/NH2", "atom2_id": "///K/152/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5409, "atom1_serNum": 53018, "atom2_serNum": 53022, "donAcc_type": "standard", "distance": 3.633, "atom1_id": "///K/140/NE2", "atom2_id": "///K/141/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5410, "atom1_serNum": 53018, "atom2_serNum": 68054, "donAcc_type": "standard", "distance": 2.607, "atom1_id": "///K/140/NE2", "atom2_id": "///Z/64/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5411, "atom1_serNum": 53044, "atom2_serNum": 53062, "donAcc_type": "standard", "distance": 3.354, "atom1_id": "///K/144/O", "atom2_id": "///K/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5412, "atom1_serNum": 53059, "atom2_serNum": 53073, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///K/146/O", "atom2_id": "///K/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5413, "atom1_serNum": 53065, "atom2_serNum": 53081, "donAcc_type": "standard", "distance": 3.045, "atom1_id": "///K/147/O", "atom2_id": "///K/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5414, "atom1_serNum": 53107, "atom2_serNum": 53113, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///K/152/N", "atom2_id": "///K/152/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5415, "atom1_serNum": 53113, "atom2_serNum": 53115, "donAcc_type": "standard", "distance": 2.588, "atom1_id": "///K/152/OD1", "atom2_id": "///K/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5416, "atom1_serNum": 53118, "atom2_serNum": 53120, "donAcc_type": "acceptable", "distance": 2.624, "atom1_id": "///K/153/O", "atom2_id": "///K/153/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5417, "atom1_serNum": 53181, "atom2_serNum": 53190, "donAcc_type": "acceptable", "distance": 3.356, "atom1_id": "///K/160/OG", "atom2_id": "///K/162/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5418, "atom1_serNum": 53185, "atom2_serNum": 53233, "donAcc_type": "questionable", "distance": 2.855, "atom1_id": "///K/161/O", "atom2_id": "///K/167/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5419, "atom1_serNum": 53199, "atom2_serNum": 67786, "donAcc_type": "standard", "distance": 3.568, "atom1_id": "///K/162/NH1", "atom2_id": "///Z/31/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5420, "atom1_serNum": 53252, "atom2_serNum": 53297, "donAcc_type": "standard", "distance": 2.358, "atom1_id": "///K/170/O", "atom2_id": "///K/175/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5421, "atom1_serNum": 53259, "atom2_serNum": 53294, "donAcc_type": "standard", "distance": 2.381, "atom1_id": "///K/171/O", "atom2_id": "///K/175/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5422, "atom1_serNum": 53259, "atom2_serNum": 53297, "donAcc_type": "standard", "distance": 3.082, "atom1_id": "///K/171/O", "atom2_id": "///K/175/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5423, "atom1_serNum": 53274, "atom2_serNum": 53307, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///K/173/O", "atom2_id": "///K/177/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5424, "atom1_serNum": 53281, "atom2_serNum": 53315, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///K/174/O", "atom2_id": "///K/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5425, "atom1_serNum": 53290, "atom2_serNum": 53320, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///K/175/O", "atom2_id": "///K/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5426, "atom1_serNum": 53301, "atom2_serNum": 53329, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///K/176/O", "atom2_id": "///K/180/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5427, "atom1_serNum": 53310, "atom2_serNum": 53338, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///K/177/O", "atom2_id": "///K/181/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5428, "atom1_serNum": 53318, "atom2_serNum": 53342, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///K/178/O", "atom2_id": "///K/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5429, "atom1_serNum": 53323, "atom2_serNum": 53351, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///K/179/O", "atom2_id": "///K/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5430, "atom1_serNum": 53332, "atom2_serNum": 53355, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///K/180/O", "atom2_id": "///K/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5431, "atom1_serNum": 53341, "atom2_serNum": 53359, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///K/181/O", "atom2_id": "///K/185/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5432, "atom1_serNum": 53345, "atom2_serNum": 53364, "donAcc_type": "standard", "distance": 3.073, "atom1_id": "///K/182/O", "atom2_id": "///K/186/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5433, "atom1_serNum": 53354, "atom2_serNum": 53364, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///K/183/O", "atom2_id": "///K/186/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5434, "atom1_serNum": 53396, "atom2_serNum": 53426, "donAcc_type": "standard", "distance": 3.514, "atom1_id": "///L/4/O", "atom2_id": "///L/8/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5435, "atom1_serNum": 53403, "atom2_serNum": 53437, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///L/5/O", "atom2_id": "///L/9/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5436, "atom1_serNum": 53412, "atom2_serNum": 53445, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///L/6/O", "atom2_id": "///L/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5437, "atom1_serNum": 53421, "atom2_serNum": 53450, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///L/7/O", "atom2_id": "///L/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5438, "atom1_serNum": 53429, "atom2_serNum": 53458, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///L/8/O", "atom2_id": "///L/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5439, "atom1_serNum": 53433, "atom2_serNum": 53469, "donAcc_type": "acceptable", "distance": 2.860, "atom1_id": "///L/8/NE", "atom2_id": "///L/12/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5440, "atom1_serNum": 53440, "atom2_serNum": 53470, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///L/9/O", "atom2_id": "///L/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5441, "atom1_serNum": 53448, "atom2_serNum": 53479, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///L/10/O", "atom2_id": "///L/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5442, "atom1_serNum": 53453, "atom2_serNum": 53487, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///L/11/O", "atom2_id": "///L/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5443, "atom1_serNum": 53461, "atom2_serNum": 53495, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///L/12/O", "atom2_id": "///L/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5444, "atom1_serNum": 53473, "atom2_serNum": 53506, "donAcc_type": "standard", "distance": 3.101, "atom1_id": "///L/13/O", "atom2_id": "///L/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5445, "atom1_serNum": 53527, "atom2_serNum": 53962, "donAcc_type": "standard", "distance": 3.452, "atom1_id": "///L/19/O", "atom2_id": "///L/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5446, "atom1_serNum": 53535, "atom2_serNum": 53939, "donAcc_type": "standard", "distance": 3.221, "atom1_id": "///L/21/N", "atom2_id": "///L/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5447, "atom1_serNum": 53538, "atom2_serNum": 53936, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///L/21/O", "atom2_id": "///L/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5448, "atom1_serNum": 53546, "atom2_serNum": 53631, "donAcc_type": "standard", "distance": 3.629, "atom1_id": "///L/22/O", "atom2_id": "///L/32/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5449, "atom1_serNum": 53550, "atom2_serNum": 53916, "donAcc_type": "standard", "distance": 3.693, "atom1_id": "///L/23/N", "atom2_id": "///L/67/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5450, "atom1_serNum": 53553, "atom2_serNum": 53913, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///L/23/O", "atom2_id": "///L/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5451, "atom1_serNum": 53558, "atom2_serNum": 53573, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///L/24/O", "atom2_id": "///L/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5452, "atom1_serNum": 53564, "atom2_serNum": 53895, "donAcc_type": "standard", "distance": 2.483, "atom1_id": "///L/25/N", "atom2_id": "///L/65/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5453, "atom1_serNum": 53573, "atom2_serNum": 53579, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///L/26/N", "atom2_id": "///L/26/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5454, "atom1_serNum": 53579, "atom2_serNum": 53707, "donAcc_type": "standard", "distance": 3.671, "atom1_id": "///L/26/OD1", "atom2_id": "///L/42/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5455, "atom1_serNum": 53609, "atom2_serNum": 53689, "donAcc_type": "questionable", "distance": 2.765, "atom1_id": "///L/30/O", "atom2_id": "///L/40/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5456, "atom1_serNum": 53609, "atom2_serNum": 53700, "donAcc_type": "standard", "distance": 2.786, "atom1_id": "///L/30/O", "atom2_id": "///L/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5457, "atom1_serNum": 53622, "atom2_serNum": 53689, "donAcc_type": "standard", "distance": 3.977, "atom1_id": "///L/32/N", "atom2_id": "///L/40/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5458, "atom1_serNum": 53628, "atom2_serNum": 53648, "donAcc_type": "acceptable", "distance": 3.201, "atom1_id": "///L/32/ND1", "atom2_id": "///L/35/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5459, "atom1_serNum": 53651, "atom2_serNum": 53672, "donAcc_type": "questionable", "distance": 3.263, "atom1_id": "///L/35/O", "atom2_id": "///L/38/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5460, "atom1_serNum": 53696, "atom2_serNum": 53726, "donAcc_type": "standard", "distance": 3.098, "atom1_id": "///L/41/O", "atom2_id": "///L/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5461, "atom1_serNum": 53703, "atom2_serNum": 53733, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///L/42/O", "atom2_id": "///L/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5462, "atom1_serNum": 53711, "atom2_serNum": 53741, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///L/43/O", "atom2_id": "///L/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5463, "atom1_serNum": 53719, "atom2_serNum": 53750, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///L/44/O", "atom2_id": "///L/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5464, "atom1_serNum": 53729, "atom2_serNum": 53755, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///L/45/O", "atom2_id": "///L/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5465, "atom1_serNum": 53736, "atom2_serNum": 53763, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///L/46/O", "atom2_id": "///L/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5466, "atom1_serNum": 53744, "atom2_serNum": 53772, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///L/47/O", "atom2_id": "///L/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5467, "atom1_serNum": 53744, "atom2_serNum": 53777, "donAcc_type": "acceptable", "distance": 2.829, "atom1_id": "///L/47/O", "atom2_id": "///L/51/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5468, "atom1_serNum": 53749, "atom2_serNum": 53770, "donAcc_type": "standard", "distance": 3.324, "atom1_id": "///L/47/NZ", "atom2_id": "///L/50/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5469, "atom1_serNum": 53753, "atom2_serNum": 53778, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///L/48/O", "atom2_id": "///L/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5470, "atom1_serNum": 53758, "atom2_serNum": 53786, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///L/49/O", "atom2_id": "///L/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5471, "atom1_serNum": 53766, "atom2_serNum": 53795, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///L/50/O", "atom2_id": "///L/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5472, "atom1_serNum": 53775, "atom2_serNum": 53800, "donAcc_type": "acceptable", "distance": 2.401, "atom1_id": "///L/51/O", "atom2_id": "///L/54/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5473, "atom1_serNum": 53775, "atom2_serNum": 53801, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///L/51/O", "atom2_id": "///L/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5474, "atom1_serNum": 53781, "atom2_serNum": 53812, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///L/52/O", "atom2_id": "///L/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5475, "atom1_serNum": 53781, "atom2_serNum": 53816, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///L/52/O", "atom2_id": "///L/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5476, "atom1_serNum": 53789, "atom2_serNum": 53812, "donAcc_type": "standard", "distance": 2.635, "atom1_id": "///L/53/O", "atom2_id": "///L/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5477, "atom1_serNum": 53819, "atom2_serNum": 53975, "donAcc_type": "acceptable", "distance": 2.302, "atom1_id": "///L/57/O", "atom2_id": "///L/72/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5478, "atom1_serNum": 53835, "atom2_serNum": 53953, "donAcc_type": "standard", "distance": 3.078, "atom1_id": "///L/59/N", "atom2_id": "///L/70/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5479, "atom1_serNum": 53838, "atom2_serNum": 53950, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///L/59/O", "atom2_id": "///L/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5480, "atom1_serNum": 53851, "atom2_serNum": 53944, "donAcc_type": "standard", "distance": 2.345, "atom1_id": "///L/60/OE1", "atom2_id": "///L/69/NE1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5481, "atom1_serNum": 53853, "atom2_serNum": 53927, "donAcc_type": "standard", "distance": 2.688, "atom1_id": "///L/61/N", "atom2_id": "///L/68/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5482, "atom1_serNum": 53856, "atom2_serNum": 53924, "donAcc_type": "standard", "distance": 2.399, "atom1_id": "///L/61/O", "atom2_id": "///L/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5483, "atom1_serNum": 53873, "atom2_serNum": 53906, "donAcc_type": "standard", "distance": 3.803, "atom1_id": "///L/63/N", "atom2_id": "///L/66/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5484, "atom1_serNum": 53973, "atom2_serNum": 53998, "donAcc_type": "standard", "distance": 2.485, "atom1_id": "///L/72/O", "atom2_id": "///L/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5485, "atom1_serNum": 53975, "atom2_serNum": 53994, "donAcc_type": "acceptable", "distance": 2.978, "atom1_id": "///L/72/OG1", "atom2_id": "///L/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5486, "atom1_serNum": 53980, "atom2_serNum": 54006, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///L/73/O", "atom2_id": "///L/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5487, "atom1_serNum": 53988, "atom2_serNum": 54015, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///L/74/O", "atom2_id": "///L/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5488, "atom1_serNum": 53997, "atom2_serNum": 54027, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///L/75/O", "atom2_id": "///L/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5489, "atom1_serNum": 54001, "atom2_serNum": 54035, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///L/76/O", "atom2_id": "///L/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5490, "atom1_serNum": 54001, "atom2_serNum": 54042, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///L/76/O", "atom2_id": "///L/80/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5491, "atom1_serNum": 54009, "atom2_serNum": 54046, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///L/77/O", "atom2_id": "///L/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5492, "atom1_serNum": 54018, "atom2_serNum": 54054, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///L/78/O", "atom2_id": "///L/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5493, "atom1_serNum": 54030, "atom2_serNum": 54066, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///L/79/O", "atom2_id": "///L/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5494, "atom1_serNum": 54038, "atom2_serNum": 54074, "donAcc_type": "standard", "distance": 3.058, "atom1_id": "///L/80/O", "atom2_id": "///L/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5495, "atom1_serNum": 54038, "atom2_serNum": 54084, "donAcc_type": "standard", "distance": 3.278, "atom1_id": "///L/80/O", "atom2_id": "///L/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5496, "atom1_serNum": 54044, "atom2_serNum": 54102, "donAcc_type": "standard", "distance": 3.043, "atom1_id": "///L/80/NH1", "atom2_id": "///L/87/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5497, "atom1_serNum": 54049, "atom2_serNum": 54080, "donAcc_type": "acceptable", "distance": 3.005, "atom1_id": "///L/81/O", "atom2_id": "///L/84/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5498, "atom1_serNum": 54095, "atom2_serNum": 54115, "donAcc_type": "standard", "distance": 3.485, "atom1_id": "///L/86/O", "atom2_id": "///L/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5499, "atom1_serNum": 54133, "atom2_serNum": 54157, "donAcc_type": "standard", "distance": 3.905, "atom1_id": "///L/91/O", "atom2_id": "///L/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5500, "atom1_serNum": 54204, "atom2_serNum": 54252, "donAcc_type": "standard", "distance": 2.617, "atom1_id": "///M/5/NE2", "atom2_id": "///M/11/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5501, "atom1_serNum": 54248, "atom2_serNum": 54316, "donAcc_type": "acceptable", "distance": 3.195, "atom1_id": "///M/10/OH", "atom2_id": "///M/18/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5502, "atom1_serNum": 54248, "atom2_serNum": 54317, "donAcc_type": "acceptable", "distance": 2.869, "atom1_id": "///M/10/OH", "atom2_id": "///M/18/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5503, "atom1_serNum": 54270, "atom2_serNum": 54290, "donAcc_type": "standard", "distance": 3.377, "atom1_id": "///M/13/O", "atom2_id": "///M/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5504, "atom1_serNum": 54270, "atom2_serNum": 54293, "donAcc_type": "questionable", "distance": 3.353, "atom1_id": "///M/13/O", "atom2_id": "///M/16/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5505, "atom1_serNum": 54274, "atom2_serNum": 54455, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///M/13/OE1", "atom2_id": "///M/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5506, "atom1_serNum": 54275, "atom2_serNum": 54458, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///M/13/NE2", "atom2_id": "///M/36/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5507, "atom1_serNum": 54329, "atom2_serNum": 54344, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///M/20/O", "atom2_id": "///M/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5508, "atom1_serNum": 54351, "atom2_serNum": 54410, "donAcc_type": "questionable", "distance": 2.969, "atom1_id": "///M/22/NE", "atom2_id": "///M/30/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5509, "atom1_serNum": 54382, "atom2_serNum": 54389, "donAcc_type": "standard", "distance": 2.603, "atom1_id": "///M/27/N", "atom2_id": "///M/27/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5510, "atom1_serNum": 54451, "atom2_serNum": 54575, "donAcc_type": "standard", "distance": 3.467, "atom1_id": "///M/35/NE", "atom2_id": "///M/50/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5511, "atom1_serNum": 54453, "atom2_serNum": 54608, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///M/35/NH1", "atom2_id": "///M/55/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5512, "atom1_serNum": 54454, "atom2_serNum": 54608, "donAcc_type": "standard", "distance": 2.614, "atom1_id": "///M/35/NH2", "atom2_id": "///M/55/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5513, "atom1_serNum": 54479, "atom2_serNum": 54667, "donAcc_type": "standard", "distance": 3.223, "atom1_id": "///M/38/N", "atom2_id": "///M/62/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5514, "atom1_serNum": 54494, "atom2_serNum": 54496, "donAcc_type": "standard", "distance": 2.718, "atom1_id": "///M/39/OD1", "atom2_id": "///M/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5515, "atom1_serNum": 54494, "atom2_serNum": 54504, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///M/39/OD1", "atom2_id": "///M/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5516, "atom1_serNum": 54507, "atom2_serNum": 54520, "donAcc_type": "standard", "distance": 3.170, "atom1_id": "///M/41/O", "atom2_id": "///M/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5517, "atom1_serNum": 54519, "atom2_serNum": 54531, "donAcc_type": "standard", "distance": 3.287, "atom1_id": "///M/43/O", "atom2_id": "///M/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5518, "atom1_serNum": 54550, "atom2_serNum": 54572, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///M/47/O", "atom2_id": "///M/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5519, "atom1_serNum": 54550, "atom2_serNum": 54577, "donAcc_type": "standard", "distance": 3.571, "atom1_id": "///M/47/O", "atom2_id": "///M/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5520, "atom1_serNum": 54557, "atom2_serNum": 54577, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///M/48/O", "atom2_id": "///M/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5521, "atom1_serNum": 54557, "atom2_serNum": 54585, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///M/48/O", "atom2_id": "///M/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5522, "atom1_serNum": 54616, "atom2_serNum": 54680, "donAcc_type": "acceptable", "distance": 3.217, "atom1_id": "///M/55/OH", "atom2_id": "///M/63/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5523, "atom1_serNum": 54620, "atom2_serNum": 54840, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///M/56/O", "atom2_id": "///M/84/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5524, "atom1_serNum": 54628, "atom2_serNum": 54651, "donAcc_type": "standard", "distance": 3.072, "atom1_id": "///M/57/O", "atom2_id": "///M/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5525, "atom1_serNum": 54628, "atom2_serNum": 54678, "donAcc_type": "questionable", "distance": 2.769, "atom1_id": "///M/57/O", "atom2_id": "///M/63/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5526, "atom1_serNum": 54631, "atom2_serNum": 54642, "donAcc_type": "standard", "distance": 3.095, "atom1_id": "///M/57/OD1", "atom2_id": "///M/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5527, "atom1_serNum": 54636, "atom2_serNum": 54686, "donAcc_type": "standard", "distance": 3.334, "atom1_id": "///M/58/O", "atom2_id": "///M/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5528, "atom1_serNum": 54636, "atom2_serNum": 54692, "donAcc_type": "questionable", "distance": 3.017, "atom1_id": "///M/58/O", "atom2_id": "///M/65/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5529, "atom1_serNum": 54645, "atom2_serNum": 55326, "donAcc_type": "standard", "distance": 3.356, "atom1_id": "///M/59/O", "atom2_id": "///M/141/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5530, "atom1_serNum": 54686, "atom2_serNum": 54692, "donAcc_type": "standard", "distance": 2.526, "atom1_id": "///M/65/N", "atom2_id": "///M/65/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5531, "atom1_serNum": 54689, "atom2_serNum": 55252, "donAcc_type": "standard", "distance": 3.807, "atom1_id": "///M/65/O", "atom2_id": "///M/132/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5532, "atom1_serNum": 54715, "atom2_serNum": 55230, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///M/69/N", "atom2_id": "///M/130/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5533, "atom1_serNum": 54718, "atom2_serNum": 54724, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///M/69/O", "atom2_id": "///M/69/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5534, "atom1_serNum": 54730, "atom2_serNum": 55234, "donAcc_type": "standard", "distance": 3.317, "atom1_id": "///M/71/N", "atom2_id": "///M/130/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5535, "atom1_serNum": 54733, "atom2_serNum": 55227, "donAcc_type": "standard", "distance": 3.009, "atom1_id": "///M/71/O", "atom2_id": "///M/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5536, "atom1_serNum": 54749, "atom2_serNum": 55219, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///M/73/N", "atom2_id": "///M/128/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5537, "atom1_serNum": 54752, "atom2_serNum": 55216, "donAcc_type": "standard", "distance": 3.103, "atom1_id": "///M/73/O", "atom2_id": "///M/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5538, "atom1_serNum": 54760, "atom2_serNum": 54892, "donAcc_type": "standard", "distance": 3.560, "atom1_id": "///M/74/O", "atom2_id": "///M/90/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5539, "atom1_serNum": 54763, "atom2_serNum": 55205, "donAcc_type": "standard", "distance": 3.319, "atom1_id": "///M/75/N", "atom2_id": "///M/126/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5540, "atom1_serNum": 54766, "atom2_serNum": 55202, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///M/75/O", "atom2_id": "///M/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5541, "atom1_serNum": 54767, "atom2_serNum": 54875, "donAcc_type": "standard", "distance": 3.149, "atom1_id": "///M/76/N", "atom2_id": "///M/89/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5542, "atom1_serNum": 54770, "atom2_serNum": 54872, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///M/76/O", "atom2_id": "///M/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5543, "atom1_serNum": 54774, "atom2_serNum": 55189, "donAcc_type": "standard", "distance": 3.667, "atom1_id": "///M/77/N", "atom2_id": "///M/124/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5544, "atom1_serNum": 54777, "atom2_serNum": 55182, "donAcc_type": "standard", "distance": 3.686, "atom1_id": "///M/77/O", "atom2_id": "///M/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5545, "atom1_serNum": 54781, "atom2_serNum": 54860, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///M/78/N", "atom2_id": "///M/87/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5546, "atom1_serNum": 54788, "atom2_serNum": 54860, "donAcc_type": "standard", "distance": 3.479, "atom1_id": "///M/79/N", "atom2_id": "///M/87/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5547, "atom1_serNum": 54791, "atom2_serNum": 54857, "donAcc_type": "standard", "distance": 3.216, "atom1_id": "///M/79/O", "atom2_id": "///M/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5548, "atom1_serNum": 54834, "atom2_serNum": 55101, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///M/84/O", "atom2_id": "///M/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5549, "atom1_serNum": 54847, "atom2_serNum": 55087, "donAcc_type": "acceptable", "distance": 2.268, "atom1_id": "///M/85/OG1", "atom2_id": "///M/111/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5550, "atom1_serNum": 54849, "atom2_serNum": 55087, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///M/86/N", "atom2_id": "///M/111/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5551, "atom1_serNum": 54852, "atom2_serNum": 55084, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///M/86/O", "atom2_id": "///M/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5552, "atom1_serNum": 54864, "atom2_serNum": 55073, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///M/88/N", "atom2_id": "///M/109/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5553, "atom1_serNum": 54867, "atom2_serNum": 55070, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///M/88/O", "atom2_id": "///M/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5554, "atom1_serNum": 54881, "atom2_serNum": 54900, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///M/89/NH1", "atom2_id": "///M/91/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5555, "atom1_serNum": 54881, "atom2_serNum": 54901, "donAcc_type": "standard", "distance": 3.149, "atom1_id": "///M/89/NH1", "atom2_id": "///M/91/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5556, "atom1_serNum": 54886, "atom2_serNum": 55053, "donAcc_type": "standard", "distance": 3.190, "atom1_id": "///M/90/O", "atom2_id": "///M/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5557, "atom1_serNum": 54902, "atom2_serNum": 55035, "donAcc_type": "standard", "distance": 3.118, "atom1_id": "///M/92/N", "atom2_id": "///M/105/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5558, "atom1_serNum": 54905, "atom2_serNum": 55032, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///M/92/O", "atom2_id": "///M/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5559, "atom1_serNum": 54922, "atom2_serNum": 55017, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///M/94/N", "atom2_id": "///M/103/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5560, "atom1_serNum": 54925, "atom2_serNum": 55014, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///M/94/O", "atom2_id": "///M/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5561, "atom1_serNum": 54943, "atom2_serNum": 54991, "donAcc_type": "acceptable", "distance": 3.546, "atom1_id": "///M/95/OH", "atom2_id": "///M/100/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5562, "atom1_serNum": 54944, "atom2_serNum": 54995, "donAcc_type": "standard", "distance": 3.498, "atom1_id": "///M/96/N", "atom2_id": "///M/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5563, "atom1_serNum": 54955, "atom2_serNum": 54991, "donAcc_type": "standard", "distance": 3.070, "atom1_id": "///M/97/O", "atom2_id": "///M/100/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5564, "atom1_serNum": 54975, "atom2_serNum": 54992, "donAcc_type": "standard", "distance": 2.493, "atom1_id": "///M/99/O", "atom2_id": "///M/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5565, "atom1_serNum": 55003, "atom2_serNum": 66492, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///M/102/N", "atom2_id": "///Y/7/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5566, "atom1_serNum": 55021, "atom2_serNum": 55039, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///M/103/OE1", "atom2_id": "///M/105/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5567, "atom1_serNum": 55021, "atom2_serNum": 55042, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///M/103/OE1", "atom2_id": "///M/105/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5568, "atom1_serNum": 55026, "atom2_serNum": 66530, "donAcc_type": "standard", "distance": 2.341, "atom1_id": "///M/104/O", "atom2_id": "///Y/11/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5569, "atom1_serNum": 55091, "atom2_serNum": 55311, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///M/112/N", "atom2_id": "///M/140/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5570, "atom1_serNum": 55094, "atom2_serNum": 55327, "donAcc_type": "standard", "distance": 3.055, "atom1_id": "///M/112/O", "atom2_id": "///M/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5571, "atom1_serNum": 55097, "atom2_serNum": 55325, "donAcc_type": "acceptable", "distance": 3.337, "atom1_id": "///M/112/ND1", "atom2_id": "///M/141/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5572, "atom1_serNum": 55112, "atom2_serNum": 55128, "donAcc_type": "standard", "distance": 3.395, "atom1_id": "///M/114/O", "atom2_id": "///M/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5573, "atom1_serNum": 55153, "atom2_serNum": 55373, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///M/119/O", "atom2_id": "///M/147/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5574, "atom1_serNum": 55165, "atom2_serNum": 55193, "donAcc_type": "standard", "distance": 2.564, "atom1_id": "///M/121/N", "atom2_id": "///M/124/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5575, "atom1_serNum": 55168, "atom2_serNum": 55186, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///M/121/O", "atom2_id": "///M/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5576, "atom1_serNum": 55189, "atom2_serNum": 55202, "donAcc_type": "standard", "distance": 3.151, "atom1_id": "///M/124/O", "atom2_id": "///M/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5577, "atom1_serNum": 55192, "atom2_serNum": 55374, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///M/124/OD1", "atom2_id": "///M/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5578, "atom1_serNum": 55194, "atom2_serNum": 55361, "donAcc_type": "standard", "distance": 3.117, "atom1_id": "///M/125/N", "atom2_id": "///M/146/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5579, "atom1_serNum": 55197, "atom2_serNum": 55358, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///M/125/O", "atom2_id": "///M/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5580, "atom1_serNum": 55209, "atom2_serNum": 55345, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///M/127/N", "atom2_id": "///M/144/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5581, "atom1_serNum": 55212, "atom2_serNum": 55334, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///M/127/O", "atom2_id": "///M/143/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5582, "atom1_serNum": 55212, "atom2_serNum": 55342, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///M/127/O", "atom2_id": "///M/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5583, "atom1_serNum": 55223, "atom2_serNum": 55322, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///M/129/N", "atom2_id": "///M/141/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5584, "atom1_serNum": 55226, "atom2_serNum": 55319, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///M/129/O", "atom2_id": "///M/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5585, "atom1_serNum": 55236, "atom2_serNum": 55300, "donAcc_type": "standard", "distance": 3.428, "atom1_id": "///M/131/N", "atom2_id": "///M/139/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5586, "atom1_serNum": 55245, "atom2_serNum": 55260, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///M/132/O", "atom2_id": "///M/134/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5587, "atom1_serNum": 55260, "atom2_serNum": 55293, "donAcc_type": "standard", "distance": 3.108, "atom1_id": "///M/134/N", "atom2_id": "///M/138/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5588, "atom1_serNum": 55268, "atom2_serNum": 55293, "donAcc_type": "standard", "distance": 3.273, "atom1_id": "///M/135/N", "atom2_id": "///M/138/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5589, "atom1_serNum": 55271, "atom2_serNum": 55306, "donAcc_type": "standard", "distance": 2.535, "atom1_id": "///M/135/O", "atom2_id": "///M/139/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5590, "atom1_serNum": 55277, "atom2_serNum": 55307, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///M/136/O", "atom2_id": "///M/139/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5591, "atom1_serNum": 55377, "atom2_serNum": 55384, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///M/148/O", "atom2_id": "///M/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5592, "atom1_serNum": 55387, "atom2_serNum": 55393, "donAcc_type": "acceptable", "distance": 2.528, "atom1_id": "///M/150/O", "atom2_id": "///M/151/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5593, "atom1_serNum": 55391, "atom2_serNum": 55393, "donAcc_type": "acceptable", "distance": 2.588, "atom1_id": "///M/151/O", "atom2_id": "///M/151/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5594, "atom1_serNum": 55417, "atom2_serNum": 55441, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///N/14/O", "atom2_id": "///N/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5595, "atom1_serNum": 55424, "atom2_serNum": 55449, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///N/15/O", "atom2_id": "///N/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5596, "atom1_serNum": 55432, "atom2_serNum": 55458, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///N/16/O", "atom2_id": "///N/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5597, "atom1_serNum": 55439, "atom2_serNum": 55467, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///N/17/O", "atom2_id": "///N/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5598, "atom1_serNum": 55444, "atom2_serNum": 55474, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///N/18/O", "atom2_id": "///N/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5599, "atom1_serNum": 55452, "atom2_serNum": 55482, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///N/19/O", "atom2_id": "///N/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5600, "atom1_serNum": 55461, "atom2_serNum": 55491, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///N/20/O", "atom2_id": "///N/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5601, "atom1_serNum": 55461, "atom2_serNum": 55496, "donAcc_type": "acceptable", "distance": 2.812, "atom1_id": "///N/20/O", "atom2_id": "///N/24/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5602, "atom1_serNum": 55470, "atom2_serNum": 55496, "donAcc_type": "acceptable", "distance": 2.712, "atom1_id": "///N/21/O", "atom2_id": "///N/24/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5603, "atom1_serNum": 55470, "atom2_serNum": 55498, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///N/21/O", "atom2_id": "///N/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5604, "atom1_serNum": 55477, "atom2_serNum": 55503, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///N/22/O", "atom2_id": "///N/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5605, "atom1_serNum": 55485, "atom2_serNum": 55511, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///N/23/O", "atom2_id": "///N/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5606, "atom1_serNum": 55494, "atom2_serNum": 55519, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///N/24/O", "atom2_id": "///N/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5607, "atom1_serNum": 55501, "atom2_serNum": 55529, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///N/25/O", "atom2_id": "///N/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5608, "atom1_serNum": 55501, "atom2_serNum": 55537, "donAcc_type": "standard", "distance": 3.154, "atom1_id": "///N/25/O", "atom2_id": "///N/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5609, "atom1_serNum": 55540, "atom2_serNum": 56166, "donAcc_type": "questionable", "distance": 2.971, "atom1_id": "///N/30/O", "atom2_id": "///N/112/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5610, "atom1_serNum": 55549, "atom2_serNum": 56152, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///N/32/N", "atom2_id": "///N/110/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5611, "atom1_serNum": 55554, "atom2_serNum": 55595, "donAcc_type": "standard", "distance": 3.080, "atom1_id": "///N/33/N", "atom2_id": "///N/37/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5612, "atom1_serNum": 55557, "atom2_serNum": 55595, "donAcc_type": "questionable", "distance": 2.821, "atom1_id": "///N/33/O", "atom2_id": "///N/37/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5613, "atom1_serNum": 55564, "atom2_serNum": 55999, "donAcc_type": "standard", "distance": 3.256, "atom1_id": "///N/33/NH2", "atom2_id": "///N/89/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5614, "atom1_serNum": 55564, "atom2_serNum": 56006, "donAcc_type": "standard", "distance": 2.283, "atom1_id": "///N/33/NH2", "atom2_id": "///N/90/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5615, "atom1_serNum": 55568, "atom2_serNum": 55597, "donAcc_type": "standard", "distance": 3.040, "atom1_id": "///N/34/O", "atom2_id": "///N/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5616, "atom1_serNum": 55572, "atom2_serNum": 55602, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///N/35/O", "atom2_id": "///N/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5617, "atom1_serNum": 55580, "atom2_serNum": 55607, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///N/36/O", "atom2_id": "///N/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5618, "atom1_serNum": 55584, "atom2_serNum": 72292, "donAcc_type": "acceptable", "distance": 2.853, "atom1_id": "///N/36/NE", "atom2_id": "///g/105/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5619, "atom1_serNum": 55591, "atom2_serNum": 55616, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///N/37/O", "atom2_id": "///N/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5620, "atom1_serNum": 55600, "atom2_serNum": 55621, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///N/38/O", "atom2_id": "///N/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5621, "atom1_serNum": 55605, "atom2_serNum": 55629, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///N/39/O", "atom2_id": "///N/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5622, "atom1_serNum": 55610, "atom2_serNum": 55637, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///N/40/O", "atom2_id": "///N/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5623, "atom1_serNum": 55619, "atom2_serNum": 55646, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///N/41/O", "atom2_id": "///N/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5624, "atom1_serNum": 55619, "atom2_serNum": 55657, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///N/41/O", "atom2_id": "///N/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5625, "atom1_serNum": 55635, "atom2_serNum": 72304, "donAcc_type": "acceptable", "distance": 3.347, "atom1_id": "///N/43/OD1", "atom2_id": "///g/106/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5626, "atom1_serNum": 55649, "atom2_serNum": 55680, "donAcc_type": "standard", "distance": 3.740, "atom1_id": "///N/45/O", "atom2_id": "///N/48/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5627, "atom1_serNum": 55664, "atom2_serNum": 56171, "donAcc_type": "standard", "distance": 2.652, "atom1_id": "///N/46/OE1", "atom2_id": "///N/112/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5628, "atom1_serNum": 55674, "atom2_serNum": 55865, "donAcc_type": "questionable", "distance": 3.018, "atom1_id": "///N/48/O", "atom2_id": "///N/73/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5629, "atom1_serNum": 55684, "atom2_serNum": 56156, "donAcc_type": "standard", "distance": 3.529, "atom1_id": "///N/49/O", "atom2_id": "///N/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5630, "atom1_serNum": 55695, "atom2_serNum": 56145, "donAcc_type": "standard", "distance": 3.447, "atom1_id": "///N/51/N", "atom2_id": "///N/109/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5631, "atom1_serNum": 55702, "atom2_serNum": 55898, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///N/52/N", "atom2_id": "///N/77/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5632, "atom1_serNum": 55705, "atom2_serNum": 55912, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///N/52/O", "atom2_id": "///N/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5633, "atom1_serNum": 55715, "atom2_serNum": 55915, "donAcc_type": "standard", "distance": 2.675, "atom1_id": "///N/54/N", "atom2_id": "///N/79/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5634, "atom1_serNum": 55728, "atom2_serNum": 55926, "donAcc_type": "standard", "distance": 3.357, "atom1_id": "///N/55/ND2", "atom2_id": "///N/80/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5635, "atom1_serNum": 55732, "atom2_serNum": 55743, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///N/56/O", "atom2_id": "///N/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5636, "atom1_serNum": 55735, "atom2_serNum": 55741, "donAcc_type": "standard", "distance": 2.549, "atom1_id": "///N/57/N", "atom2_id": "///N/57/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5637, "atom1_serNum": 55762, "atom2_serNum": 55795, "donAcc_type": "standard", "distance": 3.701, "atom1_id": "///N/60/O", "atom2_id": "///N/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5638, "atom1_serNum": 55770, "atom2_serNum": 55803, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///N/61/O", "atom2_id": "///N/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5639, "atom1_serNum": 55782, "atom2_serNum": 55810, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///N/62/O", "atom2_id": "///N/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5640, "atom1_serNum": 55789, "atom2_serNum": 55819, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///N/63/O", "atom2_id": "///N/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5641, "atom1_serNum": 55798, "atom2_serNum": 55824, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///N/64/O", "atom2_id": "///N/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5642, "atom1_serNum": 55806, "atom2_serNum": 55832, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///N/65/O", "atom2_id": "///N/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5643, "atom1_serNum": 55813, "atom2_serNum": 55838, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///N/66/O", "atom2_id": "///N/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5644, "atom1_serNum": 55822, "atom2_serNum": 72349, "donAcc_type": "questionable", "distance": 3.282, "atom1_id": "///N/67/O", "atom2_id": "///g/112/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5645, "atom1_serNum": 55930, "atom2_serNum": 55961, "donAcc_type": "standard", "distance": 3.311, "atom1_id": "///N/81/O", "atom2_id": "///N/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5646, "atom1_serNum": 55934, "atom2_serNum": 55960, "donAcc_type": "standard", "distance": 3.386, "atom1_id": "///N/81/OD2", "atom2_id": "///N/84/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5647, "atom1_serNum": 55938, "atom2_serNum": 55969, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///N/82/O", "atom2_id": "///N/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5648, "atom1_serNum": 55938, "atom2_serNum": 56124, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///N/82/O", "atom2_id": "///N/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5649, "atom1_serNum": 55941, "atom2_serNum": 55943, "donAcc_type": "standard", "distance": 2.484, "atom1_id": "///N/82/OD1", "atom2_id": "///N/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5650, "atom1_serNum": 55946, "atom2_serNum": 55973, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///N/83/O", "atom2_id": "///N/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5651, "atom1_serNum": 55955, "atom2_serNum": 55982, "donAcc_type": "standard", "distance": 2.598, "atom1_id": "///N/84/O", "atom2_id": "///N/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5652, "atom1_serNum": 55964, "atom2_serNum": 55996, "donAcc_type": "standard", "distance": 3.134, "atom1_id": "///N/85/O", "atom2_id": "///N/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5653, "atom1_serNum": 55972, "atom2_serNum": 56003, "donAcc_type": "standard", "distance": 3.009, "atom1_id": "///N/86/O", "atom2_id": "///N/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5654, "atom1_serNum": 55972, "atom2_serNum": 56007, "donAcc_type": "standard", "distance": 2.999, "atom1_id": "///N/86/O", "atom2_id": "///N/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5655, "atom1_serNum": 56073, "atom2_serNum": 56095, "donAcc_type": "standard", "distance": 2.600, "atom1_id": "///N/99/O", "atom2_id": "///N/101/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5656, "atom1_serNum": 56179, "atom2_serNum": 56242, "donAcc_type": "standard", "distance": 2.382, "atom1_id": "///N/113/OD2", "atom2_id": "///N/121/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5657, "atom1_serNum": 56183, "atom2_serNum": 56196, "donAcc_type": "standard", "distance": 3.141, "atom1_id": "///N/114/O", "atom2_id": "///N/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5658, "atom1_serNum": 56195, "atom2_serNum": 56219, "donAcc_type": "acceptable", "distance": 3.147, "atom1_id": "///N/115/O", "atom2_id": "///N/118/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5659, "atom1_serNum": 56199, "atom2_serNum": 56214, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///N/116/O", "atom2_id": "///N/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5660, "atom1_serNum": 56232, "atom2_serNum": 56258, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///N/120/O", "atom2_id": "///N/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5661, "atom1_serNum": 56237, "atom2_serNum": 56266, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///N/121/O", "atom2_id": "///N/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5662, "atom1_serNum": 56246, "atom2_serNum": 56274, "donAcc_type": "questionable", "distance": 3.310, "atom1_id": "///N/122/O", "atom2_id": "///N/125/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5663, "atom1_serNum": 56246, "atom2_serNum": 56275, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///N/122/O", "atom2_id": "///N/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5664, "atom1_serNum": 56254, "atom2_serNum": 56284, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///N/123/O", "atom2_id": "///N/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5665, "atom1_serNum": 56261, "atom2_serNum": 56296, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///N/124/O", "atom2_id": "///N/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5666, "atom1_serNum": 56269, "atom2_serNum": 56307, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///N/125/O", "atom2_id": "///N/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5667, "atom1_serNum": 56278, "atom2_serNum": 56316, "donAcc_type": "standard", "distance": 3.360, "atom1_id": "///N/126/O", "atom2_id": "///N/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5668, "atom1_serNum": 56327, "atom2_serNum": 56371, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///O/3/N", "atom2_id": "///O/8/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5669, "atom1_serNum": 56399, "atom2_serNum": 56406, "donAcc_type": "standard", "distance": 2.626, "atom1_id": "///O/13/N", "atom2_id": "///O/13/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5670, "atom1_serNum": 56402, "atom2_serNum": 70153, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///O/13/O", "atom2_id": "///c/20/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5671, "atom1_serNum": 56411, "atom2_serNum": 70162, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///O/14/O", "atom2_id": "///c/21/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5672, "atom1_serNum": 56422, "atom2_serNum": 65873, "donAcc_type": "standard", "distance": 2.426, "atom1_id": "///O/16/O", "atom2_id": "///X/57/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5673, "atom1_serNum": 56437, "atom2_serNum": 56457, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///O/18/O", "atom2_id": "///O/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5674, "atom1_serNum": 56437, "atom2_serNum": 65859, "donAcc_type": "acceptable", "distance": 3.041, "atom1_id": "///O/18/O", "atom2_id": "///X/56/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5675, "atom1_serNum": 56453, "atom2_serNum": 70645, "donAcc_type": "questionable", "distance": 3.357, "atom1_id": "///O/19/NE", "atom2_id": "///c/84/NE2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5676, "atom1_serNum": 56491, "atom2_serNum": 56493, "donAcc_type": "acceptable", "distance": 2.924, "atom1_id": "///O/24/O", "atom2_id": "///O/24/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5677, "atom1_serNum": 56498, "atom2_serNum": 56517, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///O/25/O", "atom2_id": "///O/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5678, "atom1_serNum": 56525, "atom2_serNum": 76699, "donAcc_type": "standard", "distance": 3.525, "atom1_id": "///O/27/NZ", "atom2_id": "///z/233/OP2", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 5679, "atom1_serNum": 56534, "atom2_serNum": 56561, "donAcc_type": "standard", "distance": 3.210, "atom1_id": "///O/29/N", "atom2_id": "///O/32/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5680, "atom1_serNum": 56537, "atom2_serNum": 56561, "donAcc_type": "questionable", "distance": 2.700, "atom1_id": "///O/29/O", "atom2_id": "///O/32/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5681, "atom1_serNum": 56544, "atom2_serNum": 56570, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///O/30/O", "atom2_id": "///O/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5682, "atom1_serNum": 56550, "atom2_serNum": 56579, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///O/31/O", "atom2_id": "///O/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5683, "atom1_serNum": 56558, "atom2_serNum": 56588, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///O/32/O", "atom2_id": "///O/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5684, "atom1_serNum": 56561, "atom2_serNum": 56563, "donAcc_type": "standard", "distance": 2.518, "atom1_id": "///O/32/OD1", "atom2_id": "///O/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5685, "atom1_serNum": 56566, "atom2_serNum": 56597, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///O/33/O", "atom2_id": "///O/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5686, "atom1_serNum": 56573, "atom2_serNum": 56605, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///O/34/O", "atom2_id": "///O/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5687, "atom1_serNum": 56582, "atom2_serNum": 56617, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///O/35/O", "atom2_id": "///O/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5688, "atom1_serNum": 56591, "atom2_serNum": 56626, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///O/36/O", "atom2_id": "///O/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5689, "atom1_serNum": 56600, "atom2_serNum": 56634, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///O/37/O", "atom2_id": "///O/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5690, "atom1_serNum": 56608, "atom2_serNum": 56639, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///O/38/O", "atom2_id": "///O/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5691, "atom1_serNum": 56620, "atom2_serNum": 56648, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///O/39/O", "atom2_id": "///O/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5692, "atom1_serNum": 56629, "atom2_serNum": 56657, "donAcc_type": "standard", "distance": 3.383, "atom1_id": "///O/40/O", "atom2_id": "///O/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5693, "atom1_serNum": 56629, "atom2_serNum": 56661, "donAcc_type": "standard", "distance": 3.545, "atom1_id": "///O/40/O", "atom2_id": "///O/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5694, "atom1_serNum": 56637, "atom2_serNum": 56657, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///O/41/O", "atom2_id": "///O/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5695, "atom1_serNum": 56647, "atom2_serNum": 56923, "donAcc_type": "questionable", "distance": 3.040, "atom1_id": "///O/42/NZ", "atom2_id": "///O/78/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5696, "atom1_serNum": 56669, "atom2_serNum": 56696, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///O/46/N", "atom2_id": "///O/49/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5697, "atom1_serNum": 56672, "atom2_serNum": 56689, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///O/46/O", "atom2_id": "///O/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5698, "atom1_serNum": 56672, "atom2_serNum": 56698, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///O/46/O", "atom2_id": "///O/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5699, "atom1_serNum": 56674, "atom2_serNum": 56696, "donAcc_type": "acceptable", "distance": 2.379, "atom1_id": "///O/46/OG1", "atom2_id": "///O/49/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5700, "atom1_serNum": 56679, "atom2_serNum": 56706, "donAcc_type": "standard", "distance": 3.648, "atom1_id": "///O/47/O", "atom2_id": "///O/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5701, "atom1_serNum": 56692, "atom2_serNum": 56717, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///O/49/O", "atom2_id": "///O/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5702, "atom1_serNum": 56701, "atom2_serNum": 56725, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///O/50/O", "atom2_id": "///O/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5703, "atom1_serNum": 56709, "atom2_serNum": 56733, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///O/51/O", "atom2_id": "///O/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5704, "atom1_serNum": 56713, "atom2_serNum": 56744, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///O/52/O", "atom2_id": "///O/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5705, "atom1_serNum": 56720, "atom2_serNum": 56752, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///O/53/O", "atom2_id": "///O/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5706, "atom1_serNum": 56728, "atom2_serNum": 56768, "donAcc_type": "standard", "distance": 3.141, "atom1_id": "///O/54/O", "atom2_id": "///O/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5707, "atom1_serNum": 56742, "atom2_serNum": 70382, "donAcc_type": "standard", "distance": 3.400, "atom1_id": "///O/55/NH1", "atom2_id": "///c/49/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5708, "atom1_serNum": 56747, "atom2_serNum": 70351, "donAcc_type": "questionable", "distance": 3.254, "atom1_id": "///O/56/O", "atom2_id": "///c/45/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5709, "atom1_serNum": 56747, "atom2_serNum": 70362, "donAcc_type": "standard", "distance": 3.927, "atom1_id": "///O/56/O", "atom2_id": "///c/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5710, "atom1_serNum": 56751, "atom2_serNum": 70392, "donAcc_type": "questionable", "distance": 2.808, "atom1_id": "///O/56/OD2", "atom2_id": "///c/50/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5711, "atom1_serNum": 56751, "atom2_serNum": 70408, "donAcc_type": "acceptable", "distance": 3.176, "atom1_id": "///O/56/OD2", "atom2_id": "///c/52/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5712, "atom1_serNum": 56755, "atom2_serNum": 70351, "donAcc_type": "questionable", "distance": 3.039, "atom1_id": "///O/57/O", "atom2_id": "///c/45/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5713, "atom1_serNum": 56758, "atom2_serNum": 56764, "donAcc_type": "acceptable", "distance": 2.920, "atom1_id": "///O/58/N", "atom2_id": "///O/58/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5714, "atom1_serNum": 56787, "atom2_serNum": 56811, "donAcc_type": "standard", "distance": 3.598, "atom1_id": "///O/62/O", "atom2_id": "///O/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5715, "atom1_serNum": 56796, "atom2_serNum": 56811, "donAcc_type": "standard", "distance": 2.598, "atom1_id": "///O/63/O", "atom2_id": "///O/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5716, "atom1_serNum": 56796, "atom2_serNum": 56822, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///O/63/O", "atom2_id": "///O/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5717, "atom1_serNum": 56796, "atom2_serNum": 56829, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///O/63/O", "atom2_id": "///O/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5718, "atom1_serNum": 56834, "atom2_serNum": 56843, "donAcc_type": "acceptable", "distance": 3.163, "atom1_id": "///O/67/OG1", "atom2_id": "///O/69/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5719, "atom1_serNum": 56851, "atom2_serNum": 56884, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///O/70/O", "atom2_id": "///O/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5720, "atom1_serNum": 56860, "atom2_serNum": 56892, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///O/71/O", "atom2_id": "///O/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5721, "atom1_serNum": 56868, "atom2_serNum": 56900, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///O/72/O", "atom2_id": "///O/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5722, "atom1_serNum": 56876, "atom2_serNum": 56909, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///O/73/O", "atom2_id": "///O/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5723, "atom1_serNum": 56887, "atom2_serNum": 56914, "donAcc_type": "acceptable", "distance": 2.441, "atom1_id": "///O/74/O", "atom2_id": "///O/77/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5724, "atom1_serNum": 56887, "atom2_serNum": 56915, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///O/74/O", "atom2_id": "///O/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5725, "atom1_serNum": 56895, "atom2_serNum": 56924, "donAcc_type": "standard", "distance": 2.832, "atom1_id": "///O/75/O", "atom2_id": "///O/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5726, "atom1_serNum": 56895, "atom2_serNum": 56928, "donAcc_type": "standard", "distance": 3.454, "atom1_id": "///O/75/O", "atom2_id": "///O/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5727, "atom1_serNum": 56948, "atom2_serNum": 56954, "donAcc_type": "standard", "distance": 2.602, "atom1_id": "///O/83/N", "atom2_id": "///O/83/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5728, "atom1_serNum": 56967, "atom2_serNum": 56996, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///O/85/O", "atom2_id": "///O/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5729, "atom1_serNum": 56971, "atom2_serNum": 56979, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///O/86/N", "atom2_id": "///O/86/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5730, "atom1_serNum": 56974, "atom2_serNum": 57008, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///O/86/O", "atom2_id": "///O/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5731, "atom1_serNum": 56980, "atom2_serNum": 56986, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///O/87/N", "atom2_id": "///O/87/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5732, "atom1_serNum": 56983, "atom2_serNum": 57018, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///O/87/O", "atom2_id": "///O/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5733, "atom1_serNum": 56986, "atom2_serNum": 56988, "donAcc_type": "standard", "distance": 2.421, "atom1_id": "///O/87/OD1", "atom2_id": "///O/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5734, "atom1_serNum": 56986, "atom2_serNum": 57357, "donAcc_type": "acceptable", "distance": 2.450, "atom1_id": "///O/87/OD1", "atom2_id": "///O/129/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5735, "atom1_serNum": 56987, "atom2_serNum": 57357, "donAcc_type": "acceptable", "distance": 2.877, "atom1_id": "///O/87/OD2", "atom2_id": "///O/129/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5736, "atom1_serNum": 56991, "atom2_serNum": 57026, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///O/88/O", "atom2_id": "///O/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5737, "atom1_serNum": 56999, "atom2_serNum": 57034, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///O/89/O", "atom2_id": "///O/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5738, "atom1_serNum": 57011, "atom2_serNum": 57043, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///O/90/O", "atom2_id": "///O/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5739, "atom1_serNum": 57021, "atom2_serNum": 57052, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///O/91/O", "atom2_id": "///O/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5740, "atom1_serNum": 57029, "atom2_serNum": 57057, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///O/92/O", "atom2_id": "///O/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5741, "atom1_serNum": 57037, "atom2_serNum": 57064, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///O/93/O", "atom2_id": "///O/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5742, "atom1_serNum": 57046, "atom2_serNum": 57069, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///O/94/O", "atom2_id": "///O/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5743, "atom1_serNum": 57055, "atom2_serNum": 57076, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///O/95/O", "atom2_id": "///O/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5744, "atom1_serNum": 57060, "atom2_serNum": 57087, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///O/96/O", "atom2_id": "///O/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5745, "atom1_serNum": 57067, "atom2_serNum": 57096, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///O/97/O", "atom2_id": "///O/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5746, "atom1_serNum": 57072, "atom2_serNum": 57106, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///O/98/O", "atom2_id": "///O/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5747, "atom1_serNum": 57079, "atom2_serNum": 57114, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///O/99/O", "atom2_id": "///O/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5748, "atom1_serNum": 57086, "atom2_serNum": 57263, "donAcc_type": "standard", "distance": 2.396, "atom1_id": "///O/99/NH2", "atom2_id": "///O/119/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5749, "atom1_serNum": 57086, "atom2_serNum": 57465, "donAcc_type": "acceptable", "distance": 3.632, "atom1_id": "///O/99/NH2", "atom2_id": "///O/141/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5750, "atom1_serNum": 57099, "atom2_serNum": 57134, "donAcc_type": "standard", "distance": 3.732, "atom1_id": "///O/101/O", "atom2_id": "///O/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5751, "atom1_serNum": 57105, "atom2_serNum": 57168, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///O/101/NE2", "atom2_id": "///O/108/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5752, "atom1_serNum": 57156, "atom2_serNum": 57170, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///O/107/O", "atom2_id": "///O/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5753, "atom1_serNum": 57165, "atom2_serNum": 57192, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///O/108/O", "atom2_id": "///O/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5754, "atom1_serNum": 57169, "atom2_serNum": 57179, "donAcc_type": "standard", "distance": 3.269, "atom1_id": "///O/108/OD2", "atom2_id": "///O/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5755, "atom1_serNum": 57169, "atom2_serNum": 57187, "donAcc_type": "standard", "distance": 2.674, "atom1_id": "///O/108/OD2", "atom2_id": "///O/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5756, "atom1_serNum": 57173, "atom2_serNum": 57201, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///O/109/O", "atom2_id": "///O/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5757, "atom1_serNum": 57182, "atom2_serNum": 57212, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///O/110/O", "atom2_id": "///O/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5758, "atom1_serNum": 57190, "atom2_serNum": 57223, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///O/111/O", "atom2_id": "///O/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5759, "atom1_serNum": 57195, "atom2_serNum": 57231, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///O/112/O", "atom2_id": "///O/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5760, "atom1_serNum": 57204, "atom2_serNum": 57239, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///O/113/O", "atom2_id": "///O/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5761, "atom1_serNum": 57215, "atom2_serNum": 57247, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///O/114/O", "atom2_id": "///O/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5762, "atom1_serNum": 57226, "atom2_serNum": 57255, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///O/115/O", "atom2_id": "///O/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5763, "atom1_serNum": 57234, "atom2_serNum": 57264, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///O/116/O", "atom2_id": "///O/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5764, "atom1_serNum": 57242, "atom2_serNum": 57270, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///O/117/O", "atom2_id": "///O/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5765, "atom1_serNum": 57250, "atom2_serNum": 57281, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///O/118/O", "atom2_id": "///O/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5766, "atom1_serNum": 57258, "atom2_serNum": 57289, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///O/119/O", "atom2_id": "///O/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5767, "atom1_serNum": 57267, "atom2_serNum": 57299, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///O/120/O", "atom2_id": "///O/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5768, "atom1_serNum": 57273, "atom2_serNum": 57310, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///O/121/O", "atom2_id": "///O/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5769, "atom1_serNum": 57284, "atom2_serNum": 57318, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///O/122/O", "atom2_id": "///O/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5770, "atom1_serNum": 57292, "atom2_serNum": 57323, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///O/123/O", "atom2_id": "///O/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5771, "atom1_serNum": 57302, "atom2_serNum": 57334, "donAcc_type": "standard", "distance": 3.485, "atom1_id": "///O/124/O", "atom2_id": "///O/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5772, "atom1_serNum": 57313, "atom2_serNum": 57346, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///O/125/O", "atom2_id": "///O/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5773, "atom1_serNum": 57321, "atom2_serNum": 57358, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///O/126/O", "atom2_id": "///O/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5774, "atom1_serNum": 57326, "atom2_serNum": 57367, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///O/127/O", "atom2_id": "///O/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5775, "atom1_serNum": 57337, "atom2_serNum": 57374, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///O/128/O", "atom2_id": "///O/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5776, "atom1_serNum": 57349, "atom2_serNum": 57394, "donAcc_type": "standard", "distance": 3.333, "atom1_id": "///O/129/O", "atom2_id": "///O/134/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5777, "atom1_serNum": 57361, "atom2_serNum": 57383, "donAcc_type": "standard", "distance": 3.385, "atom1_id": "///O/130/O", "atom2_id": "///O/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5778, "atom1_serNum": 57412, "atom2_serNum": 57431, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///O/136/O", "atom2_id": "///O/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5779, "atom1_serNum": 57474, "atom2_serNum": 57481, "donAcc_type": "standard", "distance": 2.359, "atom1_id": "///O/142/OE2", "atom2_id": "///O/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5780, "atom1_serNum": 57474, "atom2_serNum": 57487, "donAcc_type": "standard", "distance": 3.321, "atom1_id": "///O/142/OE2", "atom2_id": "///O/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5781, "atom1_serNum": 57484, "atom2_serNum": 57494, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///O/144/O", "atom2_id": "///O/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5782, "atom1_serNum": 57508, "atom2_serNum": 57518, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///O/148/O", "atom2_id": "///O/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5783, "atom1_serNum": 57529, "atom2_serNum": 58068, "donAcc_type": "questionable", "distance": 2.963, "atom1_id": "///P/16/O", "atom2_id": "///P/88/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5784, "atom1_serNum": 57559, "atom2_serNum": 57563, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///P/20/NE2", "atom2_id": "///P/21/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5785, "atom1_serNum": 57559, "atom2_serNum": 57588, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///P/20/NE2", "atom2_id": "///P/25/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5786, "atom1_serNum": 57585, "atom2_serNum": 57592, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///P/25/N", "atom2_id": "///P/25/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5787, "atom1_serNum": 57602, "atom2_serNum": 58090, "donAcc_type": "acceptable", "distance": 2.546, "atom1_id": "///P/27/N", "atom2_id": "///P/91/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5788, "atom1_serNum": 57605, "atom2_serNum": 58085, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///P/27/O", "atom2_id": "///P/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5789, "atom1_serNum": 57605, "atom2_serNum": 58090, "donAcc_type": "acceptable", "distance": 2.948, "atom1_id": "///P/27/O", "atom2_id": "///P/91/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5790, "atom1_serNum": 57605, "atom2_serNum": 58092, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///P/27/O", "atom2_id": "///P/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5791, "atom1_serNum": 57620, "atom2_serNum": 58095, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///P/29/N", "atom2_id": "///P/92/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5792, "atom1_serNum": 57623, "atom2_serNum": 58105, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///P/29/O", "atom2_id": "///P/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5793, "atom1_serNum": 57627, "atom2_serNum": 57746, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///P/30/O", "atom2_id": "///P/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5794, "atom1_serNum": 57631, "atom2_serNum": 58108, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///P/31/N", "atom2_id": "///P/94/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5795, "atom1_serNum": 57634, "atom2_serNum": 58123, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///P/31/O", "atom2_id": "///P/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5796, "atom1_serNum": 57637, "atom2_serNum": 57732, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///P/32/N", "atom2_id": "///P/43/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5797, "atom1_serNum": 57640, "atom2_serNum": 57729, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///P/32/O", "atom2_id": "///P/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5798, "atom1_serNum": 57647, "atom2_serNum": 58126, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///P/33/N", "atom2_id": "///P/96/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5799, "atom1_serNum": 57650, "atom2_serNum": 58140, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///P/33/O", "atom2_id": "///P/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5800, "atom1_serNum": 57655, "atom2_serNum": 57714, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///P/34/N", "atom2_id": "///P/41/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5801, "atom1_serNum": 57658, "atom2_serNum": 57711, "donAcc_type": "standard", "distance": 2.477, "atom1_id": "///P/34/O", "atom2_id": "///P/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5802, "atom1_serNum": 57666, "atom2_serNum": 58143, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///P/35/N", "atom2_id": "///P/98/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5803, "atom1_serNum": 57671, "atom2_serNum": 57699, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///P/36/N", "atom2_id": "///P/39/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5804, "atom1_serNum": 57676, "atom2_serNum": 57694, "donAcc_type": "acceptable", "distance": 2.453, "atom1_id": "///P/36/OG", "atom2_id": "///P/38/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5805, "atom1_serNum": 57694, "atom2_serNum": 57696, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///P/38/OD1", "atom2_id": "///P/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5806, "atom1_serNum": 57707, "atom2_serNum": 57843, "donAcc_type": "standard", "distance": 3.471, "atom1_id": "///P/40/O", "atom2_id": "///P/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5807, "atom1_serNum": 57725, "atom2_serNum": 57829, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///P/42/O", "atom2_id": "///P/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5808, "atom1_serNum": 57725, "atom2_serNum": 57832, "donAcc_type": "questionable", "distance": 3.199, "atom1_id": "///P/42/O", "atom2_id": "///P/56/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5809, "atom1_serNum": 57738, "atom2_serNum": 57802, "donAcc_type": "acceptable", "distance": 2.840, "atom1_id": "///P/43/NE2", "atom2_id": "///P/52/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5810, "atom1_serNum": 57739, "atom2_serNum": 57815, "donAcc_type": "standard", "distance": 3.547, "atom1_id": "///P/44/N", "atom2_id": "///P/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5811, "atom1_serNum": 57742, "atom2_serNum": 57802, "donAcc_type": "acceptable", "distance": 2.285, "atom1_id": "///P/44/O", "atom2_id": "///P/52/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5812, "atom1_serNum": 57742, "atom2_serNum": 57804, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///P/44/O", "atom2_id": "///P/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5813, "atom1_serNum": 57753, "atom2_serNum": 57759, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///P/46/N", "atom2_id": "///P/46/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5814, "atom1_serNum": 57753, "atom2_serNum": 57791, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///P/46/N", "atom2_id": "///P/51/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5815, "atom1_serNum": 57756, "atom2_serNum": 57775, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///P/46/O", "atom2_id": "///P/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5816, "atom1_serNum": 57759, "atom2_serNum": 57775, "donAcc_type": "standard", "distance": 2.694, "atom1_id": "///P/46/OD1", "atom2_id": "///P/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5817, "atom1_serNum": 57759, "atom2_serNum": 57779, "donAcc_type": "standard", "distance": 3.089, "atom1_id": "///P/46/OD1", "atom2_id": "///P/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5818, "atom1_serNum": 57760, "atom2_serNum": 57795, "donAcc_type": "questionable", "distance": 3.014, "atom1_id": "///P/46/OD2", "atom2_id": "///P/51/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5819, "atom1_serNum": 57839, "atom2_serNum": 57851, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///P/57/O", "atom2_id": "///P/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5820, "atom1_serNum": 57867, "atom2_serNum": 58008, "donAcc_type": "standard", "distance": 2.623, "atom1_id": "///P/61/NZ", "atom2_id": "///P/80/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5821, "atom1_serNum": 57871, "atom2_serNum": 57884, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///P/62/O", "atom2_id": "///P/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5822, "atom1_serNum": 57887, "atom2_serNum": 57908, "donAcc_type": "standard", "distance": 3.085, "atom1_id": "///P/64/O", "atom2_id": "///P/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5823, "atom1_serNum": 57887, "atom2_serNum": 57916, "donAcc_type": "standard", "distance": 3.086, "atom1_id": "///P/64/O", "atom2_id": "///P/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5824, "atom1_serNum": 57892, "atom2_serNum": 57916, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///P/65/O", "atom2_id": "///P/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5825, "atom1_serNum": 57928, "atom2_serNum": 57930, "donAcc_type": "acceptable", "distance": 2.650, "atom1_id": "///P/69/O", "atom2_id": "///P/69/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5826, "atom1_serNum": 57934, "atom2_serNum": 57961, "donAcc_type": "standard", "distance": 3.136, "atom1_id": "///P/70/O", "atom2_id": "///P/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5827, "atom1_serNum": 57940, "atom2_serNum": 57966, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///P/71/O", "atom2_id": "///P/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5828, "atom1_serNum": 57947, "atom2_serNum": 57974, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///P/72/O", "atom2_id": "///P/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5829, "atom1_serNum": 57959, "atom2_serNum": 57982, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///P/73/O", "atom2_id": "///P/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5830, "atom1_serNum": 57964, "atom2_serNum": 57987, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///P/74/O", "atom2_id": "///P/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5831, "atom1_serNum": 57969, "atom2_serNum": 57992, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///P/75/O", "atom2_id": "///P/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5832, "atom1_serNum": 57977, "atom2_serNum": 58001, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///P/76/O", "atom2_id": "///P/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5833, "atom1_serNum": 57985, "atom2_serNum": 58009, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///P/77/O", "atom2_id": "///P/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5834, "atom1_serNum": 57990, "atom2_serNum": 58016, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///P/78/O", "atom2_id": "///P/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5835, "atom1_serNum": 57995, "atom2_serNum": 58021, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///P/79/O", "atom2_id": "///P/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5836, "atom1_serNum": 58004, "atom2_serNum": 58030, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///P/80/O", "atom2_id": "///P/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5837, "atom1_serNum": 58012, "atom2_serNum": 58041, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///P/81/O", "atom2_id": "///P/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5838, "atom1_serNum": 58019, "atom2_serNum": 58047, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///P/82/O", "atom2_id": "///P/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5839, "atom1_serNum": 58024, "atom2_serNum": 58056, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///P/83/O", "atom2_id": "///P/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5840, "atom1_serNum": 58033, "atom2_serNum": 58065, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///P/84/O", "atom2_id": "///P/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5841, "atom1_serNum": 58044, "atom2_serNum": 58073, "donAcc_type": "standard", "distance": 3.025, "atom1_id": "///P/85/O", "atom2_id": "///P/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5842, "atom1_serNum": 58044, "atom2_serNum": 58077, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///P/85/O", "atom2_id": "///P/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5843, "atom1_serNum": 58088, "atom2_serNum": 58326, "donAcc_type": "standard", "distance": 3.558, "atom1_id": "///P/91/O", "atom2_id": "///P/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5844, "atom1_serNum": 58097, "atom2_serNum": 58329, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///P/93/N", "atom2_id": "///P/125/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5845, "atom1_serNum": 58100, "atom2_serNum": 58343, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///P/93/O", "atom2_id": "///P/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5846, "atom1_serNum": 58111, "atom2_serNum": 58347, "donAcc_type": "acceptable", "distance": 2.973, "atom1_id": "///P/94/ND1", "atom2_id": "///P/128/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5847, "atom1_serNum": 58115, "atom2_serNum": 58350, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///P/95/N", "atom2_id": "///P/128/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5848, "atom1_serNum": 58118, "atom2_serNum": 58366, "donAcc_type": "standard", "distance": 3.334, "atom1_id": "///P/95/O", "atom2_id": "///P/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5849, "atom1_serNum": 58132, "atom2_serNum": 58369, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///P/97/N", "atom2_id": "///P/130/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5850, "atom1_serNum": 58135, "atom2_serNum": 58383, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///P/97/O", "atom2_id": "///P/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5851, "atom1_serNum": 58163, "atom2_serNum": 58193, "donAcc_type": "standard", "distance": 3.255, "atom1_id": "///P/101/N", "atom2_id": "///P/105/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5852, "atom1_serNum": 58166, "atom2_serNum": 58171, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///P/101/O", "atom2_id": "///P/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5853, "atom1_serNum": 58166, "atom2_serNum": 58179, "donAcc_type": "standard", "distance": 3.334, "atom1_id": "///P/101/O", "atom2_id": "///P/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5854, "atom1_serNum": 58178, "atom2_serNum": 58438, "donAcc_type": "acceptable", "distance": 3.854, "atom1_id": "///P/103/ND2", "atom2_id": "///P/139/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5855, "atom1_serNum": 58195, "atom2_serNum": 58206, "donAcc_type": "acceptable", "distance": 3.386, "atom1_id": "///P/105/OG1", "atom2_id": "///P/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5856, "atom1_serNum": 58223, "atom2_serNum": 58235, "donAcc_type": "standard", "distance": 3.459, "atom1_id": "///P/109/O", "atom2_id": "///P/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5857, "atom1_serNum": 58234, "atom2_serNum": 58255, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///P/111/O", "atom2_id": "///P/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5858, "atom1_serNum": 58238, "atom2_serNum": 58260, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///P/112/O", "atom2_id": "///P/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5859, "atom1_serNum": 58243, "atom2_serNum": 58268, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///P/113/O", "atom2_id": "///P/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5860, "atom1_serNum": 58247, "atom2_serNum": 69521, "donAcc_type": "questionable", "distance": 3.066, "atom1_id": "///P/113/OE1", "atom2_id": "///b/44/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5861, "atom1_serNum": 58252, "atom2_serNum": 58279, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///P/114/O", "atom2_id": "///P/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5862, "atom1_serNum": 58258, "atom2_serNum": 58284, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///P/115/O", "atom2_id": "///P/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5863, "atom1_serNum": 58263, "atom2_serNum": 58292, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///P/116/O", "atom2_id": "///P/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5864, "atom1_serNum": 58271, "atom2_serNum": 58297, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///P/117/O", "atom2_id": "///P/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5865, "atom1_serNum": 58271, "atom2_serNum": 69582, "donAcc_type": "questionable", "distance": 2.829, "atom1_id": "///P/117/O", "atom2_id": "///b/52/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5866, "atom1_serNum": 58282, "atom2_serNum": 58308, "donAcc_type": "standard", "distance": 3.006, "atom1_id": "///P/118/O", "atom2_id": "///P/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5867, "atom1_serNum": 58311, "atom2_serNum": 58313, "donAcc_type": "acceptable", "distance": 2.978, "atom1_id": "///P/122/O", "atom2_id": "///P/122/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5868, "atom1_serNum": 58338, "atom2_serNum": 69617, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///P/126/O", "atom2_id": "///b/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5869, "atom1_serNum": 58393, "atom2_serNum": 58404, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///P/133/O", "atom2_id": "///P/135/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5870, "atom1_serNum": 58466, "atom2_serNum": 69356, "donAcc_type": "standard", "distance": 2.267, "atom1_id": "///P/142/NH1", "atom2_id": "///b/23/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5871, "atom1_serNum": 58466, "atom2_serNum": 69377, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///P/142/NH1", "atom2_id": "///b/26/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5872, "atom1_serNum": 58467, "atom2_serNum": 69362, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///P/142/NH2", "atom2_id": "///b/24/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5873, "atom1_serNum": 58484, "atom2_serNum": 58507, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///P/145/O", "atom2_id": "///P/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5874, "atom1_serNum": 58488, "atom2_serNum": 69396, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///P/146/O", "atom2_id": "///b/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5875, "atom1_serNum": 58510, "atom2_serNum": 58531, "donAcc_type": "standard", "distance": 3.449, "atom1_id": "///P/148/O", "atom2_id": "///P/150/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5876, "atom1_serNum": 58573, "atom2_serNum": 58577, "donAcc_type": "standard", "distance": 2.586, "atom1_id": "///Q/14/NZ", "atom2_id": "///Q/15/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5877, "atom1_serNum": 58588, "atom2_serNum": 58604, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///Q/16/O", "atom2_id": "///Q/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5878, "atom1_serNum": 58588, "atom2_serNum": 62427, "donAcc_type": "questionable", "distance": 3.363, "atom1_id": "///Q/16/O", "atom2_id": "///T/90/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5879, "atom1_serNum": 58590, "atom2_serNum": 62434, "donAcc_type": "acceptable", "distance": 2.759, "atom1_id": "///Q/16/OG1", "atom2_id": "///T/91/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5880, "atom1_serNum": 58592, "atom2_serNum": 58622, "donAcc_type": "standard", "distance": 2.443, "atom1_id": "///Q/17/N", "atom2_id": "///Q/20/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5881, "atom1_serNum": 58595, "atom2_serNum": 58619, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///Q/17/O", "atom2_id": "///Q/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5882, "atom1_serNum": 58604, "atom2_serNum": 62427, "donAcc_type": "standard", "distance": 3.203, "atom1_id": "///Q/18/N", "atom2_id": "///T/90/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5883, "atom1_serNum": 58613, "atom2_serNum": 62410, "donAcc_type": "standard", "distance": 2.601, "atom1_id": "///Q/18/NH1", "atom2_id": "///T/88/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5884, "atom1_serNum": 58626, "atom2_serNum": 58632, "donAcc_type": "standard", "distance": 2.640, "atom1_id": "///Q/21/N", "atom2_id": "///Q/21/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5885, "atom1_serNum": 58629, "atom2_serNum": 58659, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///Q/21/O", "atom2_id": "///Q/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5886, "atom1_serNum": 58637, "atom2_serNum": 58667, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///Q/22/O", "atom2_id": "///Q/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5887, "atom1_serNum": 58645, "atom2_serNum": 58675, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///Q/23/O", "atom2_id": "///Q/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5888, "atom1_serNum": 58670, "atom2_serNum": 58683, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///Q/26/O", "atom2_id": "///Q/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5889, "atom1_serNum": 58694, "atom2_serNum": 58718, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "///Q/29/O", "atom2_id": "///Q/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5890, "atom1_serNum": 58694, "atom2_serNum": 58727, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///Q/29/O", "atom2_id": "///Q/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5891, "atom1_serNum": 58696, "atom2_serNum": 58716, "donAcc_type": "acceptable", "distance": 3.585, "atom1_id": "///Q/29/OG", "atom2_id": "///Q/31/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5892, "atom1_serNum": 58700, "atom2_serNum": 58735, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///Q/30/O", "atom2_id": "///Q/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5893, "atom1_serNum": 58709, "atom2_serNum": 58716, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///Q/31/N", "atom2_id": "///Q/31/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5894, "atom1_serNum": 58712, "atom2_serNum": 58750, "donAcc_type": "questionable", "distance": 2.764, "atom1_id": "///Q/31/O", "atom2_id": "///Q/35/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5895, "atom1_serNum": 58721, "atom2_serNum": 58752, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///Q/32/O", "atom2_id": "///Q/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5896, "atom1_serNum": 58730, "atom2_serNum": 58752, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///Q/33/O", "atom2_id": "///Q/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5897, "atom1_serNum": 58730, "atom2_serNum": 58760, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///Q/33/O", "atom2_id": "///Q/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5898, "atom1_serNum": 58746, "atom2_serNum": 62415, "donAcc_type": "standard", "distance": 3.701, "atom1_id": "///Q/35/O", "atom2_id": "///T/88/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5899, "atom1_serNum": 58771, "atom2_serNum": 58797, "donAcc_type": "acceptable", "distance": 3.136, "atom1_id": "///Q/37/OH", "atom2_id": "///Q/41/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5900, "atom1_serNum": 58775, "atom2_serNum": 58810, "donAcc_type": "standard", "distance": 3.432, "atom1_id": "///Q/38/O", "atom2_id": "///Q/42/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5901, "atom1_serNum": 58777, "atom2_serNum": 58801, "donAcc_type": "acceptable", "distance": 3.164, "atom1_id": "///Q/38/OG", "atom2_id": "///Q/41/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5902, "atom1_serNum": 58781, "atom2_serNum": 58803, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///Q/39/O", "atom2_id": "///Q/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5903, "atom1_serNum": 58781, "atom2_serNum": 58814, "donAcc_type": "standard", "distance": 3.519, "atom1_id": "///Q/39/O", "atom2_id": "///Q/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5904, "atom1_serNum": 58794, "atom2_serNum": 58801, "donAcc_type": "standard", "distance": 2.648, "atom1_id": "///Q/41/N", "atom2_id": "///Q/41/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5905, "atom1_serNum": 58806, "atom2_serNum": 58836, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///Q/42/O", "atom2_id": "///Q/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5906, "atom1_serNum": 58806, "atom2_serNum": 58844, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///Q/42/O", "atom2_id": "///Q/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5907, "atom1_serNum": 58817, "atom2_serNum": 58883, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///Q/43/O", "atom2_id": "///Q/50/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5908, "atom1_serNum": 58828, "atom2_serNum": 58880, "donAcc_type": "standard", "distance": 2.365, "atom1_id": "///Q/44/O", "atom2_id": "///Q/50/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5909, "atom1_serNum": 58828, "atom2_serNum": 58883, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///Q/44/O", "atom2_id": "///Q/50/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5910, "atom1_serNum": 58834, "atom2_serNum": 58922, "donAcc_type": "questionable", "distance": 2.993, "atom1_id": "///Q/44/NH1", "atom2_id": "///Q/54/NE2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5911, "atom1_serNum": 58835, "atom2_serNum": 59148, "donAcc_type": "standard", "distance": 2.264, "atom1_id": "///Q/44/NH2", "atom2_id": "///Q/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5912, "atom1_serNum": 58847, "atom2_serNum": 58849, "donAcc_type": "acceptable", "distance": 2.986, "atom1_id": "///Q/46/O", "atom2_id": "///Q/46/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5913, "atom1_serNum": 58868, "atom2_serNum": 58903, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///Q/49/O", "atom2_id": "///Q/52/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5914, "atom1_serNum": 58916, "atom2_serNum": 58945, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///Q/54/O", "atom2_id": "///Q/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5915, "atom1_serNum": 58926, "atom2_serNum": 58954, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///Q/55/O", "atom2_id": "///Q/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5916, "atom1_serNum": 58932, "atom2_serNum": 58965, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///Q/56/O", "atom2_id": "///Q/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5917, "atom1_serNum": 58940, "atom2_serNum": 58973, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///Q/57/O", "atom2_id": "///Q/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5918, "atom1_serNum": 58948, "atom2_serNum": 58984, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///Q/58/O", "atom2_id": "///Q/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5919, "atom1_serNum": 58948, "atom2_serNum": 58992, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///Q/58/O", "atom2_id": "///Q/62/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5920, "atom1_serNum": 58957, "atom2_serNum": 58993, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///Q/59/O", "atom2_id": "///Q/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5921, "atom1_serNum": 58968, "atom2_serNum": 58998, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///Q/60/O", "atom2_id": "///Q/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5922, "atom1_serNum": 58976, "atom2_serNum": 59007, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///Q/61/O", "atom2_id": "///Q/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5923, "atom1_serNum": 58987, "atom2_serNum": 59016, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///Q/62/O", "atom2_id": "///Q/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5924, "atom1_serNum": 58996, "atom2_serNum": 59085, "donAcc_type": "questionable", "distance": 3.325, "atom1_id": "///Q/63/O", "atom2_id": "///Q/74/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5925, "atom1_serNum": 59006, "atom2_serNum": 59229, "donAcc_type": "standard", "distance": 2.546, "atom1_id": "///Q/64/NZ", "atom2_id": "///Q/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5926, "atom1_serNum": 59019, "atom2_serNum": 59030, "donAcc_type": "standard", "distance": 3.240, "atom1_id": "///Q/66/O", "atom2_id": "///Q/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5927, "atom1_serNum": 59040, "atom2_serNum": 59052, "donAcc_type": "standard", "distance": 2.603, "atom1_id": "///Q/69/O", "atom2_id": "///Q/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5928, "atom1_serNum": 59069, "atom2_serNum": 59334, "donAcc_type": "standard", "distance": 3.171, "atom1_id": "///Q/72/NZ", "atom2_id": "///Q/106/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5929, "atom1_serNum": 59080, "atom2_serNum": 59229, "donAcc_type": "questionable", "distance": 3.033, "atom1_id": "///Q/74/O", "atom2_id": "///Q/93/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5930, "atom1_serNum": 59093, "atom2_serNum": 59229, "donAcc_type": "standard", "distance": 3.581, "atom1_id": "///Q/76/N", "atom2_id": "///Q/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5931, "atom1_serNum": 59096, "atom2_serNum": 59241, "donAcc_type": "standard", "distance": 2.400, "atom1_id": "///Q/76/O", "atom2_id": "///Q/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5932, "atom1_serNum": 59109, "atom2_serNum": 59244, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///Q/78/N", "atom2_id": "///Q/95/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5933, "atom1_serNum": 59112, "atom2_serNum": 59252, "donAcc_type": "standard", "distance": 3.271, "atom1_id": "///Q/78/O", "atom2_id": "///Q/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5934, "atom1_serNum": 59114, "atom2_serNum": 59129, "donAcc_type": "acceptable", "distance": 3.498, "atom1_id": "///Q/78/OG1", "atom2_id": "///Q/80/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5935, "atom1_serNum": 59137, "atom2_serNum": 59410, "donAcc_type": "acceptable", "distance": 2.449, "atom1_id": "///Q/81/O", "atom2_id": "///Q/115/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5936, "atom1_serNum": 59143, "atom2_serNum": 59422, "donAcc_type": "standard", "distance": 2.605, "atom1_id": "///Q/81/NH1", "atom2_id": "///Q/117/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5937, "atom1_serNum": 59145, "atom2_serNum": 59151, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///Q/82/N", "atom2_id": "///Q/82/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5938, "atom1_serNum": 59156, "atom2_serNum": 59411, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///Q/83/O", "atom2_id": "///Q/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5939, "atom1_serNum": 59164, "atom2_serNum": 59177, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///Q/84/O", "atom2_id": "///Q/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5940, "atom1_serNum": 59169, "atom2_serNum": 59392, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///Q/85/N", "atom2_id": "///Q/114/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5941, "atom1_serNum": 59172, "atom2_serNum": 59385, "donAcc_type": "standard", "distance": 3.332, "atom1_id": "///Q/85/O", "atom2_id": "///Q/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5942, "atom1_serNum": 59180, "atom2_serNum": 59201, "donAcc_type": "standard", "distance": 3.379, "atom1_id": "///Q/86/O", "atom2_id": "///Q/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5943, "atom1_serNum": 59188, "atom2_serNum": 59209, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "///Q/87/O", "atom2_id": "///Q/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5944, "atom1_serNum": 59237, "atom2_serNum": 59320, "donAcc_type": "standard", "distance": 3.756, "atom1_id": "///Q/94/O", "atom2_id": "///Q/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5945, "atom1_serNum": 59245, "atom2_serNum": 59306, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///Q/96/N", "atom2_id": "///Q/103/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5946, "atom1_serNum": 59248, "atom2_serNum": 59264, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///Q/96/O", "atom2_id": "///Q/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5947, "atom1_serNum": 59248, "atom2_serNum": 59288, "donAcc_type": "questionable", "distance": 3.209, "atom1_id": "///Q/96/O", "atom2_id": "///Q/101/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5948, "atom1_serNum": 59248, "atom2_serNum": 59303, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///Q/96/O", "atom2_id": "///Q/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5949, "atom1_serNum": 59255, "atom2_serNum": 59272, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///Q/97/O", "atom2_id": "///Q/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5950, "atom1_serNum": 59264, "atom2_serNum": 59288, "donAcc_type": "standard", "distance": 3.187, "atom1_id": "///Q/98/N", "atom2_id": "///Q/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5951, "atom1_serNum": 59267, "atom2_serNum": 59276, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///Q/98/O", "atom2_id": "///Q/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5952, "atom1_serNum": 59270, "atom2_serNum": 59448, "donAcc_type": "acceptable", "distance": 2.412, "atom1_id": "///Q/98/OD1", "atom2_id": "///Q/120/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5953, "atom1_serNum": 59271, "atom2_serNum": 59448, "donAcc_type": "acceptable", "distance": 3.120, "atom1_id": "///Q/98/ND2", "atom2_id": "///Q/120/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5954, "atom1_serNum": 59288, "atom2_serNum": 59303, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///Q/101/O", "atom2_id": "///Q/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5955, "atom1_serNum": 59318, "atom2_serNum": 59320, "donAcc_type": "standard", "distance": 3.129, "atom1_id": "///Q/104/OE1", "atom2_id": "///Q/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5956, "atom1_serNum": 59318, "atom2_serNum": 59323, "donAcc_type": "questionable", "distance": 2.935, "atom1_id": "///Q/104/OE1", "atom2_id": "///Q/105/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5957, "atom1_serNum": 59347, "atom2_serNum": 59360, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///Q/108/O", "atom2_id": "///Q/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5958, "atom1_serNum": 59347, "atom2_serNum": 59369, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///Q/108/O", "atom2_id": "///Q/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5959, "atom1_serNum": 59372, "atom2_serNum": 59389, "donAcc_type": "standard", "distance": 3.553, "atom1_id": "///Q/111/O", "atom2_id": "///Q/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5960, "atom1_serNum": 59402, "atom2_serNum": 59431, "donAcc_type": "questionable", "distance": 2.760, "atom1_id": "///Q/115/O", "atom2_id": "///Q/118/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5961, "atom1_serNum": 59414, "atom2_serNum": 59423, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///Q/116/O", "atom2_id": "///Q/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5962, "atom1_serNum": 59423, "atom2_serNum": 59430, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///Q/118/N", "atom2_id": "///Q/118/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5963, "atom1_serNum": 59426, "atom2_serNum": 62667, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///Q/118/O", "atom2_id": "///T/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5964, "atom1_serNum": 59479, "atom2_serNum": 59492, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///Q/124/O", "atom2_id": "///Q/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5965, "atom1_serNum": 59507, "atom2_serNum": 59527, "donAcc_type": "standard", "distance": 3.228, "atom1_id": "///R/6/O", "atom2_id": "///R/8/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5966, "atom1_serNum": 59522, "atom2_serNum": 59533, "donAcc_type": "acceptable", "distance": 2.883, "atom1_id": "///R/8/O", "atom2_id": "///R/9/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5967, "atom1_serNum": 59531, "atom2_serNum": 60243, "donAcc_type": "acceptable", "distance": 3.913, "atom1_id": "///R/9/O", "atom2_id": "///R/99/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5968, "atom1_serNum": 59533, "atom2_serNum": 59650, "donAcc_type": "acceptable", "distance": 3.053, "atom1_id": "///R/9/OG", "atom2_id": "///R/25/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5969, "atom1_serNum": 59534, "atom2_serNum": 59650, "donAcc_type": "standard", "distance": 3.882, "atom1_id": "///R/10/N", "atom2_id": "///R/25/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5970, "atom1_serNum": 59537, "atom2_serNum": 59643, "donAcc_type": "acceptable", "distance": 3.076, "atom1_id": "///R/10/O", "atom2_id": "///R/24/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5971, "atom1_serNum": 59549, "atom2_serNum": 60023, "donAcc_type": "questionable", "distance": 3.375, "atom1_id": "///R/11/NE2", "atom2_id": "///R/71/NH2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5972, "atom1_serNum": 59550, "atom2_serNum": 59635, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///R/12/N", "atom2_id": "///R/23/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5973, "atom1_serNum": 59553, "atom2_serNum": 59632, "donAcc_type": "standard", "distance": 2.469, "atom1_id": "///R/12/O", "atom2_id": "///R/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5974, "atom1_serNum": 59568, "atom2_serNum": 59623, "donAcc_type": "standard", "distance": 3.198, "atom1_id": "///R/14/N", "atom2_id": "///R/21/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5975, "atom1_serNum": 59571, "atom2_serNum": 59620, "donAcc_type": "standard", "distance": 3.187, "atom1_id": "///R/14/O", "atom2_id": "///R/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5976, "atom1_serNum": 59595, "atom2_serNum": 60463, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///R/17/O", "atom2_id": "///R/126/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5977, "atom1_serNum": 59595, "atom2_serNum": 60466, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///R/17/O", "atom2_id": "///R/126/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5978, "atom1_serNum": 59613, "atom2_serNum": 60034, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///R/20/N", "atom2_id": "///R/73/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5979, "atom1_serNum": 59616, "atom2_serNum": 60016, "donAcc_type": "questionable", "distance": 3.278, "atom1_id": "///R/20/O", "atom2_id": "///R/71/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5980, "atom1_serNum": 59616, "atom2_serNum": 60031, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///R/20/O", "atom2_id": "///R/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5981, "atom1_serNum": 59625, "atom2_serNum": 60016, "donAcc_type": "standard", "distance": 3.118, "atom1_id": "///R/22/N", "atom2_id": "///R/71/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5982, "atom1_serNum": 59628, "atom2_serNum": 60013, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///R/22/O", "atom2_id": "///R/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5983, "atom1_serNum": 59637, "atom2_serNum": 59998, "donAcc_type": "standard", "distance": 2.692, "atom1_id": "///R/24/N", "atom2_id": "///R/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5984, "atom1_serNum": 59640, "atom2_serNum": 59995, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///R/24/O", "atom2_id": "///R/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5985, "atom1_serNum": 59653, "atom2_serNum": 59982, "donAcc_type": "standard", "distance": 2.533, "atom1_id": "///R/26/N", "atom2_id": "///R/67/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5986, "atom1_serNum": 59656, "atom2_serNum": 59979, "donAcc_type": "standard", "distance": 3.095, "atom1_id": "///R/26/O", "atom2_id": "///R/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5987, "atom1_serNum": 59671, "atom2_serNum": 59971, "donAcc_type": "standard", "distance": 2.562, "atom1_id": "///R/27/NH1", "atom2_id": "///R/65/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5988, "atom1_serNum": 59677, "atom2_serNum": 59683, "donAcc_type": "standard", "distance": 2.720, "atom1_id": "///R/29/N", "atom2_id": "///R/29/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5989, "atom1_serNum": 59700, "atom2_serNum": 59751, "donAcc_type": "standard", "distance": 3.777, "atom1_id": "///R/32/O", "atom2_id": "///R/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5990, "atom1_serNum": 59708, "atom2_serNum": 60006, "donAcc_type": "standard", "distance": 3.697, "atom1_id": "///R/33/O", "atom2_id": "///R/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5991, "atom1_serNum": 59714, "atom2_serNum": 59736, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///R/34/N", "atom2_id": "///R/37/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5992, "atom1_serNum": 59717, "atom2_serNum": 59733, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///R/34/O", "atom2_id": "///R/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5993, "atom1_serNum": 59721, "atom2_serNum": 60009, "donAcc_type": "standard", "distance": 3.510, "atom1_id": "///R/35/N", "atom2_id": "///R/70/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5994, "atom1_serNum": 59724, "atom2_serNum": 62922, "donAcc_type": "standard", "distance": 3.763, "atom1_id": "///R/35/O", "atom2_id": "///U/7/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5995, "atom1_serNum": 59747, "atom2_serNum": 59759, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///R/38/O", "atom2_id": "///R/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5996, "atom1_serNum": 59754, "atom2_serNum": 59834, "donAcc_type": "standard", "distance": 2.698, "atom1_id": "///R/39/O", "atom2_id": "///R/48/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5997, "atom1_serNum": 59767, "atom2_serNum": 59834, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///R/40/OE2", "atom2_id": "///R/48/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5998, "atom1_serNum": 59821, "atom2_serNum": 59856, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///R/47/O", "atom2_id": "///R/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5999, "atom1_serNum": 59829, "atom2_serNum": 59864, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///R/48/O", "atom2_id": "///R/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6000, "atom1_serNum": 59838, "atom2_serNum": 59872, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///R/49/O", "atom2_id": "///R/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6001, "atom1_serNum": 59867, "atom2_serNum": 59888, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///R/52/O", "atom2_id": "///R/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6002, "atom1_serNum": 59867, "atom2_serNum": 59895, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///R/52/O", "atom2_id": "///R/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6003, "atom1_serNum": 59875, "atom2_serNum": 59903, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///R/53/O", "atom2_id": "///R/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6004, "atom1_serNum": 59884, "atom2_serNum": 59911, "donAcc_type": "standard", "distance": 3.201, "atom1_id": "///R/54/O", "atom2_id": "///R/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6005, "atom1_serNum": 59891, "atom2_serNum": 59919, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///R/55/O", "atom2_id": "///R/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6006, "atom1_serNum": 59891, "atom2_serNum": 59922, "donAcc_type": "questionable", "distance": 2.814, "atom1_id": "///R/55/O", "atom2_id": "///R/59/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6007, "atom1_serNum": 59914, "atom2_serNum": 59950, "donAcc_type": "standard", "distance": 3.816, "atom1_id": "///R/58/O", "atom2_id": "///R/62/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6008, "atom1_serNum": 59926, "atom2_serNum": 59963, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///R/60/O", "atom2_id": "///R/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6009, "atom1_serNum": 59932, "atom2_serNum": 59939, "donAcc_type": "standard", "distance": 2.496, "atom1_id": "///R/61/N", "atom2_id": "///R/61/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6010, "atom1_serNum": 59935, "atom2_serNum": 59963, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///R/61/O", "atom2_id": "///R/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6011, "atom1_serNum": 59944, "atom2_serNum": 60213, "donAcc_type": "acceptable", "distance": 2.389, "atom1_id": "///R/62/O", "atom2_id": "///R/96/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6012, "atom1_serNum": 59955, "atom2_serNum": 59975, "donAcc_type": "questionable", "distance": 2.834, "atom1_id": "///R/63/O", "atom2_id": "///R/66/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6013, "atom1_serNum": 59979, "atom2_serNum": 59985, "donAcc_type": "standard", "distance": 2.712, "atom1_id": "///R/67/N", "atom2_id": "///R/67/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6014, "atom1_serNum": 60043, "atom2_serNum": 60082, "donAcc_type": "standard", "distance": 2.660, "atom1_id": "///R/74/O", "atom2_id": "///R/80/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6015, "atom1_serNum": 60051, "atom2_serNum": 60074, "donAcc_type": "standard", "distance": 3.232, "atom1_id": "///R/76/O", "atom2_id": "///R/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6016, "atom1_serNum": 60055, "atom2_serNum": 60083, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///R/77/O", "atom2_id": "///R/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6017, "atom1_serNum": 60065, "atom2_serNum": 60091, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///R/78/O", "atom2_id": "///R/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6018, "atom1_serNum": 60072, "atom2_serNum": 60103, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///R/79/O", "atom2_id": "///R/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6019, "atom1_serNum": 60077, "atom2_serNum": 60108, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///R/80/O", "atom2_id": "///R/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6020, "atom1_serNum": 60086, "atom2_serNum": 60116, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///R/81/O", "atom2_id": "///R/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6021, "atom1_serNum": 60094, "atom2_serNum": 60127, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///R/82/O", "atom2_id": "///R/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6022, "atom1_serNum": 60106, "atom2_serNum": 60136, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///R/83/O", "atom2_id": "///R/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6023, "atom1_serNum": 60106, "atom2_serNum": 60141, "donAcc_type": "acceptable", "distance": 3.099, "atom1_id": "///R/83/O", "atom2_id": "///R/87/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6024, "atom1_serNum": 60111, "atom2_serNum": 60141, "donAcc_type": "acceptable", "distance": 2.841, "atom1_id": "///R/84/O", "atom2_id": "///R/87/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6025, "atom1_serNum": 60111, "atom2_serNum": 60142, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///R/84/O", "atom2_id": "///R/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6026, "atom1_serNum": 60130, "atom2_serNum": 60156, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///R/86/O", "atom2_id": "///R/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6027, "atom1_serNum": 60139, "atom2_serNum": 60165, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///R/87/O", "atom2_id": "///R/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6028, "atom1_serNum": 60145, "atom2_serNum": 60170, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///R/88/O", "atom2_id": "///R/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6029, "atom1_serNum": 60153, "atom2_serNum": 60178, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///R/89/O", "atom2_id": "///R/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6030, "atom1_serNum": 60159, "atom2_serNum": 60185, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///R/90/O", "atom2_id": "///R/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6031, "atom1_serNum": 60168, "atom2_serNum": 60190, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///R/91/O", "atom2_id": "///R/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6032, "atom1_serNum": 60173, "atom2_serNum": 60202, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///R/92/O", "atom2_id": "///R/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6033, "atom1_serNum": 60181, "atom2_serNum": 60214, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///R/93/O", "atom2_id": "///R/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6034, "atom1_serNum": 60188, "atom2_serNum": 60223, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///R/94/O", "atom2_id": "///R/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6035, "atom1_serNum": 60193, "atom2_serNum": 60232, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///R/95/O", "atom2_id": "///R/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6036, "atom1_serNum": 60205, "atom2_serNum": 60244, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///R/96/O", "atom2_id": "///R/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6037, "atom1_serNum": 60205, "atom2_serNum": 60247, "donAcc_type": "questionable", "distance": 2.733, "atom1_id": "///R/96/O", "atom2_id": "///R/100/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6038, "atom1_serNum": 60217, "atom2_serNum": 60267, "donAcc_type": "questionable", "distance": 2.902, "atom1_id": "///R/97/O", "atom2_id": "///R/102/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6039, "atom1_serNum": 60254, "atom2_serNum": 60278, "donAcc_type": "acceptable", "distance": 2.897, "atom1_id": "///R/101/O", "atom2_id": "///R/104/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6040, "atom1_serNum": 60254, "atom2_serNum": 60279, "donAcc_type": "standard", "distance": 3.854, "atom1_id": "///R/101/O", "atom2_id": "///R/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6041, "atom1_serNum": 60258, "atom2_serNum": 60259, "donAcc_type": "standard", "distance": 2.581, "atom1_id": "///R/101/OD2", "atom2_id": "///R/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6042, "atom1_serNum": 60258, "atom2_serNum": 60268, "donAcc_type": "standard", "distance": 2.657, "atom1_id": "///R/101/OD2", "atom2_id": "///R/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6043, "atom1_serNum": 60259, "atom2_serNum": 60266, "donAcc_type": "standard", "distance": 2.552, "atom1_id": "///R/102/N", "atom2_id": "///R/102/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6044, "atom1_serNum": 60262, "atom2_serNum": 60288, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///R/102/O", "atom2_id": "///R/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6045, "atom1_serNum": 60271, "atom2_serNum": 60297, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///R/103/O", "atom2_id": "///R/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6046, "atom1_serNum": 60276, "atom2_serNum": 60306, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///R/104/O", "atom2_id": "///R/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6047, "atom1_serNum": 60282, "atom2_serNum": 60314, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///R/105/O", "atom2_id": "///R/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6048, "atom1_serNum": 60291, "atom2_serNum": 60323, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///R/106/O", "atom2_id": "///R/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6049, "atom1_serNum": 60300, "atom2_serNum": 60331, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///R/107/O", "atom2_id": "///R/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6050, "atom1_serNum": 60309, "atom2_serNum": 60339, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///R/108/O", "atom2_id": "///R/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6051, "atom1_serNum": 60317, "atom2_serNum": 60347, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///R/109/O", "atom2_id": "///R/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6052, "atom1_serNum": 60326, "atom2_serNum": 60355, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///R/110/O", "atom2_id": "///R/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6053, "atom1_serNum": 60334, "atom2_serNum": 60364, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///R/111/O", "atom2_id": "///R/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6054, "atom1_serNum": 60342, "atom2_serNum": 60376, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///R/112/O", "atom2_id": "///R/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6055, "atom1_serNum": 60379, "atom2_serNum": 60402, "donAcc_type": "standard", "distance": 3.480, "atom1_id": "///R/116/O", "atom2_id": "///R/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6056, "atom1_serNum": 60382, "atom2_serNum": 60384, "donAcc_type": "standard", "distance": 3.100, "atom1_id": "///R/116/OD1", "atom2_id": "///R/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6057, "atom1_serNum": 60387, "atom2_serNum": 60410, "donAcc_type": "standard", "distance": 3.207, "atom1_id": "///R/117/O", "atom2_id": "///R/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6058, "atom1_serNum": 60387, "atom2_serNum": 60418, "donAcc_type": "standard", "distance": 3.533, "atom1_id": "///R/117/O", "atom2_id": "///R/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6059, "atom1_serNum": 60398, "atom2_serNum": 60421, "donAcc_type": "questionable", "distance": 2.980, "atom1_id": "///R/118/O", "atom2_id": "///R/121/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6060, "atom1_serNum": 60433, "atom2_serNum": 60445, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///R/123/O", "atom2_id": "///R/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6061, "atom1_serNum": 60437, "atom2_serNum": 60452, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///R/123/OD2", "atom2_id": "///R/125/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6062, "atom1_serNum": 60473, "atom2_serNum": 60480, "donAcc_type": "standard", "distance": 2.585, "atom1_id": "///R/128/N", "atom2_id": "///R/128/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6063, "atom1_serNum": 60496, "atom2_serNum": 60524, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///R/130/NZ", "atom2_id": "///R/134/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6064, "atom1_serNum": 60497, "atom2_serNum": 60535, "donAcc_type": "standard", "distance": 3.230, "atom1_id": "///R/131/N", "atom2_id": "///R/136/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6065, "atom1_serNum": 60500, "atom2_serNum": 60567, "donAcc_type": "standard", "distance": 2.777, "atom1_id": "///R/131/O", "atom2_id": "///R/140/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6066, "atom1_serNum": 60520, "atom2_serNum": 60568, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///R/133/O", "atom2_id": "///R/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6067, "atom1_serNum": 60535, "atom2_serNum": 60567, "donAcc_type": "standard", "distance": 3.838, "atom1_id": "///R/136/O", "atom2_id": "///R/140/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6068, "atom1_serNum": 60665, "atom2_serNum": 60692, "donAcc_type": "standard", "distance": 3.282, "atom1_id": "///S/6/O", "atom2_id": "///S/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6069, "atom1_serNum": 60672, "atom2_serNum": 60701, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///S/7/O", "atom2_id": "///S/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6070, "atom1_serNum": 60681, "atom2_serNum": 60710, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///S/8/O", "atom2_id": "///S/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6071, "atom1_serNum": 60688, "atom2_serNum": 60715, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///S/9/O", "atom2_id": "///S/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6072, "atom1_serNum": 60695, "atom2_serNum": 60720, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///S/10/O", "atom2_id": "///S/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6073, "atom1_serNum": 60704, "atom2_serNum": 60731, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///S/11/O", "atom2_id": "///S/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6074, "atom1_serNum": 60713, "atom2_serNum": 60738, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///S/12/O", "atom2_id": "///S/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6075, "atom1_serNum": 60718, "atom2_serNum": 60746, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///S/13/O", "atom2_id": "///S/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6076, "atom1_serNum": 60723, "atom2_serNum": 60754, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///S/14/O", "atom2_id": "///S/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6077, "atom1_serNum": 60734, "atom2_serNum": 60763, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///S/15/O", "atom2_id": "///S/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6078, "atom1_serNum": 60741, "atom2_serNum": 60772, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///S/16/O", "atom2_id": "///S/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6079, "atom1_serNum": 60762, "atom2_serNum": 61186, "donAcc_type": "questionable", "distance": 2.866, "atom1_id": "///S/18/OE2", "atom2_id": "///S/70/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6080, "atom1_serNum": 60799, "atom2_serNum": 60801, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///S/22/O", "atom2_id": "///S/22/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6081, "atom1_serNum": 60812, "atom2_serNum": 73820, "donAcc_type": "standard", "distance": 2.396, "atom1_id": "///S/23/NH1", "atom2_id": "///h/149/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6082, "atom1_serNum": 60837, "atom2_serNum": 60868, "donAcc_type": "acceptable", "distance": 3.047, "atom1_id": "///S/27/O", "atom2_id": "///S/30/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6083, "atom1_serNum": 60840, "atom2_serNum": 60842, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///S/27/OD1", "atom2_id": "///S/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6084, "atom1_serNum": 60845, "atom2_serNum": 60876, "donAcc_type": "questionable", "distance": 2.613, "atom1_id": "///S/28/O", "atom2_id": "///S/31/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6085, "atom1_serNum": 60845, "atom2_serNum": 60878, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///S/28/O", "atom2_id": "///S/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6086, "atom1_serNum": 60856, "atom2_serNum": 60887, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///S/29/O", "atom2_id": "///S/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6087, "atom1_serNum": 60859, "atom2_serNum": 60886, "donAcc_type": "acceptable", "distance": 3.501, "atom1_id": "///S/29/ND1", "atom2_id": "///S/32/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6088, "atom1_serNum": 60866, "atom2_serNum": 60898, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///S/30/O", "atom2_id": "///S/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6089, "atom1_serNum": 60873, "atom2_serNum": 60905, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///S/31/O", "atom2_id": "///S/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6090, "atom1_serNum": 60876, "atom2_serNum": 60878, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///S/31/OD1", "atom2_id": "///S/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6091, "atom1_serNum": 60881, "atom2_serNum": 60911, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///S/32/O", "atom2_id": "///S/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6092, "atom1_serNum": 60890, "atom2_serNum": 60918, "donAcc_type": "questionable", "distance": 3.176, "atom1_id": "///S/33/O", "atom2_id": "///S/36/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6093, "atom1_serNum": 60890, "atom2_serNum": 60920, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///S/33/O", "atom2_id": "///S/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6094, "atom1_serNum": 60901, "atom2_serNum": 60929, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///S/34/O", "atom2_id": "///S/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6095, "atom1_serNum": 60908, "atom2_serNum": 60937, "donAcc_type": "standard", "distance": 3.064, "atom1_id": "///S/35/O", "atom2_id": "///S/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6096, "atom1_serNum": 60927, "atom2_serNum": 73829, "donAcc_type": "standard", "distance": 2.420, "atom1_id": "///S/37/OE1", "atom2_id": "///h/150/NE1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6097, "atom1_serNum": 60940, "atom2_serNum": 60950, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///S/39/O", "atom2_id": "///S/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6098, "atom1_serNum": 60970, "atom2_serNum": 60980, "donAcc_type": "acceptable", "distance": 3.569, "atom1_id": "///S/43/OG", "atom2_id": "///S/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6099, "atom1_serNum": 60974, "atom2_serNum": 61008, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///S/44/O", "atom2_id": "///S/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6100, "atom1_serNum": 60979, "atom2_serNum": 61007, "donAcc_type": "questionable", "distance": 2.977, "atom1_id": "///S/44/NZ", "atom2_id": "///S/47/NH2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6101, "atom1_serNum": 60983, "atom2_serNum": 61016, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///S/45/O", "atom2_id": "///S/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6102, "atom1_serNum": 60992, "atom2_serNum": 61025, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///S/46/O", "atom2_id": "///S/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6103, "atom1_serNum": 61000, "atom2_serNum": 61033, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///S/47/O", "atom2_id": "///S/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6104, "atom1_serNum": 61011, "atom2_serNum": 61038, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///S/48/O", "atom2_id": "///S/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6105, "atom1_serNum": 61019, "atom2_serNum": 61042, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///S/49/O", "atom2_id": "///S/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6106, "atom1_serNum": 61028, "atom2_serNum": 61054, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///S/50/O", "atom2_id": "///S/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6107, "atom1_serNum": 61036, "atom2_serNum": 61061, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///S/51/O", "atom2_id": "///S/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6108, "atom1_serNum": 61041, "atom2_serNum": 61066, "donAcc_type": "acceptable", "distance": 2.720, "atom1_id": "///S/52/O", "atom2_id": "///S/55/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6109, "atom1_serNum": 61041, "atom2_serNum": 61068, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///S/52/O", "atom2_id": "///S/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6110, "atom1_serNum": 61045, "atom2_serNum": 61078, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///S/53/O", "atom2_id": "///S/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6111, "atom1_serNum": 61057, "atom2_serNum": 61086, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///S/54/O", "atom2_id": "///S/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6112, "atom1_serNum": 61064, "atom2_serNum": 61094, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///S/55/O", "atom2_id": "///S/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6113, "atom1_serNum": 61071, "atom2_serNum": 61103, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///S/56/O", "atom2_id": "///S/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6114, "atom1_serNum": 61081, "atom2_serNum": 61114, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///S/57/O", "atom2_id": "///S/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6115, "atom1_serNum": 61089, "atom2_serNum": 61122, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///S/58/O", "atom2_id": "///S/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6116, "atom1_serNum": 61097, "atom2_serNum": 61131, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///S/59/O", "atom2_id": "///S/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6117, "atom1_serNum": 61106, "atom2_serNum": 61142, "donAcc_type": "standard", "distance": 3.438, "atom1_id": "///S/60/O", "atom2_id": "///S/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6118, "atom1_serNum": 61129, "atom2_serNum": 74839, "donAcc_type": "questionable", "distance": 3.277, "atom1_id": "///S/62/OE1", "atom2_id": "///h/282/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6119, "atom1_serNum": 61178, "atom2_serNum": 61189, "donAcc_type": "standard", "distance": 3.228, "atom1_id": "///S/69/O", "atom2_id": "///S/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6120, "atom1_serNum": 61192, "atom2_serNum": 61222, "donAcc_type": "standard", "distance": 2.539, "atom1_id": "///S/71/O", "atom2_id": "///S/74/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6121, "atom1_serNum": 61209, "atom2_serNum": 61268, "donAcc_type": "questionable", "distance": 2.733, "atom1_id": "///S/73/O", "atom2_id": "///S/79/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6122, "atom1_serNum": 61226, "atom2_serNum": 61250, "donAcc_type": "standard", "distance": 2.667, "atom1_id": "///S/75/O", "atom2_id": "///S/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6123, "atom1_serNum": 61226, "atom2_serNum": 61261, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///S/75/O", "atom2_id": "///S/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6124, "atom1_serNum": 61230, "atom2_serNum": 61259, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///S/75/OE1", "atom2_id": "///S/78/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6125, "atom1_serNum": 61235, "atom2_serNum": 61270, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///S/76/O", "atom2_id": "///S/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6126, "atom1_serNum": 61244, "atom2_serNum": 61281, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///S/77/O", "atom2_id": "///S/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6127, "atom1_serNum": 61253, "atom2_serNum": 61292, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///S/78/O", "atom2_id": "///S/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6128, "atom1_serNum": 61264, "atom2_serNum": 61300, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///S/79/O", "atom2_id": "///S/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6129, "atom1_serNum": 61273, "atom2_serNum": 61308, "donAcc_type": "standard", "distance": 2.674, "atom1_id": "///S/80/O", "atom2_id": "///S/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6130, "atom1_serNum": 61280, "atom2_serNum": 61319, "donAcc_type": "acceptable", "distance": 3.654, "atom1_id": "///S/80/NH2", "atom2_id": "///S/84/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6131, "atom1_serNum": 61284, "atom2_serNum": 61311, "donAcc_type": "questionable", "distance": 3.146, "atom1_id": "///S/81/O", "atom2_id": "///S/84/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6132, "atom1_serNum": 61355, "atom2_serNum": 61369, "donAcc_type": "acceptable", "distance": 3.054, "atom1_id": "///S/89/OG", "atom2_id": "///S/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6133, "atom1_serNum": 61364, "atom2_serNum": 61377, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///S/91/O", "atom2_id": "///S/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6134, "atom1_serNum": 61380, "atom2_serNum": 61566, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///S/93/O", "atom2_id": "///S/116/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6135, "atom1_serNum": 61403, "atom2_serNum": 61582, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///S/96/N", "atom2_id": "///S/118/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6136, "atom1_serNum": 61406, "atom2_serNum": 61582, "donAcc_type": "questionable", "distance": 3.055, "atom1_id": "///S/96/O", "atom2_id": "///S/118/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6137, "atom1_serNum": 61423, "atom2_serNum": 61591, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///S/98/O", "atom2_id": "///S/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6138, "atom1_serNum": 61427, "atom2_serNum": 61433, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///S/99/N", "atom2_id": "///S/99/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6139, "atom1_serNum": 61430, "atom2_serNum": 61457, "donAcc_type": "standard", "distance": 3.384, "atom1_id": "///S/99/O", "atom2_id": "///S/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6140, "atom1_serNum": 61433, "atom2_serNum": 61450, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///S/99/OD1", "atom2_id": "///S/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6141, "atom1_serNum": 61433, "atom2_serNum": 61455, "donAcc_type": "acceptable", "distance": 2.565, "atom1_id": "///S/99/OD1", "atom2_id": "///S/102/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6142, "atom1_serNum": 61438, "atom2_serNum": 61466, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///S/100/O", "atom2_id": "///S/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6143, "atom1_serNum": 61445, "atom2_serNum": 61475, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///S/101/O", "atom2_id": "///S/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6144, "atom1_serNum": 61453, "atom2_serNum": 61483, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///S/102/O", "atom2_id": "///S/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6145, "atom1_serNum": 61460, "atom2_serNum": 61491, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///S/103/O", "atom2_id": "///S/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6146, "atom1_serNum": 61465, "atom2_serNum": 61499, "donAcc_type": "questionable", "distance": 3.375, "atom1_id": "///S/103/NZ", "atom2_id": "///S/107/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6147, "atom1_serNum": 61486, "atom2_serNum": 61508, "donAcc_type": "standard", "distance": 3.384, "atom1_id": "///S/106/O", "atom2_id": "///S/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6148, "atom1_serNum": 61486, "atom2_serNum": 61527, "donAcc_type": "questionable", "distance": 2.963, "atom1_id": "///S/106/O", "atom2_id": "///S/111/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6149, "atom1_serNum": 61516, "atom2_serNum": 61522, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///S/110/N", "atom2_id": "///S/110/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6150, "atom1_serNum": 61575, "atom2_serNum": 61582, "donAcc_type": "standard", "distance": 2.668, "atom1_id": "///S/118/N", "atom2_id": "///S/118/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6151, "atom1_serNum": 61601, "atom2_serNum": 61614, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///S/121/O", "atom2_id": "///S/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6152, "atom1_serNum": 61617, "atom2_serNum": 61628, "donAcc_type": "standard", "distance": 3.230, "atom1_id": "///S/123/O", "atom2_id": "///S/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6153, "atom1_serNum": 61671, "atom2_serNum": 61682, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///S/130/O", "atom2_id": "///S/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6154, "atom1_serNum": 61671, "atom2_serNum": 61691, "donAcc_type": "standard", "distance": 2.404, "atom1_id": "///S/130/O", "atom2_id": "///S/132/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6155, "atom1_serNum": 61673, "atom2_serNum": 61691, "donAcc_type": "acceptable", "distance": 3.175, "atom1_id": "///S/130/OG1", "atom2_id": "///S/132/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6156, "atom1_serNum": 61701, "atom2_serNum": 61703, "donAcc_type": "acceptable", "distance": 2.498, "atom1_id": "///T/2/O", "atom2_id": "///T/2/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6157, "atom1_serNum": 61719, "atom2_serNum": 68660, "donAcc_type": "standard", "distance": 3.894, "atom1_id": "///T/5/N", "atom2_id": "///a/50/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6158, "atom1_serNum": 61763, "atom2_serNum": 62142, "donAcc_type": "standard", "distance": 3.627, "atom1_id": "///T/10/N", "atom2_id": "///T/57/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6159, "atom1_serNum": 61775, "atom2_serNum": 61863, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///T/11/O", "atom2_id": "///T/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6160, "atom1_serNum": 61790, "atom2_serNum": 61850, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///T/13/N", "atom2_id": "///T/20/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6161, "atom1_serNum": 61793, "atom2_serNum": 61809, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///T/13/O", "atom2_id": "///T/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6162, "atom1_serNum": 61793, "atom2_serNum": 61847, "donAcc_type": "standard", "distance": 3.487, "atom1_id": "///T/13/O", "atom2_id": "///T/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6163, "atom1_serNum": 61809, "atom2_serNum": 61835, "donAcc_type": "standard", "distance": 3.411, "atom1_id": "///T/15/N", "atom2_id": "///T/18/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6164, "atom1_serNum": 61812, "atom2_serNum": 61832, "donAcc_type": "standard", "distance": 3.026, "atom1_id": "///T/15/O", "atom2_id": "///T/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6165, "atom1_serNum": 61835, "atom2_serNum": 61847, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///T/18/O", "atom2_id": "///T/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6166, "atom1_serNum": 61855, "atom2_serNum": 61861, "donAcc_type": "standard", "distance": 2.693, "atom1_id": "///T/21/N", "atom2_id": "///T/21/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6167, "atom1_serNum": 61866, "atom2_serNum": 62139, "donAcc_type": "standard", "distance": 3.852, "atom1_id": "///T/22/O", "atom2_id": "///T/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6168, "atom1_serNum": 61870, "atom2_serNum": 62130, "donAcc_type": "standard", "distance": 3.245, "atom1_id": "///T/23/O", "atom2_id": "///T/55/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6169, "atom1_serNum": 61876, "atom2_serNum": 68629, "donAcc_type": "standard", "distance": 3.677, "atom1_id": "///T/23/NH1", "atom2_id": "///a/46/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6170, "atom1_serNum": 61881, "atom2_serNum": 62134, "donAcc_type": "standard", "distance": 3.910, "atom1_id": "///T/24/O", "atom2_id": "///T/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6171, "atom1_serNum": 61892, "atom2_serNum": 61911, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///T/25/O", "atom2_id": "///T/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6172, "atom1_serNum": 61892, "atom2_serNum": 61922, "donAcc_type": "standard", "distance": 2.696, "atom1_id": "///T/25/O", "atom2_id": "///T/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6173, "atom1_serNum": 61898, "atom2_serNum": 62117, "donAcc_type": "standard", "distance": 3.728, "atom1_id": "///T/26/N", "atom2_id": "///T/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6174, "atom1_serNum": 61901, "atom2_serNum": 61927, "donAcc_type": "standard", "distance": 3.385, "atom1_id": "///T/26/O", "atom2_id": "///T/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6175, "atom1_serNum": 61914, "atom2_serNum": 61940, "donAcc_type": "acceptable", "distance": 2.575, "atom1_id": "///T/28/O", "atom2_id": "///T/31/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6176, "atom1_serNum": 61925, "atom2_serNum": 61942, "donAcc_type": "standard", "distance": 3.349, "atom1_id": "///T/29/O", "atom2_id": "///T/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6177, "atom1_serNum": 61930, "atom2_serNum": 61947, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///T/30/O", "atom2_id": "///T/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6178, "atom1_serNum": 61950, "atom2_serNum": 61964, "donAcc_type": "standard", "distance": 3.043, "atom1_id": "///T/33/O", "atom2_id": "///T/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6179, "atom1_serNum": 61950, "atom2_serNum": 61968, "donAcc_type": "standard", "distance": 3.330, "atom1_id": "///T/33/O", "atom2_id": "///T/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6180, "atom1_serNum": 61958, "atom2_serNum": 62503, "donAcc_type": "standard", "distance": 3.041, "atom1_id": "///T/34/O", "atom2_id": "///T/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6181, "atom1_serNum": 61963, "atom2_serNum": 62534, "donAcc_type": "standard", "distance": 3.260, "atom1_id": "///T/34/NZ", "atom2_id": "///T/104/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6182, "atom1_serNum": 61967, "atom2_serNum": 62487, "donAcc_type": "standard", "distance": 2.458, "atom1_id": "///T/35/O", "atom2_id": "///T/97/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6183, "atom1_serNum": 61978, "atom2_serNum": 62013, "donAcc_type": "standard", "distance": 2.665, "atom1_id": "///T/37/O", "atom2_id": "///T/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6184, "atom1_serNum": 61982, "atom2_serNum": 62024, "donAcc_type": "acceptable", "distance": 2.418, "atom1_id": "///T/38/O", "atom2_id": "///T/42/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6185, "atom1_serNum": 61993, "atom2_serNum": 62028, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///T/39/O", "atom2_id": "///T/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6186, "atom1_serNum": 62004, "atom2_serNum": 62035, "donAcc_type": "standard", "distance": 3.472, "atom1_id": "///T/40/O", "atom2_id": "///T/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6187, "atom1_serNum": 62012, "atom2_serNum": 62253, "donAcc_type": "acceptable", "distance": 3.718, "atom1_id": "///T/40/OH", "atom2_id": "///T/71/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6188, "atom1_serNum": 62021, "atom2_serNum": 62042, "donAcc_type": "standard", "distance": 2.711, "atom1_id": "///T/42/O", "atom2_id": "///T/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6189, "atom1_serNum": 62021, "atom2_serNum": 62050, "donAcc_type": "standard", "distance": 3.264, "atom1_id": "///T/42/O", "atom2_id": "///T/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6190, "atom1_serNum": 62031, "atom2_serNum": 62050, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///T/43/O", "atom2_id": "///T/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6191, "atom1_serNum": 62031, "atom2_serNum": 62061, "donAcc_type": "standard", "distance": 3.475, "atom1_id": "///T/43/O", "atom2_id": "///T/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6192, "atom1_serNum": 62059, "atom2_serNum": 63145, "donAcc_type": "standard", "distance": 3.888, "atom1_id": "///T/46/NH1", "atom2_id": "///U/35/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6193, "atom1_serNum": 62073, "atom2_serNum": 62083, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///T/48/O", "atom2_id": "///T/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6194, "atom1_serNum": 62075, "atom2_serNum": 62219, "donAcc_type": "questionable", "distance": 3.050, "atom1_id": "///T/49/N", "atom2_id": "///T/66/NH2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6195, "atom1_serNum": 62122, "atom2_serNum": 62150, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///T/54/NZ", "atom2_id": "///T/58/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6196, "atom1_serNum": 62133, "atom2_serNum": 68908, "donAcc_type": "questionable", "distance": 3.409, "atom1_id": "///T/55/NH2", "atom2_id": "///a/80/NE", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6197, "atom1_serNum": 62163, "atom2_serNum": 62193, "donAcc_type": "standard", "distance": 3.597, "atom1_id": "///T/60/O", "atom2_id": "///T/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6198, "atom1_serNum": 62165, "atom2_serNum": 62182, "donAcc_type": "acceptable", "distance": 2.308, "atom1_id": "///T/60/OG1", "atom2_id": "///T/62/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6199, "atom1_serNum": 62167, "atom2_serNum": 62174, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///T/61/N", "atom2_id": "///T/61/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6200, "atom1_serNum": 62170, "atom2_serNum": 62200, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///T/61/O", "atom2_id": "///T/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6201, "atom1_serNum": 62176, "atom2_serNum": 62182, "donAcc_type": "standard", "distance": 2.569, "atom1_id": "///T/62/N", "atom2_id": "///T/62/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6202, "atom1_serNum": 62179, "atom2_serNum": 62209, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///T/62/O", "atom2_id": "///T/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6203, "atom1_serNum": 62182, "atom2_serNum": 62184, "donAcc_type": "standard", "distance": 2.605, "atom1_id": "///T/62/OD1", "atom2_id": "///T/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6204, "atom1_serNum": 62187, "atom2_serNum": 62220, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///T/63/O", "atom2_id": "///T/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6205, "atom1_serNum": 62196, "atom2_serNum": 62227, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///T/64/O", "atom2_id": "///T/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6206, "atom1_serNum": 62203, "atom2_serNum": 62235, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///T/65/O", "atom2_id": "///T/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6207, "atom1_serNum": 62212, "atom2_serNum": 62240, "donAcc_type": "acceptable", "distance": 2.575, "atom1_id": "///T/66/O", "atom2_id": "///T/69/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6208, "atom1_serNum": 62212, "atom2_serNum": 62242, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///T/66/O", "atom2_id": "///T/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6209, "atom1_serNum": 62223, "atom2_serNum": 62250, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///T/67/O", "atom2_id": "///T/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6210, "atom1_serNum": 62230, "atom2_serNum": 62258, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///T/68/O", "atom2_id": "///T/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6211, "atom1_serNum": 62238, "atom2_serNum": 62267, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///T/69/O", "atom2_id": "///T/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6212, "atom1_serNum": 62238, "atom2_serNum": 62274, "donAcc_type": "standard", "distance": 3.083, "atom1_id": "///T/69/O", "atom2_id": "///T/73/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6213, "atom1_serNum": 62245, "atom2_serNum": 62267, "donAcc_type": "standard", "distance": 3.103, "atom1_id": "///T/70/O", "atom2_id": "///T/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6214, "atom1_serNum": 62278, "atom2_serNum": 62323, "donAcc_type": "standard", "distance": 3.123, "atom1_id": "///T/74/O", "atom2_id": "///T/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6215, "atom1_serNum": 62341, "atom2_serNum": 62371, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///T/81/O", "atom2_id": "///T/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6216, "atom1_serNum": 62344, "atom2_serNum": 62346, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///T/81/OD1", "atom2_id": "///T/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6217, "atom1_serNum": 62349, "atom2_serNum": 62406, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///T/82/O", "atom2_id": "///T/87/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6218, "atom1_serNum": 62374, "atom2_serNum": 62406, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///T/84/O", "atom2_id": "///T/87/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6219, "atom1_serNum": 62379, "atom2_serNum": 62486, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///T/85/N", "atom2_id": "///T/97/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6220, "atom1_serNum": 62396, "atom2_serNum": 62422, "donAcc_type": "standard", "distance": 3.927, "atom1_id": "///T/86/NH1", "atom2_id": "///T/89/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6221, "atom1_serNum": 62396, "atom2_serNum": 62588, "donAcc_type": "standard", "distance": 3.792, "atom1_id": "///T/86/NH1", "atom2_id": "///T/110/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6222, "atom1_serNum": 62419, "atom2_serNum": 62448, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///T/89/O", "atom2_id": "///T/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6223, "atom1_serNum": 62440, "atom2_serNum": 62446, "donAcc_type": "standard", "distance": 2.704, "atom1_id": "///T/92/N", "atom2_id": "///T/92/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6224, "atom1_serNum": 62476, "atom2_serNum": 62478, "donAcc_type": "acceptable", "distance": 2.921, "atom1_id": "///T/96/O", "atom2_id": "///T/96/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6225, "atom1_serNum": 62498, "atom2_serNum": 62520, "donAcc_type": "standard", "distance": 2.583, "atom1_id": "///T/99/O", "atom2_id": "///T/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6226, "atom1_serNum": 62506, "atom2_serNum": 62528, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///T/100/O", "atom2_id": "///T/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6227, "atom1_serNum": 62511, "atom2_serNum": 62536, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///T/101/O", "atom2_id": "///T/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6228, "atom1_serNum": 62514, "atom2_serNum": 62516, "donAcc_type": "standard", "distance": 2.448, "atom1_id": "///T/101/OD1", "atom2_id": "///T/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6229, "atom1_serNum": 62519, "atom2_serNum": 62544, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///T/102/O", "atom2_id": "///T/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6230, "atom1_serNum": 62523, "atom2_serNum": 62553, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///T/103/O", "atom2_id": "///T/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6231, "atom1_serNum": 62531, "atom2_serNum": 62561, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///T/104/O", "atom2_id": "///T/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6232, "atom1_serNum": 62534, "atom2_serNum": 62570, "donAcc_type": "standard", "distance": 3.633, "atom1_id": "///T/104/OD1", "atom2_id": "///T/108/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6233, "atom1_serNum": 62539, "atom2_serNum": 62572, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///T/105/O", "atom2_id": "///T/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6234, "atom1_serNum": 62547, "atom2_serNum": 62581, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///T/106/O", "atom2_id": "///T/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6235, "atom1_serNum": 62556, "atom2_serNum": 62589, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///T/107/O", "atom2_id": "///T/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6236, "atom1_serNum": 62564, "atom2_serNum": 62597, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///T/108/O", "atom2_id": "///T/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6237, "atom1_serNum": 62575, "atom2_serNum": 62606, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///T/109/O", "atom2_id": "///T/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6238, "atom1_serNum": 62584, "atom2_serNum": 62617, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///T/110/O", "atom2_id": "///T/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6239, "atom1_serNum": 62587, "atom2_serNum": 62613, "donAcc_type": "standard", "distance": 3.755, "atom1_id": "///T/110/OD1", "atom2_id": "///T/113/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6240, "atom1_serNum": 62592, "atom2_serNum": 62625, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///T/111/O", "atom2_id": "///T/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6241, "atom1_serNum": 62600, "atom2_serNum": 62634, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///T/112/O", "atom2_id": "///T/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6242, "atom1_serNum": 62609, "atom2_serNum": 62643, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///T/113/O", "atom2_id": "///T/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6243, "atom1_serNum": 62620, "atom2_serNum": 62651, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///T/114/O", "atom2_id": "///T/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6244, "atom1_serNum": 62665, "atom2_serNum": 62692, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///T/119/O", "atom2_id": "///T/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6245, "atom1_serNum": 62670, "atom2_serNum": 62700, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///T/120/O", "atom2_id": "///T/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6246, "atom1_serNum": 62680, "atom2_serNum": 62711, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///T/121/O", "atom2_id": "///T/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6247, "atom1_serNum": 62691, "atom2_serNum": 62721, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///T/122/O", "atom2_id": "///T/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6248, "atom1_serNum": 62695, "atom2_serNum": 62732, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///T/123/O", "atom2_id": "///T/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6249, "atom1_serNum": 62703, "atom2_serNum": 62746, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///T/124/O", "atom2_id": "///T/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6250, "atom1_serNum": 62703, "atom2_serNum": 62750, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///T/124/O", "atom2_id": "///T/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6251, "atom1_serNum": 62735, "atom2_serNum": 62880, "donAcc_type": "standard", "distance": 2.576, "atom1_id": "///T/127/O", "atom2_id": "///T/144/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6252, "atom1_serNum": 62776, "atom2_serNum": 62798, "donAcc_type": "standard", "distance": 3.607, "atom1_id": "///T/132/N", "atom2_id": "///T/134/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6253, "atom1_serNum": 62813, "atom2_serNum": 62853, "donAcc_type": "standard", "distance": 3.363, "atom1_id": "///T/136/O", "atom2_id": "///T/141/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6254, "atom1_serNum": 62820, "atom2_serNum": 62853, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///T/137/O", "atom2_id": "///T/141/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6255, "atom1_serNum": 62820, "atom2_serNum": 62854, "donAcc_type": "standard", "distance": 2.605, "atom1_id": "///T/137/O", "atom2_id": "///T/141/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6256, "atom1_serNum": 62869, "atom2_serNum": 62881, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///T/143/O", "atom2_id": "///T/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6257, "atom1_serNum": 62873, "atom2_serNum": 62886, "donAcc_type": "acceptable", "distance": 2.448, "atom1_id": "///T/144/O", "atom2_id": "///T/145/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6258, "atom1_serNum": 62896, "atom2_serNum": 63907, "donAcc_type": "questionable", "distance": 3.267, "atom1_id": "///U/4/O", "atom2_id": "///U/132/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6259, "atom1_serNum": 62903, "atom2_serNum": 62923, "donAcc_type": "standard", "distance": 3.418, "atom1_id": "///U/5/O", "atom2_id": "///U/8/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6260, "atom1_serNum": 62941, "atom2_serNum": 62973, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///U/10/O", "atom2_id": "///U/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6261, "atom1_serNum": 62949, "atom2_serNum": 62984, "donAcc_type": "standard", "distance": 3.709, "atom1_id": "///U/11/O", "atom2_id": "///U/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6262, "atom1_serNum": 62967, "atom2_serNum": 63002, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///U/13/O", "atom2_id": "///U/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6263, "atom1_serNum": 62976, "atom2_serNum": 63007, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///U/14/O", "atom2_id": "///U/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6264, "atom1_serNum": 62987, "atom2_serNum": 63015, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///U/15/O", "atom2_id": "///U/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6265, "atom1_serNum": 62994, "atom2_serNum": 63020, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///U/16/O", "atom2_id": "///U/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6266, "atom1_serNum": 63005, "atom2_serNum": 63025, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///U/17/O", "atom2_id": "///U/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6267, "atom1_serNum": 63010, "atom2_serNum": 63036, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///U/18/O", "atom2_id": "///U/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6268, "atom1_serNum": 63018, "atom2_serNum": 63044, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///U/19/O", "atom2_id": "///U/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6269, "atom1_serNum": 63023, "atom2_serNum": 63053, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///U/20/O", "atom2_id": "///U/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6270, "atom1_serNum": 63028, "atom2_serNum": 63062, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///U/21/O", "atom2_id": "///U/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6271, "atom1_serNum": 63039, "atom2_serNum": 63068, "donAcc_type": "standard", "distance": 2.458, "atom1_id": "///U/22/O", "atom2_id": "///U/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6272, "atom1_serNum": 63052, "atom2_serNum": 63278, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///U/23/NZ", "atom2_id": "///U/51/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6273, "atom1_serNum": 63065, "atom2_serNum": 63080, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///U/25/O", "atom2_id": "///U/27/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6274, "atom1_serNum": 63124, "atom2_serNum": 63150, "donAcc_type": "standard", "distance": 3.269, "atom1_id": "///U/33/O", "atom2_id": "///U/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6275, "atom1_serNum": 63138, "atom2_serNum": 63288, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///U/34/O", "atom2_id": "///U/52/NE1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6276, "atom1_serNum": 63201, "atom2_serNum": 63606, "donAcc_type": "acceptable", "distance": 2.997, "atom1_id": "///U/42/ND1", "atom2_id": "///U/93/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6277, "atom1_serNum": 63283, "atom2_serNum": 63324, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///U/52/O", "atom2_id": "///U/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6278, "atom1_serNum": 63297, "atom2_serNum": 63335, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///U/53/O", "atom2_id": "///U/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6279, "atom1_serNum": 63308, "atom2_serNum": 63340, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///U/54/O", "atom2_id": "///U/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6280, "atom1_serNum": 63320, "atom2_serNum": 63345, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///U/55/O", "atom2_id": "///U/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6281, "atom1_serNum": 63327, "atom2_serNum": 63350, "donAcc_type": "acceptable", "distance": 2.560, "atom1_id": "///U/56/O", "atom2_id": "///U/59/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6282, "atom1_serNum": 63327, "atom2_serNum": 63351, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///U/56/O", "atom2_id": "///U/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6283, "atom1_serNum": 63327, "atom2_serNum": 63356, "donAcc_type": "acceptable", "distance": 3.059, "atom1_id": "///U/56/O", "atom2_id": "///U/60/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6284, "atom1_serNum": 63338, "atom2_serNum": 63356, "donAcc_type": "acceptable", "distance": 2.528, "atom1_id": "///U/57/O", "atom2_id": "///U/60/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6285, "atom1_serNum": 63338, "atom2_serNum": 63358, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///U/57/O", "atom2_id": "///U/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6286, "atom1_serNum": 63343, "atom2_serNum": 63363, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///U/58/O", "atom2_id": "///U/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6287, "atom1_serNum": 63348, "atom2_serNum": 63374, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///U/59/O", "atom2_id": "///U/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6288, "atom1_serNum": 63354, "atom2_serNum": 63384, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///U/60/O", "atom2_id": "///U/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6289, "atom1_serNum": 63361, "atom2_serNum": 63392, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///U/61/O", "atom2_id": "///U/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6290, "atom1_serNum": 63366, "atom2_serNum": 63404, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///U/62/O", "atom2_id": "///U/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6291, "atom1_serNum": 63377, "atom2_serNum": 63412, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///U/63/O", "atom2_id": "///U/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6292, "atom1_serNum": 63443, "atom2_serNum": 63465, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///U/72/O", "atom2_id": "///U/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6293, "atom1_serNum": 63443, "atom2_serNum": 63470, "donAcc_type": "acceptable", "distance": 2.425, "atom1_id": "///U/72/O", "atom2_id": "///U/76/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6294, "atom1_serNum": 63450, "atom2_serNum": 63472, "donAcc_type": "standard", "distance": 2.809, "atom1_id": "///U/73/O", "atom2_id": "///U/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6295, "atom1_serNum": 63450, "atom2_serNum": 63617, "donAcc_type": "standard", "distance": 2.630, "atom1_id": "///U/73/O", "atom2_id": "///U/94/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6296, "atom1_serNum": 63454, "atom2_serNum": 63481, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///U/74/O", "atom2_id": "///U/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6297, "atom1_serNum": 63460, "atom2_serNum": 63489, "donAcc_type": "standard", "distance": 3.285, "atom1_id": "///U/75/O", "atom2_id": "///U/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6298, "atom1_serNum": 63468, "atom2_serNum": 63618, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///U/76/O", "atom2_id": "///U/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6299, "atom1_serNum": 63505, "atom2_serNum": 63604, "donAcc_type": "standard", "distance": 3.904, "atom1_id": "///U/81/N", "atom2_id": "///U/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6300, "atom1_serNum": 63508, "atom2_serNum": 63601, "donAcc_type": "standard", "distance": 3.718, "atom1_id": "///U/81/O", "atom2_id": "///U/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6301, "atom1_serNum": 63520, "atom2_serNum": 63583, "donAcc_type": "standard", "distance": 3.078, "atom1_id": "///U/83/N", "atom2_id": "///U/91/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6302, "atom1_serNum": 63523, "atom2_serNum": 63540, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///U/83/O", "atom2_id": "///U/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6303, "atom1_serNum": 63523, "atom2_serNum": 63580, "donAcc_type": "standard", "distance": 3.687, "atom1_id": "///U/83/O", "atom2_id": "///U/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6304, "atom1_serNum": 63527, "atom2_serNum": 63547, "donAcc_type": "standard", "distance": 2.832, "atom1_id": "///U/83/OE1", "atom2_id": "///U/85/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6305, "atom1_serNum": 63547, "atom2_serNum": 63570, "donAcc_type": "standard", "distance": 3.738, "atom1_id": "///U/85/ND2", "atom2_id": "///U/89/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6306, "atom1_serNum": 63604, "atom2_serNum": 63606, "donAcc_type": "acceptable", "distance": 2.884, "atom1_id": "///U/93/O", "atom2_id": "///U/93/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6307, "atom1_serNum": 63631, "atom2_serNum": 63655, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///U/97/O", "atom2_id": "///U/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6308, "atom1_serNum": 63640, "atom2_serNum": 63666, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///U/98/O", "atom2_id": "///U/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6309, "atom1_serNum": 63646, "atom2_serNum": 63677, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///U/99/O", "atom2_id": "///U/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6310, "atom1_serNum": 63653, "atom2_serNum": 63684, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///U/100/O", "atom2_id": "///U/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6311, "atom1_serNum": 63658, "atom2_serNum": 63692, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///U/101/O", "atom2_id": "///U/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6312, "atom1_serNum": 63669, "atom2_serNum": 63701, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///U/102/O", "atom2_id": "///U/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6313, "atom1_serNum": 63680, "atom2_serNum": 63706, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///U/103/O", "atom2_id": "///U/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6314, "atom1_serNum": 63687, "atom2_serNum": 63714, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///U/104/O", "atom2_id": "///U/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6315, "atom1_serNum": 63695, "atom2_serNum": 63723, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///U/105/O", "atom2_id": "///U/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6316, "atom1_serNum": 63704, "atom2_serNum": 63727, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///U/106/O", "atom2_id": "///U/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6317, "atom1_serNum": 63709, "atom2_serNum": 63752, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///U/107/O", "atom2_id": "///U/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6318, "atom1_serNum": 63730, "atom2_serNum": 63744, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///U/110/O", "atom2_id": "///U/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6319, "atom1_serNum": 63747, "atom2_serNum": 63838, "donAcc_type": "standard", "distance": 3.235, "atom1_id": "///U/112/O", "atom2_id": "///U/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6320, "atom1_serNum": 63759, "atom2_serNum": 63824, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///U/114/N", "atom2_id": "///U/122/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6321, "atom1_serNum": 63762, "atom2_serNum": 63821, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///U/114/O", "atom2_id": "///U/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6322, "atom1_serNum": 63776, "atom2_serNum": 63809, "donAcc_type": "standard", "distance": 3.257, "atom1_id": "///U/115/NZ", "atom2_id": "///U/120/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6323, "atom1_serNum": 63777, "atom2_serNum": 63809, "donAcc_type": "standard", "distance": 3.492, "atom1_id": "///U/116/N", "atom2_id": "///U/120/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6324, "atom1_serNum": 63784, "atom2_serNum": 63805, "donAcc_type": "questionable", "distance": 3.090, "atom1_id": "///U/116/OD2", "atom2_id": "///U/119/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6325, "atom1_serNum": 63792, "atom2_serNum": 63829, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///U/117/OE1", "atom2_id": "///U/122/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6326, "atom1_serNum": 63841, "atom2_serNum": 63865, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///U/124/O", "atom2_id": "///U/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6327, "atom1_serNum": 63843, "atom2_serNum": 63859, "donAcc_type": "acceptable", "distance": 3.550, "atom1_id": "///U/124/OG1", "atom2_id": "///U/126/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6328, "atom1_serNum": 63848, "atom2_serNum": 63874, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///U/125/O", "atom2_id": "///U/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6329, "atom1_serNum": 63855, "atom2_serNum": 63885, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///U/126/O", "atom2_id": "///U/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6330, "atom1_serNum": 63860, "atom2_serNum": 63884, "donAcc_type": "questionable", "distance": 3.318, "atom1_id": "///U/126/NE2", "atom2_id": "///U/129/NH2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6331, "atom1_serNum": 63864, "atom2_serNum": 63893, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///U/127/O", "atom2_id": "///U/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6332, "atom1_serNum": 63868, "atom2_serNum": 63901, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///U/128/O", "atom2_id": "///U/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6333, "atom1_serNum": 63877, "atom2_serNum": 63909, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///U/129/O", "atom2_id": "///U/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6334, "atom1_serNum": 63888, "atom2_serNum": 63920, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///U/130/O", "atom2_id": "///U/134/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6335, "atom1_serNum": 63896, "atom2_serNum": 63928, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///U/131/O", "atom2_id": "///U/135/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6336, "atom1_serNum": 63904, "atom2_serNum": 63933, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///U/132/O", "atom2_id": "///U/136/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6337, "atom1_serNum": 63912, "atom2_serNum": 63937, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///U/133/O", "atom2_id": "///U/137/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6338, "atom1_serNum": 63923, "atom2_serNum": 63946, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///U/134/O", "atom2_id": "///U/138/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6339, "atom1_serNum": 63931, "atom2_serNum": 63953, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///U/135/O", "atom2_id": "///U/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6340, "atom1_serNum": 63936, "atom2_serNum": 63958, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///U/136/O", "atom2_id": "///U/140/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6341, "atom1_serNum": 63940, "atom2_serNum": 63963, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///U/137/O", "atom2_id": "///U/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6342, "atom1_serNum": 63949, "atom2_serNum": 63968, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///U/138/O", "atom2_id": "///U/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6343, "atom1_serNum": 63956, "atom2_serNum": 63977, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///U/139/O", "atom2_id": "///U/143/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6344, "atom1_serNum": 63956, "atom2_serNum": 63985, "donAcc_type": "standard", "distance": 3.360, "atom1_id": "///U/139/O", "atom2_id": "///U/143/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6345, "atom1_serNum": 63987, "atom2_serNum": 64780, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///V/18/N", "atom2_id": "///V/117/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6346, "atom1_serNum": 63990, "atom2_serNum": 64008, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///V/18/O", "atom2_id": "///V/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6347, "atom1_serNum": 64008, "atom2_serNum": 64584, "donAcc_type": "standard", "distance": 2.671, "atom1_id": "///V/20/N", "atom2_id": "///V/91/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6348, "atom1_serNum": 64011, "atom2_serNum": 64581, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///V/20/O", "atom2_id": "///V/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6349, "atom1_serNum": 64016, "atom2_serNum": 64765, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///V/21/N", "atom2_id": "///V/115/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6350, "atom1_serNum": 64019, "atom2_serNum": 64762, "donAcc_type": "standard", "distance": 2.689, "atom1_id": "///V/21/O", "atom2_id": "///V/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6351, "atom1_serNum": 64027, "atom2_serNum": 64568, "donAcc_type": "standard", "distance": 3.378, "atom1_id": "///V/22/N", "atom2_id": "///V/89/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6352, "atom1_serNum": 64030, "atom2_serNum": 64565, "donAcc_type": "standard", "distance": 3.499, "atom1_id": "///V/22/O", "atom2_id": "///V/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6353, "atom1_serNum": 64035, "atom2_serNum": 64749, "donAcc_type": "standard", "distance": 2.499, "atom1_id": "///V/23/N", "atom2_id": "///V/113/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6354, "atom1_serNum": 64038, "atom2_serNum": 64746, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///V/23/O", "atom2_id": "///V/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6355, "atom1_serNum": 64040, "atom2_serNum": 64753, "donAcc_type": "acceptable", "distance": 3.237, "atom1_id": "///V/23/OG1", "atom2_id": "///V/113/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6356, "atom1_serNum": 64042, "atom2_serNum": 64549, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///V/24/N", "atom2_id": "///V/87/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6357, "atom1_serNum": 64045, "atom2_serNum": 64546, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///V/24/O", "atom2_id": "///V/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6358, "atom1_serNum": 64053, "atom2_serNum": 64730, "donAcc_type": "standard", "distance": 3.741, "atom1_id": "///V/25/O", "atom2_id": "///V/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6359, "atom1_serNum": 64055, "atom2_serNum": 64733, "donAcc_type": "acceptable", "distance": 3.921, "atom1_id": "///V/25/OG1", "atom2_id": "///V/111/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6360, "atom1_serNum": 64057, "atom2_serNum": 64530, "donAcc_type": "standard", "distance": 3.320, "atom1_id": "///V/26/N", "atom2_id": "///V/85/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6361, "atom1_serNum": 64060, "atom2_serNum": 64527, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///V/26/O", "atom2_id": "///V/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6362, "atom1_serNum": 64062, "atom2_serNum": 64077, "donAcc_type": "acceptable", "distance": 2.823, "atom1_id": "///V/26/OG", "atom2_id": "///V/28/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6363, "atom1_serNum": 64066, "atom2_serNum": 64511, "donAcc_type": "questionable", "distance": 3.133, "atom1_id": "///V/27/O", "atom2_id": "///V/83/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6364, "atom1_serNum": 64073, "atom2_serNum": 71584, "donAcc_type": "standard", "distance": 3.299, "atom1_id": "///V/27/NH2", "atom2_id": "///e/50/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6365, "atom1_serNum": 64080, "atom2_serNum": 64082, "donAcc_type": "standard", "distance": 2.696, "atom1_id": "///V/28/OD1", "atom2_id": "///V/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6366, "atom1_serNum": 64085, "atom2_serNum": 64112, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///V/29/O", "atom2_id": "///V/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6367, "atom1_serNum": 64092, "atom2_serNum": 64121, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///V/30/O", "atom2_id": "///V/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6368, "atom1_serNum": 64101, "atom2_serNum": 64130, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///V/31/O", "atom2_id": "///V/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6369, "atom1_serNum": 64107, "atom2_serNum": 64137, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///V/32/O", "atom2_id": "///V/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6370, "atom1_serNum": 64115, "atom2_serNum": 64143, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///V/33/O", "atom2_id": "///V/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6371, "atom1_serNum": 64124, "atom2_serNum": 64148, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///V/34/O", "atom2_id": "///V/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6372, "atom1_serNum": 64133, "atom2_serNum": 64156, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///V/35/O", "atom2_id": "///V/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6373, "atom1_serNum": 64140, "atom2_serNum": 64164, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///V/36/O", "atom2_id": "///V/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6374, "atom1_serNum": 64146, "atom2_serNum": 64172, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///V/37/O", "atom2_id": "///V/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6375, "atom1_serNum": 64151, "atom2_serNum": 64183, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///V/38/O", "atom2_id": "///V/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6376, "atom1_serNum": 64159, "atom2_serNum": 64187, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///V/39/O", "atom2_id": "///V/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6377, "atom1_serNum": 64167, "atom2_serNum": 64192, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///V/40/O", "atom2_id": "///V/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6378, "atom1_serNum": 64175, "atom2_serNum": 64201, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///V/41/O", "atom2_id": "///V/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6379, "atom1_serNum": 64186, "atom2_serNum": 64210, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///V/42/O", "atom2_id": "///V/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6380, "atom1_serNum": 64190, "atom2_serNum": 64219, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///V/43/O", "atom2_id": "///V/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6381, "atom1_serNum": 64190, "atom2_serNum": 64227, "donAcc_type": "standard", "distance": 3.378, "atom1_id": "///V/43/O", "atom2_id": "///V/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6382, "atom1_serNum": 64195, "atom2_serNum": 64219, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///V/44/O", "atom2_id": "///V/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6383, "atom1_serNum": 64204, "atom2_serNum": 64226, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///V/45/O", "atom2_id": "///V/47/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6384, "atom1_serNum": 64251, "atom2_serNum": 64576, "donAcc_type": "standard", "distance": 3.462, "atom1_id": "///V/51/N", "atom2_id": "///V/90/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6385, "atom1_serNum": 64259, "atom2_serNum": 64580, "donAcc_type": "standard", "distance": 3.948, "atom1_id": "///V/51/NZ", "atom2_id": "///V/90/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6386, "atom1_serNum": 64263, "atom2_serNum": 64271, "donAcc_type": "standard", "distance": 3.034, "atom1_id": "///V/52/O", "atom2_id": "///V/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6387, "atom1_serNum": 64271, "atom2_serNum": 64560, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///V/54/N", "atom2_id": "///V/88/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6388, "atom1_serNum": 64274, "atom2_serNum": 64557, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///V/54/O", "atom2_id": "///V/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6389, "atom1_serNum": 64289, "atom2_serNum": 64540, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///V/56/N", "atom2_id": "///V/86/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6390, "atom1_serNum": 64309, "atom2_serNum": 64522, "donAcc_type": "acceptable", "distance": 2.393, "atom1_id": "///V/58/OG1", "atom2_id": "///V/84/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6391, "atom1_serNum": 64311, "atom2_serNum": 64522, "donAcc_type": "standard", "distance": 3.557, "atom1_id": "///V/59/N", "atom2_id": "///V/84/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6392, "atom1_serNum": 64314, "atom2_serNum": 64503, "donAcc_type": "questionable", "distance": 2.929, "atom1_id": "///V/59/O", "atom2_id": "///V/82/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6393, "atom1_serNum": 64314, "atom2_serNum": 64519, "donAcc_type": "standard", "distance": 3.303, "atom1_id": "///V/59/O", "atom2_id": "///V/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6394, "atom1_serNum": 64327, "atom2_serNum": 64503, "donAcc_type": "standard", "distance": 3.357, "atom1_id": "///V/61/N", "atom2_id": "///V/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6395, "atom1_serNum": 64330, "atom2_serNum": 64483, "donAcc_type": "questionable", "distance": 3.338, "atom1_id": "///V/61/O", "atom2_id": "///V/80/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6396, "atom1_serNum": 64330, "atom2_serNum": 64500, "donAcc_type": "standard", "distance": 3.208, "atom1_id": "///V/61/O", "atom2_id": "///V/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6397, "atom1_serNum": 64338, "atom2_serNum": 71443, "donAcc_type": "standard", "distance": 2.685, "atom1_id": "///V/62/O", "atom2_id": "///e/33/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6398, "atom1_serNum": 64342, "atom2_serNum": 64499, "donAcc_type": "questionable", "distance": 3.070, "atom1_id": "///V/62/NE", "atom2_id": "///V/81/NE2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6399, "atom1_serNum": 64346, "atom2_serNum": 64483, "donAcc_type": "standard", "distance": 3.450, "atom1_id": "///V/63/N", "atom2_id": "///V/80/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6400, "atom1_serNum": 64361, "atom2_serNum": 64464, "donAcc_type": "standard", "distance": 3.675, "atom1_id": "///V/65/N", "atom2_id": "///V/78/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6401, "atom1_serNum": 64364, "atom2_serNum": 64461, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///V/65/O", "atom2_id": "///V/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6402, "atom1_serNum": 64375, "atom2_serNum": 64443, "donAcc_type": "standard", "distance": 3.907, "atom1_id": "///V/66/NE", "atom2_id": "///V/76/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6403, "atom1_serNum": 64391, "atom2_serNum": 71499, "donAcc_type": "standard", "distance": 2.624, "atom1_id": "///V/68/O", "atom2_id": "///e/40/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6404, "atom1_serNum": 64393, "atom2_serNum": 64405, "donAcc_type": "acceptable", "distance": 2.758, "atom1_id": "///V/68/OG1", "atom2_id": "///V/70/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6405, "atom1_serNum": 64398, "atom2_serNum": 71500, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///V/69/O", "atom2_id": "///e/40/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6406, "atom1_serNum": 64398, "atom2_serNum": 71509, "donAcc_type": "standard", "distance": 3.662, "atom1_id": "///V/69/O", "atom2_id": "///e/41/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6407, "atom1_serNum": 64428, "atom2_serNum": 64440, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///V/74/O", "atom2_id": "///V/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6408, "atom1_serNum": 64467, "atom2_serNum": 64469, "donAcc_type": "standard", "distance": 2.446, "atom1_id": "///V/78/OD1", "atom2_id": "///V/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6409, "atom1_serNum": 64468, "atom2_serNum": 71536, "donAcc_type": "standard", "distance": 3.763, "atom1_id": "///V/78/OD2", "atom2_id": "///e/44/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6410, "atom1_serNum": 64469, "atom2_serNum": 71620, "donAcc_type": "questionable", "distance": 3.290, "atom1_id": "///V/79/N", "atom2_id": "///e/54/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6411, "atom1_serNum": 64491, "atom2_serNum": 71607, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///V/81/N", "atom2_id": "///e/53/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6412, "atom1_serNum": 64498, "atom2_serNum": 64517, "donAcc_type": "standard", "distance": 2.571, "atom1_id": "///V/81/OE1", "atom2_id": "///V/83/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6413, "atom1_serNum": 64498, "atom2_serNum": 64518, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///V/81/OE1", "atom2_id": "///V/83/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6414, "atom1_serNum": 64608, "atom2_serNum": 64635, "donAcc_type": "standard", "distance": 3.801, "atom1_id": "///V/94/O", "atom2_id": "///V/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6415, "atom1_serNum": 64615, "atom2_serNum": 64642, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///V/95/O", "atom2_id": "///V/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6416, "atom1_serNum": 64621, "atom2_serNum": 64651, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///V/96/O", "atom2_id": "///V/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6417, "atom1_serNum": 64630, "atom2_serNum": 64660, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///V/97/O", "atom2_id": "///V/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6418, "atom1_serNum": 64638, "atom2_serNum": 64668, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///V/98/O", "atom2_id": "///V/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6419, "atom1_serNum": 64645, "atom2_serNum": 64673, "donAcc_type": "acceptable", "distance": 2.703, "atom1_id": "///V/99/O", "atom2_id": "///V/102/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6420, "atom1_serNum": 64645, "atom2_serNum": 64675, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///V/99/O", "atom2_id": "///V/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6421, "atom1_serNum": 64645, "atom2_serNum": 64680, "donAcc_type": "acceptable", "distance": 2.761, "atom1_id": "///V/99/O", "atom2_id": "///V/103/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6422, "atom1_serNum": 64663, "atom2_serNum": 64681, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///V/101/O", "atom2_id": "///V/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6423, "atom1_serNum": 64663, "atom2_serNum": 64684, "donAcc_type": "questionable", "distance": 2.752, "atom1_id": "///V/101/O", "atom2_id": "///V/104/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6424, "atom1_serNum": 64692, "atom2_serNum": 64694, "donAcc_type": "acceptable", "distance": 2.731, "atom1_id": "///V/105/O", "atom2_id": "///V/105/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6425, "atom1_serNum": 64706, "atom2_serNum": 64726, "donAcc_type": "questionable", "distance": 3.226, "atom1_id": "///V/107/O", "atom2_id": "///V/110/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6426, "atom1_serNum": 64754, "atom2_serNum": 64767, "donAcc_type": "acceptable", "distance": 3.224, "atom1_id": "///V/113/OE2", "atom2_id": "///V/115/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6427, "atom1_serNum": 64786, "atom2_serNum": 64828, "donAcc_type": "questionable", "distance": 2.873, "atom1_id": "///W/1/O", "atom2_id": "///W/7/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6428, "atom1_serNum": 64786, "atom2_serNum": 64845, "donAcc_type": "standard", "distance": 3.796, "atom1_id": "///W/1/O", "atom2_id": "///W/9/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6429, "atom1_serNum": 64806, "atom2_serNum": 64828, "donAcc_type": "questionable", "distance": 2.744, "atom1_id": "///W/3/OD1", "atom2_id": "///W/7/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6430, "atom1_serNum": 64807, "atom2_serNum": 64833, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///W/3/ND2", "atom2_id": "///W/7/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6431, "atom1_serNum": 64858, "atom2_serNum": 64860, "donAcc_type": "standard", "distance": 3.270, "atom1_id": "///W/10/OD1", "atom2_id": "///W/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6432, "atom1_serNum": 64904, "atom2_serNum": 65018, "donAcc_type": "acceptable", "distance": 2.938, "atom1_id": "///W/15/NH2", "atom2_id": "///W/31/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6433, "atom1_serNum": 64914, "atom2_serNum": 64948, "donAcc_type": "standard", "distance": 2.560, "atom1_id": "///W/17/N", "atom2_id": "///W/22/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6434, "atom1_serNum": 64917, "atom2_serNum": 64937, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///W/17/O", "atom2_id": "///W/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6435, "atom1_serNum": 64920, "atom2_serNum": 65200, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///W/18/N", "atom2_id": "///W/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6436, "atom1_serNum": 64929, "atom2_serNum": 65590, "donAcc_type": "standard", "distance": 3.245, "atom1_id": "///W/19/O", "atom2_id": "///X/23/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6437, "atom1_serNum": 64993, "atom2_serNum": 65018, "donAcc_type": "acceptable", "distance": 3.083, "atom1_id": "///W/28/O", "atom2_id": "///W/31/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6438, "atom1_serNum": 64997, "atom2_serNum": 65216, "donAcc_type": "standard", "distance": 3.840, "atom1_id": "///W/28/OD2", "atom2_id": "///W/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6439, "atom1_serNum": 65011, "atom2_serNum": 65242, "donAcc_type": "standard", "distance": 3.390, "atom1_id": "///W/30/O", "atom2_id": "///W/60/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6440, "atom1_serNum": 65019, "atom2_serNum": 65205, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///W/32/N", "atom2_id": "///W/55/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6441, "atom1_serNum": 65022, "atom2_serNum": 65202, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///W/32/O", "atom2_id": "///W/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6442, "atom1_serNum": 65036, "atom2_serNum": 65188, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///W/34/N", "atom2_id": "///W/53/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6443, "atom1_serNum": 65039, "atom2_serNum": 65185, "donAcc_type": "standard", "distance": 2.577, "atom1_id": "///W/34/O", "atom2_id": "///W/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6444, "atom1_serNum": 65050, "atom2_serNum": 65183, "donAcc_type": "acceptable", "distance": 2.538, "atom1_id": "///W/35/OD1", "atom2_id": "///W/52/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6445, "atom1_serNum": 65052, "atom2_serNum": 65172, "donAcc_type": "standard", "distance": 2.628, "atom1_id": "///W/36/N", "atom2_id": "///W/51/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6446, "atom1_serNum": 65055, "atom2_serNum": 65169, "donAcc_type": "standard", "distance": 2.589, "atom1_id": "///W/36/O", "atom2_id": "///W/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6447, "atom1_serNum": 65064, "atom2_serNum": 65071, "donAcc_type": "standard", "distance": 2.618, "atom1_id": "///W/38/N", "atom2_id": "///W/38/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6448, "atom1_serNum": 65080, "atom2_serNum": 65086, "donAcc_type": "standard", "distance": 2.549, "atom1_id": "///W/40/N", "atom2_id": "///W/40/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6449, "atom1_serNum": 65083, "atom2_serNum": 65111, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///W/40/O", "atom2_id": "///W/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6450, "atom1_serNum": 65086, "atom2_serNum": 65115, "donAcc_type": "standard", "distance": 2.494, "atom1_id": "///W/40/OD1", "atom2_id": "///W/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6451, "atom1_serNum": 65107, "atom2_serNum": 65109, "donAcc_type": "acceptable", "distance": 3.039, "atom1_id": "///W/43/O", "atom2_id": "///W/43/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6452, "atom1_serNum": 65143, "atom2_serNum": 65145, "donAcc_type": "standard", "distance": 2.546, "atom1_id": "///W/47/OD1", "atom2_id": "///W/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6453, "atom1_serNum": 65143, "atom2_serNum": 65149, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///W/47/OD1", "atom2_id": "///W/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6454, "atom1_serNum": 65196, "atom2_serNum": 65365, "donAcc_type": "acceptable", "distance": 2.291, "atom1_id": "///W/53/OH", "atom2_id": "///W/76/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6455, "atom1_serNum": 65213, "atom2_serNum": 65233, "donAcc_type": "standard", "distance": 3.652, "atom1_id": "///W/56/O", "atom2_id": "///W/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6456, "atom1_serNum": 65219, "atom2_serNum": 65244, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///W/57/O", "atom2_id": "///W/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6457, "atom1_serNum": 65223, "atom2_serNum": 65255, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///W/58/O", "atom2_id": "///W/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6458, "atom1_serNum": 65228, "atom2_serNum": 65263, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///W/59/O", "atom2_id": "///W/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6459, "atom1_serNum": 65228, "atom2_serNum": 65267, "donAcc_type": "standard", "distance": 3.047, "atom1_id": "///W/59/O", "atom2_id": "///W/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6460, "atom1_serNum": 65270, "atom2_serNum": 65298, "donAcc_type": "standard", "distance": 3.319, "atom1_id": "///W/64/O", "atom2_id": "///W/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6461, "atom1_serNum": 65279, "atom2_serNum": 65303, "donAcc_type": "acceptable", "distance": 2.729, "atom1_id": "///W/65/O", "atom2_id": "///W/68/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6462, "atom1_serNum": 65279, "atom2_serNum": 65304, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///W/65/O", "atom2_id": "///W/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6463, "atom1_serNum": 65285, "atom2_serNum": 65312, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///W/66/O", "atom2_id": "///W/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6464, "atom1_serNum": 65293, "atom2_serNum": 65320, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///W/67/O", "atom2_id": "///W/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6465, "atom1_serNum": 65297, "atom2_serNum": 65329, "donAcc_type": "standard", "distance": 2.434, "atom1_id": "///W/67/OD2", "atom2_id": "///W/71/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6466, "atom1_serNum": 65301, "atom2_serNum": 65331, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///W/68/O", "atom2_id": "///W/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6467, "atom1_serNum": 65307, "atom2_serNum": 65339, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///W/69/O", "atom2_id": "///W/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6468, "atom1_serNum": 65315, "atom2_serNum": 65344, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///W/70/O", "atom2_id": "///W/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6469, "atom1_serNum": 65323, "atom2_serNum": 65353, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///W/71/O", "atom2_id": "///W/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6470, "atom1_serNum": 65334, "atom2_serNum": 65358, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///W/72/O", "atom2_id": "///W/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6471, "atom1_serNum": 65342, "atom2_serNum": 65366, "donAcc_type": "standard", "distance": 3.232, "atom1_id": "///W/73/O", "atom2_id": "///W/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6472, "atom1_serNum": 65342, "atom2_serNum": 65370, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///W/73/O", "atom2_id": "///W/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6473, "atom1_serNum": 65342, "atom2_serNum": 65378, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///W/73/O", "atom2_id": "///W/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6474, "atom1_serNum": 65347, "atom2_serNum": 65399, "donAcc_type": "standard", "distance": 2.479, "atom1_id": "///W/74/O", "atom2_id": "///W/81/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6475, "atom1_serNum": 65352, "atom2_serNum": 65388, "donAcc_type": "standard", "distance": 2.623, "atom1_id": "///W/74/NZ", "atom2_id": "///W/80/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6476, "atom1_serNum": 65352, "atom2_serNum": 65394, "donAcc_type": "standard", "distance": 2.621, "atom1_id": "///W/74/NZ", "atom2_id": "///W/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6477, "atom1_serNum": 65400, "atom2_serNum": 65406, "donAcc_type": "standard", "distance": 2.647, "atom1_id": "///W/82/N", "atom2_id": "///W/82/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6478, "atom1_serNum": 65406, "atom2_serNum": 65408, "donAcc_type": "standard", "distance": 2.642, "atom1_id": "///W/82/OD1", "atom2_id": "///W/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6479, "atom1_serNum": 65423, "atom2_serNum": 65438, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///X/2/O", "atom2_id": "///X/4/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6480, "atom1_serNum": 65434, "atom2_serNum": 65481, "donAcc_type": "standard", "distance": 3.146, "atom1_id": "///X/3/NE", "atom2_id": "///X/9/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6481, "atom1_serNum": 65452, "atom2_serNum": 65454, "donAcc_type": "standard", "distance": 3.272, "atom1_id": "///X/5/OD1", "atom2_id": "///X/6/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6482, "atom1_serNum": 65452, "atom2_serNum": 65461, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///X/5/OD1", "atom2_id": "///X/7/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6483, "atom1_serNum": 65457, "atom2_serNum": 65482, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///X/6/O", "atom2_id": "///X/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6484, "atom1_serNum": 65464, "atom2_serNum": 65487, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///X/7/O", "atom2_id": "///X/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6485, "atom1_serNum": 65472, "atom2_serNum": 65495, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///X/8/O", "atom2_id": "///X/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6486, "atom1_serNum": 65477, "atom2_serNum": 65504, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///X/9/O", "atom2_id": "///X/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6487, "atom1_serNum": 65485, "atom2_serNum": 65510, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///X/10/O", "atom2_id": "///X/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6488, "atom1_serNum": 65490, "atom2_serNum": 65518, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///X/11/O", "atom2_id": "///X/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6489, "atom1_serNum": 65498, "atom2_serNum": 65526, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///X/12/O", "atom2_id": "///X/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6490, "atom1_serNum": 65507, "atom2_serNum": 65534, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///X/13/O", "atom2_id": "///X/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6491, "atom1_serNum": 65513, "atom2_serNum": 65539, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///X/14/O", "atom2_id": "///X/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6492, "atom1_serNum": 65521, "atom2_serNum": 65548, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///X/15/O", "atom2_id": "///X/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6493, "atom1_serNum": 65529, "atom2_serNum": 65557, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///X/16/O", "atom2_id": "///X/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6494, "atom1_serNum": 65537, "atom2_serNum": 65568, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///X/17/O", "atom2_id": "///X/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6495, "atom1_serNum": 65537, "atom2_serNum": 65572, "donAcc_type": "standard", "distance": 3.141, "atom1_id": "///X/17/O", "atom2_id": "///X/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6496, "atom1_serNum": 65547, "atom2_serNum": 65952, "donAcc_type": "standard", "distance": 3.391, "atom1_id": "///X/18/OE2", "atom2_id": "///X/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6497, "atom1_serNum": 65581, "atom2_serNum": 70006, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///X/23/N", "atom2_id": "///c/3/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6498, "atom1_serNum": 65584, "atom2_serNum": 65922, "donAcc_type": "standard", "distance": 3.205, "atom1_id": "///X/23/O", "atom2_id": "///X/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6499, "atom1_serNum": 65599, "atom2_serNum": 70033, "donAcc_type": "standard", "distance": 3.071, "atom1_id": "///X/24/OE1", "atom2_id": "///c/7/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6500, "atom1_serNum": 65600, "atom2_serNum": 65920, "donAcc_type": "standard", "distance": 3.990, "atom1_id": "///X/24/NE2", "atom2_id": "///X/64/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6501, "atom1_serNum": 65601, "atom2_serNum": 65910, "donAcc_type": "standard", "distance": 3.717, "atom1_id": "///X/25/N", "atom2_id": "///X/63/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6502, "atom1_serNum": 65604, "atom2_serNum": 65907, "donAcc_type": "standard", "distance": 3.331, "atom1_id": "///X/25/O", "atom2_id": "///X/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6503, "atom1_serNum": 65616, "atom2_serNum": 65895, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///X/27/N", "atom2_id": "///X/61/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6504, "atom1_serNum": 65619, "atom2_serNum": 65892, "donAcc_type": "standard", "distance": 3.405, "atom1_id": "///X/27/O", "atom2_id": "///X/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6505, "atom1_serNum": 65627, "atom2_serNum": 65882, "donAcc_type": "questionable", "distance": 2.954, "atom1_id": "///X/28/O", "atom2_id": "///X/59/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6506, "atom1_serNum": 65651, "atom2_serNum": 65678, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///X/31/O", "atom2_id": "///X/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6507, "atom1_serNum": 65657, "atom2_serNum": 65685, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///X/32/O", "atom2_id": "///X/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6508, "atom1_serNum": 65666, "atom2_serNum": 65696, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///X/33/O", "atom2_id": "///X/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6509, "atom1_serNum": 65673, "atom2_serNum": 65707, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///X/34/O", "atom2_id": "///X/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6510, "atom1_serNum": 65681, "atom2_serNum": 65715, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///X/35/O", "atom2_id": "///X/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6511, "atom1_serNum": 65681, "atom2_serNum": 65720, "donAcc_type": "acceptable", "distance": 3.014, "atom1_id": "///X/35/O", "atom2_id": "///X/39/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6512, "atom1_serNum": 65688, "atom2_serNum": 65722, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///X/36/O", "atom2_id": "///X/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6513, "atom1_serNum": 65699, "atom2_serNum": 65729, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///X/37/O", "atom2_id": "///X/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6514, "atom1_serNum": 65710, "atom2_serNum": 65737, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///X/38/O", "atom2_id": "///X/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6515, "atom1_serNum": 65718, "atom2_serNum": 65745, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///X/39/O", "atom2_id": "///X/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6516, "atom1_serNum": 65725, "atom2_serNum": 65754, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///X/40/O", "atom2_id": "///X/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6517, "atom1_serNum": 65732, "atom2_serNum": 65764, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///X/41/O", "atom2_id": "///X/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6518, "atom1_serNum": 65732, "atom2_serNum": 65768, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///X/41/O", "atom2_id": "///X/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6519, "atom1_serNum": 65740, "atom2_serNum": 65764, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///X/42/O", "atom2_id": "///X/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6520, "atom1_serNum": 65763, "atom2_serNum": 66301, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///X/44/NE2", "atom2_id": "///X/112/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6521, "atom1_serNum": 65767, "atom2_serNum": 65950, "donAcc_type": "standard", "distance": 3.734, "atom1_id": "///X/45/O", "atom2_id": "///X/68/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6522, "atom1_serNum": 65779, "atom2_serNum": 66453, "donAcc_type": "acceptable", "distance": 3.903, "atom1_id": "///X/46/OH", "atom2_id": "///X/130/OXT", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6523, "atom1_serNum": 65788, "atom2_serNum": 65917, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///X/48/N", "atom2_id": "///X/64/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6524, "atom1_serNum": 65795, "atom2_serNum": 65914, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///X/49/O", "atom2_id": "///X/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6525, "atom1_serNum": 65812, "atom2_serNum": 65903, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///X/51/N", "atom2_id": "///X/62/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6526, "atom1_serNum": 65815, "atom2_serNum": 65900, "donAcc_type": "standard", "distance": 3.078, "atom1_id": "///X/51/O", "atom2_id": "///X/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6527, "atom1_serNum": 65829, "atom2_serNum": 65886, "donAcc_type": "standard", "distance": 2.567, "atom1_id": "///X/53/N", "atom2_id": "///X/60/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6528, "atom1_serNum": 65832, "atom2_serNum": 65883, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///X/53/O", "atom2_id": "///X/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6529, "atom1_serNum": 65851, "atom2_serNum": 65863, "donAcc_type": "standard", "distance": 2.626, "atom1_id": "///X/55/OD1", "atom2_id": "///X/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6530, "atom1_serNum": 65851, "atom2_serNum": 65874, "donAcc_type": "standard", "distance": 2.469, "atom1_id": "///X/55/OD1", "atom2_id": "///X/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6531, "atom1_serNum": 65891, "atom2_serNum": 70175, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///X/60/NZ", "atom2_id": "///c/23/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6532, "atom1_serNum": 65914, "atom2_serNum": 65920, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///X/64/N", "atom2_id": "///X/64/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6533, "atom1_serNum": 65960, "atom2_serNum": 66445, "donAcc_type": "standard", "distance": 3.212, "atom1_id": "///X/70/N", "atom2_id": "///X/130/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6534, "atom1_serNum": 65967, "atom2_serNum": 66445, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///X/70/ND2", "atom2_id": "///X/130/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6535, "atom1_serNum": 65967, "atom2_serNum": 66453, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///X/70/ND2", "atom2_id": "///X/130/OXT", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6536, "atom1_serNum": 65983, "atom2_serNum": 66423, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///X/73/N", "atom2_id": "///X/128/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6537, "atom1_serNum": 65986, "atom2_serNum": 66420, "donAcc_type": "standard", "distance": 3.503, "atom1_id": "///X/73/O", "atom2_id": "///X/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6538, "atom1_serNum": 65994, "atom2_serNum": 66411, "donAcc_type": "standard", "distance": 3.117, "atom1_id": "///X/75/N", "atom2_id": "///X/126/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6539, "atom1_serNum": 66005, "atom2_serNum": 66007, "donAcc_type": "acceptable", "distance": 2.835, "atom1_id": "///X/76/O", "atom2_id": "///X/76/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6540, "atom1_serNum": 66011, "atom2_serNum": 66026, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///X/77/O", "atom2_id": "///X/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6541, "atom1_serNum": 66029, "atom2_serNum": 66400, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///X/79/O", "atom2_id": "///X/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6542, "atom1_serNum": 66045, "atom2_serNum": 66390, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///X/81/N", "atom2_id": "///X/123/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6543, "atom1_serNum": 66048, "atom2_serNum": 66387, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///X/81/O", "atom2_id": "///X/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6544, "atom1_serNum": 66081, "atom2_serNum": 66112, "donAcc_type": "standard", "distance": 3.233, "atom1_id": "///X/85/O", "atom2_id": "///X/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6545, "atom1_serNum": 66089, "atom2_serNum": 66126, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///X/86/O", "atom2_id": "///X/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6546, "atom1_serNum": 66097, "atom2_serNum": 66135, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///X/87/O", "atom2_id": "///X/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6547, "atom1_serNum": 66097, "atom2_serNum": 66142, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///X/87/O", "atom2_id": "///X/91/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6548, "atom1_serNum": 66101, "atom2_serNum": 66134, "donAcc_type": "standard", "distance": 2.316, "atom1_id": "///X/87/OE1", "atom2_id": "///X/90/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6549, "atom1_serNum": 66102, "atom2_serNum": 66190, "donAcc_type": "standard", "distance": 3.741, "atom1_id": "///X/87/OE2", "atom2_id": "///X/97/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6550, "atom1_serNum": 66106, "atom2_serNum": 66149, "donAcc_type": "questionable", "distance": 2.813, "atom1_id": "///X/88/O", "atom2_id": "///X/92/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6551, "atom1_serNum": 66115, "atom2_serNum": 66149, "donAcc_type": "questionable", "distance": 2.808, "atom1_id": "///X/89/O", "atom2_id": "///X/92/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6552, "atom1_serNum": 66115, "atom2_serNum": 66151, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///X/89/O", "atom2_id": "///X/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6553, "atom1_serNum": 66133, "atom2_serNum": 66311, "donAcc_type": "standard", "distance": 3.271, "atom1_id": "///X/90/OE1", "atom2_id": "///X/113/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6554, "atom1_serNum": 66179, "atom2_serNum": 66191, "donAcc_type": "acceptable", "distance": 3.469, "atom1_id": "///X/96/OG", "atom2_id": "///X/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6555, "atom1_serNum": 66215, "atom2_serNum": 66434, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///X/101/N", "atom2_id": "///X/129/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6556, "atom1_serNum": 66218, "atom2_serNum": 66431, "donAcc_type": "standard", "distance": 3.238, "atom1_id": "///X/101/O", "atom2_id": "///X/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6557, "atom1_serNum": 66226, "atom2_serNum": 66308, "donAcc_type": "acceptable", "distance": 3.216, "atom1_id": "///X/102/N", "atom2_id": "///X/113/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6558, "atom1_serNum": 66229, "atom2_serNum": 66302, "donAcc_type": "standard", "distance": 2.517, "atom1_id": "///X/102/O", "atom2_id": "///X/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6559, "atom1_serNum": 66234, "atom2_serNum": 66419, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///X/103/N", "atom2_id": "///X/127/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6560, "atom1_serNum": 66237, "atom2_serNum": 66408, "donAcc_type": "standard", "distance": 3.085, "atom1_id": "///X/103/O", "atom2_id": "///X/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6561, "atom1_serNum": 66241, "atom2_serNum": 66289, "donAcc_type": "standard", "distance": 3.187, "atom1_id": "///X/104/N", "atom2_id": "///X/111/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6562, "atom1_serNum": 66249, "atom2_serNum": 66394, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///X/105/N", "atom2_id": "///X/124/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6563, "atom1_serNum": 66252, "atom2_serNum": 66254, "donAcc_type": "acceptable", "distance": 3.189, "atom1_id": "///X/105/O", "atom2_id": "///X/105/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6564, "atom1_serNum": 66252, "atom2_serNum": 66391, "donAcc_type": "standard", "distance": 3.193, "atom1_id": "///X/105/O", "atom2_id": "///X/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6565, "atom1_serNum": 66254, "atom2_serNum": 66394, "donAcc_type": "acceptable", "distance": 2.974, "atom1_id": "///X/105/OG1", "atom2_id": "///X/124/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6566, "atom1_serNum": 66259, "atom2_serNum": 66274, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///X/106/O", "atom2_id": "///X/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6567, "atom1_serNum": 66277, "atom2_serNum": 66286, "donAcc_type": "standard", "distance": 3.136, "atom1_id": "///X/109/O", "atom2_id": "///X/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6568, "atom1_serNum": 66297, "atom2_serNum": 66330, "donAcc_type": "standard", "distance": 3.072, "atom1_id": "///X/112/O", "atom2_id": "///X/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6569, "atom1_serNum": 66305, "atom2_serNum": 66335, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///X/113/O", "atom2_id": "///X/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6570, "atom1_serNum": 66315, "atom2_serNum": 66346, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///X/114/O", "atom2_id": "///X/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6571, "atom1_serNum": 66324, "atom2_serNum": 66357, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///X/115/O", "atom2_id": "///X/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6572, "atom1_serNum": 66333, "atom2_serNum": 66366, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///X/116/O", "atom2_id": "///X/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6573, "atom1_serNum": 66333, "atom2_serNum": 66376, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///X/116/O", "atom2_id": "///X/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6574, "atom1_serNum": 66338, "atom2_serNum": 66366, "donAcc_type": "standard", "distance": 3.258, "atom1_id": "///X/117/O", "atom2_id": "///X/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6575, "atom1_serNum": 66462, "atom2_serNum": 66474, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///Y/3/O", "atom2_id": "///Y/5/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6576, "atom1_serNum": 66488, "atom2_serNum": 66508, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///Y/6/O", "atom2_id": "///Y/9/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6577, "atom1_serNum": 66488, "atom2_serNum": 66513, "donAcc_type": "acceptable", "distance": 2.880, "atom1_id": "///Y/6/O", "atom2_id": "///Y/9/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6578, "atom1_serNum": 66511, "atom2_serNum": 66513, "donAcc_type": "acceptable", "distance": 2.445, "atom1_id": "///Y/9/O", "atom2_id": "///Y/9/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6579, "atom1_serNum": 66518, "atom2_serNum": 66548, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///Y/10/O", "atom2_id": "///Y/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6580, "atom1_serNum": 66523, "atom2_serNum": 66559, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///Y/11/O", "atom2_id": "///Y/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6581, "atom1_serNum": 66534, "atom2_serNum": 66565, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///Y/12/O", "atom2_id": "///Y/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6582, "atom1_serNum": 66543, "atom2_serNum": 66575, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///Y/13/O", "atom2_id": "///Y/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6583, "atom1_serNum": 66551, "atom2_serNum": 66586, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///Y/14/O", "atom2_id": "///Y/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6584, "atom1_serNum": 66562, "atom2_serNum": 66597, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///Y/15/O", "atom2_id": "///Y/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6585, "atom1_serNum": 66568, "atom2_serNum": 66605, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///Y/16/O", "atom2_id": "///Y/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6586, "atom1_serNum": 66578, "atom2_serNum": 66614, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///Y/17/O", "atom2_id": "///Y/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6587, "atom1_serNum": 66589, "atom2_serNum": 66623, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///Y/18/O", "atom2_id": "///Y/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6588, "atom1_serNum": 66600, "atom2_serNum": 66637, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///Y/19/O", "atom2_id": "///Y/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6589, "atom1_serNum": 66617, "atom2_serNum": 66647, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///Y/21/O", "atom2_id": "///Y/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6590, "atom1_serNum": 66658, "atom2_serNum": 66694, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///Y/25/O", "atom2_id": "///Y/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6591, "atom1_serNum": 66667, "atom2_serNum": 66703, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///Y/26/O", "atom2_id": "///Y/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6592, "atom1_serNum": 66676, "atom2_serNum": 66708, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///Y/27/O", "atom2_id": "///Y/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6593, "atom1_serNum": 66676, "atom2_serNum": 66714, "donAcc_type": "acceptable", "distance": 3.176, "atom1_id": "///Y/27/O", "atom2_id": "///Y/31/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6594, "atom1_serNum": 66708, "atom2_serNum": 66714, "donAcc_type": "acceptable", "distance": 3.134, "atom1_id": "///Y/31/N", "atom2_id": "///Y/31/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6595, "atom1_serNum": 66729, "atom2_serNum": 66750, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///Y/33/O", "atom2_id": "///Y/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6596, "atom1_serNum": 66733, "atom2_serNum": 66759, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///Y/34/O", "atom2_id": "///Y/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6597, "atom1_serNum": 66740, "atom2_serNum": 66764, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///Y/35/O", "atom2_id": "///Y/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6598, "atom1_serNum": 66771, "atom2_serNum": 66794, "donAcc_type": "questionable", "distance": 3.238, "atom1_id": "///Y/39/ND2", "atom2_id": "///Y/43/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6599, "atom1_serNum": 66775, "atom2_serNum": 67054, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///Y/40/O", "atom2_id": "///Y/77/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6600, "atom1_serNum": 66782, "atom2_serNum": 67046, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///Y/41/O", "atom2_id": "///Y/76/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6601, "atom1_serNum": 66819, "atom2_serNum": 67244, "donAcc_type": "standard", "distance": 3.085, "atom1_id": "///Y/47/N", "atom2_id": "///Y/102/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6602, "atom1_serNum": 66822, "atom2_serNum": 67241, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///Y/47/O", "atom2_id": "///Y/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6603, "atom1_serNum": 66827, "atom2_serNum": 67030, "donAcc_type": "standard", "distance": 3.729, "atom1_id": "///Y/48/O", "atom2_id": "///Y/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6604, "atom1_serNum": 66833, "atom2_serNum": 67229, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///Y/49/N", "atom2_id": "///Y/100/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6605, "atom1_serNum": 66836, "atom2_serNum": 67226, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///Y/49/O", "atom2_id": "///Y/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6606, "atom1_serNum": 66837, "atom2_serNum": 67016, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///Y/50/N", "atom2_id": "///Y/73/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6607, "atom1_serNum": 66840, "atom2_serNum": 67013, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///Y/50/O", "atom2_id": "///Y/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6608, "atom1_serNum": 66845, "atom2_serNum": 67212, "donAcc_type": "standard", "distance": 3.632, "atom1_id": "///Y/51/N", "atom2_id": "///Y/98/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6609, "atom1_serNum": 66852, "atom2_serNum": 66998, "donAcc_type": "standard", "distance": 3.121, "atom1_id": "///Y/52/N", "atom2_id": "///Y/71/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6610, "atom1_serNum": 66863, "atom2_serNum": 66995, "donAcc_type": "standard", "distance": 3.001, "atom1_id": "///Y/53/O", "atom2_id": "///Y/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6611, "atom1_serNum": 66878, "atom2_serNum": 66985, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///Y/55/N", "atom2_id": "///Y/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6612, "atom1_serNum": 66881, "atom2_serNum": 66982, "donAcc_type": "standard", "distance": 2.524, "atom1_id": "///Y/55/O", "atom2_id": "///Y/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6613, "atom1_serNum": 66889, "atom2_serNum": 66965, "donAcc_type": "standard", "distance": 2.508, "atom1_id": "///Y/57/N", "atom2_id": "///Y/67/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6614, "atom1_serNum": 66892, "atom2_serNum": 66962, "donAcc_type": "standard", "distance": 2.718, "atom1_id": "///Y/57/O", "atom2_id": "///Y/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6615, "atom1_serNum": 66899, "atom2_serNum": 67325, "donAcc_type": "questionable", "distance": 3.342, "atom1_id": "///Y/58/O", "atom2_id": "///Y/114/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6616, "atom1_serNum": 66910, "atom2_serNum": 67325, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///Y/60/N", "atom2_id": "///Y/114/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6617, "atom1_serNum": 66922, "atom2_serNum": 66935, "donAcc_type": "standard", "distance": 2.457, "atom1_id": "///Y/61/O", "atom2_id": "///Y/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6618, "atom1_serNum": 66938, "atom2_serNum": 66949, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///Y/63/O", "atom2_id": "///Y/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6619, "atom1_serNum": 66952, "atom2_serNum": 66971, "donAcc_type": "standard", "distance": 3.252, "atom1_id": "///Y/65/O", "atom2_id": "///Y/67/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6620, "atom1_serNum": 66971, "atom2_serNum": 67329, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///Y/67/NH1", "atom2_id": "///Y/114/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6621, "atom1_serNum": 66976, "atom2_serNum": 67108, "donAcc_type": "standard", "distance": 3.923, "atom1_id": "///Y/68/O", "atom2_id": "///Y/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6622, "atom1_serNum": 66988, "atom2_serNum": 67095, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///Y/70/N", "atom2_id": "///Y/83/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6623, "atom1_serNum": 66991, "atom2_serNum": 67092, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///Y/70/O", "atom2_id": "///Y/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6624, "atom1_serNum": 67006, "atom2_serNum": 67080, "donAcc_type": "standard", "distance": 2.691, "atom1_id": "///Y/72/N", "atom2_id": "///Y/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6625, "atom1_serNum": 67009, "atom2_serNum": 67077, "donAcc_type": "standard", "distance": 2.599, "atom1_id": "///Y/72/O", "atom2_id": "///Y/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6626, "atom1_serNum": 67022, "atom2_serNum": 67062, "donAcc_type": "standard", "distance": 2.505, "atom1_id": "///Y/74/N", "atom2_id": "///Y/79/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6627, "atom1_serNum": 67047, "atom2_serNum": 67053, "donAcc_type": "standard", "distance": 2.637, "atom1_id": "///Y/77/N", "atom2_id": "///Y/77/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6628, "atom1_serNum": 67053, "atom2_serNum": 67055, "donAcc_type": "standard", "distance": 3.240, "atom1_id": "///Y/77/OD1", "atom2_id": "///Y/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6629, "atom1_serNum": 67058, "atom2_serNum": 67076, "donAcc_type": "standard", "distance": 3.533, "atom1_id": "///Y/78/O", "atom2_id": "///Y/80/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6630, "atom1_serNum": 67097, "atom2_serNum": 67370, "donAcc_type": "standard", "distance": 3.426, "atom1_id": "///Y/84/N", "atom2_id": "///Y/120/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6631, "atom1_serNum": 67100, "atom2_serNum": 67387, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///Y/84/O", "atom2_id": "///Y/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6632, "atom1_serNum": 67136, "atom2_serNum": 67138, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///Y/88/OD1", "atom2_id": "///Y/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6633, "atom1_serNum": 67141, "atom2_serNum": 67162, "donAcc_type": "questionable", "distance": 2.843, "atom1_id": "///Y/89/O", "atom2_id": "///Y/92/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6634, "atom1_serNum": 67141, "atom2_serNum": 67163, "donAcc_type": "standard", "distance": 3.343, "atom1_id": "///Y/89/O", "atom2_id": "///Y/92/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6635, "atom1_serNum": 67145, "atom2_serNum": 67164, "donAcc_type": "standard", "distance": 3.200, "atom1_id": "///Y/90/O", "atom2_id": "///Y/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6636, "atom1_serNum": 67151, "atom2_serNum": 67175, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///Y/91/O", "atom2_id": "///Y/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6637, "atom1_serNum": 67162, "atom2_serNum": 67164, "donAcc_type": "standard", "distance": 2.637, "atom1_id": "///Y/92/OD1", "atom2_id": "///Y/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6638, "atom1_serNum": 67183, "atom2_serNum": 67216, "donAcc_type": "standard", "distance": 3.167, "atom1_id": "///Y/95/N", "atom2_id": "///Y/98/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6639, "atom1_serNum": 67190, "atom2_serNum": 67531, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///Y/95/OE1", "atom2_id": "///Y/140/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6640, "atom1_serNum": 67191, "atom2_serNum": 67551, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///Y/95/OE2", "atom2_id": "///Y/142/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6641, "atom1_serNum": 67212, "atom2_serNum": 67226, "donAcc_type": "standard", "distance": 3.285, "atom1_id": "///Y/98/O", "atom2_id": "///Y/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6642, "atom1_serNum": 67220, "atom2_serNum": 67417, "donAcc_type": "standard", "distance": 2.615, "atom1_id": "///Y/99/O", "atom2_id": "///Y/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6643, "atom1_serNum": 67233, "atom2_serNum": 67404, "donAcc_type": "standard", "distance": 2.733, "atom1_id": "///Y/101/N", "atom2_id": "///Y/124/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6644, "atom1_serNum": 67236, "atom2_serNum": 67394, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///Y/101/O", "atom2_id": "///Y/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6645, "atom1_serNum": 67236, "atom2_serNum": 67401, "donAcc_type": "standard", "distance": 3.591, "atom1_id": "///Y/101/O", "atom2_id": "///Y/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6646, "atom1_serNum": 67248, "atom2_serNum": 67381, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///Y/103/N", "atom2_id": "///Y/121/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6647, "atom1_serNum": 67251, "atom2_serNum": 67378, "donAcc_type": "standard", "distance": 2.642, "atom1_id": "///Y/103/O", "atom2_id": "///Y/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6648, "atom1_serNum": 67257, "atom2_serNum": 67359, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///Y/105/N", "atom2_id": "///Y/119/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6649, "atom1_serNum": 67302, "atom2_serNum": 67309, "donAcc_type": "acceptable", "distance": 3.333, "atom1_id": "///Y/110/ND1", "atom2_id": "///Y/111/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6650, "atom1_serNum": 67314, "atom2_serNum": 67330, "donAcc_type": "standard", "distance": 3.355, "atom1_id": "///Y/112/O", "atom2_id": "///Y/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6651, "atom1_serNum": 67322, "atom2_serNum": 67328, "donAcc_type": "standard", "distance": 2.581, "atom1_id": "///Y/114/N", "atom2_id": "///Y/114/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6652, "atom1_serNum": 67397, "atom2_serNum": 67443, "donAcc_type": "standard", "distance": 3.340, "atom1_id": "///Y/123/O", "atom2_id": "///Y/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6653, "atom1_serNum": 67409, "atom2_serNum": 67428, "donAcc_type": "standard", "distance": 3.886, "atom1_id": "///Y/124/NZ", "atom2_id": "///Y/127/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6654, "atom1_serNum": 67410, "atom2_serNum": 67433, "donAcc_type": "standard", "distance": 3.045, "atom1_id": "///Y/125/N", "atom2_id": "///Y/128/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6655, "atom1_serNum": 67413, "atom2_serNum": 67430, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///Y/125/O", "atom2_id": "///Y/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6656, "atom1_serNum": 67440, "atom2_serNum": 67464, "donAcc_type": "standard", "distance": 3.244, "atom1_id": "///Y/129/O", "atom2_id": "///Y/133/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6657, "atom1_serNum": 67442, "atom2_serNum": 67451, "donAcc_type": "acceptable", "distance": 3.185, "atom1_id": "///Y/129/OG", "atom2_id": "///Y/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6658, "atom1_serNum": 67446, "atom2_serNum": 67472, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///Y/130/O", "atom2_id": "///Y/134/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6659, "atom1_serNum": 67454, "atom2_serNum": 67484, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///Y/131/O", "atom2_id": "///Y/135/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6660, "atom1_serNum": 67462, "atom2_serNum": 67493, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///Y/132/O", "atom2_id": "///Y/136/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6661, "atom1_serNum": 67462, "atom2_serNum": 67497, "donAcc_type": "standard", "distance": 3.136, "atom1_id": "///Y/132/O", "atom2_id": "///Y/137/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6662, "atom1_serNum": 67568, "atom2_serNum": 67761, "donAcc_type": "standard", "distance": 3.121, "atom1_id": "///Z/6/N", "atom2_id": "///Z/28/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6663, "atom1_serNum": 67571, "atom2_serNum": 67758, "donAcc_type": "standard", "distance": 3.218, "atom1_id": "///Z/6/O", "atom2_id": "///Z/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6664, "atom1_serNum": 67586, "atom2_serNum": 67743, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///Z/8/O", "atom2_id": "///Z/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6665, "atom1_serNum": 67601, "atom2_serNum": 67731, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///Z/10/N", "atom2_id": "///Z/24/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6666, "atom1_serNum": 67604, "atom2_serNum": 67728, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///Z/10/O", "atom2_id": "///Z/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6667, "atom1_serNum": 67610, "atom2_serNum": 67750, "donAcc_type": "standard", "distance": 2.639, "atom1_id": "///Z/10/NH1", "atom2_id": "///Z/26/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6668, "atom1_serNum": 67635, "atom2_serNum": 67714, "donAcc_type": "questionable", "distance": 3.349, "atom1_id": "///Z/13/O", "atom2_id": "///Z/22/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6669, "atom1_serNum": 67647, "atom2_serNum": 67694, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///Z/15/N", "atom2_id": "///Z/20/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6670, "atom1_serNum": 67650, "atom2_serNum": 67691, "donAcc_type": "standard", "distance": 3.226, "atom1_id": "///Z/15/O", "atom2_id": "///Z/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6671, "atom1_serNum": 67653, "atom2_serNum": 67666, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///Z/15/OD1", "atom2_id": "///Z/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6672, "atom1_serNum": 67677, "atom2_serNum": 68216, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///Z/18/O", "atom2_id": "///Z/85/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6673, "atom1_serNum": 67700, "atom2_serNum": 68143, "donAcc_type": "acceptable", "distance": 3.880, "atom1_id": "///Z/20/NH1", "atom2_id": "///Z/76/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6674, "atom1_serNum": 67702, "atom2_serNum": 68127, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///Z/21/N", "atom2_id": "///Z/75/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6675, "atom1_serNum": 67705, "atom2_serNum": 68124, "donAcc_type": "standard", "distance": 2.688, "atom1_id": "///Z/21/O", "atom2_id": "///Z/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6676, "atom1_serNum": 67711, "atom2_serNum": 67718, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///Z/22/N", "atom2_id": "///Z/22/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6677, "atom1_serNum": 67720, "atom2_serNum": 68115, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///Z/23/N", "atom2_id": "///Z/73/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6678, "atom1_serNum": 67723, "atom2_serNum": 68112, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///Z/23/O", "atom2_id": "///Z/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6679, "atom1_serNum": 67735, "atom2_serNum": 68100, "donAcc_type": "standard", "distance": 2.476, "atom1_id": "///Z/25/N", "atom2_id": "///Z/71/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6680, "atom1_serNum": 67738, "atom2_serNum": 68097, "donAcc_type": "standard", "distance": 2.641, "atom1_id": "///Z/25/O", "atom2_id": "///Z/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6681, "atom1_serNum": 67751, "atom2_serNum": 68086, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///Z/27/N", "atom2_id": "///Z/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6682, "atom1_serNum": 67754, "atom2_serNum": 68083, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///Z/27/O", "atom2_id": "///Z/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6683, "atom1_serNum": 67769, "atom2_serNum": 67772, "donAcc_type": "acceptable", "distance": 2.432, "atom1_id": "///Z/29/O", "atom2_id": "///Z/29/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6684, "atom1_serNum": 67769, "atom2_serNum": 67787, "donAcc_type": "standard", "distance": 3.816, "atom1_id": "///Z/29/O", "atom2_id": "///Z/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6685, "atom1_serNum": 67775, "atom2_serNum": 68088, "donAcc_type": "acceptable", "distance": 3.131, "atom1_id": "///Z/29/NE2", "atom2_id": "///Z/69/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6686, "atom1_serNum": 67783, "atom2_serNum": 68069, "donAcc_type": "standard", "distance": 3.829, "atom1_id": "///Z/31/N", "atom2_id": "///Z/66/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6687, "atom1_serNum": 67806, "atom2_serNum": 68039, "donAcc_type": "acceptable", "distance": 3.557, "atom1_id": "///Z/34/OG1", "atom2_id": "///Z/62/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6688, "atom1_serNum": 67818, "atom2_serNum": 67847, "donAcc_type": "standard", "distance": 3.472, "atom1_id": "///Z/36/O", "atom2_id": "///Z/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6689, "atom1_serNum": 67825, "atom2_serNum": 67855, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///Z/37/O", "atom2_id": "///Z/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6690, "atom1_serNum": 67834, "atom2_serNum": 67866, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///Z/38/O", "atom2_id": "///Z/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6691, "atom1_serNum": 67841, "atom2_serNum": 67875, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///Z/39/O", "atom2_id": "///Z/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6692, "atom1_serNum": 67850, "atom2_serNum": 67884, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///Z/40/O", "atom2_id": "///Z/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6693, "atom1_serNum": 67858, "atom2_serNum": 67892, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///Z/41/O", "atom2_id": "///Z/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6694, "atom1_serNum": 67862, "atom2_serNum": 67974, "donAcc_type": "standard", "distance": 3.354, "atom1_id": "///Z/41/NE", "atom2_id": "///Z/55/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6695, "atom1_serNum": 67865, "atom2_serNum": 67952, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///Z/41/NH2", "atom2_id": "///Z/52/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6696, "atom1_serNum": 67869, "atom2_serNum": 67897, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///Z/42/O", "atom2_id": "///Z/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6697, "atom1_serNum": 67878, "atom2_serNum": 67906, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///Z/43/O", "atom2_id": "///Z/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6698, "atom1_serNum": 67887, "atom2_serNum": 67914, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///Z/44/O", "atom2_id": "///Z/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6699, "atom1_serNum": 67895, "atom2_serNum": 67926, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///Z/45/O", "atom2_id": "///Z/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6700, "atom1_serNum": 67895, "atom2_serNum": 67935, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///Z/45/O", "atom2_id": "///Z/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6701, "atom1_serNum": 67945, "atom2_serNum": 67964, "donAcc_type": "standard", "distance": 3.347, "atom1_id": "///Z/51/O", "atom2_id": "///Z/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6702, "atom1_serNum": 67967, "atom2_serNum": 68132, "donAcc_type": "standard", "distance": 3.287, "atom1_id": "///Z/54/O", "atom2_id": "///Z/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6703, "atom1_serNum": 67979, "atom2_serNum": 68119, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///Z/56/N", "atom2_id": "///Z/74/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6704, "atom1_serNum": 67982, "atom2_serNum": 68116, "donAcc_type": "standard", "distance": 2.729, "atom1_id": "///Z/56/O", "atom2_id": "///Z/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6705, "atom1_serNum": 67997, "atom2_serNum": 68104, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///Z/58/N", "atom2_id": "///Z/72/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6706, "atom1_serNum": 68000, "atom2_serNum": 68101, "donAcc_type": "standard", "distance": 3.071, "atom1_id": "///Z/58/O", "atom2_id": "///Z/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6707, "atom1_serNum": 68011, "atom2_serNum": 68093, "donAcc_type": "questionable", "distance": 3.154, "atom1_id": "///Z/59/O", "atom2_id": "///Z/70/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6708, "atom1_serNum": 68023, "atom2_serNum": 68093, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///Z/61/N", "atom2_id": "///Z/70/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6709, "atom1_serNum": 68026, "atom2_serNum": 68090, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///Z/61/O", "atom2_id": "///Z/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6710, "atom1_serNum": 68041, "atom2_serNum": 68077, "donAcc_type": "standard", "distance": 3.170, "atom1_id": "///Z/63/N", "atom2_id": "///Z/68/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6711, "atom1_serNum": 68044, "atom2_serNum": 68062, "donAcc_type": "standard", "distance": 3.250, "atom1_id": "///Z/63/O", "atom2_id": "///Z/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6712, "atom1_serNum": 68044, "atom2_serNum": 68066, "donAcc_type": "standard", "distance": 3.350, "atom1_id": "///Z/63/O", "atom2_id": "///Z/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6713, "atom1_serNum": 68050, "atom2_serNum": 68095, "donAcc_type": "acceptable", "distance": 2.742, "atom1_id": "///Z/63/NE2", "atom2_id": "///Z/70/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6714, "atom1_serNum": 68086, "atom2_serNum": 68088, "donAcc_type": "acceptable", "distance": 3.096, "atom1_id": "///Z/69/O", "atom2_id": "///Z/69/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6715, "atom1_serNum": 68143, "atom2_serNum": 68212, "donAcc_type": "acceptable", "distance": 2.810, "atom1_id": "///Z/76/OH", "atom2_id": "///Z/85/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6716, "atom1_serNum": 68155, "atom2_serNum": 68186, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///Z/78/O", "atom2_id": "///Z/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6717, "atom1_serNum": 68161, "atom2_serNum": 68191, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///Z/79/O", "atom2_id": "///Z/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6718, "atom1_serNum": 68166, "atom2_serNum": 68172, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///Z/80/N", "atom2_id": "///Z/80/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6719, "atom1_serNum": 68169, "atom2_serNum": 68200, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///Z/80/O", "atom2_id": "///Z/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6720, "atom1_serNum": 68172, "atom2_serNum": 68174, "donAcc_type": "standard", "distance": 2.483, "atom1_id": "///Z/80/OD1", "atom2_id": "///Z/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6721, "atom1_serNum": 68177, "atom2_serNum": 68209, "donAcc_type": "standard", "distance": 3.377, "atom1_id": "///Z/81/O", "atom2_id": "///Z/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6722, "atom1_serNum": 68225, "atom2_serNum": 68261, "donAcc_type": "standard", "distance": 3.794, "atom1_id": "///Z/86/OE2", "atom2_id": "///Z/90/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6723, "atom1_serNum": 68229, "atom2_serNum": 68263, "donAcc_type": "standard", "distance": 3.695, "atom1_id": "///Z/87/O", "atom2_id": "///Z/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6724, "atom1_serNum": 68236, "atom2_serNum": 68271, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///Z/88/O", "atom2_id": "///Z/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6725, "atom1_serNum": 68245, "atom2_serNum": 68276, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///Z/89/O", "atom2_id": "///Z/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6726, "atom1_serNum": 68255, "atom2_serNum": 68287, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///Z/90/O", "atom2_id": "///Z/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6727, "atom1_serNum": 68266, "atom2_serNum": 68297, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///Z/91/O", "atom2_id": "///Z/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6728, "atom1_serNum": 68266, "atom2_serNum": 68301, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///Z/91/O", "atom2_id": "///Z/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6729, "atom1_serNum": 68328, "atom2_serNum": 68356, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///Z/98/OE1", "atom2_id": "///Z/101/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6730, "atom1_serNum": 68338, "atom2_serNum": 68342, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///Z/99/NZ", "atom2_id": "///Z/100/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6731, "atom1_serNum": 68347, "atom2_serNum": 68408, "donAcc_type": "questionable", "distance": 3.086, "atom1_id": "///Z/100/NZ", "atom2_id": "///Z/107/NH1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6732, "atom1_serNum": 68367, "atom2_serNum": 68399, "donAcc_type": "standard", "distance": 3.196, "atom1_id": "///Z/103/O", "atom2_id": "///Z/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6733, "atom1_serNum": 68373, "atom2_serNum": 68410, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///Z/104/O", "atom2_id": "///Z/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6734, "atom1_serNum": 68384, "atom2_serNum": 68419, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///Z/105/O", "atom2_id": "///Z/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6735, "atom1_serNum": 68393, "atom2_serNum": 68428, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///Z/106/O", "atom2_id": "///Z/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6736, "atom1_serNum": 68402, "atom2_serNum": 68439, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///Z/107/O", "atom2_id": "///Z/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6737, "atom1_serNum": 68413, "atom2_serNum": 68448, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///Z/108/O", "atom2_id": "///Z/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6738, "atom1_serNum": 68413, "atom2_serNum": 68455, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///Z/108/O", "atom2_id": "///Z/112/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6739, "atom1_serNum": 68422, "atom2_serNum": 68456, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///Z/109/O", "atom2_id": "///Z/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6740, "atom1_serNum": 68431, "atom2_serNum": 68467, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///Z/110/O", "atom2_id": "///Z/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6741, "atom1_serNum": 68442, "atom2_serNum": 68475, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///Z/111/O", "atom2_id": "///Z/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6742, "atom1_serNum": 68451, "atom2_serNum": 68484, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///Z/112/O", "atom2_id": "///Z/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6743, "atom1_serNum": 68470, "atom2_serNum": 68493, "donAcc_type": "standard", "distance": 3.302, "atom1_id": "///Z/114/O", "atom2_id": "///Z/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6744, "atom1_serNum": 68470, "atom2_serNum": 68496, "donAcc_type": "questionable", "distance": 2.844, "atom1_id": "///Z/114/O", "atom2_id": "///Z/117/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6745, "atom1_serNum": 68470, "atom2_serNum": 68535, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///Z/114/O", "atom2_id": "///Z/122/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6746, "atom1_serNum": 68496, "atom2_serNum": 68535, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///Z/117/O", "atom2_id": "///Z/122/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6747, "atom1_serNum": 68514, "atom2_serNum": 68527, "donAcc_type": "standard", "distance": 3.070, "atom1_id": "///Z/119/O", "atom2_id": "///Z/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6748, "atom1_serNum": 68518, "atom2_serNum": 68536, "donAcc_type": "standard", "distance": 3.374, "atom1_id": "///Z/120/O", "atom2_id": "///Z/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6749, "atom1_serNum": 68525, "atom2_serNum": 68549, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///Z/121/O", "atom2_id": "///Z/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6750, "atom1_serNum": 68596, "atom2_serNum": 68610, "donAcc_type": "standard", "distance": 3.036, "atom1_id": "///a/42/O", "atom2_id": "///a/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6751, "atom1_serNum": 68634, "atom2_serNum": 68887, "donAcc_type": "standard", "distance": 3.689, "atom1_id": "///a/47/N", "atom2_id": "///a/78/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6752, "atom1_serNum": 68668, "atom2_serNum": 68695, "donAcc_type": "acceptable", "distance": 2.622, "atom1_id": "///a/51/N", "atom2_id": "///a/54/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6753, "atom1_serNum": 68671, "atom2_serNum": 68697, "donAcc_type": "standard", "distance": 3.424, "atom1_id": "///a/51/O", "atom2_id": "///a/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6754, "atom1_serNum": 68688, "atom2_serNum": 68717, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///a/53/O", "atom2_id": "///a/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6755, "atom1_serNum": 68693, "atom2_serNum": 68726, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///a/54/O", "atom2_id": "///a/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6756, "atom1_serNum": 68700, "atom2_serNum": 68734, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///a/55/O", "atom2_id": "///a/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6757, "atom1_serNum": 68712, "atom2_serNum": 68740, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///a/56/O", "atom2_id": "///a/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6758, "atom1_serNum": 68720, "atom2_serNum": 68749, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///a/57/O", "atom2_id": "///a/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6759, "atom1_serNum": 68720, "atom2_serNum": 68757, "donAcc_type": "questionable", "distance": 2.731, "atom1_id": "///a/57/O", "atom2_id": "///a/61/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6760, "atom1_serNum": 68729, "atom2_serNum": 68758, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///a/58/O", "atom2_id": "///a/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6761, "atom1_serNum": 68743, "atom2_serNum": 68779, "donAcc_type": "standard", "distance": 3.363, "atom1_id": "///a/60/O", "atom2_id": "///a/64/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6762, "atom1_serNum": 68761, "atom2_serNum": 68772, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///a/62/O", "atom2_id": "///a/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6763, "atom1_serNum": 68761, "atom2_serNum": 68780, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///a/62/O", "atom2_id": "///a/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6764, "atom1_serNum": 68768, "atom2_serNum": 69152, "donAcc_type": "standard", "distance": 3.770, "atom1_id": "///a/63/O", "atom2_id": "///a/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6765, "atom1_serNum": 68783, "atom2_serNum": 69141, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///a/65/O", "atom2_id": "///a/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6766, "atom1_serNum": 68791, "atom2_serNum": 68875, "donAcc_type": "acceptable", "distance": 2.531, "atom1_id": "///a/65/OH", "atom2_id": "///a/76/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6767, "atom1_serNum": 68795, "atom2_serNum": 69139, "donAcc_type": "acceptable", "distance": 2.677, "atom1_id": "///a/66/O", "atom2_id": "///a/110/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6768, "atom1_serNum": 68809, "atom2_serNum": 69125, "donAcc_type": "standard", "distance": 2.611, "atom1_id": "///a/68/N", "atom2_id": "///a/109/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6769, "atom1_serNum": 68812, "atom2_serNum": 69122, "donAcc_type": "standard", "distance": 2.636, "atom1_id": "///a/68/O", "atom2_id": "///a/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6770, "atom1_serNum": 68820, "atom2_serNum": 68843, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///a/69/O", "atom2_id": "///a/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6771, "atom1_serNum": 68827, "atom2_serNum": 68850, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///a/70/O", "atom2_id": "///a/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6772, "atom1_serNum": 68827, "atom2_serNum": 68855, "donAcc_type": "acceptable", "distance": 2.655, "atom1_id": "///a/70/O", "atom2_id": "///a/74/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6773, "atom1_serNum": 68834, "atom2_serNum": 68856, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///a/71/O", "atom2_id": "///a/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6774, "atom1_serNum": 68839, "atom2_serNum": 68865, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///a/72/O", "atom2_id": "///a/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6775, "atom1_serNum": 68846, "atom2_serNum": 68876, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///a/73/O", "atom2_id": "///a/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6776, "atom1_serNum": 68853, "atom2_serNum": 68884, "donAcc_type": "standard", "distance": 3.012, "atom1_id": "///a/74/O", "atom2_id": "///a/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6777, "atom1_serNum": 68853, "atom2_serNum": 68893, "donAcc_type": "standard", "distance": 3.435, "atom1_id": "///a/74/O", "atom2_id": "///a/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6778, "atom1_serNum": 68855, "atom2_serNum": 68896, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///a/74/OG", "atom2_id": "///a/79/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6779, "atom1_serNum": 68904, "atom2_serNum": 68930, "donAcc_type": "standard", "distance": 2.621, "atom1_id": "///a/80/O", "atom2_id": "///a/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6780, "atom1_serNum": 68915, "atom2_serNum": 68935, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///a/81/O", "atom2_id": "///a/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6781, "atom1_serNum": 68919, "atom2_serNum": 68946, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///a/82/O", "atom2_id": "///a/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6782, "atom1_serNum": 68925, "atom2_serNum": 68951, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///a/83/O", "atom2_id": "///a/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6783, "atom1_serNum": 68933, "atom2_serNum": 68956, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///a/84/O", "atom2_id": "///a/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6784, "atom1_serNum": 68938, "atom2_serNum": 68964, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///a/85/O", "atom2_id": "///a/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6785, "atom1_serNum": 68949, "atom2_serNum": 68973, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///a/86/O", "atom2_id": "///a/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6786, "atom1_serNum": 68954, "atom2_serNum": 68982, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///a/87/O", "atom2_id": "///a/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6787, "atom1_serNum": 68959, "atom2_serNum": 68990, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///a/88/O", "atom2_id": "///a/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6788, "atom1_serNum": 68967, "atom2_serNum": 68998, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///a/89/O", "atom2_id": "///a/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6789, "atom1_serNum": 68967, "atom2_serNum": 69003, "donAcc_type": "acceptable", "distance": 2.866, "atom1_id": "///a/89/O", "atom2_id": "///a/93/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6790, "atom1_serNum": 68976, "atom2_serNum": 69004, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///a/90/O", "atom2_id": "///a/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6791, "atom1_serNum": 68985, "atom2_serNum": 69013, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///a/91/O", "atom2_id": "///a/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6792, "atom1_serNum": 68985, "atom2_serNum": 69017, "donAcc_type": "standard", "distance": 3.304, "atom1_id": "///a/91/O", "atom2_id": "///a/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6793, "atom1_serNum": 68993, "atom2_serNum": 69013, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///a/92/O", "atom2_id": "///a/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6794, "atom1_serNum": 69020, "atom2_serNum": 69159, "donAcc_type": "standard", "distance": 2.354, "atom1_id": "///a/96/O", "atom2_id": "///a/112/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6795, "atom1_serNum": 69036, "atom2_serNum": 69134, "donAcc_type": "standard", "distance": 3.716, "atom1_id": "///a/98/O", "atom2_id": "///a/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6796, "atom1_serNum": 69050, "atom2_serNum": 69117, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///a/100/N", "atom2_id": "///a/108/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6797, "atom1_serNum": 69060, "atom2_serNum": 69114, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///a/101/O", "atom2_id": "///a/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6798, "atom1_serNum": 69165, "atom2_serNum": 69179, "donAcc_type": "acceptable", "distance": 2.967, "atom1_id": "///a/113/OG1", "atom2_id": "///a/115/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6799, "atom1_serNum": 69196, "atom2_serNum": 69220, "donAcc_type": "standard", "distance": 3.874, "atom1_id": "///b/3/NZ", "atom2_id": "///b/6/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6800, "atom1_serNum": 69228, "atom2_serNum": 69234, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///b/7/N", "atom2_id": "///b/7/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6801, "atom1_serNum": 69235, "atom2_serNum": 69251, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///b/7/ND2", "atom2_id": "///b/10/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6802, "atom1_serNum": 69255, "atom2_serNum": 69431, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///b/10/NE", "atom2_id": "///b/33/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6803, "atom1_serNum": 69262, "atom2_serNum": 69273, "donAcc_type": "standard", "distance": 3.220, "atom1_id": "///b/11/O", "atom2_id": "///b/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6804, "atom1_serNum": 69321, "atom2_serNum": 69416, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///b/19/O", "atom2_id": "///b/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6805, "atom1_serNum": 69334, "atom2_serNum": 69405, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///b/21/N", "atom2_id": "///b/30/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6806, "atom1_serNum": 69337, "atom2_serNum": 69402, "donAcc_type": "standard", "distance": 3.108, "atom1_id": "///b/21/O", "atom2_id": "///b/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6807, "atom1_serNum": 69349, "atom2_serNum": 69383, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///b/22/NE", "atom2_id": "///b/27/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6808, "atom1_serNum": 69352, "atom2_serNum": 69383, "donAcc_type": "standard", "distance": 2.508, "atom1_id": "///b/22/NH2", "atom2_id": "///b/27/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6809, "atom1_serNum": 69353, "atom2_serNum": 69388, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///b/23/N", "atom2_id": "///b/28/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6810, "atom1_serNum": 69359, "atom2_serNum": 69738, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///b/24/N", "atom2_id": "///b/72/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6811, "atom1_serNum": 69364, "atom2_serNum": 69738, "donAcc_type": "acceptable", "distance": 3.115, "atom1_id": "///b/24/OG1", "atom2_id": "///b/72/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6812, "atom1_serNum": 69412, "atom2_serNum": 69442, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///b/31/O", "atom2_id": "///b/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6813, "atom1_serNum": 69431, "atom2_serNum": 69433, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///b/33/OD1", "atom2_id": "///b/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6814, "atom1_serNum": 69445, "atom2_serNum": 69455, "donAcc_type": "standard", "distance": 3.284, "atom1_id": "///b/35/O", "atom2_id": "///b/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6815, "atom1_serNum": 69447, "atom2_serNum": 69748, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///b/36/N", "atom2_id": "///b/73/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6816, "atom1_serNum": 69450, "atom2_serNum": 69745, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///b/36/O", "atom2_id": "///b/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6817, "atom1_serNum": 69464, "atom2_serNum": 69730, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///b/38/N", "atom2_id": "///b/71/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6818, "atom1_serNum": 69467, "atom2_serNum": 69727, "donAcc_type": "standard", "distance": 2.604, "atom1_id": "///b/38/O", "atom2_id": "///b/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6819, "atom1_serNum": 69502, "atom2_serNum": 69691, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///b/42/O", "atom2_id": "///b/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6820, "atom1_serNum": 69518, "atom2_serNum": 69678, "donAcc_type": "standard", "distance": 3.582, "atom1_id": "///b/44/N", "atom2_id": "///b/65/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6821, "atom1_serNum": 69555, "atom2_serNum": 69583, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///b/49/O", "atom2_id": "///b/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6822, "atom1_serNum": 69560, "atom2_serNum": 69591, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///b/50/O", "atom2_id": "///b/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6823, "atom1_serNum": 69567, "atom2_serNum": 69597, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///b/51/O", "atom2_id": "///b/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6824, "atom1_serNum": 69567, "atom2_serNum": 69604, "donAcc_type": "questionable", "distance": 2.556, "atom1_id": "///b/51/O", "atom2_id": "///b/55/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6825, "atom1_serNum": 69573, "atom2_serNum": 71110, "donAcc_type": "standard", "distance": 3.893, "atom1_id": "///b/51/NH1", "atom2_id": "///d/62/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6826, "atom1_serNum": 69578, "atom2_serNum": 69609, "donAcc_type": "questionable", "distance": 2.965, "atom1_id": "///b/52/O", "atom2_id": "///b/56/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6827, "atom1_serNum": 69594, "atom2_serNum": 69616, "donAcc_type": "acceptable", "distance": 3.063, "atom1_id": "///b/54/O", "atom2_id": "///b/57/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6828, "atom1_serNum": 69597, "atom2_serNum": 69604, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///b/55/N", "atom2_id": "///b/55/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6829, "atom1_serNum": 69605, "atom2_serNum": 71110, "donAcc_type": "questionable", "distance": 2.932, "atom1_id": "///b/55/OE2", "atom2_id": "///d/62/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6830, "atom1_serNum": 69616, "atom2_serNum": 69627, "donAcc_type": "acceptable", "distance": 2.759, "atom1_id": "///b/57/OG", "atom2_id": "///b/59/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6831, "atom1_serNum": 69760, "atom2_serNum": 69782, "donAcc_type": "standard", "distance": 2.498, "atom1_id": "///b/74/O", "atom2_id": "///b/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6832, "atom1_serNum": 69766, "atom2_serNum": 69787, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///b/75/O", "atom2_id": "///b/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6833, "atom1_serNum": 69773, "atom2_serNum": 69795, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///b/76/O", "atom2_id": "///b/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6834, "atom1_serNum": 69779, "atom2_serNum": 69805, "donAcc_type": "standard", "distance": 3.185, "atom1_id": "///b/77/O", "atom2_id": "///b/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6835, "atom1_serNum": 69779, "atom2_serNum": 69810, "donAcc_type": "acceptable", "distance": 2.909, "atom1_id": "///b/77/O", "atom2_id": "///b/81/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6836, "atom1_serNum": 69785, "atom2_serNum": 69820, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///b/78/O", "atom2_id": "///b/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6837, "atom1_serNum": 69790, "atom2_serNum": 69811, "donAcc_type": "standard", "distance": 3.034, "atom1_id": "///b/79/O", "atom2_id": "///b/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6838, "atom1_serNum": 69845, "atom2_serNum": 69851, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///b/86/N", "atom2_id": "///b/86/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6839, "atom1_serNum": 69863, "atom2_serNum": 69918, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///b/87/NH2", "atom2_id": "///b/94/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6840, "atom1_serNum": 69867, "atom2_serNum": 69895, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///b/88/O", "atom2_id": "///b/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6841, "atom1_serNum": 69881, "atom2_serNum": 69889, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///b/90/N", "atom2_id": "///b/90/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6842, "atom1_serNum": 69909, "atom2_serNum": 69923, "donAcc_type": "standard", "distance": 3.403, "atom1_id": "///b/93/O", "atom2_id": "///b/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6843, "atom1_serNum": 69937, "atom2_serNum": 69939, "donAcc_type": "acceptable", "distance": 3.018, "atom1_id": "///b/96/O", "atom2_id": "///b/96/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6844, "atom1_serNum": 69969, "atom2_serNum": 69987, "donAcc_type": "standard", "distance": 3.635, "atom1_id": "///b/100/NE", "atom2_id": "///b/102/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6845, "atom1_serNum": 70031, "atom2_serNum": 70041, "donAcc_type": "standard", "distance": 3.360, "atom1_id": "///c/6/OD1", "atom2_id": "///c/8/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6846, "atom1_serNum": 70069, "atom2_serNum": 70097, "donAcc_type": "standard", "distance": 3.116, "atom1_id": "///c/11/O", "atom2_id": "///c/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6847, "atom1_serNum": 70075, "atom2_serNum": 70106, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///c/12/O", "atom2_id": "///c/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6848, "atom1_serNum": 70079, "atom2_serNum": 70087, "donAcc_type": "standard", "distance": 2.660, "atom1_id": "///c/13/N", "atom2_id": "///c/13/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6849, "atom1_serNum": 70082, "atom2_serNum": 70115, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///c/13/O", "atom2_id": "///c/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6850, "atom1_serNum": 70091, "atom2_serNum": 70126, "donAcc_type": "standard", "distance": 3.319, "atom1_id": "///c/14/O", "atom2_id": "///c/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6851, "atom1_serNum": 70100, "atom2_serNum": 70179, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///c/15/O", "atom2_id": "///c/23/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6852, "atom1_serNum": 70134, "atom2_serNum": 70166, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///c/18/NZ", "atom2_id": "///c/22/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6853, "atom1_serNum": 70138, "atom2_serNum": 70163, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///c/19/O", "atom2_id": "///c/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6854, "atom1_serNum": 70148, "atom2_serNum": 70207, "donAcc_type": "standard", "distance": 3.842, "atom1_id": "///c/20/O", "atom2_id": "///c/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6855, "atom1_serNum": 70162, "atom2_serNum": 70205, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///c/21/NZ", "atom2_id": "///c/26/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6856, "atom1_serNum": 70181, "atom2_serNum": 70210, "donAcc_type": "standard", "distance": 2.556, "atom1_id": "///c/23/NH1", "atom2_id": "///c/27/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6857, "atom1_serNum": 70194, "atom2_serNum": 70207, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///c/25/O", "atom2_id": "///c/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6858, "atom1_serNum": 70226, "atom2_serNum": 70228, "donAcc_type": "standard", "distance": 3.260, "atom1_id": "///c/29/OD1", "atom2_id": "///c/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6859, "atom1_serNum": 70237, "atom2_serNum": 70373, "donAcc_type": "standard", "distance": 3.222, "atom1_id": "///c/31/O", "atom2_id": "///c/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6860, "atom1_serNum": 70237, "atom2_serNum": 70378, "donAcc_type": "acceptable", "distance": 2.278, "atom1_id": "///c/31/O", "atom2_id": "///c/48/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6861, "atom1_serNum": 70257, "atom2_serNum": 70358, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///c/33/N", "atom2_id": "///c/46/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6862, "atom1_serNum": 70260, "atom2_serNum": 70355, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///c/33/O", "atom2_id": "///c/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6863, "atom1_serNum": 70265, "atom2_serNum": 70271, "donAcc_type": "standard", "distance": 2.832, "atom1_id": "///c/34/N", "atom2_id": "///c/34/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6864, "atom1_serNum": 70268, "atom2_serNum": 76717, "donAcc_type": "standard", "distance": 3.674, "atom1_id": "///c/34/O", "atom2_id": "///z/233/N2", "atom_pair": "O:N", "residue_pair": "aa:nt" }, { "index": 6865, "atom1_serNum": 70271, "atom2_serNum": 70596, "donAcc_type": "standard", "distance": 2.475, "atom1_id": "///c/34/OD1", "atom2_id": "///c/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6866, "atom1_serNum": 70272, "atom2_serNum": 76707, "donAcc_type": "acceptable", "distance": 2.407, "atom1_id": "///c/34/OD2", "atom2_id": "///z/233/O2'", "atom_pair": "O:O", "residue_pair": "aa:nt" }, { "index": 6867, "atom1_serNum": 70276, "atom2_serNum": 70341, "donAcc_type": "standard", "distance": 3.529, "atom1_id": "///c/35/O", "atom2_id": "///c/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6868, "atom1_serNum": 70280, "atom2_serNum": 70582, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///c/36/N", "atom2_id": "///c/78/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6869, "atom1_serNum": 70283, "atom2_serNum": 70579, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///c/36/O", "atom2_id": "///c/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6870, "atom1_serNum": 70292, "atom2_serNum": 70309, "donAcc_type": "questionable", "distance": 2.665, "atom1_id": "///c/37/O", "atom2_id": "///c/40/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6871, "atom1_serNum": 70298, "atom2_serNum": 70323, "donAcc_type": "acceptable", "distance": 3.830, "atom1_id": "///c/38/O", "atom2_id": "///c/41/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6872, "atom1_serNum": 70353, "atom2_serNum": 70626, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///c/45/OG1", "atom2_id": "///c/82/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6873, "atom1_serNum": 70376, "atom2_serNum": 70529, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///c/48/O", "atom2_id": "///c/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6874, "atom1_serNum": 70385, "atom2_serNum": 70519, "donAcc_type": "acceptable", "distance": 2.740, "atom1_id": "///c/49/ND1", "atom2_id": "///c/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6875, "atom1_serNum": 70420, "atom2_serNum": 70475, "donAcc_type": "standard", "distance": 3.320, "atom1_id": "///c/54/O", "atom2_id": "///c/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6876, "atom1_serNum": 70432, "atom2_serNum": 70464, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///c/56/N", "atom2_id": "///c/61/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6877, "atom1_serNum": 70435, "atom2_serNum": 70445, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///c/56/O", "atom2_id": "///c/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6878, "atom1_serNum": 70435, "atom2_serNum": 70449, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///c/56/O", "atom2_id": "///c/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6879, "atom1_serNum": 70458, "atom2_serNum": 70466, "donAcc_type": "acceptable", "distance": 2.460, "atom1_id": "///c/60/O", "atom2_id": "///c/61/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6880, "atom1_serNum": 70471, "atom2_serNum": 70558, "donAcc_type": "acceptable", "distance": 2.600, "atom1_id": "///c/62/O", "atom2_id": "///c/74/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6881, "atom1_serNum": 70478, "atom2_serNum": 70553, "donAcc_type": "standard", "distance": 3.001, "atom1_id": "///c/63/O", "atom2_id": "///c/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6882, "atom1_serNum": 70478, "atom2_serNum": 70558, "donAcc_type": "acceptable", "distance": 2.427, "atom1_id": "///c/63/O", "atom2_id": "///c/74/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6883, "atom1_serNum": 70492, "atom2_serNum": 70534, "donAcc_type": "standard", "distance": 3.380, "atom1_id": "///c/65/O", "atom2_id": "///c/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6884, "atom1_serNum": 70510, "atom2_serNum": 70523, "donAcc_type": "acceptable", "distance": 2.193, "atom1_id": "///c/67/OG1", "atom2_id": "///c/70/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6885, "atom1_serNum": 70532, "atom2_serNum": 70545, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///c/71/O", "atom2_id": "///c/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6886, "atom1_serNum": 70560, "atom2_serNum": 70567, "donAcc_type": "standard", "distance": 2.613, "atom1_id": "///c/75/N", "atom2_id": "///c/75/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6887, "atom1_serNum": 70582, "atom2_serNum": 70584, "donAcc_type": "acceptable", "distance": 2.863, "atom1_id": "///c/78/O", "atom2_id": "///c/78/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6888, "atom1_serNum": 70584, "atom2_serNum": 76717, "donAcc_type": "acceptable", "distance": 3.388, "atom1_id": "///c/78/OG", "atom2_id": "///z/233/N2", "atom_pair": "O:N", "residue_pair": "aa:nt" }, { "index": 6889, "atom1_serNum": 70605, "atom2_serNum": 76786, "donAcc_type": "standard", "distance": 3.941, "atom1_id": "///c/80/NH1", "atom2_id": "///z/237/O5'", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 6890, "atom1_serNum": 70634, "atom2_serNum": 70646, "donAcc_type": "questionable", "distance": 3.347, "atom1_id": "///c/83/OE1", "atom2_id": "///c/84/OXT", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6891, "atom1_serNum": 70651, "atom2_serNum": 70660, "donAcc_type": "acceptable", "distance": 2.536, "atom1_id": "///d/3/O", "atom2_id": "///d/4/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6892, "atom1_serNum": 70658, "atom2_serNum": 70660, "donAcc_type": "acceptable", "distance": 2.786, "atom1_id": "///d/4/O", "atom2_id": "///d/4/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6893, "atom1_serNum": 70703, "atom2_serNum": 71075, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///d/10/N", "atom2_id": "///d/58/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6894, "atom1_serNum": 70706, "atom2_serNum": 71072, "donAcc_type": "standard", "distance": 2.559, "atom1_id": "///d/10/O", "atom2_id": "///d/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6895, "atom1_serNum": 70715, "atom2_serNum": 70895, "donAcc_type": "standard", "distance": 3.962, "atom1_id": "///d/11/O", "atom2_id": "///d/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6896, "atom1_serNum": 70723, "atom2_serNum": 71057, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///d/12/O", "atom2_id": "///d/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6897, "atom1_serNum": 70725, "atom2_serNum": 70878, "donAcc_type": "standard", "distance": 2.469, "atom1_id": "///d/13/N", "atom2_id": "///d/33/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6898, "atom1_serNum": 70728, "atom2_serNum": 70875, "donAcc_type": "standard", "distance": 2.527, "atom1_id": "///d/13/O", "atom2_id": "///d/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6899, "atom1_serNum": 70736, "atom2_serNum": 71045, "donAcc_type": "standard", "distance": 3.116, "atom1_id": "///d/14/N", "atom2_id": "///d/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6900, "atom1_serNum": 70739, "atom2_serNum": 71038, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///d/14/O", "atom2_id": "///d/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6901, "atom1_serNum": 70743, "atom2_serNum": 70860, "donAcc_type": "standard", "distance": 3.709, "atom1_id": "///d/15/N", "atom2_id": "///d/31/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6902, "atom1_serNum": 70753, "atom2_serNum": 70857, "donAcc_type": "standard", "distance": 3.225, "atom1_id": "///d/16/O", "atom2_id": "///d/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6903, "atom1_serNum": 70766, "atom2_serNum": 70844, "donAcc_type": "standard", "distance": 2.703, "atom1_id": "///d/18/N", "atom2_id": "///d/29/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6904, "atom1_serNum": 70777, "atom2_serNum": 70841, "donAcc_type": "standard", "distance": 3.636, "atom1_id": "///d/19/O", "atom2_id": "///d/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6905, "atom1_serNum": 70785, "atom2_serNum": 70818, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///d/20/NE", "atom2_id": "///d/25/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6906, "atom1_serNum": 70788, "atom2_serNum": 70818, "donAcc_type": "standard", "distance": 2.620, "atom1_id": "///d/20/NH2", "atom2_id": "///d/25/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6907, "atom1_serNum": 70789, "atom2_serNum": 70831, "donAcc_type": "standard", "distance": 2.581, "atom1_id": "///d/21/N", "atom2_id": "///d/27/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6908, "atom1_serNum": 70792, "atom2_serNum": 70828, "donAcc_type": "standard", "distance": 3.303, "atom1_id": "///d/21/O", "atom2_id": "///d/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6909, "atom1_serNum": 70806, "atom2_serNum": 70826, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///d/24/N", "atom2_id": "///d/26/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6910, "atom1_serNum": 70813, "atom2_serNum": 70827, "donAcc_type": "standard", "distance": 2.607, "atom1_id": "///d/24/OE1", "atom2_id": "///d/26/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6911, "atom1_serNum": 70819, "atom2_serNum": 70826, "donAcc_type": "standard", "distance": 2.592, "atom1_id": "///d/26/N", "atom2_id": "///d/26/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6912, "atom1_serNum": 70834, "atom2_serNum": 70987, "donAcc_type": "standard", "distance": 3.471, "atom1_id": "///d/28/N", "atom2_id": "///d/46/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6913, "atom1_serNum": 70837, "atom2_serNum": 70984, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///d/28/O", "atom2_id": "///d/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6914, "atom1_serNum": 70849, "atom2_serNum": 78791, "donAcc_type": "standard", "distance": 3.884, "atom1_id": "///d/29/NE2", "atom2_id": "///z/330/N1", "atom_pair": "N:N", "residue_pair": "aa:nt" }, { "index": 6915, "atom1_serNum": 70850, "atom2_serNum": 70968, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///d/30/N", "atom2_id": "///d/44/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6916, "atom1_serNum": 70853, "atom2_serNum": 70965, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///d/30/O", "atom2_id": "///d/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6917, "atom1_serNum": 70867, "atom2_serNum": 78755, "donAcc_type": "standard", "distance": 3.036, "atom1_id": "///d/31/NH2", "atom2_id": "///z/329/OP2", "atom_pair": "N:O", "residue_pair": "aa:nt" }, { "index": 6918, "atom1_serNum": 70868, "atom2_serNum": 70952, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///d/32/N", "atom2_id": "///d/42/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6919, "atom1_serNum": 70871, "atom2_serNum": 70949, "donAcc_type": "standard", "distance": 3.603, "atom1_id": "///d/32/O", "atom2_id": "///d/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6920, "atom1_serNum": 70883, "atom2_serNum": 70924, "donAcc_type": "acceptable", "distance": 3.516, "atom1_id": "///d/33/OE2", "atom2_id": "///d/38/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6921, "atom1_serNum": 70909, "atom2_serNum": 78667, "donAcc_type": "questionable", "distance": 2.836, "atom1_id": "///d/36/OD1", "atom2_id": "///z/324/O4", "atom_pair": "O:O", "residue_pair": "aa:nt" }, { "index": 6922, "atom1_serNum": 70917, "atom2_serNum": 78664, "donAcc_type": "questionable", "distance": 2.867, "atom1_id": "///d/37/OD1", "atom2_id": "///z/324/O2", "atom_pair": "O:O", "residue_pair": "aa:nt" }, { "index": 6923, "atom1_serNum": 70918, "atom2_serNum": 70932, "donAcc_type": "standard", "distance": 3.506, "atom1_id": "///d/37/OD2", "atom2_id": "///d/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6924, "atom1_serNum": 70931, "atom2_serNum": 78660, "donAcc_type": "acceptable", "distance": 3.555, "atom1_id": "///d/39/OG", "atom2_id": "///z/324/O2'", "atom_pair": "O:O", "residue_pair": "aa:nt" }, { "index": 6925, "atom1_serNum": 70942, "atom2_serNum": 71100, "donAcc_type": "standard", "distance": 2.424, "atom1_id": "///d/40/NH2", "atom2_id": "///d/61/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6926, "atom1_serNum": 70946, "atom2_serNum": 70948, "donAcc_type": "acceptable", "distance": 2.711, "atom1_id": "///d/41/O", "atom2_id": "///d/41/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6927, "atom1_serNum": 70948, "atom2_serNum": 78768, "donAcc_type": "acceptable", "distance": 3.070, "atom1_id": "///d/41/OG", "atom2_id": "///z/329/N3", "atom_pair": "O:N", "residue_pair": "aa:nt" }, { "index": 6928, "atom1_serNum": 70960, "atom2_serNum": 71132, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///d/43/O", "atom2_id": "///d/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6929, "atom1_serNum": 70974, "atom2_serNum": 71091, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///d/44/NH1", "atom2_id": "///d/60/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6930, "atom1_serNum": 70975, "atom2_serNum": 71091, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///d/44/NH2", "atom2_id": "///d/60/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6931, "atom1_serNum": 70975, "atom2_serNum": 71122, "donAcc_type": "questionable", "distance": 3.007, "atom1_id": "///d/44/NH2", "atom2_id": "///d/63/NH2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6932, "atom1_serNum": 71042, "atom2_serNum": 71048, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///d/54/N", "atom2_id": "///d/54/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6933, "atom1_serNum": 71068, "atom2_serNum": 71080, "donAcc_type": "standard", "distance": 3.390, "atom1_id": "///d/57/O", "atom2_id": "///d/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6934, "atom1_serNum": 71088, "atom2_serNum": 71095, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///d/60/N", "atom2_id": "///d/60/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6935, "atom1_serNum": 71096, "atom2_serNum": 71119, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///d/60/OE2", "atom2_id": "///d/63/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6936, "atom1_serNum": 71096, "atom2_serNum": 71122, "donAcc_type": "standard", "distance": 2.712, "atom1_id": "///d/60/OE2", "atom2_id": "///d/63/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6937, "atom1_serNum": 71106, "atom2_serNum": 71123, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///d/62/O", "atom2_id": "///d/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6938, "atom1_serNum": 71155, "atom2_serNum": 78787, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///d/67/NE", "atom2_id": "///z/330/N7", "atom_pair": "N:N", "residue_pair": "aa:nt" }, { "index": 6939, "atom1_serNum": 71158, "atom2_serNum": 78787, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///d/67/NH2", "atom2_id": "///z/330/N7", "atom_pair": "N:N", "residue_pair": "aa:nt" }, { "index": 6940, "atom1_serNum": 71179, "atom2_serNum": 71201, "donAcc_type": "questionable", "distance": 3.089, "atom1_id": "///e/2/N", "atom2_id": "///e/4/NE2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6941, "atom1_serNum": 71182, "atom2_serNum": 71202, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///e/2/O", "atom2_id": "///e/5/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6942, "atom1_serNum": 71182, "atom2_serNum": 71211, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///e/2/O", "atom2_id": "///e/6/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6943, "atom1_serNum": 71186, "atom2_serNum": 71219, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///e/3/O", "atom2_id": "///e/7/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6944, "atom1_serNum": 71214, "atom2_serNum": 71250, "donAcc_type": "acceptable", "distance": 2.423, "atom1_id": "///e/6/O", "atom2_id": "///e/9/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6945, "atom1_serNum": 71254, "atom2_serNum": 71268, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///e/10/O", "atom2_id": "///e/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6946, "atom1_serNum": 71264, "atom2_serNum": 71275, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///e/11/O", "atom2_id": "///e/12/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6947, "atom1_serNum": 71264, "atom2_serNum": 71278, "donAcc_type": "standard", "distance": 2.638, "atom1_id": "///e/11/O", "atom2_id": "///e/12/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6948, "atom1_serNum": 71277, "atom2_serNum": 71291, "donAcc_type": "standard", "distance": 3.723, "atom1_id": "///e/12/NH1", "atom2_id": "///e/14/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6949, "atom1_serNum": 71302, "atom2_serNum": 71332, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///e/15/O", "atom2_id": "///e/19/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6950, "atom1_serNum": 71306, "atom2_serNum": 71325, "donAcc_type": "questionable", "distance": 2.792, "atom1_id": "///e/16/O", "atom2_id": "///e/19/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6951, "atom1_serNum": 71319, "atom2_serNum": 71321, "donAcc_type": "acceptable", "distance": 2.935, "atom1_id": "///e/18/O", "atom2_id": "///e/18/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6952, "atom1_serNum": 71325, "atom2_serNum": 71338, "donAcc_type": "acceptable", "distance": 2.841, "atom1_id": "///e/19/O", "atom2_id": "///e/20/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6953, "atom1_serNum": 71339, "atom2_serNum": 71378, "donAcc_type": "standard", "distance": 2.638, "atom1_id": "///e/21/N", "atom2_id": "///e/26/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6954, "atom1_serNum": 71342, "atom2_serNum": 71369, "donAcc_type": "standard", "distance": 3.188, "atom1_id": "///e/21/O", "atom2_id": "///e/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6955, "atom1_serNum": 71345, "atom2_serNum": 71471, "donAcc_type": "standard", "distance": 3.445, "atom1_id": "///e/22/N", "atom2_id": "///e/37/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6956, "atom1_serNum": 71354, "atom2_serNum": 71459, "donAcc_type": "standard", "distance": 3.994, "atom1_id": "///e/22/NH1", "atom2_id": "///e/35/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6957, "atom1_serNum": 71354, "atom2_serNum": 71463, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///e/22/NH1", "atom2_id": "///e/36/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6958, "atom1_serNum": 71407, "atom2_serNum": 71490, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///e/29/O", "atom2_id": "///e/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6959, "atom1_serNum": 71416, "atom2_serNum": 71479, "donAcc_type": "standard", "distance": 2.605, "atom1_id": "///e/31/N", "atom2_id": "///e/38/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6960, "atom1_serNum": 71419, "atom2_serNum": 71460, "donAcc_type": "standard", "distance": 3.549, "atom1_id": "///e/31/O", "atom2_id": "///e/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6961, "atom1_serNum": 71419, "atom2_serNum": 71468, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///e/31/O", "atom2_id": "///e/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6962, "atom1_serNum": 71427, "atom2_serNum": 71456, "donAcc_type": "standard", "distance": 3.151, "atom1_id": "///e/32/O", "atom2_id": "///e/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6963, "atom1_serNum": 71459, "atom2_serNum": 71475, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///e/35/O", "atom2_id": "///e/37/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6964, "atom1_serNum": 71487, "atom2_serNum": 71516, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///e/39/O", "atom2_id": "///e/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6965, "atom1_serNum": 71493, "atom2_serNum": 71527, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///e/40/O", "atom2_id": "///e/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6966, "atom1_serNum": 71501, "atom2_serNum": 71508, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///e/41/N", "atom2_id": "///e/41/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6967, "atom1_serNum": 71504, "atom2_serNum": 71538, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///e/41/O", "atom2_id": "///e/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6968, "atom1_serNum": 71513, "atom2_serNum": 71547, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///e/42/O", "atom2_id": "///e/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6969, "atom1_serNum": 71519, "atom2_serNum": 71559, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///e/43/O", "atom2_id": "///e/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6970, "atom1_serNum": 71550, "atom2_serNum": 71581, "donAcc_type": "standard", "distance": 3.680, "atom1_id": "///e/46/O", "atom2_id": "///e/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6971, "atom1_serNum": 71562, "atom2_serNum": 71589, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///e/47/O", "atom2_id": "///e/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6972, "atom1_serNum": 71592, "atom2_serNum": 71604, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///e/51/O", "atom2_id": "///e/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6973, "atom1_serNum": 71607, "atom2_serNum": 71621, "donAcc_type": "standard", "distance": 3.497, "atom1_id": "///e/53/O", "atom2_id": "///e/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6974, "atom1_serNum": 71642, "atom2_serNum": 71653, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///f/76/O", "atom2_id": "///f/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6975, "atom1_serNum": 71693, "atom2_serNum": 71721, "donAcc_type": "standard", "distance": 3.091, "atom1_id": "///f/83/O", "atom2_id": "///f/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6976, "atom1_serNum": 71697, "atom2_serNum": 71725, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///f/84/O", "atom2_id": "///f/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6977, "atom1_serNum": 71737, "atom2_serNum": 71757, "donAcc_type": "standard", "distance": 2.688, "atom1_id": "///f/89/O", "atom2_id": "///f/91/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6978, "atom1_serNum": 71836, "atom2_serNum": 71840, "donAcc_type": "standard", "distance": 2.449, "atom1_id": "///f/101/O", "atom2_id": "///f/101/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6979, "atom1_serNum": 71836, "atom2_serNum": 71849, "donAcc_type": "acceptable", "distance": 2.462, "atom1_id": "///f/101/O", "atom2_id": "///f/102/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6980, "atom1_serNum": 71836, "atom2_serNum": 71855, "donAcc_type": "standard", "distance": 3.534, "atom1_id": "///f/101/O", "atom2_id": "///f/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6981, "atom1_serNum": 71847, "atom2_serNum": 71849, "donAcc_type": "acceptable", "distance": 2.773, "atom1_id": "///f/102/O", "atom2_id": "///f/102/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6982, "atom1_serNum": 71854, "atom2_serNum": 71890, "donAcc_type": "standard", "distance": 2.303, "atom1_id": "///f/103/O", "atom2_id": "///f/107/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6983, "atom1_serNum": 71869, "atom2_serNum": 71891, "donAcc_type": "standard", "distance": 2.703, "atom1_id": "///f/105/O", "atom2_id": "///f/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6984, "atom1_serNum": 71869, "atom2_serNum": 71902, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///f/105/O", "atom2_id": "///f/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6985, "atom1_serNum": 71883, "atom2_serNum": 71919, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///f/107/O", "atom2_id": "///f/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6986, "atom1_serNum": 71894, "atom2_serNum": 71931, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///f/108/O", "atom2_id": "///f/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6987, "atom1_serNum": 71905, "atom2_serNum": 71937, "donAcc_type": "questionable", "distance": 2.740, "atom1_id": "///f/109/O", "atom2_id": "///f/112/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6988, "atom1_serNum": 71905, "atom2_serNum": 71939, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///f/109/O", "atom2_id": "///f/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6989, "atom1_serNum": 71913, "atom2_serNum": 71950, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///f/110/O", "atom2_id": "///f/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6990, "atom1_serNum": 71918, "atom2_serNum": 71957, "donAcc_type": "questionable", "distance": 3.120, "atom1_id": "///f/110/NE2", "atom2_id": "///f/114/NE", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6991, "atom1_serNum": 71922, "atom2_serNum": 71961, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///f/111/O", "atom2_id": "///f/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6992, "atom1_serNum": 71959, "atom2_serNum": 72051, "donAcc_type": "standard", "distance": 3.622, "atom1_id": "///f/114/NH1", "atom2_id": "///f/126/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6993, "atom1_serNum": 72011, "atom2_serNum": 72026, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///f/121/O", "atom2_id": "///f/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6994, "atom1_serNum": 72011, "atom2_serNum": 72030, "donAcc_type": "standard", "distance": 3.089, "atom1_id": "///f/121/O", "atom2_id": "///f/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6995, "atom1_serNum": 72071, "atom2_serNum": 72081, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///f/129/O", "atom2_id": "///f/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6996, "atom1_serNum": 72071, "atom2_serNum": 72087, "donAcc_type": "questionable", "distance": 2.800, "atom1_id": "///f/129/O", "atom2_id": "///f/131/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6997, "atom1_serNum": 72174, "atom2_serNum": 72198, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///g/92/O", "atom2_id": "///g/94/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6998, "atom1_serNum": 72213, "atom2_serNum": 72228, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///g/96/O", "atom2_id": "///g/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6999, "atom1_serNum": 72222, "atom2_serNum": 72235, "donAcc_type": "standard", "distance": 3.345, "atom1_id": "///g/97/O", "atom2_id": "///g/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7000, "atom1_serNum": 72247, "atom2_serNum": 72272, "donAcc_type": "standard", "distance": 3.360, "atom1_id": "///g/100/O", "atom2_id": "///g/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7001, "atom1_serNum": 72255, "atom2_serNum": 72272, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///g/101/O", "atom2_id": "///g/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7002, "atom1_serNum": 72255, "atom2_serNum": 72281, "donAcc_type": "standard", "distance": 3.169, "atom1_id": "///g/101/O", "atom2_id": "///g/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7003, "atom1_serNum": 72260, "atom2_serNum": 72281, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///g/102/O", "atom2_id": "///g/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7004, "atom1_serNum": 72260, "atom2_serNum": 72293, "donAcc_type": "standard", "distance": 3.380, "atom1_id": "///g/102/O", "atom2_id": "///g/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7005, "atom1_serNum": 72275, "atom2_serNum": 72401, "donAcc_type": "standard", "distance": 2.308, "atom1_id": "///g/104/O", "atom2_id": "///g/118/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7006, "atom1_serNum": 72305, "atom2_serNum": 72370, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///g/107/N", "atom2_id": "///g/115/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7007, "atom1_serNum": 72308, "atom2_serNum": 72367, "donAcc_type": "standard", "distance": 3.689, "atom1_id": "///g/107/O", "atom2_id": "///g/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7008, "atom1_serNum": 72328, "atom2_serNum": 72372, "donAcc_type": "acceptable", "distance": 3.182, "atom1_id": "///g/109/OD2", "atom2_id": "///g/115/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7009, "atom1_serNum": 72399, "atom2_serNum": 72499, "donAcc_type": "standard", "distance": 3.226, "atom1_id": "///g/118/NE", "atom2_id": "///g/132/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7010, "atom1_serNum": 72406, "atom2_serNum": 72496, "donAcc_type": "standard", "distance": 3.920, "atom1_id": "///g/119/O", "atom2_id": "///g/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7011, "atom1_serNum": 72441, "atom2_serNum": 72634, "donAcc_type": "acceptable", "distance": 3.276, "atom1_id": "///g/123/OG", "atom2_id": "///g/148/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7012, "atom1_serNum": 72477, "atom2_serNum": 72485, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///g/129/O", "atom2_id": "///g/131/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7013, "atom1_serNum": 72481, "atom2_serNum": 72496, "donAcc_type": "standard", "distance": 3.312, "atom1_id": "///g/130/O", "atom2_id": "///g/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7014, "atom1_serNum": 72504, "atom2_serNum": 72568, "donAcc_type": "standard", "distance": 3.893, "atom1_id": "///g/133/N", "atom2_id": "///g/140/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7015, "atom1_serNum": 72547, "atom2_serNum": 72553, "donAcc_type": "standard", "distance": 3.093, "atom1_id": "///g/138/O", "atom2_id": "///g/138/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7016, "atom1_serNum": 72555, "atom2_serNum": 72626, "donAcc_type": "standard", "distance": 3.761, "atom1_id": "///g/139/N", "atom2_id": "///g/148/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7017, "atom1_serNum": 72558, "atom2_serNum": 72623, "donAcc_type": "standard", "distance": 3.685, "atom1_id": "///g/139/O", "atom2_id": "///g/148/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7018, "atom1_serNum": 72577, "atom2_serNum": 72611, "donAcc_type": "standard", "distance": 3.375, "atom1_id": "///g/141/N", "atom2_id": "///g/146/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7019, "atom1_serNum": 72656, "atom2_serNum": 74732, "donAcc_type": "questionable", "distance": 2.934, "atom1_id": "///h/2/O", "atom2_id": "///h/268/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7020, "atom1_serNum": 72663, "atom2_serNum": 74731, "donAcc_type": "questionable", "distance": 2.830, "atom1_id": "///h/3/O", "atom2_id": "///h/268/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7021, "atom1_serNum": 72672, "atom2_serNum": 75079, "donAcc_type": "acceptable", "distance": 3.784, "atom1_id": "///h/4/O", "atom2_id": "///h/313/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7022, "atom1_serNum": 72678, "atom2_serNum": 74731, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///h/5/N", "atom2_id": "///h/268/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7023, "atom1_serNum": 72689, "atom2_serNum": 75058, "donAcc_type": "standard", "distance": 3.752, "atom1_id": "///h/6/O", "atom2_id": "///h/311/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7024, "atom1_serNum": 72715, "atom2_serNum": 75037, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///h/9/O", "atom2_id": "///h/309/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7025, "atom1_serNum": 72719, "atom2_serNum": 72721, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///h/10/O", "atom2_id": "///h/10/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7026, "atom1_serNum": 72723, "atom2_serNum": 75022, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///h/11/N", "atom2_id": "///h/307/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7027, "atom1_serNum": 72726, "atom2_serNum": 75019, "donAcc_type": "standard", "distance": 3.603, "atom1_id": "///h/11/O", "atom2_id": "///h/307/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7028, "atom1_serNum": 72753, "atom2_serNum": 72980, "donAcc_type": "questionable", "distance": 3.406, "atom1_id": "///h/14/NE2", "atom2_id": "///h/43/NE1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 7029, "atom1_serNum": 72754, "atom2_serNum": 72931, "donAcc_type": "standard", "distance": 3.765, "atom1_id": "///h/15/N", "atom2_id": "///h/37/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7030, "atom1_serNum": 72757, "atom2_serNum": 75010, "donAcc_type": "standard", "distance": 2.667, "atom1_id": "///h/15/O", "atom2_id": "///h/305/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7031, "atom1_serNum": 72769, "atom2_serNum": 72913, "donAcc_type": "standard", "distance": 2.477, "atom1_id": "///h/17/O", "atom2_id": "///h/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7032, "atom1_serNum": 72774, "atom2_serNum": 72920, "donAcc_type": "questionable", "distance": 3.327, "atom1_id": "///h/17/NE1", "atom2_id": "///h/36/NE", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 7033, "atom1_serNum": 72783, "atom2_serNum": 74874, "donAcc_type": "acceptable", "distance": 3.364, "atom1_id": "///h/18/O", "atom2_id": "///h/287/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7034, "atom1_serNum": 72787, "atom2_serNum": 72905, "donAcc_type": "standard", "distance": 2.468, "atom1_id": "///h/19/N", "atom2_id": "///h/34/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7035, "atom1_serNum": 72790, "atom2_serNum": 72792, "donAcc_type": "acceptable", "distance": 2.977, "atom1_id": "///h/19/O", "atom2_id": "///h/19/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7036, "atom1_serNum": 72792, "atom2_serNum": 73179, "donAcc_type": "acceptable", "distance": 3.973, "atom1_id": "///h/19/OG1", "atom2_id": "///h/67/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7037, "atom1_serNum": 72794, "atom2_serNum": 72905, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///h/20/N", "atom2_id": "///h/34/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7038, "atom1_serNum": 72797, "atom2_serNum": 72902, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///h/20/O", "atom2_id": "///h/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7039, "atom1_serNum": 72802, "atom2_serNum": 73193, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///h/20/NE2", "atom2_id": "///h/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7040, "atom1_serNum": 72811, "atom2_serNum": 72891, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///h/22/N", "atom2_id": "///h/32/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7041, "atom1_serNum": 72814, "atom2_serNum": 72888, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///h/22/O", "atom2_id": "///h/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7042, "atom1_serNum": 72828, "atom2_serNum": 72849, "donAcc_type": "acceptable", "distance": 3.195, "atom1_id": "///h/24/OG1", "atom2_id": "///h/27/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7043, "atom1_serNum": 72845, "atom2_serNum": 73235, "donAcc_type": "standard", "distance": 2.444, "atom1_id": "///h/26/NE2", "atom2_id": "///h/75/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7044, "atom1_serNum": 72860, "atom2_serNum": 73020, "donAcc_type": "standard", "distance": 2.347, "atom1_id": "///h/28/O", "atom2_id": "///h/47/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7045, "atom1_serNum": 72870, "atom2_serNum": 72998, "donAcc_type": "questionable", "distance": 2.734, "atom1_id": "///h/29/OD1", "atom2_id": "///h/45/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7046, "atom1_serNum": 72870, "atom2_serNum": 73019, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///h/29/OD1", "atom2_id": "///h/47/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7047, "atom1_serNum": 72880, "atom2_serNum": 72975, "donAcc_type": "standard", "distance": 3.705, "atom1_id": "///h/31/N", "atom2_id": "///h/43/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7048, "atom1_serNum": 72883, "atom2_serNum": 72972, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///h/31/O", "atom2_id": "///h/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7049, "atom1_serNum": 72896, "atom2_serNum": 72959, "donAcc_type": "standard", "distance": 3.518, "atom1_id": "///h/33/N", "atom2_id": "///h/41/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7050, "atom1_serNum": 72899, "atom2_serNum": 72956, "donAcc_type": "standard", "distance": 3.533, "atom1_id": "///h/33/O", "atom2_id": "///h/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7051, "atom1_serNum": 72901, "atom2_serNum": 72980, "donAcc_type": "acceptable", "distance": 3.195, "atom1_id": "///h/33/OG", "atom2_id": "///h/43/NE1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7052, "atom1_serNum": 72910, "atom2_serNum": 72927, "donAcc_type": "questionable", "distance": 3.139, "atom1_id": "///h/35/O", "atom2_id": "///h/37/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7053, "atom1_serNum": 72924, "atom2_serNum": 72930, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///h/37/N", "atom2_id": "///h/37/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7054, "atom1_serNum": 72930, "atom2_serNum": 72946, "donAcc_type": "acceptable", "distance": 2.949, "atom1_id": "///h/37/OD1", "atom2_id": "///h/39/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7055, "atom1_serNum": 72931, "atom2_serNum": 72946, "donAcc_type": "acceptable", "distance": 2.839, "atom1_id": "///h/37/OD2", "atom2_id": "///h/39/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7056, "atom1_serNum": 72935, "atom2_serNum": 73112, "donAcc_type": "questionable", "distance": 3.169, "atom1_id": "///h/38/O", "atom2_id": "///h/59/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7057, "atom1_serNum": 72948, "atom2_serNum": 73112, "donAcc_type": "standard", "distance": 3.056, "atom1_id": "///h/40/N", "atom2_id": "///h/59/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7058, "atom1_serNum": 72951, "atom2_serNum": 73109, "donAcc_type": "standard", "distance": 2.602, "atom1_id": "///h/40/O", "atom2_id": "///h/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7059, "atom1_serNum": 72964, "atom2_serNum": 73096, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///h/42/N", "atom2_id": "///h/57/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7060, "atom1_serNum": 72967, "atom2_serNum": 73084, "donAcc_type": "standard", "distance": 3.330, "atom1_id": "///h/42/O", "atom2_id": "///h/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7061, "atom1_serNum": 72967, "atom2_serNum": 73093, "donAcc_type": "standard", "distance": 3.316, "atom1_id": "///h/42/O", "atom2_id": "///h/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7062, "atom1_serNum": 72986, "atom2_serNum": 73072, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///h/44/N", "atom2_id": "///h/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7063, "atom1_serNum": 72989, "atom2_serNum": 73003, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///h/44/O", "atom2_id": "///h/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7064, "atom1_serNum": 72989, "atom2_serNum": 73069, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///h/44/O", "atom2_id": "///h/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7065, "atom1_serNum": 72998, "atom2_serNum": 73019, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///h/45/O", "atom2_id": "///h/47/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7066, "atom1_serNum": 73003, "atom2_serNum": 73056, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///h/46/N", "atom2_id": "///h/52/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7067, "atom1_serNum": 73010, "atom2_serNum": 73056, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///h/47/N", "atom2_id": "///h/52/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7068, "atom1_serNum": 73045, "atom2_serNum": 73051, "donAcc_type": "standard", "distance": 2.653, "atom1_id": "///h/51/N", "atom2_id": "///h/51/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7069, "atom1_serNum": 73072, "atom2_serNum": 73084, "donAcc_type": "standard", "distance": 3.207, "atom1_id": "///h/54/O", "atom2_id": "///h/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7070, "atom1_serNum": 73102, "atom2_serNum": 73378, "donAcc_type": "standard", "distance": 2.542, "atom1_id": "///h/57/NH1", "atom2_id": "///h/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7071, "atom1_serNum": 73103, "atom2_serNum": 73385, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///h/57/NH2", "atom2_id": "///h/94/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7072, "atom1_serNum": 73141, "atom2_serNum": 73274, "donAcc_type": "acceptable", "distance": 2.992, "atom1_id": "///h/62/NE2", "atom2_id": "///h/80/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7073, "atom1_serNum": 73142, "atom2_serNum": 73306, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///h/63/N", "atom2_id": "///h/84/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7074, "atom1_serNum": 73148, "atom2_serNum": 73306, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///h/64/N", "atom2_id": "///h/84/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7075, "atom1_serNum": 73154, "atom2_serNum": 73158, "donAcc_type": "acceptable", "distance": 2.682, "atom1_id": "///h/64/ND1", "atom2_id": "///h/65/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 7076, "atom1_serNum": 73161, "atom2_serNum": 73285, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///h/65/O", "atom2_id": "///h/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7077, "atom1_serNum": 73176, "atom2_serNum": 73278, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///h/67/N", "atom2_id": "///h/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7078, "atom1_serNum": 73181, "atom2_serNum": 73278, "donAcc_type": "acceptable", "distance": 2.378, "atom1_id": "///h/67/OG", "atom2_id": "///h/81/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7079, "atom1_serNum": 73181, "atom2_serNum": 73495, "donAcc_type": "acceptable", "distance": 2.751, "atom1_id": "///h/67/OG", "atom2_id": "///h/108/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7080, "atom1_serNum": 73182, "atom2_serNum": 73278, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///h/68/N", "atom2_id": "///h/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7081, "atom1_serNum": 73185, "atom2_serNum": 73275, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///h/68/O", "atom2_id": "///h/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7082, "atom1_serNum": 73188, "atom2_serNum": 73190, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///h/68/OD1", "atom2_id": "///h/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7083, "atom1_serNum": 73189, "atom2_serNum": 73513, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///h/68/OD2", "atom2_id": "///h/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7084, "atom1_serNum": 73197, "atom2_serNum": 73264, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///h/70/N", "atom2_id": "///h/79/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7085, "atom1_serNum": 73200, "atom2_serNum": 73261, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///h/70/O", "atom2_id": "///h/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7086, "atom1_serNum": 73212, "atom2_serNum": 73248, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///h/72/N", "atom2_id": "///h/77/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7087, "atom1_serNum": 73215, "atom2_serNum": 73232, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///h/72/O", "atom2_id": "///h/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7088, "atom1_serNum": 73218, "atom2_serNum": 73562, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///h/73/N", "atom2_id": "///h/117/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7089, "atom1_serNum": 73221, "atom2_serNum": 73223, "donAcc_type": "acceptable", "distance": 2.934, "atom1_id": "///h/73/O", "atom2_id": "///h/73/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7090, "atom1_serNum": 73223, "atom2_serNum": 73545, "donAcc_type": "acceptable", "distance": 3.691, "atom1_id": "///h/73/OG", "atom2_id": "///h/115/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7091, "atom1_serNum": 73224, "atom2_serNum": 73230, "donAcc_type": "standard", "distance": 2.817, "atom1_id": "///h/74/N", "atom2_id": "///h/74/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7092, "atom1_serNum": 73224, "atom2_serNum": 73563, "donAcc_type": "questionable", "distance": 3.010, "atom1_id": "///h/74/N", "atom2_id": "///h/117/ND2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 7093, "atom1_serNum": 73230, "atom2_serNum": 73232, "donAcc_type": "standard", "distance": 2.646, "atom1_id": "///h/74/OD1", "atom2_id": "///h/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7094, "atom1_serNum": 73230, "atom2_serNum": 73236, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///h/74/OD1", "atom2_id": "///h/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7095, "atom1_serNum": 73230, "atom2_serNum": 73245, "donAcc_type": "standard", "distance": 3.571, "atom1_id": "///h/74/OD1", "atom2_id": "///h/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7096, "atom1_serNum": 73239, "atom2_serNum": 73367, "donAcc_type": "standard", "distance": 3.582, "atom1_id": "///h/76/O", "atom2_id": "///h/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7097, "atom1_serNum": 73259, "atom2_serNum": 73345, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///h/78/O", "atom2_id": "///h/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7098, "atom1_serNum": 73269, "atom2_serNum": 73329, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///h/80/N", "atom2_id": "///h/88/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7099, "atom1_serNum": 73272, "atom2_serNum": 73326, "donAcc_type": "standard", "distance": 3.055, "atom1_id": "///h/80/O", "atom2_id": "///h/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7100, "atom1_serNum": 73274, "atom2_serNum": 73329, "donAcc_type": "acceptable", "distance": 2.671, "atom1_id": "///h/80/OG", "atom2_id": "///h/88/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7101, "atom1_serNum": 73279, "atom2_serNum": 73314, "donAcc_type": "standard", "distance": 3.703, "atom1_id": "///h/82/N", "atom2_id": "///h/86/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7102, "atom1_serNum": 73282, "atom2_serNum": 73307, "donAcc_type": "standard", "distance": 3.594, "atom1_id": "///h/82/O", "atom2_id": "///h/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7103, "atom1_serNum": 73282, "atom2_serNum": 73492, "donAcc_type": "standard", "distance": 3.460, "atom1_id": "///h/82/O", "atom2_id": "///h/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7104, "atom1_serNum": 73288, "atom2_serNum": 73490, "donAcc_type": "questionable", "distance": 2.742, "atom1_id": "///h/83/O", "atom2_id": "///h/107/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7105, "atom1_serNum": 73310, "atom2_serNum": 73464, "donAcc_type": "acceptable", "distance": 3.395, "atom1_id": "///h/85/O", "atom2_id": "///h/104/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7106, "atom1_serNum": 73318, "atom2_serNum": 73439, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///h/87/N", "atom2_id": "///h/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7107, "atom1_serNum": 73321, "atom2_serNum": 73436, "donAcc_type": "standard", "distance": 2.688, "atom1_id": "///h/87/O", "atom2_id": "///h/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7108, "atom1_serNum": 73336, "atom2_serNum": 73405, "donAcc_type": "acceptable", "distance": 2.384, "atom1_id": "///h/88/NH2", "atom2_id": "///h/97/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7109, "atom1_serNum": 73337, "atom2_serNum": 73417, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "///h/89/N", "atom2_id": "///h/99/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7110, "atom1_serNum": 73340, "atom2_serNum": 73407, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///h/89/O", "atom2_id": "///h/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7111, "atom1_serNum": 73359, "atom2_serNum": 73396, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///h/91/N", "atom2_id": "///h/96/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7112, "atom1_serNum": 73362, "atom2_serNum": 73389, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///h/91/O", "atom2_id": "///h/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7113, "atom1_serNum": 73365, "atom2_serNum": 73367, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///h/91/OD1", "atom2_id": "///h/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7114, "atom1_serNum": 73366, "atom2_serNum": 73380, "donAcc_type": "acceptable", "distance": 3.049, "atom1_id": "///h/91/OD2", "atom2_id": "///h/93/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7115, "atom1_serNum": 73366, "atom2_serNum": 73387, "donAcc_type": "acceptable", "distance": 2.775, "atom1_id": "///h/91/OD2", "atom2_id": "///h/94/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7116, "atom1_serNum": 73403, "atom2_serNum": 73405, "donAcc_type": "acceptable", "distance": 2.819, "atom1_id": "///h/97/O", "atom2_id": "///h/97/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7117, "atom1_serNum": 73421, "atom2_serNum": 73707, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///h/99/NE", "atom2_id": "///h/135/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7118, "atom1_serNum": 73424, "atom2_serNum": 73707, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///h/99/NH2", "atom2_id": "///h/135/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7119, "atom1_serNum": 73487, "atom2_serNum": 73614, "donAcc_type": "acceptable", "distance": 2.324, "atom1_id": "///h/107/O", "atom2_id": "///h/124/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7120, "atom1_serNum": 73487, "atom2_serNum": 73615, "donAcc_type": "standard", "distance": 2.603, "atom1_id": "///h/107/O", "atom2_id": "///h/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7121, "atom1_serNum": 73491, "atom2_serNum": 73624, "donAcc_type": "standard", "distance": 3.377, "atom1_id": "///h/107/OD2", "atom2_id": "///h/125/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7122, "atom1_serNum": 73499, "atom2_serNum": 73608, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///h/109/N", "atom2_id": "///h/123/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7123, "atom1_serNum": 73507, "atom2_serNum": 73608, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///h/110/N", "atom2_id": "///h/123/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7124, "atom1_serNum": 73510, "atom2_serNum": 73605, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///h/110/O", "atom2_id": "///h/123/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7125, "atom1_serNum": 73512, "atom2_serNum": 73845, "donAcc_type": "acceptable", "distance": 3.410, "atom1_id": "///h/110/OG", "atom2_id": "///h/152/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7126, "atom1_serNum": 73520, "atom2_serNum": 73595, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///h/112/N", "atom2_id": "///h/121/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7127, "atom1_serNum": 73523, "atom2_serNum": 73592, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///h/112/O", "atom2_id": "///h/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7128, "atom1_serNum": 73536, "atom2_serNum": 73578, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///h/114/N", "atom2_id": "///h/119/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7129, "atom1_serNum": 73541, "atom2_serNum": 73564, "donAcc_type": "acceptable", "distance": 2.394, "atom1_id": "///h/114/OG", "atom2_id": "///h/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7130, "atom1_serNum": 73541, "atom2_serNum": 73575, "donAcc_type": "acceptable", "distance": 2.939, "atom1_id": "///h/114/OG", "atom2_id": "///h/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7131, "atom1_serNum": 73582, "atom2_serNum": 73696, "donAcc_type": "standard", "distance": 3.960, "atom1_id": "///h/119/OE1", "atom2_id": "///h/133/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7132, "atom1_serNum": 73584, "atom2_serNum": 73678, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///h/120/N", "atom2_id": "///h/132/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7133, "atom1_serNum": 73587, "atom2_serNum": 73675, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///h/120/O", "atom2_id": "///h/132/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7134, "atom1_serNum": 73599, "atom2_serNum": 73661, "donAcc_type": "standard", "distance": 3.234, "atom1_id": "///h/122/N", "atom2_id": "///h/130/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7135, "atom1_serNum": 73612, "atom2_serNum": 73838, "donAcc_type": "questionable", "distance": 2.933, "atom1_id": "///h/124/O", "atom2_id": "///h/151/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7136, "atom1_serNum": 73614, "atom2_serNum": 73626, "donAcc_type": "acceptable", "distance": 3.273, "atom1_id": "///h/124/OG", "atom2_id": "///h/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7137, "atom1_serNum": 73629, "atom2_serNum": 73643, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///h/126/O", "atom2_id": "///h/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7138, "atom1_serNum": 73632, "atom2_serNum": 73634, "donAcc_type": "standard", "distance": 2.425, "atom1_id": "///h/126/OD1", "atom2_id": "///h/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7139, "atom1_serNum": 73648, "atom2_serNum": 73666, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///h/128/OG1", "atom2_id": "///h/130/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7140, "atom1_serNum": 73653, "atom2_serNum": 73757, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///h/129/O", "atom2_id": "///h/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7141, "atom1_serNum": 73667, "atom2_serNum": 73741, "donAcc_type": "standard", "distance": 3.041, "atom1_id": "///h/131/N", "atom2_id": "///h/140/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7142, "atom1_serNum": 73670, "atom2_serNum": 73729, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///h/131/O", "atom2_id": "///h/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7143, "atom1_serNum": 73689, "atom2_serNum": 73719, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///h/133/N", "atom2_id": "///h/137/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7144, "atom1_serNum": 73753, "atom2_serNum": 73772, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///h/141/O", "atom2_id": "///h/143/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7145, "atom1_serNum": 73784, "atom2_serNum": 73795, "donAcc_type": "acceptable", "distance": 2.648, "atom1_id": "///h/145/O", "atom2_id": "///h/146/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7146, "atom1_serNum": 73784, "atom2_serNum": 74024, "donAcc_type": "standard", "distance": 3.682, "atom1_id": "///h/145/O", "atom2_id": "///h/175/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7147, "atom1_serNum": 73805, "atom2_serNum": 73959, "donAcc_type": "acceptable", "distance": 3.719, "atom1_id": "///h/147/NE2", "atom2_id": "///h/167/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7148, "atom1_serNum": 73806, "atom2_serNum": 73991, "donAcc_type": "standard", "distance": 2.564, "atom1_id": "///h/148/N", "atom2_id": "///h/171/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7149, "atom1_serNum": 73824, "atom2_serNum": 73970, "donAcc_type": "standard", "distance": 2.589, "atom1_id": "///h/150/O", "atom2_id": "///h/170/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7150, "atom1_serNum": 73842, "atom2_serNum": 73963, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///h/152/N", "atom2_id": "///h/168/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7151, "atom1_serNum": 73847, "atom2_serNum": 74180, "donAcc_type": "acceptable", "distance": 3.271, "atom1_id": "///h/152/OG", "atom2_id": "///h/195/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7152, "atom1_serNum": 73847, "atom2_serNum": 74188, "donAcc_type": "acceptable", "distance": 2.589, "atom1_id": "///h/152/OG", "atom2_id": "///h/196/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7153, "atom1_serNum": 73848, "atom2_serNum": 73963, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///h/153/N", "atom2_id": "///h/168/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7154, "atom1_serNum": 73851, "atom2_serNum": 73960, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///h/153/O", "atom2_id": "///h/168/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7155, "atom1_serNum": 73861, "atom2_serNum": 73950, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///h/155/N", "atom2_id": "///h/166/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7156, "atom1_serNum": 73864, "atom2_serNum": 73947, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///h/155/O", "atom2_id": "///h/166/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7157, "atom1_serNum": 73886, "atom2_serNum": 73888, "donAcc_type": "acceptable", "distance": 3.034, "atom1_id": "///h/157/O", "atom2_id": "///h/157/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7158, "atom1_serNum": 73888, "atom2_serNum": 73899, "donAcc_type": "acceptable", "distance": 3.701, "atom1_id": "///h/157/OG", "atom2_id": "///h/159/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7159, "atom1_serNum": 73888, "atom2_serNum": 73934, "donAcc_type": "acceptable", "distance": 2.473, "atom1_id": "///h/157/OG", "atom2_id": "///h/164/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7160, "atom1_serNum": 73892, "atom2_serNum": 73904, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///h/158/O", "atom2_id": "///h/160/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7161, "atom1_serNum": 73902, "atom2_serNum": 73910, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///h/159/OD1", "atom2_id": "///h/161/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7162, "atom1_serNum": 73902, "atom2_serNum": 73915, "donAcc_type": "acceptable", "distance": 2.927, "atom1_id": "///h/159/OD1", "atom2_id": "///h/161/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7163, "atom1_serNum": 73903, "atom2_serNum": 74245, "donAcc_type": "standard", "distance": 3.810, "atom1_id": "///h/159/ND2", "atom2_id": "///h/204/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7164, "atom1_serNum": 73919, "atom2_serNum": 73931, "donAcc_type": "standard", "distance": 2.662, "atom1_id": "///h/162/O", "atom2_id": "///h/164/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7165, "atom1_serNum": 73927, "atom2_serNum": 74035, "donAcc_type": "questionable", "distance": 3.276, "atom1_id": "///h/163/O", "atom2_id": "///h/177/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7166, "atom1_serNum": 73927, "atom2_serNum": 74052, "donAcc_type": "questionable", "distance": 3.299, "atom1_id": "///h/163/O", "atom2_id": "///h/178/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7167, "atom1_serNum": 73927, "atom2_serNum": 74054, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///h/163/O", "atom2_id": "///h/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7168, "atom1_serNum": 73939, "atom2_serNum": 74035, "donAcc_type": "standard", "distance": 3.286, "atom1_id": "///h/165/N", "atom2_id": "///h/177/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7169, "atom1_serNum": 73957, "atom2_serNum": 73959, "donAcc_type": "acceptable", "distance": 2.884, "atom1_id": "///h/167/O", "atom2_id": "///h/167/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7170, "atom1_serNum": 73957, "atom2_serNum": 74016, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///h/167/O", "atom2_id": "///h/175/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7171, "atom1_serNum": 73959, "atom2_serNum": 74019, "donAcc_type": "acceptable", "distance": 2.359, "atom1_id": "///h/167/OG", "atom2_id": "///h/175/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7172, "atom1_serNum": 73966, "atom2_serNum": 74004, "donAcc_type": "standard", "distance": 3.640, "atom1_id": "///h/169/N", "atom2_id": "///h/173/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7173, "atom1_serNum": 73969, "atom2_serNum": 74177, "donAcc_type": "standard", "distance": 3.319, "atom1_id": "///h/169/O", "atom2_id": "///h/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7174, "atom1_serNum": 74009, "atom2_serNum": 74125, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///h/174/N", "atom2_id": "///h/188/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7175, "atom1_serNum": 74012, "atom2_serNum": 74122, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///h/174/O", "atom2_id": "///h/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7176, "atom1_serNum": 74025, "atom2_serNum": 74110, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///h/176/N", "atom2_id": "///h/186/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7177, "atom1_serNum": 74028, "atom2_serNum": 74098, "donAcc_type": "standard", "distance": 2.425, "atom1_id": "///h/176/O", "atom2_id": "///h/185/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7178, "atom1_serNum": 74028, "atom2_serNum": 74107, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///h/176/O", "atom2_id": "///h/186/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7179, "atom1_serNum": 74046, "atom2_serNum": 74084, "donAcc_type": "standard", "distance": 3.161, "atom1_id": "///h/178/N", "atom2_id": "///h/183/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7180, "atom1_serNum": 74049, "atom2_serNum": 74073, "donAcc_type": "questionable", "distance": 2.866, "atom1_id": "///h/178/O", "atom2_id": "///h/181/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7181, "atom1_serNum": 74049, "atom2_serNum": 74075, "donAcc_type": "standard", "distance": 3.179, "atom1_id": "///h/178/O", "atom2_id": "///h/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7182, "atom1_serNum": 74049, "atom2_serNum": 74081, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///h/178/O", "atom2_id": "///h/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7183, "atom1_serNum": 74052, "atom2_serNum": 74062, "donAcc_type": "standard", "distance": 3.327, "atom1_id": "///h/178/OD1", "atom2_id": "///h/180/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7184, "atom1_serNum": 74067, "atom2_serNum": 74073, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///h/181/N", "atom2_id": "///h/181/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7185, "atom1_serNum": 74073, "atom2_serNum": 74075, "donAcc_type": "standard", "distance": 3.192, "atom1_id": "///h/181/OD1", "atom2_id": "///h/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7186, "atom1_serNum": 74073, "atom2_serNum": 74081, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///h/181/OD1", "atom2_id": "///h/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7187, "atom1_serNum": 74150, "atom2_serNum": 74157, "donAcc_type": "acceptable", "distance": 2.838, "atom1_id": "///h/191/ND1", "atom2_id": "///h/192/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7188, "atom1_serNum": 74153, "atom2_serNum": 74309, "donAcc_type": "standard", "distance": 2.457, "atom1_id": "///h/191/NE2", "atom2_id": "///h/215/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7189, "atom1_serNum": 74168, "atom2_serNum": 74285, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///h/194/O", "atom2_id": "///h/212/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7190, "atom1_serNum": 74185, "atom2_serNum": 74280, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///h/196/N", "atom2_id": "///h/210/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7191, "atom1_serNum": 74193, "atom2_serNum": 74280, "donAcc_type": "standard", "distance": 3.654, "atom1_id": "///h/197/N", "atom2_id": "///h/210/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7192, "atom1_serNum": 74196, "atom2_serNum": 74277, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///h/197/O", "atom2_id": "///h/210/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7193, "atom1_serNum": 74207, "atom2_serNum": 74269, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///h/199/N", "atom2_id": "///h/208/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7194, "atom1_serNum": 74210, "atom2_serNum": 74266, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///h/199/O", "atom2_id": "///h/208/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7195, "atom1_serNum": 74221, "atom2_serNum": 74255, "donAcc_type": "standard", "distance": 3.473, "atom1_id": "///h/201/N", "atom2_id": "///h/206/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7196, "atom1_serNum": 74224, "atom2_serNum": 74242, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///h/201/O", "atom2_id": "///h/204/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7197, "atom1_serNum": 74226, "atom2_serNum": 74246, "donAcc_type": "acceptable", "distance": 3.954, "atom1_id": "///h/201/OG", "atom2_id": "///h/205/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7198, "atom1_serNum": 74234, "atom2_serNum": 74240, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///h/203/N", "atom2_id": "///h/203/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7199, "atom1_serNum": 74249, "atom2_serNum": 74358, "donAcc_type": "standard", "distance": 2.556, "atom1_id": "///h/205/O", "atom2_id": "///h/221/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7200, "atom1_serNum": 74260, "atom2_serNum": 74339, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///h/207/N", "atom2_id": "///h/219/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7201, "atom1_serNum": 74263, "atom2_serNum": 74336, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///h/207/O", "atom2_id": "///h/219/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7202, "atom1_serNum": 74274, "atom2_serNum": 74320, "donAcc_type": "standard", "distance": 3.878, "atom1_id": "///h/209/O", "atom2_id": "///h/217/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7203, "atom1_serNum": 74284, "atom2_serNum": 74302, "donAcc_type": "standard", "distance": 3.186, "atom1_id": "///h/211/O", "atom2_id": "///h/214/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7204, "atom1_serNum": 74284, "atom2_serNum": 74476, "donAcc_type": "questionable", "distance": 3.064, "atom1_id": "///h/211/O", "atom2_id": "///h/236/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7205, "atom1_serNum": 74301, "atom2_serNum": 74314, "donAcc_type": "standard", "distance": 3.615, "atom1_id": "///h/213/OD2", "atom2_id": "///h/215/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7206, "atom1_serNum": 74305, "atom2_serNum": 74449, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///h/214/O", "atom2_id": "///h/232/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7207, "atom1_serNum": 74309, "atom2_serNum": 74320, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///h/215/O", "atom2_id": "///h/217/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7208, "atom1_serNum": 74313, "atom2_serNum": 74441, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///h/215/OE1", "atom2_id": "///h/231/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7209, "atom1_serNum": 74315, "atom2_serNum": 74436, "donAcc_type": "standard", "distance": 3.564, "atom1_id": "///h/216/N", "atom2_id": "///h/230/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7210, "atom1_serNum": 74331, "atom2_serNum": 74406, "donAcc_type": "standard", "distance": 3.790, "atom1_id": "///h/218/O", "atom2_id": "///h/227/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7211, "atom1_serNum": 74357, "atom2_serNum": 74374, "donAcc_type": "standard", "distance": 2.695, "atom1_id": "///h/220/OD2", "atom2_id": "///h/223/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7212, "atom1_serNum": 74377, "atom2_serNum": 74387, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///h/223/O", "atom2_id": "///h/225/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7213, "atom1_serNum": 74405, "atom2_serNum": 74417, "donAcc_type": "standard", "distance": 2.470, "atom1_id": "///h/226/NE2", "atom2_id": "///h/228/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7214, "atom1_serNum": 74452, "atom2_serNum": 74457, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///h/232/O", "atom2_id": "///h/234/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7215, "atom1_serNum": 74452, "atom2_serNum": 74606, "donAcc_type": "acceptable", "distance": 2.912, "atom1_id": "///h/232/O", "atom2_id": "///h/252/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7216, "atom1_serNum": 74457, "atom2_serNum": 74606, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///h/234/N", "atom2_id": "///h/252/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7217, "atom1_serNum": 74460, "atom2_serNum": 74473, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///h/234/O", "atom2_id": "///h/236/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7218, "atom1_serNum": 74481, "atom2_serNum": 74487, "donAcc_type": "standard", "distance": 2.652, "atom1_id": "///h/237/N", "atom2_id": "///h/237/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7219, "atom1_serNum": 74488, "atom2_serNum": 74861, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///h/237/ND2", "atom2_id": "///h/285/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7220, "atom1_serNum": 74492, "atom2_serNum": 74596, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///h/238/O", "atom2_id": "///h/251/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7221, "atom1_serNum": 74502, "atom2_serNum": 74588, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///h/240/N", "atom2_id": "///h/249/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7222, "atom1_serNum": 74505, "atom2_serNum": 74585, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///h/240/O", "atom2_id": "///h/249/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7223, "atom1_serNum": 74524, "atom2_serNum": 74563, "donAcc_type": "acceptable", "distance": 3.216, "atom1_id": "///h/242/OG", "atom2_id": "///h/247/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7224, "atom1_serNum": 74538, "atom2_serNum": 74540, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///h/244/OD1", "atom2_id": "///h/245/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7225, "atom1_serNum": 74571, "atom2_serNum": 74670, "donAcc_type": "standard", "distance": 3.161, "atom1_id": "///h/247/NE1", "atom2_id": "///h/260/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7226, "atom1_serNum": 74580, "atom2_serNum": 74650, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///h/248/O", "atom2_id": "///h/259/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7227, "atom1_serNum": 74591, "atom2_serNum": 74636, "donAcc_type": "standard", "distance": 2.582, "atom1_id": "///h/250/N", "atom2_id": "///h/257/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7228, "atom1_serNum": 74594, "atom2_serNum": 74633, "donAcc_type": "standard", "distance": 2.563, "atom1_id": "///h/250/O", "atom2_id": "///h/257/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7229, "atom1_serNum": 74601, "atom2_serNum": 74622, "donAcc_type": "standard", "distance": 2.729, "atom1_id": "///h/252/N", "atom2_id": "///h/255/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7230, "atom1_serNum": 74604, "atom2_serNum": 74606, "donAcc_type": "acceptable", "distance": 2.780, "atom1_id": "///h/252/O", "atom2_id": "///h/252/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7231, "atom1_serNum": 74606, "atom2_serNum": 74641, "donAcc_type": "acceptable", "distance": 3.646, "atom1_id": "///h/252/OG1", "atom2_id": "///h/257/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7232, "atom1_serNum": 74611, "atom2_serNum": 74863, "donAcc_type": "standard", "distance": 2.574, "atom1_id": "///h/253/O", "atom2_id": "///h/286/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7233, "atom1_serNum": 74615, "atom2_serNum": 74624, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///h/254/O", "atom2_id": "///h/255/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7234, "atom1_serNum": 74624, "atom2_serNum": 74758, "donAcc_type": "acceptable", "distance": 2.959, "atom1_id": "///h/255/OG", "atom2_id": "///h/271/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7235, "atom1_serNum": 74625, "atom2_serNum": 74745, "donAcc_type": "standard", "distance": 3.188, "atom1_id": "///h/256/N", "atom2_id": "///h/270/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7236, "atom1_serNum": 74628, "atom2_serNum": 74742, "donAcc_type": "standard", "distance": 2.445, "atom1_id": "///h/256/O", "atom2_id": "///h/270/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7237, "atom1_serNum": 74642, "atom2_serNum": 74728, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///h/258/N", "atom2_id": "///h/268/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7238, "atom1_serNum": 74645, "atom2_serNum": 74718, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///h/258/O", "atom2_id": "///h/267/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7239, "atom1_serNum": 74664, "atom2_serNum": 74705, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///h/260/N", "atom2_id": "///h/265/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7240, "atom1_serNum": 74675, "atom2_serNum": 74701, "donAcc_type": "standard", "distance": 3.741, "atom1_id": "///h/261/O", "atom2_id": "///h/264/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7241, "atom1_serNum": 74692, "atom2_serNum": 74702, "donAcc_type": "standard", "distance": 2.573, "atom1_id": "///h/263/O", "atom2_id": "///h/265/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7242, "atom1_serNum": 74736, "atom2_serNum": 74750, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///h/269/O", "atom2_id": "///h/271/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7243, "atom1_serNum": 74766, "atom2_serNum": 74784, "donAcc_type": "standard", "distance": 3.221, "atom1_id": "///h/272/OE1", "atom2_id": "///h/275/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7244, "atom1_serNum": 74767, "atom2_serNum": 74780, "donAcc_type": "standard", "distance": 2.442, "atom1_id": "///h/272/NE2", "atom2_id": "///h/274/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7245, "atom1_serNum": 74768, "atom2_serNum": 74775, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///h/273/N", "atom2_id": "///h/273/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7246, "atom1_serNum": 74771, "atom2_serNum": 74784, "donAcc_type": "standard", "distance": 3.141, "atom1_id": "///h/273/O", "atom2_id": "///h/275/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7247, "atom1_serNum": 74795, "atom2_serNum": 74797, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///h/276/O", "atom2_id": "///h/276/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7248, "atom1_serNum": 74808, "atom2_serNum": 74817, "donAcc_type": "standard", "distance": 3.094, "atom1_id": "///h/278/O", "atom2_id": "///h/280/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7249, "atom1_serNum": 74814, "atom2_serNum": 74816, "donAcc_type": "acceptable", "distance": 2.830, "atom1_id": "///h/279/O", "atom2_id": "///h/279/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7250, "atom1_serNum": 74843, "atom2_serNum": 74854, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///h/283/O", "atom2_id": "///h/285/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7251, "atom1_serNum": 74857, "atom2_serNum": 74988, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///h/285/O", "atom2_id": "///h/303/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7252, "atom1_serNum": 74857, "atom2_serNum": 74993, "donAcc_type": "acceptable", "distance": 2.710, "atom1_id": "///h/285/O", "atom2_id": "///h/303/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7253, "atom1_serNum": 74862, "atom2_serNum": 74993, "donAcc_type": "acceptable", "distance": 2.635, "atom1_id": "///h/285/NE2", "atom2_id": "///h/303/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7254, "atom1_serNum": 74869, "atom2_serNum": 74975, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///h/287/N", "atom2_id": "///h/301/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7255, "atom1_serNum": 74879, "atom2_serNum": 74972, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///h/288/O", "atom2_id": "///h/301/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7256, "atom1_serNum": 74893, "atom2_serNum": 74956, "donAcc_type": "standard", "distance": 3.208, "atom1_id": "///h/290/O", "atom2_id": "///h/299/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7257, "atom1_serNum": 74909, "atom2_serNum": 74944, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///h/292/N", "atom2_id": "///h/297/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7258, "atom1_serNum": 74920, "atom2_serNum": 74926, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///h/294/N", "atom2_id": "///h/294/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7259, "atom1_serNum": 74926, "atom2_serNum": 74932, "donAcc_type": "standard", "distance": 3.095, "atom1_id": "///h/294/OD1", "atom2_id": "///h/296/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7260, "atom1_serNum": 74948, "atom2_serNum": 75047, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///h/298/N", "atom2_id": "///h/310/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7261, "atom1_serNum": 74951, "atom2_serNum": 75044, "donAcc_type": "standard", "distance": 2.454, "atom1_id": "///h/298/O", "atom2_id": "///h/310/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7262, "atom1_serNum": 74967, "atom2_serNum": 75029, "donAcc_type": "standard", "distance": 2.707, "atom1_id": "///h/300/N", "atom2_id": "///h/308/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7263, "atom1_serNum": 74970, "atom2_serNum": 75026, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///h/300/O", "atom2_id": "///h/308/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7264, "atom1_serNum": 74976, "atom2_serNum": 75014, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///h/302/N", "atom2_id": "///h/306/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7265, "atom1_serNum": 74995, "atom2_serNum": 75002, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///h/304/N", "atom2_id": "///h/304/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7266, "atom1_serNum": 75065, "atom2_serNum": 75067, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///h/311/OE1", "atom2_id": "///h/312/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7267, "atom1_serNum": 75101, "atom2_serNum": 75137, "donAcc_type": "standard", "distance": 3.431, "atom1_id": "///n/2/O", "atom2_id": "///n/6/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7268, "atom1_serNum": 75112, "atom2_serNum": 75148, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///n/3/O", "atom2_id": "///n/7/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7269, "atom1_serNum": 75117, "atom2_serNum": 75157, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///n/4/O", "atom2_id": "///n/8/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7270, "atom1_serNum": 75126, "atom2_serNum": 75166, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///n/5/O", "atom2_id": "///n/9/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7271, "atom1_serNum": 75140, "atom2_serNum": 75177, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///n/6/O", "atom2_id": "///n/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7272, "atom1_serNum": 75151, "atom2_serNum": 75185, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///n/7/O", "atom2_id": "///n/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7273, "atom1_serNum": 75160, "atom2_serNum": 75196, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///n/8/O", "atom2_id": "///n/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7274, "atom1_serNum": 75169, "atom2_serNum": 75207, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///n/9/O", "atom2_id": "///n/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7275, "atom1_serNum": 75180, "atom2_serNum": 75215, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///n/10/O", "atom2_id": "///n/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7276, "atom1_serNum": 75188, "atom2_serNum": 75224, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///n/11/O", "atom2_id": "///n/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7277, "atom1_serNum": 75199, "atom2_serNum": 75235, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///n/12/O", "atom2_id": "///n/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7278, "atom1_serNum": 75210, "atom2_serNum": 75244, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///n/13/O", "atom2_id": "///n/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7279, "atom1_serNum": 75218, "atom2_serNum": 75255, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///n/14/O", "atom2_id": "///n/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7280, "atom1_serNum": 75227, "atom2_serNum": 75266, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///n/15/O", "atom2_id": "///n/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7281, "atom1_serNum": 75238, "atom2_serNum": 75275, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///n/16/O", "atom2_id": "///n/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7282, "atom1_serNum": 75247, "atom2_serNum": 75283, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///n/17/O", "atom2_id": "///n/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7283, "atom1_serNum": 75258, "atom2_serNum": 75294, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///n/18/O", "atom2_id": "///n/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7284, "atom1_serNum": 75269, "atom2_serNum": 75303, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///n/19/O", "atom2_id": "///n/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7285, "atom1_serNum": 75278, "atom2_serNum": 75314, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///n/20/O", "atom2_id": "///n/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7286, "atom1_serNum": 75286, "atom2_serNum": 75320, "donAcc_type": "standard", "distance": 2.643, "atom1_id": "///n/21/O", "atom2_id": "///n/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7287, "atom1_serNum": 75444, "atom2_serNum": 78647, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///z/125/O2", "atom2_id": "///z/323/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7288, "atom1_serNum": 75445, "atom2_serNum": 78645, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///z/125/N3", "atom2_id": "///z/323/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7289, "atom1_serNum": 75447, "atom2_serNum": 78644, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///z/125/N4", "atom2_id": "///z/323/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7290, "atom1_serNum": 75464, "atom2_serNum": 78624, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///z/126/O2", "atom2_id": "///z/322/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7291, "atom1_serNum": 75465, "atom2_serNum": 78622, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///z/126/N3", "atom2_id": "///z/322/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7292, "atom1_serNum": 75467, "atom2_serNum": 78621, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///z/126/N4", "atom2_id": "///z/322/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7293, "atom1_serNum": 75471, "atom2_serNum": 78420, "donAcc_type": "acceptable", "distance": 2.542, "atom1_id": "///z/127/OP1", "atom2_id": "///z/313/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7294, "atom1_serNum": 75485, "atom2_serNum": 78600, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///z/127/N3", "atom2_id": "///z/321/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7295, "atom1_serNum": 75487, "atom2_serNum": 78599, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///z/127/O4", "atom2_id": "///z/321/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7296, "atom1_serNum": 75504, "atom2_serNum": 78579, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///z/128/O2", "atom2_id": "///z/320/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7297, "atom1_serNum": 75505, "atom2_serNum": 78577, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///z/128/N3", "atom2_id": "///z/320/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7298, "atom1_serNum": 75507, "atom2_serNum": 78576, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///z/128/N4", "atom2_id": "///z/320/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7299, "atom1_serNum": 75524, "atom2_serNum": 78556, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///z/129/O2", "atom2_id": "///z/319/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7300, "atom1_serNum": 75525, "atom2_serNum": 78554, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///z/129/N3", "atom2_id": "///z/319/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7301, "atom1_serNum": 75527, "atom2_serNum": 78553, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///z/129/N4", "atom2_id": "///z/319/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7302, "atom1_serNum": 75544, "atom2_serNum": 78533, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///z/130/O2", "atom2_id": "///z/318/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7303, "atom1_serNum": 75545, "atom2_serNum": 78531, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///z/130/N3", "atom2_id": "///z/318/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7304, "atom1_serNum": 75547, "atom2_serNum": 78530, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///z/130/N4", "atom2_id": "///z/318/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7305, "atom1_serNum": 75567, "atom2_serNum": 78510, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///z/131/O6", "atom2_id": "///z/317/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7306, "atom1_serNum": 75568, "atom2_serNum": 78508, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///z/131/N1", "atom2_id": "///z/317/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7307, "atom1_serNum": 75570, "atom2_serNum": 78507, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///z/131/N2", "atom2_id": "///z/317/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7308, "atom1_serNum": 75590, "atom2_serNum": 78490, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///z/132/O6", "atom2_id": "///z/316/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7309, "atom1_serNum": 75591, "atom2_serNum": 78488, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///z/132/N1", "atom2_id": "///z/316/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7310, "atom1_serNum": 75593, "atom2_serNum": 78487, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///z/132/N2", "atom2_id": "///z/316/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7311, "atom1_serNum": 75613, "atom2_serNum": 78470, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///z/133/O6", "atom2_id": "///z/315/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7312, "atom1_serNum": 75614, "atom2_serNum": 78468, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///z/133/N1", "atom2_id": "///z/315/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7313, "atom1_serNum": 75616, "atom2_serNum": 78467, "donAcc_type": "standard", "distance": 2.834, "atom1_id": "///z/133/N2", "atom2_id": "///z/315/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7314, "atom1_serNum": 75629, "atom2_serNum": 75647, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///z/134/O2'", "atom2_id": "///z/135/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7315, "atom1_serNum": 75636, "atom2_serNum": 77934, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///z/134/N6", "atom2_id": "///z/290/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7316, "atom1_serNum": 75637, "atom2_serNum": 77932, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///z/134/N1", "atom2_id": "///z/290/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7317, "atom1_serNum": 75651, "atom2_serNum": 75674, "donAcc_type": "acceptable", "distance": 3.283, "atom1_id": "///z/135/O2'", "atom2_id": "///z/136/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7318, "atom1_serNum": 75651, "atom2_serNum": 78066, "donAcc_type": "acceptable", "distance": 2.346, "atom1_id": "///z/135/O2'", "atom2_id": "///z/297/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7319, "atom1_serNum": 75658, "atom2_serNum": 77914, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///z/135/O6", "atom2_id": "///z/289/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7320, "atom1_serNum": 75659, "atom2_serNum": 77912, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///z/135/N1", "atom2_id": "///z/289/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7321, "atom1_serNum": 75661, "atom2_serNum": 77911, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///z/135/N2", "atom2_id": "///z/289/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7322, "atom1_serNum": 75703, "atom2_serNum": 77870, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///z/137/O6", "atom2_id": "///z/287/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7323, "atom1_serNum": 75704, "atom2_serNum": 77869, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///z/137/N1", "atom2_id": "///z/287/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7324, "atom1_serNum": 75723, "atom2_serNum": 77852, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///z/138/O2", "atom2_id": "///z/286/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7325, "atom1_serNum": 75724, "atom2_serNum": 77850, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///z/138/N3", "atom2_id": "///z/286/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7326, "atom1_serNum": 75724, "atom2_serNum": 77870, "donAcc_type": "standard", "distance": 3.857, "atom1_id": "///z/138/N3", "atom2_id": "///z/287/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7327, "atom1_serNum": 75726, "atom2_serNum": 77849, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///z/138/N4", "atom2_id": "///z/286/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7328, "atom1_serNum": 75743, "atom2_serNum": 77829, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///z/139/O2", "atom2_id": "///z/285/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7329, "atom1_serNum": 75744, "atom2_serNum": 77827, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///z/139/N3", "atom2_id": "///z/285/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7330, "atom1_serNum": 75746, "atom2_serNum": 77826, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///z/139/N4", "atom2_id": "///z/285/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7331, "atom1_serNum": 75766, "atom2_serNum": 77806, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///z/140/N6", "atom2_id": "///z/284/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7332, "atom1_serNum": 75767, "atom2_serNum": 77804, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///z/140/N1", "atom2_id": "///z/284/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7333, "atom1_serNum": 75781, "atom2_serNum": 75794, "donAcc_type": "acceptable", "distance": 2.774, "atom1_id": "///z/141/O2'", "atom2_id": "///z/142/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7334, "atom1_serNum": 75781, "atom2_serNum": 75797, "donAcc_type": "acceptable", "distance": 2.940, "atom1_id": "///z/141/O2'", "atom2_id": "///z/142/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7335, "atom1_serNum": 75786, "atom2_serNum": 77116, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///z/141/N3", "atom2_id": "///z/252/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7336, "atom1_serNum": 75788, "atom2_serNum": 77115, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///z/141/O4", "atom2_id": "///z/252/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7337, "atom1_serNum": 75808, "atom2_serNum": 77095, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///z/142/N6", "atom2_id": "///z/251/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7338, "atom1_serNum": 75809, "atom2_serNum": 77093, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///z/142/N1", "atom2_id": "///z/251/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7339, "atom1_serNum": 75830, "atom2_serNum": 77075, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///z/143/O6", "atom2_id": "///z/250/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7340, "atom1_serNum": 75831, "atom2_serNum": 77073, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///z/143/N1", "atom2_id": "///z/250/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7341, "atom1_serNum": 75833, "atom2_serNum": 77072, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///z/143/N2", "atom2_id": "///z/250/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7342, "atom1_serNum": 75850, "atom2_serNum": 77053, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///z/144/O2", "atom2_id": "///z/249/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7343, "atom1_serNum": 75851, "atom2_serNum": 77052, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///z/144/N3", "atom2_id": "///z/249/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7344, "atom1_serNum": 75866, "atom2_serNum": 75882, "donAcc_type": "acceptable", "distance": 2.904, "atom1_id": "///z/145/O2'", "atom2_id": "///z/146/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7345, "atom1_serNum": 75866, "atom2_serNum": 75885, "donAcc_type": "acceptable", "distance": 3.048, "atom1_id": "///z/145/O2'", "atom2_id": "///z/146/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7346, "atom1_serNum": 75876, "atom2_serNum": 77029, "donAcc_type": "standard", "distance": 2.376, "atom1_id": "///z/145/N2", "atom2_id": "///z/248/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7347, "atom1_serNum": 75896, "atom2_serNum": 77012, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///z/146/O6", "atom2_id": "///z/247/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7348, "atom1_serNum": 75897, "atom2_serNum": 77010, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///z/146/N1", "atom2_id": "///z/247/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7349, "atom1_serNum": 75899, "atom2_serNum": 77009, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///z/146/N2", "atom2_id": "///z/247/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7350, "atom1_serNum": 75917, "atom2_serNum": 76991, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///z/147/N3", "atom2_id": "///z/246/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7351, "atom1_serNum": 75919, "atom2_serNum": 76990, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///z/147/O4", "atom2_id": "///z/246/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7352, "atom1_serNum": 75932, "atom2_serNum": 75948, "donAcc_type": "acceptable", "distance": 3.115, "atom1_id": "///z/148/O2'", "atom2_id": "///z/149/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7353, "atom1_serNum": 75936, "atom2_serNum": 76970, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///z/148/O2", "atom2_id": "///z/245/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7354, "atom1_serNum": 75937, "atom2_serNum": 76968, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///z/148/N3", "atom2_id": "///z/245/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7355, "atom1_serNum": 75939, "atom2_serNum": 76967, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///z/148/N4", "atom2_id": "///z/245/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7356, "atom1_serNum": 75957, "atom2_serNum": 76946, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///z/149/N3", "atom2_id": "///z/244/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7357, "atom1_serNum": 75959, "atom2_serNum": 76945, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///z/149/O4", "atom2_id": "///z/244/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7358, "atom1_serNum": 75979, "atom2_serNum": 76903, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///z/150/O6", "atom2_id": "///z/242/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7359, "atom1_serNum": 75980, "atom2_serNum": 76901, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///z/150/N1", "atom2_id": "///z/242/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7360, "atom1_serNum": 75982, "atom2_serNum": 76900, "donAcc_type": "standard", "distance": 2.777, "atom1_id": "///z/150/N2", "atom2_id": "///z/242/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7361, "atom1_serNum": 75999, "atom2_serNum": 76883, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///z/151/O2", "atom2_id": "///z/241/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7362, "atom1_serNum": 76000, "atom2_serNum": 76881, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///z/151/N3", "atom2_id": "///z/241/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7363, "atom1_serNum": 76002, "atom2_serNum": 76880, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///z/151/N4", "atom2_id": "///z/241/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7364, "atom1_serNum": 76022, "atom2_serNum": 76860, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///z/152/O6", "atom2_id": "///z/240/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7365, "atom1_serNum": 76023, "atom2_serNum": 76858, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///z/152/N1", "atom2_id": "///z/240/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7366, "atom1_serNum": 76025, "atom2_serNum": 76857, "donAcc_type": "standard", "distance": 2.727, "atom1_id": "///z/152/N2", "atom2_id": "///z/240/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7367, "atom1_serNum": 76038, "atom2_serNum": 76610, "donAcc_type": "acceptable", "distance": 2.552, "atom1_id": "///z/153/O2'", "atom2_id": "///z/229/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7368, "atom1_serNum": 76045, "atom2_serNum": 76840, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///z/153/O6", "atom2_id": "///z/239/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7369, "atom1_serNum": 76046, "atom2_serNum": 76838, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///z/153/N1", "atom2_id": "///z/239/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7370, "atom1_serNum": 76048, "atom2_serNum": 76837, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///z/153/N2", "atom2_id": "///z/239/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7371, "atom1_serNum": 76052, "atom2_serNum": 76598, "donAcc_type": "acceptable", "distance": 2.315, "atom1_id": "///z/154/OP1", "atom2_id": "///z/228/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7372, "atom1_serNum": 76054, "atom2_serNum": 76598, "donAcc_type": "acceptable", "distance": 2.995, "atom1_id": "///z/154/O5'", "atom2_id": "///z/228/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7373, "atom1_serNum": 76075, "atom2_serNum": 76598, "donAcc_type": "acceptable", "distance": 2.822, "atom1_id": "///z/155/OP2", "atom2_id": "///z/228/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7374, "atom1_serNum": 76087, "atom2_serNum": 76603, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///z/155/N7", "atom2_id": "///z/228/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7375, "atom1_serNum": 76090, "atom2_serNum": 76459, "donAcc_type": "standard", "distance": 3.835, "atom1_id": "///z/155/N6", "atom2_id": "///z/172/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7376, "atom1_serNum": 76090, "atom2_serNum": 76605, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///z/155/N6", "atom2_id": "///z/228/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7377, "atom1_serNum": 76105, "atom2_serNum": 76109, "donAcc_type": "acceptable", "distance": 2.730, "atom1_id": "///z/156/O2'", "atom2_id": "///z/156/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7378, "atom1_serNum": 76105, "atom2_serNum": 76118, "donAcc_type": "acceptable", "distance": 2.349, "atom1_id": "///z/156/O2'", "atom2_id": "///z/157/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7379, "atom1_serNum": 76105, "atom2_serNum": 76121, "donAcc_type": "acceptable", "distance": 2.862, "atom1_id": "///z/156/O2'", "atom2_id": "///z/157/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7380, "atom1_serNum": 76109, "atom2_serNum": 76436, "donAcc_type": "standard", "distance": 2.727, "atom1_id": "///z/156/O2", "atom2_id": "///z/171/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7381, "atom1_serNum": 76110, "atom2_serNum": 76434, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///z/156/N3", "atom2_id": "///z/171/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7382, "atom1_serNum": 76112, "atom2_serNum": 76433, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///z/156/N4", "atom2_id": "///z/171/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7383, "atom1_serNum": 76112, "atom2_serNum": 76605, "donAcc_type": "standard", "distance": 2.363, "atom1_id": "///z/156/N4", "atom2_id": "///z/228/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7384, "atom1_serNum": 76129, "atom2_serNum": 76413, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///z/157/O2", "atom2_id": "///z/170/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7385, "atom1_serNum": 76130, "atom2_serNum": 76411, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///z/157/N3", "atom2_id": "///z/170/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7386, "atom1_serNum": 76132, "atom2_serNum": 76410, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///z/157/N4", "atom2_id": "///z/170/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7387, "atom1_serNum": 76152, "atom2_serNum": 76390, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///z/158/O6", "atom2_id": "///z/169/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7388, "atom1_serNum": 76153, "atom2_serNum": 76388, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///z/158/N1", "atom2_id": "///z/169/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7389, "atom1_serNum": 76155, "atom2_serNum": 76387, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///z/158/N2", "atom2_id": "///z/169/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7390, "atom1_serNum": 76175, "atom2_serNum": 76370, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///z/159/O6", "atom2_id": "///z/168/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7391, "atom1_serNum": 76176, "atom2_serNum": 76368, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///z/159/N1", "atom2_id": "///z/168/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7392, "atom1_serNum": 76178, "atom2_serNum": 76367, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///z/159/N2", "atom2_id": "///z/168/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7393, "atom1_serNum": 76191, "atom2_serNum": 76202, "donAcc_type": "acceptable", "distance": 2.160, "atom1_id": "///z/160/O2'", "atom2_id": "///z/161/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7394, "atom1_serNum": 76196, "atom2_serNum": 76349, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///z/160/N3", "atom2_id": "///z/167/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7395, "atom1_serNum": 76198, "atom2_serNum": 76348, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///z/160/O4", "atom2_id": "///z/167/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7396, "atom1_serNum": 76218, "atom2_serNum": 76328, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///z/161/O6", "atom2_id": "///z/166/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7397, "atom1_serNum": 76219, "atom2_serNum": 76326, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///z/161/N1", "atom2_id": "///z/166/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7398, "atom1_serNum": 76221, "atom2_serNum": 76325, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///z/161/N2", "atom2_id": "///z/166/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7399, "atom1_serNum": 76234, "atom2_serNum": 76248, "donAcc_type": "acceptable", "distance": 3.031, "atom1_id": "///z/162/O2'", "atom2_id": "///z/163/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7400, "atom1_serNum": 76234, "atom2_serNum": 76252, "donAcc_type": "acceptable", "distance": 2.736, "atom1_id": "///z/162/O2'", "atom2_id": "///z/163/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7401, "atom1_serNum": 76292, "atom2_serNum": 76317, "donAcc_type": "questionable", "distance": 3.059, "atom1_id": "///z/165/O5'", "atom2_id": "///z/166/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7402, "atom1_serNum": 76297, "atom2_serNum": 76641, "donAcc_type": "acceptable", "distance": 3.070, "atom1_id": "///z/165/O3'", "atom2_id": "///z/230/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7403, "atom1_serNum": 76299, "atom2_serNum": 76641, "donAcc_type": "acceptable", "distance": 2.506, "atom1_id": "///z/165/O2'", "atom2_id": "///z/230/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7404, "atom1_serNum": 76299, "atom2_serNum": 76660, "donAcc_type": "acceptable", "distance": 3.366, "atom1_id": "///z/165/O2'", "atom2_id": "///z/231/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7405, "atom1_serNum": 76303, "atom2_serNum": 76813, "donAcc_type": "acceptable", "distance": 2.555, "atom1_id": "///z/165/N7", "atom2_id": "///z/238/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7406, "atom1_serNum": 76306, "atom2_serNum": 76793, "donAcc_type": "acceptable", "distance": 2.404, "atom1_id": "///z/165/N6", "atom2_id": "///z/237/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7407, "atom1_serNum": 76307, "atom2_serNum": 76793, "donAcc_type": "acceptable", "distance": 2.931, "atom1_id": "///z/165/N1", "atom2_id": "///z/237/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7408, "atom1_serNum": 76309, "atom2_serNum": 76651, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///z/165/N3", "atom2_id": "///z/230/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7409, "atom1_serNum": 76312, "atom2_serNum": 76628, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///z/166/OP1", "atom2_id": "///z/229/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7410, "atom1_serNum": 76313, "atom2_serNum": 76628, "donAcc_type": "standard", "distance": 3.246, "atom1_id": "///z/166/OP2", "atom2_id": "///z/229/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7411, "atom1_serNum": 76328, "atom2_serNum": 76655, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///z/166/N4", "atom2_id": "///z/231/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7412, "atom1_serNum": 76449, "atom2_serNum": 76467, "donAcc_type": "acceptable", "distance": 3.187, "atom1_id": "///z/172/O2'", "atom2_id": "///z/173/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7413, "atom1_serNum": 76456, "atom2_serNum": 76585, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///z/172/N6", "atom2_id": "///z/227/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7414, "atom1_serNum": 76457, "atom2_serNum": 76583, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///z/172/N1", "atom2_id": "///z/227/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7415, "atom1_serNum": 76478, "atom2_serNum": 76565, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///z/173/N6", "atom2_id": "///z/226/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7416, "atom1_serNum": 76479, "atom2_serNum": 76563, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///z/173/N1", "atom2_id": "///z/226/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7417, "atom1_serNum": 76498, "atom2_serNum": 76544, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///z/174/N3", "atom2_id": "///z/225/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7418, "atom1_serNum": 76500, "atom2_serNum": 76543, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///z/174/O4", "atom2_id": "///z/225/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7419, "atom1_serNum": 76536, "atom2_serNum": 76554, "donAcc_type": "acceptable", "distance": 2.829, "atom1_id": "///z/225/O2'", "atom2_id": "///z/226/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7420, "atom1_serNum": 76598, "atom2_serNum": 76610, "donAcc_type": "acceptable", "distance": 3.094, "atom1_id": "///z/228/O2'", "atom2_id": "///z/229/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7421, "atom1_serNum": 76618, "atom2_serNum": 76634, "donAcc_type": "acceptable", "distance": 2.851, "atom1_id": "///z/229/O2'", "atom2_id": "///z/230/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7422, "atom1_serNum": 76625, "atom2_serNum": 76820, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///z/229/O6", "atom2_id": "///z/238/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7423, "atom1_serNum": 76626, "atom2_serNum": 76818, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///z/229/N1", "atom2_id": "///z/238/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7424, "atom1_serNum": 76628, "atom2_serNum": 76817, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///z/229/N2", "atom2_id": "///z/238/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7425, "atom1_serNum": 76648, "atom2_serNum": 76800, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///z/230/O6", "atom2_id": "///z/237/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7426, "atom1_serNum": 76649, "atom2_serNum": 76798, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///z/230/N1", "atom2_id": "///z/237/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7427, "atom1_serNum": 76651, "atom2_serNum": 76797, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///z/230/N2", "atom2_id": "///z/237/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7428, "atom1_serNum": 76671, "atom2_serNum": 76780, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///z/231/O6", "atom2_id": "///z/236/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7429, "atom1_serNum": 76672, "atom2_serNum": 76778, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///z/231/N1", "atom2_id": "///z/236/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7430, "atom1_serNum": 76674, "atom2_serNum": 76714, "donAcc_type": "standard", "distance": 3.416, "atom1_id": "///z/231/N2", "atom2_id": "///z/233/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7431, "atom1_serNum": 76674, "atom2_serNum": 76777, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///z/231/N2", "atom2_id": "///z/236/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7432, "atom1_serNum": 76687, "atom2_serNum": 76699, "donAcc_type": "acceptable", "distance": 2.760, "atom1_id": "///z/232/O2'", "atom2_id": "///z/233/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7433, "atom1_serNum": 76691, "atom2_serNum": 76722, "donAcc_type": "questionable", "distance": 2.901, "atom1_id": "///z/232/O2", "atom2_id": "///z/234/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7434, "atom1_serNum": 76691, "atom2_serNum": 76760, "donAcc_type": "standard", "distance": 2.670, "atom1_id": "///z/232/O2", "atom2_id": "///z/235/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7435, "atom1_serNum": 76692, "atom2_serNum": 76758, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///z/232/N3", "atom2_id": "///z/235/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7436, "atom1_serNum": 76694, "atom2_serNum": 76757, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///z/232/N4", "atom2_id": "///z/235/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7437, "atom1_serNum": 76750, "atom2_serNum": 76766, "donAcc_type": "acceptable", "distance": 2.339, "atom1_id": "///z/235/O2'", "atom2_id": "///z/236/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7438, "atom1_serNum": 76750, "atom2_serNum": 76769, "donAcc_type": "acceptable", "distance": 2.376, "atom1_id": "///z/235/O2'", "atom2_id": "///z/236/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7439, "atom1_serNum": 76773, "atom2_serNum": 76786, "donAcc_type": "acceptable", "distance": 2.573, "atom1_id": "///z/236/O2'", "atom2_id": "///z/237/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7440, "atom1_serNum": 76853, "atom2_serNum": 76869, "donAcc_type": "acceptable", "distance": 3.208, "atom1_id": "///z/240/O2'", "atom2_id": "///z/241/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7441, "atom1_serNum": 76873, "atom2_serNum": 76889, "donAcc_type": "acceptable", "distance": 3.019, "atom1_id": "///z/241/O2'", "atom2_id": "///z/242/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7442, "atom1_serNum": 76938, "atom2_serNum": 76953, "donAcc_type": "acceptable", "distance": 2.857, "atom1_id": "///z/244/O2'", "atom2_id": "///z/245/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7443, "atom1_serNum": 76938, "atom2_serNum": 76956, "donAcc_type": "acceptable", "distance": 2.894, "atom1_id": "///z/244/O2'", "atom2_id": "///z/245/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7444, "atom1_serNum": 77068, "atom2_serNum": 77245, "donAcc_type": "acceptable", "distance": 3.948, "atom1_id": "///z/250/O2'", "atom2_id": "///z/258/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7445, "atom1_serNum": 77088, "atom2_serNum": 77144, "donAcc_type": "acceptable", "distance": 2.698, "atom1_id": "///z/251/O2'", "atom2_id": "///z/254/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7446, "atom1_serNum": 77088, "atom2_serNum": 77145, "donAcc_type": "acceptable", "distance": 2.967, "atom1_id": "///z/251/O2'", "atom2_id": "///z/254/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7447, "atom1_serNum": 77108, "atom2_serNum": 77791, "donAcc_type": "acceptable", "distance": 2.841, "atom1_id": "///z/252/O2'", "atom2_id": "///z/284/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7448, "atom1_serNum": 77122, "atom2_serNum": 77776, "donAcc_type": "acceptable", "distance": 2.183, "atom1_id": "///z/253/OP2", "atom2_id": "///z/283/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7449, "atom1_serNum": 77122, "atom2_serNum": 77791, "donAcc_type": "questionable", "distance": 2.885, "atom1_id": "///z/253/OP2", "atom2_id": "///z/284/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7450, "atom1_serNum": 77137, "atom2_serNum": 77703, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///z/253/O6", "atom2_id": "///z/279/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7451, "atom1_serNum": 77138, "atom2_serNum": 77701, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///z/253/N1", "atom2_id": "///z/279/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7452, "atom1_serNum": 77140, "atom2_serNum": 77700, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///z/253/N2", "atom2_id": "///z/279/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7453, "atom1_serNum": 77157, "atom2_serNum": 77683, "donAcc_type": "standard", "distance": 2.775, "atom1_id": "///z/254/O2", "atom2_id": "///z/278/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7454, "atom1_serNum": 77158, "atom2_serNum": 77681, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///z/254/N3", "atom2_id": "///z/278/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7455, "atom1_serNum": 77160, "atom2_serNum": 77680, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///z/254/N4", "atom2_id": "///z/278/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7456, "atom1_serNum": 77177, "atom2_serNum": 77660, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///z/255/O2", "atom2_id": "///z/277/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7457, "atom1_serNum": 77178, "atom2_serNum": 77658, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///z/255/N3", "atom2_id": "///z/277/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7458, "atom1_serNum": 77180, "atom2_serNum": 77657, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///z/255/N4", "atom2_id": "///z/277/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7459, "atom1_serNum": 77185, "atom2_serNum": 77216, "donAcc_type": "acceptable", "distance": 3.318, "atom1_id": "///z/256/OP2", "atom2_id": "///z/257/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7460, "atom1_serNum": 77201, "atom2_serNum": 77610, "donAcc_type": "standard", "distance": 2.555, "atom1_id": "///z/256/N1", "atom2_id": "///z/275/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7461, "atom1_serNum": 77203, "atom2_serNum": 77632, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///z/256/N2", "atom2_id": "///z/276/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7462, "atom1_serNum": 77204, "atom2_serNum": 77635, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///z/256/N3", "atom2_id": "///z/276/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7463, "atom1_serNum": 77223, "atom2_serNum": 77588, "donAcc_type": "standard", "distance": 3.149, "atom1_id": "///z/257/N6", "atom2_id": "///z/274/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7464, "atom1_serNum": 77238, "atom2_serNum": 77568, "donAcc_type": "acceptable", "distance": 3.385, "atom1_id": "///z/258/O2'", "atom2_id": "///z/273/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7465, "atom1_serNum": 77246, "atom2_serNum": 77576, "donAcc_type": "standard", "distance": 3.237, "atom1_id": "///z/258/N1", "atom2_id": "///z/274/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7466, "atom1_serNum": 77248, "atom2_serNum": 77576, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///z/258/N2", "atom2_id": "///z/274/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7467, "atom1_serNum": 77265, "atom2_serNum": 77277, "donAcc_type": "questionable", "distance": 2.864, "atom1_id": "///z/259/O2", "atom2_id": "///z/260/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7468, "atom1_serNum": 77268, "atom2_serNum": 77591, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///z/259/O4", "atom2_id": "///z/274/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7469, "atom1_serNum": 77285, "atom2_serNum": 77571, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///z/260/N7", "atom2_id": "///z/273/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7470, "atom1_serNum": 77288, "atom2_serNum": 77572, "donAcc_type": "standard", "distance": 3.073, "atom1_id": "///z/260/N6", "atom2_id": "///z/273/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7471, "atom1_serNum": 77289, "atom2_serNum": 77592, "donAcc_type": "questionable", "distance": 2.952, "atom1_id": "///z/260/N1", "atom2_id": "///z/274/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7472, "atom1_serNum": 77310, "atom2_serNum": 77548, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///z/261/O6", "atom2_id": "///z/272/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7473, "atom1_serNum": 77311, "atom2_serNum": 77546, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///z/261/N1", "atom2_id": "///z/272/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7474, "atom1_serNum": 77313, "atom2_serNum": 77545, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///z/261/N2", "atom2_id": "///z/272/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7475, "atom1_serNum": 77330, "atom2_serNum": 77526, "donAcc_type": "standard", "distance": 3.116, "atom1_id": "///z/262/O2", "atom2_id": "///z/271/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7476, "atom1_serNum": 77331, "atom2_serNum": 77525, "donAcc_type": "standard", "distance": 2.687, "atom1_id": "///z/262/N3", "atom2_id": "///z/271/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7477, "atom1_serNum": 77356, "atom2_serNum": 77503, "donAcc_type": "standard", "distance": 2.705, "atom1_id": "///z/263/N2", "atom2_id": "///z/270/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7478, "atom1_serNum": 77389, "atom2_serNum": 77401, "donAcc_type": "acceptable", "distance": 2.805, "atom1_id": "///z/265/O2'", "atom2_id": "///z/266/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7479, "atom1_serNum": 77498, "atom2_serNum": 77511, "donAcc_type": "acceptable", "distance": 3.012, "atom1_id": "///z/270/O2'", "atom2_id": "///z/271/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7480, "atom1_serNum": 77498, "atom2_serNum": 77514, "donAcc_type": "acceptable", "distance": 2.848, "atom1_id": "///z/270/O2'", "atom2_id": "///z/271/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7481, "atom1_serNum": 77620, "atom2_serNum": 77654, "donAcc_type": "questionable", "distance": 3.088, "atom1_id": "///z/276/OP2", "atom2_id": "///z/277/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7482, "atom1_serNum": 77720, "atom2_serNum": 77786, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///z/280/O2", "atom2_id": "///z/283/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7483, "atom1_serNum": 77721, "atom2_serNum": 77784, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///z/280/N3", "atom2_id": "///z/283/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7484, "atom1_serNum": 77723, "atom2_serNum": 77783, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///z/280/N4", "atom2_id": "///z/283/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7485, "atom1_serNum": 77728, "atom2_serNum": 77763, "donAcc_type": "questionable", "distance": 3.078, "atom1_id": "///z/281/OP2", "atom2_id": "///z/282/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7486, "atom1_serNum": 77893, "atom2_serNum": 78080, "donAcc_type": "standard", "distance": 3.653, "atom1_id": "///z/288/N1", "atom2_id": "///z/297/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7487, "atom1_serNum": 77907, "atom2_serNum": 77920, "donAcc_type": "acceptable", "distance": 2.913, "atom1_id": "///z/289/O2'", "atom2_id": "///z/290/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7488, "atom1_serNum": 77907, "atom2_serNum": 77923, "donAcc_type": "acceptable", "distance": 2.805, "atom1_id": "///z/289/O2'", "atom2_id": "///z/290/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7489, "atom1_serNum": 77927, "atom2_serNum": 78455, "donAcc_type": "acceptable", "distance": 2.484, "atom1_id": "///z/290/O2'", "atom2_id": "///z/315/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7490, "atom1_serNum": 77954, "atom2_serNum": 78191, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///z/291/O6", "atom2_id": "///z/302/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7491, "atom1_serNum": 77955, "atom2_serNum": 78190, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///z/291/N1", "atom2_id": "///z/302/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7492, "atom1_serNum": 77974, "atom2_serNum": 78173, "donAcc_type": "standard", "distance": 2.647, "atom1_id": "///z/292/O2", "atom2_id": "///z/301/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7493, "atom1_serNum": 77975, "atom2_serNum": 78171, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///z/292/N3", "atom2_id": "///z/301/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7494, "atom1_serNum": 77977, "atom2_serNum": 78170, "donAcc_type": "standard", "distance": 2.663, "atom1_id": "///z/292/N4", "atom2_id": "///z/301/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7495, "atom1_serNum": 77994, "atom2_serNum": 78150, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///z/293/O2", "atom2_id": "///z/300/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7496, "atom1_serNum": 77995, "atom2_serNum": 78148, "donAcc_type": "standard", "distance": 3.506, "atom1_id": "///z/293/N3", "atom2_id": "///z/300/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7497, "atom1_serNum": 77997, "atom2_serNum": 78147, "donAcc_type": "standard", "distance": 3.233, "atom1_id": "///z/293/N4", "atom2_id": "///z/300/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7498, "atom1_serNum": 78014, "atom2_serNum": 78125, "donAcc_type": "standard", "distance": 3.535, "atom1_id": "///z/294/O2", "atom2_id": "///z/299/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7499, "atom1_serNum": 78015, "atom2_serNum": 78124, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///z/294/N3", "atom2_id": "///z/299/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7500, "atom1_serNum": 78030, "atom2_serNum": 78045, "donAcc_type": "acceptable", "distance": 2.546, "atom1_id": "///z/295/O2'", "atom2_id": "///z/296/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7501, "atom1_serNum": 78040, "atom2_serNum": 78103, "donAcc_type": "standard", "distance": 3.128, "atom1_id": "///z/295/N2", "atom2_id": "///z/298/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7502, "atom1_serNum": 78053, "atom2_serNum": 78063, "donAcc_type": "acceptable", "distance": 2.820, "atom1_id": "///z/296/O2'", "atom2_id": "///z/296/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7503, "atom1_serNum": 78186, "atom2_serNum": 78202, "donAcc_type": "acceptable", "distance": 3.011, "atom1_id": "///z/302/O2'", "atom2_id": "///z/303/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7504, "atom1_serNum": 78213, "atom2_serNum": 78450, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///z/303/O6", "atom2_id": "///z/314/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7505, "atom1_serNum": 78214, "atom2_serNum": 78448, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///z/303/N1", "atom2_id": "///z/314/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7506, "atom1_serNum": 78216, "atom2_serNum": 78447, "donAcc_type": "standard", "distance": 2.786, "atom1_id": "///z/303/N2", "atom2_id": "///z/314/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7507, "atom1_serNum": 78233, "atom2_serNum": 78430, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///z/304/O2", "atom2_id": "///z/313/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7508, "atom1_serNum": 78234, "atom2_serNum": 78428, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///z/304/N3", "atom2_id": "///z/313/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7509, "atom1_serNum": 78236, "atom2_serNum": 78427, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///z/304/N4", "atom2_id": "///z/313/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7510, "atom1_serNum": 78249, "atom2_serNum": 78260, "donAcc_type": "acceptable", "distance": 3.103, "atom1_id": "///z/305/O2'", "atom2_id": "///z/306/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7511, "atom1_serNum": 78249, "atom2_serNum": 78262, "donAcc_type": "acceptable", "distance": 3.183, "atom1_id": "///z/305/O2'", "atom2_id": "///z/306/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7512, "atom1_serNum": 78254, "atom2_serNum": 78407, "donAcc_type": "standard", "distance": 2.594, "atom1_id": "///z/305/N3", "atom2_id": "///z/312/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7513, "atom1_serNum": 78256, "atom2_serNum": 78427, "donAcc_type": "questionable", "distance": 2.865, "atom1_id": "///z/305/O4", "atom2_id": "///z/313/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7514, "atom1_serNum": 78260, "atom2_serNum": 78687, "donAcc_type": "standard", "distance": 3.647, "atom1_id": "///z/306/OP1", "atom2_id": "///z/325/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7515, "atom1_serNum": 78269, "atom2_serNum": 78304, "donAcc_type": "acceptable", "distance": 3.388, "atom1_id": "///z/306/O2'", "atom2_id": "///z/308/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7516, "atom1_serNum": 78273, "atom2_serNum": 78319, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///z/306/O2", "atom2_id": "///z/308/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7517, "atom1_serNum": 78276, "atom2_serNum": 78727, "donAcc_type": "standard", "distance": 3.820, "atom1_id": "///z/306/O4", "atom2_id": "///z/327/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7518, "atom1_serNum": 78296, "atom2_serNum": 78748, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///z/307/O6", "atom2_id": "///z/328/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7519, "atom1_serNum": 78296, "atom2_serNum": 78768, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///z/307/O6", "atom2_id": "///z/329/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7520, "atom1_serNum": 78297, "atom2_serNum": 78767, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///z/307/N1", "atom2_id": "///z/329/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7521, "atom1_serNum": 78299, "atom2_serNum": 78781, "donAcc_type": "standard", "distance": 3.697, "atom1_id": "///z/307/N2", "atom2_id": "///z/330/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7522, "atom1_serNum": 78316, "atom2_serNum": 78750, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///z/308/O2", "atom2_id": "///z/328/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7523, "atom1_serNum": 78317, "atom2_serNum": 78748, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///z/308/N3", "atom2_id": "///z/328/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7524, "atom1_serNum": 78319, "atom2_serNum": 78339, "donAcc_type": "standard", "distance": 3.304, "atom1_id": "///z/308/N4", "atom2_id": "///z/309/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7525, "atom1_serNum": 78319, "atom2_serNum": 78747, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///z/308/N4", "atom2_id": "///z/328/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7526, "atom1_serNum": 78339, "atom2_serNum": 78727, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///z/309/O6", "atom2_id": "///z/327/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7527, "atom1_serNum": 78340, "atom2_serNum": 78725, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///z/309/N1", "atom2_id": "///z/327/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7528, "atom1_serNum": 78342, "atom2_serNum": 78724, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///z/309/N2", "atom2_id": "///z/327/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7529, "atom1_serNum": 78362, "atom2_serNum": 78707, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///z/310/N6", "atom2_id": "///z/326/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7530, "atom1_serNum": 78363, "atom2_serNum": 78705, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///z/310/N1", "atom2_id": "///z/326/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7531, "atom1_serNum": 78384, "atom2_serNum": 78687, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///z/311/O6", "atom2_id": "///z/325/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7532, "atom1_serNum": 78385, "atom2_serNum": 78685, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///z/311/N1", "atom2_id": "///z/325/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 7533, "atom1_serNum": 78387, "atom2_serNum": 78684, "donAcc_type": "standard", "distance": 2.772, "atom1_id": "///z/311/N2", "atom2_id": "///z/325/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 7534, "atom1_serNum": 78763, "atom2_serNum": 78767, "donAcc_type": "acceptable", "distance": 2.878, "atom1_id": "///z/329/O2'", "atom2_id": "///z/329/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 7535, "atom1_serNum": 78763, "atom2_serNum": 78776, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///z/329/O2'", "atom2_id": "///z/330/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" } ], "refCoords": { "purine": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 -0.5000 0.4000", " 3 N -2.2500 -0.5000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 1.2500 5.0000 0.4000", " 6 C 1.2500 -0.5000 0.4000", " 7 C 1.2500 -0.5000 -0.4000", " 8 C 1.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 -0.5000 0.4000", " 11 C -2.2500 -0.5000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ], "pyrimidine": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 1.0000 0.4000", " 3 N -2.2500 1.0000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 1.2500 5.0000 0.4000", " 6 C 1.2500 1.0000 0.4000", " 7 C 1.2500 1.0000 -0.4000", " 8 C 1.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 1.0000 0.4000", " 11 C -2.2500 1.0000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ], "wc_pair": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 -5.0000 0.4000", " 3 N -2.2500 -5.0000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 2.2500 5.0000 0.4000", " 6 C 2.2500 -5.0000 0.4000", " 7 C 2.2500 -5.0000 -0.4000", " 8 C 2.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 -5.0000 0.4000", " 11 C -2.2500 -5.0000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ] }, "metadata": { "license": "http://innovation.columbia.edu/technologies/CU20391", "url": "http://x3dna.org/", "url_alt": "http://home.x3dna.org/", "forum": "http://forum.x3dna.org/", "citation": "Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].", "str_id": "7syn", "num_aaChains": 34, "aaChains": "B=217,C=213,D=221,E=228,F=262,G=191,H=237,I=185,J=206,K=185,L=96,M=151,N=117,O=149,P=136,Q=115,R=142,S=132,T=144,U=141,V=100,W=83,X=129,Y=141,Z=124,a=77,b=101,c=83,d=67,e=55,f=57,g=68,h=313,n=25", "num_naChains": 2, "naChains": "2=1697,z=162", "num_atoms": 78761, "num_waters": 0, "num_metals": 2, "metals_desc": "Zn=2", "num_notes": 52, "notes": [ { "Aminors": "A-minor interactions (including types I and II)" }, { "Cstem_index": "stem index of the 'Canonical' helix in k-turn" }, { "Cstem_pair": "Cstem bp delineating the k-turn internal loop" }, { "Dp": "perpendicular distance of the 3' P atom to the glycosidic bond" }, { "GA_pair": "sheared G-A pair in k-turn" }, { "HtypePknot": "H-type pseudoknot" }, { "Kturn": "kink-turn (k-turn)" }, { "LW": "Leontis-Westhof" }, { "NCstem_index": "stem index of the 'Non-Canonical' helix in k-turn" }, { "NCstem_pair": "NCstem bp delineating the k-turn internal loop" }, { "Uturn": "U-turn of the UNR- or GNRA-type" }, { "aa": "amino acid" }, { "atom_pair": "symbols of the two atoms involved in an H-bond" }, { "auxfiles": "auxiliary files" }, { "glyco_bond": "conformation of base related to sugar (syn or anti)" }, { "bb_type": "backbone conformation, BI or BII" }, { "bending_angle": "angle between two helical axes" }, { "bp": "base pair" }, { "bseq": "base sequence in one-letter code" }, { "bulge": "bulge loop" }, { "coaxStacks": "coaxial stacking of stems within a helix" }, { "dbn": "dot bracket notation" }, { "desc": "description" }, { "donAcc_type": "donor/acceptor type of the atom pair in an H-bond" }, { "epsilon_zeta": "difference between epsilon and zeta torsion angles" }, { "hairpin": "hairpin loop" }, { "hbond": "hydrogen bond (H-bond)" }, { "helix": "defined by base-stacking interactions, regardless of bp type and backbone connectivity" }, { "id": "identifier" }, { "iloop": "internal loop" }, { "index": "serial number" }, { "isoCanonPairs": "isolated canonical pairs" }, { "junction": "(multi-branched) junction loop" }, { "kissingLoop": "kissing loop" }, { "multiplet": "3+ bases in a coplanar geometry" }, { "na": "nucleic acid" }, { "nonPair": "two nts not forming a pair, but with H-bonding/stacking interactions" }, { "nonStack": "nucleotide not involved in stacking interactions" }, { "nt": "nucleotide" }, { "num": "number" }, { "oArea": "overlap areas between two bases, including exocyclic atoms" }, { "oArea_ring": "overlap areas between two bases, including only ring atoms" }, { "phosContacts": "H-bonding and atom-capping interactions involving a phosphate" }, { "residue_pair": "types of the two residues involved in an H-bond" }, { "rmsd": "root-mean-squares deviation" }, { "serNum": "serial number" }, { "ssSegments": "single-stranded segments not involved in loops" }, { "ssZp": "Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane" }, { "sstr": "secondary structure in dbn" }, { "stem": "helix consisting of only canonical pairs, with a continuous backbone" }, { "str_id": "structure identifier, derived from inpfile with extension removed" }, { "vert_dist": "vertical distance from an atom to a base plane" } ], "num_auxfiles": 21, "auxfiles": [ { "index": 1, "name": "dssr-pairs.pdb", "desc": "an ensemble of base pairs" }, { "index": 2, "name": "dssr-multiplets.pdb", "desc": "an ensemble of multiplets" }, { "index": 3, "name": "dssr-stems.pdb", "desc": "an ensemble of stems" }, { "index": 4, "name": "dssr-helices.pdb", "desc": "an ensemble of helices (coaxial stacking)" }, { "index": 5, "name": "dssr-hairpins.pdb", "desc": "an ensemble of hairpin loops" }, { "index": 6, "name": "dssr-bulges.pdb", "desc": "an ensemble of bulges" }, { "index": 7, "name": "dssr-iloops.pdb", "desc": "an ensemble of internal loops" }, { "index": 8, "name": "dssr-junctions.pdb", "desc": "an ensemble of junctions (multi-branch)" }, { "index": 9, "name": "dssr-2ndstrs.bpseq", "desc": "secondary structure in bpseq format" }, { "index": 10, "name": "dssr-2ndstrs.ct", "desc": "secondary structure in connectivity table format" }, { "index": 11, "name": "dssr-2ndstrs.dbn", "desc": "secondary structure in dot-bracket notation" }, { "index": 12, "name": "dssr-torsions.txt", "desc": "backbone torsion angles and suite names" }, { "index": 13, "name": "dssr-splays.pdb", "desc": "an ensemble of splayed-apart units" }, { "index": 14, "name": "dssr-Aminors.pdb", "desc": "an ensemble of A minor motifs (types I and II)" }, { "index": 15, "name": "dssr-Kturns.pdb", "desc": "an ensemble of kink-turn motifs" }, { "index": 16, "name": "dssr-stacks.pdb", "desc": "an ensemble of base stacks" }, { "index": 17, "name": "dssr-atom2bases.pdb", "desc": "an ensemble of atom-base stacking interactions" }, { "index": 18, "name": "dssr-rotmat.txt", "desc": "position vector and rotation matrix" }, { "index": 19, "name": "dssr-viewV.pdb", "desc": "vertical view of the principal moment of inertia" }, { "index": 20, "name": "dssr-viewH.pdb", "desc": "horizontal view of the principal moment of inertia" }, { "index": 21, "name": "dssr-viewT.pdb", "desc": "top view of the principal moment of inertia" } ], "time_used": "999" } }